Query 001287
Match_columns 1107
No_of_seqs 501 out of 3163
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 20:21:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001287.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001287hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2oaj_A Protein SNI1; WD40 repe 100.0 5.9E-64 2E-68 643.4 76.8 779 21-912 3-844 (902)
2 2ymu_A WD-40 repeat protein; u 100.0 4.8E-49 1.6E-53 483.9 65.7 562 30-890 11-575 (577)
3 2ymu_A WD-40 repeat protein; u 100.0 5E-45 1.7E-49 448.1 65.0 525 30-844 52-577 (577)
4 1nr0_A Actin interacting prote 100.0 1.4E-44 4.9E-49 447.0 63.9 559 35-846 18-610 (611)
5 1nr0_A Actin interacting prote 100.0 4.1E-44 1.4E-48 442.9 61.2 494 31-703 55-569 (611)
6 3sfz_A APAF-1, apoptotic pepti 100.0 1.4E-43 4.8E-48 475.4 55.6 620 29-890 609-1244(1249)
7 1pgu_A Actin interacting prote 100.0 2.1E-40 7E-45 409.7 58.6 556 33-846 16-613 (615)
8 3sfz_A APAF-1, apoptotic pepti 100.0 5.3E-41 1.8E-45 450.4 54.5 558 31-847 653-1249(1249)
9 1pgu_A Actin interacting prote 100.0 2.6E-39 8.8E-44 399.9 49.2 491 29-701 57-614 (615)
10 2oaj_A Protein SNI1; WD40 repe 100.0 1.8E-36 6.3E-41 388.5 55.3 564 30-708 53-739 (902)
11 1vyh_C Platelet-activating fac 100.0 5.1E-35 1.7E-39 343.0 35.6 307 28-633 101-410 (410)
12 3mkq_A Coatomer beta'-subunit; 100.0 1.5E-34 5.1E-39 370.2 42.1 473 32-697 10-501 (814)
13 3ow8_A WD repeat-containing pr 100.0 2.2E-33 7.7E-38 317.4 41.0 201 30-280 27-236 (321)
14 1vyh_C Platelet-activating fac 100.0 1.7E-33 5.9E-38 329.9 39.5 170 62-281 94-265 (410)
15 1got_B GT-beta; complex (GTP-b 100.0 4.2E-33 1.4E-37 318.0 39.6 292 68-631 47-340 (340)
16 1r5m_A SIR4-interacting protei 100.0 3.2E-33 1.1E-37 327.7 36.5 360 27-634 37-425 (425)
17 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.6E-32 1.2E-36 310.9 43.6 202 31-280 11-224 (345)
18 4gqb_B Methylosome protein 50; 100.0 4.4E-33 1.5E-37 317.7 35.2 162 32-213 27-205 (344)
19 2ynn_A Coatomer subunit beta'; 100.0 2E-32 6.7E-37 307.2 39.7 290 70-634 7-302 (304)
20 1r5m_A SIR4-interacting protei 100.0 1.2E-32 4.1E-37 322.8 39.5 355 57-700 25-424 (425)
21 3iz6_a 40S ribosomal protein R 100.0 1.9E-33 6.5E-38 326.1 32.1 312 69-636 59-377 (380)
22 3ow8_A WD repeat-containing pr 100.0 2.7E-32 9.4E-37 308.5 40.5 285 115-699 30-319 (321)
23 1got_B GT-beta; complex (GTP-b 100.0 6.4E-32 2.2E-36 308.2 41.6 201 31-282 51-258 (340)
24 4g56_B MGC81050 protein; prote 100.0 1.4E-32 4.7E-37 315.9 36.1 319 40-635 10-344 (357)
25 3mkq_A Coatomer beta'-subunit; 100.0 1.7E-31 6E-36 341.7 49.7 289 70-635 7-303 (814)
26 1gxr_A ESG1, transducin-like e 100.0 2.5E-32 8.7E-37 309.4 36.5 320 35-633 9-336 (337)
27 2pbi_B Guanine nucleotide-bind 100.0 6.6E-32 2.3E-36 309.8 39.0 293 69-631 57-354 (354)
28 2pbi_B Guanine nucleotide-bind 100.0 7.9E-32 2.7E-36 309.2 39.4 203 31-281 60-271 (354)
29 2ynn_A Coatomer subunit beta'; 100.0 1E-31 3.4E-36 301.4 39.0 204 32-282 10-218 (304)
30 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.6E-31 8.9E-36 303.8 42.8 313 71-705 10-339 (345)
31 2pm9_A Protein WEB1, protein t 100.0 1.5E-33 5.2E-38 330.3 24.3 364 36-635 13-415 (416)
32 3frx_A Guanine nucleotide-bind 100.0 4.5E-31 1.5E-35 298.3 41.6 201 31-280 13-226 (319)
33 4gqb_B Methylosome protein 50; 100.0 1E-31 3.5E-36 306.5 36.2 301 59-703 16-333 (344)
34 2pm9_A Protein WEB1, protein t 100.0 4.8E-33 1.6E-37 326.0 23.5 340 77-702 13-415 (416)
35 4g56_B MGC81050 protein; prote 100.0 3.8E-32 1.3E-36 312.2 29.8 320 80-701 9-343 (357)
36 3vl1_A 26S proteasome regulato 100.0 1.1E-31 3.9E-36 315.1 34.3 354 36-635 57-420 (420)
37 4ery_A WD repeat-containing pr 100.0 1.9E-30 6.3E-35 292.0 42.4 204 31-282 19-224 (312)
38 1erj_A Transcriptional repress 100.0 4.6E-31 1.6E-35 307.6 38.4 302 73-634 61-389 (393)
39 3vl1_A 26S proteasome regulato 100.0 7.5E-31 2.6E-35 308.0 39.8 353 78-701 58-419 (420)
40 2xzm_R RACK1; ribosome, transl 100.0 1.5E-30 5E-35 297.3 40.6 205 30-280 16-243 (343)
41 3frx_A Guanine nucleotide-bind 100.0 3.8E-30 1.3E-34 290.6 43.2 297 115-702 15-318 (319)
42 3iz6_a 40S ribosomal protein R 100.0 1.4E-31 4.7E-36 310.5 31.8 209 30-282 61-281 (380)
43 1gxr_A ESG1, transducin-like e 100.0 4.7E-31 1.6E-35 299.0 34.8 324 75-699 8-335 (337)
44 1erj_A Transcriptional repress 100.0 1.1E-30 3.7E-35 304.4 38.3 212 28-282 57-288 (393)
45 2hes_X YDR267CP; beta-propelle 100.0 9.7E-30 3.3E-34 288.8 41.3 202 30-281 9-230 (330)
46 4ery_A WD repeat-containing pr 100.0 6E-30 2E-34 287.8 39.0 289 69-633 16-311 (312)
47 2xzm_R RACK1; ribosome, transl 100.0 3.3E-30 1.1E-34 294.4 37.4 302 70-635 15-341 (343)
48 2hes_X YDR267CP; beta-propelle 100.0 1.2E-29 4.1E-34 288.1 41.6 310 108-701 4-328 (330)
49 4aow_A Guanine nucleotide-bind 100.0 6.9E-30 2.4E-34 290.2 39.6 214 21-282 25-247 (340)
50 2j04_B YDR362CP, TAU91; beta p 100.0 2.2E-31 7.4E-36 319.5 22.6 359 29-700 127-516 (524)
51 3gre_A Serine/threonine-protei 100.0 4.3E-30 1.5E-34 303.6 33.1 374 42-698 34-437 (437)
52 4aow_A Guanine nucleotide-bind 100.0 1.1E-28 3.7E-33 280.3 42.4 312 100-703 18-339 (340)
53 3zwl_B Eukaryotic translation 100.0 1.9E-28 6.5E-33 281.1 44.5 228 18-282 15-250 (369)
54 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.6E-28 5.5E-33 291.0 44.9 313 31-634 114-442 (445)
55 3ei3_B DNA damage-binding prot 100.0 5.2E-29 1.8E-33 288.8 37.6 202 30-282 68-283 (383)
56 3v7d_B Cell division control p 100.0 1.4E-28 4.8E-33 293.0 41.6 343 70-697 115-459 (464)
57 1k8k_C P40, ARP2/3 complex 41 100.0 7E-29 2.4E-33 285.7 36.4 163 32-209 5-173 (372)
58 4a11_B DNA excision repair pro 100.0 2.6E-28 9E-33 284.3 41.1 220 28-282 36-277 (408)
59 3i2n_A WD repeat-containing pr 100.0 7.3E-29 2.5E-33 283.6 34.9 206 30-280 13-242 (357)
60 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5E-28 1.7E-32 286.8 42.8 318 70-700 112-441 (445)
61 3k26_A Polycomb protein EED; W 100.0 2.9E-29 1E-33 287.8 30.7 328 71-633 13-365 (366)
62 4e54_B DNA damage-binding prot 100.0 8.3E-30 2.8E-34 301.2 26.8 205 32-282 116-328 (435)
63 2j04_B YDR362CP, TAU91; beta p 100.0 4.8E-30 1.6E-34 307.9 24.3 192 43-282 169-387 (524)
64 3v7d_B Cell division control p 100.0 8.8E-28 3E-32 286.2 43.1 219 26-282 112-342 (464)
65 4h5i_A Guanine nucleotide-exch 100.0 7.9E-29 2.7E-33 285.4 32.9 309 32-635 11-344 (365)
66 3odt_A Protein DOA1; ubiquitin 100.0 5.8E-28 2E-32 270.6 38.6 288 69-638 11-300 (313)
67 3zwl_B Eukaryotic translation 100.0 7.7E-28 2.6E-32 276.0 39.6 303 113-705 28-350 (369)
68 1k8k_C P40, ARP2/3 complex 41 100.0 3.5E-28 1.2E-32 279.8 36.6 308 116-705 7-365 (372)
69 1sq9_A Antiviral protein SKI8; 100.0 3.1E-28 1.1E-32 283.2 36.6 308 71-635 11-396 (397)
70 3dm0_A Maltose-binding peripla 100.0 2.6E-28 9E-33 306.3 38.2 207 31-282 378-593 (694)
71 3gre_A Serine/threonine-protei 100.0 6.2E-29 2.1E-33 293.6 30.3 202 32-282 60-293 (437)
72 3k26_A Polycomb protein EED; W 100.0 3.6E-28 1.2E-32 278.6 34.7 233 29-282 12-261 (366)
73 3ei3_B DNA damage-binding prot 100.0 5.9E-28 2E-32 279.9 36.2 164 71-282 68-237 (383)
74 1sq9_A Antiviral protein SKI8; 100.0 6.5E-28 2.2E-32 280.6 35.8 217 29-282 10-268 (397)
75 3i2n_A WD repeat-containing pr 100.0 1.1E-27 3.6E-32 273.9 35.2 308 115-704 16-356 (357)
76 4a11_B DNA excision repair pro 100.0 7.5E-28 2.6E-32 280.5 33.0 328 56-638 22-369 (408)
77 4e54_B DNA damage-binding prot 100.0 2.8E-28 9.5E-33 288.1 29.1 164 71-282 114-283 (435)
78 3dm0_A Maltose-binding peripla 100.0 3.1E-27 1.1E-31 296.5 40.2 293 115-700 380-692 (694)
79 4gga_A P55CDC, cell division c 100.0 3.4E-27 1.2E-31 277.4 37.9 151 38-210 108-262 (420)
80 3dwl_C Actin-related protein 2 100.0 2.5E-28 8.7E-33 282.1 27.2 162 74-282 9-178 (377)
81 2j04_A TAU60, YPL007P, hypothe 100.0 4.4E-29 1.5E-33 291.3 20.3 194 31-282 11-212 (588)
82 3dwl_C Actin-related protein 2 100.0 7E-29 2.4E-33 286.8 21.3 223 31-283 7-238 (377)
83 2pm7_B Protein transport prote 100.0 4.8E-27 1.6E-31 262.3 33.9 126 70-210 3-133 (297)
84 3odt_A Protein DOA1; ubiquitin 100.0 1.8E-26 6E-31 258.5 36.9 197 30-282 13-215 (313)
85 4aez_A CDC20, WD repeat-contai 100.0 1E-26 3.5E-31 271.5 35.6 293 69-639 84-385 (401)
86 1yfq_A Cell cycle arrest prote 100.0 1.4E-26 4.6E-31 263.3 32.9 289 71-631 6-321 (342)
87 4ggc_A P55CDC, cell division c 100.0 5.9E-26 2E-30 255.0 37.4 282 79-635 28-316 (318)
88 3bg1_A Protein SEC13 homolog; 100.0 8.7E-27 3E-31 262.7 28.7 273 115-634 11-293 (316)
89 2pm7_B Protein transport prote 100.0 6.8E-26 2.3E-30 253.0 35.4 207 29-281 3-238 (297)
90 1p22_A F-BOX/WD-repeat protein 100.0 5E-26 1.7E-30 268.7 36.3 114 29-148 127-242 (435)
91 3dw8_B Serine/threonine-protei 100.0 2.5E-26 8.7E-31 271.7 33.5 211 35-281 28-315 (447)
92 4h5i_A Guanine nucleotide-exch 100.0 1.1E-25 3.7E-30 259.1 37.6 156 490-700 183-342 (365)
93 4aez_A CDC20, WD repeat-contai 100.0 4.6E-26 1.6E-30 266.0 34.0 198 32-282 88-294 (401)
94 1yfq_A Cell cycle arrest prote 100.0 3.1E-26 1E-30 260.4 31.5 200 31-282 7-226 (342)
95 3f3f_A Nucleoporin SEH1; struc 100.0 6.4E-26 2.2E-30 257.2 33.5 218 30-282 6-250 (351)
96 4ggc_A P55CDC, cell division c 100.0 1.1E-25 3.6E-30 252.9 34.9 197 38-282 28-231 (318)
97 3mmy_A MRNA export factor; mRN 99.9 5.2E-26 1.8E-30 260.7 31.2 164 67-281 30-199 (368)
98 3f3f_A Nucleoporin SEH1; struc 99.9 1.5E-25 5.2E-30 254.0 32.2 181 71-280 6-200 (351)
99 3dw8_B Serine/threonine-protei 99.9 6.2E-26 2.1E-30 268.3 30.0 182 73-282 25-259 (447)
100 3mmy_A MRNA export factor; mRN 99.9 3.5E-25 1.2E-29 253.7 34.9 299 103-698 24-343 (368)
101 1p22_A F-BOX/WD-repeat protein 99.9 3.2E-25 1.1E-29 261.8 35.3 115 72-211 129-244 (435)
102 4gga_A P55CDC, cell division c 99.9 7.4E-25 2.5E-29 257.5 37.6 285 119-703 107-397 (420)
103 3bg1_A Protein SEC13 homolog; 99.9 4.3E-26 1.5E-30 257.0 25.6 164 71-280 8-197 (316)
104 1k32_A Tricorn protease; prote 99.9 1.3E-22 4.4E-27 266.1 54.9 443 34-703 13-504 (1045)
105 2aq5_A Coronin-1A; WD40 repeat 99.9 1.1E-24 3.9E-29 254.2 30.9 198 35-281 34-254 (402)
106 3jrp_A Fusion protein of prote 99.9 3.2E-24 1.1E-28 247.0 33.4 121 115-281 9-134 (379)
107 3jrp_A Fusion protein of prote 99.9 2.1E-24 7.1E-29 248.6 31.6 167 70-282 5-192 (379)
108 2j04_A TAU60, YPL007P, hypothe 99.9 3.4E-25 1.2E-29 258.6 20.4 284 71-633 10-296 (588)
109 1k32_A Tricorn protease; prote 99.9 1.5E-22 5.1E-27 265.5 47.3 377 31-637 48-505 (1045)
110 2xyi_A Probable histone-bindin 99.9 1.6E-23 5.5E-28 246.8 33.5 209 28-280 38-308 (430)
111 2vdu_B TRNA (guanine-N(7)-)-me 99.9 2E-23 6.7E-28 247.6 34.3 160 76-282 4-230 (450)
112 3vu4_A KMHSV2; beta-propeller 99.9 1.4E-23 4.7E-28 240.6 29.4 192 32-282 16-228 (355)
113 2xyi_A Probable histone-bindin 99.9 3.9E-23 1.3E-27 243.5 33.4 153 490-702 238-411 (430)
114 3vu4_A KMHSV2; beta-propeller 99.9 2.7E-23 9.4E-28 238.1 30.9 168 501-703 155-338 (355)
115 3bws_A Protein LP49; two-domai 99.9 4.3E-22 1.5E-26 234.4 39.9 199 34-282 59-293 (433)
116 4gq1_A NUP37; propeller, trans 99.9 2.5E-23 8.7E-28 242.0 29.0 226 33-282 13-287 (393)
117 3jro_A Fusion protein of prote 99.9 5.7E-24 1.9E-28 268.7 24.9 207 30-282 4-239 (753)
118 2aq5_A Coronin-1A; WD40 repeat 99.9 2.3E-23 7.8E-28 243.1 27.8 156 490-704 183-345 (402)
119 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.5E-22 5E-27 240.2 33.8 200 36-282 5-272 (450)
120 1l0q_A Surface layer protein; 99.9 1.1E-21 3.7E-26 227.6 39.9 185 47-282 2-190 (391)
121 4gq1_A NUP37; propeller, trans 99.9 1E-22 3.5E-27 236.8 28.9 115 125-282 97-219 (393)
122 1l0q_A Surface layer protein; 99.9 3.1E-21 1.1E-25 223.7 40.3 329 89-704 3-345 (391)
123 3jro_A Fusion protein of prote 99.9 1.6E-22 5.6E-27 255.4 30.7 121 115-281 7-132 (753)
124 3lrv_A PRE-mRNA-splicing facto 99.9 1.3E-22 4.5E-27 231.2 26.4 159 84-282 44-202 (343)
125 3bws_A Protein LP49; two-domai 99.9 1.5E-20 5.2E-25 221.1 39.6 355 34-700 26-431 (433)
126 1nir_A Nitrite reductase; hemo 99.9 4.2E-21 1.4E-25 232.0 34.1 204 40-282 142-356 (543)
127 3lrv_A PRE-mRNA-splicing facto 99.9 4.4E-22 1.5E-26 226.9 21.7 187 42-282 43-245 (343)
128 2w18_A PALB2, fancn, partner a 99.9 1.2E-20 3.9E-25 207.4 30.7 143 494-699 192-355 (356)
129 2w18_A PALB2, fancn, partner a 99.9 1.8E-20 6.1E-25 205.9 31.4 103 497-632 252-355 (356)
130 1nir_A Nitrite reductase; hemo 99.9 1.9E-20 6.6E-25 226.2 34.3 351 84-708 145-521 (543)
131 2ecf_A Dipeptidyl peptidase IV 99.9 6.3E-20 2.1E-24 232.0 35.2 224 21-282 20-322 (741)
132 2hqs_A Protein TOLB; TOLB, PAL 99.8 5.2E-19 1.8E-23 206.9 29.4 195 36-281 63-300 (415)
133 2hqs_A Protein TOLB; TOLB, PAL 99.8 1.7E-18 5.7E-23 202.6 30.5 298 77-660 63-409 (415)
134 2z3z_A Dipeptidyl aminopeptida 99.8 2.4E-18 8.1E-23 216.2 33.9 205 38-282 28-294 (706)
135 2ecf_A Dipeptidyl peptidase IV 99.8 3.8E-18 1.3E-22 215.6 33.7 169 76-278 36-237 (741)
136 1ri6_A Putative isomerase YBHE 99.8 2E-16 6.7E-21 179.0 37.1 145 90-281 6-160 (343)
137 1xfd_A DIP, dipeptidyl aminope 99.8 8.5E-18 2.9E-22 211.8 27.4 216 33-282 14-290 (723)
138 1ri6_A Putative isomerase YBHE 99.8 1.7E-16 5.7E-21 179.6 33.5 188 49-280 7-208 (343)
139 2z3z_A Dipeptidyl aminopeptida 99.8 1.3E-16 4.5E-21 200.3 34.0 157 489-703 263-437 (706)
140 2ojh_A Uncharacterized protein 99.7 1.4E-16 4.7E-21 175.7 26.2 176 53-279 18-202 (297)
141 1pby_B Quinohemoprotein amine 99.7 6.9E-16 2.4E-20 174.0 32.3 147 89-282 2-164 (337)
142 3u4y_A Uncharacterized protein 99.7 1.3E-15 4.6E-20 171.7 31.8 149 82-281 3-160 (331)
143 3hfq_A Uncharacterized protein 99.7 3.7E-15 1.3E-19 169.5 34.4 164 490-705 147-323 (347)
144 3vgz_A Uncharacterized protein 99.7 1.1E-14 3.7E-19 165.6 35.1 167 75-282 39-216 (353)
145 1z68_A Fibroblast activation p 99.7 4.5E-16 1.6E-20 195.8 25.8 153 39-199 19-189 (719)
146 1xfd_A DIP, dipeptidyl aminope 99.7 4.6E-16 1.6E-20 195.9 25.8 172 77-280 17-203 (723)
147 3vgz_A Uncharacterized protein 99.7 5.5E-15 1.9E-19 168.0 31.9 206 32-282 37-263 (353)
148 3u4y_A Uncharacterized protein 99.7 3.8E-15 1.3E-19 168.0 28.5 194 41-282 3-208 (331)
149 3o4h_A Acylamino-acid-releasin 99.7 1.1E-15 3.6E-20 187.4 25.4 154 76-282 21-185 (582)
150 2ojh_A Uncharacterized protein 99.7 4.2E-15 1.4E-19 163.6 26.2 202 30-282 36-259 (297)
151 3scy_A Hypothetical bacterial 99.7 1.4E-13 4.8E-18 157.4 37.0 138 490-657 217-360 (361)
152 1pby_B Quinohemoprotein amine 99.7 7.6E-15 2.6E-19 165.4 25.9 147 48-216 2-170 (337)
153 3o4h_A Acylamino-acid-releasin 99.7 7.9E-15 2.7E-19 179.6 27.7 192 36-282 22-228 (582)
154 3hfq_A Uncharacterized protein 99.7 6.8E-14 2.3E-18 159.0 32.9 145 97-280 15-170 (347)
155 1jmx_B Amine dehydrogenase; ox 99.6 2.2E-14 7.4E-19 162.7 27.6 157 40-216 4-182 (349)
156 2oit_A Nucleoporin 214KDA; NH2 99.6 1.4E-15 4.7E-20 178.6 18.0 203 36-282 37-279 (434)
157 1z68_A Fibroblast activation p 99.6 8.6E-15 2.9E-19 184.2 24.5 163 81-279 20-198 (719)
158 3scy_A Hypothetical bacterial 99.6 1.3E-12 4.3E-17 149.4 37.7 166 490-707 161-345 (361)
159 1jof_A Carboxy-CIS,CIS-muconat 99.6 8.9E-13 3.1E-17 151.1 32.3 170 490-702 151-342 (365)
160 1jof_A Carboxy-CIS,CIS-muconat 99.6 1E-12 3.5E-17 150.6 31.5 191 49-280 4-223 (365)
161 4a5s_A Dipeptidyl peptidase 4 99.6 1.7E-12 6E-17 163.4 36.2 166 33-207 14-200 (740)
162 1jmx_B Amine dehydrogenase; ox 99.6 5.4E-13 1.8E-17 151.1 27.8 155 81-282 4-176 (349)
163 2oit_A Nucleoporin 214KDA; NH2 99.6 6.5E-14 2.2E-18 164.3 19.5 174 486-704 39-225 (434)
164 3pe7_A Oligogalacturonate lyas 99.5 1E-12 3.5E-17 151.6 25.7 157 65-271 19-209 (388)
165 3pe7_A Oligogalacturonate lyas 99.5 1.7E-12 5.8E-17 149.7 25.9 196 41-282 41-274 (388)
166 3azo_A Aminopeptidase; POP fam 99.5 7.7E-12 2.6E-16 155.5 28.6 200 32-279 20-270 (662)
167 1urq_A M-tomosyn isoform; tran 99.5 5.5E-14 1.9E-18 111.6 5.4 59 1039-1100 5-63 (63)
168 3azo_A Aminopeptidase; POP fam 99.4 6.6E-12 2.2E-16 156.1 27.0 164 72-280 19-225 (662)
169 3c5m_A Oligogalacturonate lyas 99.4 3.1E-12 1.1E-16 147.6 21.8 161 38-270 38-208 (396)
170 4a5s_A Dipeptidyl peptidase 4 99.4 3.6E-11 1.2E-15 151.4 32.8 168 76-280 16-201 (740)
171 2oiz_A Aromatic amine dehydrog 99.4 8E-11 2.7E-15 134.5 31.2 149 87-281 14-182 (361)
172 2oiz_A Aromatic amine dehydrog 99.4 4.3E-11 1.5E-15 136.7 28.1 146 46-213 14-187 (361)
173 1qks_A Cytochrome CD1 nitrite 99.4 1.6E-09 5.5E-14 130.3 38.9 202 42-282 162-374 (567)
174 2gop_A Trilobed protease; beta 99.3 3.8E-10 1.3E-14 127.7 28.9 111 77-212 15-164 (347)
175 1qks_A Cytochrome CD1 nitrite 99.3 4.5E-09 1.6E-13 126.4 38.6 112 86-215 165-281 (567)
176 1q7f_A NHL, brain tumor CG1071 99.2 4.7E-09 1.6E-13 115.2 30.2 199 34-280 28-237 (286)
177 2gop_A Trilobed protease; beta 99.2 2.6E-09 8.8E-14 120.8 28.4 94 37-137 16-123 (347)
178 3c5m_A Oligogalacturonate lyas 99.2 1.9E-10 6.5E-15 132.6 19.3 99 101-216 13-118 (396)
179 2dg1_A DRP35, lactonase; beta 99.2 1.9E-09 6.3E-14 121.4 24.7 193 37-280 7-212 (333)
180 3fvz_A Peptidyl-glycine alpha- 99.2 6.1E-09 2.1E-13 117.1 28.2 212 35-283 23-279 (329)
181 1q7f_A NHL, brain tumor CG1071 99.2 5.9E-09 2E-13 114.4 26.1 198 36-282 77-281 (286)
182 2xdw_A Prolyl endopeptidase; a 99.1 6.3E-09 2.1E-13 130.3 29.2 150 45-209 81-268 (710)
183 2bkl_A Prolyl endopeptidase; m 99.1 2.9E-09 9.8E-14 133.0 26.0 157 45-216 77-268 (695)
184 3e5z_A Putative gluconolactona 99.1 1.3E-08 4.5E-13 112.3 26.6 194 35-280 27-245 (296)
185 2z2n_A Virginiamycin B lyase; 99.1 2.8E-07 9.6E-12 101.1 37.1 195 35-279 14-211 (299)
186 3fvz_A Peptidyl-glycine alpha- 99.1 9E-09 3.1E-13 115.8 25.3 202 34-281 89-322 (329)
187 2z2n_A Virginiamycin B lyase; 99.1 3.4E-07 1.2E-11 100.4 36.3 155 75-279 13-169 (299)
188 1xip_A Nucleoporin NUP159; bet 99.1 3.3E-09 1.1E-13 120.3 18.9 178 37-267 39-230 (388)
189 2dg1_A DRP35, lactonase; beta 99.0 7.1E-08 2.4E-12 108.2 28.7 206 33-280 42-262 (333)
190 1yr2_A Prolyl oligopeptidase; 99.0 3.6E-08 1.2E-12 124.0 27.7 150 45-210 116-304 (741)
191 2xdw_A Prolyl endopeptidase; a 99.0 1.4E-08 4.9E-13 127.0 22.3 200 34-281 123-368 (710)
192 3e5z_A Putative gluconolactona 99.0 5.4E-08 1.9E-12 107.3 23.9 198 34-282 67-287 (296)
193 2qc5_A Streptogramin B lactona 99.0 2.1E-06 7.2E-11 94.1 36.4 195 35-279 19-216 (300)
194 3no2_A Uncharacterized protein 98.9 2.7E-08 9.1E-13 108.7 19.5 189 46-283 4-197 (276)
195 1rwi_B Serine/threonine-protei 98.9 1.2E-07 4E-12 102.8 24.5 196 37-282 25-223 (270)
196 3sjl_D Methylamine dehydrogena 98.9 2.9E-07 9.9E-12 103.9 26.8 154 82-281 38-208 (386)
197 1pjx_A Dfpase, DIISOPROPYLFLUO 98.9 8.2E-07 2.8E-11 98.4 30.0 213 25-282 7-257 (314)
198 2qc5_A Streptogramin B lactona 98.9 3.5E-06 1.2E-10 92.3 34.4 155 75-279 18-174 (300)
199 2bkl_A Prolyl endopeptidase; m 98.9 2.9E-08 1E-12 123.8 19.4 197 33-280 118-348 (695)
200 2mad_H Methylamine dehydrogena 98.9 4.7E-06 1.6E-10 95.0 35.8 118 84-215 28-162 (373)
201 1yr2_A Prolyl oligopeptidase; 98.8 6.1E-07 2.1E-11 112.7 29.6 152 490-703 274-443 (741)
202 1rwi_B Serine/threonine-protei 98.8 1.3E-07 4.5E-12 102.4 19.9 197 36-282 67-265 (270)
203 3dsm_A Uncharacterized protein 98.8 1.1E-06 3.9E-11 98.4 27.7 193 36-283 44-255 (328)
204 3sjl_D Methylamine dehydrogena 98.8 8.9E-07 3E-11 99.9 26.3 192 41-282 38-257 (386)
205 4a2l_A BT_4663, two-component 98.8 0.0018 6.1E-08 81.7 64.2 198 36-282 88-292 (795)
206 1xip_A Nucleoporin NUP159; bet 98.8 5.1E-08 1.8E-12 110.5 15.1 143 78-282 39-192 (388)
207 3g4e_A Regucalcin; six bladed 98.7 1.6E-06 5.6E-11 95.5 25.4 195 32-271 50-262 (297)
208 3hrp_A Uncharacterized protein 98.7 4.1E-07 1.4E-11 105.3 20.4 216 37-282 132-355 (409)
209 3q7m_A Lipoprotein YFGL, BAMB; 98.7 2.7E-05 9.2E-10 88.8 34.9 147 87-282 52-208 (376)
210 4a2l_A BT_4663, two-component 98.7 0.0021 7.3E-08 81.0 55.5 203 38-282 175-387 (795)
211 3dsm_A Uncharacterized protein 98.7 5.5E-07 1.9E-11 101.0 19.9 197 34-280 82-301 (328)
212 2mad_H Methylamine dehydrogena 98.7 3.9E-06 1.3E-10 95.6 27.1 204 40-283 70-352 (373)
213 3no2_A Uncharacterized protein 98.6 2.3E-06 7.8E-11 93.2 23.1 166 28-217 27-203 (276)
214 3hrp_A Uncharacterized protein 98.6 3.4E-06 1.2E-10 97.5 25.8 165 78-280 132-297 (409)
215 1pjx_A Dfpase, DIISOPROPYLFLUO 98.6 4.5E-06 1.5E-10 92.3 24.6 202 34-282 69-300 (314)
216 3c75_H MADH, methylamine dehyd 98.6 6.8E-06 2.3E-10 94.4 26.4 118 86-216 82-216 (426)
217 3g4e_A Regucalcin; six bladed 98.6 6.2E-06 2.1E-10 90.9 24.7 198 38-282 15-230 (297)
218 2ghs_A AGR_C_1268P; regucalcin 98.5 1.4E-05 4.6E-10 89.4 26.1 194 33-272 87-293 (326)
219 2ghs_A AGR_C_1268P; regucalcin 98.5 2.5E-05 8.5E-10 87.3 27.2 190 38-280 51-259 (326)
220 1kb0_A Quinohemoprotein alcoho 98.5 5E-05 1.7E-09 93.7 32.0 112 88-217 77-207 (677)
221 3q7m_A Lipoprotein YFGL, BAMB; 98.5 9E-05 3.1E-09 84.4 32.1 171 24-216 26-214 (376)
222 3dr2_A Exported gluconolactona 98.4 6.1E-06 2.1E-10 91.3 20.0 191 35-276 85-302 (305)
223 3iuj_A Prolyl endopeptidase; h 98.4 3.2E-06 1.1E-10 105.2 18.5 195 34-281 127-359 (693)
224 3v9f_A Two-component system se 98.4 0.015 5E-07 73.1 57.4 207 36-282 66-288 (781)
225 2qe8_A Uncharacterized protein 98.4 2.7E-05 9.2E-10 87.7 24.1 227 27-281 10-278 (343)
226 3iuj_A Prolyl endopeptidase; h 98.4 6.4E-06 2.2E-10 102.4 20.3 121 74-210 126-269 (693)
227 3dr2_A Exported gluconolactona 98.3 3.3E-05 1.1E-09 85.3 22.7 155 36-211 45-226 (305)
228 3c75_H MADH, methylamine dehyd 98.3 1.4E-05 4.7E-10 91.9 19.5 206 40-283 122-404 (426)
229 1l4a_A Synaptobrevin; snare, s 98.3 2.7E-07 9.2E-12 78.2 3.7 64 1036-1106 13-76 (80)
230 1yiq_A Quinohemoprotein alcoho 98.3 0.00018 6.3E-09 88.8 30.8 112 88-217 70-200 (689)
231 1kb0_A Quinohemoprotein alcoho 98.3 0.00012 4.2E-09 90.1 28.3 189 489-708 248-514 (677)
232 1yiq_A Quinohemoprotein alcoho 98.3 0.00022 7.6E-09 88.0 29.6 191 489-708 240-512 (689)
233 3ei3_A DNA damage-binding prot 98.2 0.04 1.4E-06 71.4 65.5 119 538-705 515-642 (1158)
234 1n7s_A Vesicle-associated memb 98.2 1.2E-06 4.2E-11 70.5 5.1 48 1052-1099 15-62 (63)
235 3v9f_A Two-component system se 98.2 0.037 1.3E-06 69.4 55.4 212 37-282 116-343 (781)
236 1sfc_A VAMP 2, protein (synapt 98.2 1.7E-06 5.8E-11 75.8 5.8 60 1037-1099 29-88 (96)
237 2qe8_A Uncharacterized protein 98.1 7.5E-05 2.6E-09 84.0 19.9 200 34-277 65-317 (343)
238 2hz6_A Endoplasmic reticulum t 98.1 3.9E-07 1.3E-11 104.0 0.5 180 46-282 8-193 (369)
239 1mda_H Methylamine dehydrogena 98.1 2.6E-05 8.8E-10 88.1 13.8 68 40-107 69-158 (368)
240 2iwa_A Glutamine cyclotransfer 98.0 0.00095 3.2E-08 71.1 23.8 223 23-282 6-238 (266)
241 3nol_A Glutamine cyclotransfer 98.0 0.00088 3E-08 70.6 22.5 214 21-270 26-244 (262)
242 2ece_A 462AA long hypothetical 98.0 0.0011 3.6E-08 75.4 24.3 166 38-208 140-351 (462)
243 1npe_A Nidogen, entactin; glyc 97.9 0.0016 5.4E-08 70.0 25.2 157 37-212 37-201 (267)
244 2nps_A VAMP-4, vesicle-associa 97.9 9.5E-06 3.3E-10 67.6 5.6 63 1037-1106 7-69 (74)
245 3hd7_A Vesicle-associated memb 97.9 9.4E-06 3.2E-10 70.5 5.6 48 1052-1099 16-63 (91)
246 1mda_H Methylamine dehydrogena 97.9 0.00085 2.9E-08 75.6 23.4 75 541-641 268-353 (368)
247 3mbr_X Glutamine cyclotransfer 97.9 0.0037 1.3E-07 65.3 24.9 214 22-270 5-223 (243)
248 3hxj_A Pyrrolo-quinoline quino 97.9 0.00097 3.3E-08 73.8 22.2 100 89-215 31-131 (330)
249 2hz6_A Endoplasmic reticulum t 97.8 2.9E-06 1E-10 96.7 0.9 145 494-706 8-154 (369)
250 3s94_A LRP-6, low-density lipo 97.8 0.14 4.6E-06 62.0 55.5 160 36-212 40-205 (619)
251 3b5n_A Synaptobrevin homolog 1 97.8 3.8E-05 1.3E-09 61.2 5.9 47 1053-1099 14-60 (61)
252 2kog_A Vesicle-associated memb 97.7 1.5E-06 5.1E-11 79.3 -3.0 48 1052-1099 44-91 (119)
253 2fp8_A Strictosidine synthase; 97.7 0.011 3.9E-07 65.2 28.2 155 37-209 20-216 (322)
254 1kv9_A Type II quinohemoprotei 97.7 0.0074 2.5E-07 74.1 29.0 112 88-217 66-195 (668)
255 1kv9_A Type II quinohemoprotei 97.7 0.0053 1.8E-07 75.4 27.2 60 623-708 436-495 (668)
256 3qqz_A Putative uncharacterize 97.7 0.011 3.9E-07 62.3 25.7 171 31-210 22-205 (255)
257 1w6s_A Methanol dehydrogenase 97.7 0.022 7.5E-07 68.5 31.2 113 88-217 62-199 (599)
258 1fwx_A Nitrous oxide reductase 97.6 0.001 3.5E-08 78.2 18.1 216 45-281 99-361 (595)
259 3nok_A Glutaminyl cyclase; bet 97.6 0.0027 9.3E-08 66.8 19.4 170 27-217 44-218 (268)
260 1flg_A Protein (quinoprotein e 97.6 0.09 3.1E-06 63.1 35.8 59 624-708 465-523 (582)
261 4a0p_A LRP6, LRP-6, low-densit 97.6 0.25 8.5E-06 59.7 55.1 157 36-210 37-198 (628)
262 2ad6_A Methanol dehydrogenase 97.6 0.021 7.1E-07 68.6 29.5 112 88-217 62-193 (571)
263 2ece_A 462AA long hypothetical 97.5 0.0064 2.2E-07 69.0 22.4 205 45-281 93-352 (462)
264 1fwx_A Nitrous oxide reductase 97.5 0.0038 1.3E-07 73.4 19.7 162 36-209 134-361 (595)
265 2ad6_A Methanol dehydrogenase 97.5 0.052 1.8E-06 65.1 30.4 60 623-708 442-501 (571)
266 1gl2_A Endobrevin; membrane pr 97.4 0.00014 4.9E-09 58.7 4.8 57 1037-1096 8-64 (65)
267 3mbr_X Glutamine cyclotransfer 97.3 0.044 1.5E-06 57.1 23.9 167 68-283 10-181 (243)
268 2fp8_A Strictosidine synthase; 97.3 0.02 6.7E-07 63.2 22.7 198 37-281 81-313 (322)
269 1npe_A Nidogen, entactin; glyc 97.3 0.038 1.3E-06 58.9 24.0 183 48-280 2-197 (267)
270 2xe4_A Oligopeptidase B; hydro 97.3 0.0084 2.9E-07 74.8 21.2 111 37-148 175-302 (751)
271 2p4o_A Hypothetical protein; p 97.2 0.022 7.6E-07 62.4 22.0 210 27-280 23-241 (306)
272 3ei3_A DNA damage-binding prot 97.2 1 3.5E-05 58.3 51.7 117 36-155 514-643 (1158)
273 3nol_A Glutamine cyclotransfer 97.2 0.014 4.7E-07 61.5 18.3 165 70-283 34-203 (262)
274 3nok_A Glutaminyl cyclase; bet 97.2 0.012 4.1E-07 61.9 17.4 165 69-283 45-212 (268)
275 2iwa_A Glutamine cyclotransfer 97.1 0.024 8.3E-07 60.2 20.0 164 72-283 14-183 (266)
276 1k3i_A Galactose oxidase precu 97.0 0.13 4.5E-06 62.8 28.3 80 121-214 189-279 (656)
277 1ijq_A LDL receptor, low-densi 97.0 0.2 7E-06 54.9 27.0 156 36-210 30-196 (316)
278 1flg_A Protein (quinoprotein e 96.9 0.7 2.4E-05 55.3 32.8 105 47-155 68-198 (582)
279 3amr_A 3-phytase; beta-propell 96.9 0.22 7.5E-06 54.6 24.7 189 44-280 37-262 (355)
280 3hxj_A Pyrrolo-quinoline quino 96.8 0.02 6.9E-07 62.9 16.9 175 47-279 107-282 (330)
281 3v64_C Agrin; beta propeller, 96.8 0.35 1.2E-05 53.8 27.1 158 36-210 73-235 (349)
282 3v65_B Low-density lipoprotein 96.8 0.23 7.8E-06 56.2 25.8 158 36-210 116-278 (386)
283 3p5b_L Low density lipoprotein 96.7 0.39 1.3E-05 54.6 27.0 159 35-212 111-280 (400)
284 1k3i_A Galactose oxidase precu 96.7 0.065 2.2E-06 65.6 21.6 113 35-147 185-322 (656)
285 3sov_A LRP-6, low-density lipo 96.7 0.2 6.9E-06 54.9 23.4 197 37-283 36-240 (318)
286 3amr_A 3-phytase; beta-propell 96.7 0.077 2.6E-06 58.2 19.2 181 17-213 50-268 (355)
287 3tc9_A Hypothetical hydrolase; 96.6 0.034 1.2E-06 64.1 17.6 155 37-209 138-301 (430)
288 2p4o_A Hypothetical protein; p 96.6 0.26 8.9E-06 53.6 23.9 194 32-272 68-279 (306)
289 3qqz_A Putative uncharacterize 96.5 0.75 2.6E-05 48.4 24.9 173 75-281 25-204 (255)
290 3v64_C Agrin; beta propeller, 96.4 0.51 1.8E-05 52.4 25.0 197 35-281 33-234 (349)
291 3m0c_C LDL receptor, low-densi 96.4 0.52 1.8E-05 58.3 26.6 161 35-212 423-592 (791)
292 4hw6_A Hypothetical protein, I 96.3 0.27 9.2E-06 56.6 22.3 231 33-280 179-432 (433)
293 3tc9_A Hypothetical hydrolase; 96.2 0.14 4.7E-06 59.0 18.9 158 78-280 138-300 (430)
294 3v65_B Low-density lipoprotein 96.2 0.77 2.6E-05 51.8 24.8 194 37-281 78-277 (386)
295 3pbp_A Nucleoporin NUP82; beta 96.1 0.2 6.9E-06 56.0 18.5 162 85-278 29-209 (452)
296 2p9w_A MAL S 1 allergenic prot 96.0 0.21 7.3E-06 54.2 18.1 158 38-209 15-215 (334)
297 2xbg_A YCF48-like protein; pho 96.0 0.54 1.9E-05 51.7 21.9 197 34-279 120-320 (327)
298 2nut_C Vesicle-trafficking pro 95.7 0.0016 5.6E-08 66.1 -0.1 49 1054-1106 147-195 (196)
299 4hw6_A Hypothetical protein, I 95.6 0.76 2.6E-05 52.8 22.0 154 37-208 140-303 (433)
300 1w6s_A Methanol dehydrogenase 95.6 0.84 2.9E-05 54.7 23.0 73 81-155 245-347 (599)
301 3kya_A Putative phosphatase; s 95.6 1.3 4.5E-05 51.2 23.5 157 37-209 140-341 (496)
302 1ijq_A LDL receptor, low-densi 95.6 2.2 7.6E-05 46.4 24.7 183 49-281 3-195 (316)
303 2xe4_A Oligopeptidase B; hydro 95.5 0.58 2E-05 58.0 21.9 111 39-149 224-353 (751)
304 1n7d_A LDL receptor, low-densi 95.2 0.055 1.9E-06 66.5 11.1 158 36-211 406-573 (699)
305 4b93_A Vesicle-associated memb 95.2 0.00039 1.3E-08 70.0 -6.7 48 1055-1106 139-186 (189)
306 3kya_A Putative phosphatase; s 94.9 0.54 1.8E-05 54.5 17.3 116 79-208 141-277 (496)
307 3p5b_L Low density lipoprotein 94.8 5.3 0.00018 45.1 25.4 184 48-281 84-277 (400)
308 3m0c_C LDL receptor, low-densi 94.3 3.8 0.00013 50.7 24.1 194 37-281 386-589 (791)
309 2xbg_A YCF48-like protein; pho 94.1 1.4 4.6E-05 48.4 17.9 153 32-206 159-319 (327)
310 3sov_A LRP-6, low-density lipo 94.0 2.9 9.9E-05 45.6 20.1 155 37-211 80-240 (318)
311 2p9w_A MAL S 1 allergenic prot 93.9 1.9 6.5E-05 46.8 17.8 158 494-700 24-214 (334)
312 3pbp_A Nucleoporin NUP82; beta 93.4 0.49 1.7E-05 52.9 12.3 106 37-143 67-207 (452)
313 2xzh_A Clathrin heavy chain 1; 92.6 13 0.00045 40.0 23.6 116 40-164 71-199 (365)
314 3sre_A PON1, serum paraoxonase 92.2 16 0.00056 40.1 25.2 157 33-209 47-252 (355)
315 2ism_A Putative oxidoreductase 91.9 6.7 0.00023 43.3 19.5 109 23-136 20-152 (352)
316 3a9g_A Putative uncharacterize 91.5 2.7 9.1E-05 46.7 15.5 98 36-135 29-151 (354)
317 1bpo_A Protein (clathrin); cla 90.5 26 0.00089 39.4 26.3 206 39-282 69-332 (494)
318 1n7d_A LDL receptor, low-densi 90.5 1.1 3.9E-05 54.8 12.2 159 490-708 459-621 (699)
319 3kyq_A YKT6, synaptobrevin hom 89.9 0.023 7.9E-07 57.2 -3.0 42 1054-1095 151-192 (199)
320 2g8s_A Glucose/sorbosone dehyd 89.4 4.8 0.00016 44.5 15.3 100 37-137 19-148 (353)
321 3s94_A LRP-6, low-density lipo 89.2 43 0.0015 40.0 50.5 178 55-281 16-202 (619)
322 4a0p_A LRP6, LRP-6, low-densit 88.4 48 0.0017 39.6 55.0 183 48-281 7-197 (628)
323 3uc1_A DNA gyrase subunit A; D 87.6 35 0.0012 37.0 22.1 161 37-210 96-280 (327)
324 3sre_A PON1, serum paraoxonase 87.0 33 0.0011 37.7 19.7 156 78-281 51-252 (355)
325 3ott_A Two-component system se 86.6 67 0.0023 39.3 52.9 152 36-214 103-265 (758)
326 2vpj_A Kelch-like protein 12; 86.1 13 0.00045 39.5 15.9 109 494-638 112-235 (301)
327 2xn4_A Kelch-like protein 2; s 85.9 15 0.00053 38.9 16.4 109 494-638 108-233 (302)
328 2vpj_A Kelch-like protein 12; 85.8 26 0.00091 37.0 18.3 152 46-215 62-237 (301)
329 1tl2_A L10, protein (tachylect 85.7 2.1 7.3E-05 43.4 8.3 97 37-140 42-155 (236)
330 1cru_A Protein (soluble quinop 84.8 35 0.0012 39.0 19.4 60 78-137 28-99 (454)
331 2ism_A Putative oxidoreductase 84.8 27 0.00093 38.3 18.0 60 36-95 75-153 (352)
332 3ii7_A Kelch-like protein 7; p 84.3 13 0.00046 39.6 15.0 64 494-568 101-179 (306)
333 3s25_A Hypothetical 7-bladed b 83.8 49 0.0017 35.3 19.0 142 44-215 22-182 (302)
334 2xn4_A Kelch-like protein 2; s 83.8 28 0.00097 36.8 17.3 151 46-215 61-235 (302)
335 1cru_A Protein (soluble quinop 83.4 17 0.00057 41.7 15.9 98 37-134 28-160 (454)
336 4asc_A Kelch repeat and BTB do 82.2 17 0.00058 39.0 14.8 25 614-638 196-225 (315)
337 3ii7_A Kelch-like protein 7; p 81.4 31 0.0011 36.6 16.5 66 46-111 55-131 (306)
338 3a9g_A Putative uncharacterize 79.6 43 0.0015 36.7 17.0 59 77-137 29-95 (354)
339 3hd7_A Vesicle-associated memb 79.4 2.8 9.6E-05 36.0 5.5 52 1055-1106 12-66 (91)
340 1xi4_A Clathrin heavy chain; a 79.1 30 0.001 44.9 16.7 105 40-147 70-187 (1630)
341 2g8s_A Glucose/sorbosone dehyd 78.4 30 0.001 37.9 15.3 59 78-137 19-88 (353)
342 1zgk_A Kelch-like ECH-associat 77.0 64 0.0022 34.1 17.3 151 45-214 23-198 (308)
343 1suu_A DNA gyrase subunit A; t 76.9 83 0.0029 33.7 22.2 200 45-281 6-231 (312)
344 1zgk_A Kelch-like ECH-associat 76.9 30 0.001 36.8 14.6 109 494-638 121-244 (308)
345 1tl2_A L10, protein (tachylect 76.7 4.1 0.00014 41.3 6.6 117 484-628 41-157 (236)
346 2woz_A Kelch repeat and BTB do 76.4 30 0.001 37.0 14.4 64 494-568 109-185 (318)
347 3das_A Putative oxidoreductase 72.8 86 0.003 34.1 16.7 59 77-135 32-100 (347)
348 2woz_A Kelch repeat and BTB do 71.3 1.1E+02 0.0037 32.4 17.9 111 44-155 54-189 (318)
349 4gq2_M Nucleoporin NUP120; bet 71.1 35 0.0012 43.1 14.9 37 78-114 237-273 (950)
350 2be1_A Serine/threonine-protei 70.5 11 0.00038 41.1 8.8 79 615-708 56-137 (339)
351 3no0_A DNA gyrase subunit A; D 67.7 1.2E+02 0.0042 31.6 19.9 162 36-210 68-247 (276)
352 3ott_A Two-component system se 67.5 2.2E+02 0.0076 34.5 65.4 198 35-282 21-221 (758)
353 3s25_A Hypothetical 7-bladed b 67.5 1.3E+02 0.0045 31.9 20.4 105 41-152 109-218 (302)
354 4asc_A Kelch repeat and BTB do 67.2 1.3E+02 0.0044 31.7 21.0 154 43-215 42-227 (315)
355 2be1_A Serine/threonine-protei 66.8 19 0.00066 39.2 9.7 116 89-218 11-139 (339)
356 3das_A Putative oxidoreductase 66.4 39 0.0013 36.9 12.2 71 37-107 33-116 (347)
357 2uvk_A YJHT; unknown function, 66.4 35 0.0012 37.1 12.3 16 505-520 168-183 (357)
358 1sfc_A VAMP 2, protein (synapt 63.6 11 0.00037 32.7 5.5 53 1054-1106 36-91 (96)
359 3sbq_A Nitrous-oxide reductase 63.4 22 0.00074 41.2 9.4 104 33-136 320-453 (638)
360 3b7f_A Glycosyl hydrolase, BNR 60.4 1.6E+02 0.0054 32.3 16.4 156 35-200 54-254 (394)
361 2zwa_A Leucine carboxyl methyl 60.1 2E+02 0.0067 34.7 18.2 111 45-155 396-527 (695)
362 1zvt_A Topoisomerase IV subuni 59.4 1.4E+02 0.0047 30.9 14.4 149 48-209 3-163 (256)
363 2zwa_A Leucine carboxyl methyl 54.5 1.5E+02 0.005 35.8 15.7 65 494-568 451-523 (695)
364 1xi4_A Clathrin heavy chain; a 54.3 2.6E+02 0.0088 36.6 17.7 121 490-655 72-205 (1630)
365 3b7f_A Glycosyl hydrolase, BNR 52.9 2.6E+02 0.0088 30.5 17.2 145 37-197 116-297 (394)
366 3f7f_A Nucleoporin NUP120; nuc 51.7 39 0.0013 40.5 9.4 81 32-116 158-259 (729)
367 3sbq_A Nitrous-oxide reductase 51.7 68 0.0023 37.2 10.9 83 540-635 326-409 (638)
368 3mvd_K Regulator of chromosome 50.6 2.9E+02 0.01 30.5 28.7 110 78-208 76-206 (423)
369 1zi0_A DNA gyrase subunit A; b 48.5 2.7E+02 0.0092 29.5 19.2 151 46-209 108-277 (307)
370 4fhn_B Nucleoporin NUP120; pro 45.4 52 0.0018 42.6 10.0 38 78-115 239-276 (1139)
371 2wg3_C Hedgehog-interacting pr 44.2 2.2E+02 0.0075 32.3 14.1 59 37-95 15-91 (463)
372 4gq2_M Nucleoporin NUP120; bet 40.4 6.4E+02 0.022 31.5 25.5 135 80-216 114-273 (950)
373 2l5g_B Putative uncharacterize 38.1 36 0.0012 24.0 3.6 35 1041-1078 5-39 (42)
374 1sqj_A OXG-RCBH, oligoxylogluc 36.4 6E+02 0.02 30.9 17.3 152 35-199 14-190 (789)
375 3l6v_A GYRA, DNA gyrase subuni 36.3 4.6E+02 0.016 28.6 21.2 102 46-147 112-264 (370)
376 4fhn_B Nucleoporin NUP120; pro 36.1 1.2E+02 0.0042 39.0 11.4 31 538-568 239-269 (1139)
377 3etw_A Adhesin A; antiparallel 36.1 51 0.0017 29.5 5.3 48 1054-1101 33-82 (119)
378 3kci_A Probable E3 ubiquitin-p 35.8 4.6E+02 0.016 28.5 27.8 146 47-208 62-240 (389)
379 3ryc_E Stathmin-4; alpha-tubul 33.4 1.5E+02 0.0051 27.3 8.0 62 1036-1101 41-105 (143)
380 3efd_K KCSA; helix bundle, C-t 32.7 52 0.0018 20.7 3.3 20 1055-1074 7-26 (30)
381 2uvk_A YJHT; unknown function, 31.1 5E+02 0.017 27.5 25.2 21 494-514 19-40 (357)
382 3l6v_A GYRA, DNA gyrase subuni 30.7 5.5E+02 0.019 27.9 24.5 151 45-209 5-180 (370)
383 2xzh_A Clathrin heavy chain 1; 30.3 5.5E+02 0.019 27.7 32.3 75 606-705 262-336 (365)
384 2avr_X Adhesion A; antiparalle 29.3 88 0.003 27.8 5.6 48 1054-1101 33-82 (119)
385 1wp5_A Topoisomerase IV; broke 29.2 5.4E+02 0.019 27.3 23.9 201 45-280 3-224 (323)
386 3b5n_A Synaptobrevin homolog 1 29.1 1.2E+02 0.0039 23.6 5.8 47 1055-1101 9-55 (61)
387 1bpo_A Protein (clathrin); cla 26.9 7.2E+02 0.025 27.9 30.7 75 606-705 261-335 (494)
388 1n7s_A Vesicle-associated memb 26.3 1.3E+02 0.0046 23.3 5.8 47 1055-1101 11-57 (63)
389 1zi0_A DNA gyrase subunit A; b 26.0 5.9E+02 0.02 26.7 25.2 201 45-280 1-225 (307)
390 2wg3_C Hedgehog-interacting pr 25.4 4.2E+02 0.014 29.9 12.3 57 79-135 16-89 (463)
391 1n7s_C SNAP-25A; neuronal snar 24.9 88 0.003 25.8 4.6 42 1056-1101 38-79 (79)
392 1gl2_A Endobrevin; membrane pr 23.5 2E+02 0.007 22.5 6.4 48 1054-1101 15-62 (65)
393 3qhy_B Beta-lactamase inhibito 22.5 6.5E+02 0.022 25.9 18.5 141 37-208 64-206 (282)
394 3kci_A Probable E3 ubiquitin-p 21.7 7.8E+02 0.027 26.6 31.7 109 84-208 58-186 (389)
395 1nhl_A Synaptosomal-associated 21.1 1.6E+02 0.0056 22.1 5.1 38 1057-1098 16-53 (54)
No 1
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-64 Score=643.40 Aligned_cols=779 Identities=15% Similarity=0.177 Sum_probs=535.0
Q ss_pred cccccceeeeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcE
Q 001287 21 AADLNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEI 100 (1107)
Q Consensus 21 ~~~~~~~~~~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I 100 (1107)
++.++++...++||++.|++++|+|++++||+|+.||.|+||+....+......|..+|.+|+|+| +.+|++++.|++|
T Consensus 3 ~~~~~~~~~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v 81 (902)
T 2oaj_A 3 NKIFSLAETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTV 81 (902)
T ss_dssp CTTEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEE
T ss_pred hheeeeccccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeE
Confidence 567899999999999999999999999999999999999999998888887788999999999999 6799999999999
Q ss_pred EEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeE
Q 001287 101 QVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1107)
Q Consensus 101 ~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1107)
+|||+.+++.+..+.+.+.|++++|+|++++|++|+.||.|++|+++. +.+. +|.++... +.......+..+|.
T Consensus 82 ~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~--~~~~--~~~i~~~~--~~~~~~~~h~~~V~ 155 (902)
T 2oaj_A 82 YVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDR--DQLS--SFKLDNLQ--KSSFFPAARLSPIV 155 (902)
T ss_dssp EEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTT--TEEE--EEEECCHH--HHHTCSSSCCCCCC
T ss_pred EEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCC--Cccc--cceecccc--ccccccccCCCCeE
Confidence 999999999988888889999999999999999999999999999874 3432 34442110 00011133448899
Q ss_pred EEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecC
Q 001287 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1107)
Q Consensus 181 ~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp 260 (1107)
+++|+|. ++.++++|+.||.| +||+.+++....+... . +.+.+..... ......+...|++++|. |
T Consensus 156 sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~-------~---~~g~~~~~~~-~~~~~~h~~~V~~v~fs-p 221 (902)
T 2oaj_A 156 SIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYE-------L---PPFAPGGDFS-EKTNEKRTPKVIQSLYH-P 221 (902)
T ss_dssp EEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCC-------B---CTTCCCSTTC-CCTTSCBCCCEEEEEEC-T
T ss_pred EEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecc-------c---CCcCCCcccc-cccccccCCCeEEEEEc-C
Confidence 9999995 34569999999999 9999999876554320 0 0111111000 01111235679999986 9
Q ss_pred CCCEEEEEEcCCcEEEEeCCCCCCCCC--ccC-CCCCceeeeecccc--cCccceEEEEeecccccCCCCCceEEEEeCC
Q 001287 261 SGSILAVGYIDGDILLWNTSTTASTKG--QQT-GSRNNVVKLELSSA--ERRLPVIVLHWSTNKESRSNIDGRLFVYGGD 335 (1107)
Q Consensus 261 dg~~l~sg~~dG~I~lWd~~~~~~~~~--~~~-~~~~~~~~l~~~~~--~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~ 335 (1107)
+|.+|++|+.||+|++||+.+++.... ... ....+.. ..... ....+|..+.|+... .+.++.++++|+.
T Consensus 222 dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~--~~~~~~~~~~~~V~~v~w~~~~---~pd~~~ll~sg~~ 296 (902)
T 2oaj_A 222 NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQP--DYIRDSSTNAAKISKVYWMCEN---NPEYTSLLISHKS 296 (902)
T ss_dssp TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCT--TCCCCCSSCCCEEEEEEEEECS---STTEEEEEEEEEC
T ss_pred CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCC--cCCCCCccccCCeeEEEEEecC---CCCCCEEEEeCCC
Confidence 999999999999999999987643210 000 0000000 00000 123467888886632 2334577888866
Q ss_pred CCCC-cceEEEEEcCcccc------------ccccceeeeeeecCCCccceEEEccCCCC--CCCCCcceEEEEccCCeE
Q 001287 336 EIGS-EEVLTVLSLEWSSG------------MENLRCVSRVDITLTGSFADMILLSSAGA--TVGNHKADLFVLTSPGQL 400 (1107)
Q Consensus 336 ~~~~-~~~ltvl~l~~~~~------------~~~~~~~~~~~l~~~~~v~d~~~~p~~~~--~~~~~~~~l~vl~~~G~l 400 (1107)
+... ..++.++.+..+.. .....+...+.+.....+.++.+.++..+ .+.+++..+++++.+|.+
T Consensus 297 ~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l 376 (902)
T 2oaj_A 297 ISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEI 376 (902)
T ss_dssp STTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCE
T ss_pred CCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcE
Confidence 5432 23455554321100 00111222233344678899998885333 234556678888899999
Q ss_pred EEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccC
Q 001287 401 HFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSG 480 (1107)
Q Consensus 401 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g 480 (1107)
.+|+..... ........+..+..+.+.+++..+..... ..|....... ....|++.|
T Consensus 377 ~~~~~~~g~---------~~~~~~~~~~~l~~~~~~v~~~~~s~~~~-----~~w~~~~~~~---------~~~~~~l~G 433 (902)
T 2oaj_A 377 ETMLYPSGI---------FTDKASLFPQNLSWLRPLATTSMAASVPN-----KLWLGALSAA---------QNKDYLLKG 433 (902)
T ss_dssp EEEETTTCC---------EECCGGGSCGGGTTBTTBEEEEEEEEEEH-----HHHHHHHHTT---------BCCCCSCCC
T ss_pred EEEECCCCC---------cccccccCCCcccccCCCeeEEEEEEcCH-----HHHHHHHhcc---------cCCCCcccC
Confidence 999853211 11112233556667888999988765432 3465544322 122467777
Q ss_pred CCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeee-----cCCCCCeEEEEEEeCCCeEEEec
Q 001287 481 GVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEV-----AGSRAPVSTLSFCFINSSLAVGN 555 (1107)
Q Consensus 481 g~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l-----~~h~~~Vt~l~fspd~~~Lasg~ 555 (1107)
+.... ..++++|++++|+||+.||+||+||+..+.+.. .......+ .+|...|++|+|+||+++||+|+
T Consensus 434 ~~~~v-~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~-----~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs 507 (902)
T 2oaj_A 434 GVRTK-RQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD-----NASFEVNLSRTLNKAKELAVDKISFAAETLELAVSI 507 (902)
T ss_dssp SBCCC-CCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT-----TBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEE
T ss_pred CcCCC-CcccccccCcEEEEecCCCcEEEEECCCccccC-----CceEEeechhhcCCCCCCceeEEEecCCCCeEEEEe
Confidence 66544 345899999999999999999999999876421 01111122 28899999999999999999999
Q ss_pred cCceEEEEEecCCCC----------Ccccee----eccCcCcceec------ccCCcceeEEEEeecCcCEEEEEEcCCC
Q 001287 556 EFGLVYIYNLNGSLD----------AKNFLF----VLETKSEVHAL------PEGKISLCRAVFSLVNSPVRALQFTSSG 615 (1107)
Q Consensus 556 ~dg~V~vw~~~~~~~----------~~~~~~----~~~~~~~~~~~------~~~~g~~~~~~~~~h~~~Vt~la~sp~~ 615 (1107)
.||+|+||++..... +.+..| +.........+ ....+++++..+.+|.+.|++|+|||||
T Consensus 508 ~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG 587 (902)
T 2oaj_A 508 ETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG 587 (902)
T ss_dssp TTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS
T ss_pred cCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc
Confidence 999999999986521 101111 11111111110 1133678899999999999999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCeEEEEe--ecCC-CCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCc
Q 001287 616 AKLAVGFECGRVAVLDMNLLSVLFFT--DDIS-GSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDA 692 (1107)
Q Consensus 616 ~~la~Gs~dg~V~iwd~~~~~~~~~~--~~~~-~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg 692 (1107)
+||+|+.||+|+|||++++.+++.. ..+. +|...|++++|+-.... +.++++.+|++|+.|+
T Consensus 588 -~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~--------------~Dg~~~~~l~sgs~D~ 652 (902)
T 2oaj_A 588 -FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYG--------------DDGYSSILMVCGTDMG 652 (902)
T ss_dssp -EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECT--------------TSSSEEEEEEEEETTS
T ss_pred -EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecC--------------CCCCcceEEEEEecCC
Confidence 9999999999999999999887643 3454 89999999999932221 0012358999999999
Q ss_pred eEEEEeC---CCcceecCCCC--cccccceeeEEEEecCCCCCCccccccccccccccCCCCCCCCCCcccCCCcccccc
Q 001287 693 KISIVGG---SSENMISSSPW--HLKKKVIAISMEVIEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLF 767 (1107)
Q Consensus 693 ~v~v~d~---~~g~~i~~~~~--~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 767 (1107)
+|++||. .+|+.+..+.- ..++...++.+..++.....+.... .+
T Consensus 653 tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~------------------------------~~ 702 (902)
T 2oaj_A 653 EVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLAT------------------------------IP 702 (902)
T ss_dssp EEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCB------------------------------HH
T ss_pred cEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCC------------------------------HH
Confidence 9999998 78887654421 1222344455554541111000000 00
Q ss_pred ccccccCCCCCCCcEEEEEecCeeEEEeccccccccceeeeeecCCCcceeeee--ee------cCCceeEEEEEeecCc
Q 001287 768 SSENACSGESSNDALVLLCCEDSVRLYSRKSVIQGNNKTVQKVKHKNRCCWAST--IE------KDEKVCGLLLLFQTGA 839 (1107)
Q Consensus 768 ~~~~~~~~~~~~~~~~l~c~e~~l~v~sl~~~~~g~~~~i~k~~~~~~~~~~~~--~~------~~~~~~~l~~~~~~G~ 839 (1107)
..+.. ..+...+.++|+|+|+.+|||++++ .++++|. +..+|+++.+ |. ..+++++|+++++||+
T Consensus 703 ~~~~l-~~~~~~~~~~l~~~~~~ir~~~~~~-----~k~~~k~-~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~ 775 (902)
T 2oaj_A 703 KMQNL-SKGLCIPGIVLITGFDDIRLITLGK-----SKSTHKG-FKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGH 775 (902)
T ss_dssp HHHGG-GGTCCCCEEEEEECSSEEEEECTTC-----CCEEEEE-CSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSE
T ss_pred HHhcc-CCCCCCCeEEEEEeccceEEEeCcc-----ccceeeE-cccceeeeEEEEEEeccccccccCceEEEEEeCCCc
Confidence 00000 0111237899999999999999998 5788887 6767988887 44 3467999999999999
Q ss_pred EEEeecCCccccccccccceeeceecCccccccccc-CCcEE-EEcCceeEEEEeecCCCceecccCCcceeehh
Q 001287 840 VQIRSLPDLELVMESSLMSILRWNFKANMDKTISAD-NGQIT-LANGSEVAFVNLLAGENEFSILESSPCLHDKV 912 (1107)
Q Consensus 840 i~i~slp~l~~~~~~~~~~~~~~~~~~~~~~~~~~s-~Gq~~-l~~~~e~~~~s~~~~~~~~~~~~s~~~l~~~~ 912 (1107)
|+|||||+|+.+...++..+++.+ .+...+|+ +|+++ ++++.|+++++++.++..++-+ ...||.+.
T Consensus 776 i~~~s~p~l~~~~~~~~~~~~~~~----~~~~~~~~~~G~~~~~~~~~e~~~~~~~~~~~~~~~~--~~~l~~~~ 844 (902)
T 2oaj_A 776 LRVFTIPDFKEQMSEHIPFPIAAK----YITESSVLRNGDIAIRVSEFQASLFSTVKEQDTLAPV--SDTLYING 844 (902)
T ss_dssp EEEEETTTCCEEEEEECSSCCCHH----HHTTCEECTTSCEEEECSSSEEEEEEEESCCCCCCCC--CCBCCCTT
T ss_pred EEEEECcchHHHhhccCCcccccc----cccceEEcCCCCEEEEeChhheEEEEEEcCCCCCCCC--CceeeCCC
Confidence 999999999999988765533332 35667899 99955 4666999999999887777644 47889873
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.8e-49 Score=483.88 Aligned_cols=562 Identities=14% Similarity=0.201 Sum_probs=420.9
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCe
Q 001287 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1107)
Q Consensus 30 ~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~ 109 (1107)
...||.+.|+|++|+|||++||+|+.||.|+|||.++.....+.+|.++|++|+|+||+.+|++++.|++|+|||+....
T Consensus 11 ~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~~~~ 90 (577)
T 2ymu_A 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL 90 (577)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE
T ss_pred EECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCE
Confidence 34699999999999999999999999999999998877777888999999999999999999999999999999976544
Q ss_pred eeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCC
Q 001287 110 LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1107)
Q Consensus 110 ~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~ 189 (1107)
+.....|...|.+++|+|++++|++++.|+.+++|+... ... .....+. ..|.++.++| +
T Consensus 91 ~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~---~~~---~~~~~~~------------~~v~~~~~~~--~ 150 (577)
T 2ymu_A 91 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG---QLL---QTLTGHS------------SSVWGVAFSP--D 150 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC---CEE---EEECCCS------------SCEEEEEECT--T
T ss_pred EEEEECCCCCEEEEEECCCCCEEEEEcCCCceeeccccc---cee---eeccCCC------------Cceeeeeeec--C
Confidence 444447889999999999999999999999999998653 222 1233433 7799999988 5
Q ss_pred CCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEE
Q 001287 190 GNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1107)
Q Consensus 190 ~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~ 269 (1107)
+..++.++.++.+++|+...........+ ...|.+++|. |+|.+|++++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~v~~~~~~-~~~~~l~~~~ 199 (577)
T 2ymu_A 151 GQTIASASDDKTVKLWNRNGQLLQTLTGH------------------------------SSSVWGVAFS-PDGQTIASAS 199 (577)
T ss_dssp SSCEEEEETTSEEEEECTTSCEEEEEECC------------------------------SSCEEEEEEC-TTSSCEEEEE
T ss_pred CccceecccccceeccccceeeeeeccCC------------------------------Ccceeeeeec-CCCCEEEEEc
Confidence 67799999999999999887776666655 6789999975 9999999999
Q ss_pred cCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcC
Q 001287 270 IDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLE 349 (1107)
Q Consensus 270 ~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~ 349 (1107)
.||.|++||.... .+..+.. ...++..+ ++.+++.++++++.+. .+.+|
T Consensus 200 ~d~~v~~w~~~~~------------~~~~~~~----~~~~v~~~--------~~s~dg~~l~~~~~d~-------~i~~w 248 (577)
T 2ymu_A 200 DDKTVKLWNRNGQ------------LLQTLTG----HSSSVRGV--------AFSPDGQTIASASDDK-------TVKLW 248 (577)
T ss_dssp TTSEEEEECTTSC------------EEEEEEC----CSSCEEEE--------EECTTSSCEEEEETTS-------CEEEE
T ss_pred CCCEEEEEeCCCc------------EEEEEec----CCCCEEEE--------EECCCCCEEEEEeCCC-------EEEEE
Confidence 9999999996421 1111111 12233333 3566788899988887 77787
Q ss_pred ccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcc
Q 001287 350 WSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGV 429 (1107)
Q Consensus 350 ~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (1107)
...+. .+ .........+..+.+.|+.. .++..+.++.+.+|+.......
T Consensus 249 ~~~~~-~~----~~~~~~~~~v~~v~~~~d~~--------~l~~~~~d~~i~~w~~~~~~~~------------------ 297 (577)
T 2ymu_A 249 NRNGQ-LL----QTLTGHSSSVNGVAFRPDGQ--------TIASASDDKTVKLWNRNGQLLQ------------------ 297 (577)
T ss_dssp CTTSC-EE----EEECCCSSCEEEEEECTTSS--------EEEEEETTSCEEEEETTSCEEE------------------
T ss_pred eCCCC-EE----EEEecCCCCEEEEEEcCCCC--------EEEEEeCCCEEEEEeCCCcEEE------------------
Confidence 65431 11 11223345788888888742 5666778888888873211000
Q ss_pred cccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEE
Q 001287 430 IPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRI 509 (1107)
Q Consensus 430 ~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIri 509 (1107)
...+|...+..++++|+++.+++++.||+|++
T Consensus 298 ------------------------------------------------~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~ 329 (577)
T 2ymu_A 298 ------------------------------------------------TLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 329 (577)
T ss_dssp ------------------------------------------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ------------------------------------------------EEecCCCCeEEEEECCCCCEEEEEeCCCeEEE
Confidence 01122233345578899999999999999999
Q ss_pred EeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceeccc
Q 001287 510 WDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPE 589 (1107)
Q Consensus 510 Wd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (1107)
||.....+. .+.+|...|++++|+|++++|++++.||.|++|+....
T Consensus 330 w~~~~~~~~------------~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~--------------------- 376 (577)
T 2ymu_A 330 WNRNGQHLQ------------TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--------------------- 376 (577)
T ss_dssp EETTSCEEE------------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCC---------------------
T ss_pred EeCCCCeeE------------EEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCC---------------------
Confidence 998876543 36688899999999999999999999999999996442
Q ss_pred CCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCC
Q 001287 590 GKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNP 669 (1107)
Q Consensus 590 ~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p 669 (1107)
++..+..|...|++++|+|++++||+|+.|+.|++||..+. .+ ..+.+|..+|.+++|+
T Consensus 377 -----~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~-~~---~~~~~~~~~v~~~~~s------------ 435 (577)
T 2ymu_A 377 -----LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ-LL---QTLTGHSSSVWGVAFS------------ 435 (577)
T ss_dssp -----EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCC-EE---EEEECCSSCEEEEEEC------------
T ss_pred -----EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC-EE---EEecCCCCCeEEEEEC------------
Confidence 56677899999999999999999999999999999997654 33 3556799999999999
Q ss_pred CCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcceecCCCCcccccceeeEEEEecCCCCCCccccccccccccccCCCC
Q 001287 670 NHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVIEPVCGFPIEKQAEQSAEENAAKNKP 749 (1107)
Q Consensus 670 ~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~i~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 749 (1107)
|++.+|++++.|++|.+||. +++.+... .+
T Consensus 436 ----------~d~~~l~~~~~d~~v~~w~~-~~~~~~~~----------------~~----------------------- 465 (577)
T 2ymu_A 436 ----------PDDQTIASASDDKTVKLWNR-NGQLLQTL----------------TG----------------------- 465 (577)
T ss_dssp ----------TTSSEEEEEETTSEEEEEET-TSCEEEEE----------------EC-----------------------
T ss_pred ----------CCCCEEEEEcCCCEEEEEEC-CCCEEEEE----------------cC-----------------------
Confidence 66889999999999999996 34433221 00
Q ss_pred CCCCCCcccCCCccccccccccccCCCCCCCcEEEEEecC-eeEEEeccccccccceeeeeecCCCcceeeeeeecCCce
Q 001287 750 TPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCED-SVRLYSRKSVIQGNNKTVQKVKHKNRCCWASTIEKDEKV 828 (1107)
Q Consensus 750 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~c~e~-~l~v~sl~~~~~g~~~~i~k~~~~~~~~~~~~~~~~~~~ 828 (1107)
|...+..+.+.+. ..+++++++| .|+||++.. ..++...-....+.+..|. +++
T Consensus 466 ---------------~~~~v~~~~~spd--~~~las~~~d~~i~iw~~~~------~~~~~~~~h~~~v~~l~~s--~dg 520 (577)
T 2ymu_A 466 ---------------HSSSVRGVAFSPD--GQTIASASDDKTVKLWNRNG------QLLQTLTGHSSSVRGVAFS--PDG 520 (577)
T ss_dssp ---------------CSSCEEEEEECTT--SCEEEEEETTSEEEEEETTS------CEEEEEECCSSCEEEEEEC--TTS
T ss_pred ---------------CCCCEEEEEEcCC--CCEEEEEeCCCEEEEEcCCC------CEEEEEeCCCCCEEEEEEc--CCC
Confidence 1112222334433 6688888877 999998643 3333333222223333344 457
Q ss_pred eEEEEEeecCcEEEeecCCccccccccccceeeceecCccccccccc-CCcEEEEcC-ceeEEE
Q 001287 829 CGLLLLFQTGAVQIRSLPDLELVMESSLMSILRWNFKANMDKTISAD-NGQITLANG-SEVAFV 890 (1107)
Q Consensus 829 ~~l~~~~~~G~i~i~slp~l~~~~~~~~~~~~~~~~~~~~~~~~~~s-~Gq~~l~~~-~e~~~~ 890 (1107)
..|++...||.|+||+++. +.+.. ..-|.+.+..++|| ||+++++++ |..+++
T Consensus 521 ~~l~s~~~dg~v~lwd~~~-~~~~~--------~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~ 575 (577)
T 2ymu_A 521 QTIASASDDKTVKLWNRNG-QLLQT--------LTGHSSSVWGVAFSPDGQTIASASSDKTVKL 575 (577)
T ss_dssp SCEEEEETTSEEEEECTTS-CEEEE--------EECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred CEEEEEECcCEEEEEeCCC-CEEEE--------EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEE
Confidence 7899999999999999754 32222 23467788999999 999888877 665443
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=5e-45 Score=448.09 Aligned_cols=525 Identities=14% Similarity=0.217 Sum_probs=401.7
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCe
Q 001287 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1107)
Q Consensus 30 ~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~ 109 (1107)
...||.+.|++++|+|++++||+|+.|+.|+|||..+.....+.+|..+|.+++|+|++.+|++++.|+.+++|+.....
T Consensus 52 ~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~ 131 (577)
T 2ymu_A 52 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL 131 (577)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCE
T ss_pred EEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccce
Confidence 34689999999999999999999999999999999888777888999999999999999999999999999999998887
Q ss_pred eeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCC
Q 001287 110 LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1107)
Q Consensus 110 ~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~ 189 (1107)
......+...|.++.+++++..++.++.++.+++|..+. ... .....+. ..|.++.|+| +
T Consensus 132 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~------------~~v~~~~~~~--~ 191 (577)
T 2ymu_A 132 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---QLL---QTLTGHS------------SSVWGVAFSP--D 191 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS---CEE---EEEECCS------------SCEEEEEECT--T
T ss_pred eeeccCCCCceeeeeeecCCccceecccccceeccccce---eee---eeccCCC------------cceeeeeecC--C
Confidence 777778889999999999999999999999998887542 222 1133333 7799999988 6
Q ss_pred CCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEE
Q 001287 190 GNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1107)
Q Consensus 190 ~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~ 269 (1107)
+.+|++++.||.|++||........+.+| ...|.+++|. |+|.+|++++
T Consensus 192 ~~~l~~~~~d~~v~~w~~~~~~~~~~~~~------------------------------~~~v~~~~~s-~dg~~l~~~~ 240 (577)
T 2ymu_A 192 GQTIASASDDKTVKLWNRNGQLLQTLTGH------------------------------SSSVRGVAFS-PDGQTIASAS 240 (577)
T ss_dssp SSCEEEEETTSEEEEECTTSCEEEEEECC------------------------------SSCEEEEEEC-TTSSCEEEEE
T ss_pred CCEEEEEcCCCEEEEEeCCCcEEEEEecC------------------------------CCCEEEEEEC-CCCCEEEEEe
Confidence 77899999999999999876666666666 7789999985 9999999999
Q ss_pred cCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcC
Q 001287 270 IDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLE 349 (1107)
Q Consensus 270 ~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~ 349 (1107)
.||.|++||.... .+..+.. ...++..+ .+.+++..+++++.+. .+.+|
T Consensus 241 ~d~~i~~w~~~~~------------~~~~~~~----~~~~v~~v--------~~~~d~~~l~~~~~d~-------~i~~w 289 (577)
T 2ymu_A 241 DDKTVKLWNRNGQ------------LLQTLTG----HSSSVNGV--------AFRPDGQTIASASDDK-------TVKLW 289 (577)
T ss_dssp TTSCEEEECTTSC------------EEEEECC----CSSCEEEE--------EECTTSSEEEEEETTS-------CEEEE
T ss_pred CCCEEEEEeCCCC------------EEEEEec----CCCCEEEE--------EEcCCCCEEEEEeCCC-------EEEEE
Confidence 9999999996422 1111111 22233333 2556788899988887 67777
Q ss_pred ccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcc
Q 001287 350 WSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGV 429 (1107)
Q Consensus 350 ~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (1107)
...+. .+ .........+.++.+.|+.. .++..+.+|.+.+|+.......
T Consensus 290 ~~~~~-~~----~~~~~h~~~v~~~~~~~~~~--------~l~t~~~d~~i~~w~~~~~~~~------------------ 338 (577)
T 2ymu_A 290 NRNGQ-LL----QTLTGHSSSVWGVAFSPDGQ--------TIASASDDKTVKLWNRNGQHLQ------------------ 338 (577)
T ss_dssp ETTSC-EE----EEECCCSSCEEEEEECTTSS--------EEEEEETTSCEEEEETTSCEEE------------------
T ss_pred eCCCc-EE----EEEecCCCCeEEEEECCCCC--------EEEEEeCCCeEEEEeCCCCeeE------------------
Confidence 64431 11 11223445788888888743 5666778888888874321100
Q ss_pred cccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEE
Q 001287 430 IPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRI 509 (1107)
Q Consensus 430 ~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIri 509 (1107)
...++...+..++++|++++|++|+.||+|++
T Consensus 339 ------------------------------------------------~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~ 370 (577)
T 2ymu_A 339 ------------------------------------------------TLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 370 (577)
T ss_dssp ------------------------------------------------EECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ------------------------------------------------EEeCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 00112223344578899999999999999999
Q ss_pred EeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceeccc
Q 001287 510 WDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPE 589 (1107)
Q Consensus 510 Wd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (1107)
||.....+. .+.+|...|++++|+||+++|++++.|+.|++|+....
T Consensus 371 ~~~~~~~~~------------~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~--------------------- 417 (577)
T 2ymu_A 371 WNRNGQLLQ------------TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--------------------- 417 (577)
T ss_dssp EETTCCEEE------------EEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCC---------------------
T ss_pred EcCCCCEEE------------EecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC---------------------
Confidence 997654322 36689999999999999999999999999999985432
Q ss_pred CCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCC
Q 001287 590 GKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNP 669 (1107)
Q Consensus 590 ~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p 669 (1107)
++..+..|...|++++|+|++++||+|+.|+.|++||..+..+. .+.+|..+|.+++|+
T Consensus 418 -----~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~----~~~~~~~~v~~~~~s------------ 476 (577)
T 2ymu_A 418 -----LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQ----TLTGHSSSVRGVAFS------------ 476 (577)
T ss_dssp -----EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEE----EEECCSSCEEEEEEC------------
T ss_pred -----EEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEE----EEcCCCCCEEEEEEc------------
Confidence 56677899999999999999999999999999999998664433 556799999999999
Q ss_pred CCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcceecCCCCcccccceeeEEEEecCCCCCCccccccccccccccCCCC
Q 001287 670 NHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVIEPVCGFPIEKQAEQSAEENAAKNKP 749 (1107)
Q Consensus 670 ~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~i~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 749 (1107)
|++.+|++++.|+.|++||. +|+++.....
T Consensus 477 ----------pd~~~las~~~d~~i~iw~~-~~~~~~~~~~--------------------------------------- 506 (577)
T 2ymu_A 477 ----------PDGQTIASASDDKTVKLWNR-NGQLLQTLTG--------------------------------------- 506 (577)
T ss_dssp ----------TTSCEEEEEETTSEEEEEET-TSCEEEEEEC---------------------------------------
T ss_pred ----------CCCCEEEEEeCCCEEEEEcC-CCCEEEEEeC---------------------------------------
Confidence 66889999999999999995 5555432200
Q ss_pred CCCCCCcccCCCccccccccccccCCCCCCCcEEEEEecC-eeEEEeccccccccceeeeeecCCCcceeeeeeecCCce
Q 001287 750 TPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCED-SVRLYSRKSVIQGNNKTVQKVKHKNRCCWASTIEKDEKV 828 (1107)
Q Consensus 750 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~c~e~-~l~v~sl~~~~~g~~~~i~k~~~~~~~~~~~~~~~~~~~ 828 (1107)
|...+..+.+.+. ..+++++++| .|+||+++. ..++...-....+++..|..| +
T Consensus 507 ---------------h~~~v~~l~~s~d--g~~l~s~~~dg~v~lwd~~~------~~~~~~~~h~~~v~~~~fs~d--g 561 (577)
T 2ymu_A 507 ---------------HSSSVRGVAFSPD--GQTIASASDDKTVKLWNRNG------QLLQTLTGHSSSVWGVAFSPD--G 561 (577)
T ss_dssp ---------------CSSCEEEEEECTT--SSCEEEEETTSEEEEECTTS------CEEEEEECCSSCEEEEEECTT--S
T ss_pred ---------------CCCCEEEEEEcCC--CCEEEEEECcCEEEEEeCCC------CEEEEEcCCCCCEEEEEEcCC--C
Confidence 2222233344433 6688888877 999998654 344443323444556556554 6
Q ss_pred eEEEEEeecCcEEEee
Q 001287 829 CGLLLLFQTGAVQIRS 844 (1107)
Q Consensus 829 ~~l~~~~~~G~i~i~s 844 (1107)
..|+++..||+|++|+
T Consensus 562 ~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 562 QTIASASSDKTVKLWN 577 (577)
T ss_dssp SCEEEEETTSCEEEEC
T ss_pred CEEEEEeCCCEEEEeC
Confidence 6899999999999995
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.4e-44 Score=446.97 Aligned_cols=559 Identities=11% Similarity=0.107 Sum_probs=386.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCC-CcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCe--ee
Q 001287 35 PATASILAFDHIQRLLAIATLDGRIKVIGGD-GIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS--LA 111 (1107)
Q Consensus 35 ~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~-~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~--~~ 111 (1107)
.+.+.+++|+|+|++||+++ ++.|+||+.. ......+.+|..+|++++|+|+|.+|++++.|++|+|||+.+++ +.
T Consensus 18 ~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~ 96 (611)
T 1nr0_A 18 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK 96 (611)
T ss_dssp TTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE
T ss_pred cCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceee
Confidence 45678899999999999998 5799999995 45556778999999999999999999999999999999997543 23
Q ss_pred eee-ccCCCeEEEEEecCCCEEEEEcCC----CcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEccc
Q 001287 112 CCL-KWESNITAFSVISGSHFMYIGDEN----GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1107)
Q Consensus 112 ~~~-~~~~~Vt~l~~~~~~~~l~~g~~d----g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P 186 (1107)
..+ .|.+.|.+++|+|++++|++++.+ +.|++|+ . +.... .+.+|. ..|.+++|+|
T Consensus 97 ~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~--~~~~~---~l~gh~------------~~v~~v~f~p 157 (611)
T 1nr0_A 97 TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--T--GTSNG---NLTGQA------------RAMNSVDFKP 157 (611)
T ss_dssp EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--T--CCBCB---CCCCCS------------SCEEEEEECS
T ss_pred EeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--C--CCCcc---eecCCC------------CCceEEEECC
Confidence 333 688999999999999999988765 3555554 3 23322 255665 8899999999
Q ss_pred CCCCCEEEEEECCCeEEEEEccCCEEEE-EeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEE
Q 001287 187 NSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 265 (1107)
Q Consensus 187 ~~~~~~ll~~~~dg~V~vwdl~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l 265 (1107)
. ...+|++++.|++|++||..+++... +.+| ...|.+++|. |+|++|
T Consensus 158 ~-~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H------------------------------~~~V~~v~fs-pdg~~l 205 (611)
T 1nr0_A 158 S-RPFRIISGSDDNTVAIFEGPPFKFKSTFGEH------------------------------TKFVHSVRYN-PDGSLF 205 (611)
T ss_dssp S-SSCEEEEEETTSCEEEEETTTBEEEEEECCC------------------------------SSCEEEEEEC-TTSSEE
T ss_pred C-CCeEEEEEeCCCeEEEEECCCCeEeeeeccc------------------------------cCceEEEEEC-CCCCEE
Confidence 4 23369999999999999998887654 4455 7789999985 999999
Q ss_pred EEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEE
Q 001287 266 AVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTV 345 (1107)
Q Consensus 266 ~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltv 345 (1107)
++|+.||+|++||+.+++........ ......+..++..+ ++++++.+|++++.|. .
T Consensus 206 as~s~D~~i~lwd~~~g~~~~~~~~~--------~~~~~~h~~~V~~v--------~~spdg~~l~s~s~D~-------~ 262 (611)
T 1nr0_A 206 ASTGGDGTIVLYNGVDGTKTGVFEDD--------SLKNVAHSGSVFGL--------TWSPDGTKIASASADK-------T 262 (611)
T ss_dssp EEEETTSCEEEEETTTCCEEEECBCT--------TSSSCSSSSCEEEE--------EECTTSSEEEEEETTS-------E
T ss_pred EEEECCCcEEEEECCCCcEeeeeccc--------cccccccCCCEEEE--------EECCCCCEEEEEeCCC-------e
Confidence 99999999999998766322110000 00000123344444 3556889999999998 8
Q ss_pred EEcCccccccccceeeeeeecCC--CccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCC
Q 001287 346 LSLEWSSGMENLRCVSRVDITLT--GSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCP 423 (1107)
Q Consensus 346 l~l~~~~~~~~~~~~~~~~l~~~--~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~ 423 (1107)
+++|.....+.+ ..+..... .....+.+ . ...++....+|.+.+|+.......
T Consensus 263 v~lWd~~~~~~~---~~~~~~~~~~~~~~~~~~--~--------~~~l~s~s~d~~i~~~~~~~~~~~------------ 317 (611)
T 1nr0_A 263 IKIWNVATLKVE---KTIPVGTRIEDQQLGIIW--T--------KQALVSISANGFINFVNPELGSID------------ 317 (611)
T ss_dssp EEEEETTTTEEE---EEEECCSSGGGCEEEEEE--C--------SSCEEEEETTCCEEEEETTTTEEE------------
T ss_pred EEEEeCCCCcee---eeecCCCCccceeEEEEE--c--------CCEEEEEeCCCcEEEEeCCCCCcc------------
Confidence 888875432211 11211111 12222233 1 124666677778877763211000
Q ss_pred ccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEec
Q 001287 424 VEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYH 503 (1107)
Q Consensus 424 ~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~ 503 (1107)
....||...+..++++|++++|++|+.
T Consensus 318 -----------------------------------------------------~~~~gh~~~v~~l~~spdg~~l~s~s~ 344 (611)
T 1nr0_A 318 -----------------------------------------------------QVRYGHNKAITALSSSADGKTLFSADA 344 (611)
T ss_dssp -----------------------------------------------------EEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred -----------------------------------------------------eEEcCCCCCEEEEEEeCCCCEEEEEeC
Confidence 011244455566789999999999999
Q ss_pred CCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccc---------
Q 001287 504 DGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNF--------- 574 (1107)
Q Consensus 504 DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~--------- 574 (1107)
||+|++||+.++.+.. ....+|...|++++|++++ .|++++.|+.+++|+..........
T Consensus 345 D~~v~~Wd~~~~~~~~----------~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~ 413 (611)
T 1nr0_A 345 EGHINSWDISTGISNR----------VFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQ 413 (611)
T ss_dssp TSCEEEEETTTCCEEE----------CSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSC
T ss_pred CCcEEEEECCCCceee----------ecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCccccccceeeeecCCC
Confidence 9999999999887541 1125788999999999765 7888999999999998764321110
Q ss_pred ----eeeccC-------cCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeec
Q 001287 575 ----LFVLET-------KSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDD 643 (1107)
Q Consensus 575 ----~~~~~~-------~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~ 643 (1107)
.|.+.+ .+.+..+..+ . +..+ .|...|++++|+|||++||+|+.||+|+|||+.++.+... ..
T Consensus 414 ~~~~~~s~dg~~~~~~~~~~v~~~~~~---~-~~~~-~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~-~~ 487 (611)
T 1nr0_A 414 PLGLAVSADGDIAVAACYKHIAIYSHG---K-LTEV-PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEV-KT 487 (611)
T ss_dssp EEEEEECTTSSCEEEEESSEEEEEETT---E-EEEE-ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEE-EE
T ss_pred CcEEEEeCCCcEEEEEeCceEEEEeCC---c-eeee-ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeee-ec
Confidence 000000 0001111111 1 1222 3778899999999999999999999999999988764321 22
Q ss_pred CCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCC-cceecCCCCcccccceeeEEE
Q 001287 644 ISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS-ENMISSSPWHLKKKVIAISME 722 (1107)
Q Consensus 644 ~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~-g~~i~~~~~~~~~~~~~~~~~ 722 (1107)
.+|...|.+++|+ |++.+|++++.|++|++||..+ ++++..... .
T Consensus 488 -~~h~~~v~~v~fs----------------------pdg~~las~s~d~~v~~w~~~~~~~~~~~~~~--~--------- 533 (611)
T 1nr0_A 488 -IVHPAEITSVAFS----------------------NNGAFLVATDQSRKVIPYSVANNFELAHTNSW--T--------- 533 (611)
T ss_dssp -EECSSCEEEEEEC----------------------TTSSEEEEEETTSCEEEEEGGGTTEESCCCCC--C---------
T ss_pred -cCCCCceEEEEEC----------------------CCCCEEEEEcCCCCEEEEEcCCCCceeeeeee--e---------
Confidence 4699999999999 6789999999999999999887 554332100 0
Q ss_pred EecCCCCCCccccccccccccccCCCCCCCCCCcccCCCccccccccccccCCCCCCCcEEEEEecC-eeEEEecccccc
Q 001287 723 VIEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCED-SVRLYSRKSVIQ 801 (1107)
Q Consensus 723 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~c~e~-~l~v~sl~~~~~ 801 (1107)
.|...+..+.|.+. ..++++++.| .||||++...
T Consensus 534 -----------------------------------------~H~~~V~~v~fspd--g~~lasgs~D~~v~lW~~~~~-- 568 (611)
T 1nr0_A 534 -----------------------------------------FHTAKVACVSWSPD--NVRLATGSLDNSVIVWNMNKP-- 568 (611)
T ss_dssp -----------------------------------------CCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTCT--
T ss_pred -----------------------------------------ecccceeEEEECCC--CCEEEEEECCCcEEEEECCCc--
Confidence 03333444555554 7789999977 9999998762
Q ss_pred ccceeeeeecCC-CcceeeeeeecCCceeEEEEEeecCcEEEeecC
Q 001287 802 GNNKTVQKVKHK-NRCCWASTIEKDEKVCGLLLLFQTGAVQIRSLP 846 (1107)
Q Consensus 802 g~~~~i~k~~~~-~~~~~~~~~~~~~~~~~l~~~~~~G~i~i~slp 846 (1107)
....+....-. ...+++..|..+ +. |++...||+|++|++|
T Consensus 569 -~~~~~~~~~~h~~~~v~~v~fs~d--~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 569 -SDHPIIIKGAHAMSSVNSVIWLNE--TT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp -TSCCEEETTSSTTSCEEEEEEEET--TE-EEEEETTSCEEEEECC
T ss_pred -ccccchhhccCcccCeeEEEEcCC--CE-EEEecCCCCEEEEecc
Confidence 11111222212 344556666664 44 9999999999999986
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.1e-44 Score=442.89 Aligned_cols=494 Identities=12% Similarity=0.122 Sum_probs=337.4
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCc---ceeeeCCCCCCEEEEEEEeCCCEEEEEeCCC----cEEEE
Q 001287 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI---EGLLISPSQLPYKNLEFLQNQGFLISITNDN----EIQVW 103 (1107)
Q Consensus 31 ~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~---~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~----~I~vW 103 (1107)
..||...|++++|+|++++||+|+.||.|+|||.... ....+..|.++|.+++|+|++.+|++++.+. .|++|
T Consensus 55 ~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~w 134 (611)
T 1nr0_A 55 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLF 134 (611)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEET
T ss_pred ecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEe
Confidence 3589999999999999999999999999999998532 2335678999999999999999999998753 56666
Q ss_pred EcCCCeeeeee-ccCCCeEEEEEecCCC-EEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEE
Q 001287 104 SLESRSLACCL-KWESNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVG 181 (1107)
Q Consensus 104 Dl~s~~~~~~~-~~~~~Vt~l~~~~~~~-~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~ 181 (1107)
| ++.....+ .|...|++++|+|+++ +|++|+.|++|++|+... +++. ..+.+|. ..|.+
T Consensus 135 d--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~--~~~~---~~l~~H~------------~~V~~ 195 (611)
T 1nr0_A 135 D--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP--FKFK---STFGEHT------------KFVHS 195 (611)
T ss_dssp T--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT--BEEE---EEECCCS------------SCEEE
T ss_pred e--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC--CeEe---eeecccc------------CceEE
Confidence 6 45444444 6889999999999987 699999999999998643 4444 3366776 88999
Q ss_pred EEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCC
Q 001287 182 VLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS 261 (1107)
Q Consensus 182 v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spd 261 (1107)
++|+| ++.+|++++.|++|++||+.+++....+... .+. ...+...|.+++|. |+
T Consensus 196 v~fsp--dg~~las~s~D~~i~lwd~~~g~~~~~~~~~--~~~--------------------~~~h~~~V~~v~~s-pd 250 (611)
T 1nr0_A 196 VRYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDD--SLK--------------------NVAHSGSVFGLTWS-PD 250 (611)
T ss_dssp EEECT--TSSEEEEEETTSCEEEEETTTCCEEEECBCT--TSS--------------------SCSSSSCEEEEEEC-TT
T ss_pred EEECC--CCCEEEEEECCCcEEEEECCCCcEeeeeccc--ccc--------------------ccccCCCEEEEEEC-CC
Confidence 99998 6889999999999999999988766544100 000 00127789999985 99
Q ss_pred CCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcc
Q 001287 262 GSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEE 341 (1107)
Q Consensus 262 g~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~ 341 (1107)
|++|++++.||+|++||+.+++... .+.... ........+.| ++..+++++.+.
T Consensus 251 g~~l~s~s~D~~v~lWd~~~~~~~~-----------~~~~~~-~~~~~~~~~~~----------~~~~l~s~s~d~---- 304 (611)
T 1nr0_A 251 GTKIASASADKTIKIWNVATLKVEK-----------TIPVGT-RIEDQQLGIIW----------TKQALVSISANG---- 304 (611)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEE-----------EEECCS-SGGGCEEEEEE----------CSSCEEEEETTC----
T ss_pred CCEEEEEeCCCeEEEEeCCCCceee-----------eecCCC-CccceeEEEEE----------cCCEEEEEeCCC----
Confidence 9999999999999999998653211 111110 01111222222 345677777765
Q ss_pred eEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCC
Q 001287 342 VLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSV 421 (1107)
Q Consensus 342 ~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~ 421 (1107)
.+.+|........ .........+.++.+.|++. .++..+.+|.+.+||...........
T Consensus 305 ---~i~~~~~~~~~~~----~~~~gh~~~v~~l~~spdg~--------~l~s~s~D~~v~~Wd~~~~~~~~~~~------ 363 (611)
T 1nr0_A 305 ---FINFVNPELGSID----QVRYGHNKAITALSSSADGK--------TLFSADAEGHINSWDISTGISNRVFP------ 363 (611)
T ss_dssp ---CEEEEETTTTEEE----EEECCCSSCEEEEEECTTSS--------EEEEEETTSCEEEEETTTCCEEECSS------
T ss_pred ---cEEEEeCCCCCcc----eEEcCCCCCEEEEEEeCCCC--------EEEEEeCCCcEEEEECCCCceeeecc------
Confidence 5566654321111 12224456889999998743 57777889999999965432211110
Q ss_pred CCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCC-----------CCCCCccc
Q 001287 422 CPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGV-----------PSPVPITK 490 (1107)
Q Consensus 422 ~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~-----------~~~~~~~~ 490 (1107)
..|...+.+..+.. ......-.+. ..-..|...++. ......++
T Consensus 364 ---------~~h~~~v~~~~~s~--~~~l~s~s~d--------------~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (611)
T 1nr0_A 364 ---------DVHATMITGIKTTS--KGDLFTVSWD--------------DHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 418 (611)
T ss_dssp ---------CSCSSCEEEEEECT--TSCEEEEETT--------------TEEEEECSSSSSSCTTSCCEEECSSCEEEEE
T ss_pred ---------cCCcceEEEEEECC--CCcEEEEEcC--------------CceEEeecCCccccccceeeeecCCCCcEEE
Confidence 11233344333321 0000000000 001112221111 00112234
Q ss_pred cCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCC
Q 001287 491 CHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLD 570 (1107)
Q Consensus 491 ~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~ 570 (1107)
+++++++++++ .++.|++|+. +.+. .+ .|...|++++|+||+++|++|+.||.|+||++.....
T Consensus 419 ~s~dg~~~~~~-~~~~v~~~~~--~~~~------------~~-~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~ 482 (611)
T 1nr0_A 419 VSADGDIAVAA-CYKHIAIYSH--GKLT------------EV-PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV 482 (611)
T ss_dssp ECTTSSCEEEE-ESSEEEEEET--TEEE------------EE-ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE
T ss_pred EeCCCcEEEEE-eCceEEEEeC--Ccee------------ee-ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCce
Confidence 55555555544 3455666652 1111 12 2667899999999999999999999999999976410
Q ss_pred CccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC-CeEEEEeecCCCCCC
Q 001287 571 AKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNL-LSVLFFTDDISGSSS 649 (1107)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~-~~~~~~~~~~~~h~~ 649 (1107)
..... ..|...|++|+|+|+|++||+|+.|++|++||+.+ +.++ ....+.+|..
T Consensus 483 -----------------------~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~-~~~~~~~H~~ 537 (611)
T 1nr0_A 483 -----------------------SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA-HTNSWTFHTA 537 (611)
T ss_dssp -----------------------EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES-CCCCCCCCSS
T ss_pred -----------------------eeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCcee-eeeeeeeccc
Confidence 11233 67999999999999999999999999999999987 5544 1112345999
Q ss_pred ceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcc
Q 001287 650 PIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSEN 703 (1107)
Q Consensus 650 ~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~ 703 (1107)
.|.+++|+ |++.+|++|+.|++|++||.+++.
T Consensus 538 ~V~~v~fs----------------------pdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 538 KVACVSWS----------------------PDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp CEEEEEEC----------------------TTSSEEEEEETTSCEEEEETTCTT
T ss_pred ceeEEEEC----------------------CCCCEEEEEECCCcEEEEECCCcc
Confidence 99999999 678899999999999999998754
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.4e-43 Score=475.42 Aligned_cols=620 Identities=10% Similarity=0.069 Sum_probs=431.3
Q ss_pred eeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcc-eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCC
Q 001287 29 AVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1107)
Q Consensus 29 ~~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s 107 (1107)
....||.+.|++++|+|++++||+|+.||.|+||+....+ .....+|..+|.+++|+|++.+|++++.|+.|+|||+.+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence 3456899999999999999999999999999999996554 456778999999999999999999999999999999999
Q ss_pred Ceeeeee-ccCCCeEEEEEec--CCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEc
Q 001287 108 RSLACCL-KWESNITAFSVIS--GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1107)
Q Consensus 108 ~~~~~~~-~~~~~Vt~l~~~~--~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f 184 (1107)
++.+..+ .|...|++++|++ +..++++|+.||.|++|+++. +... ..+.+|. ..|.+++|
T Consensus 689 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~--~~~~---~~~~~h~------------~~v~~~~~ 751 (1249)
T 3sfz_A 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ--KECR---NTMFGHT------------NSVNHCRF 751 (1249)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS--SSEE---EEECCCS------------SCEEEEEE
T ss_pred CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC--cchh---heecCCC------------CCEEEEEE
Confidence 9888777 6888999999999 456899999999999999875 4444 2366666 88999999
Q ss_pred ccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCE
Q 001287 185 HPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1107)
Q Consensus 185 ~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~ 264 (1107)
+| ++.++++++.||.|++||+.+++.............. .. ........|.+++|. |+|..
T Consensus 752 sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~------~~----------~~~~~~~~v~~~~~s-~dg~~ 812 (1249)
T 3sfz_A 752 SP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSS------ED----------PPEDVEVIVKCCSWS-ADGDK 812 (1249)
T ss_dssp CS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC------------------------CCCCCBCCCCBC-TTSSE
T ss_pred ec--CCCEEEEEECCCeEEEEeCCCCcccceeccccccccc------CC----------ccccccceEEEEEEC-CCCCE
Confidence 98 6888999999999999999998765543221111100 00 000114478889985 99999
Q ss_pred EEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEE
Q 001287 265 LAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLT 344 (1107)
Q Consensus 265 l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~lt 344 (1107)
+++++ +|.+.+||..++.... .+... ...++.. +++++++.++++++.++
T Consensus 813 l~~~~-~~~v~~~d~~~~~~~~-----------~~~~~---~~~~v~~--------~~~sp~~~~l~~~~~dg------- 862 (1249)
T 3sfz_A 813 IIVAA-KNKVLLFDIHTSGLLA-----------EIHTG---HHSTIQY--------CDFSPYDHLAVIALSQY------- 862 (1249)
T ss_dssp EEEEE-TTEEEEEETTTCCEEE-----------EEECS---SSSCCCE--------EEECSSTTEEEEECSSS-------
T ss_pred EEEEc-CCcEEEEEecCCCcee-----------EEcCC---CCCceEE--------EEEcCCCCEEEEEeCCC-------
Confidence 99887 6899999998763221 11111 1122222 23566788999998887
Q ss_pred EEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCc
Q 001287 345 VLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPV 424 (1107)
Q Consensus 345 vl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~ 424 (1107)
.+.+|.......+ .........+..+.+.|++. .++..+.+|.+.+|+.......... ..
T Consensus 863 ~v~vwd~~~~~~~----~~~~~h~~~v~~v~~spdg~--------~l~s~s~dg~v~vw~~~~~~~~~~~--------~~ 922 (1249)
T 3sfz_A 863 CVELWNIDSRLKV----ADCRGHLSWVHGVMFSPDGS--------SFLTASDDQTIRVWETKKVCKNSAI--------VL 922 (1249)
T ss_dssp CEEEEETTTTEEE----EEECCCSSCEEEEEECTTSS--------EEEEEETTSCEEEEEHHHHHSCCSS--------SE
T ss_pred eEEEEEcCCCcee----eecCCCccceEEEEECCCCC--------EEEEEeCCCeEEEEEccccceeeee--------cc
Confidence 6666655432221 11123445788999988743 5777788999999985432110000 00
Q ss_pred cCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecC
Q 001287 425 EFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHD 504 (1107)
Q Consensus 425 ~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~D 504 (1107)
.......+............ ... ...+ ....+ .........+.+++++|+++++++|+.|
T Consensus 923 ~~~~~~~~~~~~~~~~~~~~-~~~---~~~~------~~~~~----------~~~~~~~~~i~~~~~sp~g~~l~~g~~~ 982 (1249)
T 3sfz_A 923 KQEIDVVFQENETMVLAVDN-IRG---LQLI------AGKTG----------QIDYLPEAQVSCCCLSPHLEYVAFGDED 982 (1249)
T ss_dssp EEEEEEEEETTEEEEEEEES-SSS---EEEE------EESSC----------CEEEECCSCEEEEEECTTSSEEEEEETT
T ss_pred cceeeEEEcCCCcEEEEecC-Ccc---eEEE------ecCcc----------eEEEcccCcEEEEEEcCCCCEEEEEcCC
Confidence 00000000011000000000 000 0000 00000 0000112334566899999999999999
Q ss_pred CcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcc
Q 001287 505 GSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEV 584 (1107)
Q Consensus 505 gtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~ 584 (1107)
|.|++||+..+... ..+.+|...|++++|+|++++|++++.||.|++|++....
T Consensus 983 g~i~i~d~~~~~~~-----------~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~--------------- 1036 (1249)
T 3sfz_A 983 GAIKIIELPNNRVF-----------SSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD--------------- 1036 (1249)
T ss_dssp SCCEEEETTTTSCE-----------EECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTE---------------
T ss_pred CCEEEEEcCCCcee-----------eecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc---------------
Confidence 99999999988755 3467899999999999999999999999999999998751
Q ss_pred eecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCcc
Q 001287 585 HALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHS 664 (1107)
Q Consensus 585 ~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~ 664 (1107)
...+..|...|++++|+|++ .+++|+.||.|++||+.++..+. .+.+|...|.+++|+
T Consensus 1037 -----------~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~---~~~~~~~~v~~~~~s------- 1094 (1249)
T 3sfz_A 1037 -----------YVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIER---DFTCHQGTVLSCAIS------- 1094 (1249)
T ss_dssp -----------EECCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCE---EEECCSSCCCCEEEC-------
T ss_pred -----------eEEEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCceeE---EEcccCCcEEEEEEC-------
Confidence 22345799999999999977 57889999999999999988773 456799999999999
Q ss_pred ccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcceecCCCCcccccceeeEEEEecCCCCCCccccccccccccc
Q 001287 665 LAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVIEPVCGFPIEKQAEQSAEENA 744 (1107)
Q Consensus 665 ~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~i~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 744 (1107)
|++.+|++++.|++|++||..+++.+.....
T Consensus 1095 ---------------~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~---------------------------------- 1125 (1249)
T 3sfz_A 1095 ---------------SDATKFSSTSADKTAKIWSFDLLSPLHELKG---------------------------------- 1125 (1249)
T ss_dssp ---------------SSSSSCEEECCSSCCCEECSSSSSCSBCCCC----------------------------------
T ss_pred ---------------CCCCEEEEEcCCCcEEEEECCCcceeeeecc----------------------------------
Confidence 5577899999999999999998876644311
Q ss_pred cCCCCCCCCCCcccCCCccccccccccccCCCCCCCcEEEEEecC-eeEEEeccccccccceeeeee---------cCCC
Q 001287 745 AKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCED-SVRLYSRKSVIQGNNKTVQKV---------KHKN 814 (1107)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~c~e~-~l~v~sl~~~~~g~~~~i~k~---------~~~~ 814 (1107)
|...+..+.+.+. ..+++++++| .|+||++.+- ..++.. .-..
T Consensus 1126 --------------------h~~~v~~~~~s~d--g~~lat~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~~~~~~~ 1178 (1249)
T 3sfz_A 1126 --------------------HNGCVRCSAFSLD--GILLATGDDNGEIRIWNVSDG-----QLLHSCAPISVEEGTATHG 1178 (1249)
T ss_dssp --------------------CSSCEEEEEECSS--SSEEEEEETTSCCCEEESSSS-----CCCCCCCCCC-------CC
T ss_pred --------------------CCCcEEEEEECCC--CCEEEEEeCCCEEEEEECCCC-----ceEEEeccccccccccccC
Confidence 1111222233333 6688888877 8999998762 222111 1012
Q ss_pred cceeeeeeecCCceeEEEEEeecCcEEEeecCCccccccccccceeeceecCccccccccc-CCcEEEEcC-ceeEEE
Q 001287 815 RCCWASTIEKDEKVCGLLLLFQTGAVQIRSLPDLELVMESSLMSILRWNFKANMDKTISAD-NGQITLANG-SEVAFV 890 (1107)
Q Consensus 815 ~~~~~~~~~~~~~~~~l~~~~~~G~i~i~slp~l~~~~~~~~~~~~~~~~~~~~~~~~~~s-~Gq~~l~~~-~e~~~~ 890 (1107)
..+.+..|.. ++..|++. +|.|++|++.+-+.+... ..+...+.+++|| ||+++++++ ++...+
T Consensus 1179 ~~v~~l~fs~--dg~~l~s~--~g~v~vwd~~~g~~~~~~--------~~~~~~i~~~~~s~dg~~l~~~~~dg~v~v 1244 (1249)
T 3sfz_A 1179 GWVTDVCFSP--DSKTLVSA--GGYLKWWNVATGDSSQTF--------YTNGTNLKKIHVSPDFRTYVTVDNLGILYI 1244 (1249)
T ss_dssp SCCCEEEECT--TSSCEEEE--SSSEEEBCSSSCBCCCCC--------CCSSCCCCCCEECSSSCCEEEECTTCCEEE
T ss_pred ceEEEEEECC--CCCEEEEC--CCeEEEEECCCCceeeee--------eccCCcccEEEECCCCCEEEEecCCcEEEE
Confidence 2233334444 46667655 599999999987765543 3345668889999 999877777 665554
No 7
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.1e-40 Score=409.73 Aligned_cols=556 Identities=13% Similarity=0.098 Sum_probs=380.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCc-----ceeeeCCCCCC-EEEEEEEe--CCCEEEEEeCCCcEEEEE
Q 001287 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-----EGLLISPSQLP-YKNLEFLQ--NQGFLISITNDNEIQVWS 104 (1107)
Q Consensus 33 G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~-----~~~~~~~h~~~-V~~l~fs~--d~~~L~S~s~d~~I~vWD 104 (1107)
++.+.|++++|+|++++||+|+ ++.|+||+.... ....+.+|..+ |++++|+| ++.+|++++.|+.|+|||
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~ 94 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG 94 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence 5678899999999999999999 899999999654 56678889999 99999999 999999999999999999
Q ss_pred cCCC--------eeeeee-ccCCCeEEEEEecCCCEEEEEcCC----CcEEEEEeecCCCceeecceeecccccccccCC
Q 001287 105 LESR--------SLACCL-KWESNITAFSVISGSHFMYIGDEN----GLMSVIKYDADEGKLFQLPYNISADALSEKAGF 171 (1107)
Q Consensus 105 l~s~--------~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~d----g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~ 171 (1107)
+.++ ..+..+ .+...|++++|+|++++|++++.+ +.|++|+ . ++.. ..+.+|.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~--~~~~---~~~~~~~------- 160 (615)
T 1pgu_A 95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--S--GNSL---GEVSGHS------- 160 (615)
T ss_dssp EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--T--CCEE---EECCSCS-------
T ss_pred CCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--C--CCcc---eeeecCC-------
Confidence 9754 455554 578899999999999999999887 6666665 2 3333 2355655
Q ss_pred CCCCCCCeEEEEcccCCCCC-EEEEEECCCeEEEEEccCCEEEEEe-CCccccccccccCCCCCCCCccccCCCCCCCCC
Q 001287 172 PLLSHQPVVGVLPHPNSSGN-RVLIAYENALVILWDVSEAQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEE 249 (1107)
Q Consensus 172 ~~~~~~~V~~v~f~P~~~~~-~ll~~~~dg~V~vwdl~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1107)
..|.+++|+|. +. ++++++.||.|++||+.+++..... +| .
T Consensus 161 -----~~v~~~~~~~~--~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~------------------------------~ 203 (615)
T 1pgu_A 161 -----QRINACHLKQS--RPMRSMTVGDDGSVVFYQGPPFKFSASDRTH------------------------------H 203 (615)
T ss_dssp -----SCEEEEEECSS--SSCEEEEEETTTEEEEEETTTBEEEEEECSS------------------------------S
T ss_pred -----ccEEEEEECCC--CCcEEEEEeCCCcEEEEeCCCcceeeeeccc------------------------------C
Confidence 78999999984 54 7999999999999999998876543 34 4
Q ss_pred C---ceeEEEeecCC-CCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCC
Q 001287 250 K---EISALCWASSS-GSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNI 325 (1107)
Q Consensus 250 ~---~Vtsl~w~spd-g~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~ 325 (1107)
. .|++++|. |+ +++|++++.||.|++||+.+++.. ..+.........++..+. ..
T Consensus 204 ~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~vwd~~~~~~~-----------~~~~~~~~~~~~~v~~~~--------~~- 262 (615)
T 1pgu_A 204 KQGSFVRDVEFS-PDSGEFVITVGSDRKISCFDGKSGEFL-----------KYIEDDQEPVQGGIFALS--------WL- 262 (615)
T ss_dssp CTTCCEEEEEEC-STTCCEEEEEETTCCEEEEETTTCCEE-----------EECCBTTBCCCSCEEEEE--------ES-
T ss_pred CCCceEEEEEEC-CCCCCEEEEEeCCCeEEEEECCCCCEe-----------EEecccccccCCceEEEE--------Ec-
Confidence 4 89999986 99 999999999999999999766321 111000001333455443 33
Q ss_pred CceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeec---CCCccceEEEccCCCCCCCCCcceEEEEccCCeEEE
Q 001287 326 DGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDIT---LTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHF 402 (1107)
Q Consensus 326 d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~---~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~ 402 (1107)
++.++++++.+. .+.+|.....+.+ ..+... ....+..+.+. + ...+++.+.+|.+.+
T Consensus 263 ~~~~l~~~~~d~-------~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~--------~~~l~~~~~~g~i~~ 323 (615)
T 1pgu_A 263 DSQKFATVGADA-------TIRVWDVTTSKCV---QKWTLDKQQLGNQQVGVVAT-G--------NGRIISLSLDGTLNF 323 (615)
T ss_dssp SSSEEEEEETTS-------EEEEEETTTTEEE---EEEECCTTCGGGCEEEEEEE-E--------TTEEEEEETTSCEEE
T ss_pred CCCEEEEEcCCC-------cEEEEECCCCcEE---EEEcCCCCcccCceeEEEeC-C--------CCeEEEEECCCCEEE
Confidence 677888888886 6777755422221 112222 11344444443 2 225777788999999
Q ss_pred EeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCC
Q 001287 403 YDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGV 482 (1107)
Q Consensus 403 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~ 482 (1107)
|+.......... .++
T Consensus 324 ~d~~~~~~~~~~-----------------------------------------------------------------~~~ 338 (615)
T 1pgu_A 324 YELGHDEVLKTI-----------------------------------------------------------------SGH 338 (615)
T ss_dssp EETTEEEEEEEE-----------------------------------------------------------------CCC
T ss_pred EECCCCcEEEEE-----------------------------------------------------------------eCC
Confidence 985442211111 112
Q ss_pred CCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEE
Q 001287 483 PSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYI 562 (1107)
Q Consensus 483 ~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~v 562 (1107)
...+..+++ |+ +++|+.||.|++||+. . +. .+|...|++++| +++..|++++.||.|++
T Consensus 339 ~~~v~~~~~-~~---l~~~~~dg~i~~w~~~----~-----------~~-~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~ 397 (615)
T 1pgu_A 339 NKGITALTV-NP---LISGSYDGRIMEWSSS----S-----------MH-QDHSNLIVSLDN-SKAQEYSSISWDDTLKV 397 (615)
T ss_dssp SSCEEEEET-TT---TEEEETTSCEEETTTT----E-----------EE-CCCCSCEEEEEC-CSTTCCEEEETTTEEEE
T ss_pred CCCEEEEEe-cC---cEEECCCCeEEEEEch----h-----------hc-CcccCceEEEEE-CCCcEEEEEeCCCCEEE
Confidence 223334456 55 8888888888888877 1 22 567778888888 66778888888888888
Q ss_pred EEecCCCCCccc---eeecc-------CcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeC-CCeEEEEE
Q 001287 563 YNLNGSLDAKNF---LFVLE-------TKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFE-CGRVAVLD 631 (1107)
Q Consensus 563 w~~~~~~~~~~~---~~~~~-------~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~-dg~V~iwd 631 (1107)
|++......... .+.+. ..+.+..+....+ +++..+ .|...+++++|+ +++|++|+. ||.|++||
T Consensus 398 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~ 473 (615)
T 1pgu_A 398 NGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTG-DIIKSV-RLNSPGSAVSLS--QNYVAVGLEEGNTIQVFK 473 (615)
T ss_dssp TTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTC-CEEEEE-ECSSCEEEEEEC--SSEEEEEETTTSCEEEEE
T ss_pred EEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCC-ceeeec-ccCCCceEEEEc--CCEEEEeecCCCeEEEEE
Confidence 887653211000 00000 1111111111111 123333 488999999999 889999999 99999999
Q ss_pred cCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcceecCCCCc
Q 001287 632 MNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWH 711 (1107)
Q Consensus 632 ~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~i~~~~~~ 711 (1107)
+.++.... ..+.+|..+|.+++|+ |++.+|++++.||.|++||..+++.+.....
T Consensus 474 ~~~~~~~~--~~~~~~~~~v~~~~~s----------------------~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~- 528 (615)
T 1pgu_A 474 LSDLEVSF--DLKTPLRAKPSYISIS----------------------PSETYIAAGDVMGKILLYDLQSREVKTSRWA- 528 (615)
T ss_dssp TTEEEEEE--ECSSCCSSCEEEEEEC----------------------TTSSEEEEEETTSCEEEEETTTTEEEECCSC-
T ss_pred CCCccccc--cccCCccCceEEEEEC----------------------CCCCEEEEcCCCCeEEEeeCCCCcceeEeec-
Confidence 99887653 4677899999999999 6688999999999999999999888765411
Q ss_pred ccccceeeEEEEecCCCCCCccccccccccccccCCCCCCCCCCcccCCCccccccccccccCCCCCCCcEEEEEecC-e
Q 001287 712 LKKKVIAISMEVIEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCED-S 790 (1107)
Q Consensus 712 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~c~e~-~ 790 (1107)
.+...+.++..-. ... ..........+++++++| .
T Consensus 529 -~h~~~v~~~~~sp-~~~------------------------------------------~~~~~~~~~~~l~~~~~dg~ 564 (615)
T 1pgu_A 529 -FRTSKINAISWKP-AEK------------------------------------------GANEEEIEEDLVATGSLDTN 564 (615)
T ss_dssp -CCSSCEEEEEECC-CC------------------------------------------------CCSCCEEEEEETTSC
T ss_pred -CCCCceeEEEEcC-ccc------------------------------------------cccccccCCCEEEEEcCCCc
Confidence 0112222222210 000 000000016688888877 9
Q ss_pred eEEEeccccccccceeeeeecCCCcceeeeeeecCCceeEEEEEeecCcEEEeecC
Q 001287 791 VRLYSRKSVIQGNNKTVQKVKHKNRCCWASTIEKDEKVCGLLLLFQTGAVQIRSLP 846 (1107)
Q Consensus 791 l~v~sl~~~~~g~~~~i~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~i~i~slp 846 (1107)
|+||++... ...++...-......+..|..+ +. |++...||.|+||++.
T Consensus 565 i~iw~~~~~----~~~~~~~~~h~~~v~~l~~s~~--~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 565 IFIYSVKRP----MKIIKALNAHKDGVNNLLWETP--ST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp EEEEESSCT----TCCEEETTSSTTCEEEEEEEET--TE-EEEEETTSCEEEEEEC
T ss_pred EEEEECCCC----ceechhhhcCccceEEEEEcCC--CC-eEEecCCceEEEEeee
Confidence 999999872 2444443323344455555554 55 9999999999999875
No 8
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.3e-41 Score=450.41 Aligned_cols=558 Identities=11% Similarity=0.106 Sum_probs=396.6
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcc-eeeeCCCCCCEEEEEEEe--CCCEEEEEeCCCcEEEEEcCC
Q 001287 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQ--NQGFLISITNDNEIQVWSLES 107 (1107)
Q Consensus 31 ~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~-~~~~~~h~~~V~~l~fs~--d~~~L~S~s~d~~I~vWDl~s 107 (1107)
..||...|.+++|+|++++||+|+.||.|+||+....+ .....+|..+|.+++|++ ++.++++++.|+.|++||+.+
T Consensus 653 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~ 732 (1249)
T 3sfz_A 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ 732 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS
T ss_pred eccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC
Confidence 35899999999999999999999999999999996554 446678999999999999 556899999999999999999
Q ss_pred Ceeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEccc
Q 001287 108 RSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1107)
Q Consensus 108 ~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P 186 (1107)
++.+..+ .|.+.|++++|+|+++++++|+.||.|++|++... ..... +...... ......+......|.+++|+|
T Consensus 733 ~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~--~~~~~-~~~~~~~-~~~~~~~~~~~~~v~~~~~s~ 808 (1249)
T 3sfz_A 733 KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA--NERKS-INVKRFF-LSSEDPPEDVEVIVKCCSWSA 808 (1249)
T ss_dssp SSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGT--EEEEE-EECCCCC---------CCCCCBCCCCBCT
T ss_pred cchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCC--cccce-ecccccc-cccCCccccccceEEEEEECC
Confidence 9887766 68899999999999999999999999999998752 22211 1111100 000001111234789999988
Q ss_pred CCCCCEEEEEECCCeEEEEEccCCEEEEEe--CCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCE
Q 001287 187 NSSGNRVLIAYENALVILWDVSEAQIIFVG--GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1107)
Q Consensus 187 ~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~ 264 (1107)
++..+++++ ++.+.+||+.++...... +| ...|++++|. |++.+
T Consensus 809 --dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~------------------------------~~~v~~~~~s-p~~~~ 854 (1249)
T 3sfz_A 809 --DGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGH------------------------------HSTIQYCDFS-PYDHL 854 (1249)
T ss_dssp --TSSEEEEEE-TTEEEEEETTTCCEEEEEECSS------------------------------SSCCCEEEEC-SSTTE
T ss_pred --CCCEEEEEc-CCcEEEEEecCCCceeEEcCCC------------------------------CCceEEEEEc-CCCCE
Confidence 688666665 789999999998765433 34 6789999985 99999
Q ss_pred EEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEE
Q 001287 265 LAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLT 344 (1107)
Q Consensus 265 l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~lt 344 (1107)
+++++.||.|++||+.++.. +..+. .+..++..+ .+++++..+++++.++
T Consensus 855 l~~~~~dg~v~vwd~~~~~~-----------~~~~~----~h~~~v~~v--------~~spdg~~l~s~s~dg------- 904 (1249)
T 3sfz_A 855 AVIALSQYCVELWNIDSRLK-----------VADCR----GHLSWVHGV--------MFSPDGSSFLTASDDQ------- 904 (1249)
T ss_dssp EEEECSSSCEEEEETTTTEE-----------EEEEC----CCSSCEEEE--------EECTTSSEEEEEETTS-------
T ss_pred EEEEeCCCeEEEEEcCCCce-----------eeecC----CCccceEEE--------EECCCCCEEEEEeCCC-------
Confidence 99999999999999986521 11111 122344444 2456788889988887
Q ss_pred EEEcCccccccc---ccee------------------------------eeeeecCCCccceEEEccCCCCCCCCCcceE
Q 001287 345 VLSLEWSSGMEN---LRCV------------------------------SRVDITLTGSFADMILLSSAGATVGNHKADL 391 (1107)
Q Consensus 345 vl~l~~~~~~~~---~~~~------------------------------~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l 391 (1107)
.+.+|....... .... ..........+..+.+.|+. ..+
T Consensus 905 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g--------~~l 976 (1249)
T 3sfz_A 905 TIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHL--------EYV 976 (1249)
T ss_dssp CEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTS--------SEE
T ss_pred eEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCC--------CEE
Confidence 666664331100 0000 00111112234444444442 245
Q ss_pred EEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCcc
Q 001287 392 FVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQA 471 (1107)
Q Consensus 392 ~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1107)
++.+.+|.+.+|+.......
T Consensus 977 ~~g~~~g~i~i~d~~~~~~~------------------------------------------------------------ 996 (1249)
T 3sfz_A 977 AFGDEDGAIKIIELPNNRVF------------------------------------------------------------ 996 (1249)
T ss_dssp EEEETTSCCEEEETTTTSCE------------------------------------------------------------
T ss_pred EEEcCCCCEEEEEcCCCcee------------------------------------------------------------
Confidence 55566666666653211000
Q ss_pred CCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeE
Q 001287 472 GHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSL 551 (1107)
Q Consensus 472 ~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~L 551 (1107)
....+|...+..++++++++++++|+.||+|++||+.++.+. .+..|...|++++|++++ .+
T Consensus 997 -----~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~------------~~~~~~~~v~~~~~~~~~-~l 1058 (1249)
T 3sfz_A 997 -----SSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV------------FLQAHQETVKDFRLLQDS-RL 1058 (1249)
T ss_dssp -----EECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE------------CCBCCSSCEEEEEECSSS-EE
T ss_pred -----eecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE------------EEecCCCcEEEEEEcCCC-cE
Confidence 011234445566789999999999999999999999988744 255888999999999965 56
Q ss_pred EEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001287 552 AVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD 631 (1107)
Q Consensus 552 asg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd 631 (1107)
++++.||.|++|++.... +...+..|.+.|++++|+|+++++++|+.||+|++||
T Consensus 1059 ~~~~~dg~v~vwd~~~~~-------------------------~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd 1113 (1249)
T 3sfz_A 1059 LSWSFDGTVKVWNVITGR-------------------------IERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWS 1113 (1249)
T ss_dssp EEEESSSEEEEEETTTTC-------------------------CCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEEC
T ss_pred EEEECCCcEEEEECCCCc-------------------------eeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 789999999999997752 4566788999999999999999999999999999999
Q ss_pred cCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcceecCCCCc
Q 001287 632 MNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWH 711 (1107)
Q Consensus 632 ~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~i~~~~~~ 711 (1107)
+.++..+ ..+.+|..+|.+++|+ |++.+|++++.||.|++||..+|+.+....
T Consensus 1114 ~~~~~~~---~~l~~h~~~v~~~~~s----------------------~dg~~lat~~~dg~i~vwd~~~~~~~~~~~-- 1166 (1249)
T 3sfz_A 1114 FDLLSPL---HELKGHNGCVRCSAFS----------------------LDGILLATGDDNGEIRIWNVSDGQLLHSCA-- 1166 (1249)
T ss_dssp SSSSSCS---BCCCCCSSCEEEEEEC----------------------SSSSEEEEEETTSCCCEEESSSSCCCCCCC--
T ss_pred CCCccee---eeeccCCCcEEEEEEC----------------------CCCCEEEEEeCCCEEEEEECCCCceEEEec--
Confidence 9988876 5677899999999999 568899999999999999999988775431
Q ss_pred ccccceeeEEEEecCCCCCCccccccccccccccCCCCCCCCCCcccCCCccccccccccccCCCCCCCcEEEEEecCee
Q 001287 712 LKKKVIAISMEVIEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCEDSV 791 (1107)
Q Consensus 712 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~c~e~~l 791 (1107)
+.... . ....|...+..+.|.+. ..++++++ ..|
T Consensus 1167 ~~~~~--------~-----------------------------------~~~~~~~~v~~l~fs~d--g~~l~s~~-g~v 1200 (1249)
T 3sfz_A 1167 PISVE--------E-----------------------------------GTATHGGWVTDVCFSPD--SKTLVSAG-GYL 1200 (1249)
T ss_dssp CCC--------------------------------------------------CCSCCCEEEECTT--SSCEEEES-SSE
T ss_pred ccccc--------c-----------------------------------cccccCceEEEEEECCC--CCEEEECC-CeE
Confidence 00000 0 00013333444556554 55666664 899
Q ss_pred EEEeccccccccceeeeeecCCCcceeeeeeecCCceeEEEEEeecCcEEEeecCC
Q 001287 792 RLYSRKSVIQGNNKTVQKVKHKNRCCWASTIEKDEKVCGLLLLFQTGAVQIRSLPD 847 (1107)
Q Consensus 792 ~v~sl~~~~~g~~~~i~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~i~i~slp~ 847 (1107)
++|++.+ ...++.......-.++..|.. ++..|+++..+|.|.+|.+++
T Consensus 1201 ~vwd~~~-----g~~~~~~~~~~~~i~~~~~s~--dg~~l~~~~~dg~v~vw~l~e 1249 (1249)
T 3sfz_A 1201 KWWNVAT-----GDSSQTFYTNGTNLKKIHVSP--DFRTYVTVDNLGILYILQVLE 1249 (1249)
T ss_dssp EEBCSSS-----CBCCCCCCCSSCCCCCCEECS--SSCCEEEECTTCCEEEECCCC
T ss_pred EEEECCC-----CceeeeeeccCCcccEEEECC--CCCEEEEecCCcEEEEEeecC
Confidence 9999877 233333222222223333343 577899999999999999874
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.6e-39 Score=399.91 Aligned_cols=491 Identities=12% Similarity=0.079 Sum_probs=344.5
Q ss_pred eeecCCCCC-eEEEEEcC--CCCEEEEEECCCcEEEEeCCC---------cceeeeCCCCCCEEEEEEEeCCCEEEEEeC
Q 001287 29 AVHYGIPAT-ASILAFDH--IQRLLAIATLDGRIKVIGGDG---------IEGLLISPSQLPYKNLEFLQNQGFLISITN 96 (1107)
Q Consensus 29 ~~~~G~~~~-i~~lafsp--~~~~LA~Gs~dg~I~iw~~~~---------~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~ 96 (1107)
....||... |++++|+| ++++||+|+.||.|+||+... ........|..+|.+++|+|++.+|++++.
T Consensus 57 ~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 136 (615)
T 1pgu_A 57 VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 136 (615)
T ss_dssp EEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEEC
T ss_pred eEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEecc
Confidence 334589999 99999999 999999999999999999942 333356679999999999999999999998
Q ss_pred C----CcEEEEEcCCCeeeeee-ccCCCeEEEEEecCCC-EEEEEcCCCcEEEEEeecCCCceeecceeecccccccccC
Q 001287 97 D----NEIQVWSLESRSLACCL-KWESNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAG 170 (1107)
Q Consensus 97 d----~~I~vWDl~s~~~~~~~-~~~~~Vt~l~~~~~~~-~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~ 170 (1107)
+ +.|.+|| .++.+..+ .|...|++++|+|+++ ++++|+.||.|++|++.. +++. ..+..|.
T Consensus 137 ~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~--~~~~---~~~~~~~------ 203 (615)
T 1pgu_A 137 GRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP--FKFS---ASDRTHH------ 203 (615)
T ss_dssp CSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT--BEEE---EEECSSS------
T ss_pred CCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC--ccee---eeecccC------
Confidence 7 5788888 45555444 6888999999999998 899999999999999653 4444 2355554
Q ss_pred CCCCCCC---CeEEEEcccCCC-CCEEEEEECCCeEEEEEccCCEEEEEe-----CCccccccccccCCCCCCCCccccC
Q 001287 171 FPLLSHQ---PVVGVLPHPNSS-GNRVLIAYENALVILWDVSEAQIIFVG-----GGKDLQLKDGVVDSPSEGDSTFLEG 241 (1107)
Q Consensus 171 ~~~~~~~---~V~~v~f~P~~~-~~~ll~~~~dg~V~vwdl~~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1107)
. .|.+++|+| + +.+|++++.||.|++||+.+++.+... +|
T Consensus 204 ------~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~----------------------- 252 (615)
T 1pgu_A 204 ------KQGSFVRDVEFSP--DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV----------------------- 252 (615)
T ss_dssp ------CTTCCEEEEEECS--TTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCC-----------------------
T ss_pred ------CCCceEEEEEECC--CCCCEEEEEeCCCeEEEEECCCCCEeEEeccccccc-----------------------
Confidence 5 899999988 6 888999999999999999998877655 44
Q ss_pred CCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeeccccc
Q 001287 242 ISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKES 321 (1107)
Q Consensus 242 ~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~ 321 (1107)
...|++++|. ++.+|++++.||.|++||+.+++. +..+..........+..+.|
T Consensus 253 -------~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~------ 306 (615)
T 1pgu_A 253 -------QGGIFALSWL--DSQKFATVGADATIRVWDVTTSKC-----------VQKWTLDKQQLGNQQVGVVA------ 306 (615)
T ss_dssp -------CSCEEEEEES--SSSEEEEEETTSEEEEEETTTTEE-----------EEEEECCTTCGGGCEEEEEE------
T ss_pred -------CCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcE-----------EEEEcCCCCcccCceeEEEe------
Confidence 7789999985 899999999999999999986532 22222211111223333322
Q ss_pred CCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeee-cCCCccceEEEccCCCCCCCCCcceEEEEccCCeE
Q 001287 322 RSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDI-TLTGSFADMILLSSAGATVGNHKADLFVLTSPGQL 400 (1107)
Q Consensus 322 ~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l-~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l 400 (1107)
+ ++..+++++.++ .+.+|.....+.+ ..+ .....+..+.+ |+ ++..+.+|.+
T Consensus 307 --~-~~~~l~~~~~~g-------~i~~~d~~~~~~~-----~~~~~~~~~v~~~~~-~~-----------l~~~~~dg~i 359 (615)
T 1pgu_A 307 --T-GNGRIISLSLDG-------TLNFYELGHDEVL-----KTISGHNKGITALTV-NP-----------LISGSYDGRI 359 (615)
T ss_dssp --E-ETTEEEEEETTS-------CEEEEETTEEEEE-----EEECCCSSCEEEEET-TT-----------TEEEETTSCE
T ss_pred --C-CCCeEEEEECCC-------CEEEEECCCCcEE-----EEEeCCCCCEEEEEe-cC-----------cEEECCCCeE
Confidence 2 556777777775 5555543321111 122 23346666666 43 5666777888
Q ss_pred EEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccC------CCCCchhhhHHHhhc---------ccc
Q 001287 401 HFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPF------GGHSSKGLSEIATFT---------KLH 465 (1107)
Q Consensus 401 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~------~~~~~~~~~~~~~~~---------~~~ 465 (1107)
.+|+...+ . ..+...+++..+ .... .......|.-..... ...
T Consensus 360 ~~w~~~~~---~------------------~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~ 417 (615)
T 1pgu_A 360 MEWSSSSM---H------------------QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANND 417 (615)
T ss_dssp EETTTTEE---E------------------CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSS
T ss_pred EEEEchhh---c------------------CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCC
Confidence 88875511 0 112333333333 1000 000011111000000 000
Q ss_pred CCC----CccCCccccccC-------CCCCCCCccccCCCCcEEEEEec-CCcEEEEeCCCCceeEEEeeccceeeeeec
Q 001287 466 SSH----TQAGHIKWPLSG-------GVPSPVPITKCHSVDRVYLAGYH-DGSVRIWDATYPVFKLICALDAEVQGIEVA 533 (1107)
Q Consensus 466 ~~~----~~~~~~~wp~~g-------g~~~~~~~~~~s~~~~~laTgs~-DgtIriWd~~~~~l~~~~~l~~~~~~~~l~ 533 (1107)
+.. ....-..|.... .+...+..++++ ++++++|+. ||.|++||+..+.+.. ..+.
T Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~----------~~~~ 485 (615)
T 1pgu_A 418 GFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF----------DLKT 485 (615)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEE----------ECSS
T ss_pred CCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccc----------cccC
Confidence 000 000000111101 122233444555 789999999 9999999998765431 1356
Q ss_pred CCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEee-cCcCEEEEEEc
Q 001287 534 GSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSL-VNSPVRALQFT 612 (1107)
Q Consensus 534 ~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-h~~~Vt~la~s 612 (1107)
+|...|++++|+|++++|++++.||.|++|++... .++..+.. |...|++++|+
T Consensus 486 ~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~-------------------------~~~~~~~~~h~~~v~~~~~s 540 (615)
T 1pgu_A 486 PLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR-------------------------EVKTSRWAFRTSKINAISWK 540 (615)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-------------------------EEEECCSCCCSSCEEEEEEC
T ss_pred CccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC-------------------------cceeEeecCCCCceeEEEEc
Confidence 88999999999999999999999999999999775 24455556 99999999999
Q ss_pred C----------CCCEEEEEeCCCeEEEEEcCCC-eEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCC
Q 001287 613 S----------SGAKLAVGFECGRVAVLDMNLL-SVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPA 681 (1107)
Q Consensus 613 p----------~~~~la~Gs~dg~V~iwd~~~~-~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~ 681 (1107)
| ++++||+|+.||.|+|||+.++ ..+ ..+.+|..+|.+++|+ |+
T Consensus 541 p~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~h~~~v~~l~~s----------------------~~ 595 (615)
T 1pgu_A 541 PAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKII---KALNAHKDGVNNLLWE----------------------TP 595 (615)
T ss_dssp CCC------CCSCCEEEEEETTSCEEEEESSCTTCCE---EETTSSTTCEEEEEEE----------------------ET
T ss_pred CccccccccccCCCEEEEEcCCCcEEEEECCCCceec---hhhhcCccceEEEEEc----------------------CC
Confidence 9 9999999999999999999987 455 4578899999999999 45
Q ss_pred ccEEEEEcCCceEEEEeCCC
Q 001287 682 EEVIIVLFKDAKISIVGGSS 701 (1107)
Q Consensus 682 ~~~L~s~s~Dg~v~v~d~~~ 701 (1107)
+. |++++.||.|++||.++
T Consensus 596 ~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 596 ST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp TE-EEEEETTSCEEEEEEC-
T ss_pred CC-eEEecCCceEEEEeeec
Confidence 77 99999999999999865
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-36 Score=388.51 Aligned_cols=564 Identities=11% Similarity=0.077 Sum_probs=327.6
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCe
Q 001287 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1107)
Q Consensus 30 ~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~ 109 (1107)
..+++...|.+++|+| +++||+|+.|+.|+|||+...+.+....|.+.|++++|+|++.+|++++.|++|++||+.+++
T Consensus 53 ~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~ 131 (902)
T 2oaj_A 53 IKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQ 131 (902)
T ss_dssp EECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTE
T ss_pred EEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCc
Confidence 3356788999999999 889999999999999999776665444588899999999999999999999999999999987
Q ss_pred eee------------eeccCCCeEEEEEecC-CCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccc-c-----C
Q 001287 110 LAC------------CLKWESNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEK-A-----G 170 (1107)
Q Consensus 110 ~~~------------~~~~~~~Vt~l~~~~~-~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~-~-----~ 170 (1107)
+.. ...|.+.|++++|+|+ ..++++|+.||.| +|++.. ++..+. +..|..... . .
T Consensus 132 ~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~--~~~~~~---~~~~~~~g~~~~~~~~~ 205 (902)
T 2oaj_A 132 LSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVE--NEIKQS---FIYELPPFAPGGDFSEK 205 (902)
T ss_dssp EEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTT--TEEEEE---ECCCBCTTCCCSTTCCC
T ss_pred cccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCC--CceEEE---EecccCCcCCCcccccc
Confidence 641 1246789999999996 4789999999999 999864 333321 333210000 0 0
Q ss_pred CCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCC
Q 001287 171 FPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEK 250 (1107)
Q Consensus 171 ~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1107)
....+...|.+++|+| ++.+|++++.||.|++||+.+++.+..+........ .+......+ ...+..
T Consensus 206 ~~~~h~~~V~~v~fsp--dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~------~~~~~~~~~-----~~~~~~ 272 (902)
T 2oaj_A 206 TNEKRTPKVIQSLYHP--NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEIN------VPQPDYIRD-----SSTNAA 272 (902)
T ss_dssp TTSCBCCCEEEEEECT--TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTT------SCCTTCCCC-----CSSCCC
T ss_pred cccccCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccC------CCCCcCCCC-----CccccC
Confidence 0012236799999999 688999999999999999999887654221100000 000000000 001245
Q ss_pred ceeEEEee---cCCC-CEEEEEEcC-----CcEEEEeCCCCCCCCCccCCCCCc---------eeeeecccccCccceEE
Q 001287 251 EISALCWA---SSSG-SILAVGYID-----GDILLWNTSTTASTKGQQTGSRNN---------VVKLELSSAERRLPVIV 312 (1107)
Q Consensus 251 ~Vtsl~w~---spdg-~~l~sg~~d-----G~I~lWd~~~~~~~~~~~~~~~~~---------~~~l~~~~~~~~~~i~~ 312 (1107)
.|++++|. +|++ ..|++|+.| +.+.+|++..... ....+.+. ..++.. . .....+..
T Consensus 273 ~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~-~-~~~~~v~~ 347 (902)
T 2oaj_A 273 KISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPR---YSITSYEGMKNYYANPKQMKIFP-L-PTNVPIVN 347 (902)
T ss_dssp EEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCC---GGGCCHHHHHHHHHSCSEEEEEC-C-SSSSCEEE
T ss_pred CeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCC---ccccchhhhhhhhcCccceEEEe-c-CCCCceEE
Confidence 79999995 2443 567777665 3788998531100 00000000 011110 0 01122333
Q ss_pred EEeeccccc--CCCCCceEEEEeCCCCCCcceEEEEEcCcc-ccccccce-eeeeeecC-CCccceEEEccCC-------
Q 001287 313 LHWSTNKES--RSNIDGRLFVYGGDEIGSEEVLTVLSLEWS-SGMENLRC-VSRVDITL-TGSFADMILLSSA------- 380 (1107)
Q Consensus 313 ~~w~~~~~~--~~~~d~~llv~gg~~~~~~~~ltvl~l~~~-~~~~~~~~-~~~~~l~~-~~~v~d~~~~p~~------- 380 (1107)
+.+....+. ....+...+++++.++ .+.+|.. .+...... .....+.. ...+..+.+.+..
T Consensus 348 ~~~~~~~sp~~~g~~d~~~l~~~s~dg-------~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~ 420 (902)
T 2oaj_A 348 ILPIPRQSPYFAGCHNPGLILLILGNG-------EIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGA 420 (902)
T ss_dssp EEECCSSCSHHHHTBSCSEEEEEETTS-------CEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHH
T ss_pred EEECCCCCCCcCCCCCceeEEEEcCCC-------cEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHH
Confidence 322110000 0112343455554443 3333322 11000000 00000111 1233333332100
Q ss_pred ------C--C-CC----------CCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEE
Q 001287 381 ------G--A-TV----------GNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAE 441 (1107)
Q Consensus 381 ------~--~-~~----------~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~ 441 (1107)
. . .+ ..+...++..+.+|.+.+||..... + ..+.+-...
T Consensus 421 ~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~-~---------------------~~~~~~~~~ 478 (902)
T 2oaj_A 421 LSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGD-I---------------------QDNASFEVN 478 (902)
T ss_dssp HHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCT-T---------------------TTTBCEEEE
T ss_pred HhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCcc-c---------------------cCCceEEee
Confidence 0 0 00 1123346666788888888844320 0 000000000
Q ss_pred EEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeE--
Q 001287 442 FMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKL-- 519 (1107)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~-- 519 (1107)
+.+ .+..+|...+..++++|++++||+|+.||+|+|||+.++....
T Consensus 479 -------------l~~-------------------~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~ 526 (902)
T 2oaj_A 479 -------------LSR-------------------TLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVE 526 (902)
T ss_dssp -------------HHH-------------------HTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC----
T ss_pred -------------chh-------------------hcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCcc
Confidence 000 0112444556677999999999999999999999997663100
Q ss_pred ------E-----------------Eee--------ccc-eeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecC
Q 001287 520 ------I-----------------CAL--------DAE-VQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNG 567 (1107)
Q Consensus 520 ------~-----------------~~l--------~~~-~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~ 567 (1107)
- ..+ +.. ..-..+.+|..+|++|+||||| +||+|+.||+|+||++..
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~ 605 (902)
T 2oaj_A 527 NRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRG 605 (902)
T ss_dssp -----------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTT
T ss_pred ccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCC
Confidence 0 000 000 0012467899999999999999 999999999999999765
Q ss_pred CCCCccceeeccCcCcceecccCCcceeEE-----EEe-ecCcCEEEEEEc-----CCC---CEEEEEeCCCeEEEEEc-
Q 001287 568 SLDAKNFLFVLETKSEVHALPEGKISLCRA-----VFS-LVNSPVRALQFT-----SSG---AKLAVGFECGRVAVLDM- 632 (1107)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~-~h~~~Vt~la~s-----p~~---~~la~Gs~dg~V~iwd~- 632 (1107)
.. .+. .+. +|...|++|+|+ ||| ++|++|+.||+|++||+
T Consensus 606 ~~-------------------------~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~ 660 (902)
T 2oaj_A 606 PA-------------------------IIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKIL 660 (902)
T ss_dssp TE-------------------------EEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred Ce-------------------------EEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEe
Confidence 41 111 122 789999999999 885 89999999999999999
Q ss_pred --CCCeEEEE--eecCCCCCCceEEEE-EeecccCccccCCCCC-CCCCCCCCCCccEEEEEcCCceEEEEeCCCcceec
Q 001287 633 --NLLSVLFF--TDDISGSSSPIISMT-WTEFKNTHSLAKNPNH-SEREVPVNPAEEVIIVLFKDAKISIVGGSSENMIS 706 (1107)
Q Consensus 633 --~~~~~~~~--~~~~~~h~~~V~~l~-fs~~~~~~~~~~~p~~-~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~i~ 706 (1107)
.++..+.. .+....|.++|.++. |+...-. .....+.. ........+++.+|+++ |..|++|+..+++++.
T Consensus 661 p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~ 737 (902)
T 2oaj_A 661 PASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKS-SCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTH 737 (902)
T ss_dssp ECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCC-BCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEE
T ss_pred cCCCCcEEEEecCceecCCCCceEEEEeEecCCCC-cccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCcccccee
Confidence 66654422 222122468888876 6521110 00000000 00000111334444444 7799999999988875
Q ss_pred CC
Q 001287 707 SS 708 (1107)
Q Consensus 707 ~~ 708 (1107)
..
T Consensus 738 k~ 739 (902)
T 2oaj_A 738 KG 739 (902)
T ss_dssp EE
T ss_pred eE
Confidence 43
No 11
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.1e-35 Score=342.98 Aligned_cols=307 Identities=15% Similarity=0.233 Sum_probs=250.8
Q ss_pred eeeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcc-eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcC
Q 001287 28 IAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE 106 (1107)
Q Consensus 28 ~~~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~ 106 (1107)
.....||.+.|++++|+|++++||+|+.||.|+|||....+ ...+.+|..+|.+++|+|++.+|++++.|++|+|||+.
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 34456999999999999999999999999999999996544 44677899999999999999999999999999999999
Q ss_pred CCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcc
Q 001287 107 SRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1107)
Q Consensus 107 s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~ 185 (1107)
+++.+..+ .|...|++++|+|+++++++|+.|++|++|++.. +.... .+.+|. ..|.++.|+
T Consensus 181 ~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~--~~~~~---~~~~h~------------~~v~~~~~~ 243 (410)
T 1vyh_C 181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT--GYCVK---TFTGHR------------EWVRMVRPN 243 (410)
T ss_dssp SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT--CCEEE---EEECCS------------SCEEEEEEC
T ss_pred CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC--CcEEE---EEeCCC------------ccEEEEEEC
Confidence 99887776 6888999999999999999999999999999864 44442 356665 789999998
Q ss_pred cCCCCCEEEEEECCCeEEEEEccCCEEEE-EeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCE
Q 001287 186 PNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1107)
Q Consensus 186 P~~~~~~ll~~~~dg~V~vwdl~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~ 264 (1107)
| ++.+|++++.||.|++||+.+++... +.+| ...|.+++|. |++.+
T Consensus 244 ~--~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h------------------------------~~~v~~~~~~-~~~~~ 290 (410)
T 1vyh_C 244 Q--DGTLIASCSNDQTVRVWVVATKECKAELREH------------------------------RHVVECISWA-PESSY 290 (410)
T ss_dssp T--TSSEEEEEETTSCEEEEETTTCCEEEEECCC------------------------------SSCEEEEEEC-CSCGG
T ss_pred C--CCCEEEEEcCCCeEEEEECCCCceeeEecCC------------------------------CceEEEEEEc-Ccccc
Confidence 8 78889999999999999999887654 4444 6678888875 65431
Q ss_pred EEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEE
Q 001287 265 LAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLT 344 (1107)
Q Consensus 265 l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~lt 344 (1107)
.. +. .. .. ..
T Consensus 291 ~~------------~~----------------------~~------------------~~----------~~-------- 300 (410)
T 1vyh_C 291 SS------------IS----------------------EA------------------TG----------SE-------- 300 (410)
T ss_dssp GG------------GG----------------------GC------------------CS----------CC--------
T ss_pred cc------------hh----------------------hh------------------cc----------cc--------
Confidence 00 00 00 00 00
Q ss_pred EEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCc
Q 001287 345 VLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPV 424 (1107)
Q Consensus 345 vl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~ 424 (1107)
T Consensus 301 -------------------------------------------------------------------------------- 300 (410)
T 1vyh_C 301 -------------------------------------------------------------------------------- 300 (410)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecC
Q 001287 425 EFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHD 504 (1107)
Q Consensus 425 ~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~D 504 (1107)
.......+.+|++|+.|
T Consensus 301 ---------------------------------------------------------------~~~~~~~g~~l~sgs~D 317 (410)
T 1vyh_C 301 ---------------------------------------------------------------TKKSGKPGPFLLSGSRD 317 (410)
T ss_dssp ----------------------------------------------------------------------CCEEEEEETT
T ss_pred ---------------------------------------------------------------ccccCCCCCEEEEEeCC
Confidence 00011223489999999
Q ss_pred CcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcc
Q 001287 505 GSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEV 584 (1107)
Q Consensus 505 gtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~ 584 (1107)
|+|++||+..+.+. ..+.+|...|++++|+|++++|++|+.||.|+||++...
T Consensus 318 ~~i~iwd~~~~~~~-----------~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~---------------- 370 (410)
T 1vyh_C 318 KTIKMWDVSTGMCL-----------MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK---------------- 370 (410)
T ss_dssp SEEEEEETTTTEEE-----------EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS----------------
T ss_pred CeEEEEECCCCceE-----------EEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----------------
Confidence 99999999988755 346789999999999999999999999999999998664
Q ss_pred eecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 001287 585 HALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN 633 (1107)
Q Consensus 585 ~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~ 633 (1107)
.++..+..|...|++++|+|++.+||+|+.||+|+|||++
T Consensus 371 ---------~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 371 ---------RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp ---------CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred ---------ceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 2456778999999999999999999999999999999864
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.5e-34 Score=370.20 Aligned_cols=473 Identities=13% Similarity=0.108 Sum_probs=329.8
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCc-ceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCee
Q 001287 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL 110 (1107)
Q Consensus 32 ~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~-~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~ 110 (1107)
.||++.|++++|+|++++||+|+.||.|+||+.... .......|.++|++++|+|++.+|++++.|+.|+|||+.+++.
T Consensus 10 ~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~ 89 (814)
T 3mkq_A 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK 89 (814)
T ss_dssp EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE
T ss_pred ecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 588999999999999999999999999999998654 4446668999999999999999999999999999999999988
Q ss_pred eeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCC
Q 001287 111 ACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1107)
Q Consensus 111 ~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~ 189 (1107)
+..+ .|.+.|++++|+|++++|++|+.||.|++|+++... .+.. .+.+|. ..|.+++|+|. +
T Consensus 90 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-~~~~---~~~~~~------------~~v~~~~~~p~-~ 152 (814)
T 3mkq_A 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-ALEQ---TFEGHE------------HFVMCVAFNPK-D 152 (814)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS-EEEE---EEECCS------------SCEEEEEEETT-E
T ss_pred EEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc-eEEE---EEcCCC------------CcEEEEEEEcC-C
Confidence 8777 588999999999999999999999999999987531 2222 245554 78999999985 4
Q ss_pred CCEEEEEECCCeEEEEEccCCEEEEE-eCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecC--CCCEEE
Q 001287 190 GNRVLIAYENALVILWDVSEAQIIFV-GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS--SGSILA 266 (1107)
Q Consensus 190 ~~~ll~~~~dg~V~vwdl~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp--dg~~l~ 266 (1107)
+..+++++.||.|++||+.++..... ..+ +...|.+++|. | ++.+|+
T Consensus 153 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-----------------------------~~~~v~~~~~~-~~~~~~~l~ 202 (814)
T 3mkq_A 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTG-----------------------------QERGVNYVDYY-PLPDKPYMI 202 (814)
T ss_dssp EEEEEEEETTSEEEEEETTCSSCSEEEECC-----------------------------CTTCCCEEEEC-CSTTCCEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcceeEEecC-----------------------------CCCCEEEEEEE-ECCCCCEEE
Confidence 66799999999999999987654322 211 14678999986 7 999999
Q ss_pred EEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEE
Q 001287 267 VGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVL 346 (1107)
Q Consensus 267 sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl 346 (1107)
+|+.||.|++||+.++.. +..+.. +..++..+. ..+++.++++++.++ .+
T Consensus 203 ~~~~dg~i~~~d~~~~~~-----------~~~~~~----~~~~v~~~~--------~~~~~~~l~~~~~dg-------~v 252 (814)
T 3mkq_A 203 TASDDLTIKIWDYQTKSC-----------VATLEG----HMSNVSFAV--------FHPTLPIIISGSEDG-------TL 252 (814)
T ss_dssp EECTTSEEEEEETTTTEE-----------EEEEEC----CSSCEEEEE--------ECSSSSEEEEEETTS-------CE
T ss_pred EEeCCCEEEEEECCCCcE-----------EEEEcC----CCCCEEEEE--------EcCCCCEEEEEeCCC-------eE
Confidence 999999999999976521 111111 223344442 455777899998876 66
Q ss_pred EcCccccccccceeeeeeec-CCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCcc
Q 001287 347 SLEWSSGMENLRCVSRVDIT-LTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVE 425 (1107)
Q Consensus 347 ~l~~~~~~~~~~~~~~~~l~-~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~ 425 (1107)
.+|.....+.+ ..+. ....+..+.+.|+.. ..+++...++.+..|+............
T Consensus 253 ~vwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 311 (814)
T 3mkq_A 253 KIWNSSTYKVE-----KTLNVGLERSWCIATHPTGR-------KNYIASGFDNGFTVLSLGNDEPTLSLDP--------- 311 (814)
T ss_dssp EEEETTTCSEE-----EEECCSSSSEEEEEECTTCG-------GGEEEEEETTEEEEEECSCCSCCEEECS---------
T ss_pred EEEECCCCcEE-----EEeecCCCcEEEEEEccCCC-------ceEEEEEeCCCEEEEEcCCCCceeEECC---------
Confidence 77754432221 2222 235788888888732 2345555566666666332211110000
Q ss_pred CCcccccCCCceeEEEEEeccCCCCCchh----hhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEE
Q 001287 426 FPGVIPISDPIMTVAEFMLLPFGGHSSKG----LSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAG 501 (1107)
Q Consensus 426 ~~~~~~~~~~~it~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTg 501 (1107)
.-.. +............ +...... ..+... ...-...+++...+..++++|++++++++
T Consensus 312 ----------~g~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~spdg~~la~~ 374 (814)
T 3mkq_A 312 ----------VGKL--VWSGGKNAAASDIFTAVIRGNEEV--EQDEPL---SLQTKELGSVDVFPQSLAHSPNGRFVTVV 374 (814)
T ss_dssp ----------SSEE--EEECCTTSCTTCEEEEECCSCCCC--CSSSCB---CCCCEEECCCSSCCSEEEECTTSSEEEEE
T ss_pred ----------CCCE--EEECcccccceeeeeeeccccccc--ccCccc---eeeeecCCCCccCCceeEECCCCCEEEEe
Confidence 0000 0000000000000 0000000 000000 00000123344455677999999999999
Q ss_pred ecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCc
Q 001287 502 YHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETK 581 (1107)
Q Consensus 502 s~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~ 581 (1107)
+ ||.+.+|++...... +...|++++|+|++++|++++.+|.|++|+.
T Consensus 375 ~-~~~~~i~~~~~~~~~----------------~~~~i~~~~~spdg~~la~~~~~g~v~l~~~---------------- 421 (814)
T 3mkq_A 375 G-DGEYVIYTALAWRNK----------------AFGKCQDFVWGPDSNSYALIDETGQIKYYKN---------------- 421 (814)
T ss_dssp E-TTEEEEEETTTTEEE----------------EEEECSEEEECTTSSCEEEECTTCCEEEEET----------------
T ss_pred c-CCEEEEEECcccccc----------------CCCceEEEEEeCCCCeEEEEeCCCcEEEEEC----------------
Confidence 8 999999998654422 1236889999999999999999999999951
Q ss_pred CcceecccCCcceeEEEEeecCcCEEEEEEcCCC---CEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEee
Q 001287 582 SEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG---AKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTE 658 (1107)
Q Consensus 582 ~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~---~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~ 658 (1107)
+..|...|.+++|+|++ .+|++++.||.|++||+.++..+. .+..|.. .+.|+
T Consensus 422 -----------------~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~---~~~~~~~---~v~~s- 477 (814)
T 3mkq_A 422 -----------------FKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVR---RIDVNAK---DVIWS- 477 (814)
T ss_dssp -----------------TEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEE---EESSCEE---EEEEC-
T ss_pred -----------------CCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEE---EEecCCC---EEEEc-
Confidence 14677889999999998 688999999999999999988773 3344543 88888
Q ss_pred cccCccccCCCCCCCCCCCCCCCccEEEEE------cCCceEEEE
Q 001287 659 FKNTHSLAKNPNHSEREVPVNPAEEVIIVL------FKDAKISIV 697 (1107)
Q Consensus 659 ~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~------s~Dg~v~v~ 697 (1107)
|++.+|+++ +.|..+.+|
T Consensus 478 ---------------------~dg~~la~~~~~~~~~~~~~~~~~ 501 (814)
T 3mkq_A 478 ---------------------DNGELVMIVNTNSNGDEASGYTLL 501 (814)
T ss_dssp ---------------------TTSSEEEEEECCCSSCSCSEEEEE
T ss_pred ---------------------CCCCEEEEEEcCcccCCceEEEEE
Confidence 668889999 555544444
No 13
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.2e-33 Score=317.38 Aligned_cols=201 Identities=14% Similarity=0.234 Sum_probs=163.5
Q ss_pred eecCCCCCeEEEEEcCC----CCEEEEEECCCcEEEEeCCCcce---eeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEE
Q 001287 30 VHYGIPATASILAFDHI----QRLLAIATLDGRIKVIGGDGIEG---LLISPSQLPYKNLEFLQNQGFLISITNDNEIQV 102 (1107)
Q Consensus 30 ~~~G~~~~i~~lafsp~----~~~LA~Gs~dg~I~iw~~~~~~~---~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~v 102 (1107)
...||...|.+++|+|+ +.+||+|+.||.|+||+...... ..+.+|..+|.+++|++++.++++++.|++|++
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~l 106 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 106 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 34699999999999985 67999999999999999865432 246789999999999999999999999999999
Q ss_pred EEcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEE
Q 001287 103 WSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVG 181 (1107)
Q Consensus 103 WDl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~ 181 (1107)
||+.+++.+..+ .+...+.+++|+|++++|++|+.+|.|++|++... +.. +.+..+. ..|.+
T Consensus 107 Wd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~--~~~---~~~~~~~------------~~v~~ 169 (321)
T 3ow8_A 107 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG--KKE---YSLDTRG------------KFILS 169 (321)
T ss_dssp EETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC--SEE---EEEECSS------------SCEEE
T ss_pred EECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC--cee---EEecCCC------------ceEEE
Confidence 999999888776 56678999999999999999999999999998753 332 3355444 67999
Q ss_pred EEcccCCCCCEEEEEECCCeEEEEEccCCEEEEE-eCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecC
Q 001287 182 VLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV-GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1107)
Q Consensus 182 v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp 260 (1107)
++|+| ++++|++++.||.|++||+.+++.+.. .+| ...|++++|. |
T Consensus 170 ~~~sp--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h------------------------------~~~v~~l~~s-p 216 (321)
T 3ow8_A 170 IAYSP--DGKYLASGAIDGIINIFDIATGKLLHTLEGH------------------------------AMPIRSLTFS-P 216 (321)
T ss_dssp EEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCC------------------------------SSCCCEEEEC-T
T ss_pred EEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEccc------------------------------CCceeEEEEc-C
Confidence 99988 788899999999999999988876543 334 5567777764 7
Q ss_pred CCCEEEEEEcCCcEEEEeCC
Q 001287 261 SGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 261 dg~~l~sg~~dG~I~lWd~~ 280 (1107)
++.+|++|+.||.|++||+.
T Consensus 217 d~~~l~s~s~dg~i~iwd~~ 236 (321)
T 3ow8_A 217 DSQLLVTASDDGYIKIYDVQ 236 (321)
T ss_dssp TSCEEEEECTTSCEEEEETT
T ss_pred CCCEEEEEcCCCeEEEEECC
Confidence 77777777777777777663
No 14
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.7e-33 Score=329.93 Aligned_cols=170 Identities=15% Similarity=0.251 Sum_probs=141.3
Q ss_pred EeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCc
Q 001287 62 IGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGL 140 (1107)
Q Consensus 62 w~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~ 140 (1107)
|.........+.+|.++|++++|+|++.+|++++.|++|+|||+.+++....+ .|...|++++|+|++++|++|+.||+
T Consensus 94 ~~~~~~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~ 173 (410)
T 1vyh_C 94 WIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMT 173 (410)
T ss_dssp CCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccCCCceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 43333344566789999999999999999999999999999999999888777 58899999999999999999999999
Q ss_pred EEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEE-EeCCc
Q 001287 141 MSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGK 219 (1107)
Q Consensus 141 V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~-~~g~~ 219 (1107)
|++|++.. +.... .+.+|. ..|.+++|+| ++.+|++++.|+.|++||+.++..+. +.+|
T Consensus 174 i~iwd~~~--~~~~~---~~~~h~------------~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h- 233 (410)
T 1vyh_C 174 IKLWDFQG--FECIR---TMHGHD------------HNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGH- 233 (410)
T ss_dssp CCEEETTS--SCEEE---CCCCCS------------SCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECC-
T ss_pred EEEEeCCC--CceeE---EEcCCC------------CCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeCC-
Confidence 99999864 34442 256665 7899999998 67889999999999999999887644 4445
Q ss_pred cccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCC
Q 001287 220 DLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1107)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~ 281 (1107)
...|.+++|. ++|.+|++|+.||+|++||+.+
T Consensus 234 -----------------------------~~~v~~~~~~-~~g~~l~s~s~D~~v~vwd~~~ 265 (410)
T 1vyh_C 234 -----------------------------REWVRMVRPN-QDGTLIASCSNDQTVRVWVVAT 265 (410)
T ss_dssp -----------------------------SSCEEEEEEC-TTSSEEEEEETTSCEEEEETTT
T ss_pred -----------------------------CccEEEEEEC-CCCCEEEEEcCCCeEEEEECCC
Confidence 5678888864 8888888888888888888753
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.2e-33 Score=317.96 Aligned_cols=292 Identities=13% Similarity=0.183 Sum_probs=235.4
Q ss_pred ceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEe
Q 001287 68 EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKY 146 (1107)
Q Consensus 68 ~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~ 146 (1107)
....+.+|.++|.+++|+|++.+|++++.|++|+|||+.++..+..+ .+...|.+++|+|++++|++|+.|+.|++|++
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~ 126 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 34467789999999999999999999999999999999999887776 57788999999999999999999999999998
Q ss_pred ecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEE-EeCCccccccc
Q 001287 147 DADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKD 225 (1107)
Q Consensus 147 d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~-~~g~~~~~~~~ 225 (1107)
....+.... ...+.+|. ..|.++.|+| ++ .+++++.|+.|++||+.+++.+. +.+|
T Consensus 127 ~~~~~~~~~-~~~~~~h~------------~~v~~~~~~~--~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h------- 183 (340)
T 1got_B 127 KTREGNVRV-SRELAGHT------------GYLSCCRFLD--DN-QIVTSSGDTTCALWDIETGQQTTTFTGH------- 183 (340)
T ss_dssp TTCSBSCEE-EEEEECCS------------SCEEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEEECCC-------
T ss_pred ccCCCccee-EEEecCCC------------ccEEEEEECC--CC-cEEEEECCCcEEEEECCCCcEEEEEcCC-------
Confidence 764332221 13355555 7899999987 44 49999999999999999987754 4445
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeeccccc
Q 001287 226 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAE 305 (1107)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~ 305 (1107)
...|++++|. |++.+|++|+.||.|++||+.++.. ..
T Consensus 184 -----------------------~~~v~~~~~~-~~~~~l~sg~~d~~v~~wd~~~~~~-----------~~-------- 220 (340)
T 1got_B 184 -----------------------TGDVMSLSLA-PDTRLFVSGACDASAKLWDVREGMC-----------RQ-------- 220 (340)
T ss_dssp -----------------------SSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCSE-----------EE--------
T ss_pred -----------------------CCceEEEEEC-CCCCEEEEEeCCCcEEEEECCCCee-----------EE--------
Confidence 7789999986 9999999999999999999864310 00
Q ss_pred CccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCC
Q 001287 306 RRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVG 385 (1107)
Q Consensus 306 ~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~ 385 (1107)
.+ .
T Consensus 221 ------~~-------------------~---------------------------------------------------- 223 (340)
T 1got_B 221 ------TF-------------------T---------------------------------------------------- 223 (340)
T ss_dssp ------EE-------------------C----------------------------------------------------
T ss_pred ------EE-------------------c----------------------------------------------------
Confidence 00 0
Q ss_pred CCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhcccc
Q 001287 386 NHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLH 465 (1107)
Q Consensus 386 ~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1107)
T Consensus 224 -------------------------------------------------------------------------------- 223 (340)
T 1got_B 224 -------------------------------------------------------------------------------- 223 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEE
Q 001287 466 SSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFC 545 (1107)
Q Consensus 466 ~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fs 545 (1107)
+|...+..++++|++++|++|+.||+|++||+........+ ....+...|++++|+
T Consensus 224 ---------------~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~---------~~~~~~~~v~~~~~s 279 (340)
T 1got_B 224 ---------------GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY---------SHDNIICGITSVSFS 279 (340)
T ss_dssp ---------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE---------CCTTCCSCEEEEEEC
T ss_pred ---------------CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE---------ccCCcccceEEEEEC
Confidence 00001112256678889999999999999999877643111 122344579999999
Q ss_pred eCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCC
Q 001287 546 FINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECG 625 (1107)
Q Consensus 546 pd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg 625 (1107)
|++++|++|+.||.|+||++... .++..+.+|...|++++|+|++++||+|+.||
T Consensus 280 ~~g~~l~~g~~d~~i~vwd~~~~-------------------------~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 334 (340)
T 1got_B 280 KSGRLLLAGYDDFNCNVWDALKA-------------------------DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334 (340)
T ss_dssp TTSSEEEEEETTSEEEEEETTTC-------------------------CEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred CCCCEEEEECCCCeEEEEEcccC-------------------------cEeeEeecCCCcEEEEEEcCCCCEEEEEcCCc
Confidence 99999999999999999998764 24567789999999999999999999999999
Q ss_pred eEEEEE
Q 001287 626 RVAVLD 631 (1107)
Q Consensus 626 ~V~iwd 631 (1107)
+|+|||
T Consensus 335 ~i~iWd 340 (340)
T 1got_B 335 FLKIWN 340 (340)
T ss_dssp CEEEEC
T ss_pred cEEecC
Confidence 999997
No 16
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-33 Score=327.68 Aligned_cols=360 Identities=13% Similarity=0.128 Sum_probs=259.2
Q ss_pred eeeeecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEeC----CCcc-------eeeeCC----------CCCCEEEEEE
Q 001287 27 RIAVHYGIPATASILAFDHIQR-LLAIATLDGRIKVIGG----DGIE-------GLLISP----------SQLPYKNLEF 84 (1107)
Q Consensus 27 ~~~~~~G~~~~i~~lafsp~~~-~LA~Gs~dg~I~iw~~----~~~~-------~~~~~~----------h~~~V~~l~f 84 (1107)
.....+.+...|++++|+|+++ +||+|+.||.|+||++ ...+ ...+.. |..+|++++|
T Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (425)
T 1r5m_A 37 KILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAW 116 (425)
T ss_dssp EECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEE
T ss_pred hheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEE
Confidence 3444567778999999999999 9999999999999999 6554 122222 6779999999
Q ss_pred EeCCCEEEEEeCCCcEEEEEcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeeccc
Q 001287 85 LQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISAD 163 (1107)
Q Consensus 85 s~d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~ 163 (1107)
+|++.+|++++.|+.|++|| .++..+..+ .|...|++++|+|++++|++++.+|.|++|++.. +..... +..+
T Consensus 117 s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~---~~~~ 190 (425)
T 1r5m_A 117 SHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVIS--GTVMQH---FELK 190 (425)
T ss_dssp CTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTT--TEEEEE---ECCC
T ss_pred cCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCC--CcEEEE---eecc
Confidence 99999999999999999999 455555544 6889999999999999999999999999999864 344322 3322
Q ss_pred ccccc---cCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEE-EeCCccccccccccCCCCCCCCccc
Q 001287 164 ALSEK---AGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFL 239 (1107)
Q Consensus 164 ~~~~~---~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~ 239 (1107)
..... ..........+.++.|+| ++ .+++++.+|.|++||+.+++... +.+|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~--------------------- 246 (425)
T 1r5m_A 191 ETGGSSINAENHSGDGSLGVDVEWVD--DD-KFVIPGPKGAIFVYQITEKTPTGKLIGH--------------------- 246 (425)
T ss_dssp ---------------CCCBSCCEEEE--TT-EEEEECGGGCEEEEETTCSSCSEEECCC---------------------
T ss_pred ccCccceeeccccCCcceeeEEEEcC--CC-EEEEEcCCCeEEEEEcCCCceeeeeccC---------------------
Confidence 20000 000001112388899987 34 59999999999999999876543 3334
Q ss_pred cCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeeccc
Q 001287 240 EGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNK 319 (1107)
Q Consensus 240 ~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~ 319 (1107)
...|++++|. |++.+|++++.||.|++||+.+.... . .+
T Consensus 247 ---------~~~i~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~-----------~--------------~~------ 285 (425)
T 1r5m_A 247 ---------HGPISVLEFN-DTNKLLLSASDDGTLRIWHGGNGNSQ-----------N--------------CF------ 285 (425)
T ss_dssp ---------SSCEEEEEEE-TTTTEEEEEETTSCEEEECSSSBSCS-----------E--------------EE------
T ss_pred ---------CCceEEEEEC-CCCCEEEEEcCCCEEEEEECCCCccc-----------e--------------Ee------
Confidence 6789999986 99999999999999999998643100 0 00
Q ss_pred ccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCe
Q 001287 320 ESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQ 399 (1107)
Q Consensus 320 ~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~ 399 (1107)
.+
T Consensus 286 -------------~~----------------------------------------------------------------- 287 (425)
T 1r5m_A 286 -------------YG----------------------------------------------------------------- 287 (425)
T ss_dssp -------------CC-----------------------------------------------------------------
T ss_pred -------------cC-----------------------------------------------------------------
Confidence 00
Q ss_pred EEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCcccccc
Q 001287 400 LHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLS 479 (1107)
Q Consensus 400 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~ 479 (1107)
+...+
T Consensus 288 ---------------------------------~~~~i------------------------------------------ 292 (425)
T 1r5m_A 288 ---------------------------------HSQSI------------------------------------------ 292 (425)
T ss_dssp ---------------------------------CSSCE------------------------------------------
T ss_pred ---------------------------------CCccE------------------------------------------
Confidence 00000
Q ss_pred CCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCce
Q 001287 480 GGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGL 559 (1107)
Q Consensus 480 gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~ 559 (1107)
..+++++++ ++++++.||.|++||+..+.+. ..+..|...|++++|+|++++|++++.||.
T Consensus 293 -------~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~-----------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 353 (425)
T 1r5m_A 293 -------VSASWVGDD-KVISCSMDGSVRLWSLKQNTLL-----------ALSIVDGVPIFAGRISQDGQKYAVAFMDGQ 353 (425)
T ss_dssp -------EEEEEETTT-EEEEEETTSEEEEEETTTTEEE-----------EEEECTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred -------EEEEECCCC-EEEEEeCCCcEEEEECCCCcEe-----------EecccCCccEEEEEEcCCCCEEEEEECCCe
Confidence 111345666 8999999999999999887755 345678889999999999999999999999
Q ss_pred EEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCc--CEEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 001287 560 VYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNS--PVRALQFTSSGAKLAVGFECGRVAVLDMNL 634 (1107)
Q Consensus 560 V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~--~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~ 634 (1107)
|++|++......... .......+ .......++..+..|.. .|++++|+|++++|++|+.||.|++||+.+
T Consensus 354 i~i~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 354 VNVYDLKKLNSKSRS--LYGNRDGI---LNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp EEEEECHHHHC-------------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred EEEEECCCCccceee--eecccccc---cCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence 999999764211000 00000000 00111235677788876 999999999999999999999999999864
No 17
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.6e-32 Score=310.89 Aligned_cols=202 Identities=20% Similarity=0.256 Sum_probs=170.4
Q ss_pred ecCCCC-CeEEEEEcCCCCEEEEEECCCcEEEEeCCCcce----eeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEc
Q 001287 31 HYGIPA-TASILAFDHIQRLLAIATLDGRIKVIGGDGIEG----LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL 105 (1107)
Q Consensus 31 ~~G~~~-~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~----~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl 105 (1107)
..||+. .|.+++|+|++++||+|+.||.|+||+...... .+..+|..+|.+++|+|++.+|++++.|++|++||+
T Consensus 11 ~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~ 90 (345)
T 3fm0_A 11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKK 90 (345)
T ss_dssp ECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred ecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEc
Confidence 347887 899999999999999999999999999865532 244689999999999999999999999999999999
Q ss_pred CCCe--eeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCC-ceeecceeecccccccccCCCCCCCCCeEE
Q 001287 106 ESRS--LACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEG-KLFQLPYNISADALSEKAGFPLLSHQPVVG 181 (1107)
Q Consensus 106 ~s~~--~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~-~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~ 181 (1107)
.++. .+..+ .|...|++++|+|++++|++|+.||+|++|+++.... ... ..+..|. ..|.+
T Consensus 91 ~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~---~~~~~h~------------~~v~~ 155 (345)
T 3fm0_A 91 NQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECV---SVLNSHT------------QDVKH 155 (345)
T ss_dssp CCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEE---EEECCCC------------SCEEE
T ss_pred cCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEE---EEecCcC------------CCeEE
Confidence 8874 34444 6889999999999999999999999999999975322 112 2355555 78999
Q ss_pred EEcccCCCCCEEEEEECCCeEEEEEccCCEEE---EEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEee
Q 001287 182 VLPHPNSSGNRVLIAYENALVILWDVSEAQII---FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA 258 (1107)
Q Consensus 182 v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~ 258 (1107)
++|+| ++.+|++++.|+.|++||+.++... .+.+| ...|++++|.
T Consensus 156 ~~~~p--~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h------------------------------~~~v~~l~~s 203 (345)
T 3fm0_A 156 VVWHP--SQELLASASYDDTVKLYREEEDDWVCCATLEGH------------------------------ESTVWSLAFD 203 (345)
T ss_dssp EEECS--SSSCEEEEETTSCEEEEEEETTEEEEEEEECCC------------------------------SSCEEEEEEC
T ss_pred EEECC--CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC------------------------------CCceEEEEEC
Confidence 99999 5778999999999999999887543 34455 7789999985
Q ss_pred cCCCCEEEEEEcCCcEEEEeCC
Q 001287 259 SSSGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 259 spdg~~l~sg~~dG~I~lWd~~ 280 (1107)
|+|++|++|+.||+|++|+..
T Consensus 204 -p~g~~l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 204 -PSGQRLASCSDDRTVRIWRQY 224 (345)
T ss_dssp -TTSSEEEEEETTSCEEEEEEE
T ss_pred -CCCCEEEEEeCCCeEEEeccc
Confidence 999999999999999999863
No 18
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.4e-33 Score=317.73 Aligned_cols=162 Identities=14% Similarity=0.163 Sum_probs=130.6
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC------------cceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCc
Q 001287 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDG------------IEGLLISPSQLPYKNLEFLQNQGFLISITNDNE 99 (1107)
Q Consensus 32 ~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~------------~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~ 99 (1107)
.+++..|.+++|+|||++||+|+ |+.+++|+... ........|..+|.+++|+++ ++|++++.||+
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~l~~~s~dg~ 104 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE-RGILVASDSGA 104 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT-TEEEEEETTSE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC-CeEEEEECCCE
Confidence 45778899999999999999888 67788886311 111233346788999999998 68899999999
Q ss_pred EEEEEcCCCeeeee-----eccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCC
Q 001287 100 IQVWSLESRSLACC-----LKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLL 174 (1107)
Q Consensus 100 I~vWDl~s~~~~~~-----~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~ 174 (1107)
|+|||+.+++.+.. ..|.+.|++++|+|++++|++|+.||+|++|++.. +++.. .+.+|.
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~--~~~~~---~~~~h~---------- 169 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ--QVVLS---SYRAHA---------- 169 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEEEE---EECCCS----------
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC--CcEEE---EEcCcC----------
Confidence 99999999865432 26889999999999999999999999999999764 55553 367776
Q ss_pred CCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEE
Q 001287 175 SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQII 213 (1107)
Q Consensus 175 ~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~ 213 (1107)
..|.+++|+|. ...+|++++.||.|++||+.+++..
T Consensus 170 --~~V~~~~~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~ 205 (344)
T 4gqb_B 170 --AQVTCVAASPH-KDSVFLSCSEDNRILLWDTRCPKPA 205 (344)
T ss_dssp --SCEEEEEECSS-CTTEEEEEETTSCEEEEETTSSSCE
T ss_pred --CceEEEEecCC-CCCceeeecccccccccccccccee
Confidence 88999999985 3346889999999999998876544
No 19
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2e-32 Score=307.17 Aligned_cols=290 Identities=17% Similarity=0.296 Sum_probs=232.8
Q ss_pred eeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeec
Q 001287 70 LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDA 148 (1107)
Q Consensus 70 ~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~ 148 (1107)
..+.+|.++|.+++|+|++.+|++++.|++|++||+.++..+..+ .+...|.+++|++++++|++|+.|+.|++|++..
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~ 86 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86 (304)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 356689999999999999999999999999999999999888777 5778999999999999999999999999999865
Q ss_pred CCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCC-EEE-EEeCCcccccccc
Q 001287 149 DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA-QII-FVGGGKDLQLKDG 226 (1107)
Q Consensus 149 ~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~-~~~-~~~g~~~~~~~~~ 226 (1107)
++.. ..+.+|. ..|.+++|+| ++.+|++|+.||+|++||+.++ .+. .+.+|
T Consensus 87 --~~~~---~~~~~h~------------~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h-------- 139 (304)
T 2ynn_A 87 --GEKV---VDFEAHP------------DYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGH-------- 139 (304)
T ss_dssp --CCEE---EEEECCS------------SCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTTEEEEEECCC--------
T ss_pred --CcEE---EEEeCCC------------CcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCcchhhhhccc--------
Confidence 4444 3366666 8899999998 6788999999999999999887 333 34455
Q ss_pred ccCCCCCCCCccccCCCCCCCCCCceeEEEeecC-CCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeeccccc
Q 001287 227 VVDSPSEGDSTFLEGISEHQPEEKEISALCWASS-SGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAE 305 (1107)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp-dg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~ 305 (1107)
...|++++|. | ++..|++|+.||+|++||+..... ...
T Consensus 140 ----------------------~~~v~~v~~~-p~~~~~l~sgs~D~~v~iwd~~~~~~-----------~~~------- 178 (304)
T 2ynn_A 140 ----------------------EHFVMCVAFN-PKDPSTFASGCLDRTVKVWSLGQSTP-----------NFT------- 178 (304)
T ss_dssp ----------------------CSCEEEEEEC-TTCTTEEEEEETTSEEEEEETTCSSC-----------SEE-------
T ss_pred ----------------------CCcEEEEEEC-CCCCCEEEEEeCCCeEEEEECCCCCc-----------cce-------
Confidence 7789999986 7 689999999999999999864310 000
Q ss_pred CccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCC
Q 001287 306 RRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVG 385 (1107)
Q Consensus 306 ~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~ 385 (1107)
+ ..+..
T Consensus 179 -------~------------------~~~~~------------------------------------------------- 184 (304)
T 2ynn_A 179 -------L------------------TTGQE------------------------------------------------- 184 (304)
T ss_dssp -------E------------------ECCCT-------------------------------------------------
T ss_pred -------e------------------ccCCc-------------------------------------------------
Confidence 0 00000
Q ss_pred CCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhcccc
Q 001287 386 NHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLH 465 (1107)
Q Consensus 386 ~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1107)
..+....+
T Consensus 185 -------------------------------------------------~~v~~~~~----------------------- 192 (304)
T 2ynn_A 185 -------------------------------------------------RGVNYVDY----------------------- 192 (304)
T ss_dssp -------------------------------------------------TCEEEEEE-----------------------
T ss_pred -------------------------------------------------CcEEEEEE-----------------------
Confidence 00000000
Q ss_pred CCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEE
Q 001287 466 SSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFC 545 (1107)
Q Consensus 466 ~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fs 545 (1107)
...+++.+|++|+.||+|+|||+..+.+. ..+.+|...|++++|+
T Consensus 193 ------------------------~~~~~~~~l~s~s~D~~i~iWd~~~~~~~-----------~~~~~h~~~v~~~~~~ 237 (304)
T 2ynn_A 193 ------------------------YPLPDKPYMITASDDLTIKIWDYQTKSCV-----------ATLEGHMSNVSFAVFH 237 (304)
T ss_dssp ------------------------CCSTTCCEEEEEETTSEEEEEETTTTEEE-----------EEEECCSSCEEEEEEC
T ss_pred ------------------------EEcCCCCEEEEEcCCCeEEEEeCCCCccc-----------eeeCCCCCCEEEEEEC
Confidence 11235568999999999999999988755 4577999999999999
Q ss_pred eCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCC--EEEEEeC
Q 001287 546 FINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGA--KLAVGFE 623 (1107)
Q Consensus 546 pd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~--~la~Gs~ 623 (1107)
|++.+|++|+.||.|+||+..+. ++...+..|...|++++|+|++. ++|+|++
T Consensus 238 p~~~~l~s~s~Dg~i~iWd~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~ 292 (304)
T 2ynn_A 238 PTLPIIISGSEDGTLKIWNSSTY-------------------------KVEKTLNVGLERSWCIATHPTGRKNYIASGFD 292 (304)
T ss_dssp SSSSEEEEEETTSCEEEEETTTC-------------------------CEEEEECCSSSSEEEEEECTTCGGGCEEEEET
T ss_pred CCCCEEEEEcCCCeEEEEECCCC-------------------------ceeeeccCCCccEEEEEECCCCCceEEEEecC
Confidence 99999999999999999998775 35677888999999999999875 6899998
Q ss_pred CCeEEEEEcCC
Q 001287 624 CGRVAVLDMNL 634 (1107)
Q Consensus 624 dg~V~iwd~~~ 634 (1107)
|| +.+|++..
T Consensus 293 ~g-~~~~~~~~ 302 (304)
T 2ynn_A 293 NG-FTVLSLGN 302 (304)
T ss_dssp TE-EEEEECC-
T ss_pred Cc-eEEEEecc
Confidence 88 67887754
No 20
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-32 Score=322.80 Aligned_cols=355 Identities=17% Similarity=0.205 Sum_probs=261.1
Q ss_pred CcEEEEeCCCcc-eeeeCCCCCCEEEEEEEeCCC-EEEEEeCCCcEEEEEc----CCCe------eeeeec---------
Q 001287 57 GRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQG-FLISITNDNEIQVWSL----ESRS------LACCLK--------- 115 (1107)
Q Consensus 57 g~I~iw~~~~~~-~~~~~~h~~~V~~l~fs~d~~-~L~S~s~d~~I~vWDl----~s~~------~~~~~~--------- 115 (1107)
..+.+|+..... .+....|.++|.+++|+|++. +|++++.|+.|++||+ .+++ ....+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (425)
T 1r5m_A 25 SIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASS 104 (425)
T ss_dssp ---------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC---
T ss_pred cccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccc
Confidence 345677775443 345556779999999999999 9999999999999999 8887 344443
Q ss_pred --cCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEE
Q 001287 116 --WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1107)
Q Consensus 116 --~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~l 193 (1107)
|.+.|++++|+|++++|++|+.+|.|++|+. ++.... .+..|. ..|.+++|+| ++.+|
T Consensus 105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~---~~~~~~---~~~~~~------------~~v~~~~~~~--~~~~l 164 (425)
T 1r5m_A 105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWNK---TGALLN---VLNFHR------------APIVSVKWNK--DGTHI 164 (425)
T ss_dssp ---CBCEEEEEECTTSSEEEEEETTSCEEEEET---TSCEEE---EECCCC------------SCEEEEEECT--TSSEE
T ss_pred cCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeC---CCCeee---eccCCC------------ccEEEEEECC--CCCEE
Confidence 3568999999999999999999999999983 244442 355555 7899999988 68889
Q ss_pred EEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCc
Q 001287 194 LIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGD 273 (1107)
Q Consensus 194 l~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~ 273 (1107)
++++.||.|++||+.+++............ .... ..........+.+++|. ++ ..+++++.||.
T Consensus 165 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---------~~~~-----~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~g~ 228 (425)
T 1r5m_A 165 ISMDVENVTILWNVISGTVMQHFELKETGG---------SSIN-----AENHSGDGSLGVDVEWV-DD-DKFVIPGPKGA 228 (425)
T ss_dssp EEEETTCCEEEEETTTTEEEEEECCC-----------------------------CCCBSCCEEE-ET-TEEEEECGGGC
T ss_pred EEEecCCeEEEEECCCCcEEEEeeccccCc---------ccee-----eccccCCcceeeEEEEc-CC-CEEEEEcCCCe
Confidence 999999999999999988765442200000 0000 00000012338899986 66 46899999999
Q ss_pred EEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCcccc
Q 001287 274 ILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSG 353 (1107)
Q Consensus 274 I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~ 353 (1107)
|++||+.+.... . .+ . +
T Consensus 229 i~~~d~~~~~~~-----------~--------------~~---------~----------~------------------- 245 (425)
T 1r5m_A 229 IFVYQITEKTPT-----------G--------------KL---------I----------G------------------- 245 (425)
T ss_dssp EEEEETTCSSCS-----------E--------------EE---------C----------C-------------------
T ss_pred EEEEEcCCCcee-----------e--------------ee---------c----------c-------------------
Confidence 999999753100 0 00 0 0
Q ss_pred ccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccC
Q 001287 354 MENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPIS 433 (1107)
Q Consensus 354 ~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (1107)
+
T Consensus 246 -------------------------------------------------------------------------------~ 246 (425)
T 1r5m_A 246 -------------------------------------------------------------------------------H 246 (425)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred CCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCC
Q 001287 434 DPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDAT 513 (1107)
Q Consensus 434 ~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~ 513 (1107)
...+ ..+++++++++|++|+.||.|++||+.
T Consensus 247 ~~~i-------------------------------------------------~~~~~~~~~~~l~~~~~d~~i~i~d~~ 277 (425)
T 1r5m_A 247 HGPI-------------------------------------------------SVLEFNDTNKLLLSASDDGTLRIWHGG 277 (425)
T ss_dssp SSCE-------------------------------------------------EEEEEETTTTEEEEEETTSCEEEECSS
T ss_pred CCce-------------------------------------------------EEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 0000 112455667799999999999999998
Q ss_pred CCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcc
Q 001287 514 YPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKIS 593 (1107)
Q Consensus 514 ~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 593 (1107)
.+.+. ..+.+|...|++++|+|++ +|++++.||.|++|++...
T Consensus 278 ~~~~~-----------~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~------------------------- 320 (425)
T 1r5m_A 278 NGNSQ-----------NCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN------------------------- 320 (425)
T ss_dssp SBSCS-----------EEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT-------------------------
T ss_pred CCccc-----------eEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC-------------------------
Confidence 77654 3466788999999999999 9999999999999999765
Q ss_pred eeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCe--------------------EEEEeecCCCCCC--ce
Q 001287 594 LCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLS--------------------VLFFTDDISGSSS--PI 651 (1107)
Q Consensus 594 ~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~--------------------~~~~~~~~~~h~~--~V 651 (1107)
.++..+..|...|++++|+|++++|++|+.||.|+|||+..+. .+ ..+.+|.. +|
T Consensus 321 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v 397 (425)
T 1r5m_A 321 TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLY---ASYQSSQDNDYI 397 (425)
T ss_dssp EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEE---EEECCTTCCCCE
T ss_pred cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhh---hhhcCcccCCce
Confidence 3566777899999999999999999999999999999998776 55 45567866 99
Q ss_pred EEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCC
Q 001287 652 ISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1107)
Q Consensus 652 ~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~ 700 (1107)
.+++|+ |++.+|++++.||.|++||.+
T Consensus 398 ~~~~~s----------------------~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 398 FDLSWN----------------------CAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEEEC----------------------TTSSEEEEEESSSCCEEEECC
T ss_pred EEEEcc----------------------CCCceEEEEecCceEEEEeec
Confidence 999999 568899999999999999974
No 21
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.9e-33 Score=326.11 Aligned_cols=312 Identities=13% Similarity=0.204 Sum_probs=239.2
Q ss_pred eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEee
Q 001287 69 GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1107)
Q Consensus 69 ~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d 147 (1107)
...+.+|.++|.+++|+|++.+|+|++.|++|+|||+.+++....+ .|...|.+++|+|++++|++|+.|+.|++|++.
T Consensus 59 ~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~ 138 (380)
T 3iz6_a 59 CRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLS 138 (380)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECC
T ss_pred eecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECC
Confidence 3467889999999999999999999999999999999999887776 577889999999999999999999999999987
Q ss_pred cCCCce--eecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccc
Q 001287 148 ADEGKL--FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKD 225 (1107)
Q Consensus 148 ~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~ 225 (1107)
.....- ......+.+|. +.|.++.|.|. .+.+|++++.|++|++||+.+++.+..++...
T Consensus 139 ~~~~~~~~~~~~~~~~gh~------------~~v~~~~~~~~-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~----- 200 (380)
T 3iz6_a 139 SQADRDGNMPVSRVLTGHK------------GYASSCQYVPD-QETRLITGSGDQTCVLWDVTTGQRISIFGSEF----- 200 (380)
T ss_dssp CCSSCCCSSTTCCBCCCCS------------SCCCCCBCCSS-SSSCEEEECTTSCEEEECTTTCCEEEEECCCS-----
T ss_pred CCccccCCccceeeccCCC------------cceEEEEEecC-CCCEEEEECCCCcEEEEEcCCCcEEEEeeccc-----
Confidence 421110 00011244444 78999999986 34559999999999999999988766543200
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeeccccc
Q 001287 226 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAE 305 (1107)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~ 305 (1107)
...+...|.+++|.++++.+|++|+.||+|++||+...... +
T Consensus 201 -------------------~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~----------~--------- 242 (380)
T 3iz6_a 201 -------------------PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA----------V--------- 242 (380)
T ss_dssp -------------------SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCC----------C---------
T ss_pred -------------------CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcc----------e---------
Confidence 00126789999987668999999999999999998632000 0
Q ss_pred CccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCC
Q 001287 306 RRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVG 385 (1107)
Q Consensus 306 ~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~ 385 (1107)
..+
T Consensus 243 -----~~~------------------------------------------------------------------------ 245 (380)
T 3iz6_a 243 -----RTY------------------------------------------------------------------------ 245 (380)
T ss_dssp -----EEE------------------------------------------------------------------------
T ss_pred -----EEE------------------------------------------------------------------------
Confidence 000
Q ss_pred CCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhcccc
Q 001287 386 NHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLH 465 (1107)
Q Consensus 386 ~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1107)
T Consensus 246 -------------------------------------------------------------------------------- 245 (380)
T 3iz6_a 246 -------------------------------------------------------------------------------- 245 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEE
Q 001287 466 SSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFC 545 (1107)
Q Consensus 466 ~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fs 545 (1107)
.+|...+..++++|++++|+||+.||+|+|||+..+.....+..... ....+...|++++|+
T Consensus 246 --------------~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s 307 (380)
T 3iz6_a 246 --------------HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPD----RNDNELPIVTSVAFS 307 (380)
T ss_dssp --------------CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCS----SSCCSSCSCSEEEEC
T ss_pred --------------CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccc----ccccccCceEEEEEC
Confidence 01111223346778888999999999999999998875533322111 012334469999999
Q ss_pred eCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEE----eecCcCEEEEEEcCCCCEEEEE
Q 001287 546 FINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVF----SLVNSPVRALQFTSSGAKLAVG 621 (1107)
Q Consensus 546 pd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~h~~~Vt~la~sp~~~~la~G 621 (1107)
|++++|++|+.||.|+||+..... ++..+ ..|.+.|++++|+|++++||+|
T Consensus 308 ~~g~~l~~g~~dg~i~vwd~~~~~-------------------------~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg 362 (380)
T 3iz6_a 308 ISGRLLFAGYSNGDCYVWDTLLAE-------------------------MVLNLGTLQNSHEGRISCLGLSSDGSALCTG 362 (380)
T ss_dssp SSSSEEEEECTTSCEEEEETTTCC-------------------------EEEEECCSCSSCCCCCCEEEECSSSSEEEEE
T ss_pred CCCCEEEEEECCCCEEEEECCCCc-------------------------eEEEEecccCCCCCceEEEEECCCCCEEEEe
Confidence 999999999999999999986641 22333 5799999999999999999999
Q ss_pred eCCCeEEEEEcCCCe
Q 001287 622 FECGRVAVLDMNLLS 636 (1107)
Q Consensus 622 s~dg~V~iwd~~~~~ 636 (1107)
+.||+|+||++.+.+
T Consensus 363 s~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 363 SWDKNLKIWAFSGHR 377 (380)
T ss_dssp CTTSCEEEEECCSSS
T ss_pred eCCCCEEEEecCCCc
Confidence 999999999998754
No 22
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.7e-32 Score=308.46 Aligned_cols=285 Identities=16% Similarity=0.192 Sum_probs=233.4
Q ss_pred ccCCCeEEEEEecC----CCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCC
Q 001287 115 KWESNITAFSVISG----SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1107)
Q Consensus 115 ~~~~~Vt~l~~~~~----~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~ 190 (1107)
.|.+.|++++|+++ +.+|++|+.|++|+||+++.....+ .+.+.+|. ..|.++.|+| ++
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~---~~~l~gh~------------~~v~~~~~~~--~~ 92 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDL---QWSLEGHQ------------LGVVSVDISH--TL 92 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEE---EEEECCCS------------SCEEEEEECS--SS
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeee---eeeeccCC------------CCEEEEEECC--CC
Confidence 68899999999875 5699999999999999998532222 24577776 8899999988 67
Q ss_pred CEEEEEECCCeEEEEEccCCEEEEEe-CCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEE
Q 001287 191 NRVLIAYENALVILWDVSEAQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1107)
Q Consensus 191 ~~ll~~~~dg~V~vwdl~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~ 269 (1107)
.++++++.|+.|++||+.+++.+... .+ ...+.+++|. |+|++|++|+
T Consensus 93 ~~l~s~s~D~~i~lWd~~~~~~~~~~~~~------------------------------~~~~~~~~~s-pdg~~l~~g~ 141 (321)
T 3ow8_A 93 PIAASSSLDAHIRLWDLENGKQIKSIDAG------------------------------PVDAWTLAFS-PDSQYLATGT 141 (321)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECC------------------------------TTCCCCEEEC-TTSSEEEEEC
T ss_pred CEEEEEeCCCcEEEEECCCCCEEEEEeCC------------------------------CccEEEEEEC-CCCCEEEEEc
Confidence 78999999999999999998775433 33 5567889985 9999999999
Q ss_pred cCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcC
Q 001287 270 IDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLE 349 (1107)
Q Consensus 270 ~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~ 349 (1107)
.||.|++|++.++.. .. .+ .+
T Consensus 142 ~dg~v~i~~~~~~~~-----------~~--------------~~-------------------~~--------------- 162 (321)
T 3ow8_A 142 HVGKVNIFGVESGKK-----------EY--------------SL-------------------DT--------------- 162 (321)
T ss_dssp TTSEEEEEETTTCSE-----------EE--------------EE-------------------EC---------------
T ss_pred CCCcEEEEEcCCCce-----------eE--------------Ee-------------------cC---------------
Confidence 999999999865410 00 00 00
Q ss_pred ccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcc
Q 001287 350 WSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGV 429 (1107)
Q Consensus 350 ~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (1107)
T Consensus 163 -------------------------------------------------------------------------------- 162 (321)
T 3ow8_A 163 -------------------------------------------------------------------------------- 162 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEE
Q 001287 430 IPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRI 509 (1107)
Q Consensus 430 ~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIri 509 (1107)
+.. .+..++++|++++|++|+.||+|++
T Consensus 163 ---~~~-------------------------------------------------~v~~~~~spdg~~lasg~~dg~i~i 190 (321)
T 3ow8_A 163 ---RGK-------------------------------------------------FILSIAYSPDGKYLASGAIDGIINI 190 (321)
T ss_dssp ---SSS-------------------------------------------------CEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ---CCc-------------------------------------------------eEEEEEECCCCCEEEEEcCCCeEEE
Confidence 000 0011256788889999999999999
Q ss_pred EeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceeccc
Q 001287 510 WDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPE 589 (1107)
Q Consensus 510 Wd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (1107)
||+.++.+. ..+.+|..+|++++|+|++++|++|+.||.|+||++...
T Consensus 191 wd~~~~~~~-----------~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~--------------------- 238 (321)
T 3ow8_A 191 FDIATGKLL-----------HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA--------------------- 238 (321)
T ss_dssp EETTTTEEE-----------EEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC---------------------
T ss_pred EECCCCcEE-----------EEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc---------------------
Confidence 999988754 346789999999999999999999999999999998764
Q ss_pred CCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCC
Q 001287 590 GKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNP 669 (1107)
Q Consensus 590 ~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p 669 (1107)
.+...+.+|...|++++|+|++++|++|+.||+|+|||+.++..+ ..+.+|...|.+++|+
T Consensus 239 ----~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~---~~~~~h~~~v~~v~~s------------ 299 (321)
T 3ow8_A 239 ----NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV---HTFFDHQDQVWGVKYN------------ 299 (321)
T ss_dssp ----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE---EEECCCSSCEEEEEEC------------
T ss_pred ----ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEE---EEEcCCCCcEEEEEEC------------
Confidence 245677899999999999999999999999999999999999887 4567799999999999
Q ss_pred CCCCCCCCCCCCccEEEEEcCCceEEEEeC
Q 001287 670 NHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1107)
Q Consensus 670 ~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~ 699 (1107)
|++.+|++++.|++|++||.
T Consensus 300 ----------~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 300 ----------GNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp ----------TTSSEEEEEETTCCEEEEEC
T ss_pred ----------CCCCEEEEEeCCCeEEEEeC
Confidence 56888999999999999995
No 23
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6.4e-32 Score=308.16 Aligned_cols=201 Identities=16% Similarity=0.228 Sum_probs=171.5
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCc-ceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCe
Q 001287 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1107)
Q Consensus 31 ~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~-~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~ 109 (1107)
..||.+.|.+++|+|++++||+|+.||.|+||+.... .......|..+|.+++|+|++.+|++++.|+.|++||+.++.
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~ 130 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE 130 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCC
Confidence 4599999999999999999999999999999998544 444667899999999999999999999999999999998763
Q ss_pred ----eeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEc
Q 001287 110 ----LACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1107)
Q Consensus 110 ----~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f 184 (1107)
....+ .|.+.|+++.|++++. +++|+.||+|++|++.. +... ..+.+|. ..|.+++|
T Consensus 131 ~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~--~~~~---~~~~~h~------------~~v~~~~~ 192 (340)
T 1got_B 131 GNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIET--GQQT---TTFTGHT------------GDVMSLSL 192 (340)
T ss_dssp BSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTT--TEEE---EEECCCS------------SCEEEEEE
T ss_pred CcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCC--CcEE---EEEcCCC------------CceEEEEE
Confidence 23333 6889999999998775 88999999999999764 4444 2366666 78999999
Q ss_pred ccCCCCCEEEEEECCCeEEEEEccCCEEEE-EeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCC
Q 001287 185 HPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS 263 (1107)
Q Consensus 185 ~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~ 263 (1107)
+| ++.++++|+.||.|++||+.++.... +.+| ...|++++|. |+|.
T Consensus 193 ~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h------------------------------~~~v~~v~~~-p~~~ 239 (340)
T 1got_B 193 AP--DTRLFVSGACDASAKLWDVREGMCRQTFTGH------------------------------ESDINAICFF-PNGN 239 (340)
T ss_dssp CT--TSSEEEEEETTSCEEEEETTTCSEEEEECCC------------------------------SSCEEEEEEC-TTSS
T ss_pred CC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCC------------------------------cCCEEEEEEc-CCCC
Confidence 98 67889999999999999999887654 4445 7789999986 9999
Q ss_pred EEEEEEcCCcEEEEeCCCC
Q 001287 264 ILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 264 ~l~sg~~dG~I~lWd~~~~ 282 (1107)
+|++|+.||+|++||+.+.
T Consensus 240 ~l~s~s~d~~v~iwd~~~~ 258 (340)
T 1got_B 240 AFATGSDDATCRLFDLRAD 258 (340)
T ss_dssp EEEEEETTSCEEEEETTTT
T ss_pred EEEEEcCCCcEEEEECCCC
Confidence 9999999999999998643
No 24
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.4e-32 Score=315.89 Aligned_cols=319 Identities=14% Similarity=0.156 Sum_probs=217.5
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeC------CCcEEEEEcCCCeee--
Q 001287 40 ILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN------DNEIQVWSLESRSLA-- 111 (1107)
Q Consensus 40 ~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~------d~~I~vWDl~s~~~~-- 111 (1107)
-+.+.++..++.. ..+.....|+++... ...|+..|.+++|+|||.+|++++. |+.|++|+..++...
T Consensus 10 g~d~g~~~~~~~~-~g~~~~~~w~~p~~~---p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~ 85 (357)
T 4g56_B 10 GVDLGTENLYFQS-NGSSKGSAWGRPVTA---PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES 85 (357)
T ss_dssp ----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG
T ss_pred CCCCCccceEEec-CCCccccccCCCCCC---cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee
Confidence 3566666666544 446778999885432 3569999999999999999999998 678999998877532
Q ss_pred ---eeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCC
Q 001287 112 ---CCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1107)
Q Consensus 112 ---~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1107)
....|...|++++|+|++.+ ++++.||+|+||++...+..... .+...+|. ..|.+++|+|
T Consensus 86 ~~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~~~~-~~~~~~h~------------~~V~~v~~sp-- 149 (357)
T 4g56_B 86 LCTAGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKESLLVN-KFAKYEHD------------DIVKTLSVFS-- 149 (357)
T ss_dssp GCSEEEECSSCEEEEEEETTTEE-EEEETTSCEEEC--------CCC-CEEECCCS------------SCEEEEEECS--
T ss_pred EecccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeeccccceeEEE-eeccCCCC------------CCEEEEEECC--
Confidence 33468889999999998764 56778999999998753322221 23344554 8899999988
Q ss_pred CCCEEEEEECCCeEEEEEccCCEEEEE-eCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCC-EEE
Q 001287 189 SGNRVLIAYENALVILWDVSEAQIIFV-GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILA 266 (1107)
Q Consensus 189 ~~~~ll~~~~dg~V~vwdl~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~-~l~ 266 (1107)
++++|++++.||.|++||+.+++.+.. .+| ...|++++|. +++. .++
T Consensus 150 dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h------------------------------~~~v~~v~~s-~~~~~~~~ 198 (357)
T 4g56_B 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAH------------------------------SSEVNCVAAC-PGKDTIFL 198 (357)
T ss_dssp SSSEEEEEETTSCEEEEETTTTEEEEEECCC------------------------------SSCEEEEEEC-TTCSSCEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEcCC------------------------------CCCEEEEEEc-cCCCceee
Confidence 788899999999999999999987654 445 7789999985 7774 789
Q ss_pred EEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEE
Q 001287 267 VGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVL 346 (1107)
Q Consensus 267 sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl 346 (1107)
+++.||.|++||+.+++... .+.. ..
T Consensus 199 s~~~dg~v~~wd~~~~~~~~-----------~~~~---------------------~~---------------------- 224 (357)
T 4g56_B 199 SCGEDGRILLWDTRKPKPAT-----------RIDF---------------------CA---------------------- 224 (357)
T ss_dssp EEETTSCEEECCTTSSSCBC-----------BCCC---------------------TT----------------------
T ss_pred eeccCCceEEEECCCCceee-----------eeee---------------------cc----------------------
Confidence 99999999999987542111 0000 00
Q ss_pred EcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccC
Q 001287 347 SLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEF 426 (1107)
Q Consensus 347 ~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 426 (1107)
T Consensus 225 -------------------------------------------------------------------------------- 224 (357)
T 4g56_B 225 -------------------------------------------------------------------------------- 224 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCC-CcEEEEEecCC
Q 001287 427 PGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSV-DRVYLAGYHDG 505 (1107)
Q Consensus 427 ~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~-~~~laTgs~Dg 505 (1107)
+...+ ..++++|+ +.+|++|+.|+
T Consensus 225 ------~~~~v-------------------------------------------------~~v~~sp~~~~~la~g~~d~ 249 (357)
T 4g56_B 225 ------SDTIP-------------------------------------------------TSVTWHPEKDDTFACGDETG 249 (357)
T ss_dssp ------CCSCE-------------------------------------------------EEEEECTTSTTEEEEEESSS
T ss_pred ------ccccc-------------------------------------------------cchhhhhcccceEEEeeccc
Confidence 00000 01133343 35899999999
Q ss_pred cEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCC-CeEEEeccCceEEEEEecCCCCCccceeeccCcCcc
Q 001287 506 SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN-SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEV 584 (1107)
Q Consensus 506 tIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~-~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~ 584 (1107)
.|++||+..+.+. ..+.+|...|++|+|+|++ ++|++|+.||+|+||++...
T Consensus 250 ~i~~wd~~~~~~~-----------~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~---------------- 302 (357)
T 4g56_B 250 NVSLVNIKNPDSA-----------QTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS---------------- 302 (357)
T ss_dssp CEEEEESSCGGGC-----------EEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC----------------
T ss_pred ceeEEECCCCcEe-----------EEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC----------------
Confidence 9999999987755 4477899999999999987 57999999999999998764
Q ss_pred eecccCCcceeEEEEeecCcCEEEEEEcC-CCCEEEEEeCCCeEEEEEcCCC
Q 001287 585 HALPEGKISLCRAVFSLVNSPVRALQFTS-SGAKLAVGFECGRVAVLDMNLL 635 (1107)
Q Consensus 585 ~~~~~~~g~~~~~~~~~h~~~Vt~la~sp-~~~~la~Gs~dg~V~iwd~~~~ 635 (1107)
++ ....+|...|++|+|+| ++++||+|+.||+|++||+...
T Consensus 303 ---------~~-~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 303 ---------EV-FRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp ---------EE-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred ---------cE-eEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 12 33458999999999998 7999999999999999999754
No 25
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.7e-31 Score=341.70 Aligned_cols=289 Identities=17% Similarity=0.296 Sum_probs=232.5
Q ss_pred eeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeec
Q 001287 70 LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDA 148 (1107)
Q Consensus 70 ~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~ 148 (1107)
..+.+|.++|++++|+|++.+|++++.||.|+|||+.+++.+..+ .|.+.|++++|+|++++|++|+.||.|+||++..
T Consensus 7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 86 (814)
T 3mkq_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86 (814)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 355679999999999999999999999999999999999888777 5889999999999999999999999999999874
Q ss_pred CCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCC-EEE-EEeCCcccccccc
Q 001287 149 DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA-QII-FVGGGKDLQLKDG 226 (1107)
Q Consensus 149 ~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~-~~~-~~~g~~~~~~~~~ 226 (1107)
++... .+.+|. ..|.+++|+| ++.+|++++.||.|++||+.++ ... ...+|
T Consensus 87 --~~~~~---~~~~~~------------~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-------- 139 (814)
T 3mkq_A 87 --GEKVV---DFEAHP------------DYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGH-------- 139 (814)
T ss_dssp --CCEEE---EEECCS------------SCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECC--------
T ss_pred --CcEEE---EEecCC------------CCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCC--------
Confidence 44442 355565 7899999988 6888999999999999999986 443 34445
Q ss_pred ccCCCCCCCCccccCCCCCCCCCCceeEEEeecC-CCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeeccccc
Q 001287 227 VVDSPSEGDSTFLEGISEHQPEEKEISALCWASS-SGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAE 305 (1107)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp-dg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~ 305 (1107)
...|++++|. | ++..|++++.||.|++||+.+.... .
T Consensus 140 ----------------------~~~v~~~~~~-p~~~~~l~~~~~dg~v~vwd~~~~~~~-----------~-------- 177 (814)
T 3mkq_A 140 ----------------------EHFVMCVAFN-PKDPSTFASGCLDRTVKVWSLGQSTPN-----------F-------- 177 (814)
T ss_dssp ----------------------SSCEEEEEEE-TTEEEEEEEEETTSEEEEEETTCSSCS-----------E--------
T ss_pred ----------------------CCcEEEEEEE-cCCCCEEEEEeCCCeEEEEECCCCcce-----------e--------
Confidence 6789999996 8 8999999999999999998643100 0
Q ss_pred CccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCC
Q 001287 306 RRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVG 385 (1107)
Q Consensus 306 ~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~ 385 (1107)
.+ ..+.
T Consensus 178 ------~~------------------~~~~-------------------------------------------------- 183 (814)
T 3mkq_A 178 ------TL------------------TTGQ-------------------------------------------------- 183 (814)
T ss_dssp ------EE------------------ECCC--------------------------------------------------
T ss_pred ------EE------------------ecCC--------------------------------------------------
Confidence 00 0000
Q ss_pred CCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhcccc
Q 001287 386 NHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLH 465 (1107)
Q Consensus 386 ~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1107)
..
T Consensus 184 ------------------------------------------------~~------------------------------ 185 (814)
T 3mkq_A 184 ------------------------------------------------ER------------------------------ 185 (814)
T ss_dssp ------------------------------------------------TT------------------------------
T ss_pred ------------------------------------------------CC------------------------------
Confidence 00
Q ss_pred CCCCccCCccccccCCCCCCCCccccCC--CCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEE
Q 001287 466 SSHTQAGHIKWPLSGGVPSPVPITKCHS--VDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLS 543 (1107)
Q Consensus 466 ~~~~~~~~~~wp~~gg~~~~~~~~~~s~--~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~ 543 (1107)
.+..++++| ++.+|++|+.||+|++||+..+.+. ..+.+|...|++++
T Consensus 186 -------------------~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-----------~~~~~~~~~v~~~~ 235 (814)
T 3mkq_A 186 -------------------GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV-----------ATLEGHMSNVSFAV 235 (814)
T ss_dssp -------------------CCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEE-----------EEEECCSSCEEEEE
T ss_pred -------------------CEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE-----------EEEcCCCCCEEEEE
Confidence 001113333 6779999999999999999887754 34668889999999
Q ss_pred EEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCC--EEEEE
Q 001287 544 FCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGA--KLAVG 621 (1107)
Q Consensus 544 fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~--~la~G 621 (1107)
|+|++++|++++.||.|++|++... .+...+..|...|++++|+|++. ++++|
T Consensus 236 ~~~~~~~l~~~~~dg~v~vwd~~~~-------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 290 (814)
T 3mkq_A 236 FHPTLPIIISGSEDGTLKIWNSSTY-------------------------KVEKTLNVGLERSWCIATHPTGRKNYIASG 290 (814)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTC-------------------------SEEEEECCSSSSEEEEEECTTCGGGEEEEE
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCC-------------------------cEEEEeecCCCcEEEEEEccCCCceEEEEE
Confidence 9999999999999999999998765 25667788999999999999986 57777
Q ss_pred eCCCeEEEEEcCCC
Q 001287 622 FECGRVAVLDMNLL 635 (1107)
Q Consensus 622 s~dg~V~iwd~~~~ 635 (1107)
+.++ +.+|++...
T Consensus 291 ~~~~-~~~~~~~~~ 303 (814)
T 3mkq_A 291 FDNG-FTVLSLGND 303 (814)
T ss_dssp ETTE-EEEEECSCC
T ss_pred eCCC-EEEEEcCCC
Confidence 6554 888987653
No 26
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.5e-32 Score=309.44 Aligned_cols=320 Identities=11% Similarity=0.124 Sum_probs=257.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCc-ceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeee
Q 001287 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGI-EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACC 113 (1107)
Q Consensus 35 ~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~-~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~ 113 (1107)
...|.+++|+|+|+++|++..++.+.+|..... ..+...+|..+|++++|+|++.+|++++ |+.|++||+.++.....
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~ 87 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP 87 (337)
T ss_dssp EEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC
T ss_pred CCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceee
Confidence 456899999999999999998888877766443 3445568999999999999999999998 99999999988753222
Q ss_pred ---e---ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccC
Q 001287 114 ---L---KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1107)
Q Consensus 114 ---~---~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~ 187 (1107)
+ .+...|++++|+|+++++++|+.+|.|++|+++....... ..+..|. ..|.+++|+|
T Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~---~~~~~~~------------~~i~~~~~~~- 151 (337)
T 1gxr_A 88 VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK---AELTSSA------------PACYALAISP- 151 (337)
T ss_dssp SEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEE---EEEECSS------------SCEEEEEECT-
T ss_pred eecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCccee---eecccCC------------CceEEEEECC-
Confidence 1 5778999999999999999999999999999876432222 2345444 7799999988
Q ss_pred CCCCEEEEEECCCeEEEEEccCCEEEEEe-CCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEE
Q 001287 188 SSGNRVLIAYENALVILWDVSEAQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILA 266 (1107)
Q Consensus 188 ~~~~~ll~~~~dg~V~vwdl~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~ 266 (1107)
++.++++++.||.|++||+.+++..... +| ...|++++|. |++++|+
T Consensus 152 -~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~------------------------------~~~i~~~~~~-~~~~~l~ 199 (337)
T 1gxr_A 152 -DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH------------------------------TDGASCIDIS-NDGTKLW 199 (337)
T ss_dssp -TSSEEEEEETTSCEEEEETTTTEEEEEECCC------------------------------SSCEEEEEEC-TTSSEEE
T ss_pred -CCCEEEEEeCCCcEEEEeCCCCceeeeeecc------------------------------cCceEEEEEC-CCCCEEE
Confidence 6888999999999999999998776543 34 6789999986 9999999
Q ss_pred EEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEE
Q 001287 267 VGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVL 346 (1107)
Q Consensus 267 sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl 346 (1107)
+++.||.|++||+.+... +. .+
T Consensus 200 ~~~~dg~i~~~d~~~~~~-----------~~-----------------------------------------------~~ 221 (337)
T 1gxr_A 200 TGGLDNTVRSWDLREGRQ-----------LQ-----------------------------------------------QH 221 (337)
T ss_dssp EEETTSEEEEEETTTTEE-----------EE-----------------------------------------------EE
T ss_pred EEecCCcEEEEECCCCce-----------Ee-----------------------------------------------ee
Confidence 999999999999864310 00 00
Q ss_pred EcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccC
Q 001287 347 SLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEF 426 (1107)
Q Consensus 347 ~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 426 (1107)
. .. +.
T Consensus 222 ~-------------------~~-----------------------------~~--------------------------- 226 (337)
T 1gxr_A 222 D-------------------FT-----------------------------SQ--------------------------- 226 (337)
T ss_dssp E-------------------CS-----------------------------SC---------------------------
T ss_pred c-------------------CC-----------------------------Cc---------------------------
Confidence 0 00 00
Q ss_pred CcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCc
Q 001287 427 PGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGS 506 (1107)
Q Consensus 427 ~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~Dgt 506 (1107)
+..++++|+++++++|+.||.
T Consensus 227 -----------------------------------------------------------v~~~~~s~~~~~l~~~~~~~~ 247 (337)
T 1gxr_A 227 -----------------------------------------------------------IFSLGYCPTGEWLAVGMESSN 247 (337)
T ss_dssp -----------------------------------------------------------EEEEEECTTSSEEEEEETTSC
T ss_pred -----------------------------------------------------------eEEEEECCCCCEEEEEcCCCc
Confidence 001145677779999999999
Q ss_pred EEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCccee
Q 001287 507 VRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHA 586 (1107)
Q Consensus 507 IriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~ 586 (1107)
|++||+...... .+..|...|++++|+|++++|++++.||.|++|++....
T Consensus 248 i~~~~~~~~~~~------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~----------------- 298 (337)
T 1gxr_A 248 VEVLHVNKPDKY------------QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA----------------- 298 (337)
T ss_dssp EEEEETTSSCEE------------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----------------
T ss_pred EEEEECCCCCeE------------EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCe-----------------
Confidence 999999887633 356888999999999999999999999999999988752
Q ss_pred cccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 001287 587 LPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN 633 (1107)
Q Consensus 587 ~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~ 633 (1107)
.+ ....|...|++++|+|++++|++|+.||.|++||+.
T Consensus 299 --------~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 299 --------SI-FQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp --------EE-EEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred --------EE-EEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 12 334689999999999999999999999999999973
No 27
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=6.6e-32 Score=309.85 Aligned_cols=293 Identities=14% Similarity=0.171 Sum_probs=231.9
Q ss_pred eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEee
Q 001287 69 GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1107)
Q Consensus 69 ~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d 147 (1107)
...+.+|..+|.+++|+|++.+|+|++.|++|+|||..++.....+ .+...|.+++|+|++.++++|+.|+.+++|++.
T Consensus 57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~ 136 (354)
T 2pbi_B 57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLT 136 (354)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECC
T ss_pred EEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEe
Confidence 3456789999999999999999999999999999999998777666 466789999999999999999999999999986
Q ss_pred cCCCce-eecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEE-EeCCccccccc
Q 001287 148 ADEGKL-FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKD 225 (1107)
Q Consensus 148 ~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~-~~g~~~~~~~~ 225 (1107)
...... ......+..|. ..|.++.|+| ++.+|++++.||+|++||+.+++.+. +.+|
T Consensus 137 ~~~~~~~~~~~~~~~~h~------------~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h------- 195 (354)
T 2pbi_B 137 FDKNENMAAKKKSVAMHT------------NYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQSFHGH------- 195 (354)
T ss_dssp CCTTCCSGGGCEEEEECS------------SCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECC-------
T ss_pred ccccccccccceeeeccC------------CcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCC-------
Confidence 432111 11112244444 7899999988 57789999999999999999987654 4456
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCceeEEEeecC--CCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeeccc
Q 001287 226 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS--SGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSS 303 (1107)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp--dg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~ 303 (1107)
...|.+++|. | +|.+|++|+.||.|++||+.++.. +.
T Consensus 196 -----------------------~~~v~~~~~~-~~~~g~~l~sgs~Dg~v~~wd~~~~~~-----------~~------ 234 (354)
T 2pbi_B 196 -----------------------GADVLCLDLA-PSETGNTFVSGGCDKKAMVWDMRSGQC-----------VQ------ 234 (354)
T ss_dssp -----------------------SSCEEEEEEC-CCSSCCEEEEEETTSCEEEEETTTCCE-----------EE------
T ss_pred -----------------------CCCeEEEEEE-eCCCCCEEEEEeCCCeEEEEECCCCcE-----------EE------
Confidence 6789999875 5 578999999999999999865410 00
Q ss_pred ccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCC
Q 001287 304 AERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGAT 383 (1107)
Q Consensus 304 ~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~ 383 (1107)
.+ .+
T Consensus 235 --------~~-------------------~~------------------------------------------------- 238 (354)
T 2pbi_B 235 --------AF-------------------ET------------------------------------------------- 238 (354)
T ss_dssp --------EE-------------------CC-------------------------------------------------
T ss_pred --------Ee-------------------cC-------------------------------------------------
Confidence 00 00
Q ss_pred CCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhcc
Q 001287 384 VGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTK 463 (1107)
Q Consensus 384 ~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (1107)
|.
T Consensus 239 -------------------------------------------------h~----------------------------- 240 (354)
T 2pbi_B 239 -------------------------------------------------HE----------------------------- 240 (354)
T ss_dssp -------------------------------------------------CS-----------------------------
T ss_pred -------------------------------------------------CC-----------------------------
Confidence 00
Q ss_pred ccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEE
Q 001287 464 LHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLS 543 (1107)
Q Consensus 464 ~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~ 543 (1107)
..+..++++|++++|++|+.||+|++||+........+ ....+...+++++
T Consensus 241 --------------------~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~---------~~~~~~~~~~~~~ 291 (354)
T 2pbi_B 241 --------------------SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIY---------SKESIIFGASSVD 291 (354)
T ss_dssp --------------------SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE---------CCTTCCSCEEEEE
T ss_pred --------------------CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE---------cCCCcccceeEEE
Confidence 01112256677789999999999999999877643211 1123345799999
Q ss_pred EEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeC
Q 001287 544 FCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFE 623 (1107)
Q Consensus 544 fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~ 623 (1107)
|+|++++|++|+.||.|+||++... .++..+.+|...|++++|+|++++||+|+.
T Consensus 292 ~s~~g~~l~~g~~d~~i~vwd~~~~-------------------------~~~~~l~~h~~~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 292 FSLSGRLLFAGYNDYTINVWDVLKG-------------------------SRVSILFGHENRVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTC-------------------------SEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred EeCCCCEEEEEECCCcEEEEECCCC-------------------------ceEEEEECCCCcEEEEEECCCCCEEEEEcC
Confidence 9999999999999999999998664 245677899999999999999999999999
Q ss_pred CCeEEEEE
Q 001287 624 CGRVAVLD 631 (1107)
Q Consensus 624 dg~V~iwd 631 (1107)
||+|+||+
T Consensus 347 D~~v~vW~ 354 (354)
T 2pbi_B 347 DHTLRVWA 354 (354)
T ss_dssp TSEEEEEC
T ss_pred CCCEEecC
Confidence 99999996
No 28
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=7.9e-32 Score=309.22 Aligned_cols=203 Identities=14% Similarity=0.189 Sum_probs=174.1
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCc-ceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCe
Q 001287 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1107)
Q Consensus 31 ~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~-~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~ 109 (1107)
..||...|.+++|+|++++||+|+.||.|+||+.... .......|...|.+++|+|++.+|++++.|+.|++|++....
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~ 139 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDK 139 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCT
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccc
Confidence 4599999999999999999999999999999998544 444566788899999999999999999999999999986541
Q ss_pred -------eeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEE
Q 001287 110 -------LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1107)
Q Consensus 110 -------~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v 182 (1107)
......|...|.+++|++++.+|++|+.||+|++|++.. +++.. .+.+|. ..|.++
T Consensus 140 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~--~~~~~---~~~~h~------------~~v~~~ 202 (354)
T 2pbi_B 140 NENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVES--GQLLQ---SFHGHG------------ADVLCL 202 (354)
T ss_dssp TCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTT--CCEEE---EEECCS------------SCEEEE
T ss_pred cccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCC--CeEEE---EEcCCC------------CCeEEE
Confidence 222336889999999999999999999999999999864 44543 366665 789999
Q ss_pred EcccCCCCCEEEEEECCCeEEEEEccCCEEEEE-eCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCC
Q 001287 183 LPHPNSSGNRVLIAYENALVILWDVSEAQIIFV-GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS 261 (1107)
Q Consensus 183 ~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spd 261 (1107)
.|+|..++.+|++|+.||.|++||+.+++.+.. .+| ...|++++|. |+
T Consensus 203 ~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h------------------------------~~~v~~v~~~-p~ 251 (354)
T 2pbi_B 203 DLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETH------------------------------ESDVNSVRYY-PS 251 (354)
T ss_dssp EECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCC------------------------------SSCEEEEEEC-TT
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC------------------------------CCCeEEEEEe-CC
Confidence 999976788899999999999999999877553 345 7789999986 99
Q ss_pred CCEEEEEEcCCcEEEEeCCC
Q 001287 262 GSILAVGYIDGDILLWNTST 281 (1107)
Q Consensus 262 g~~l~sg~~dG~I~lWd~~~ 281 (1107)
+..|++|+.||+|++||+..
T Consensus 252 ~~~l~s~s~D~~v~lwd~~~ 271 (354)
T 2pbi_B 252 GDAFASGSDDATCRLYDLRA 271 (354)
T ss_dssp SSEEEEEETTSCEEEEETTT
T ss_pred CCEEEEEeCCCeEEEEECCC
Confidence 99999999999999999864
No 29
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1e-31 Score=301.38 Aligned_cols=204 Identities=13% Similarity=0.212 Sum_probs=172.1
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcc-eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCee
Q 001287 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL 110 (1107)
Q Consensus 32 ~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~ 110 (1107)
.||...|.+++|+|++++||+|+.||.|+||+..... ...+..|..+|.+++|++++.+|++++.|++|++||+.+++.
T Consensus 10 ~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~ 89 (304)
T 2ynn_A 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK 89 (304)
T ss_dssp EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE
T ss_pred cCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcE
Confidence 4788999999999999999999999999999996554 446678999999999999999999999999999999999988
Q ss_pred eeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCC
Q 001287 111 ACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1107)
Q Consensus 111 ~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~ 189 (1107)
+..+ .|...|++++|+|++++|++|+.||+|++|++.... .+. ..+.+|. ..|.+++|+|. +
T Consensus 90 ~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-~~~---~~~~~h~------------~~v~~v~~~p~-~ 152 (304)
T 2ynn_A 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-ALE---QTFEGHE------------HFVMCVAFNPK-D 152 (304)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT-EEE---EEECCCC------------SCEEEEEECTT-C
T ss_pred EEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc-chh---hhhcccC------------CcEEEEEECCC-C
Confidence 7766 688999999999999999999999999999987521 222 2356665 78999999986 5
Q ss_pred CCEEEEEECCCeEEEEEccCCEEEE-E-eCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeec-CCCCEEE
Q 001287 190 GNRVLIAYENALVILWDVSEAQIIF-V-GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS-SSGSILA 266 (1107)
Q Consensus 190 ~~~ll~~~~dg~V~vwdl~~~~~~~-~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~s-pdg~~l~ 266 (1107)
+.+|++|+.||.|++||+....... . .+| ...|..++|.. +++.+|+
T Consensus 153 ~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~------------------------------~~~v~~~~~~~~~~~~~l~ 202 (304)
T 2ynn_A 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ------------------------------ERGVNYVDYYPLPDKPYMI 202 (304)
T ss_dssp TTEEEEEETTSEEEEEETTCSSCSEEEECCC------------------------------TTCEEEEEECCSTTCCEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCCccceeccCC------------------------------cCcEEEEEEEEcCCCCEEE
Confidence 6779999999999999997764322 2 122 55688888752 4788999
Q ss_pred EEEcCCcEEEEeCCCC
Q 001287 267 VGYIDGDILLWNTSTT 282 (1107)
Q Consensus 267 sg~~dG~I~lWd~~~~ 282 (1107)
+|+.||+|++||+.++
T Consensus 203 s~s~D~~i~iWd~~~~ 218 (304)
T 2ynn_A 203 TASDDLTIKIWDYQTK 218 (304)
T ss_dssp EEETTSEEEEEETTTT
T ss_pred EEcCCCeEEEEeCCCC
Confidence 9999999999998643
No 30
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.6e-31 Score=303.77 Aligned_cols=313 Identities=15% Similarity=0.198 Sum_probs=229.9
Q ss_pred eeCCCCC-CEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeee----eccCCCeEEEEEecCCCEEEEEcCCCcEEEEE
Q 001287 71 LISPSQL-PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACC----LKWESNITAFSVISGSHFMYIGDENGLMSVIK 145 (1107)
Q Consensus 71 ~~~~h~~-~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~----~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~ 145 (1107)
.+.+|.. +|.+|+|+|++.+|++++.|++|+|||+.++..... ..|...|++++|+|++++|++|+.|++|++|+
T Consensus 10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~ 89 (345)
T 3fm0_A 10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK 89 (345)
T ss_dssp EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEE
Confidence 4567877 999999999999999999999999999998864322 25888999999999999999999999999999
Q ss_pred eecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEE---E-EEeCCccc
Q 001287 146 YDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI---I-FVGGGKDL 221 (1107)
Q Consensus 146 ~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~---~-~~~g~~~~ 221 (1107)
++....... ..+.+|. ..|.+++|+| ++++|++++.|+.|++||+.++.. + ...+|
T Consensus 90 ~~~~~~~~~---~~~~~h~------------~~v~~v~~sp--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h--- 149 (345)
T 3fm0_A 90 KNQDDFECV---TTLEGHE------------NEVKSVAWAP--SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH--- 149 (345)
T ss_dssp ECCC-EEEE---EEECCCS------------SCEEEEEECT--TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC---
T ss_pred ccCCCeEEE---EEccCCC------------CCceEEEEeC--CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc---
Confidence 875433333 3366666 8899999998 688899999999999999976531 2 22333
Q ss_pred cccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeec
Q 001287 222 QLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLEL 301 (1107)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~ 301 (1107)
...|++++|. |++.+|++|+.||.|++||..+.
T Consensus 150 ---------------------------~~~v~~~~~~-p~~~~l~s~s~d~~i~~w~~~~~------------------- 182 (345)
T 3fm0_A 150 ---------------------------TQDVKHVVWH-PSQELLASASYDDTVKLYREEED------------------- 182 (345)
T ss_dssp ---------------------------CSCEEEEEEC-SSSSCEEEEETTSCEEEEEEETT-------------------
T ss_pred ---------------------------CCCeEEEEEC-CCCCEEEEEeCCCcEEEEEecCC-------------------
Confidence 5667778875 77777888888887777775321
Q ss_pred ccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCC
Q 001287 302 SSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAG 381 (1107)
Q Consensus 302 ~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~ 381 (1107)
T Consensus 183 -------------------------------------------------------------------------------- 182 (345)
T 3fm0_A 183 -------------------------------------------------------------------------------- 182 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhh
Q 001287 382 ATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATF 461 (1107)
Q Consensus 382 ~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~ 461 (1107)
T Consensus 183 -------------------------------------------------------------------------------- 182 (345)
T 3fm0_A 183 -------------------------------------------------------------------------------- 182 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEE
Q 001287 462 TKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVST 541 (1107)
Q Consensus 462 ~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~ 541 (1107)
..... ..+.+|...|++
T Consensus 183 ------------------------------------------------------~~~~~---------~~~~~h~~~v~~ 199 (345)
T 3fm0_A 183 ------------------------------------------------------DWVCC---------ATLEGHESTVWS 199 (345)
T ss_dssp ------------------------------------------------------EEEEE---------EEECCCSSCEEE
T ss_pred ------------------------------------------------------CEEEE---------EEecCCCCceEE
Confidence 10000 113456667778
Q ss_pred EEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEee-cCcCEEEEEEcCCCCEEEE
Q 001287 542 LSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSL-VNSPVRALQFTSSGAKLAV 620 (1107)
Q Consensus 542 l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-h~~~Vt~la~sp~~~~la~ 620 (1107)
|+|+|++++|++++.||+|+||+......... +..........++..+.+ |...|.+++|+|++.+||+
T Consensus 200 l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s 269 (345)
T 3fm0_A 200 LAFDPSGQRLASCSDDRTVRIWRQYLPGNEQG----------VACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALAT 269 (345)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEEECTTCTTC----------CCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEE
T ss_pred EEECCCCCEEEEEeCCCeEEEeccccCCCCcc----------ceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEE
Confidence 88888888888888888888887643221100 000000112234555555 8999999999999999999
Q ss_pred EeCCCeEEEEEcCCCe------EEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCc-cEEEEEcCCce
Q 001287 621 GFECGRVAVLDMNLLS------VLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAE-EVIIVLFKDAK 693 (1107)
Q Consensus 621 Gs~dg~V~iwd~~~~~------~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~-~~L~s~s~Dg~ 693 (1107)
|+.|+.|++|+..... ..+..+...+|...|.+++|+ |++ .+|++++.||+
T Consensus 270 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~----------------------p~~~~~laS~s~Dg~ 327 (345)
T 3fm0_A 270 ACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWN----------------------PKEPGLLASCSDDGE 327 (345)
T ss_dssp EETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEEC----------------------SSSTTEEEEEETTSC
T ss_pred EeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEe----------------------CCCceEEEEcCCCCc
Confidence 9999999999986542 222334557899999999999 434 58999999999
Q ss_pred EEEEeCCCccee
Q 001287 694 ISIVGGSSENMI 705 (1107)
Q Consensus 694 v~v~d~~~g~~i 705 (1107)
|++|+..+++.+
T Consensus 328 v~~W~~~~~~~~ 339 (345)
T 3fm0_A 328 VAFWKYQRPEGL 339 (345)
T ss_dssp EEEEEECC----
T ss_pred EEEEEecCCCCc
Confidence 999999876644
No 31
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-33 Score=330.26 Aligned_cols=364 Identities=10% Similarity=0.129 Sum_probs=261.0
Q ss_pred CCeEEEEEcCCCC-EEEEE----------ECCCcEEEEeCCCcc---eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEE
Q 001287 36 ATASILAFDHIQR-LLAIA----------TLDGRIKVIGGDGIE---GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQ 101 (1107)
Q Consensus 36 ~~i~~lafsp~~~-~LA~G----------s~dg~I~iw~~~~~~---~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~ 101 (1107)
..|.+++|+|+++ +||+| +.||.|+||+..... .+....|..+|.+++|+|++.+|++++.|+.|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 4688999999987 99999 889999999997654 445567999999999999999999999999999
Q ss_pred EEEcCC----Ceeeeee-ccCCCeEEEEEecC-CCEEEEEcCCCcEEEEEeecCCCceee-cceeecccccccccCCCCC
Q 001287 102 VWSLES----RSLACCL-KWESNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQ-LPYNISADALSEKAGFPLL 174 (1107)
Q Consensus 102 vWDl~s----~~~~~~~-~~~~~Vt~l~~~~~-~~~l~~g~~dg~V~vw~~d~~~~~l~~-~~~~i~~~~~~~~~~~~~~ 174 (1107)
+||+.+ ...+..+ .|...|++++|+|+ +++|++|+.||.|++|++......... .++.+. ....
T Consensus 93 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~---------~~~~ 163 (416)
T 2pm9_A 93 LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPG---------QSMS 163 (416)
T ss_dssp EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCC---------CSCC
T ss_pred EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccc---------cccC
Confidence 999988 3344444 68899999999998 899999999999999998754311000 001110 0012
Q ss_pred CCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeE
Q 001287 175 SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISA 254 (1107)
Q Consensus 175 ~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vts 254 (1107)
+...|.+++|+|. .+.+|++++.||.|++||+.+++.+......... ..+...|++
T Consensus 164 ~~~~v~~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-----------------------~~~~~~v~~ 219 (416)
T 2pm9_A 164 SVDEVISLAWNQS-LAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN-----------------------SGIKQQLSV 219 (416)
T ss_dssp SSCCCCEEEECSS-CTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS-----------------------SCCCCCEEE
T ss_pred CCCCeeEEEeCCC-CCcEEEEEcCCCCEEEEECCCCCcceEEeccccc-----------------------cccCCceEE
Confidence 2378999999984 3677999999999999999998876554320000 011567999
Q ss_pred EEeecCCC-CEEEEEEcCC---cEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEE
Q 001287 255 LCWASSSG-SILAVGYIDG---DILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLF 330 (1107)
Q Consensus 255 l~w~spdg-~~l~sg~~dG---~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~ll 330 (1107)
++|. |++ .+|++++.|| .|++||+.+..... .. ..
T Consensus 220 ~~~~-~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~----------~~------------------------~~------ 258 (416)
T 2pm9_A 220 VEWH-PKNSTRVATATGSDNDPSILIWDLRNANTPL----------QT------------------------LN------ 258 (416)
T ss_dssp EEEC-SSCTTEEEEEECCSSSCCCCEEETTSTTSCS----------BC------------------------CC------
T ss_pred EEEC-CCCCCEEEEEECCCCCceEEEEeCCCCCCCc----------EE------------------------ee------
Confidence 9986 887 6899999999 99999997541100 00 00
Q ss_pred EEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceee
Q 001287 331 VYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTT 410 (1107)
Q Consensus 331 v~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~ 410 (1107)
T Consensus 259 -------------------------------------------------------------------------------- 258 (416)
T 2pm9_A 259 -------------------------------------------------------------------------------- 258 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccc
Q 001287 411 LLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITK 490 (1107)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~ 490 (1107)
.++...+..++
T Consensus 259 ---------------------------------------------------------------------~~~~~~v~~~~ 269 (416)
T 2pm9_A 259 ---------------------------------------------------------------------QGHQKGILSLD 269 (416)
T ss_dssp ---------------------------------------------------------------------SCCSSCEEEEE
T ss_pred ---------------------------------------------------------------------cCccCceeEEE
Confidence 00000001124
Q ss_pred cCC-CCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCC-CeEEEeccCceEEEEEecCC
Q 001287 491 CHS-VDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN-SSLAVGNEFGLVYIYNLNGS 568 (1107)
Q Consensus 491 ~s~-~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~-~~Lasg~~dg~V~vw~~~~~ 568 (1107)
++| ++++|++|+.||+|++||+..+.+. ..+.+|...|++++|+|++ .+|++++.||.|+||++...
T Consensus 270 ~s~~~~~~l~s~~~dg~v~~wd~~~~~~~-----------~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 270 WCHQDEHLLLSSGRDNTVLLWNPESAEQL-----------SQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp ECSSCSSCEEEEESSSEEEEECSSSCCEE-----------EEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred eCCCCCCeEEEEeCCCCEEEeeCCCCccc-----------eeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 455 6678999999999999999987754 3466888999999999999 89999999999999999876
Q ss_pred CCCcccee------------eccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 001287 569 LDAKNFLF------------VLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLL 635 (1107)
Q Consensus 569 ~~~~~~~~------------~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~ 635 (1107)
.......- .... +.+....+...+.. .....|..+|++++|+|+|++||+|+.||.|+|||+.+.
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 339 TNTLDEQETETKQQESETDFWNNV-SREESKEKPSVFHL-QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CCSSCC-----------------------CCSCCCSSCC-CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred CCCcccccccccccCCcccccccc-cccccccccccccc-cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 43211100 0000 00000000001111 112237788999999999999999999999999999764
No 32
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.5e-31 Score=298.30 Aligned_cols=201 Identities=17% Similarity=0.233 Sum_probs=165.1
Q ss_pred ecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCc------ceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEE
Q 001287 31 HYGIPATASILAFDHIQ-RLLAIATLDGRIKVIGGDGI------EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVW 103 (1107)
Q Consensus 31 ~~G~~~~i~~lafsp~~-~~LA~Gs~dg~I~iw~~~~~------~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vW 103 (1107)
..||.+.|.+++|+|++ ++||+|+.||.|++|++... ....+.+|..+|.+++|++++.+|++++.|++|++|
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~w 92 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 45999999999999965 89999999999999998432 233567899999999999999999999999999999
Q ss_pred EcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEE
Q 001287 104 SLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1107)
Q Consensus 104 Dl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v 182 (1107)
|+.+++.+..+ .|...|++++|++++.++++|+.||+|++|++.. ... ..+.+|. ..|.++
T Consensus 93 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~---~~~---~~~~~h~------------~~v~~~ 154 (319)
T 3frx_A 93 DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG---QCL---ATLLGHN------------DWVSQV 154 (319)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS---CEE---EEECCCS------------SCEEEE
T ss_pred ECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CeE---EEEeccC------------CcEEEE
Confidence 99999888776 6889999999999999999999999999999852 333 2355665 789999
Q ss_pred EcccCC----CCCEEEEEECCCeEEEEEccCCEEEE-EeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEe
Q 001287 183 LPHPNS----SGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCW 257 (1107)
Q Consensus 183 ~f~P~~----~~~~ll~~~~dg~V~vwdl~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w 257 (1107)
.|+|.. ++..+++++.|+.|++||+.+.+... +.+| ...|++++|
T Consensus 155 ~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h------------------------------~~~v~~~~~ 204 (319)
T 3frx_A 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH------------------------------NSNINTLTA 204 (319)
T ss_dssp EECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCC------------------------------CSCEEEEEE
T ss_pred EEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCC------------------------------CCcEEEEEE
Confidence 998852 34568888889988999888776543 3444 567777886
Q ss_pred ecCCCCEEEEEEcCCcEEEEeCC
Q 001287 258 ASSSGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 258 ~spdg~~l~sg~~dG~I~lWd~~ 280 (1107)
. |+|.+|++|+.||.|++||+.
T Consensus 205 s-p~g~~l~s~~~dg~i~iwd~~ 226 (319)
T 3frx_A 205 S-PDGTLIASAGKDGEIMLWNLA 226 (319)
T ss_dssp C-TTSSEEEEEETTCEEEEEETT
T ss_pred c-CCCCEEEEEeCCCeEEEEECC
Confidence 4 778888888888888887764
No 33
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1e-31 Score=306.45 Aligned_cols=301 Identities=14% Similarity=0.188 Sum_probs=224.2
Q ss_pred EEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCC------------CeeeeeeccCCCeEEEEEe
Q 001287 59 IKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES------------RSLACCLKWESNITAFSVI 126 (1107)
Q Consensus 59 I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s------------~~~~~~~~~~~~Vt~l~~~ 126 (1107)
.+.|+++... ...|+..|.+++|+|||.+|++++ |+++++||... +.......+...|++++|+
T Consensus 16 ~r~w~~~~~~---~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 91 (344)
T 4gqb_B 16 AREWNLPPNA---PACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWV 91 (344)
T ss_dssp -------CCS---CSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEE
T ss_pred ccccCCCCCC---cccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEe
Confidence 3567664322 234677899999999999888887 77888887421 1122344567789999999
Q ss_pred cCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEE
Q 001287 127 SGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWD 206 (1107)
Q Consensus 127 ~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwd 206 (1107)
+++ .|++|+.||+|+||+++..+.... ..+...+|. +.|.+|+|+| ++++|++|+.||+|++||
T Consensus 92 ~d~-~l~~~s~dg~v~lWd~~~~~~~~~-~~~~~~~H~------------~~V~~v~~sp--dg~~l~sgs~d~~i~iwd 155 (344)
T 4gqb_B 92 GER-GILVASDSGAVELWELDENETLIV-SKFCKYEHD------------DIVSTVSVLS--SGTQAVSGSKDICIKVWD 155 (344)
T ss_dssp TTT-EEEEEETTSEEEEEEECTTSSCEE-EEEEEECCS------------SCEEEEEECT--TSSEEEEEETTSCEEEEE
T ss_pred CCC-eEEEEECCCEEEEEeccCCCceeE-eeccccCCC------------CCEEEEEECC--CCCEEEEEeCCCeEEEEE
Confidence 984 788999999999999986432222 123344565 8899999988 788999999999999999
Q ss_pred ccCCEEEE-EeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCC-CEEEEEEcCCcEEEEeCCCCCC
Q 001287 207 VSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG-SILAVGYIDGDILLWNTSTTAS 284 (1107)
Q Consensus 207 l~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg-~~l~sg~~dG~I~lWd~~~~~~ 284 (1107)
+.+++.+. +.+| ...|++++|. +++ ..|++|+.||+|++||+.+++
T Consensus 156 ~~~~~~~~~~~~h------------------------------~~~V~~~~~~-~~~~~~l~s~s~D~~v~iwd~~~~~- 203 (344)
T 4gqb_B 156 LAQQVVLSSYRAH------------------------------AAQVTCVAAS-PHKDSVFLSCSEDNRILLWDTRCPK- 203 (344)
T ss_dssp TTTTEEEEEECCC------------------------------SSCEEEEEEC-SSCTTEEEEEETTSCEEEEETTSSS-
T ss_pred CCCCcEEEEEcCc------------------------------CCceEEEEec-CCCCCceeeeccccccccccccccc-
Confidence 99988765 4455 6788889875 766 467888888888888875331
Q ss_pred CCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeee
Q 001287 285 TKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVD 364 (1107)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~ 364 (1107)
T Consensus 204 -------------------------------------------------------------------------------- 203 (344)
T 4gqb_B 204 -------------------------------------------------------------------------------- 203 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEe
Q 001287 365 ITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFML 444 (1107)
Q Consensus 365 l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~ 444 (1107)
T Consensus 204 -------------------------------------------------------------------------------- 203 (344)
T 4gqb_B 204 -------------------------------------------------------------------------------- 203 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeec
Q 001287 445 LPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALD 524 (1107)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~ 524 (1107)
....
T Consensus 204 ------------------------------------------------------------------------~~~~---- 207 (344)
T 4gqb_B 204 ------------------------------------------------------------------------PASQ---- 207 (344)
T ss_dssp ------------------------------------------------------------------------CEEE----
T ss_pred ------------------------------------------------------------------------eeee----
Confidence 0000
Q ss_pred cceeeeeecCCCCCeEEEEEEeC-CCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecC
Q 001287 525 AEVQGIEVAGSRAPVSTLSFCFI-NSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVN 603 (1107)
Q Consensus 525 ~~~~~~~l~~h~~~Vt~l~fspd-~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~ 603 (1107)
.....|...+++++|+|+ +++|++|+.||.|+||++... +++..+.+|.
T Consensus 208 -----~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~-------------------------~~~~~~~~h~ 257 (344)
T 4gqb_B 208 -----IGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST-------------------------SCVLSSAVHS 257 (344)
T ss_dssp -----CC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---------------------------CCEEEECCS
T ss_pred -----eecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC-------------------------cEEEEEcCCC
Confidence 000122235788999985 567899999999999999765 3567788999
Q ss_pred cCEEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCc
Q 001287 604 SPVRALQFTSSG-AKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAE 682 (1107)
Q Consensus 604 ~~Vt~la~sp~~-~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~ 682 (1107)
..|++++|+|++ ++||+|+.||+|+|||+.+++++ .+.+|...|.+++|+ |++
T Consensus 258 ~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~----~~~~H~~~V~~v~~s----------------------p~~ 311 (344)
T 4gqb_B 258 QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF----RSQAHRDFVRDATWS----------------------PLN 311 (344)
T ss_dssp SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE----EECCCSSCEEEEEEC----------------------SSS
T ss_pred CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE----EEcCCCCCEEEEEEe----------------------CCC
Confidence 999999999998 58999999999999999999876 357899999999999 334
Q ss_pred -cEEEEEcCCceEEEEeCCCcc
Q 001287 683 -EVIIVLFKDAKISIVGGSSEN 703 (1107)
Q Consensus 683 -~~L~s~s~Dg~v~v~d~~~g~ 703 (1107)
.+|++++.|++|++|+..+..
T Consensus 312 ~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 312 HSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp TTEEEEEETTSCEEEEECCC--
T ss_pred CeEEEEEcCCCeEEEEECCCCC
Confidence 467899999999999987643
No 34
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-33 Score=326.03 Aligned_cols=340 Identities=14% Similarity=0.220 Sum_probs=255.0
Q ss_pred CCEEEEEEEeCCC-EEEEE----------eCCCcEEEEEcCCCe---eeeeeccCCCeEEEEEecCCCEEEEEcCCCcEE
Q 001287 77 LPYKNLEFLQNQG-FLISI----------TNDNEIQVWSLESRS---LACCLKWESNITAFSVISGSHFMYIGDENGLMS 142 (1107)
Q Consensus 77 ~~V~~l~fs~d~~-~L~S~----------s~d~~I~vWDl~s~~---~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~ 142 (1107)
.+|.+++|+|++. +|+++ +.|+.|+|||+.++. .+..+.+...|++++|+|++++|++|+.||.|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 4688999999987 88888 889999999999885 555667889999999999999999999999999
Q ss_pred EEEeecCC--CceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCE------EEE
Q 001287 143 VIKYDADE--GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ------IIF 214 (1107)
Q Consensus 143 vw~~d~~~--~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~------~~~ 214 (1107)
+|+++... .... ..+..|. ..|.+++|+|. .+.+|++++.||.|++||+.+++ ...
T Consensus 93 vw~~~~~~~~~~~~---~~~~~h~------------~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 156 (416)
T 2pm9_A 93 LYSTNEANNAINSM---ARFSNHS------------SSVKTVKFNAK-QDNVLASGGNNGEIFIWDMNKCTESPSNYTPL 156 (416)
T ss_dssp EECCSSTTSCCCEE---EECCCSS------------SCCCEEEECSS-STTBEEEECSSSCEEBCBTTTTSSCTTTCCCB
T ss_pred Eeecccccccccch---hhccCCc------------cceEEEEEcCC-CCCEEEEEcCCCeEEEEECCCCcccccccccc
Confidence 99987521 1222 2355555 78999999984 37779999999999999998865 111
Q ss_pred EeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCC-CCEEEEEEcCCcEEEEeCCCCCCCCCccCCCC
Q 001287 215 VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS-GSILAVGYIDGDILLWNTSTTASTKGQQTGSR 293 (1107)
Q Consensus 215 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spd-g~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~ 293 (1107)
... ....+...|++++|. |+ +..|++++.||.|++||+.+...
T Consensus 157 ~~~--------------------------~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~--------- 200 (416)
T 2pm9_A 157 TPG--------------------------QSMSSVDEVISLAWN-QSLAHVFASAGSSNFASIWDLKAKKE--------- 200 (416)
T ss_dssp CCC--------------------------CSCCSSCCCCEEEEC-SSCTTEEEEESSSSCEEEEETTTTEE---------
T ss_pred ccc--------------------------cccCCCCCeeEEEeC-CCCCcEEEEEcCCCCEEEEECCCCCc---------
Confidence 110 001126789999986 88 78999999999999999975410
Q ss_pred CceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccce
Q 001287 294 NNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFAD 373 (1107)
Q Consensus 294 ~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d 373 (1107)
+..+... ..
T Consensus 201 --~~~~~~~--------------------~~------------------------------------------------- 209 (416)
T 2pm9_A 201 --VIHLSYT--------------------SP------------------------------------------------- 209 (416)
T ss_dssp --EEEECCC--------------------CC-------------------------------------------------
T ss_pred --ceEEecc--------------------cc-------------------------------------------------
Confidence 0000000 00
Q ss_pred EEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCch
Q 001287 374 MILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSK 453 (1107)
Q Consensus 374 ~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~ 453 (1107)
T Consensus 210 -------------------------------------------------------------------------------- 209 (416)
T 2pm9_A 210 -------------------------------------------------------------------------------- 209 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCC-cEEEEEecCC---cEEEEeCCCCc-eeEEEeecccee
Q 001287 454 GLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVD-RVYLAGYHDG---SVRIWDATYPV-FKLICALDAEVQ 528 (1107)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~-~~laTgs~Dg---tIriWd~~~~~-l~~~~~l~~~~~ 528 (1107)
..++...+..++++|++ .++++++.|+ .|++||+..+. +.
T Consensus 210 -------------------------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~---------- 254 (416)
T 2pm9_A 210 -------------------------NSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPL---------- 254 (416)
T ss_dssp -------------------------SSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCS----------
T ss_pred -------------------------ccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCc----------
Confidence 00000011122455654 5899999999 99999998753 22
Q ss_pred eeeec-CCCCCeEEEEEEe-CCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCE
Q 001287 529 GIEVA-GSRAPVSTLSFCF-INSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPV 606 (1107)
Q Consensus 529 ~~~l~-~h~~~Vt~l~fsp-d~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~V 606 (1107)
..+. +|...|++++|+| ++++|++++.||.|++|++... +++..+..|...|
T Consensus 255 -~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~-------------------------~~~~~~~~~~~~v 308 (416)
T 2pm9_A 255 -QTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA-------------------------EQLSQFPARGNWC 308 (416)
T ss_dssp -BCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC-------------------------CEEEEEECSSSCC
T ss_pred -EEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC-------------------------ccceeecCCCCce
Confidence 2355 8999999999999 9999999999999999998775 3567788999999
Q ss_pred EEEEEcCCC-CEEEEEeCCCeEEEEEcCCCeEEEEee--------------------------------cCCCCCCceEE
Q 001287 607 RALQFTSSG-AKLAVGFECGRVAVLDMNLLSVLFFTD--------------------------------DISGSSSPIIS 653 (1107)
Q Consensus 607 t~la~sp~~-~~la~Gs~dg~V~iwd~~~~~~~~~~~--------------------------------~~~~h~~~V~~ 653 (1107)
++++|+|++ .+|++|+.||.|+|||+.......... ....|..+|.+
T Consensus 309 ~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (416)
T 2pm9_A 309 FKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPA 388 (416)
T ss_dssp CCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCC
T ss_pred EEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccc
Confidence 999999999 899999999999999998765321000 00013444445
Q ss_pred EEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCc
Q 001287 654 MTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSE 702 (1107)
Q Consensus 654 l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g 702 (1107)
++|+ |++.+|++++.|+.|.+||.++.
T Consensus 389 ~~~s----------------------~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 389 AHWA----------------------FGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CEEE----------------------TTTEEECBCTTSSCBCCBCCCCC
T ss_pred eEEe----------------------eCCeEEEEeCCCCeEEEEEeccC
Confidence 5555 78999999999999999998764
No 35
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.8e-32 Score=312.15 Aligned_cols=320 Identities=17% Similarity=0.198 Sum_probs=210.6
Q ss_pred EEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcC------CCcEEEEEeecCCCce
Q 001287 80 KNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDE------NGLMSVIKYDADEGKL 153 (1107)
Q Consensus 80 ~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~------dg~V~vw~~d~~~~~l 153 (1107)
..+.+.++..+ ++.+.+.....|++....+ ..|+..|++++|+|++++|++|+. ||.|++|+... +..
T Consensus 9 sg~d~g~~~~~-~~~~g~~~~~~w~~p~~~p---~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~--~~~ 82 (357)
T 4g56_B 9 SGVDLGTENLY-FQSNGSSKGSAWGRPVTAP---ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPE--GAP 82 (357)
T ss_dssp -----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC-----
T ss_pred cCCCCCccceE-EecCCCccccccCCCCCCc---ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCC--CCc
Confidence 44555555433 4445577789999876543 258889999999999999999997 56666665432 221
Q ss_pred eec-ceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEE-----eCCccccccccc
Q 001287 154 FQL-PYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV-----GGGKDLQLKDGV 227 (1107)
Q Consensus 154 ~~~-~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~-----~g~~~~~~~~~~ 227 (1107)
... ......|. ..|.+++|+| ++. +++++.||.|+|||+.+++.... .+|
T Consensus 83 ~~~~~~~~~~~~------------~~V~~~~~s~--d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h--------- 138 (357)
T 4g56_B 83 NESLCTAGVQTE------------AGVTDVAWVS--EKG-ILVASDSGAVELWEILEKESLLVNKFAKYEH--------- 138 (357)
T ss_dssp CGGGCSEEEECS------------SCEEEEEEET--TTE-EEEEETTSCEEEC--------CCCCEEECCC---------
T ss_pred ceeEecccCCCC------------CCEEEEEEcC--CCC-EEEEECCCEEEEeeccccceeEEEeeccCCC---------
Confidence 110 01122232 7799999998 454 88899999999999988765322 233
Q ss_pred cCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCc
Q 001287 228 VDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERR 307 (1107)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 307 (1107)
...|++++|. |+|++|++|+.||.|++||+.+++. +.
T Consensus 139 ---------------------~~~V~~v~~s-pdg~~l~sgs~dg~v~iwd~~~~~~-----------~~---------- 175 (357)
T 4g56_B 139 ---------------------DDIVKTLSVF-SDGTQAVSGGKDFSVKVWDLSQKAV-----------LK---------- 175 (357)
T ss_dssp ---------------------SSCEEEEEEC-SSSSEEEEEETTSCEEEEETTTTEE-----------EE----------
T ss_pred ---------------------CCCEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCcE-----------EE----------
Confidence 7789999985 9999999999999999999875410 00
Q ss_pred cceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCC
Q 001287 308 LPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNH 387 (1107)
Q Consensus 308 ~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~ 387 (1107)
.+ .+
T Consensus 176 ----~~-------------------~~----------------------------------------------------- 179 (357)
T 4g56_B 176 ----SY-------------------NA----------------------------------------------------- 179 (357)
T ss_dssp ----EE-------------------CC-----------------------------------------------------
T ss_pred ----EE-------------------cC-----------------------------------------------------
Confidence 00 00
Q ss_pred cceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCC
Q 001287 388 KADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSS 467 (1107)
Q Consensus 388 ~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (1107)
|...+++
T Consensus 180 ---------------------------------------------h~~~v~~---------------------------- 186 (357)
T 4g56_B 180 ---------------------------------------------HSSEVNC---------------------------- 186 (357)
T ss_dssp ---------------------------------------------CSSCEEE----------------------------
T ss_pred ---------------------------------------------CCCCEEE----------------------------
Confidence 0001111
Q ss_pred CCccCCccccccCCCCCCCCccccCCCC-cEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEe
Q 001287 468 HTQAGHIKWPLSGGVPSPVPITKCHSVD-RVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF 546 (1107)
Q Consensus 468 ~~~~~~~~wp~~gg~~~~~~~~~~s~~~-~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fsp 546 (1107)
+++++++ .++++++.||+|++||+..+.... ......|...|++++|+|
T Consensus 187 ---------------------v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~---------~~~~~~~~~~v~~v~~sp 236 (357)
T 4g56_B 187 ---------------------VAACPGKDTIFLSCGEDGRILLWDTRKPKPAT---------RIDFCASDTIPTSVTWHP 236 (357)
T ss_dssp ---------------------EEECTTCSSCEEEEETTSCEEECCTTSSSCBC---------BCCCTTCCSCEEEEEECT
T ss_pred ---------------------EEEccCCCceeeeeccCCceEEEECCCCceee---------eeeeccccccccchhhhh
Confidence 1233333 378999999999999998776431 123456778899999999
Q ss_pred CC-CeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCC-CEEEEEeCC
Q 001287 547 IN-SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG-AKLAVGFEC 624 (1107)
Q Consensus 547 d~-~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~-~~la~Gs~d 624 (1107)
++ .+|++|+.|+.|++|++... .++..+..|...|++|+|+|++ ++||+|+.|
T Consensus 237 ~~~~~la~g~~d~~i~~wd~~~~-------------------------~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D 291 (357)
T 4g56_B 237 EKDDTFACGDETGNVSLVNIKNP-------------------------DSAQTSAVHSQNITGLAYSYHSSPFLASISED 291 (357)
T ss_dssp TSTTEEEEEESSSCEEEEESSCG-------------------------GGCEEECCCSSCEEEEEECSSSSCCEEEEETT
T ss_pred cccceEEEeecccceeEEECCCC-------------------------cEeEEEeccceeEEEEEEcCCCCCEEEEEeCC
Confidence 75 67899999999999998765 2456778999999999999987 689999999
Q ss_pred CeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCC
Q 001287 625 GRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 701 (1107)
Q Consensus 625 g~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~ 701 (1107)
|+|+|||+++++++. ..+|..+|++|+|++. ++.+|++++.||+|++||..+
T Consensus 292 ~~i~iwd~~~~~~~~----~~~H~~~V~~vafsP~---------------------d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 292 CTVAVLDADFSEVFR----DLSHRDFVTGVAWSPL---------------------DHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp SCEEEECTTSCEEEE----ECCCSSCEEEEEECSS---------------------STTEEEEEETTSCEEEEECC-
T ss_pred CEEEEEECCCCcEeE----ECCCCCCEEEEEEeCC---------------------CCCEEEEEcCCCeEEEEECCC
Confidence 999999999998772 2479999999999931 467899999999999999754
No 36
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.1e-31 Score=315.07 Aligned_cols=354 Identities=13% Similarity=0.098 Sum_probs=252.8
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-
Q 001287 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL- 114 (1107)
Q Consensus 36 ~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~- 114 (1107)
..+++++|+|++++||+|+.||.|++|+....+..........+....|++++.+|++++.|+.|++||+.+++....+
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 136 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ 136 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Confidence 3455899999999999999999999999976654433333345556678999999999999999999999999988876
Q ss_pred ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEE
Q 001287 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1107)
Q Consensus 115 ~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll 194 (1107)
.|.+.|++++|+|++++|++|+.||.|++|++.. ++.. ..+.+|. ..|.+++|+| ++.+|+
T Consensus 137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~--~~~~---~~~~~h~------------~~v~~~~~~~--~~~~l~ 197 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD--GSNP---RTLIGHR------------ATVTDIAIID--RGRNVL 197 (420)
T ss_dssp SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--CCCC---EEEECCS------------SCEEEEEEET--TTTEEE
T ss_pred cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCC--CcCc---eEEcCCC------------CcEEEEEEcC--CCCEEE
Confidence 7889999999999999999999999999999875 3333 2255665 8899999998 688899
Q ss_pred EEECCCeEEEEEccCCEEEEEeC-Cc---cccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEc
Q 001287 195 IAYENALVILWDVSEAQIIFVGG-GK---DLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI 270 (1107)
Q Consensus 195 ~~~~dg~V~vwdl~~~~~~~~~g-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~ 270 (1107)
+++.||.|++||+.+++.+.... +. ......... +.. ...........+++++|. |+|++|++|+.
T Consensus 198 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~-------~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~ 267 (420)
T 3vl1_A 198 SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALF--VGT-------DRQLHEISTSKKNNLEFG-TYGKYVIAGHV 267 (420)
T ss_dssp EEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEE--ECC-------CSSCGGGCCCCCCTTCSS-CTTEEEEEEET
T ss_pred EEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEe--cCC-------cceeeecccCcccceEEc-CCCCEEEEEcC
Confidence 99999999999999988765542 20 000000000 000 000000114567777764 89999999999
Q ss_pred CCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCc
Q 001287 271 DGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEW 350 (1107)
Q Consensus 271 dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~ 350 (1107)
||.|++||+.+... +. .+
T Consensus 268 dg~i~i~d~~~~~~-----------~~--------------~~------------------------------------- 285 (420)
T 3vl1_A 268 SGVITVHNVFSKEQ-----------TI--------------QL------------------------------------- 285 (420)
T ss_dssp TSCEEEEETTTCCE-----------EE--------------EE-------------------------------------
T ss_pred CCeEEEEECCCCce-----------eE--------------Ec-------------------------------------
Confidence 99999999864310 00 00
Q ss_pred cccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCccc
Q 001287 351 SSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVI 430 (1107)
Q Consensus 351 ~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (1107)
T Consensus 286 -------------------------------------------------------------------------------- 285 (420)
T 3vl1_A 286 -------------------------------------------------------------------------------- 285 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCc-EEEEEecCCcEEE
Q 001287 431 PISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDR-VYLAGYHDGSVRI 509 (1107)
Q Consensus 431 ~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~-~laTgs~DgtIri 509 (1107)
..++...+..++++|++. +|++|+.||.|++
T Consensus 286 ------------------------------------------------~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~v 317 (420)
T 3vl1_A 286 ------------------------------------------------PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQ 317 (420)
T ss_dssp ------------------------------------------------CCTTSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred ------------------------------------------------ccccCCCceeEEEeCCCCCEEEEEeCCCeEEE
Confidence 000000111224566666 9999999999999
Q ss_pred EeCCCCceeEEEeeccceeeeeec-CCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecc
Q 001287 510 WDATYPVFKLICALDAEVQGIEVA-GSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALP 588 (1107)
Q Consensus 510 Wd~~~~~l~~~~~l~~~~~~~~l~-~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (1107)
||+..+.... ..+. +|...|+++.| +++++|++++.||.|++|++......... ...
T Consensus 318 wd~~~~~~~~----------~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~----------~~~- 375 (420)
T 3vl1_A 318 WDLRSPECPV----------GEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPA----------IEF- 375 (420)
T ss_dssp EETTCTTSCS----------EEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCE----------ECT-
T ss_pred EEcCCCcCch----------hhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccc----------eec-
Confidence 9998765210 1122 47778998855 58889999999999999999874221000 000
Q ss_pred cCCcceeEEEEeecCcCEEEEEEcCCCC---EEEEEeCCCeEEEEEcCCC
Q 001287 589 EGKISLCRAVFSLVNSPVRALQFTSSGA---KLAVGFECGRVAVLDMNLL 635 (1107)
Q Consensus 589 ~~~g~~~~~~~~~h~~~Vt~la~sp~~~---~la~Gs~dg~V~iwd~~~~ 635 (1107)
.....+..|...|++++|+|+++ .+++.+.+|.+.+|++..+
T Consensus 376 -----~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~~ 420 (420)
T 3vl1_A 376 -----ETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSNP 420 (420)
T ss_dssp -----TSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC-
T ss_pred -----cCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccCC
Confidence 01233567899999999999998 5555566789999998753
No 37
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.9e-30 Score=291.95 Aligned_cols=204 Identities=18% Similarity=0.285 Sum_probs=175.7
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCc-ceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCe
Q 001287 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1107)
Q Consensus 31 ~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~-~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~ 109 (1107)
..||...|++++|+|++++||+|+.||.|+||+.... .......|..+|.+++|+|++.+|++++.|+.|++||+.+++
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 98 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 98 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc
Confidence 3599999999999999999999999999999998544 445677899999999999999999999999999999999998
Q ss_pred eeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCC
Q 001287 110 LACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1107)
Q Consensus 110 ~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1107)
.+..+ .|...|.+++|+|++++|++|+.||.|++|++.. ++.. ..+..|. .+|.+++|+|
T Consensus 99 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~---~~~~~~~------------~~v~~~~~~~-- 159 (312)
T 4ery_A 99 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT--GKCL---KTLPAHS------------DPVSAVHFNR-- 159 (312)
T ss_dssp EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT--CCEE---EEECCCS------------SCEEEEEECT--
T ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--CEEE---EEecCCC------------CcEEEEEEcC--
Confidence 87776 5788999999999999999999999999999864 3433 2356555 7899999988
Q ss_pred CCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEE
Q 001287 189 SGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1107)
Q Consensus 189 ~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg 268 (1107)
++.+|++++.||.|++||+.+++....... .+...+.+++|. |++++|+++
T Consensus 160 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~----------------------------~~~~~~~~~~~~-~~~~~l~~~ 210 (312)
T 4ery_A 160 DGSLIVSSSYDGLCRIWDTASGQCLKTLID----------------------------DDNPPVSFVKFS-PNGKYILAA 210 (312)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEEECC----------------------------SSCCCEEEEEEC-TTSSEEEEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCceeeEEec----------------------------cCCCceEEEEEC-CCCCEEEEE
Confidence 688899999999999999998876543311 015578899985 999999999
Q ss_pred EcCCcEEEEeCCCC
Q 001287 269 YIDGDILLWNTSTT 282 (1107)
Q Consensus 269 ~~dG~I~lWd~~~~ 282 (1107)
+.||.|++||+.++
T Consensus 211 ~~d~~i~iwd~~~~ 224 (312)
T 4ery_A 211 TLDNTLKLWDYSKG 224 (312)
T ss_dssp ETTTEEEEEETTTT
T ss_pred cCCCeEEEEECCCC
Confidence 99999999998644
No 38
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.6e-31 Score=307.56 Aligned_cols=302 Identities=15% Similarity=0.202 Sum_probs=230.6
Q ss_pred CCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeeccC-------------------CCeEEEEEecCCCEEE
Q 001287 73 SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE-------------------SNITAFSVISGSHFMY 133 (1107)
Q Consensus 73 ~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~-------------------~~Vt~l~~~~~~~~l~ 133 (1107)
.+|...|.+++|+||+.+|++++ ++.++|||+.+++.+..+... ..|++++|+|++++|+
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 36999999999999999999876 789999999999877665321 2499999999999999
Q ss_pred EEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEE
Q 001287 134 IGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQII 213 (1107)
Q Consensus 134 ~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~ 213 (1107)
+|+.||.|++|+++. ++... .+.+|. ..|.+++|+| ++.+|++++.|+.|++||+.+++..
T Consensus 140 s~~~d~~i~iwd~~~--~~~~~---~~~~h~------------~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~~~~~ 200 (393)
T 1erj_A 140 TGAEDRLIRIWDIEN--RKIVM---ILQGHE------------QDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQCS 200 (393)
T ss_dssp EEETTSCEEEEETTT--TEEEE---EECCCS------------SCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EEcCCCeEEEEECCC--CcEEE---EEccCC------------CCEEEEEEcC--CCCEEEEecCCCcEEEEECCCCeeE
Confidence 999999999999864 44442 366666 7899999988 6788999999999999999999876
Q ss_pred EEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecC-CCCEEEEEEcCCcEEEEeCCCCCCCCCccCCC
Q 001287 214 FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS-SGSILAVGYIDGDILLWNTSTTASTKGQQTGS 292 (1107)
Q Consensus 214 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp-dg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~ 292 (1107)
....+ ...+++++|. | +|.+|++|+.||.|++||+.++..
T Consensus 201 ~~~~~------------------------------~~~v~~~~~~-~~~~~~l~~~s~d~~v~iwd~~~~~~-------- 241 (393)
T 1erj_A 201 LTLSI------------------------------EDGVTTVAVS-PGDGKYIAAGSLDRAVRVWDSETGFL-------- 241 (393)
T ss_dssp EEEEC------------------------------SSCEEEEEEC-STTCCEEEEEETTSCEEEEETTTCCE--------
T ss_pred EEEEc------------------------------CCCcEEEEEE-CCCCCEEEEEcCCCcEEEEECCCCcE--------
Confidence 65544 5678999986 6 999999999999999999865410
Q ss_pred CCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccc
Q 001287 293 RNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFA 372 (1107)
Q Consensus 293 ~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~ 372 (1107)
+.++.. . .
T Consensus 242 ---~~~~~~----------------------~-----------~------------------------------------ 249 (393)
T 1erj_A 242 ---VERLDS----------------------E-----------N------------------------------------ 249 (393)
T ss_dssp ---EEEEC------------------------------------------------------------------------
T ss_pred ---EEeecc----------------------c-----------c------------------------------------
Confidence 000000 0 0
Q ss_pred eEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCc
Q 001287 373 DMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSS 452 (1107)
Q Consensus 373 d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~ 452 (1107)
T Consensus 250 -------------------------------------------------------------------------------- 249 (393)
T 1erj_A 250 -------------------------------------------------------------------------------- 249 (393)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEee-ccceeeee
Q 001287 453 KGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICAL-DAEVQGIE 531 (1107)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l-~~~~~~~~ 531 (1107)
....+|...+..+++++++++|++|+.||+|++||+........... ........
T Consensus 250 ------------------------~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~ 305 (393)
T 1erj_A 250 ------------------------ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 305 (393)
T ss_dssp ---------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEE
T ss_pred ------------------------cCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEE
Confidence 00001111222336778888999999999999999976542211100 00111134
Q ss_pred ecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEE
Q 001287 532 VAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQF 611 (1107)
Q Consensus 532 l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~ 611 (1107)
+.+|...|.+++|++++.+|++|+.||.|++|++... .++..+.+|...|++++|
T Consensus 306 ~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~-------------------------~~~~~l~~h~~~v~~v~~ 360 (393)
T 1erj_A 306 YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-------------------------NPLLMLQGHRNSVISVAV 360 (393)
T ss_dssp EECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC-------------------------CEEEEEECCSSCEEEEEE
T ss_pred EecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-------------------------eEEEEECCCCCCEEEEEe
Confidence 6789999999999999999999999999999998765 256778899999999999
Q ss_pred cC------CCCEEEEEeCCCeEEEEEcCC
Q 001287 612 TS------SGAKLAVGFECGRVAVLDMNL 634 (1107)
Q Consensus 612 sp------~~~~la~Gs~dg~V~iwd~~~ 634 (1107)
++ ++++||+|+.||+|+||++..
T Consensus 361 ~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 361 ANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp CSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred cCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 86 688999999999999999864
No 39
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=7.5e-31 Score=308.03 Aligned_cols=353 Identities=12% Similarity=0.120 Sum_probs=258.1
Q ss_pred CEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecc
Q 001287 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLP 157 (1107)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~ 157 (1107)
.++.++|+|++.+|++++.|+.|++||+.+++....+.....+....+++++++|++|+.||.|++|++.. +....
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~-- 133 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNF--NLQRE-- 133 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTS--CEEEE--
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCC--cceee--
Confidence 46689999999999999999999999999987766665555566667899999999999999999999763 34432
Q ss_pred eeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEE-EEeCCccccccccccCCCCCCCC
Q 001287 158 YNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQII-FVGGGKDLQLKDGVVDSPSEGDS 236 (1107)
Q Consensus 158 ~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~ 236 (1107)
.+..|. ..|.+++|+| ++.+|++++.||.|++||+.+++.+ .+.+|
T Consensus 134 -~~~~h~------------~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h------------------ 180 (420)
T 3vl1_A 134 -IDQAHV------------SEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGH------------------ 180 (420)
T ss_dssp -ETTSSS------------SCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECC------------------
T ss_pred -eccccc------------CccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCC------------------
Confidence 245555 8899999998 6788999999999999999987654 34455
Q ss_pred ccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEee
Q 001287 237 TFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWS 316 (1107)
Q Consensus 237 ~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~ 316 (1107)
...|++++|. |++.+|++++.||.|++||+.+++. +..+..... .
T Consensus 181 ------------~~~v~~~~~~-~~~~~l~s~~~d~~v~iwd~~~~~~-----------~~~~~~~~~-~---------- 225 (420)
T 3vl1_A 181 ------------RATVTDIAII-DRGRNVLSASLDGTIRLWECGTGTT-----------IHTFNRKEN-P---------- 225 (420)
T ss_dssp ------------SSCEEEEEEE-TTTTEEEEEETTSCEEEEETTTTEE-----------EEEECBTTB-T----------
T ss_pred ------------CCcEEEEEEc-CCCCEEEEEcCCCcEEEeECCCCce-----------eEEeecCCC-C----------
Confidence 7789999986 9999999999999999999975421 110000000 0
Q ss_pred cccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEcc
Q 001287 317 TNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTS 396 (1107)
Q Consensus 317 ~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~ 396 (1107)
...+..+.+.+...
T Consensus 226 ---------------------------------------------------~~~v~~~~~~~~~~--------------- 239 (420)
T 3vl1_A 226 ---------------------------------------------------HDGVNSIALFVGTD--------------- 239 (420)
T ss_dssp ---------------------------------------------------TCCEEEEEEEECCC---------------
T ss_pred ---------------------------------------------------CCCccEEEEecCCc---------------
Confidence 00111111111100
Q ss_pred CCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccc
Q 001287 397 PGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKW 476 (1107)
Q Consensus 397 ~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 476 (1107)
..
T Consensus 240 --~~---------------------------------------------------------------------------- 241 (420)
T 3vl1_A 240 --RQ---------------------------------------------------------------------------- 241 (420)
T ss_dssp --SS----------------------------------------------------------------------------
T ss_pred --ce----------------------------------------------------------------------------
Confidence 00
Q ss_pred cccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCC-eEEEec
Q 001287 477 PLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS-SLAVGN 555 (1107)
Q Consensus 477 p~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~-~Lasg~ 555 (1107)
....+...+..+++++++++|++|+.||.|++||+..+.... ....+|...|++++|+|+++ +|++|+
T Consensus 242 -~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~l~~g~ 310 (420)
T 3vl1_A 242 -LHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTI----------QLPSKFTCSCNSLTVDGNNANYIYAGY 310 (420)
T ss_dssp -CGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEE----------EECCTTSSCEEEEEECSSCTTEEEEEE
T ss_pred -eeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeE----------EcccccCCCceeEEEeCCCCCEEEEEe
Confidence 000011223455899999999999999999999998876431 11346888999999999999 999999
Q ss_pred cCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEee-cCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 001287 556 EFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSL-VNSPVRALQFTSSGAKLAVGFECGRVAVLDMNL 634 (1107)
Q Consensus 556 ~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~ 634 (1107)
.||.|++|++..... ++..+.. |...|+++.+ +++++|++|+.||.|++||+..
T Consensus 311 ~dg~i~vwd~~~~~~------------------------~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 311 ENGMLAQWDLRSPEC------------------------PVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp TTSEEEEEETTCTTS------------------------CSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECC
T ss_pred CCCeEEEEEcCCCcC------------------------chhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccC
Confidence 999999999987521 2344555 7788888855 5788999999999999999876
Q ss_pred CeE---EE---EeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCC
Q 001287 635 LSV---LF---FTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 701 (1107)
Q Consensus 635 ~~~---~~---~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~ 701 (1107)
+.. +. ....+.+|...|.+++|++.... ...|++.+.+|.+.+|+.+.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-------------------~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 366 PESERPAIEFETPTFLVSNDDAVSQFCYVSDDES-------------------NGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp TTCCSCEECTTSCEEECCSSCCCCEEEEECCSSS-------------------SCEEEEEETTTEEEEEESCC
T ss_pred CCCCccceeccCccEEccCCcceEEEEEccCCCC-------------------cceEEEEcCCceEEEEeccC
Confidence 311 10 00123568899999999943211 22677888899999999864
No 40
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.5e-30 Score=297.32 Aligned_cols=205 Identities=12% Similarity=0.105 Sum_probs=170.5
Q ss_pred eecCCCCCeEEEEE-----cC-CCCEEEEEECCCcEEEEeCCCc--------ceeeeCCCCCCEEEEEEEeCCCEEEEEe
Q 001287 30 VHYGIPATASILAF-----DH-IQRLLAIATLDGRIKVIGGDGI--------EGLLISPSQLPYKNLEFLQNQGFLISIT 95 (1107)
Q Consensus 30 ~~~G~~~~i~~laf-----sp-~~~~LA~Gs~dg~I~iw~~~~~--------~~~~~~~h~~~V~~l~fs~d~~~L~S~s 95 (1107)
...||...|++++| ++ ++++||+|+.||.|+||+.... ....+.+|..+|.+++|+|++.+|++++
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s 95 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEc
Confidence 34699999999999 77 9999999999999999998532 2335678999999999999999999999
Q ss_pred CCCcEEEEEcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCC
Q 001287 96 NDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLL 174 (1107)
Q Consensus 96 ~d~~I~vWDl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~ 174 (1107)
.|++|++||+.+++.+..+ .|...|++++|+|++++|++|+.||.|++|++.. ...........|
T Consensus 96 ~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~---~~~~~~~~~~~~----------- 161 (343)
T 2xzm_R 96 WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG---ECKFSSAEKENH----------- 161 (343)
T ss_dssp TTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS---CEEEECCTTTSC-----------
T ss_pred CCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC---CceeeeecccCC-----------
Confidence 9999999999999887766 6889999999999999999999999999999862 211100011123
Q ss_pred CCCCeEEEEcccCCC--------CCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCC
Q 001287 175 SHQPVVGVLPHPNSS--------GNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQ 246 (1107)
Q Consensus 175 ~~~~V~~v~f~P~~~--------~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1107)
...|.+++|+|... +.+|++++.||.|++||........+.+|
T Consensus 162 -~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h---------------------------- 212 (343)
T 2xzm_R 162 -SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAH---------------------------- 212 (343)
T ss_dssp -SSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECC----------------------------
T ss_pred -CceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCc----------------------------
Confidence 27899999998521 26799999999999999655444455566
Q ss_pred CCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCC
Q 001287 247 PEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 247 ~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~ 280 (1107)
...|++++|. |+|++|++|+.||.|++||+.
T Consensus 213 --~~~v~~~~~s-~~g~~l~sgs~dg~v~iwd~~ 243 (343)
T 2xzm_R 213 --ESNVNHLSIS-PNGKYIATGGKDKKLLIWDIL 243 (343)
T ss_dssp --SSCEEEEEEC-TTSSEEEEEETTCEEEEEESS
T ss_pred --cccceEEEEC-CCCCEEEEEcCCCeEEEEECC
Confidence 7789999985 999999999999999999984
No 41
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.8e-30 Score=290.64 Aligned_cols=297 Identities=15% Similarity=0.225 Sum_probs=227.9
Q ss_pred ccCCCeEEEEEecCC-CEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEE
Q 001287 115 KWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1107)
Q Consensus 115 ~~~~~Vt~l~~~~~~-~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~l 193 (1107)
.|.+.|++++|+|++ ++|++|+.|++|++|++.............+.+|. ..|.+++|+| ++.+|
T Consensus 15 gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~s~--dg~~l 80 (319)
T 3frx_A 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS------------HIVQDCTLTA--DGAYA 80 (319)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCS------------SCEEEEEECT--TSSEE
T ss_pred cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCc------------ccEEEEEECC--CCCEE
Confidence 688999999999965 89999999999999998754333222123456666 8899999988 78889
Q ss_pred EEEECCCeEEEEEccCCEEEE-EeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCC
Q 001287 194 LIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 272 (1107)
Q Consensus 194 l~~~~dg~V~vwdl~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG 272 (1107)
++++.|++|++||+.+++... +.+| ...|.+++|. |++.+|++|+.||
T Consensus 81 ~s~s~D~~v~~wd~~~~~~~~~~~~h------------------------------~~~v~~~~~~-~~~~~l~s~s~D~ 129 (319)
T 3frx_A 81 LSASWDKTLRLWDVATGETYQRFVGH------------------------------KSDVMSVDID-KKASMIISGSRDK 129 (319)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECC------------------------------SSCEEEEEEC-TTSCEEEEEETTS
T ss_pred EEEeCCCEEEEEECCCCCeeEEEccC------------------------------CCcEEEEEEc-CCCCEEEEEeCCC
Confidence 999999999999999987754 4566 7789999985 9999999999999
Q ss_pred cEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccc
Q 001287 273 DILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSS 352 (1107)
Q Consensus 273 ~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~ 352 (1107)
+|++||+... .+.. + .+.
T Consensus 130 ~i~vwd~~~~------------~~~~--------------~-------------------~~h----------------- 147 (319)
T 3frx_A 130 TIKVWTIKGQ------------CLAT--------------L-------------------LGH----------------- 147 (319)
T ss_dssp CEEEEETTSC------------EEEE--------------E-------------------CCC-----------------
T ss_pred eEEEEECCCC------------eEEE--------------E-------------------ecc-----------------
Confidence 9999998521 0000 0 000
Q ss_pred cccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCccccc
Q 001287 353 GMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPI 432 (1107)
Q Consensus 353 ~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (1107)
...+..+.+.|..
T Consensus 148 ---------------~~~v~~~~~~~~~---------------------------------------------------- 160 (319)
T 3frx_A 148 ---------------NDWVSQVRVVPNE---------------------------------------------------- 160 (319)
T ss_dssp ---------------SSCEEEEEECCC-----------------------------------------------------
T ss_pred ---------------CCcEEEEEEccCC----------------------------------------------------
Confidence 0001111111110
Q ss_pred CCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeC
Q 001287 433 SDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDA 512 (1107)
Q Consensus 433 ~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~ 512 (1107)
....++.++++|+.|++|++||+
T Consensus 161 ---------------------------------------------------------~~~~~~~~l~s~~~d~~i~~wd~ 183 (319)
T 3frx_A 161 ---------------------------------------------------------KADDDSVTIISAGNDKMVKAWNL 183 (319)
T ss_dssp --------------------------------------------------------------CCEEEEEETTSCEEEEET
T ss_pred ---------------------------------------------------------CCCCCccEEEEEeCCCEEEEEEC
Confidence 11234448999999999999999
Q ss_pred CCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCc
Q 001287 513 TYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKI 592 (1107)
Q Consensus 513 ~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 592 (1107)
....+. ..+.+|...|++++|+|++++|++|+.||.|+||++...
T Consensus 184 ~~~~~~-----------~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~------------------------ 228 (319)
T 3frx_A 184 NQFQIE-----------ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK------------------------ 228 (319)
T ss_dssp TTTEEE-----------EEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT------------------------
T ss_pred Ccchhh-----------eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC------------------------
Confidence 887654 457799999999999999999999999999999999875
Q ss_pred ceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeec-C----CCCCCceEEEEEeecccCccccC
Q 001287 593 SLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDD-I----SGSSSPIISMTWTEFKNTHSLAK 667 (1107)
Q Consensus 593 ~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~-~----~~h~~~V~~l~fs~~~~~~~~~~ 667 (1107)
+++..+. +...|.+++|+|++.+|++++.++ +++|++.....+..... + ..|...|.+++|+
T Consensus 229 -~~~~~~~-~~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---------- 295 (319)
T 3frx_A 229 -KAMYTLS-AQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS---------- 295 (319)
T ss_dssp -EEEEEEE-CCSCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEEC----------
T ss_pred -cEEEEec-CCCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCccccccccCcCcceeEEEEC----------
Confidence 2344444 456899999999999999998766 99999998776643321 1 2356789999999
Q ss_pred CCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCc
Q 001287 668 NPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSE 702 (1107)
Q Consensus 668 ~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g 702 (1107)
|++.+|++|+.|+.|++||..|+
T Consensus 296 ------------pdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 296 ------------ADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp ------------TTSSEEEEEETTSCEEEEEEEEC
T ss_pred ------------CCCCEEEEeecCceEEEEEEeec
Confidence 67899999999999999998764
No 42
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.4e-31 Score=310.47 Aligned_cols=209 Identities=15% Similarity=0.179 Sum_probs=169.2
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcc-eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCC
Q 001287 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR 108 (1107)
Q Consensus 30 ~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~ 108 (1107)
...||.+.|.+++|+|++++||+|+.||.|+||+....+ ...+..|..+|.+++|+|++.+|++++.|+.|++||+.+.
T Consensus 61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~ 140 (380)
T 3iz6_a 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQ 140 (380)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCC
T ss_pred cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCC
Confidence 346999999999999999999999999999999985544 4567789999999999999999999999999999999764
Q ss_pred e-------eee-eeccCCCeEEEEEecCC-CEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCe
Q 001287 109 S-------LAC-CLKWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1107)
Q Consensus 109 ~-------~~~-~~~~~~~Vt~l~~~~~~-~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1107)
. ... ...|.+.|.++.|.|++ .+|++|+.|++|++|++.. +..... +... .+..+...|
T Consensus 141 ~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~--~~~~~~---~~~~-------~~~~h~~~v 208 (380)
T 3iz6_a 141 ADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTT--GQRISI---FGSE-------FPSGHTADV 208 (380)
T ss_dssp SSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTT--CCEEEE---ECCC-------SSSSCCSCE
T ss_pred ccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCC--CcEEEE---eecc-------cCCCCccCe
Confidence 2 122 23678889999999874 5799999999999999865 333321 2100 112233789
Q ss_pred EEEEcccCCCCCEEEEEECCCeEEEEEccCC-EE-EEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEe
Q 001287 180 VGVLPHPNSSGNRVLIAYENALVILWDVSEA-QI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCW 257 (1107)
Q Consensus 180 ~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~-~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w 257 (1107)
.++.|+|. ++.+|++|+.||.|++||+... +. ..+.+| ...|++++|
T Consensus 209 ~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h------------------------------~~~v~~v~~ 257 (380)
T 3iz6_a 209 LSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGH------------------------------EGDINSVKF 257 (380)
T ss_dssp EEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCC------------------------------SSCCCEEEE
T ss_pred EEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCc------------------------------CCCeEEEEE
Confidence 99999875 5778999999999999999743 33 345556 778999998
Q ss_pred ecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 258 ASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 258 ~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
. |+|.+|++|+.||+|++||+.++
T Consensus 258 ~-p~~~~l~s~s~D~~i~lwd~~~~ 281 (380)
T 3iz6_a 258 F-PDGQRFGTGSDDGTCRLFDMRTG 281 (380)
T ss_dssp C-TTSSEEEEECSSSCEEEEETTTT
T ss_pred e-cCCCeEEEEcCCCeEEEEECCCC
Confidence 6 99999999999999999999754
No 43
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.7e-31 Score=299.01 Aligned_cols=324 Identities=15% Similarity=0.158 Sum_probs=254.3
Q ss_pred CCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCC-eeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCce
Q 001287 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 153 (1107)
Q Consensus 75 h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~-~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l 153 (1107)
|.++|.+++|+|||.+++.+..++.+.+|+.... ..+....|...|++++|+|+++++++++ +|.|++|+++......
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 5668999999999999998888887777765554 4556668999999999999999999999 9999999987532111
Q ss_pred eecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEE---EEEeCCccccccccccCC
Q 001287 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI---IFVGGGKDLQLKDGVVDS 230 (1107)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~---~~~~g~~~~~~~~~~~~~ 230 (1107)
....+....|. ..|.+++|+| ++++|++++.||.|++||+.+++. ....+|
T Consensus 87 ~~~~~~~~~~~------------~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~------------ 140 (337)
T 1gxr_A 87 PVSQLDCLNRD------------NYIRSCKLLP--DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSS------------ 140 (337)
T ss_dssp CSEEEECSCTT------------SBEEEEEECT--TSSEEEEEESSSEEEEEECCCC--EEEEEEECS------------
T ss_pred eeecccccCCC------------CcEEEEEEcC--CCCEEEEEcCCCcEEEEECCCCCcceeeecccC------------
Confidence 11011111333 7899999988 688899999999999999998763 223333
Q ss_pred CCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccce
Q 001287 231 PSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPV 310 (1107)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i 310 (1107)
...|++++|. |++++|++++.||.|++||+.+.+. +.
T Consensus 141 ------------------~~~i~~~~~~-~~~~~l~~~~~dg~v~~~d~~~~~~-----------~~------------- 177 (337)
T 1gxr_A 141 ------------------APACYALAIS-PDSKVCFSCCSDGNIAVWDLHNQTL-----------VR------------- 177 (337)
T ss_dssp ------------------SSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEE-----------EE-------------
T ss_pred ------------------CCceEEEEEC-CCCCEEEEEeCCCcEEEEeCCCCce-----------ee-------------
Confidence 6779999986 9999999999999999999864310 00
Q ss_pred EEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcce
Q 001287 311 IVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKAD 390 (1107)
Q Consensus 311 ~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~ 390 (1107)
.+ .+
T Consensus 178 -~~-------------------~~-------------------------------------------------------- 181 (337)
T 1gxr_A 178 -QF-------------------QG-------------------------------------------------------- 181 (337)
T ss_dssp -EE-------------------CC--------------------------------------------------------
T ss_pred -ee-------------------ec--------------------------------------------------------
Confidence 00 00
Q ss_pred EEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCc
Q 001287 391 LFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQ 470 (1107)
Q Consensus 391 l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1107)
+..
T Consensus 182 ------------------------------------------~~~----------------------------------- 184 (337)
T 1gxr_A 182 ------------------------------------------HTD----------------------------------- 184 (337)
T ss_dssp ------------------------------------------CSS-----------------------------------
T ss_pred ------------------------------------------ccC-----------------------------------
Confidence 000
Q ss_pred cCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCe
Q 001287 471 AGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSS 550 (1107)
Q Consensus 471 ~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~ 550 (1107)
.+..++++|++++|++++.||.|++||+..+.... ...|...|.+++|+|++++
T Consensus 185 --------------~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~------------~~~~~~~v~~~~~s~~~~~ 238 (337)
T 1gxr_A 185 --------------GASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ------------QHDFTSQIFSLGYCPTGEW 238 (337)
T ss_dssp --------------CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE------------EEECSSCEEEEEECTTSSE
T ss_pred --------------ceEEEEECCCCCEEEEEecCCcEEEEECCCCceEe------------eecCCCceEEEEECCCCCE
Confidence 00112456677799999999999999999877441 1135668999999999999
Q ss_pred EEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 001287 551 LAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVL 630 (1107)
Q Consensus 551 Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iw 630 (1107)
|++++.+|.|++|++.... ...+..|...|++++|+|++++|++|+.||.|++|
T Consensus 239 l~~~~~~~~i~~~~~~~~~--------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 292 (337)
T 1gxr_A 239 LAVGMESSNVEVLHVNKPD--------------------------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 292 (337)
T ss_dssp EEEEETTSCEEEEETTSSC--------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EEEEcCCCcEEEEECCCCC--------------------------eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEE
Confidence 9999999999999998751 24567899999999999999999999999999999
Q ss_pred EcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeC
Q 001287 631 DMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1107)
Q Consensus 631 d~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~ 699 (1107)
|+.++..+.. ..|..+|.++.|+ |++.+|++++.||.|.+||.
T Consensus 293 ~~~~~~~~~~----~~~~~~v~~~~~s----------------------~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 293 RTPYGASIFQ----SKESSSVLSCDIS----------------------VDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ETTTCCEEEE----EECSSCEEEEEEC----------------------TTSCEEEEEETTSCEEEEEE
T ss_pred ECCCCeEEEE----ecCCCcEEEEEEC----------------------CCCCEEEEecCCCeEEEEEE
Confidence 9999887743 2388999999999 56889999999999999985
No 44
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-30 Score=304.43 Aligned_cols=212 Identities=16% Similarity=0.259 Sum_probs=167.5
Q ss_pred eeeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCccee-eeCCCC------------------CCEEEEEEEeCC
Q 001287 28 IAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQ------------------LPYKNLEFLQNQ 88 (1107)
Q Consensus 28 ~~~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~-~~~~h~------------------~~V~~l~fs~d~ 88 (1107)
+....+|.+.|.|++|+|++++||+|+ ++.|+||+....+.+ .+..|. ..|++++|+|++
T Consensus 57 ~~~~~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg 135 (393)
T 1erj_A 57 LHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG 135 (393)
T ss_dssp EEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS
T ss_pred eEEecCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCC
Confidence 344458999999999999999999987 689999998654443 333332 249999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeeccccccc
Q 001287 89 GFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1107)
Q Consensus 89 ~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~ 167 (1107)
.+|++++.|+.|+|||+.+++.+..+ .|...|++++|+|++++|++|+.||+|++|++.. ++... .+. +.
T Consensus 136 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~--~~~~~---~~~-~~--- 206 (393)
T 1erj_A 136 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT--GQCSL---TLS-IE--- 206 (393)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--TEEEE---EEE-CS---
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC--CeeEE---EEE-cC---
Confidence 99999999999999999999887776 6889999999999999999999999999999764 34332 122 11
Q ss_pred ccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCC
Q 001287 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQP 247 (1107)
Q Consensus 168 ~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1107)
..+.+++|+|. ++.+|++++.||.|++||+.++..+........ ....
T Consensus 207 ---------~~v~~~~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~----------------------~~~~ 254 (393)
T 1erj_A 207 ---------DGVTTVAVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENE----------------------SGTG 254 (393)
T ss_dssp ---------SCEEEEEECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC----------------------------CC
T ss_pred ---------CCcEEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeeccccc----------------------CCCC
Confidence 56999999985 678899999999999999999876554321000 0001
Q ss_pred CCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 248 EEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 248 ~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
+...|++++|. |+|++|++|+.||.|++||+.+.
T Consensus 255 h~~~v~~v~~~-~~g~~l~s~s~d~~v~~wd~~~~ 288 (393)
T 1erj_A 255 HKDSVYSVVFT-RDGQSVVSGSLDRSVKLWNLQNA 288 (393)
T ss_dssp CSSCEEEEEEC-TTSSEEEEEETTSEEEEEEC---
T ss_pred CCCCEEEEEEC-CCCCEEEEEeCCCEEEEEECCCC
Confidence 26789999985 99999999999999999999653
No 45
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.98 E-value=9.7e-30 Score=288.81 Aligned_cols=202 Identities=13% Similarity=0.187 Sum_probs=161.6
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCc--cee-ee-CC-CCCCEEEEEEEeCCCEEEEEeCCCcEEEEE
Q 001287 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI--EGL-LI-SP-SQLPYKNLEFLQNQGFLISITNDNEIQVWS 104 (1107)
Q Consensus 30 ~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~--~~~-~~-~~-h~~~V~~l~fs~d~~~L~S~s~d~~I~vWD 104 (1107)
...||...|.+++|+|+ +||+|+.||.|+||++... ... .+ .. |..+|.+|+|+|++.+|++++.|++|+|||
T Consensus 9 ~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~ 86 (330)
T 2hes_X 9 SLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWA 86 (330)
T ss_dssp EEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 34589999999999997 9999999999999998653 222 22 34 999999999999999999999999999999
Q ss_pred cCC-------Ceeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCC--ceeecceeecccccccccCCCCC
Q 001287 105 LES-------RSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEG--KLFQLPYNISADALSEKAGFPLL 174 (1107)
Q Consensus 105 l~s-------~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~--~l~~~~~~i~~~~~~~~~~~~~~ 174 (1107)
+.. ...+..+ .|...|++++|+|++++|++|+.|++|++|+++.... +.. ..+.+|.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~---~~~~~h~---------- 153 (330)
T 2hes_X 87 KEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECI---SVLQEHS---------- 153 (330)
T ss_dssp C-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEE---EEECCCS----------
T ss_pred cccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEE---EEeccCC----------
Confidence 953 2344444 6889999999999999999999999999999853211 222 2355665
Q ss_pred CCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCC--EE-EEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCc
Q 001287 175 SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA--QI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 251 (1107)
Q Consensus 175 ~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~--~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1107)
..|.+++|+| ++.+|++++.|++|++||..++ +. ..+.+| ...
T Consensus 154 --~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h------------------------------~~~ 199 (330)
T 2hes_X 154 --QDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGH------------------------------EGT 199 (330)
T ss_dssp --SCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCC------------------------------SSC
T ss_pred --CceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCC------------------------------CCc
Confidence 7899999999 6788999999999999998876 23 334556 778
Q ss_pred eeEEEeecCC--CCEEEEEEcCCcEEEEeCCC
Q 001287 252 ISALCWASSS--GSILAVGYIDGDILLWNTST 281 (1107)
Q Consensus 252 Vtsl~w~spd--g~~l~sg~~dG~I~lWd~~~ 281 (1107)
|.+++|. |+ +..|++|+.||+|++||+..
T Consensus 200 v~~~~~~-~~~~~~~l~s~s~D~~v~iw~~~~ 230 (330)
T 2hes_X 200 VWSSDFD-KTEGVFRLCSGSDDSTVRVWKYMG 230 (330)
T ss_dssp EEEEEEC-CSSSSCEEEEEETTSCEEEEEEEE
T ss_pred EEEEEec-CCCCeeEEEEEeCCCeEEEEEecC
Confidence 9999986 88 67899999999999999853
No 46
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.98 E-value=6e-30 Score=287.80 Aligned_cols=289 Identities=17% Similarity=0.273 Sum_probs=231.0
Q ss_pred eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEee
Q 001287 69 GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1107)
Q Consensus 69 ~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d 147 (1107)
...+.+|..+|++++|+|++.+|++++.|+.|++||+.+++....+ .|...|++++|+|++++|++|+.||.|++|++.
T Consensus 16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~ 95 (312)
T 4ery_A 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 95 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECC
Confidence 4467789999999999999999999999999999999999887766 688899999999999999999999999999986
Q ss_pred cCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEE-eCCcccccccc
Q 001287 148 ADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV-GGGKDLQLKDG 226 (1107)
Q Consensus 148 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~-~g~~~~~~~~~ 226 (1107)
. ++... .+.+|. ..|.++.|+| ++.+|++++.||.|++||+.+++.... ..|
T Consensus 96 ~--~~~~~---~~~~~~------------~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------- 148 (312)
T 4ery_A 96 S--GKCLK---TLKGHS------------NYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH-------- 148 (312)
T ss_dssp T--CCEEE---EEECCS------------SCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCC--------
T ss_pred C--CcEEE---EEcCCC------------CCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCC--------
Confidence 4 34442 355565 7899999988 678899999999999999998876543 334
Q ss_pred ccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccC
Q 001287 227 VVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAER 306 (1107)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 306 (1107)
...|++++|. |++.+|++|+.||.|++||+.+++. +.
T Consensus 149 ----------------------~~~v~~~~~~-~~~~~l~~~~~d~~i~~wd~~~~~~-----------~~--------- 185 (312)
T 4ery_A 149 ----------------------SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQC-----------LK--------- 185 (312)
T ss_dssp ----------------------SSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCE-----------EE---------
T ss_pred ----------------------CCcEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCce-----------ee---------
Confidence 6789999985 9999999999999999999864310 00
Q ss_pred ccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCC
Q 001287 307 RLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGN 386 (1107)
Q Consensus 307 ~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~ 386 (1107)
.+ .. .
T Consensus 186 -----~~---------~~-----------~-------------------------------------------------- 190 (312)
T 4ery_A 186 -----TL---------ID-----------D-------------------------------------------------- 190 (312)
T ss_dssp -----EE---------CC-----------S--------------------------------------------------
T ss_pred -----EE---------ec-----------c--------------------------------------------------
Confidence 00 00 0
Q ss_pred CcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccC
Q 001287 387 HKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHS 466 (1107)
Q Consensus 387 ~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1107)
+..
T Consensus 191 ----------------------------------------------~~~------------------------------- 193 (312)
T 4ery_A 191 ----------------------------------------------DNP------------------------------- 193 (312)
T ss_dssp ----------------------------------------------SCC-------------------------------
T ss_pred ----------------------------------------------CCC-------------------------------
Confidence 000
Q ss_pred CCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEE--EEE
Q 001287 467 SHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVST--LSF 544 (1107)
Q Consensus 467 ~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~--l~f 544 (1107)
.+..++++|++++|++|+.||.|++||+..+.+. ..+.+|...+.+ ..|
T Consensus 194 ------------------~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~~~~ 244 (312)
T 4ery_A 194 ------------------PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL-----------KTYTGHKNEKYCIFANF 244 (312)
T ss_dssp ------------------CEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE-----------EEECSSCCSSSCCCEEE
T ss_pred ------------------ceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE-----------EEEEecCCceEEEEEEE
Confidence 0011256677889999999999999999988754 234455443322 234
Q ss_pred E-eCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEe-
Q 001287 545 C-FINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGF- 622 (1107)
Q Consensus 545 s-pd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs- 622 (1107)
+ +++.+|++|+.||.|++|++... .++..+.+|...|.+++|+|++.++|+++
T Consensus 245 ~~~~~~~l~sg~~dg~i~vwd~~~~-------------------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~ 299 (312)
T 4ery_A 245 SVTGGKWIVSGSEDNLVYIWNLQTK-------------------------EIVQKLQGHTDVVISTACHPTENIIASAAL 299 (312)
T ss_dssp ECSSSCEEEECCTTSCEEEEETTTC-------------------------CEEEEECCCSSCEEEEEECSSSSEEEEEEC
T ss_pred EeCCCcEEEEECCCCEEEEEECCCc-------------------------hhhhhhhccCCcEEEEeecCcCCceEEEEc
Confidence 4 67889999999999999998765 35677889999999999999999999987
Q ss_pred -CCCeEEEEEcC
Q 001287 623 -ECGRVAVLDMN 633 (1107)
Q Consensus 623 -~dg~V~iwd~~ 633 (1107)
.||+|++|+..
T Consensus 300 ~~d~~i~~W~~d 311 (312)
T 4ery_A 300 ENDKTIKLWKSD 311 (312)
T ss_dssp TTTCCEEEEECC
T ss_pred cCCccEEEecCC
Confidence 69999999864
No 47
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.98 E-value=3.3e-30 Score=294.37 Aligned_cols=302 Identities=16% Similarity=0.184 Sum_probs=219.5
Q ss_pred eeeCCCCCCEEEEEE-----Ee-CCCEEEEEeCCCcEEEEEcCCCe-------eeeee-ccCCCeEEEEEecCCCEEEEE
Q 001287 70 LLISPSQLPYKNLEF-----LQ-NQGFLISITNDNEIQVWSLESRS-------LACCL-KWESNITAFSVISGSHFMYIG 135 (1107)
Q Consensus 70 ~~~~~h~~~V~~l~f-----s~-d~~~L~S~s~d~~I~vWDl~s~~-------~~~~~-~~~~~Vt~l~~~~~~~~l~~g 135 (1107)
..+.+|..+|++++| ++ ++.+|++++.|++|++||+.+.. ....+ .|...|++++|+|++.++++|
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~ 94 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISS 94 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEE
T ss_pred eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEE
Confidence 356789999999999 66 88999999999999999997542 33333 688899999999999999999
Q ss_pred cCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEE
Q 001287 136 DENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV 215 (1107)
Q Consensus 136 ~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~ 215 (1107)
+.||+|++|++.. ++... .+.+|. ..|.+++|+| ++.+|++++.|+.|++||+........
T Consensus 95 s~D~~v~lwd~~~--~~~~~---~~~~h~------------~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~~~~~~~ 155 (343)
T 2xzm_R 95 SWDKTLRLWDLRT--GTTYK---RFVGHQ------------SEVYSVAFSP--DNRQILSAGAEREIKLWNILGECKFSS 155 (343)
T ss_dssp ETTSEEEEEETTS--SCEEE---EEECCC------------SCEEEEEECS--STTEEEEEETTSCEEEEESSSCEEEEC
T ss_pred cCCCcEEEEECCC--CcEEE---EEcCCC------------CcEEEEEECC--CCCEEEEEcCCCEEEEEeccCCceeee
Confidence 9999999999864 44442 366666 8899999998 688899999999999999986544332
Q ss_pred eCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCC----------CEEEEEEcCCcEEEEeCCCCCCC
Q 001287 216 GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG----------SILAVGYIDGDILLWNTSTTAST 285 (1107)
Q Consensus 216 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg----------~~l~sg~~dG~I~lWd~~~~~~~ 285 (1107)
... ..+...|.+++|. |++ .+|++++.||.|++||....
T Consensus 156 ~~~---------------------------~~~~~~v~~~~~~-~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--- 204 (343)
T 2xzm_R 156 AEK---------------------------ENHSDWVSCVRYS-PIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ--- 204 (343)
T ss_dssp CTT---------------------------TSCSSCEEEEEEC-CCCCSCSCCCSSCCEEEEEETTSEEEEEETTTE---
T ss_pred ecc---------------------------cCCCceeeeeeec-cccccccccCCCCCEEEEEcCCCEEEEEcCCCc---
Confidence 210 0116679999985 776 78999999999999994210
Q ss_pred CCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeee
Q 001287 286 KGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDI 365 (1107)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l 365 (1107)
.. ..+ .+
T Consensus 205 ----------~~-------------~~~-------------------~~------------------------------- 211 (343)
T 2xzm_R 205 ----------IR-------------YTF-------------------KA------------------------------- 211 (343)
T ss_dssp ----------EE-------------EEE-------------------EC-------------------------------
T ss_pred ----------ee-------------EEE-------------------cC-------------------------------
Confidence 00 000 00
Q ss_pred cCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEec
Q 001287 366 TLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLL 445 (1107)
Q Consensus 366 ~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~ 445 (1107)
|
T Consensus 212 -------------------------------------------------------------------h------------ 212 (343)
T 2xzm_R 212 -------------------------------------------------------------------H------------ 212 (343)
T ss_dssp -------------------------------------------------------------------C------------
T ss_pred -------------------------------------------------------------------c------------
Confidence 0
Q ss_pred cCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCc-eeEEEeec
Q 001287 446 PFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPV-FKLICALD 524 (1107)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~-l~~~~~l~ 524 (1107)
...+..++++|++++|++|+.||+|+|||+.... ..
T Consensus 213 -------------------------------------~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~------ 249 (343)
T 2xzm_R 213 -------------------------------------ESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQ------ 249 (343)
T ss_dssp -------------------------------------SSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCS------
T ss_pred -------------------------------------cccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccc------
Confidence 0011122577888899999999999999984332 22
Q ss_pred cceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCc
Q 001287 525 AEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNS 604 (1107)
Q Consensus 525 ~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~ 604 (1107)
..+ .+...|++++|+|++.+|+++ .|+.|++|++..........+.... +. ......+|..
T Consensus 250 -----~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~------~~------~~~~~~~~~~ 310 (343)
T 2xzm_R 250 -----REF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEP------IT------KAEGQKGKNP 310 (343)
T ss_dssp -----EEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCS------GG------GBTTBCCSCC
T ss_pred -----eee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCc------ch------hhhhhcCCCC
Confidence 111 234579999999999888755 5888999998765321100000000 00 0001136888
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 001287 605 PVRALQFTSSGAKLAVGFECGRVAVLDMNLL 635 (1107)
Q Consensus 605 ~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~ 635 (1107)
.|++++|+|++++||+|+.||.|++||+.++
T Consensus 311 ~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 311 QCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred ceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 9999999999999999999999999998754
No 48
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.2e-29 Score=288.06 Aligned_cols=310 Identities=17% Similarity=0.245 Sum_probs=219.6
Q ss_pred Ceeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceee-cc-cccccccCCCCCCCCCeEEEEc
Q 001287 108 RSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNI-SA-DALSEKAGFPLLSHQPVVGVLP 184 (1107)
Q Consensus 108 ~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i-~~-~~~~~~~~~~~~~~~~V~~v~f 184 (1107)
.+++..+ .|.+.|++++|+++ +|++|+.||.|++|++......+.. .+ .. |. ..|.+++|
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~---~~~~~~h~------------~~v~~v~~ 66 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLID---VLDETAHK------------KAIRSVAW 66 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEE---EECTTCCC------------SCEEEEEE
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEE---EEecCCcc------------CCEEEEEE
Confidence 3344444 68899999999987 9999999999999998753333332 13 22 44 78999999
Q ss_pred ccCCCCCEEEEEECCCeEEEEEccCC-------EE-EEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEE
Q 001287 185 HPNSSGNRVLIAYENALVILWDVSEA-------QI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALC 256 (1107)
Q Consensus 185 ~P~~~~~~ll~~~~dg~V~vwdl~~~-------~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~ 256 (1107)
+| ++.+|++++.|++|+|||+... +. ..+.+| ...|++++
T Consensus 67 sp--~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h------------------------------~~~V~~v~ 114 (330)
T 2hes_X 67 RP--HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGH------------------------------ENEVKGVA 114 (330)
T ss_dssp CT--TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----------------------------------CEEEEE
T ss_pred CC--CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCC------------------------------CCcEEEEE
Confidence 98 6888999999999999998542 22 223445 77899999
Q ss_pred eecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCC
Q 001287 257 WASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDE 336 (1107)
Q Consensus 257 w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~ 336 (1107)
|. |+|++|++|+.||+|++||+...... . ..+.
T Consensus 115 ~s-p~g~~las~s~D~~v~iwd~~~~~~~-----------~----------~~~~------------------------- 147 (330)
T 2hes_X 115 WS-NDGYYLATCSRDKSVWIWETDESGEE-----------Y----------ECIS------------------------- 147 (330)
T ss_dssp EC-TTSCEEEEEETTSCEEEEECCTTCCC-----------C----------EEEE-------------------------
T ss_pred EC-CCCCEEEEEeCCCEEEEEeccCCCCC-----------e----------EEEE-------------------------
Confidence 85 99999999999999999998532000 0 0000
Q ss_pred CCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccC
Q 001287 337 IGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQE 416 (1107)
Q Consensus 337 ~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~ 416 (1107)
.+
T Consensus 148 --------~~---------------------------------------------------------------------- 149 (330)
T 2hes_X 148 --------VL---------------------------------------------------------------------- 149 (330)
T ss_dssp --------EE----------------------------------------------------------------------
T ss_pred --------Ee----------------------------------------------------------------------
Confidence 00
Q ss_pred CCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCc
Q 001287 417 KKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDR 496 (1107)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~ 496 (1107)
.+|...+..++++|+++
T Consensus 150 ---------------------------------------------------------------~~h~~~v~~v~~~p~~~ 166 (330)
T 2hes_X 150 ---------------------------------------------------------------QEHSQDVKHVIWHPSEA 166 (330)
T ss_dssp ---------------------------------------------------------------CCCSSCEEEEEECSSSS
T ss_pred ---------------------------------------------------------------ccCCCceEEEEECCCCC
Confidence 00001112235667788
Q ss_pred EEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeC--CCeEEEeccCceEEEEEecCCCCCccc
Q 001287 497 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFI--NSSLAVGNEFGLVYIYNLNGSLDAKNF 574 (1107)
Q Consensus 497 ~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd--~~~Lasg~~dg~V~vw~~~~~~~~~~~ 574 (1107)
+|++|+.||+|++||...+....+ ..+.+|...|.+++|+|+ +.+|++|+.|++|+||++.......
T Consensus 167 ~l~s~s~D~~i~iW~~~~~~~~~~---------~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~-- 235 (330)
T 2hes_X 167 LLASSSYDDTVRIWKDYDDDWECV---------AVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDD-- 235 (330)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEE---------EEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTS--
T ss_pred EEEEEcCCCeEEEEECCCCCeeEE---------EEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccc--
Confidence 999999999999999876532211 246799999999999998 6789999999999999997642110
Q ss_pred eeeccCcCcceecccCCcceeEEEEee-cCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCC-ceE
Q 001287 575 LFVLETKSEVHALPEGKISLCRAVFSL-VNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSS-PII 652 (1107)
Q Consensus 575 ~~~~~~~~~~~~~~~~~g~~~~~~~~~-h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~-~V~ 652 (1107)
...+.+...+.. |...|++++|++++ +||+|+.||.|+|||..++........+.+|.. .|.
T Consensus 236 ---------------~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~ 299 (330)
T 2hes_X 236 ---------------QQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEIN 299 (330)
T ss_dssp ---------------CEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEE
T ss_pred ---------------cceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEE
Confidence 001123444444 89999999999765 899999999999999988753222233457887 899
Q ss_pred EEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCC
Q 001287 653 SMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 701 (1107)
Q Consensus 653 ~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~ 701 (1107)
+++|++. .++.+|++|+.||+|++||.+.
T Consensus 300 ~v~~~~~--------------------~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 300 VVKWLEL--------------------NGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEC-------------------------CCEEEEETTSEEEEEEC--
T ss_pred EEEEecC--------------------CCceEEEEecCCCcEEEEEecc
Confidence 9999942 1467899999999999999764
No 49
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.98 E-value=6.9e-30 Score=290.15 Aligned_cols=214 Identities=15% Similarity=0.179 Sum_probs=175.7
Q ss_pred cccccceeeeecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEeCCCcc------eeeeCCCCCCEEEEEEEeCCCEEEE
Q 001287 21 AADLNLRIAVHYGIPATASILAFDHI-QRLLAIATLDGRIKVIGGDGIE------GLLISPSQLPYKNLEFLQNQGFLIS 93 (1107)
Q Consensus 21 ~~~~~~~~~~~~G~~~~i~~lafsp~-~~~LA~Gs~dg~I~iw~~~~~~------~~~~~~h~~~V~~l~fs~d~~~L~S 93 (1107)
.+++.++-+ ..||.+.|++++|+|+ +++||+|+.||.|+||++...+ ...+.+|..+|.+++|+|++.+|++
T Consensus 25 ~~~~~l~~t-L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s 103 (340)
T 4aow_A 25 TEQMTLRGT-LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALS 103 (340)
T ss_dssp -CEEEEEEE-ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred CCceEEEEE-ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEE
Confidence 334444433 3599999999999998 6899999999999999985432 2356789999999999999999999
Q ss_pred EeCCCcEEEEEcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCC
Q 001287 94 ITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFP 172 (1107)
Q Consensus 94 ~s~d~~I~vWDl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~ 172 (1107)
++.|+.|++|+.......... .+...+..+.+++.++++++|+.||.+++|+.... ... .....+|.
T Consensus 104 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~--~~~--~~~~~~~~-------- 171 (340)
T 4aow_A 104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV--CKY--TVQDESHS-------- 171 (340)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC--EEE--EECSSSCS--------
T ss_pred EcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCC--ceE--EEEecccc--------
Confidence 999999999999999776665 56678899999999999999999999999986532 111 12233443
Q ss_pred CCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEE-eCCccccccccccCCCCCCCCccccCCCCCCCCCCc
Q 001287 173 LLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV-GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 251 (1107)
Q Consensus 173 ~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1107)
..|.+++|++......+++++.|+.|++||+.+++.... .+| ...
T Consensus 172 ----~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h------------------------------~~~ 217 (340)
T 4aow_A 172 ----EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGH------------------------------TGY 217 (340)
T ss_dssp ----SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCC------------------------------SSC
T ss_pred ----CcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCC------------------------------CCc
Confidence 789999998876677788999999999999999887654 445 778
Q ss_pred eeEEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 252 ISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 252 Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
|++++|. |+|++|++|+.||.|++||+.+.
T Consensus 218 v~~~~~s-~~~~~l~s~s~Dg~i~iwd~~~~ 247 (340)
T 4aow_A 218 LNTVTVS-PDGSLCASGGKDGQAMLWDLNEG 247 (340)
T ss_dssp EEEEEEC-TTSSEEEEEETTCEEEEEETTTT
T ss_pred EEEEEEC-CCCCEEEEEeCCCeEEEEEeccC
Confidence 9999985 99999999999999999998643
No 50
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.2e-31 Score=319.54 Aligned_cols=359 Identities=11% Similarity=0.099 Sum_probs=235.0
Q ss_pred eeecCCCCCeEEEEEcCCC---------CEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCc
Q 001287 29 AVHYGIPATASILAFDHIQ---------RLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNE 99 (1107)
Q Consensus 29 ~~~~G~~~~i~~lafsp~~---------~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~ 99 (1107)
...+.+++.|.+++|+|++ ++||+|+.++.. -..+|++..+++++.|++
T Consensus 127 ~~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~----------------------~~~~~~~~~laS~s~D~t 184 (524)
T 2j04_B 127 GFIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD----------------------EPLNEHLEMFDKEKHSSC 184 (524)
T ss_dssp EEEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------CEE
T ss_pred eEEEECCCceeEEEecccCCCCccCcCCeEEEEEEecccC----------------------CccchhhhhhccCCCCce
Confidence 3344568899999999987 899999977420 013788899999999999
Q ss_pred EEEEEcCCCeee----eee-ccCCCeEEEEEecC------CCEEEEEcCCCcEEEEEeecCCCc------eeecceeecc
Q 001287 100 IQVWSLESRSLA----CCL-KWESNITAFSVISG------SHFMYIGDENGLMSVIKYDADEGK------LFQLPYNISA 162 (1107)
Q Consensus 100 I~vWDl~s~~~~----~~~-~~~~~Vt~l~~~~~------~~~l~~g~~dg~V~vw~~d~~~~~------l~~~~~~i~~ 162 (1107)
|+|||+.+++.. ..+ .+.+.|.+++|+|+ +.+|++|+.||+|++|++...... +......+.+
T Consensus 185 I~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~ 264 (524)
T 2j04_B 185 IQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSL 264 (524)
T ss_dssp EEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECC
T ss_pred EEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEc
Confidence 999999887642 223 45688999999996 579999999999999998753211 0000122344
Q ss_pred cccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCE-E-EEEeCCccccccccccCCCCCCCCcccc
Q 001287 163 DALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ-I-IFVGGGKDLQLKDGVVDSPSEGDSTFLE 240 (1107)
Q Consensus 163 ~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~-~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 240 (1107)
|. ..|.+++|+| ++ +|++|+.||+|++||+.++. . ....+|
T Consensus 265 h~------------~~v~sv~~s~--~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H---------------------- 307 (524)
T 2j04_B 265 AD------------SLITTFDFLS--PT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVH---------------------- 307 (524)
T ss_dssp TT------------TCEEEEEESS--SS-EEEEEETTSEEEEEETTBCSSCSEEEECS----------------------
T ss_pred CC------------CCEEEEEecC--CC-eEEEEeCCCEEEEEECCCCCCceEEeecc----------------------
Confidence 43 7899999987 33 69999999999999998753 2 234555
Q ss_pred CCCCCCCCCCceeEEE-eecCCC-CEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecc
Q 001287 241 GISEHQPEEKEISALC-WASSSG-SILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTN 318 (1107)
Q Consensus 241 ~~~~~~~~~~~Vtsl~-w~spdg-~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~ 318 (1107)
...|++++ .++++| .+|++|+.||+|++||+.+..... .+
T Consensus 308 --------~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~-------------------------~~----- 349 (524)
T 2j04_B 308 --------DSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTK-------------------------TT----- 349 (524)
T ss_dssp --------SSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHC-------------------------EE-----
T ss_pred --------cccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccc-------------------------cc-----
Confidence 77899994 245888 899999999999999986431000 00
Q ss_pred cccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCC
Q 001287 319 KESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPG 398 (1107)
Q Consensus 319 ~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G 398 (1107)
.+
T Consensus 350 -------------~~----------------------------------------------------------------- 351 (524)
T 2j04_B 350 -------------VS----------------------------------------------------------------- 351 (524)
T ss_dssp -------------EE-----------------------------------------------------------------
T ss_pred -------------cc-----------------------------------------------------------------
Confidence 00
Q ss_pred eEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccc
Q 001287 399 QLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPL 478 (1107)
Q Consensus 399 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~ 478 (1107)
. .
T Consensus 352 ~------------------------------------------------------------------------------~ 353 (524)
T 2j04_B 352 R------------------------------------------------------------------------------F 353 (524)
T ss_dssp E------------------------------------------------------------------------------C
T ss_pred c------------------------------------------------------------------------------c
Confidence 0 0
Q ss_pred cCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCc
Q 001287 479 SGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFG 558 (1107)
Q Consensus 479 ~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg 558 (1107)
.+ ..+..++++|+++.+++|+.|++|++||+..+.+. ..+.+|...|++|+|+|++++|++|+.||
T Consensus 354 ~~---~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~-----------~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dg 419 (524)
T 2j04_B 354 RG---SNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAV-----------HPLVSRETTITAIGVSRLHPMVLAGSADG 419 (524)
T ss_dssp SC---CSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCC-----------EEEEECSSCEEEEECCSSCCBCEEEETTT
T ss_pred cc---CcccceEeCCCcCeEEEeCCCCcEEEEECcccccc-----------eeeecCCCceEEEEeCCCCCeEEEEECCC
Confidence 00 00112367788889999999999999999887754 33668999999999999999999999999
Q ss_pred eEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcC-CCeE
Q 001287 559 LVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN-LLSV 637 (1107)
Q Consensus 559 ~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~-~~~~ 637 (1107)
+|+||+........ +.... -..+...|++++|+|+++.+. ...+ +.+|+.. ++..
T Consensus 420 tv~lwd~~~~~~~~--------------------~~~~~-~~~~~~~v~~v~~sp~g~~~~-~~~~--~~~~~~~~~g~~ 475 (524)
T 2j04_B 420 SLIITNAARRLLHG--------------------IKNSS-ATQKSLRLWKWDYSIKDDKYR-IDSS--YEVYPLTVNDVS 475 (524)
T ss_dssp EEECCBSCSSTTTC--------------------C-------CCCCEEEECBCCSSSCEEE-ECCC--CCCCC-------
T ss_pred EEEEEechHhhccc--------------------cccCc-cceeeeEEEEeccCCCCCeEE-ccCC--ceecccccCCcc
Confidence 99999975531100 00000 001233578999999998553 2232 3344332 2333
Q ss_pred EEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCC
Q 001287 638 LFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1107)
Q Consensus 638 ~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~ 700 (1107)
+ ..+.+|..+|.+++|++... .+.+|++|+.||.|+||+..
T Consensus 476 ~---~~l~gh~~~V~~Vafsp~~~-------------------~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 476 K---AKIDAHGINITCTKWNETSA-------------------GGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp ---------CCCSCCCEEECCSTT-------------------TTTEEEEECTTSEEEEEECS
T ss_pred e---eeecCCCceEEEEECCCCCC-------------------ccHHHHhhccCceEEEEEcc
Confidence 3 36678999999999995421 15589999999999999964
No 51
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.3e-30 Score=303.58 Aligned_cols=374 Identities=13% Similarity=0.162 Sum_probs=258.2
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCcceeee-CCCCCCEEEEEEEe-CCCEEEEEeCCCcEEEEEcCC---Ce---eeee
Q 001287 42 AFDHIQRLLAIATLDGRIKVIGGDGIEGLLI-SPSQLPYKNLEFLQ-NQGFLISITNDNEIQVWSLES---RS---LACC 113 (1107)
Q Consensus 42 afsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~-~~h~~~V~~l~fs~-d~~~L~S~s~d~~I~vWDl~s---~~---~~~~ 113 (1107)
.|+|+++.++++. .|+..+..+..+ .+|.++|++++|+| ++.+|++++.|++|+|||+.+ +. ....
T Consensus 34 ~f~~~~~~~~~~~------~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 107 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT 107 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE
T ss_pred hcCCccccccccc------cccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeee
Confidence 4788888888765 388777666666 78899999999999 999999999999999999977 43 2344
Q ss_pred eccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecC-CCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCE
Q 001287 114 LKWESNITAFSVISGSHFMYIGDENGLMSVIKYDAD-EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1107)
Q Consensus 114 ~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~-~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ 192 (1107)
+.|...|++++|+|++++|++|+.||.|++|+++.. .++.... ...+........+..+...+.++.+.+..++.+
T Consensus 108 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (437)
T 3gre_A 108 YDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKF---LNCECIRKINLKNFGKNEYAVRMRAFVNEEKSL 184 (437)
T ss_dssp EECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEE---EEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEE
T ss_pred ccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeec---cccceeEEEEccCcccccCceEEEEEEcCCCCE
Confidence 468899999999999999999999999999999631 2333321 111111000000111336788888654457888
Q ss_pred EEEEECCCeEEEEEccCCEEEEEe-C--CccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEE
Q 001287 193 VLIAYENALVILWDVSEAQIIFVG-G--GKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1107)
Q Consensus 193 ll~~~~dg~V~vwdl~~~~~~~~~-g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~ 269 (1107)
|++++.||.|++||+.+++.+... + | ...|++++|. |++.+|++|+
T Consensus 185 l~~~~~d~~i~iwd~~~~~~~~~~~~~~h------------------------------~~~v~~~~~s-~~~~~l~s~~ 233 (437)
T 3gre_A 185 LVALTNLSRVIIFDIRTLERLQIIENSPR------------------------------HGAVSSICID-EECCVLILGT 233 (437)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCGG------------------------------GCCEEEEEEC-TTSCEEEEEE
T ss_pred EEEEeCCCeEEEEeCCCCeeeEEEccCCC------------------------------CCceEEEEEC-CCCCEEEEEc
Confidence 999999999999999998775543 3 3 6789999985 9999999999
Q ss_pred cCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcC
Q 001287 270 IDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLE 349 (1107)
Q Consensus 270 ~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~ 349 (1107)
.||.|++||+.++.. +..+..
T Consensus 234 ~dg~i~iwd~~~~~~-----------~~~~~~------------------------------------------------ 254 (437)
T 3gre_A 234 TRGIIDIWDIRFNVL-----------IRSWSF------------------------------------------------ 254 (437)
T ss_dssp TTSCEEEEETTTTEE-----------EEEEBC------------------------------------------------
T ss_pred CCCeEEEEEcCCccE-----------EEEEec------------------------------------------------
Confidence 999999999974310 000000
Q ss_pred ccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcc
Q 001287 350 WSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGV 429 (1107)
Q Consensus 350 ~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (1107)
.
T Consensus 255 ----------------~--------------------------------------------------------------- 255 (437)
T 3gre_A 255 ----------------G--------------------------------------------------------------- 255 (437)
T ss_dssp ----------------T---------------------------------------------------------------
T ss_pred ----------------C---------------------------------------------------------------
Confidence 0
Q ss_pred cccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEE
Q 001287 430 IPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRI 509 (1107)
Q Consensus 430 ~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIri 509 (1107)
+..+|++..+ ...+++++.+|++|+.||+|++
T Consensus 256 ---~~~~v~~~~~---------------------------------------------~~~~s~~~~~l~s~~~dg~i~i 287 (437)
T 3gre_A 256 ---DHAPITHVEV---------------------------------------------CQFYGKNSVIVVGGSSKTFLTI 287 (437)
T ss_dssp ---TCEEEEEEEE---------------------------------------------CTTTCTTEEEEEEESTTEEEEE
T ss_pred ---CCCceEEEEe---------------------------------------------ccccCCCccEEEEEcCCCcEEE
Confidence 0000111110 0045677789999999999999
Q ss_pred EeCCCCceeEEEeecc-cee------------eeeecC--CCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccc
Q 001287 510 WDATYPVFKLICALDA-EVQ------------GIEVAG--SRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNF 574 (1107)
Q Consensus 510 Wd~~~~~l~~~~~l~~-~~~------------~~~l~~--h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~ 574 (1107)
||+..+.+...+.-.. .+. ...+.+ |...|++++|+ ++++|++|+.||.|++|++....
T Consensus 288 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~----- 361 (437)
T 3gre_A 288 WNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELS----- 361 (437)
T ss_dssp EETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGG-----
T ss_pred EEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcc-----
Confidence 9999887654443211 110 011233 88899999999 88999999999999999998752
Q ss_pred eeeccCcCcceecccCCcceeEEEEeec---CcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCce
Q 001287 575 LFVLETKSEVHALPEGKISLCRAVFSLV---NSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPI 651 (1107)
Q Consensus 575 ~~~~~~~~~~~~~~~~~g~~~~~~~~~h---~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V 651 (1107)
+...+..| ...+..+.+++...+++.+ |+....... .....|...|
T Consensus 362 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~---~~~~~h~~~I 410 (437)
T 3gre_A 362 --------------------SSKAVISPSRFSDVFIPTQVTANLTMLLRK--------MKRTSTHSV---DDSLYHHDII 410 (437)
T ss_dssp --------------------GCEEEECC--CCCEEEEEEEETTEEEEEEE--------CC----------------CCCE
T ss_pred --------------------cceEEecccccCceEEEEEeecceEEEEEe--------ccccccccc---Ccccccccce
Confidence 23344443 4456677777777666555 222222222 3445699999
Q ss_pred EEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEe
Q 001287 652 ISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 698 (1107)
Q Consensus 652 ~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d 698 (1107)
.+++|.+. +++.+|++|+.||.|++|.
T Consensus 411 ~~i~~~~~--------------------~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 411 NSISTCEV--------------------DETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEEES--------------------SSSEEEEEEETTSCEEEEC
T ss_pred eeEeeecc--------------------CCceEEEEEcCCceEEEeC
Confidence 99999953 2367899999999999995
No 52
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=1.1e-28 Score=280.25 Aligned_cols=312 Identities=15% Similarity=0.186 Sum_probs=225.9
Q ss_pred EEEEEcCCC--eeeeee-ccCCCeEEEEEecC-CCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCC
Q 001287 100 IQVWSLESR--SLACCL-KWESNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLS 175 (1107)
Q Consensus 100 I~vWDl~s~--~~~~~~-~~~~~Vt~l~~~~~-~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~ 175 (1107)
+.++...+. .+..++ .|.+.|++++|+|+ +++|++|+.||+|+||++.............+.+|.
T Consensus 18 ~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~----------- 86 (340)
T 4aow_A 18 LYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS----------- 86 (340)
T ss_dssp --------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCS-----------
T ss_pred EEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCC-----------
Confidence 444444444 344444 79999999999998 589999999999999999864332221113355555
Q ss_pred CCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEE
Q 001287 176 HQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 255 (1107)
Q Consensus 176 ~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl 255 (1107)
..|.+++|+| ++.+|++++.|+.|++|+............ ....+...
T Consensus 87 -~~V~~~~~s~--dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~ 134 (340)
T 4aow_A 87 -HFVSDVVISS--DGQFALSGSWDGTLRLWDLTTGTTTRRFVG-----------------------------HTKDVLSV 134 (340)
T ss_dssp -SCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEEC-----------------------------CSSCEEEE
T ss_pred -CCEEEEEECC--CCCEEEEEcccccceEEeecccceeeeecC-----------------------------CCCceeEE
Confidence 8899999988 788999999999999999999876554322 04556667
Q ss_pred EeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCC
Q 001287 256 CWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGD 335 (1107)
Q Consensus 256 ~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~ 335 (1107)
+|. +++..|++|+.||.+++||...... ..... ..
T Consensus 135 ~~~-~~~~~l~s~s~d~~~~~~d~~~~~~------------~~~~~---------------------~~----------- 169 (340)
T 4aow_A 135 AFS-SDNRQIVSGSRDKTIKLWNTLGVCK------------YTVQD---------------------ES----------- 169 (340)
T ss_dssp EEC-TTSSCEEEEETTSCEEEECTTSCEE------------EEECS---------------------SS-----------
T ss_pred EEe-ecCccceeecCCCeEEEEEeCCCce------------EEEEe---------------------cc-----------
Confidence 764 9999999999999999999853210 00000 00
Q ss_pred CCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeeccc
Q 001287 336 EIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQ 415 (1107)
Q Consensus 336 ~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~ 415 (1107)
T Consensus 170 -------------------------------------------------------------------------------- 169 (340)
T 4aow_A 170 -------------------------------------------------------------------------------- 169 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCC
Q 001287 416 EKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVD 495 (1107)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~ 495 (1107)
+...+.+..+ ......
T Consensus 170 -----------------~~~~v~~~~~-----------------------------------------------~~~~~~ 185 (340)
T 4aow_A 170 -----------------HSEWVSCVRF-----------------------------------------------SPNSSN 185 (340)
T ss_dssp -----------------CSSCEEEEEE-----------------------------------------------CSCSSS
T ss_pred -----------------ccCcccceEE-----------------------------------------------ccCCCC
Confidence 0000000110 011222
Q ss_pred cEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccce
Q 001287 496 RVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFL 575 (1107)
Q Consensus 496 ~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~ 575 (1107)
.++++++.|++|++||+..+.+. ..+.+|..+|++|+|+|++++|++|+.||.|+||++...
T Consensus 186 ~~~~s~~~d~~i~i~d~~~~~~~-----------~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~------- 247 (340)
T 4aow_A 186 PIIVSCGWDKLVKVWNLANCKLK-----------TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG------- 247 (340)
T ss_dssp CEEEEEETTSCEEEEETTTTEEE-----------EEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT-------
T ss_pred cEEEEEcCCCEEEEEECCCCcee-----------eEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC-------
Confidence 37899999999999999988765 457789999999999999999999999999999998875
Q ss_pred eeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEee------cCCCCCC
Q 001287 576 FVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTD------DISGSSS 649 (1107)
Q Consensus 576 ~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~------~~~~h~~ 649 (1107)
.++..+ .+...|++++|+|++.++ +++.|+.|+|||++++..+.... ...+|..
T Consensus 248 ------------------~~~~~~-~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~ 307 (340)
T 4aow_A 248 ------------------KHLYTL-DGGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP 307 (340)
T ss_dssp ------------------EEEEEE-ECSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCC
T ss_pred ------------------ceeeee-cCCceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCC
Confidence 233434 355689999999998655 55678999999999887765432 2346899
Q ss_pred ceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcc
Q 001287 650 PIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSEN 703 (1107)
Q Consensus 650 ~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~ 703 (1107)
.|.+++|+ |++.+|++|+.||.|+|||.++|.
T Consensus 308 ~v~~l~~s----------------------~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 308 QCTSLAWS----------------------ADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CEEEEEEC----------------------TTSSEEEEEETTSCEEEEEEEC--
T ss_pred CEEEEEEC----------------------CCCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999999 668899999999999999999874
No 53
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.9e-28 Score=281.15 Aligned_cols=228 Identities=12% Similarity=0.102 Sum_probs=183.1
Q ss_pred CcccccccceeeeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcc-eeeeCCCCCCEEEEEEEeCCCEEEEEeC
Q 001287 18 SLTAADLNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITN 96 (1107)
Q Consensus 18 ~l~~~~~~~~~~~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~L~S~s~ 96 (1107)
......-..+.....||...|++++|+|++++||+|+.||.|+||+....+ ...+..|..+|.+++|+|++.+|++++.
T Consensus 15 ~~~~~G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 94 (369)
T 3zwl_B 15 NLYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSA 94 (369)
T ss_dssp CCCSSCCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ceEEeccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeC
Confidence 333444456666778999999999999999999999999999999986544 4466779999999999999999999999
Q ss_pred CCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCC-----CcEEEEEeecCCCceeecceeecccccccccCC
Q 001287 97 DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDEN-----GLMSVIKYDADEGKLFQLPYNISADALSEKAGF 171 (1107)
Q Consensus 97 d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~d-----g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~ 171 (1107)
|+.|++||+.+++.+..+.+...|++++|+|+++++++++.+ |.|++|++.......... .......... .
T Consensus 95 dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~--~~~~~~~~~~--~ 170 (369)
T 3zwl_B 95 DYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELT--KVSEEPIHKI--I 170 (369)
T ss_dssp TTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEE--EECSSCSEEE--E
T ss_pred CCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeec--ccccceeeec--c
Confidence 999999999999999888899999999999999999999999 999999998643221100 0000000000 0
Q ss_pred CCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccC-CEEEE-EeCCccccccccccCCCCCCCCccccCCCCCCCCC
Q 001287 172 PLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE-AQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEE 249 (1107)
Q Consensus 172 ~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~-~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1107)
.......+.+++|+| ++..|++++.||.|++||+.+ .+... +..| .
T Consensus 171 ~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------------------------~ 218 (369)
T 3zwl_B 171 THEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH------------------------------E 218 (369)
T ss_dssp CCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECC------------------------------S
T ss_pred CCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecC------------------------------C
Confidence 011113899999988 688899999999999999998 55543 3344 6
Q ss_pred CceeEEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 250 KEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 250 ~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
..|++++|. |++.+|++++.||.|++||+.+.
T Consensus 219 ~~v~~~~~~-~~~~~l~~~~~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 219 KSISDMQFS-PDLTYFITSSRDTNSFLVDVSTL 250 (369)
T ss_dssp SCEEEEEEC-TTSSEEEEEETTSEEEEEETTTC
T ss_pred CceeEEEEC-CCCCEEEEecCCceEEEEECCCC
Confidence 789999986 99999999999999999999754
No 54
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=1.6e-28 Score=290.99 Aligned_cols=313 Identities=18% Similarity=0.267 Sum_probs=246.6
Q ss_pred ecCCCCCe-EEEEEcCCCCEEEEEECCCcEEEEeCCCcc-eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCC
Q 001287 31 HYGIPATA-SILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR 108 (1107)
Q Consensus 31 ~~G~~~~i-~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~ 108 (1107)
..||...+ +|+.+ ++++||+|+.||.|+||+....+ .....+|..+|.+++|+ +.+|++++.|++|++||+.++
T Consensus 114 l~~h~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~ 189 (445)
T 2ovr_B 114 LKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETG 189 (445)
T ss_dssp EECSTTSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT
T ss_pred ecccCCCcEEEEEE--cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcC
Confidence 45777764 55555 58999999999999999996554 44667899999999998 468999999999999999999
Q ss_pred eeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccC
Q 001287 109 SLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1107)
Q Consensus 109 ~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~ 187 (1107)
+.+..+ .|...|++++++ ++++++|+.||.|++|++.. ++... .+.+|. ..|.++.|
T Consensus 190 ~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~--~~~~~---~~~~~~------------~~v~~~~~--- 247 (445)
T 2ovr_B 190 ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIET--GQCLH---VLMGHV------------AAVRCVQY--- 247 (445)
T ss_dssp EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSS--CCEEE---EEECCS------------SCEEEEEE---
T ss_pred cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCC--CcEEE---EEcCCc------------ccEEEEEE---
Confidence 888777 588899999995 67899999999999999875 34432 355555 78999999
Q ss_pred CCCCEEEEEECCCeEEEEEccCCEEEEEe-CCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEE
Q 001287 188 SSGNRVLIAYENALVILWDVSEAQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILA 266 (1107)
Q Consensus 188 ~~~~~ll~~~~dg~V~vwdl~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~ 266 (1107)
++.++++++.||.|++||+.+++.+... +| ...|++++| ++.+|+
T Consensus 248 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------------------------~~~v~~~~~---~~~~l~ 293 (445)
T 2ovr_B 248 -DGRRVVSGAYDFMVKVWDPETETCLHTLQGH------------------------------TNRVYSLQF---DGIHVV 293 (445)
T ss_dssp -CSSCEEEEETTSCEEEEEGGGTEEEEEECCC------------------------------SSCEEEEEE---CSSEEE
T ss_pred -CCCEEEEEcCCCEEEEEECCCCcEeEEecCC------------------------------CCceEEEEE---CCCEEE
Confidence 4667999999999999999998776543 34 678999996 689999
Q ss_pred EEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEE
Q 001287 267 VGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVL 346 (1107)
Q Consensus 267 sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl 346 (1107)
+|+.||.|++||+.+++. +. .+ .+
T Consensus 294 ~~~~d~~i~i~d~~~~~~-----------~~--------------~~-------------------~~------------ 317 (445)
T 2ovr_B 294 SGSLDTSIRVWDVETGNC-----------IH--------------TL-------------------TG------------ 317 (445)
T ss_dssp EEETTSCEEEEETTTCCE-----------EE--------------EE-------------------CC------------
T ss_pred EEeCCCeEEEEECCCCCE-----------EE--------------EE-------------------cC------------
Confidence 999999999999975410 00 00 00
Q ss_pred EcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccC
Q 001287 347 SLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEF 426 (1107)
Q Consensus 347 ~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 426 (1107)
T Consensus 318 -------------------------------------------------------------------------------- 317 (445)
T 2ovr_B 318 -------------------------------------------------------------------------------- 317 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCc
Q 001287 427 PGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGS 506 (1107)
Q Consensus 427 ~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~Dgt 506 (1107)
+...+. .+..+++++++|+.||+
T Consensus 318 ------~~~~v~---------------------------------------------------~~~~~~~~l~~~~~dg~ 340 (445)
T 2ovr_B 318 ------HQSLTS---------------------------------------------------GMELKDNILVSGNADST 340 (445)
T ss_dssp ------CCSCEE---------------------------------------------------EEEEETTEEEEEETTSC
T ss_pred ------CcccEE---------------------------------------------------EEEEeCCEEEEEeCCCe
Confidence 000000 11122348999999999
Q ss_pred EEEEeCCCCceeEEEeeccceeeeeec---CCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCc
Q 001287 507 VRIWDATYPVFKLICALDAEVQGIEVA---GSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSE 583 (1107)
Q Consensus 507 IriWd~~~~~l~~~~~l~~~~~~~~l~---~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~ 583 (1107)
|++||+..+.+. ..+. .|..+|++++|+ +++|++|+.||.|++|++....
T Consensus 341 i~vwd~~~~~~~-----------~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~-------------- 393 (445)
T 2ovr_B 341 VKIWDIKTGQCL-----------QTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGE-------------- 393 (445)
T ss_dssp EEEEETTTCCEE-----------EEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC--------------
T ss_pred EEEEECCCCcEE-----------EEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCc--------------
Confidence 999999887754 2233 488899999995 6899999999999999998752
Q ss_pred ceecccCCcceeEEEE-----eecCcCEEEEEEcCCCCEEEEEeCCCe----EEEEEcCC
Q 001287 584 VHALPEGKISLCRAVF-----SLVNSPVRALQFTSSGAKLAVGFECGR----VAVLDMNL 634 (1107)
Q Consensus 584 ~~~~~~~~g~~~~~~~-----~~h~~~Vt~la~sp~~~~la~Gs~dg~----V~iwd~~~ 634 (1107)
.+..+ ..|.+.|++++|+|++.++|+|+.||+ |.|||+..
T Consensus 394 -----------~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 394 -----------FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp -----------EEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred -----------eeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 23333 367899999999999999999999998 99999875
No 55
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=5.2e-29 Score=288.78 Aligned_cols=202 Identities=15% Similarity=0.186 Sum_probs=171.4
Q ss_pred eecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCcceee-e--CCCCCCEEEEEEEe-CCCEEEEEeCCCcEEEEE
Q 001287 30 VHYGIPATASILAFDHIQ-RLLAIATLDGRIKVIGGDGIEGLL-I--SPSQLPYKNLEFLQ-NQGFLISITNDNEIQVWS 104 (1107)
Q Consensus 30 ~~~G~~~~i~~lafsp~~-~~LA~Gs~dg~I~iw~~~~~~~~~-~--~~h~~~V~~l~fs~-d~~~L~S~s~d~~I~vWD 104 (1107)
...||...|.+++|+|++ ++||+|+.||.|+||+....+... . .+|..+|.+++|+| ++.+|++++.|+.|++||
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 147 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD 147 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEE
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEE
Confidence 336899999999999999 999999999999999997554432 2 36999999999999 778999999999999999
Q ss_pred cCCCeeeeeec---cCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEE
Q 001287 105 LESRSLACCLK---WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVG 181 (1107)
Q Consensus 105 l~s~~~~~~~~---~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~ 181 (1107)
+.+........ +...|++++|+|++++|++|+.||.|++|+++ ++.. ..+..|. ..|.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~---~~~~~h~------------~~v~~ 209 (383)
T 3ei3_B 148 FSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD---GHEI---FKEKLHK------------AKVTH 209 (383)
T ss_dssp TTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT---SCEE---EEEECSS------------SCEEE
T ss_pred CCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC---CCEE---EEeccCC------------CcEEE
Confidence 99765544443 34789999999999999999999999999984 3443 2355565 78999
Q ss_pred EEcccCCCCC-EEEEEECCCeEEEEEccC----CEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEE
Q 001287 182 VLPHPNSSGN-RVLIAYENALVILWDVSE----AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALC 256 (1107)
Q Consensus 182 v~f~P~~~~~-~ll~~~~dg~V~vwdl~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~ 256 (1107)
++|+| ++. +|++++.|+.|++||+.+ +..+...+| ...|++++
T Consensus 210 ~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~------------------------------~~~v~~~~ 257 (383)
T 3ei3_B 210 AEFNP--RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPH------------------------------EKPVNAAY 257 (383)
T ss_dssp EEECS--SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEEC------------------------------SSCEEEEE
T ss_pred EEECC--CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecC------------------------------CCceEEEE
Confidence 99998 455 799999999999999998 566665566 77899999
Q ss_pred eecC-CCCEEEEEEcCCcEEEEeCCCC
Q 001287 257 WASS-SGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 257 w~sp-dg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
|. | +|.+|++++.||.|++||+.+.
T Consensus 258 ~s-~~~~~~l~~~~~d~~i~iwd~~~~ 283 (383)
T 3ei3_B 258 FN-PTDSTKLLTTDQRNEIRVYSSYDW 283 (383)
T ss_dssp EC-TTTSCEEEEEESSSEEEEEETTBT
T ss_pred Ec-CCCCCEEEEEcCCCcEEEEECCCC
Confidence 86 8 9999999999999999999765
No 56
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=1.4e-28 Score=293.03 Aligned_cols=343 Identities=14% Similarity=0.192 Sum_probs=247.3
Q ss_pred eeeCCCCCC-EEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEee
Q 001287 70 LLISPSQLP-YKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1107)
Q Consensus 70 ~~~~~h~~~-V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d 147 (1107)
..+.+|..+ +.++.| ++.+|++++.|++|++||+.+++.+..+ .|.+.|++++|++++ ++++|+.||+|++|+++
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~ 191 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK 191 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETT
T ss_pred EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC
Confidence 356678776 466666 5679999999999999999999988877 588999999999888 99999999999999987
Q ss_pred cCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccc
Q 001287 148 ADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGV 227 (1107)
Q Consensus 148 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~ 227 (1107)
. ++.. ..+.+|. ..|.++.|+|..++.++++++.||.|++||+.+............... .
T Consensus 192 ~--~~~~---~~~~~h~------------~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~--~ 252 (464)
T 3v7d_B 192 K--GCCT---HVFEGHN------------STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL--V 252 (464)
T ss_dssp T--TEEE---EEECCCS------------SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSE--E
T ss_pred C--CcEE---EEECCCC------------CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcce--E
Confidence 4 4444 2356665 889999999766788899999999999999988653321111000000 0
Q ss_pred cCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCc
Q 001287 228 VDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERR 307 (1107)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 307 (1107)
...|.... -.......+...|.++. +++.+|++|+.||.|++||+.+... +
T Consensus 253 ~~~~~~~~----~~~~~~~~~~~~v~~~~---~~~~~l~~~~~d~~i~vwd~~~~~~-----------~----------- 303 (464)
T 3v7d_B 253 FHTPEENP----YFVGVLRGHMASVRTVS---GHGNIVVSGSYDNTLIVWDVAQMKC-----------L----------- 303 (464)
T ss_dssp ESCGGGCT----TEEEEECCCSSCEEEEE---EETTEEEEEETTSCEEEEETTTTEE-----------E-----------
T ss_pred eeccCCCe----EEEEEccCccceEEEEc---CCCCEEEEEeCCCeEEEEECCCCcE-----------E-----------
Confidence 00000000 00000111245566664 6799999999999999999864310 0
Q ss_pred cceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCC
Q 001287 308 LPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNH 387 (1107)
Q Consensus 308 ~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~ 387 (1107)
..+ .+
T Consensus 304 ---~~~-------------------~~----------------------------------------------------- 308 (464)
T 3v7d_B 304 ---YIL-------------------SG----------------------------------------------------- 308 (464)
T ss_dssp ---EEE-------------------CC-----------------------------------------------------
T ss_pred ---EEe-------------------cC-----------------------------------------------------
Confidence 000 00
Q ss_pred cceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCC
Q 001287 388 KADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSS 467 (1107)
Q Consensus 388 ~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (1107)
|..
T Consensus 309 ---------------------------------------------~~~-------------------------------- 311 (464)
T 3v7d_B 309 ---------------------------------------------HTD-------------------------------- 311 (464)
T ss_dssp ---------------------------------------------CSS--------------------------------
T ss_pred ---------------------------------------------CCC--------------------------------
Confidence 000
Q ss_pred CCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeC
Q 001287 468 HTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFI 547 (1107)
Q Consensus 468 ~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd 547 (1107)
.+..++++++++.+++|+.||+|++||+.++.+. ..+.+|...|++++|+
T Consensus 312 -----------------~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~-----------~~~~~h~~~v~~~~~~-- 361 (464)
T 3v7d_B 312 -----------------RIYSTIYDHERKRCISASMDTTIRIWDLENGELM-----------YTLQGHTALVGLLRLS-- 361 (464)
T ss_dssp -----------------CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE-----------EEECCCSSCEEEEEEC--
T ss_pred -----------------CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE-----------EEEeCCCCcEEEEEEc--
Confidence 0011245567779999999999999999988755 4577899999999997
Q ss_pred CCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeE
Q 001287 548 NSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRV 627 (1107)
Q Consensus 548 ~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V 627 (1107)
+.+|++++.||.|++|++.... ... ...|...+..++|+++++++++|+ ||.|
T Consensus 362 ~~~l~s~s~dg~v~vwd~~~~~-------------------------~~~-~~~~~~~~~~~~~~~~~~~l~~~~-dg~i 414 (464)
T 3v7d_B 362 DKFLVSAAADGSIRGWDANDYS-------------------------RKF-SYHHTNLSAITTFYVSDNILVSGS-ENQF 414 (464)
T ss_dssp SSEEEEEETTSEEEEEETTTCC-------------------------EEE-EEECTTCCCEEEEEECSSEEEEEE-TTEE
T ss_pred CCEEEEEeCCCcEEEEECCCCc-------------------------eee-eecCCCCccEEEEEeCCCEEEEec-CCeE
Confidence 6899999999999999997741 111 224777888999999999999999 8999
Q ss_pred EEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEE
Q 001287 628 AVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIV 697 (1107)
Q Consensus 628 ~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~ 697 (1107)
+|||+.+++++.. .+.+|..+|.+++|+. +.++++++.||.+++|
T Consensus 415 ~iwd~~~g~~~~~--~~~~~~~~v~~v~~~~-----------------------~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 415 NIYNLRSGKLVHA--NILKDADQIWSVNFKG-----------------------KTLVAAVEKDGQSFLE 459 (464)
T ss_dssp EEEETTTCCEEES--CTTTTCSEEEEEEEET-----------------------TEEEEEEEETTEEEEE
T ss_pred EEEECCCCcEEeh--hhccCCCcEEEEEecC-----------------------CEEEEEEEeCCeEEEE
Confidence 9999999998832 3567999999999971 4556677777766554
No 57
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=7e-29 Score=285.69 Aligned_cols=163 Identities=10% Similarity=0.115 Sum_probs=137.4
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCc---ceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCC
Q 001287 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI---EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR 108 (1107)
Q Consensus 32 ~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~---~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~ 108 (1107)
..+...|++++|+|++++||+|+.||.|+||+.... .......|..+|.+++|+|++.+|++++.|+.|++||+.++
T Consensus 5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 84 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR 84 (372)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC
Confidence 347889999999999999999999999999999766 44566789999999999999999999999999999999998
Q ss_pred eeeee---eccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcc
Q 001287 109 SLACC---LKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1107)
Q Consensus 109 ~~~~~---~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~ 185 (1107)
+.... ..+...|++++|+|++++|++|+.+|.|++|+++......... .....|. ..|.+++|+
T Consensus 85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~~~~~~------------~~i~~~~~~ 151 (372)
T 1k8k_C 85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK-HIKKPIR------------STVLSLDWH 151 (372)
T ss_dssp EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE-EECTTCC------------SCEEEEEEC
T ss_pred eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeee-eeecccC------------CCeeEEEEc
Confidence 75443 3678899999999999999999999999999998643211110 1112333 789999998
Q ss_pred cCCCCCEEEEEECCCeEEEEEccC
Q 001287 186 PNSSGNRVLIAYENALVILWDVSE 209 (1107)
Q Consensus 186 P~~~~~~ll~~~~dg~V~vwdl~~ 209 (1107)
| ++.+|++++.||.|++||+..
T Consensus 152 ~--~~~~l~~~~~dg~i~~~d~~~ 173 (372)
T 1k8k_C 152 P--NSVLLAAGSCDFKCRIFSAYI 173 (372)
T ss_dssp T--TSSEEEEEETTSCEEEEECCC
T ss_pred C--CCCEEEEEcCCCCEEEEEccc
Confidence 8 678899999999999999864
No 58
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=2.6e-28 Score=284.33 Aligned_cols=220 Identities=17% Similarity=0.224 Sum_probs=173.6
Q ss_pred eeeecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCCCcceeee--------------CCCCCCEEEEEEEe-CCCEE
Q 001287 28 IAVHYGIPATASILAFDH-IQRLLAIATLDGRIKVIGGDGIEGLLI--------------SPSQLPYKNLEFLQ-NQGFL 91 (1107)
Q Consensus 28 ~~~~~G~~~~i~~lafsp-~~~~LA~Gs~dg~I~iw~~~~~~~~~~--------------~~h~~~V~~l~fs~-d~~~L 91 (1107)
.....+|.+.|++++|+| ++++||+|+.||.|+||+....+.... ..|..+|.+++|+| ++.+|
T Consensus 36 ~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 115 (408)
T 4a11_B 36 RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF 115 (408)
T ss_dssp EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence 344567999999999999 999999999999999999965543311 25999999999999 77799
Q ss_pred EEEeCCCcEEEEEcCCCeeeeeeccCCCeEEEEEecCC---CEEEEEcCCCcEEEEEeecCCCceeecceeecccccccc
Q 001287 92 ISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGS---HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEK 168 (1107)
Q Consensus 92 ~S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~---~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~ 168 (1107)
++++.|+.|++||+.+++....+.+...+.++.+.+.+ .++++|+.+|.|++|++.. +... ..+..|.
T Consensus 116 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~--~~~~---~~~~~~~---- 186 (408)
T 4a11_B 116 TSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS--GSCS---HILQGHR---- 186 (408)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS--SCCC---EEECCCC----
T ss_pred EEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC--ccee---eeecCCC----
Confidence 99999999999999999999999899999999999855 4999999999999999875 3333 2355555
Q ss_pred cCCCCCCCCCeEEEEcccCCCCC-EEEEEECCCeEEEEEccCCEE-EEEe-CCccccccccccCCCCCCCCccccCCCCC
Q 001287 169 AGFPLLSHQPVVGVLPHPNSSGN-RVLIAYENALVILWDVSEAQI-IFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEH 245 (1107)
Q Consensus 169 ~~~~~~~~~~V~~v~f~P~~~~~-~ll~~~~dg~V~vwdl~~~~~-~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1107)
..|.+++|+| ++. .+++++.||.|++||+..... .... .+.... ........
T Consensus 187 --------~~v~~~~~~~--~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---------------~~~~~~~~ 241 (408)
T 4a11_B 187 --------QEILAVSWSP--RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK---------------SQAVESAN 241 (408)
T ss_dssp --------SCEEEEEECS--SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS---------------CCCTTTSS
T ss_pred --------CcEEEEEECC--CCCcEEEEEcCCCcEEEEECCCCCccccccccccccc---------------ceeecccc
Confidence 7899999998 455 588999999999999987642 2221 110000 00001111
Q ss_pred CCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 246 QPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 246 ~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
..+...|++++|. |+|.+|++++.||.|++||+.++
T Consensus 242 ~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~ 277 (408)
T 4a11_B 242 TAHNGKVNGLCFT-SDGLHLLTVGTDNRMRLWNSSNG 277 (408)
T ss_dssp CSCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTC
T ss_pred ccccCceeEEEEc-CCCCEEEEecCCCeEEEEECCCC
Confidence 2237789999986 99999999999999999999865
No 59
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=7.3e-29 Score=283.58 Aligned_cols=206 Identities=15% Similarity=0.174 Sum_probs=164.7
Q ss_pred eecCCCCCeEEEEEcCCCC-EEEEEEC---CCcEEEEeCCCcce--eeeCCCCCCEEEEEEEeC---CCEEEEEeCCCcE
Q 001287 30 VHYGIPATASILAFDHIQR-LLAIATL---DGRIKVIGGDGIEG--LLISPSQLPYKNLEFLQN---QGFLISITNDNEI 100 (1107)
Q Consensus 30 ~~~G~~~~i~~lafsp~~~-~LA~Gs~---dg~I~iw~~~~~~~--~~~~~h~~~V~~l~fs~d---~~~L~S~s~d~~I 100 (1107)
...||...|.+++|+|++. ++|+|+. ||.|+||+....+. ....+|..+|.+++|+|+ +.+|++++.|+.|
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 92 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNL 92 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCE
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeE
Confidence 3468999999999999995 5566765 99999999976554 345579999999999998 6999999999999
Q ss_pred EEEEcCCCe-eeeee-ccCCCeEEEEE------ecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCC
Q 001287 101 QVWSLESRS-LACCL-KWESNITAFSV------ISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFP 172 (1107)
Q Consensus 101 ~vWDl~s~~-~~~~~-~~~~~Vt~l~~------~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~ 172 (1107)
++||+.+++ .+..+ .|...|+++.+ ++++++|++|+.||.|++|++......+. .+..+.
T Consensus 93 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~----~~~~~~-------- 160 (357)
T 3i2n_A 93 HIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA----NMEPVQ-------- 160 (357)
T ss_dssp EEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSE----EECCCT--------
T ss_pred EEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcce----eccccC--------
Confidence 999999887 55555 68889999955 67899999999999999999875321121 132222
Q ss_pred CCCCCCeEEEE----cccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCC
Q 001287 173 LLSHQPVVGVL----PHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPE 248 (1107)
Q Consensus 173 ~~~~~~V~~v~----f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1107)
......|.++. |+| ++..+++++.||.|++||+.+++......|
T Consensus 161 ~~~~~~v~~~~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~------------------------------ 208 (357)
T 3i2n_A 161 GENKRDCWTVAFGNAYNQ--EERVVCAGYDNGDIKLFDLRNMALRWETNI------------------------------ 208 (357)
T ss_dssp TSCCCCEEEEEEECCCC---CCCEEEEEETTSEEEEEETTTTEEEEEEEC------------------------------
T ss_pred CCCCCceEEEEEEeccCC--CCCEEEEEccCCeEEEEECccCceeeecCC------------------------------
Confidence 00124788888 555 688899999999999999999988766665
Q ss_pred CCceeEEEeecC---CCCEEEEEEcCCcEEEEeCC
Q 001287 249 EKEISALCWASS---SGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 249 ~~~Vtsl~w~sp---dg~~l~sg~~dG~I~lWd~~ 280 (1107)
...|++++|. | ++.+|++|+.||.|++||+.
T Consensus 209 ~~~v~~~~~~-~~~~~~~~l~~~~~dg~i~i~d~~ 242 (357)
T 3i2n_A 209 KNGVCSLEFD-RKDISMNKLVATSLEGKFHVFDMR 242 (357)
T ss_dssp SSCEEEEEES-CSSSSCCEEEEEESTTEEEEEEEE
T ss_pred CCceEEEEcC-CCCCCCCEEEEECCCCeEEEEeCc
Confidence 6789999986 8 89999999999999999974
No 60
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=5e-28 Score=286.76 Aligned_cols=318 Identities=16% Similarity=0.233 Sum_probs=250.3
Q ss_pred eeeCCCCCCE-EEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEee
Q 001287 70 LLISPSQLPY-KNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1107)
Q Consensus 70 ~~~~~h~~~V-~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d 147 (1107)
..+.+|.+.| ++ +++++.+|++++.|+.|++||+.+++.+..+ .|.+.|++++++ ++++++|+.||.|++|+++
T Consensus 112 ~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 112 KVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE 187 (445)
T ss_dssp EEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred EEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence 3566788865 55 4556889999999999999999999888777 688999999997 6799999999999999986
Q ss_pred cCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEE-EeCCcccccccc
Q 001287 148 ADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDG 226 (1107)
Q Consensus 148 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~-~~g~~~~~~~~~ 226 (1107)
. ++.. ..+.+|. ..|.++.|+ +..+++++.||.|++||+.+++... +.+|
T Consensus 188 ~--~~~~---~~~~~h~------------~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-------- 238 (445)
T 2ovr_B 188 T--GECI---HTLYGHT------------STVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGH-------- 238 (445)
T ss_dssp T--TEEE---EEECCCS------------SCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECC--------
T ss_pred c--CcEE---EEECCCC------------CcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCC--------
Confidence 4 4444 3366665 789999994 4569999999999999999887654 3445
Q ss_pred ccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccC
Q 001287 227 VVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAER 306 (1107)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 306 (1107)
...|++++| ++..|++|+.||.|++||+.++.. +
T Consensus 239 ----------------------~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~-----------~---------- 272 (445)
T 2ovr_B 239 ----------------------VAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETC-----------L---------- 272 (445)
T ss_dssp ----------------------SSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEE-----------E----------
T ss_pred ----------------------cccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcE-----------e----------
Confidence 678999996 688999999999999999864310 0
Q ss_pred ccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCC
Q 001287 307 RLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGN 386 (1107)
Q Consensus 307 ~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~ 386 (1107)
..+ .+
T Consensus 273 ----~~~-------------------~~---------------------------------------------------- 277 (445)
T 2ovr_B 273 ----HTL-------------------QG---------------------------------------------------- 277 (445)
T ss_dssp ----EEE-------------------CC----------------------------------------------------
T ss_pred ----EEe-------------------cC----------------------------------------------------
Confidence 000 00
Q ss_pred CcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccC
Q 001287 387 HKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHS 466 (1107)
Q Consensus 387 ~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1107)
+...+++.
T Consensus 278 ----------------------------------------------~~~~v~~~-------------------------- 285 (445)
T 2ovr_B 278 ----------------------------------------------HTNRVYSL-------------------------- 285 (445)
T ss_dssp ----------------------------------------------CSSCEEEE--------------------------
T ss_pred ----------------------------------------------CCCceEEE--------------------------
Confidence 00001000
Q ss_pred CCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEe
Q 001287 467 SHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF 546 (1107)
Q Consensus 467 ~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fsp 546 (1107)
.+ ++..+++|+.||+|++||+.++.+. ..+.+|...|.++.+
T Consensus 286 -----------------------~~--~~~~l~~~~~d~~i~i~d~~~~~~~-----------~~~~~~~~~v~~~~~-- 327 (445)
T 2ovr_B 286 -----------------------QF--DGIHVVSGSLDTSIRVWDVETGNCI-----------HTLTGHQSLTSGMEL-- 327 (445)
T ss_dssp -----------------------EE--CSSEEEEEETTSCEEEEETTTCCEE-----------EEECCCCSCEEEEEE--
T ss_pred -----------------------EE--CCCEEEEEeCCCeEEEEECCCCCEE-----------EEEcCCcccEEEEEE--
Confidence 11 3448999999999999999988755 346788889988877
Q ss_pred CCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEee---cCcCEEEEEEcCCCCEEEEEeC
Q 001287 547 INSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSL---VNSPVRALQFTSSGAKLAVGFE 623 (1107)
Q Consensus 547 d~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---h~~~Vt~la~sp~~~~la~Gs~ 623 (1107)
++.+|++|+.||.|++|++... .++..+.. |...|++++|+ +++|++|+.
T Consensus 328 ~~~~l~~~~~dg~i~vwd~~~~-------------------------~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~ 380 (445)
T 2ovr_B 328 KDNILVSGNADSTVKIWDIKTG-------------------------QCLQTLQGPNKHQSAVTCLQFN--KNFVITSSD 380 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTTC-------------------------CEEEEECSTTSCSSCEEEEEEC--SSEEEEEET
T ss_pred eCCEEEEEeCCCeEEEEECCCC-------------------------cEEEEEccCCCCCCCEEEEEEC--CCEEEEEeC
Confidence 4679999999999999999764 24555555 88999999996 579999999
Q ss_pred CCeEEEEEcCCCeEEEEeecC--CCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCce----EEEE
Q 001287 624 CGRVAVLDMNLLSVLFFTDDI--SGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAK----ISIV 697 (1107)
Q Consensus 624 dg~V~iwd~~~~~~~~~~~~~--~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~----v~v~ 697 (1107)
||.|++||+.+++.+...... .+|..+|.+++|+ |++.+|++|+.||+ |.||
T Consensus 381 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s----------------------~~~~~la~~~~dg~~~~~l~v~ 438 (445)
T 2ovr_B 381 DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS----------------------NTKLVCAVGSRNGTEETKLLVL 438 (445)
T ss_dssp TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEEC----------------------SSEEEEEEECSSSSSCCEEEEE
T ss_pred CCeEEEEECCCCceeeeeeccccCCCCceEEEEEec----------------------CCEEEEEEcccCCCCccEEEEE
Confidence 999999999999887554322 3688999999999 56889999999998 9999
Q ss_pred eCC
Q 001287 698 GGS 700 (1107)
Q Consensus 698 d~~ 700 (1107)
|.+
T Consensus 439 df~ 441 (445)
T 2ovr_B 439 DFD 441 (445)
T ss_dssp ECC
T ss_pred ECC
Confidence 975
No 61
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=2.9e-29 Score=287.78 Aligned_cols=328 Identities=12% Similarity=0.157 Sum_probs=232.7
Q ss_pred eeCCCCCCEEEEEEEeC----CCEEEEEeCCCcEEEEEcCCCeeeeeec------cCCCeEEEEEecC----CCEEEEEc
Q 001287 71 LISPSQLPYKNLEFLQN----QGFLISITNDNEIQVWSLESRSLACCLK------WESNITAFSVISG----SHFMYIGD 136 (1107)
Q Consensus 71 ~~~~h~~~V~~l~fs~d----~~~L~S~s~d~~I~vWDl~s~~~~~~~~------~~~~Vt~l~~~~~----~~~l~~g~ 136 (1107)
+..+|..+|.+++|+|+ ...+++++.++.|++||+.+++.+..+. +...|++++|+++ +++|++|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 55689999999999984 5677777778899999999887655542 5578999999999 67999999
Q ss_pred CCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEe
Q 001287 137 ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG 216 (1107)
Q Consensus 137 ~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~ 216 (1107)
.||.|++|++.. ++... .+.+|. ..|.+++|+|. ++.+|++++.||.|++||+.+++.....
T Consensus 93 ~dg~i~v~d~~~--~~~~~---~~~~~~------------~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 154 (366)
T 3k26_A 93 SRGIIRIINPIT--MQCIK---HYVGHG------------NAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIF 154 (366)
T ss_dssp TTCEEEEECTTT--CCEEE---EEESCC------------SCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CCCEEEEEEchh--ceEee---eecCCC------------CcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEe
Confidence 999999999764 44442 355565 88999999885 5778999999999999999998876654
Q ss_pred ----CCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCC
Q 001287 217 ----GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGS 292 (1107)
Q Consensus 217 ----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~ 292 (1107)
+| ...|++++|. |++.+|++++.||.|++||+.+......
T Consensus 155 ~~~~~~------------------------------~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~----- 198 (366)
T 3k26_A 155 GGVEGH------------------------------RDEVLSADYD-LLGEKIMSCGMDHSLKLWRINSKRMMNA----- 198 (366)
T ss_dssp CSTTSC------------------------------SSCEEEEEEC-TTSSEEEEEETTSCEEEEESCSHHHHHH-----
T ss_pred cccccc------------------------------cCceeEEEEC-CCCCEEEEecCCCCEEEEECCCCccccc-----
Confidence 33 7789999986 9999999999999999999975421110
Q ss_pred CCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccc
Q 001287 293 RNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFA 372 (1107)
Q Consensus 293 ~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~ 372 (1107)
+.. . .....++..+...... ..
T Consensus 199 ------~~~---------------~---~~~~~~~~~~~~~~~~---------~~------------------------- 220 (366)
T 3k26_A 199 ------IKE---------------S---YDYNPNKTNRPFISQK---------IH------------------------- 220 (366)
T ss_dssp ------HHH---------------H---HTCCGGGCSSCCCCEE---------EC-------------------------
T ss_pred ------cce---------------e---EEecCCCCccccccee---------ec-------------------------
Confidence 000 0 0011000000000000 00
Q ss_pred eEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCc
Q 001287 373 DMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSS 452 (1107)
Q Consensus 373 d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~ 452 (1107)
...
T Consensus 221 ------------------------~~~----------------------------------------------------- 223 (366)
T 3k26_A 221 ------------------------FPD----------------------------------------------------- 223 (366)
T ss_dssp ------------------------CCS-----------------------------------------------------
T ss_pred ------------------------cCc-----------------------------------------------------
Confidence 000
Q ss_pred hhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeecc--c-eee
Q 001287 453 KGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDA--E-VQG 529 (1107)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~--~-~~~ 529 (1107)
+....++...+.+++++ ++++++|+.||.|++||+............. . ...
T Consensus 224 -----------------------~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 278 (366)
T 3k26_A 224 -----------------------FSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTIL 278 (366)
T ss_dssp -----------------------EEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEE
T ss_pred -----------------------cccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchhee
Confidence 00011122223333444 5699999999999999988765310000000 0 001
Q ss_pred eeecCCCCCeEEEEEEeC--CCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeec--CcC
Q 001287 530 IEVAGSRAPVSTLSFCFI--NSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLV--NSP 605 (1107)
Q Consensus 530 ~~l~~h~~~Vt~l~fspd--~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h--~~~ 605 (1107)
..+..|...|++++|+|+ +++|++|+.||.|++|++...... ......+..| ...
T Consensus 279 ~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~---------------------~~~~~~~~~~~~~~~ 337 (366)
T 3k26_A 279 GRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH---------------------KAKCTTLTHHKCGAA 337 (366)
T ss_dssp EEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG---------------------GCEEEEECCTTCCSC
T ss_pred ccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc---------------------cccceEEcccccCCc
Confidence 246688899999999999 999999999999999999875221 0133456677 799
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 001287 606 VRALQFTSSGAKLAVGFECGRVAVLDMN 633 (1107)
Q Consensus 606 Vt~la~sp~~~~la~Gs~dg~V~iwd~~ 633 (1107)
|++++|+|++++|++|+.||.|+|||+.
T Consensus 338 v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 338 IRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred eEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999999999999999999999985
No 62
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=8.3e-30 Score=301.20 Aligned_cols=205 Identities=16% Similarity=0.169 Sum_probs=164.6
Q ss_pred cCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCCCcc---eeeeCCCCCCEEEEEEEe-CCCEEEEEeCCCcEEEEEcC
Q 001287 32 YGIPATASILAFDH-IQRLLAIATLDGRIKVIGGDGIE---GLLISPSQLPYKNLEFLQ-NQGFLISITNDNEIQVWSLE 106 (1107)
Q Consensus 32 ~G~~~~i~~lafsp-~~~~LA~Gs~dg~I~iw~~~~~~---~~~~~~h~~~V~~l~fs~-d~~~L~S~s~d~~I~vWDl~ 106 (1107)
.+|...|+||+|+| ++.+||+|+.||.|+|||....+ .+...+|.++|++|+|+| ++.+|+|++.|++|++||++
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~ 195 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK 195 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc
Confidence 46788999999999 56799999999999999985443 234567999999999998 68899999999999999999
Q ss_pred CCeeeeeec---cCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEE
Q 001287 107 SRSLACCLK---WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVL 183 (1107)
Q Consensus 107 s~~~~~~~~---~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~ 183 (1107)
++....... +...+++++|++++++|++|+.||.|++|+++. +.. ..+.+|. ..|.+++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~---~~~---~~~~~h~------------~~v~~v~ 257 (435)
T 4e54_B 196 GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG---KEL---WNLRMHK------------KKVTHVA 257 (435)
T ss_dssp SCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS---CBC---CCSBCCS------------SCEEEEE
T ss_pred CCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc---cee---EEEeccc------------ceEEeee
Confidence 876554443 334688999999999999999999999999763 322 2355565 7899999
Q ss_pred cccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCC
Q 001287 184 PHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS 263 (1107)
Q Consensus 184 f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~ 263 (1107)
|+|. ...++++++.|+.|++||+.+.+....... ...+...|++++|. |+|.
T Consensus 258 ~~p~-~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~--------------------------~~~h~~~v~~~~~s-pdg~ 309 (435)
T 4e54_B 258 LNPC-CDWFLATASVDQTVKIWDLRQVRGKASFLY--------------------------SLPHRHPVNAACFS-PDGA 309 (435)
T ss_dssp ECTT-CSSEEEEEETTSBCCEEETTTCCSSSCCSB--------------------------CCBCSSCEEECCBC-TTSS
T ss_pred ecCC-CceEEEEecCcceeeEEecccccccceEEE--------------------------eeeccccccceeEC-CCCC
Confidence 9995 334688999999999999987543211100 00126789999985 9999
Q ss_pred EEEEEEcCCcEEEEeCCCC
Q 001287 264 ILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 264 ~l~sg~~dG~I~lWd~~~~ 282 (1107)
+|++|+.||.|++||+.++
T Consensus 310 ~l~s~~~D~~i~iwd~~~~ 328 (435)
T 4e54_B 310 RLLTTDQKSEIRVYSASQW 328 (435)
T ss_dssp EEEEEESSSCEEEEESSSS
T ss_pred eeEEEcCCCEEEEEECCCC
Confidence 9999999999999999765
No 63
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.8e-30 Score=307.87 Aligned_cols=192 Identities=9% Similarity=0.041 Sum_probs=138.3
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCCcce-----eeeCCCCCCEEEEEEEeC------CCEEEEEeCCCcEEEEEcCCCeee
Q 001287 43 FDHIQRLLAIATLDGRIKVIGGDGIEG-----LLISPSQLPYKNLEFLQN------QGFLISITNDNEIQVWSLESRSLA 111 (1107)
Q Consensus 43 fsp~~~~LA~Gs~dg~I~iw~~~~~~~-----~~~~~h~~~V~~l~fs~d------~~~L~S~s~d~~I~vWDl~s~~~~ 111 (1107)
.+|+++++|+|+.||.|+||+++..+. ..+..|.+.|..|+|+|+ +.+|++++.|++|+|||+.++...
T Consensus 169 ~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~ 248 (524)
T 2j04_B 169 LNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATD 248 (524)
T ss_dssp -------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSS
T ss_pred cchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccc
Confidence 478899999999999999999865443 234567889999999996 579999999999999999876421
Q ss_pred ------------eeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCe
Q 001287 112 ------------CCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1107)
Q Consensus 112 ------------~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1107)
....|...|++++|+++ ..|++|+.||+|++|++.... ... ..+.+|. ..|
T Consensus 249 ~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~-~~~---~~~~~H~------------~~V 311 (524)
T 2j04_B 249 VHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPE-VPS---FYDQVHD------------SYI 311 (524)
T ss_dssp SSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCS-SCS---EEEECSS------------SCE
T ss_pred cccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCC-Cce---EEeeccc------------ccE
Confidence 22257789999999986 489999999999999987421 111 2356666 889
Q ss_pred EEE--EcccCCCC-CEEEEEECCCeEEEEEccCCEEE-EEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEE
Q 001287 180 VGV--LPHPNSSG-NRVLIAYENALVILWDVSEAQII-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 255 (1107)
Q Consensus 180 ~~v--~f~P~~~~-~~ll~~~~dg~V~vwdl~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl 255 (1107)
.+| .|+| ++ .+|++++.|++|+|||+++++.. ...+|. ....|.++
T Consensus 312 ~sv~~~~s~--~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~----------------------------~~~~v~~v 361 (524)
T 2j04_B 312 LSVSTAYSD--FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF----------------------------RGSNLVPV 361 (524)
T ss_dssp EEEEEECCT--TSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC----------------------------SCCSCCCE
T ss_pred EEEEEEcCC--CCCeEEEEeccCCeEEEEECCCCCccccccccc----------------------------ccCcccce
Confidence 999 5655 55 77999999999999999886542 222330 02347889
Q ss_pred EeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 256 CWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 256 ~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
+|. |++..+++++.|++|++||+.++
T Consensus 362 ~fs-p~~~~l~s~~~d~tv~lwd~~~~ 387 (524)
T 2j04_B 362 VYC-PQIYSYIYSDGASSLRAVPSRAA 387 (524)
T ss_dssp EEE-TTTTEEEEECSSSEEEEEETTCT
T ss_pred EeC-CCcCeEEEeCCCCcEEEEECccc
Confidence 986 99999999999999999998643
No 64
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=8.8e-28 Score=286.15 Aligned_cols=219 Identities=16% Similarity=0.240 Sum_probs=166.6
Q ss_pred ceeeeecCCCCCe-EEEEEcCCCCEEEEEECCCcEEEEeCCCccee-eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEE
Q 001287 26 LRIAVHYGIPATA-SILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVW 103 (1107)
Q Consensus 26 ~~~~~~~G~~~~i-~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vW 103 (1107)
+......||...+ +|++|+ +.+||+|+.||.|++|+....+.+ ...+|.++|.+++|++++ +|++++.|++|++|
T Consensus 112 ~~~~~l~~h~~~v~~~~~~~--~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp CEEEEEECCSSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred cceEEEcCCCCCcEEEEEEC--CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 3444556888774 677775 679999999999999998665544 567899999999999986 99999999999999
Q ss_pred EcCCCeeeeee-ccCCCeEEEEEe--cCCCEEEEEcCCCcEEEEEeecCCCceeec-----ceeecccccc-cccCCCCC
Q 001287 104 SLESRSLACCL-KWESNITAFSVI--SGSHFMYIGDENGLMSVIKYDADEGKLFQL-----PYNISADALS-EKAGFPLL 174 (1107)
Q Consensus 104 Dl~s~~~~~~~-~~~~~Vt~l~~~--~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~-----~~~i~~~~~~-~~~~~~~~ 174 (1107)
|+.+++.+..+ .|.+.|++++++ ++++++++|+.||.|++|++.......... +..+...... ........
T Consensus 189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T 3v7d_B 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence 99999888777 488999999999 467899999999999999987532111000 0000000000 00001122
Q ss_pred CCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEE-eCCccccccccccCCCCCCCCccccCCCCCCCCCCcee
Q 001287 175 SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV-GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEIS 253 (1107)
Q Consensus 175 ~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt 253 (1107)
+...|.++.+ ++.++++++.||.|++||+.+++.+.. .+| ...|+
T Consensus 269 ~~~~v~~~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~------------------------------~~~v~ 314 (464)
T 3v7d_B 269 HMASVRTVSG----HGNIVVSGSYDNTLIVWDVAQMKCLYILSGH------------------------------TDRIY 314 (464)
T ss_dssp CSSCEEEEEE----ETTEEEEEETTSCEEEEETTTTEEEEEECCC------------------------------SSCEE
T ss_pred ccceEEEEcC----CCCEEEEEeCCCeEEEEECCCCcEEEEecCC------------------------------CCCEE
Confidence 3477888855 567899999999999999999887654 344 77899
Q ss_pred EEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 254 ALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 254 sl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
+++|. |++.+|++|+.||.|++||+.++
T Consensus 315 ~~~~~-~~~~~l~sg~~dg~i~vwd~~~~ 342 (464)
T 3v7d_B 315 STIYD-HERKRCISASMDTTIRIWDLENG 342 (464)
T ss_dssp EEEEE-TTTTEEEEEETTSCEEEEETTTT
T ss_pred EEEEc-CCCCEEEEEeCCCcEEEEECCCC
Confidence 99986 99999999999999999999754
No 65
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=7.9e-29 Score=285.36 Aligned_cols=309 Identities=13% Similarity=0.099 Sum_probs=217.1
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCC-------cEEEEeCCCcc-----------eeeeCCCCCCEEEEEEEeCCCEEEE
Q 001287 32 YGIPATASILAFDHIQRLLAIATLDG-------RIKVIGGDGIE-----------GLLISPSQLPYKNLEFLQNQGFLIS 93 (1107)
Q Consensus 32 ~G~~~~i~~lafsp~~~~LA~Gs~dg-------~I~iw~~~~~~-----------~~~~~~h~~~V~~l~fs~d~~~L~S 93 (1107)
|-+..+|.|++|+|++++||+|+.|. .|+||+.+... ...+..|+..|.+++|. +..+++
T Consensus 11 ~~~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~ 88 (365)
T 4h5i_A 11 YNVGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILV 88 (365)
T ss_dssp EECSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEE
T ss_pred cCCCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEE
Confidence 33455699999999999999998643 59999985432 12456788888887665 456777
Q ss_pred EeCCCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCC
Q 001287 94 ITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPL 173 (1107)
Q Consensus 94 ~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~ 173 (1107)
++.++..++| .|+.|+.+++|+++...+.+... ..... ....
T Consensus 89 g~~~~~~~l~------------------------------s~~~d~~~r~~~~~~~~~~~~~~-~~~~~-------~~~~ 130 (365)
T 4h5i_A 89 GCNENSTKIT------------------------------QGKGNKHLRKFKYDKVNDQLEFL-TSVDF-------DAST 130 (365)
T ss_dssp ECCCCHHHHH------------------------------HTSCCCCEEEEEEETTTTEEEEE-EEECS-------SCCC
T ss_pred EECCCccEEE------------------------------EecCCCcEEEEEecCCCceEEEe-eeece-------eecC
Confidence 7655544333 34456777888877654433311 00110 0111
Q ss_pred CCCCCeEEEEcccCCCCCEEEEEE--CCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCc
Q 001287 174 LSHQPVVGVLPHPNSSGNRVLIAY--ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 251 (1107)
Q Consensus 174 ~~~~~V~~v~f~P~~~~~~ll~~~--~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1107)
.....+.+++|+| +|+++++++ .|++|+|||+.+++.+....| ...
T Consensus 131 ~~~~~~~~v~fSp--Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~~------------------------------~~~ 178 (365)
T 4h5i_A 131 NADDYTKLVYISR--EGTVAAIASSKVPAIMRIIDPSDLTEKFEIET------------------------------RGE 178 (365)
T ss_dssp CTTCCEEEEEECT--TSSCEEEEESCSSCEEEEEETTTTEEEEEEEC------------------------------SSC
T ss_pred CcccCEEEEEEcC--CCCEEEEEECCCCCEEEEeECCCCcEEEEeCC------------------------------CCc
Confidence 1235689999998 788777665 689999999999988776666 667
Q ss_pred eeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEE
Q 001287 252 ISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFV 331 (1107)
Q Consensus 252 Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv 331 (1107)
|.+++|. |||++|++++.++ +.+|+..++.. +.....
T Consensus 179 V~~v~fs-pdg~~l~s~s~~~-~~~~~~~~~~~-----------~~~~~~------------------------------ 215 (365)
T 4h5i_A 179 VKDLHFS-TDGKVVAYITGSS-LEVISTVTGSC-----------IARKTD------------------------------ 215 (365)
T ss_dssp CCEEEEC-TTSSEEEEECSSC-EEEEETTTCCE-----------EEEECC------------------------------
T ss_pred eEEEEEc-cCCceEEecccee-EEEEEeccCcc-----------eeeeec------------------------------
Confidence 9999985 9999999998655 55665543210 000000
Q ss_pred EeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeee
Q 001287 332 YGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTL 411 (1107)
Q Consensus 332 ~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~ 411 (1107)
T Consensus 216 -------------------------------------------------------------------------------- 215 (365)
T 4h5i_A 216 -------------------------------------------------------------------------------- 215 (365)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCcccc
Q 001287 412 LSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKC 491 (1107)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~ 491 (1107)
.++...+..+++
T Consensus 216 --------------------------------------------------------------------~~~~~~v~~v~f 227 (365)
T 4h5i_A 216 --------------------------------------------------------------------FDKNWSLSKINF 227 (365)
T ss_dssp --------------------------------------------------------------------CCTTEEEEEEEE
T ss_pred --------------------------------------------------------------------CCCCCCEEEEEE
Confidence 000000112256
Q ss_pred CCCCcEEEEEecCC----cEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecC
Q 001287 492 HSVDRVYLAGYHDG----SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNG 567 (1107)
Q Consensus 492 s~~~~~laTgs~Dg----tIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~ 567 (1107)
+|+++++++++.|+ .+++||+......... ...+.+|..+|++|+|+|||++||+|+.||.|+||++.+
T Consensus 228 spdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~-------~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~ 300 (365)
T 4h5i_A 228 IADDTVLIAASLKKGKGIVLTKISIKSGNTSVLR-------SKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD 300 (365)
T ss_dssp EETTEEEEEEEESSSCCEEEEEEEEETTEEEEEE-------EEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT
T ss_pred cCCCCEEEEEecCCcceeEEeecccccceeccee-------eeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC
Confidence 67788999998887 5888998766543211 124678999999999999999999999999999999877
Q ss_pred CCCCccceeeccCcCcceecccCCcceeEEEE-eecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 001287 568 SLDAKNFLFVLETKSEVHALPEGKISLCRAVF-SLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLL 635 (1107)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~ 635 (1107)
. +++..+ .+|..+|++|+|||||++||+|+.|++|+|||+...
T Consensus 301 ~-------------------------~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 301 L-------------------------SMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp T-------------------------EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred C-------------------------cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 5 345554 689999999999999999999999999999999643
No 66
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.8e-28 Score=270.58 Aligned_cols=288 Identities=12% Similarity=0.159 Sum_probs=227.8
Q ss_pred eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEee
Q 001287 69 GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1107)
Q Consensus 69 ~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d 147 (1107)
...+.+|.++|++++| +++.+|++++.|+.|++||+.+++....+ .+...|++++|+|+++++++|+.||.|++|++.
T Consensus 11 ~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 89 (313)
T 3odt_A 11 SATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLF 89 (313)
T ss_dssp EEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred HHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEee
Confidence 3467789999999999 88899999999999999999999877666 678999999999999999999999999999976
Q ss_pred cCC-CceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCcccccccc
Q 001287 148 ADE-GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDG 226 (1107)
Q Consensus 148 ~~~-~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~ 226 (1107)
... .... ..+..|. ..|.++.| ++.++++++.||.|++|| ..........|
T Consensus 90 ~~~~~~~~---~~~~~~~------------~~i~~~~~----~~~~l~~~~~d~~i~~~d-~~~~~~~~~~~-------- 141 (313)
T 3odt_A 90 ATSGEDPL---YTLIGHQ------------GNVCSLSF----QDGVVISGSWDKTAKVWK-EGSLVYNLQAH-------- 141 (313)
T ss_dssp CCTTSCC----CEECCCS------------SCEEEEEE----ETTEEEEEETTSEEEEEE-TTEEEEEEECC--------
T ss_pred ecCCCCcc---cchhhcc------------cCEEEEEe----cCCEEEEEeCCCCEEEEc-CCcEEEecccC--------
Confidence 532 2222 2355555 78999999 355799999999999999 33333344445
Q ss_pred ccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccC
Q 001287 227 VVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAER 306 (1107)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 306 (1107)
...|.+++|..+++..+++++.||.|++||.... ..
T Consensus 142 ----------------------~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-------------~~--------- 177 (313)
T 3odt_A 142 ----------------------NASVWDAKVVSFSENKFLTASADKTIKLWQNDKV-------------IK--------- 177 (313)
T ss_dssp ----------------------SSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE-------------EE---------
T ss_pred ----------------------CCceeEEEEccCCCCEEEEEECCCCEEEEecCce-------------EE---------
Confidence 7789999998559999999999999999993210 00
Q ss_pred ccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCC
Q 001287 307 RLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGN 386 (1107)
Q Consensus 307 ~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~ 386 (1107)
.+ . ..
T Consensus 178 -----~~--~------~~-------------------------------------------------------------- 182 (313)
T 3odt_A 178 -----TF--S------GI-------------------------------------------------------------- 182 (313)
T ss_dssp -----EE--C------SS--------------------------------------------------------------
T ss_pred -----EE--e------cc--------------------------------------------------------------
Confidence 00 0 00
Q ss_pred CcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccC
Q 001287 387 HKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHS 466 (1107)
Q Consensus 387 ~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1107)
+...+
T Consensus 183 ----------------------------------------------~~~~i----------------------------- 187 (313)
T 3odt_A 183 ----------------------------------------------HNDVV----------------------------- 187 (313)
T ss_dssp ----------------------------------------------CSSCE-----------------------------
T ss_pred ----------------------------------------------CcccE-----------------------------
Confidence 00001
Q ss_pred CCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEe
Q 001287 467 SHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF 546 (1107)
Q Consensus 467 ~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fsp 546 (1107)
..+++++++. +++|+.||.|++||+..+.+. ..+.+|...|++++|+|
T Consensus 188 --------------------~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~-----------~~~~~~~~~i~~~~~~~ 235 (313)
T 3odt_A 188 --------------------RHLAVVDDGH-FISCSNDGLIKLVDMHTGDVL-----------RTYEGHESFVYCIKLLP 235 (313)
T ss_dssp --------------------EEEEEEETTE-EEEEETTSEEEEEETTTCCEE-----------EEEECCSSCEEEEEECT
T ss_pred --------------------EEEEEcCCCe-EEEccCCCeEEEEECCchhhh-----------hhhhcCCceEEEEEEec
Confidence 1113445555 889999999999999987755 34668999999999999
Q ss_pred CCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCe
Q 001287 547 INSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGR 626 (1107)
Q Consensus 547 d~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~ 626 (1107)
++ .|++++.||.|++|++... .++..+..|...|++++|+|+++ +++|+.||.
T Consensus 236 ~~-~l~~~~~dg~v~iwd~~~~-------------------------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~ 288 (313)
T 3odt_A 236 NG-DIVSCGEDRTVRIWSKENG-------------------------SLKQVITLPAISIWSVDCMSNGD-IIVGSSDNL 288 (313)
T ss_dssp TS-CEEEEETTSEEEEECTTTC-------------------------CEEEEEECSSSCEEEEEECTTSC-EEEEETTSC
T ss_pred CC-CEEEEecCCEEEEEECCCC-------------------------ceeEEEeccCceEEEEEEccCCC-EEEEeCCCc
Confidence 99 6889999999999998775 25677788999999999999998 567999999
Q ss_pred EEEEEcCCCeEE
Q 001287 627 VAVLDMNLLSVL 638 (1107)
Q Consensus 627 V~iwd~~~~~~~ 638 (1107)
|++||+..+..+
T Consensus 289 i~iw~~~~~~~~ 300 (313)
T 3odt_A 289 VRIFSQEKSRWA 300 (313)
T ss_dssp EEEEESCGGGCC
T ss_pred EEEEeCCCCcee
Confidence 999999987765
No 67
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.7e-28 Score=276.04 Aligned_cols=303 Identities=11% Similarity=0.116 Sum_probs=238.1
Q ss_pred eeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCE
Q 001287 113 CLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1107)
Q Consensus 113 ~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ 192 (1107)
...|.+.|++++|+|++++|++|+.||.|++|++.. ++... .+..|. ..|.+++|+| ++++
T Consensus 28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~--~~~~~---~~~~h~------------~~v~~~~~~~--~~~~ 88 (369)
T 3zwl_B 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN--GERLG---TLDGHT------------GTIWSIDVDC--FTKY 88 (369)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTT--CCEEE---EECCCS------------SCEEEEEECT--TSSE
T ss_pred EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCC--chhhh---hhhhcC------------CcEEEEEEcC--CCCE
Confidence 347889999999999999999999999999999764 44442 366665 7899999988 6888
Q ss_pred EEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcC-
Q 001287 193 VLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID- 271 (1107)
Q Consensus 193 ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~d- 271 (1107)
|++++.||.|++||+.+++.+....+ ...|.+++|. |++.+|++++.+
T Consensus 89 l~s~~~dg~i~iwd~~~~~~~~~~~~------------------------------~~~v~~~~~~-~~~~~l~~~~~~~ 137 (369)
T 3zwl_B 89 CVTGSADYSIKLWDVSNGQCVATWKS------------------------------PVPVKRVEFS-PCGNYFLAILDNV 137 (369)
T ss_dssp EEEEETTTEEEEEETTTCCEEEEEEC------------------------------SSCEEEEEEC-TTSSEEEEEECCB
T ss_pred EEEEeCCCeEEEEECCCCcEEEEeec------------------------------CCCeEEEEEc-cCCCEEEEecCCc
Confidence 99999999999999999887766545 6789999986 999999999999
Q ss_pred ----CcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEE
Q 001287 272 ----GDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLS 347 (1107)
Q Consensus 272 ----G~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~ 347 (1107)
|.|.+||+........ +. .. ....
T Consensus 138 ~~~~g~i~~~d~~~~~~~~~-----------~~-----------~~-------------------~~~~----------- 165 (369)
T 3zwl_B 138 MKNPGSINIYEIERDSATHE-----------LT-----------KV-------------------SEEP----------- 165 (369)
T ss_dssp TTBCCEEEEEEEEECTTTCC-----------EE-----------EE-------------------CSSC-----------
T ss_pred cCCCCEEEEEEecCCcccee-----------ec-----------cc-------------------ccce-----------
Confidence 9999999865421110 00 00 0000
Q ss_pred cCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCC
Q 001287 348 LEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFP 427 (1107)
Q Consensus 348 l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 427 (1107)
+..+. .
T Consensus 166 ----------------------------------------------------~~~~~---------~------------- 171 (369)
T 3zwl_B 166 ----------------------------------------------------IHKII---------T------------- 171 (369)
T ss_dssp ----------------------------------------------------SEEEE---------C-------------
T ss_pred ----------------------------------------------------eeecc---------C-------------
Confidence 00000 0
Q ss_pred cccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcE
Q 001287 428 GVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSV 507 (1107)
Q Consensus 428 ~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtI 507 (1107)
+.. ...+..+++++++++|++|+.||.|
T Consensus 172 -----~~~-----------------------------------------------~~~~~~~~~~~~~~~l~~~~~dg~i 199 (369)
T 3zwl_B 172 -----HEG-----------------------------------------------LDAATVAGWSTKGKYIIAGHKDGKI 199 (369)
T ss_dssp -----CTT-----------------------------------------------CCCEEEEEECGGGCEEEEEETTSEE
T ss_pred -----CcC-----------------------------------------------ccceeEEEEcCCCCEEEEEcCCCEE
Confidence 000 0011223567788899999999999
Q ss_pred EEEeCCC-CceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCccee
Q 001287 508 RIWDATY-PVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHA 586 (1107)
Q Consensus 508 riWd~~~-~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~ 586 (1107)
++||+.. .... ..+..|...|++++|+|++++|++++.||.|++|++....
T Consensus 200 ~i~d~~~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~----------------- 251 (369)
T 3zwl_B 200 SKYDVSNNYEYV-----------DSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ----------------- 251 (369)
T ss_dssp EEEETTTTTEEE-----------EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----------------
T ss_pred EEEECCCCcEeE-----------EEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCc-----------------
Confidence 9999987 3433 3466788999999999999999999999999999997751
Q ss_pred cccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCC--------------eEEEEEcCCCeEEEEeecCCCCCCceE
Q 001287 587 LPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECG--------------RVAVLDMNLLSVLFFTDDISGSSSPII 652 (1107)
Q Consensus 587 ~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg--------------~V~iwd~~~~~~~~~~~~~~~h~~~V~ 652 (1107)
++..+. +...+++++|+|+++++++|+.++ .|++||+..+..+. .+.+|...|.
T Consensus 252 --------~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~---~~~~~~~~v~ 319 (369)
T 3zwl_B 252 --------VLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIG---RVQGHFGPLN 319 (369)
T ss_dssp --------EEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEE---EEECCSSCEE
T ss_pred --------eeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchh---heecccCcEE
Confidence 334443 888999999999999999999998 89999999998874 4467999999
Q ss_pred EEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCccee
Q 001287 653 SMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMI 705 (1107)
Q Consensus 653 ~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~i 705 (1107)
+++|+ |++.+|++++.||.|++||.+++...
T Consensus 320 ~~~~s----------------------~~~~~l~s~~~dg~v~iw~~~~~~~~ 350 (369)
T 3zwl_B 320 TVAIS----------------------PQGTSYASGGEDGFIRLHHFEKSYFD 350 (369)
T ss_dssp EEEEC----------------------TTSSEEEEEETTSEEEEEEECHHHHT
T ss_pred EEEEC----------------------CCCCEEEEEcCCCeEEEEECccccch
Confidence 99999 56889999999999999999876654
No 68
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=3.5e-28 Score=279.85 Aligned_cols=308 Identities=15% Similarity=0.069 Sum_probs=230.0
Q ss_pred cCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEE
Q 001287 116 WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLI 195 (1107)
Q Consensus 116 ~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~ 195 (1107)
|...|++++|+|++++|++|+.+|.|++|+++....... ..+.+|. ..|.+++|+| ++.+|++
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~---~~~~~h~------------~~v~~~~~~~--~~~~l~~ 69 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQV---HELKEHN------------GQVTGVDWAP--DSNRIVT 69 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEE---EEEECCS------------SCEEEEEEET--TTTEEEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEee---eeecCCC------------CcccEEEEeC--CCCEEEE
Confidence 678899999999999999999999999999885321133 3355665 7899999998 6888999
Q ss_pred EECCCeEEEEEccCCEEEEE---eCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCC
Q 001287 196 AYENALVILWDVSEAQIIFV---GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 272 (1107)
Q Consensus 196 ~~~dg~V~vwdl~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG 272 (1107)
++.||.|++||+.+++.... .+| ...|++++|. |++++|++++.||
T Consensus 70 ~~~dg~i~vwd~~~~~~~~~~~~~~~------------------------------~~~v~~~~~~-~~~~~l~~~~~d~ 118 (372)
T 1k8k_C 70 CGTDRNAYVWTLKGRTWKPTLVILRI------------------------------NRAARCVRWA-PNEKKFAVGSGSR 118 (372)
T ss_dssp EETTSCEEEEEEETTEEEEEEECCCC------------------------------SSCEEEEEEC-TTSSEEEEEETTS
T ss_pred EcCCCeEEEEECCCCeeeeeEEeecC------------------------------CCceeEEEEC-CCCCEEEEEeCCC
Confidence 99999999999999875433 333 6789999986 9999999999999
Q ss_pred cEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccc
Q 001287 273 DILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSS 352 (1107)
Q Consensus 273 ~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~ 352 (1107)
.|++||+...... . .. ..+
T Consensus 119 ~v~i~d~~~~~~~-----------~--------------~~------------------------------~~~------ 137 (372)
T 1k8k_C 119 VISICYFEQENDW-----------W--------------VC------------------------------KHI------ 137 (372)
T ss_dssp SEEEEEEETTTTE-----------E--------------EE------------------------------EEE------
T ss_pred EEEEEEecCCCcc-----------e--------------ee------------------------------eee------
Confidence 9999998643100 0 00 000
Q ss_pred cccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCccccc
Q 001287 353 GMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPI 432 (1107)
Q Consensus 353 ~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (1107)
T Consensus 138 -------------------------------------------------------------------------------- 137 (372)
T 1k8k_C 138 -------------------------------------------------------------------------------- 137 (372)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeC
Q 001287 433 SDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDA 512 (1107)
Q Consensus 433 ~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~ 512 (1107)
..++...+..+++++++++|++|+.||.|++||+
T Consensus 138 ----------------------------------------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~ 171 (372)
T 1k8k_C 138 ----------------------------------------------KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA 171 (372)
T ss_dssp ----------------------------------------------CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred ----------------------------------------------ecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEc
Confidence 0000001112256677779999999999999996
Q ss_pred CCCceeEEEe-------eccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcce
Q 001287 513 TYPVFKLICA-------LDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVH 585 (1107)
Q Consensus 513 ~~~~l~~~~~-------l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~ 585 (1107)
.......... .........+.+|...|++++|+|++.+|++++.||.|++|++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----------------- 234 (372)
T 1k8k_C 172 YIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK----------------- 234 (372)
T ss_dssp CCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT-----------------
T ss_pred ccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC-----------------
Confidence 5221100000 0000000346688999999999999999999999999999999765
Q ss_pred ecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC--CeEEEE-----------------------
Q 001287 586 ALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNL--LSVLFF----------------------- 640 (1107)
Q Consensus 586 ~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~--~~~~~~----------------------- 640 (1107)
.++..+..|..+|++++|+|++++|++| .||.|++||+.. +...+.
T Consensus 235 --------~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (372)
T 1k8k_C 235 --------MAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNL 305 (372)
T ss_dssp --------TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHC
T ss_pred --------ceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhc
Confidence 2567778899999999999999999988 899999999988 532110
Q ss_pred -------------eecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCc---cEEEEEcCCceEEEEeCCCcce
Q 001287 641 -------------TDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAE---EVIIVLFKDAKISIVGGSSENM 704 (1107)
Q Consensus 641 -------------~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~---~~L~s~s~Dg~v~v~d~~~g~~ 704 (1107)
.....+|..+|.+++|.+ +++ .+|++++.||.|++||..+++.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---------------------~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 306 DKKASSEGSAAAGAGLDSLHKNSVSQISVLS---------------------GGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp CCCC---------CCCSSSSSSCEEEEEEEE---------------------STTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred ccccccccCccccccccccccCCcceeEEec---------------------CCCcceeeEEEecCCCceEEEEecChhH
Confidence 112248999999999773 234 7899999999999999987664
Q ss_pred e
Q 001287 705 I 705 (1107)
Q Consensus 705 i 705 (1107)
+
T Consensus 365 ~ 365 (372)
T 1k8k_C 365 A 365 (372)
T ss_dssp H
T ss_pred h
Confidence 4
No 69
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=3.1e-28 Score=283.24 Aligned_cols=308 Identities=9% Similarity=0.088 Sum_probs=225.5
Q ss_pred eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCe------ee-eeeccCCCeEEEEEecC----C---CEEEEEc
Q 001287 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS------LA-CCLKWESNITAFSVISG----S---HFMYIGD 136 (1107)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~------~~-~~~~~~~~Vt~l~~~~~----~---~~l~~g~ 136 (1107)
.+.+|.++|.+|+|+| .+|++++.|+.|++||+.+++ .+ ....|...|++++|+++ + ++|++|+
T Consensus 11 ~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~ 88 (397)
T 1sq9_A 11 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 88 (397)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred hhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEc
Confidence 5568999999999998 799999999999999999987 34 44478899999999999 9 9999999
Q ss_pred CCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcc----cCCCCCE-EEEEECCCeEEEEEccC--
Q 001287 137 ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH----PNSSGNR-VLIAYENALVILWDVSE-- 209 (1107)
Q Consensus 137 ~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~----P~~~~~~-ll~~~~dg~V~vwdl~~-- 209 (1107)
.||.|++|+++............+..|... .....|.+++|+ | ++.+ |++++.||.|++||+.+
T Consensus 89 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~ 159 (397)
T 1sq9_A 89 FSGDLLFYRITREDETKKVIFEKLDLLDSD-------MKKHSFWALKWGASNDR--LLSHRLVATDVKGTTYIWKFHPFA 159 (397)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEECCSCTT-------GGGSCEEEEEEECCC------CEEEEEEETTSCEEEEEEESSS
T ss_pred CCCCEEEEEccCCcccccccceeecccccc-------cCCCcEEEEEEeeccCC--CCceEEEEEeCCCcEEEEeCCccc
Confidence 999999999986432110001224433100 001779999999 6 6888 99999999999999987
Q ss_pred ----CEEE------EEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeC
Q 001287 210 ----AQII------FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 279 (1107)
Q Consensus 210 ----~~~~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~ 279 (1107)
++.+ .+.+. ......+...|++++|. |++ .|++++.||.|++||+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~i~~~~~~-~~~-~l~~~~~dg~i~i~d~ 214 (397)
T 1sq9_A 160 DESNSLTLNWSPTLELQGT-----------------------VESPMTPSQFATSVDIS-ERG-LIATGFNNGTVQISEL 214 (397)
T ss_dssp SHHHHTTTCCCCEEEEEEE-----------------------ECCSSSSCCCCCEEEEC-TTS-EEEEECTTSEEEEEET
T ss_pred cccccceeeccCcceeeee-----------------------eccccCCCCCceEEEEC-CCc-eEEEEeCCCcEEEEEC
Confidence 4322 11110 00001126789999986 999 9999999999999999
Q ss_pred CCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccce
Q 001287 280 STTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRC 359 (1107)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~ 359 (1107)
.+.. .+ ..+ .. .
T Consensus 215 ~~~~-----------~~--------------~~~---------------------------------~~--~-------- 226 (397)
T 1sq9_A 215 STLR-----------PL--------------YNF---------------------------------ES--Q-------- 226 (397)
T ss_dssp TTTE-----------EE--------------EEE---------------------------------EC--C--------
T ss_pred CCCc-----------ee--------------EEE---------------------------------ec--c--------
Confidence 6431 00 000 00 0
Q ss_pred eeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeE
Q 001287 360 VSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTV 439 (1107)
Q Consensus 360 ~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~ 439 (1107)
. + |.
T Consensus 227 ------------------~-------------------~----------------------------------h~----- 230 (397)
T 1sq9_A 227 ------------------H-------------------S----------------------------------MI----- 230 (397)
T ss_dssp ------------------C-------------------------------------------------------------
T ss_pred ------------------c-------------------c----------------------------------cc-----
Confidence 0 0 00
Q ss_pred EEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecC---CcEEEEeCCCCc
Q 001287 440 AEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHD---GSVRIWDATYPV 516 (1107)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~D---gtIriWd~~~~~ 516 (1107)
. ....+..+++++++++|++|+.| |.|++||+..+.
T Consensus 231 --------------------------------------~---~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~ 269 (397)
T 1sq9_A 231 --------------------------------------N---NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE 269 (397)
T ss_dssp --------------------------------------C---CCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred --------------------------------------c---cCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc
Confidence 0 00001122566777899999999 999999998877
Q ss_pred eeEEEeeccceeeeeecC-------------CCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCc
Q 001287 517 FKLICALDAEVQGIEVAG-------------SRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSE 583 (1107)
Q Consensus 517 l~~~~~l~~~~~~~~l~~-------------h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~ 583 (1107)
+. ..+.+ |...|++++|+|++++|++++.||.|+||++...
T Consensus 270 ~~-----------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--------------- 323 (397)
T 1sq9_A 270 RI-----------GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK--------------- 323 (397)
T ss_dssp EE-----------EEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---------------
T ss_pred cc-----------ceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC---------------
Confidence 54 22334 8889999999999999999999999999999775
Q ss_pred ceecccCCcceeEEEEe------ec---------------CcCEEEEEEcCCC----------CEEEEEeCCCeEEEEEc
Q 001287 584 VHALPEGKISLCRAVFS------LV---------------NSPVRALQFTSSG----------AKLAVGFECGRVAVLDM 632 (1107)
Q Consensus 584 ~~~~~~~~g~~~~~~~~------~h---------------~~~Vt~la~sp~~----------~~la~Gs~dg~V~iwd~ 632 (1107)
.++..+. .| ...|++++|+|++ ++|++|+.||.|+|||+
T Consensus 324 ----------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 324 ----------ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 393 (397)
T ss_dssp ----------EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred ----------ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence 2445555 55 9999999999998 79999999999999999
Q ss_pred CCC
Q 001287 633 NLL 635 (1107)
Q Consensus 633 ~~~ 635 (1107)
.++
T Consensus 394 ~~g 396 (397)
T 1sq9_A 394 AGG 396 (397)
T ss_dssp EC-
T ss_pred CCC
Confidence 875
No 70
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=2.6e-28 Score=306.29 Aligned_cols=207 Identities=15% Similarity=0.162 Sum_probs=173.3
Q ss_pred ecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCc------ceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEE
Q 001287 31 HYGIPATASILAFDHIQ-RLLAIATLDGRIKVIGGDGI------EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVW 103 (1107)
Q Consensus 31 ~~G~~~~i~~lafsp~~-~~LA~Gs~dg~I~iw~~~~~------~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vW 103 (1107)
..||...|++++|+|++ .+||+|+.||.|+||++... ....+.+|...|.+++|+|++.+|++++.|++|+||
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vw 457 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 45999999999999875 79999999999999998542 233567899999999999999999999999999999
Q ss_pred EcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEE
Q 001287 104 SLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1107)
Q Consensus 104 Dl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v 182 (1107)
|+.++..+..+ .|...|++++|+|++++|++|+.|++|++|+... .... .+... ...+...|.++
T Consensus 458 d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~--~~~~----~~~~~--------~~~h~~~v~~~ 523 (694)
T 3dm0_A 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG--ECKY----TISEG--------GEGHRDWVSCV 523 (694)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS--CEEE----EECSS--------TTSCSSCEEEE
T ss_pred ECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCC--Ccce----eeccC--------CCCCCCcEEEE
Confidence 99999887766 7889999999999999999999999999998642 1111 12110 11233789999
Q ss_pred EcccCCCCCEEEEEECCCeEEEEEccCCEEEE-EeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCC
Q 001287 183 LPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS 261 (1107)
Q Consensus 183 ~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spd 261 (1107)
+|+|......+++++.|+.|++||+.+.+... +.+| ...|++++|. |+
T Consensus 524 ~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h------------------------------~~~v~~v~~s-pd 572 (694)
T 3dm0_A 524 RFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGH------------------------------TGYVSTVAVS-PD 572 (694)
T ss_dssp EECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCC------------------------------SSCEEEEEEC-TT
T ss_pred EEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCC------------------------------CCCEEEEEEe-CC
Confidence 99996545679999999999999999887654 4455 7789999985 99
Q ss_pred CCEEEEEEcCCcEEEEeCCCC
Q 001287 262 GSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 262 g~~l~sg~~dG~I~lWd~~~~ 282 (1107)
|++|++|+.||.|++||+.++
T Consensus 573 g~~l~sg~~Dg~i~iwd~~~~ 593 (694)
T 3dm0_A 573 GSLCASGGKDGVVLLWDLAEG 593 (694)
T ss_dssp SSEEEEEETTSBCEEEETTTT
T ss_pred CCEEEEEeCCCeEEEEECCCC
Confidence 999999999999999999654
No 71
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.2e-29 Score=293.64 Aligned_cols=202 Identities=12% Similarity=0.111 Sum_probs=164.4
Q ss_pred cCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCCC---c---ceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEE
Q 001287 32 YGIPATASILAFDH-IQRLLAIATLDGRIKVIGGDG---I---EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWS 104 (1107)
Q Consensus 32 ~G~~~~i~~lafsp-~~~~LA~Gs~dg~I~iw~~~~---~---~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWD 104 (1107)
.||.+.|++++|+| ++++||+|+.||.|+||+... . .......|..+|.+++|+|++.+|++++.|+.|++||
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd 139 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLK 139 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence 68899999999999 999999999999999999854 2 2233446999999999999999999999999999999
Q ss_pred cC---CCeeeee--------ec-----cCCCeEEEE--EecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecc--cc
Q 001287 105 LE---SRSLACC--------LK-----WESNITAFS--VISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISA--DA 164 (1107)
Q Consensus 105 l~---s~~~~~~--------~~-----~~~~Vt~l~--~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~--~~ 164 (1107)
+. +++.... +. +...++++. ++++++++++|+.||.|++|++.. ++... .+.. |.
T Consensus 140 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~---~~~~~~h~ 214 (437)
T 3gre_A 140 VNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT--LERLQ---IIENSPRH 214 (437)
T ss_dssp EEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT--CCEEE---EEECCGGG
T ss_pred eccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--CeeeE---EEccCCCC
Confidence 95 4433322 21 456677777 557899999999999999999864 34442 2444 44
Q ss_pred cccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEe--CCccccccccccCCCCCCCCccccCC
Q 001287 165 LSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG--GGKDLQLKDGVVDSPSEGDSTFLEGI 242 (1107)
Q Consensus 165 ~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (1107)
..|++++|+| ++.+|++++.||.|++||+.+++.+... +|
T Consensus 215 ------------~~v~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------------------ 256 (437)
T 3gre_A 215 ------------GAVSSICIDE--ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGD------------------------ 256 (437)
T ss_dssp ------------CCEEEEEECT--TSCEEEEEETTSCEEEEETTTTEEEEEEBCTT------------------------
T ss_pred ------------CceEEEEECC--CCCEEEEEcCCCeEEEEEcCCccEEEEEecCC------------------------
Confidence 7899999988 6888999999999999999998876644 33
Q ss_pred CCCCCCCCceeEEEee---cCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 243 SEHQPEEKEISALCWA---SSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 243 ~~~~~~~~~Vtsl~w~---spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
...|++++|. ++++.+|++|+.||.|++||+.++
T Consensus 257 ------~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 293 (437)
T 3gre_A 257 ------HAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG 293 (437)
T ss_dssp ------CEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT
T ss_pred ------CCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC
Confidence 5679999764 257889999999999999999755
No 72
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=3.6e-28 Score=278.63 Aligned_cols=233 Identities=8% Similarity=0.133 Sum_probs=167.4
Q ss_pred eeecCCCCCeEEEEEcCC----CCEEEEEECCCcEEEEeCCCccee-ee-----CCCCCCEEEEEEEeC----CCEEEEE
Q 001287 29 AVHYGIPATASILAFDHI----QRLLAIATLDGRIKVIGGDGIEGL-LI-----SPSQLPYKNLEFLQN----QGFLISI 94 (1107)
Q Consensus 29 ~~~~G~~~~i~~lafsp~----~~~LA~Gs~dg~I~iw~~~~~~~~-~~-----~~h~~~V~~l~fs~d----~~~L~S~ 94 (1107)
....||.+.|.+++|+|+ ..++++++.++.|+||+....+.+ .. ..|...|.+++|+|+ +.+|+++
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 566799999999999994 556666666789999999744332 22 237789999999999 6799999
Q ss_pred eCCCcEEEEEcCCCeeeeeec-cCCCeEEEEEec-CCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCC
Q 001287 95 TNDNEIQVWSLESRSLACCLK-WESNITAFSVIS-GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFP 172 (1107)
Q Consensus 95 s~d~~I~vWDl~s~~~~~~~~-~~~~Vt~l~~~~-~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~ 172 (1107)
+.|+.|++||+.+++.+..+. |...|++++|+| ++++|++|+.||.|++|++.. ++.......+..|.
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~-------- 161 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT--DTLVAIFGGVEGHR-------- 161 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT--TEEEEEECSTTSCS--------
T ss_pred cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec--CeEEEEeccccccc--------
Confidence 999999999999998887774 889999999999 899999999999999999864 34332200013444
Q ss_pred CCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCC-ccccccccccCCCCCCCCccccCCCCCCCCCCc
Q 001287 173 LLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGG-KDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 251 (1107)
Q Consensus 173 ~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1107)
..|.+++|+| ++.+|++++.||.|++||+.+++....... ..+....... +................+...
T Consensus 162 ----~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 233 (366)
T 3k26_A 162 ----DEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNR--PFISQKIHFPDFSTRDIHRNY 233 (366)
T ss_dssp ----SCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSS--CCCCEEECCCSEEECSSCSSC
T ss_pred ----CceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcc--cccceeeccCccccccCCcce
Confidence 7899999988 688899999999999999988654321100 0000000000 000000000001111124778
Q ss_pred eeEEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 252 ISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 252 Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
|++++|. +++|++++.||.|++||+.+.
T Consensus 234 v~~~~~~---~~~l~~~~~d~~i~~wd~~~~ 261 (366)
T 3k26_A 234 VDCVRWL---GDLILSKSCENAIVCWKPGKM 261 (366)
T ss_dssp CCEEEEE---TTEEEEECSSSEEEEEEESST
T ss_pred EEEEEEc---CCEEEEEecCCEEEEEeCCCc
Confidence 9999985 779999999999999998754
No 73
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=5.9e-28 Score=279.88 Aligned_cols=164 Identities=10% Similarity=0.153 Sum_probs=137.7
Q ss_pred eeCCCCCCEEEEEEEeCC-CEEEEEeCCCcEEEEEcCCCeeeeee---ccCCCeEEEEEec-CCCEEEEEcCCCcEEEEE
Q 001287 71 LISPSQLPYKNLEFLQNQ-GFLISITNDNEIQVWSLESRSLACCL---KWESNITAFSVIS-GSHFMYIGDENGLMSVIK 145 (1107)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~-~~L~S~s~d~~I~vWDl~s~~~~~~~---~~~~~Vt~l~~~~-~~~~l~~g~~dg~V~vw~ 145 (1107)
.+.+|..+|.+++|+|++ .+|++++.|+.|+|||+.+++....+ .|...|++++|+| ++++|++|+.||.|++|+
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 147 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD 147 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEE
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEE
Confidence 567899999999999998 89999999999999999988776665 4889999999999 679999999999999999
Q ss_pred eecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccc
Q 001287 146 YDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKD 225 (1107)
Q Consensus 146 ~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~ 225 (1107)
+.. ..+.. +..+. .+...|.+++|+| ++.+|++++.||.|++||+....+..+.+|
T Consensus 148 ~~~--~~~~~----~~~~~---------~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h------- 203 (383)
T 3ei3_B 148 FSG--SVIQV----FAKTD---------SWDYWYCCVDVSV--SRQMLATGDSTGRLLLLGLDGHEIFKEKLH------- 203 (383)
T ss_dssp TTS--CEEEE----EECCC---------CSSCCEEEEEEET--TTTEEEEEETTSEEEEEETTSCEEEEEECS-------
T ss_pred CCC--CceEE----EeccC---------CCCCCeEEEEECC--CCCEEEEECCCCCEEEEECCCCEEEEeccC-------
Confidence 873 22221 22111 1126799999998 678899999999999999976666666666
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCC-EEEEEEcCCcEEEEeCCCC
Q 001287 226 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~-~l~sg~~dG~I~lWd~~~~ 282 (1107)
...|++++|. |++. +|++|+.||.|++||+.+.
T Consensus 204 -----------------------~~~v~~~~~~-~~~~~~l~s~~~d~~i~iwd~~~~ 237 (383)
T 3ei3_B 204 -----------------------KAKVTHAEFN-PRCDWLMATSSVDATVKLWDLRNI 237 (383)
T ss_dssp -----------------------SSCEEEEEEC-SSCTTEEEEEETTSEEEEEEGGGC
T ss_pred -----------------------CCcEEEEEEC-CCCCCEEEEEeCCCEEEEEeCCCC
Confidence 7789999986 9998 9999999999999999643
No 74
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.96 E-value=6.5e-28 Score=280.56 Aligned_cols=217 Identities=13% Similarity=0.121 Sum_probs=167.2
Q ss_pred eeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcc-------eeeeCCCCCCEEEEEEEeC----C---CEEEEE
Q 001287 29 AVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-------GLLISPSQLPYKNLEFLQN----Q---GFLISI 94 (1107)
Q Consensus 29 ~~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~-------~~~~~~h~~~V~~l~fs~d----~---~~L~S~ 94 (1107)
....||...|++++|+| ++||+|+.||.|+||+....+ ......|..+|.+++|+++ + .+|+++
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~ 87 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 87 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE
Confidence 34468999999999999 899999999999999997655 5667789999999999999 9 999999
Q ss_pred eCCCcEEEEEcCCCee-----eeee-cc-----CCCeEEEEEe----cCCCE-EEEEcCCCcEEEEEeec------CCCc
Q 001287 95 TNDNEIQVWSLESRSL-----ACCL-KW-----ESNITAFSVI----SGSHF-MYIGDENGLMSVIKYDA------DEGK 152 (1107)
Q Consensus 95 s~d~~I~vWDl~s~~~-----~~~~-~~-----~~~Vt~l~~~----~~~~~-l~~g~~dg~V~vw~~d~------~~~~ 152 (1107)
+.|+.|++||+.+++. +..+ .+ ...|++++|+ |++++ |++|+.+|.|++|++.. ....
T Consensus 88 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 167 (397)
T 1sq9_A 88 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 167 (397)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccccee
Confidence 9999999999998875 5555 45 4899999999 99999 99999999999999985 2111
Q ss_pred eeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCC
Q 001287 153 LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPS 232 (1107)
Q Consensus 153 l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~ 232 (1107)
.......+.+ .......+...|.+++|+| ++ ++++++.||.|++||+.+++.+......
T Consensus 168 ~~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------- 226 (397)
T 1sq9_A 168 NWSPTLELQG-----TVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFESQ------------- 226 (397)
T ss_dssp CCCCEEEEEE-----EECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEECC-------------
T ss_pred eccCcceeee-----eeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCceeEEEecc-------------
Confidence 1000001211 0000112237899999998 56 8999999999999999988775543110
Q ss_pred CCCCccccCCCCCCCC---CCceeEEEeecCCCCEEEEEEcC---CcEEEEeCCCC
Q 001287 233 EGDSTFLEGISEHQPE---EKEISALCWASSSGSILAVGYID---GDILLWNTSTT 282 (1107)
Q Consensus 233 ~~~~~~~~~~~~~~~~---~~~Vtsl~w~spdg~~l~sg~~d---G~I~lWd~~~~ 282 (1107)
..+ ...|++++|. |++.+|++++.| |.|++||+.+.
T Consensus 227 -------------~~h~~~~~~i~~i~~~-~~~~~l~~~~~d~~~g~i~i~d~~~~ 268 (397)
T 1sq9_A 227 -------------HSMINNSNSIRSVKFS-PQGSLLAIAHDSNSFGCITLYETEFG 268 (397)
T ss_dssp -------------C---CCCCCEEEEEEC-SSTTEEEEEEEETTEEEEEEEETTTC
T ss_pred -------------ccccccCCccceEEEC-CCCCEEEEEecCCCCceEEEEECCCC
Confidence 001 5579999985 999999999999 99999999754
No 75
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.96 E-value=1.1e-27 Score=273.92 Aligned_cols=308 Identities=15% Similarity=0.197 Sum_probs=222.6
Q ss_pred ccCCCeEEEEEecCCCE-EEEEcC---CCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCC-C
Q 001287 115 KWESNITAFSVISGSHF-MYIGDE---NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS-S 189 (1107)
Q Consensus 115 ~~~~~Vt~l~~~~~~~~-l~~g~~---dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~-~ 189 (1107)
.|...|++++|+|++.. +++|+. ||.|++|+++.. ++... . ...|. ..|.+++|+|.. +
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~--~~~~~-~-~~~~~------------~~v~~~~~~~~~~~ 79 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG--DLKLL-R-EIEKA------------KPIKCGTFGATSLQ 79 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSS--SEEEE-E-EEEES------------SCEEEEECTTCCTT
T ss_pred CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCC--cccce-e-eeccc------------CcEEEEEEcCCCCC
Confidence 58899999999999864 556665 999999999853 33221 1 12343 789999999952 2
Q ss_pred CCEEEEEECCCeEEEEEccCCE-E-EEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEee-----cCCC
Q 001287 190 GNRVLIAYENALVILWDVSEAQ-I-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA-----SSSG 262 (1107)
Q Consensus 190 ~~~ll~~~~dg~V~vwdl~~~~-~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~-----spdg 262 (1107)
+.+|++++.||.|++||+.+++ . ..+.+| ...|++++|. +|++
T Consensus 80 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------------------------~~~v~~~~~~~~~~~s~~~ 129 (357)
T 3i2n_A 80 QRYLATGDFGGNLHIWNLEAPEMPVYSVKGH------------------------------KEIINAIDGIGGLGIGEGA 129 (357)
T ss_dssp TCCEEEEETTSCEEEECTTSCSSCSEEECCC------------------------------SSCEEEEEEESGGGCC-CC
T ss_pred CceEEEecCCCeEEEEeCCCCCccEEEEEec------------------------------ccceEEEeeccccccCCCc
Confidence 6789999999999999999875 3 344455 7789999663 4899
Q ss_pred CEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcce
Q 001287 263 SILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEV 342 (1107)
Q Consensus 263 ~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ 342 (1107)
++|++++.||.|++||+.+.... +..+....+.
T Consensus 130 ~~l~~~~~d~~i~vwd~~~~~~~----------~~~~~~~~~~------------------------------------- 162 (357)
T 3i2n_A 130 PEIVTGSRDGTVKVWDPRQKDDP----------VANMEPVQGE------------------------------------- 162 (357)
T ss_dssp CEEEEEETTSCEEEECTTSCSSC----------SEEECCCTTS-------------------------------------
T ss_pred cEEEEEeCCCeEEEEeCCCCCCc----------ceeccccCCC-------------------------------------
Confidence 99999999999999999754210 0000000000
Q ss_pred EEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCC
Q 001287 343 LTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVC 422 (1107)
Q Consensus 343 ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~ 422 (1107)
T Consensus 163 -------------------------------------------------------------------------------- 162 (357)
T 3i2n_A 163 -------------------------------------------------------------------------------- 162 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEe
Q 001287 423 PVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGY 502 (1107)
Q Consensus 423 ~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs 502 (1107)
....+.+..+ ..+++++++++++|+
T Consensus 163 ----------~~~~v~~~~~---------------------------------------------~~~~~~~~~~l~~~~ 187 (357)
T 3i2n_A 163 ----------NKRDCWTVAF---------------------------------------------GNAYNQEERVVCAGY 187 (357)
T ss_dssp ----------CCCCEEEEEE---------------------------------------------ECCCC-CCCEEEEEE
T ss_pred ----------CCCceEEEEE---------------------------------------------EeccCCCCCEEEEEc
Confidence 0000111111 014667888999999
Q ss_pred cCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEe---CCCeEEEeccCceEEEEEecCCCCCccceeecc
Q 001287 503 HDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF---INSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLE 579 (1107)
Q Consensus 503 ~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fsp---d~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~ 579 (1107)
.||.|++||+..+.+. ....|...|++++|+| ++.+|++++.||.|++|++........
T Consensus 188 ~d~~i~i~d~~~~~~~------------~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~------ 249 (357)
T 3i2n_A 188 DNGDIKLFDLRNMALR------------WETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG------ 249 (357)
T ss_dssp TTSEEEEEETTTTEEE------------EEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE------
T ss_pred cCCeEEEEECccCcee------------eecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc------
Confidence 9999999999988753 1345677999999999 999999999999999999987522100
Q ss_pred CcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCeEE----------------EEee
Q 001287 580 TKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGA-KLAVGFECGRVAVLDMNLLSVL----------------FFTD 642 (1107)
Q Consensus 580 ~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~-~la~Gs~dg~V~iwd~~~~~~~----------------~~~~ 642 (1107)
.....+..|...|++++|+|+++ +|++|+.||.|++||+..+... ....
T Consensus 250 --------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (357)
T 3i2n_A 250 --------------FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQ 315 (357)
T ss_dssp --------------EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEE
T ss_pred --------------eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceee
Confidence 01224458999999999999998 8999999999999999754311 1224
Q ss_pred cCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEE-EEcCCceEEEEeCCCcce
Q 001287 643 DISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVII-VLFKDAKISIVGGSSENM 704 (1107)
Q Consensus 643 ~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~-s~s~Dg~v~v~d~~~g~~ 704 (1107)
.+.+|..+|.+++|+ |++.+|+ +++.|+.|++||..+++.
T Consensus 316 ~~~~~~~~v~~~~~s----------------------~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 316 NVTLSTQPISSLDWS----------------------PDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EEECCSSCEEEEEEC----------------------SSSTTEEEEEETTSEEEEEEECC---
T ss_pred ccccCCCCeeEEEEc----------------------CCCCeEEEEecCCCcEEEEECCCccc
Confidence 556799999999999 4566677 899999999999987654
No 76
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.96 E-value=7.5e-28 Score=280.46 Aligned_cols=328 Identities=14% Similarity=0.124 Sum_probs=234.3
Q ss_pred CCcEEEEeCCC-cceeeeCCCCCCEEEEEEEe-CCCEEEEEeCCCcEEEEEcCCCeeeeeec--------------cCCC
Q 001287 56 DGRIKVIGGDG-IEGLLISPSQLPYKNLEFLQ-NQGFLISITNDNEIQVWSLESRSLACCLK--------------WESN 119 (1107)
Q Consensus 56 dg~I~iw~~~~-~~~~~~~~h~~~V~~l~fs~-d~~~L~S~s~d~~I~vWDl~s~~~~~~~~--------------~~~~ 119 (1107)
++.++||+.+. ........|.++|++++|+| ++.+|++++.|+.|++||+.++....... |...
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence 34567777743 34456677999999999999 99999999999999999999986654442 7889
Q ss_pred eEEEEEec-CCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCC-CCCEEEEEE
Q 001287 120 ITAFSVIS-GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS-SGNRVLIAY 197 (1107)
Q Consensus 120 Vt~l~~~~-~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~-~~~~ll~~~ 197 (1107)
|++++|+| ++.++++++.||.|++|+++. +..... +. +. ..+.++.|+|.. ++.++++++
T Consensus 102 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~---~~-~~------------~~~~~~~~~~~~~~~~~~~~~~ 163 (408)
T 4a11_B 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNT--LQTADV---FN-FE------------ETVYSHHMSPVSTKHCLVAVGT 163 (408)
T ss_dssp EEEEEECTTCTTCEEEEETTSEEEEEETTT--TEEEEE---EE-CS------------SCEEEEEECSSCSSCCEEEEEE
T ss_pred EEEEEEccCCCcEEEEEeCCCeEEEeeCCC--Ccccee---cc-CC------------CceeeeEeecCCCCCcEEEEEc
Confidence 99999999 778999999999999999874 343322 22 22 668999998853 455899999
Q ss_pred CCCeEEEEEccCCEEEE-EeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCC-EEEEEEcCCcEE
Q 001287 198 ENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGYIDGDIL 275 (1107)
Q Consensus 198 ~dg~V~vwdl~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~-~l~sg~~dG~I~ 275 (1107)
.+|.|++||+.+++... +.+| ...|++++|. |++. .|++|+.||.|+
T Consensus 164 ~~~~v~~~d~~~~~~~~~~~~~------------------------------~~~v~~~~~~-~~~~~ll~~~~~dg~i~ 212 (408)
T 4a11_B 164 RGPKVQLCDLKSGSCSHILQGH------------------------------RQEILAVSWS-PRYDYILATASADSRVK 212 (408)
T ss_dssp SSSSEEEEESSSSCCCEEECCC------------------------------CSCEEEEEEC-SSCTTEEEEEETTSCEE
T ss_pred CCCeEEEEeCCCcceeeeecCC------------------------------CCcEEEEEEC-CCCCcEEEEEcCCCcEE
Confidence 99999999999876543 3334 7789999986 9988 589999999999
Q ss_pred EEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCcccccc
Q 001287 276 LWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGME 355 (1107)
Q Consensus 276 lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~ 355 (1107)
+||+.+..... ..+..... . .. .
T Consensus 213 i~d~~~~~~~~----------~~~~~~~~--------------------~----------~~-----------------~ 235 (408)
T 4a11_B 213 LWDVRRASGCL----------ITLDQHNG--------------------K----------KS-----------------Q 235 (408)
T ss_dssp EEETTCSSCCS----------EECCTTTT--------------------C----------SC-----------------C
T ss_pred EEECCCCCccc----------cccccccc--------------------c----------cc-----------------e
Confidence 99997542110 00000000 0 00 0
Q ss_pred ccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCC
Q 001287 356 NLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDP 435 (1107)
Q Consensus 356 ~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (1107)
. ..
T Consensus 236 ~---------------------------------------------------------------------~~-------- 238 (408)
T 4a11_B 236 A---------------------------------------------------------------------VE-------- 238 (408)
T ss_dssp C---------------------------------------------------------------------TT--------
T ss_pred e---------------------------------------------------------------------ec--------
Confidence 0 00
Q ss_pred ceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCC
Q 001287 436 IMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYP 515 (1107)
Q Consensus 436 ~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~ 515 (1107)
....++...+..++++|++++|++|+.||.|++||+..+
T Consensus 239 -----------------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 277 (408)
T 4a11_B 239 -----------------------------------------SANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277 (408)
T ss_dssp -----------------------------------------TSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred -----------------------------------------cccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Confidence 000112222334467888999999999999999999987
Q ss_pred ceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCccee
Q 001287 516 VFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLC 595 (1107)
Q Consensus 516 ~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 595 (1107)
......... . .......+........+..+++++.++.|++|++... .+
T Consensus 278 ~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-------------------------~~ 326 (408)
T 4a11_B 278 ENTLVNYGK--V----CNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG-------------------------EQ 326 (408)
T ss_dssp CBCCCCCCC--C----CCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC-------------------------CE
T ss_pred ccceecccc--c----cccccccceeEEecCCCceEEEEecCCEEEEEECcCC-------------------------cc
Confidence 643111100 0 0111122333333445667778888999999999775 35
Q ss_pred EEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEE
Q 001287 596 RAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVL 638 (1107)
Q Consensus 596 ~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~ 638 (1107)
+..+..|...|++++|+|++++|++|+.||.|++||+..+..+
T Consensus 327 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 327 ITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPV 369 (408)
T ss_dssp EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC----
T ss_pred eeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCcc
Confidence 6778899999999999999999999999999999999988766
No 77
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.96 E-value=2.8e-28 Score=288.12 Aligned_cols=164 Identities=13% Similarity=0.202 Sum_probs=130.2
Q ss_pred eeCCCCCCEEEEEEEe-CCCEEEEEeCCCcEEEEEcCCCeeee---eeccCCCeEEEEEec-CCCEEEEEcCCCcEEEEE
Q 001287 71 LISPSQLPYKNLEFLQ-NQGFLISITNDNEIQVWSLESRSLAC---CLKWESNITAFSVIS-GSHFMYIGDENGLMSVIK 145 (1107)
Q Consensus 71 ~~~~h~~~V~~l~fs~-d~~~L~S~s~d~~I~vWDl~s~~~~~---~~~~~~~Vt~l~~~~-~~~~l~~g~~dg~V~vw~ 145 (1107)
...+|...|++|+|+| ++.+|++++.||+|+|||+.++.... ...|.+.|++++|+| ++++|++|+.||+|++|+
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence 3456888999999999 55689999999999999998875433 336889999999998 578999999999999999
Q ss_pred eecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccc
Q 001287 146 YDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKD 225 (1107)
Q Consensus 146 ~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~ 225 (1107)
+.. +.+.. + ...+. ....+.+++|+| ++.+|++|+.||.|++||+++..+..+.+|
T Consensus 194 ~~~--~~~~~--~-~~~~~----------~~~~~~~~~~~~--~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h------- 249 (435)
T 4e54_B 194 FKG--NILRV--F-ASSDT----------INIWFCSLDVSA--SSRMVVTGDNVGNVILLNMDGKELWNLRMH------- 249 (435)
T ss_dssp TTS--CEEEE--E-ECCSS----------CSCCCCCEEEET--TTTEEEEECSSSBEEEEESSSCBCCCSBCC-------
T ss_pred ccC--CceeE--E-eccCC----------CCccEEEEEECC--CCCEEEEEeCCCcEeeeccCcceeEEEecc-------
Confidence 863 22221 1 11111 125688999988 688899999999999999987655444455
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCC-EEEEEEcCCcEEEEeCCCC
Q 001287 226 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~-~l~sg~~dG~I~lWd~~~~ 282 (1107)
...|++++|. |++. +|++|+.||.|++||+.+.
T Consensus 250 -----------------------~~~v~~v~~~-p~~~~~~~s~s~d~~v~iwd~~~~ 283 (435)
T 4e54_B 250 -----------------------KKKVTHVALN-PCCDWFLATASVDQTVKIWDLRQV 283 (435)
T ss_dssp -----------------------SSCEEEEEEC-TTCSSEEEEEETTSBCCEEETTTC
T ss_pred -----------------------cceEEeeeec-CCCceEEEEecCcceeeEEecccc
Confidence 7789999986 8876 7889999999999999754
No 78
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.96 E-value=3.1e-27 Score=296.54 Aligned_cols=293 Identities=17% Similarity=0.218 Sum_probs=220.9
Q ss_pred ccCCCeEEEEEecCC-CEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEE
Q 001287 115 KWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1107)
Q Consensus 115 ~~~~~Vt~l~~~~~~-~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~l 193 (1107)
.|.+.|+++++++++ ++|++|+.||+|++|++.............+.+|. ..|.+++|+| ++.+|
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~------------~~v~~v~~s~--~g~~l 445 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHS------------HFVEDVVLSS--DGQFA 445 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCS------------SCEEEEEECT--TSSEE
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCC------------CcEEEEEECC--CCCEE
Confidence 688999999999875 79999999999999998754322111113356666 8899999988 68889
Q ss_pred EEEECCCeEEEEEccCCEEEE-EeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCC
Q 001287 194 LIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 272 (1107)
Q Consensus 194 l~~~~dg~V~vwdl~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG 272 (1107)
++|+.||.|+|||+.+++... +.+| ...|++++|. |++++|++|+.||
T Consensus 446 ~sgs~Dg~v~vwd~~~~~~~~~~~~h------------------------------~~~v~~~~~s-~~~~~l~s~s~D~ 494 (694)
T 3dm0_A 446 LSGSWDGELRLWDLAAGVSTRRFVGH------------------------------TKDVLSVAFS-LDNRQIVSASRDR 494 (694)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECC------------------------------SSCEEEEEEC-TTSSCEEEEETTS
T ss_pred EEEeCCCcEEEEECCCCcceeEEeCC------------------------------CCCEEEEEEe-CCCCEEEEEeCCC
Confidence 999999999999999987654 4566 7789999985 9999999999999
Q ss_pred cEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccc
Q 001287 273 DILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSS 352 (1107)
Q Consensus 273 ~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~ 352 (1107)
+|++||..... ...+. .. +..
T Consensus 495 ~i~iwd~~~~~------------~~~~~----------------------~~---------~~~---------------- 515 (694)
T 3dm0_A 495 TIKLWNTLGEC------------KYTIS----------------------EG---------GEG---------------- 515 (694)
T ss_dssp CEEEECTTSCE------------EEEEC----------------------SS---------TTS----------------
T ss_pred EEEEEECCCCc------------ceeec----------------------cC---------CCC----------------
Confidence 99999974220 00000 00 000
Q ss_pred cccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCccccc
Q 001287 353 GMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPI 432 (1107)
Q Consensus 353 ~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (1107)
T Consensus 516 -------------------------------------------------------------------------------- 515 (694)
T 3dm0_A 516 -------------------------------------------------------------------------------- 515 (694)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCC--cEEEEEecCCcEEEE
Q 001287 433 SDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVD--RVYLAGYHDGSVRIW 510 (1107)
Q Consensus 433 ~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~--~~laTgs~DgtIriW 510 (1107)
|...+++. ++++++ .++++|+.||+|++|
T Consensus 516 h~~~v~~~-------------------------------------------------~~~~~~~~~~l~s~s~d~~v~vw 546 (694)
T 3dm0_A 516 HRDWVSCV-------------------------------------------------RFSPNTLQPTIVSASWDKTVKVW 546 (694)
T ss_dssp CSSCEEEE-------------------------------------------------EECSCSSSCEEEEEETTSCEEEE
T ss_pred CCCcEEEE-------------------------------------------------EEeCCCCcceEEEEeCCCeEEEE
Confidence 01111111 223332 379999999999999
Q ss_pred eCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccC
Q 001287 511 DATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEG 590 (1107)
Q Consensus 511 d~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (1107)
|+....+. ..+.+|...|++++|+|++++|++|+.||.|+||++...
T Consensus 547 d~~~~~~~-----------~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~---------------------- 593 (694)
T 3dm0_A 547 NLSNCKLR-----------STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG---------------------- 593 (694)
T ss_dssp ETTTCCEE-----------EEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT----------------------
T ss_pred ECCCCcEE-----------EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----------------------
Confidence 99987755 457799999999999999999999999999999999775
Q ss_pred CcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecC----------------CCCCCceEEE
Q 001287 591 KISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDI----------------SGSSSPIISM 654 (1107)
Q Consensus 591 ~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~----------------~~h~~~V~~l 654 (1107)
.++..+ .+...|++++|+|++.+|+++++++ |+|||+.++.++...... ..+...|+++
T Consensus 594 ---~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 668 (694)
T 3dm0_A 594 ---KKLYSL-EANSVIHALCFSPNRYWLCAATEHG-IKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSL 668 (694)
T ss_dssp ---EEEECC-BCSSCEEEEEECSSSSEEEEEETTE-EEEEETTTTEEEEEECCCCC----------------CCCCEEEE
T ss_pred ---ceEEEe-cCCCcEEEEEEcCCCcEEEEEcCCC-EEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeE
Confidence 122322 3466899999999999888887654 999999999887543210 0111236788
Q ss_pred EEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCC
Q 001287 655 TWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1107)
Q Consensus 655 ~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~ 700 (1107)
+|+ |++.+|++|+.||.|++||..
T Consensus 669 ~~s----------------------pdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 669 NWS----------------------ADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEC----------------------TTSSEEEEEETTSEEEEEEC-
T ss_pred EEc----------------------CCCCEEEEEcCCCeEEEEecc
Confidence 888 678999999999999999974
No 79
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.96 E-value=3.4e-27 Score=277.43 Aligned_cols=151 Identities=16% Similarity=0.271 Sum_probs=125.4
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCccee---eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee
Q 001287 38 ASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL---LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1107)
Q Consensus 38 i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~---~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~ 114 (1107)
.++|+|+++ .+||+|. |+.|+|||....++. ...+|...|++|+|+|++.+|++++.|++|+|||+.+++.+..+
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~ 185 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 185 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE
Confidence 467999975 6999987 899999999765543 34568889999999999999999999999999999999988777
Q ss_pred -ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEE
Q 001287 115 -KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1107)
Q Consensus 115 -~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~l 193 (1107)
.|...|.+++++ +.++++|+.++.+++|+.......+ ..+.+|. ..+.++.|+| ++.++
T Consensus 186 ~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~----~~~~~h~------------~~~~~~~~~~--~g~~l 245 (420)
T 4gga_A 186 TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHV----ATLSGHS------------QEVCGLRWAP--DGRHL 245 (420)
T ss_dssp CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEE----EEEECCS------------SCEEEEEECT--TSSEE
T ss_pred eCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceee----EEecccc------------cceeeeeecC--CCCee
Confidence 678889888775 6799999999999999976533222 2255555 7899999988 68889
Q ss_pred EEEECCCeEEEEEccCC
Q 001287 194 LIAYENALVILWDVSEA 210 (1107)
Q Consensus 194 l~~~~dg~V~vwdl~~~ 210 (1107)
++++.|+.|++||...+
T Consensus 246 ~s~~~D~~v~i~~~~~~ 262 (420)
T 4gga_A 246 ASGGNDNLVNVWPSAPG 262 (420)
T ss_dssp EEEETTSCEEEEESSCC
T ss_pred eeeeccccceEEeeccc
Confidence 99999999999997654
No 80
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=2.5e-28 Score=282.11 Aligned_cols=162 Identities=12% Similarity=0.115 Sum_probs=128.1
Q ss_pred CCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCC--eeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCC
Q 001287 74 PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR--SLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADE 150 (1107)
Q Consensus 74 ~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~--~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~ 150 (1107)
.|.++|++++|+|++.+|++++.|+.|+|||+.++ +.+..+ .|...|++++|+|++++|++|+.||.|++|++....
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~ 88 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG 88 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 36779999999999999999999999999999998 565555 688999999999999999999999999999988632
Q ss_pred CceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEE----EEEeC-Cccccccc
Q 001287 151 GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI----IFVGG-GKDLQLKD 225 (1107)
Q Consensus 151 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~----~~~~g-~~~~~~~~ 225 (1107)
.+.. ...+..|. ..|.+++|+| ++.+|++++.|+.|++||+.+++. ..+.+ |
T Consensus 89 -~~~~-~~~~~~~~------------~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h------- 145 (377)
T 3dwl_C 89 -TWKQ-TLVLLRLN------------RAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPL------- 145 (377)
T ss_dssp -CCCC-EEECCCCS------------SCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSC-------
T ss_pred -ceee-eeEecccC------------CceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeeccc-------
Confidence 0111 12344554 7899999998 677899999999999999998762 33333 3
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 226 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
...|++++|. |++++|++|+.||.|++||+...
T Consensus 146 -----------------------~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~ 178 (377)
T 3dwl_C 146 -----------------------RSTILSLDWH-PNNVLLAAGCADRKAYVLSAYVR 178 (377)
T ss_dssp -----------------------CSCEEEEEEC-TTSSEEEEEESSSCEEEEEECCS
T ss_pred -----------------------CCCeEEEEEc-CCCCEEEEEeCCCEEEEEEEEec
Confidence 7789999986 99999999999999999999754
No 81
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.4e-29 Score=291.28 Aligned_cols=194 Identities=10% Similarity=0.069 Sum_probs=148.3
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCee
Q 001287 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL 110 (1107)
Q Consensus 31 ~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~ 110 (1107)
+..+...|.+++|+|||+++|+|+.|++|+ +....+.+ .+|...|.+++|+|+| .++.+.+|+.+....
T Consensus 11 ~~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l--~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~ 79 (588)
T 2j04_A 11 RKEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI--NCNSKNLFHVKEFPLE-------FENKLDFELAQQNGL 79 (588)
T ss_dssp SCCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC--SSBGGGTEEEEEECCC-------CCCTTTTSCCCSSCS
T ss_pred HhHhhccEEEEEECCCCCEEEEEcCCceee--ccccccee--cCCCccEEEEEECCCC-------CcceEEEEeCCCceE
Confidence 344567899999999999999999999999 64433332 6899999999999998 577777777654443
Q ss_pred eeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCC
Q 001287 111 ACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1107)
Q Consensus 111 ~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~ 190 (1107)
+ .+.+...|++++|+|++++|++++.||.|+||+.+ + +.. .+. |.. ......|.+++|+| +|
T Consensus 80 ~-~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~---~-~l~---~l~-~~~-------~~~~~sv~svafSP--DG 141 (588)
T 2j04_A 80 L-NSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDN---K-MLT---NLD-SKG-------NLSSRTYHCFEWNP--IE 141 (588)
T ss_dssp S-TTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETT---E-EEE---ECC-CSS-------CSTTTCEEEEEECS--SS
T ss_pred e-ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC---c-eee---ecc-CCC-------ccccccEEEEEEcC--CC
Confidence 3 33457889999999999999999999999999943 2 222 133 320 00013599999999 78
Q ss_pred CEEEEEECCCeEEEEEccCCEE--------EEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCC
Q 001287 191 NRVLIAYENALVILWDVSEAQI--------IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1107)
Q Consensus 191 ~~ll~~~~dg~V~vwdl~~~~~--------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg 262 (1107)
++|++|+.||+|++||+.++.. ..+..|. ..+...|.+++|. |||
T Consensus 142 ~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~--------------------------~gh~~~V~sVawS-Pdg 194 (588)
T 2j04_A 142 SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSD--------------------------AGSKDWVTHIVWY-EDV 194 (588)
T ss_dssp SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSC--------------------------TTCCCCEEEEEEE-TTE
T ss_pred CEEEEEcCCCEEEEEECCCCccccccceeeeeeeccc--------------------------ccccccEEEEEEc-CCc
Confidence 8999999999999999998742 2232220 0116789999996 999
Q ss_pred CEEEEEEcCCcEEEEeCCCC
Q 001287 263 SILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 263 ~~l~sg~~dG~I~lWd~~~~ 282 (1107)
+++++.|+++++|++.+.
T Consensus 195 --Laass~D~tVrlWd~~~~ 212 (588)
T 2j04_A 195 --LVAALSNNSVFSMTVSAS 212 (588)
T ss_dssp --EEEEETTCCEEEECCCSS
T ss_pred --EEEEeCCCeEEEEECCCC
Confidence 889999999999998654
No 82
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=7e-29 Score=286.83 Aligned_cols=223 Identities=12% Similarity=0.111 Sum_probs=161.8
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCc---ceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCC
Q 001287 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI---EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1107)
Q Consensus 31 ~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~---~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s 107 (1107)
+..+.+.|++++|+|++++||+|+.||.|+||+.... ....+.+|..+|.+++|+|++.+|++++.|+.|++||+.+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 4445678999999999999999999999999999754 3446678999999999999999999999999999999999
Q ss_pred Ce----eeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCc-eeecceeecc-cccccccCCCCCCCCCeEE
Q 001287 108 RS----LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK-LFQLPYNISA-DALSEKAGFPLLSHQPVVG 181 (1107)
Q Consensus 108 ~~----~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~-l~~~~~~i~~-~~~~~~~~~~~~~~~~V~~ 181 (1107)
+. ......|...|++++|+|++++|++|+.||.|++|+++..... +. ..+.. |. ..|.+
T Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~h~------------~~v~~ 151 (377)
T 3dwl_C 87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVS---KHLKRPLR------------STILS 151 (377)
T ss_dssp --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCC---EEECSSCC------------SCEEE
T ss_pred CCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceee---eEeecccC------------CCeEE
Confidence 87 3344478899999999999999999999999999998753210 11 22443 44 78999
Q ss_pred EEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCC
Q 001287 182 VLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS 261 (1107)
Q Consensus 182 v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spd 261 (1107)
++|+| ++.+|++++.||.|++||+............ +.+.....+.....- .+...|++++|. |+
T Consensus 152 ~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~-~~~~~v~~~~~s-p~ 216 (377)
T 3dwl_C 152 LDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEAS-----------VWGSRLPFNTVCAEY-PSGGWVHAVGFS-PS 216 (377)
T ss_dssp EEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSC-----------SSCSCCCEEEEEECC-CCSSSEEEEEEC-TT
T ss_pred EEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCcccc-----------ccccccchhhhhhcc-cCCceEEEEEEC-CC
Confidence 99998 6888999999999999998643211000000 000000000000000 127789999985 99
Q ss_pred CCEEEEEEcCCcEEEEeCCCCC
Q 001287 262 GSILAVGYIDGDILLWNTSTTA 283 (1107)
Q Consensus 262 g~~l~sg~~dG~I~lWd~~~~~ 283 (1107)
|++|++++.||.|++||+.++.
T Consensus 217 ~~~l~~~~~d~~i~iwd~~~~~ 238 (377)
T 3dwl_C 217 GNALAYAGHDSSVTIAYPSAPE 238 (377)
T ss_dssp SSCEEEEETTTEEC-CEECSTT
T ss_pred CCEEEEEeCCCcEEEEECCCCC
Confidence 9999999999999999998663
No 83
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.96 E-value=4.8e-27 Score=262.31 Aligned_cols=126 Identities=13% Similarity=0.112 Sum_probs=103.9
Q ss_pred eeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCC--eeeeee-ccCCCeEEEEEecC--CCEEEEEcCCCcEEEE
Q 001287 70 LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR--SLACCL-KWESNITAFSVISG--SHFMYIGDENGLMSVI 144 (1107)
Q Consensus 70 ~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~--~~~~~~-~~~~~Vt~l~~~~~--~~~l~~g~~dg~V~vw 144 (1107)
..+.+|..+|.+++|++++.+|++++.|++|+|||+..+ +.+..+ .|.+.|++++|++. +++|++|+.||+|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 456789999999999999999999999999999999754 455555 78899999999863 7899999999999999
Q ss_pred EeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCC
Q 001287 145 KYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA 210 (1107)
Q Consensus 145 ~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~ 210 (1107)
++........ ..+..|. ..|.+++|+|...+.+|++++.||.|++||+.+.
T Consensus 83 d~~~~~~~~~---~~~~~h~------------~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~ 133 (297)
T 2pm7_B 83 KEENGRWSQI---AVHAVHS------------ASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN 133 (297)
T ss_dssp EBSSSCBCCC---EEECCCS------------SCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSS
T ss_pred EcCCCceEEE---EEeecCC------------CceeEEEeCcCCCCcEEEEEECCCcEEEEEecCC
Confidence 9874321111 2345554 7899999999544788999999999999998765
No 84
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.8e-26 Score=258.49 Aligned_cols=197 Identities=20% Similarity=0.188 Sum_probs=160.6
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcc-eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCC
Q 001287 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR 108 (1107)
Q Consensus 30 ~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~ 108 (1107)
...||...|++++| |++++||+|+.||.|+||+..... ......|..+|.+++|+|++.+|++++.|+.|++||+...
T Consensus 13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~ 91 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFAT 91 (313)
T ss_dssp EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCC
T ss_pred HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeec
Confidence 34689999999999 999999999999999999996654 4466678999999999999999999999999999998765
Q ss_pred ---eeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEc
Q 001287 109 ---SLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1107)
Q Consensus 109 ---~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f 184 (1107)
+.+..+ .|...|+++++ +++++++|+.+|.|++|+ .+... ..+..|. ..|.++.|
T Consensus 92 ~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d----~~~~~---~~~~~~~------------~~v~~~~~ 150 (313)
T 3odt_A 92 SGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK----EGSLV---YNLQAHN------------ASVWDAKV 150 (313)
T ss_dssp TTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE----TTEEE---EEEECCS------------SCEEEEEE
T ss_pred CCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc----CCcEE---EecccCC------------CceeEEEE
Confidence 333333 68889999999 577999999999999998 23333 2355555 78999999
Q ss_pred ccCCCCCEEEEEECCCeEEEEEccCCEEEEEeC-CccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCC
Q 001287 185 HPNSSGNRVLIAYENALVILWDVSEAQIIFVGG-GKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS 263 (1107)
Q Consensus 185 ~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~ 263 (1107)
+|. ++.++++++.||.|++||... ....... | ...|++++|. |++.
T Consensus 151 ~~~-~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~------------------------------~~~i~~~~~~-~~~~ 197 (313)
T 3odt_A 151 VSF-SENKFLTASADKTIKLWQNDK-VIKTFSGIH------------------------------NDVVRHLAVV-DDGH 197 (313)
T ss_dssp EET-TTTEEEEEETTSCEEEEETTE-EEEEECSSC------------------------------SSCEEEEEEE-ETTE
T ss_pred ccC-CCCEEEEEECCCCEEEEecCc-eEEEEeccC------------------------------cccEEEEEEc-CCCe
Confidence 885 567799999999999999332 2222222 3 6789999986 8888
Q ss_pred EEEEEEcCCcEEEEeCCCC
Q 001287 264 ILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 264 ~l~sg~~dG~I~lWd~~~~ 282 (1107)
+++++.||.|++||+.++
T Consensus 198 -~~~~~~dg~i~i~d~~~~ 215 (313)
T 3odt_A 198 -FISCSNDGLIKLVDMHTG 215 (313)
T ss_dssp -EEEEETTSEEEEEETTTC
T ss_pred -EEEccCCCeEEEEECCch
Confidence 999999999999999643
No 85
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1e-26 Score=271.48 Aligned_cols=293 Identities=13% Similarity=0.134 Sum_probs=217.9
Q ss_pred eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeec--cCCCeEEEEEecCCCEEEEEcCCCcEEEEEe
Q 001287 69 GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK--WESNITAFSVISGSHFMYIGDENGLMSVIKY 146 (1107)
Q Consensus 69 ~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~--~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~ 146 (1107)
++...+|...+....++.++..+++++.|+.|++||+.+++...... +...|++++|+|++++|++|+.+|.|++|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 84 VLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp EEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 33444566544443344444568999999999999999998876663 6789999999999999999999999999998
Q ss_pred ecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccC-CE-EEEEeCCcccccc
Q 001287 147 DADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE-AQ-IIFVGGGKDLQLK 224 (1107)
Q Consensus 147 d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~-~~-~~~~~g~~~~~~~ 224 (1107)
.. ++... .+..|. ..|.++.|+ +..+++++.||.|++||+.. .. .....+|
T Consensus 164 ~~--~~~~~---~~~~~~------------~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------ 216 (401)
T 4aez_A 164 ES--QTKLR---TMAGHQ------------ARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQIGTLQGH------ 216 (401)
T ss_dssp TT--CCEEE---EECCCS------------SCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECC------
T ss_pred cC--CeEEE---EecCCC------------CceEEEEEC----CCEEEEEcCCCCEEEEecccCcceeeEEcCC------
Confidence 64 34432 255555 789999994 45799999999999999984 33 3445555
Q ss_pred ccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccc
Q 001287 225 DGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSA 304 (1107)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~ 304 (1107)
...|++++|. |++.+|++|+.||.|++||+.+.. .+.
T Consensus 217 ------------------------~~~v~~~~~~-~~~~~l~s~~~d~~v~iwd~~~~~-----------~~~------- 253 (401)
T 4aez_A 217 ------------------------SSEVCGLAWR-SDGLQLASGGNDNVVQIWDARSSI-----------PKF------- 253 (401)
T ss_dssp ------------------------SSCEEEEEEC-TTSSEEEEEETTSCEEEEETTCSS-----------EEE-------
T ss_pred ------------------------CCCeeEEEEc-CCCCEEEEEeCCCeEEEccCCCCC-----------ccE-------
Confidence 7789999986 999999999999999999996431 000
Q ss_pred cCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCC
Q 001287 305 ERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATV 384 (1107)
Q Consensus 305 ~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~ 384 (1107)
.+ . .....+.
T Consensus 254 -------~~-------------------~--------------------------------~~~~~v~------------ 263 (401)
T 4aez_A 254 -------TK-------------------T--------------------------------NHNAAVK------------ 263 (401)
T ss_dssp -------EE-------------------C--------------------------------CCSSCCC------------
T ss_pred -------Ee-------------------c--------------------------------CCcceEE------------
Confidence 00 0 0000011
Q ss_pred CCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccc
Q 001287 385 GNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKL 464 (1107)
Q Consensus 385 ~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (1107)
T Consensus 264 -------------------------------------------------------------------------------- 263 (401)
T 4aez_A 264 -------------------------------------------------------------------------------- 263 (401)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccCCccccccCCCCCCCCccccCCC-CcEEEEEe--cCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEE
Q 001287 465 HSSHTQAGHIKWPLSGGVPSPVPITKCHSV-DRVYLAGY--HDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVST 541 (1107)
Q Consensus 465 ~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~-~~~laTgs--~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~ 541 (1107)
.++++|+ ..++++|+ .||.|++||+..+.+. ..+ .|...|++
T Consensus 264 -----------------------~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~-----------~~~-~~~~~v~~ 308 (401)
T 4aez_A 264 -----------------------AVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV-----------NTV-DAGSQVTS 308 (401)
T ss_dssp -----------------------EEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE-----------EEE-ECSSCEEE
T ss_pred -----------------------EEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE-----------EEE-eCCCcEEE
Confidence 1123332 23777765 7999999999987754 112 24568999
Q ss_pred EEEEeCCCeEEE--eccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEE
Q 001287 542 LSFCFINSSLAV--GNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLA 619 (1107)
Q Consensus 542 l~fspd~~~Las--g~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la 619 (1107)
++|+|++++|++ |+.||.|+||++..... .....+..|...|++++|+|++++|+
T Consensus 309 ~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~-----------------------~~~~~~~~h~~~v~~~~~s~dg~~l~ 365 (401)
T 4aez_A 309 LIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL-----------------------TKQVDIPAHDTRVLYSALSPDGRILS 365 (401)
T ss_dssp EEECSSSSEEEEEECTTTCEEEEEEEETTEE-----------------------EEEEEEECCSSCCCEEEECTTSSEEE
T ss_pred EEECCCCCeEEEEeecCCCcEEEEecCCccc-----------------------eeEEEecCCCCCEEEEEECCCCCEEE
Confidence 999999999999 55899999999987411 13345678999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCeEEE
Q 001287 620 VGFECGRVAVLDMNLLSVLF 639 (1107)
Q Consensus 620 ~Gs~dg~V~iwd~~~~~~~~ 639 (1107)
+|+.||.|++||+.++..+.
T Consensus 366 s~~~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 366 TAASDENLKFWRVYDGDHVK 385 (401)
T ss_dssp EECTTSEEEEEECCC-----
T ss_pred EEeCCCcEEEEECCCCcccc
Confidence 99999999999999887763
No 86
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.95 E-value=1.4e-26 Score=263.32 Aligned_cols=289 Identities=12% Similarity=0.130 Sum_probs=218.6
Q ss_pred eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCe----eeeeeccCCCeEEEEEecCCC-EEEEEcCCCcEEEEE
Q 001287 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS----LACCLKWESNITAFSVISGSH-FMYIGDENGLMSVIK 145 (1107)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~----~~~~~~~~~~Vt~l~~~~~~~-~l~~g~~dg~V~vw~ 145 (1107)
+..+|.++|++++|+|++.+|++++.|+.|+|||+.++. ......|...|++++|+|+++ +|++|+.+|.|++|+
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 345899999999999999999999999999999999887 666668899999999999999 999999999999999
Q ss_pred e-ecCCCceeecceeecc--cccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccC---------CEEE
Q 001287 146 Y-DADEGKLFQLPYNISA--DALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE---------AQII 213 (1107)
Q Consensus 146 ~-d~~~~~l~~~~~~i~~--~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~---------~~~~ 213 (1107)
+ +. +... .+.. |. ..|.+++|+| +.+|++++.||.|++||+.+ ++.+
T Consensus 86 ~~~~--~~~~----~~~~~~~~------------~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (342)
T 1yfq_A 86 LIGS--PSFQ----ALTNNEAN------------LGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144 (342)
T ss_dssp SSSS--SSEE----ECBSCCCC------------SCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred eccC--CceE----eccccCCC------------CceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCee
Confidence 8 64 2322 2444 54 7899999988 66799999999999999886 3322
Q ss_pred EEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCC-CCCCCCccCCC
Q 001287 214 FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST-TASTKGQQTGS 292 (1107)
Q Consensus 214 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~-~~~~~~~~~~~ 292 (1107)
....| ...|.+++|. +++ +++++.||.|++||+.+ .....
T Consensus 145 ~~~~~------------------------------~~~v~~~~~~-~~~--l~~~~~d~~i~i~d~~~~~~~~~------ 185 (342)
T 1yfq_A 145 NNTKV------------------------------KNKIFTMDTN-SSR--LIVGMNNSQVQWFRLPLCEDDNG------ 185 (342)
T ss_dssp SSSSS------------------------------CCCEEEEEEC-SSE--EEEEESTTEEEEEESSCCTTCCC------
T ss_pred eEEee------------------------------CCceEEEEec-CCc--EEEEeCCCeEEEEECCccccccc------
Confidence 21112 6789999986 776 99999999999999975 31000
Q ss_pred CCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccc
Q 001287 293 RNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFA 372 (1107)
Q Consensus 293 ~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~ 372 (1107)
. .. ...
T Consensus 186 ----~--------------~~------------------~~~-------------------------------------- 191 (342)
T 1yfq_A 186 ----T--------------IE------------------ESG-------------------------------------- 191 (342)
T ss_dssp ----E--------------EE------------------ECS--------------------------------------
T ss_pred ----e--------------ee------------------ecC--------------------------------------
Confidence 0 00 000
Q ss_pred eEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCc
Q 001287 373 DMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSS 452 (1107)
Q Consensus 373 d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~ 452 (1107)
+..
T Consensus 192 ------------------------------------------------------------~~~----------------- 194 (342)
T 1yfq_A 192 ------------------------------------------------------------LKY----------------- 194 (342)
T ss_dssp ------------------------------------------------------------CSS-----------------
T ss_pred ------------------------------------------------------------CCC-----------------
Confidence 000
Q ss_pred hhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCC-CCcEEEEEecCCcEEEEeCCCC------ceeEEEeecc
Q 001287 453 KGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHS-VDRVYLAGYHDGSVRIWDATYP------VFKLICALDA 525 (1107)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~-~~~~laTgs~DgtIriWd~~~~------~l~~~~~l~~ 525 (1107)
.+..+++++ +++++++|+.||.|++||+... .....+....
T Consensus 195 --------------------------------~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 242 (342)
T 1yfq_A 195 --------------------------------QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR 242 (342)
T ss_dssp --------------------------------CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCC
T ss_pred --------------------------------ceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccc
Confidence 001124566 7779999999999999999876 3331111100
Q ss_pred ceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeec-Cc
Q 001287 526 EVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLV-NS 604 (1107)
Q Consensus 526 ~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h-~~ 604 (1107)
.. ..-.+|...|++++|+|++++|++++.||.|++|++... .++..+..| ..
T Consensus 243 ~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-------------------------~~~~~~~~~h~~ 295 (342)
T 1yfq_A 243 LN--LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR-------------------------KKIKNFAKFNED 295 (342)
T ss_dssp CC--TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT-------------------------EEEEECCCCSSS
T ss_pred cc--ccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH-------------------------hHhhhhhcccCC
Confidence 00 001134559999999999999999999999999999765 356667788 99
Q ss_pred CEEEEEEcCCCCEEEEEeCCCe-EEEEE
Q 001287 605 PVRALQFTSSGAKLAVGFECGR-VAVLD 631 (1107)
Q Consensus 605 ~Vt~la~sp~~~~la~Gs~dg~-V~iwd 631 (1107)
+|++++ |++++|++|+.||+ .+.+.
T Consensus 296 ~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 296 SVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred CceEec--CCCCeEEEEecCCccccccc
Confidence 999999 99999999999998 44444
No 87
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.95 E-value=5.9e-26 Score=255.01 Aligned_cols=282 Identities=16% Similarity=0.210 Sum_probs=210.9
Q ss_pred EEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee---ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceee
Q 001287 79 YKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL---KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQ 155 (1107)
Q Consensus 79 V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~---~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~ 155 (1107)
..+|+||+++ +++++.|++|+|||+.+++++..+ .|...|++++|+|++++|++|+.||+|++|++.. ++...
T Consensus 28 ~~~l~WS~~~--~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~--~~~~~ 103 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ--QKRLR 103 (318)
T ss_dssp CBCEEECTTS--EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTT--TEEEE
T ss_pred ceEEEECCCC--EEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCC--ceeEE
Confidence 5789999985 455566999999999999887766 4667899999999999999999999999999764 45543
Q ss_pred cceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCE--EEEEeCCccccccccccCCCCC
Q 001287 156 LPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ--IIFVGGGKDLQLKDGVVDSPSE 233 (1107)
Q Consensus 156 ~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~--~~~~~g~~~~~~~~~~~~~~~~ 233 (1107)
.+.+|. ..+.++.+ .+..+++++.++.+++|+..... .....+|
T Consensus 104 ---~~~~h~------------~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 149 (318)
T 4ggc_A 104 ---NMTSHS------------ARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGH--------------- 149 (318)
T ss_dssp ---EEECCS------------SCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECC---------------
T ss_pred ---EecCcc------------ceEEEeec----CCCEEEEEecCCceEeeecCCCceeEEEEcCc---------------
Confidence 355665 66777777 35579999999999999987753 3345555
Q ss_pred CCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEE
Q 001287 234 GDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVL 313 (1107)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ 313 (1107)
...+.++.|. +++.+|++++.||.|++||+.+++.... ... ..
T Consensus 150 ---------------~~~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~-------~~~--------------~~ 192 (318)
T 4ggc_A 150 ---------------SQEVCGLRWA-PDGRHLASGGNDNLVNVWPSAPGEGGWV-------PLQ--------------TF 192 (318)
T ss_dssp ---------------SSCEEEEEEC-TTSSEEEEEETTSCEEEEESSCBTTBSC-------CSE--------------EE
T ss_pred ---------------cCceEEEEEc-CCCCEEEEEecCcceeEEECCCCccccc-------cee--------------ee
Confidence 6778888876 9999999999999999999975421110 000 00
Q ss_pred EeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEE
Q 001287 314 HWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFV 393 (1107)
Q Consensus 314 ~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~v 393 (1107)
. .....+..+.+.|.
T Consensus 193 ---------~------------------------------------------~~~~~v~~~~~~~~-------------- 207 (318)
T 4ggc_A 193 ---------T------------------------------------------QHQGAVKAVAWCPW-------------- 207 (318)
T ss_dssp ---------C------------------------------------------CCCSCEEEEEECTT--------------
T ss_pred ---------c------------------------------------------ccCCceEEEEecCC--------------
Confidence 0 00000000011010
Q ss_pred EccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCC
Q 001287 394 LTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGH 473 (1107)
Q Consensus 394 l~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (1107)
T Consensus 208 -------------------------------------------------------------------------------- 207 (318)
T 4ggc_A 208 -------------------------------------------------------------------------------- 207 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEE
Q 001287 474 IKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAV 553 (1107)
Q Consensus 474 ~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Las 553 (1107)
.+..-.+++|+.|++|++||........ ...|...|..+.|++++..+++
T Consensus 208 ------------------~~~~~~~~~~~~~~~i~lwd~~~~~~~~------------~~~~~~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 208 ------------------QSNVLATGGGTSDRHIRIWNVCSGACLS------------AVDAHSQVCSILWSPHYKELIS 257 (318)
T ss_dssp ------------------STTEEEEEECTTTCEEEEEETTTCCEEE------------EEECSSCEEEEEEETTTTEEEE
T ss_pred ------------------CCcEEEEEecCCCCEEEEEecccccccc------------cccceeeeeeeeecccccceEE
Confidence 0001145677889999999998777441 2345568999999999998876
Q ss_pred ec--cCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001287 554 GN--EFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD 631 (1107)
Q Consensus 554 g~--~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd 631 (1107)
++ .||.|+||++.+. +++..+.+|.+.|++|+|+|++++||+|+.||+|+|||
T Consensus 258 ~sg~~d~~i~iwd~~~~-------------------------~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 258 GHGFAQNQLVIWKYPTM-------------------------AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp EECTTTCCEEEEETTTC-------------------------CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred EEEcCCCEEEEEECCCC-------------------------cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 54 7999999998775 36778899999999999999999999999999999999
Q ss_pred cCCC
Q 001287 632 MNLL 635 (1107)
Q Consensus 632 ~~~~ 635 (1107)
+...
T Consensus 313 ~~~~ 316 (318)
T 4ggc_A 313 CFEL 316 (318)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 9754
No 88
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.95 E-value=8.7e-27 Score=262.72 Aligned_cols=273 Identities=18% Similarity=0.219 Sum_probs=190.2
Q ss_pred ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEE
Q 001287 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1107)
Q Consensus 115 ~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll 194 (1107)
.|.+.|++++|++++++|++|+.|++|+||++......+. ..+.+|. ..|.+++|+|..++.+|+
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~---~~l~gH~------------~~V~~v~~~~~~~~~~l~ 75 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILI---ADLRGHE------------GPVWQVAWAHPMYGNILA 75 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEE---EEEECCS------------SCEEEEEECCGGGSSCEE
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEE---EEEcCCC------------ccEEEEEeCCCCCCCEEE
Confidence 6889999999999999999999999999999975322222 3466776 889999997643477799
Q ss_pred EEECCCeEEEEEccCCE---EEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCC--CCEEEEEE
Q 001287 195 IAYENALVILWDVSEAQ---IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS--GSILAVGY 269 (1107)
Q Consensus 195 ~~~~dg~V~vwdl~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spd--g~~l~sg~ 269 (1107)
+++.|++|++||+.++. ...+.+| ...|++++|. |+ |.+|++|+
T Consensus 76 s~s~D~~v~iWd~~~~~~~~~~~~~~h------------------------------~~~V~~v~~~-p~~~g~~lasgs 124 (316)
T 3bg1_A 76 SCSYDRKVIIWREENGTWEKSHEHAGH------------------------------DSSVNSVCWA-PHDYGLILACGS 124 (316)
T ss_dssp EEETTSCEEEECCSSSCCCEEEEECCC------------------------------SSCCCEEEEC-CTTTCSCEEEEC
T ss_pred EEECCCEEEEEECCCCcceEEEEccCC------------------------------CCceEEEEEC-CCCCCcEEEEEc
Confidence 99999999999998863 2334455 7789999986 87 88999999
Q ss_pred cCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcC
Q 001287 270 IDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLE 349 (1107)
Q Consensus 270 ~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~ 349 (1107)
.||+|++||+....... .. .....
T Consensus 125 ~D~~i~lwd~~~~~~~~---------~~--~~~~~--------------------------------------------- 148 (316)
T 3bg1_A 125 SDGAISLLTYTGEGQWE---------VK--KINNA--------------------------------------------- 148 (316)
T ss_dssp SSSCEEEEEECSSSCEE---------EC--CBTTS---------------------------------------------
T ss_pred CCCCEEEEecCCCCCcc---------ee--eeecc---------------------------------------------
Confidence 99999999986431000 00 00000
Q ss_pred ccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcc
Q 001287 350 WSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGV 429 (1107)
Q Consensus 350 ~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (1107)
....+..+.+.|... .+.+. +
T Consensus 149 -----------------h~~~v~~~~~~~~~~---------------~~~~~--~------------------------- 169 (316)
T 3bg1_A 149 -----------------HTIGCNAVSWAPAVV---------------PGSLI--D------------------------- 169 (316)
T ss_dssp -----------------SSSCBCCCEECCCCC---------------C--------------------------------
T ss_pred -----------------ccCCcceEEEccccC---------------Ccccc--c-------------------------
Confidence 000111122222200 00000 0
Q ss_pred cccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEE
Q 001287 430 IPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRI 509 (1107)
Q Consensus 430 ~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIri 509 (1107)
...+ ....++++|++|+.||+|++
T Consensus 170 -----------------------------------------------~~~~---------~~~~~~~~l~sgs~D~~v~l 193 (316)
T 3bg1_A 170 -----------------------------------------------HPSG---------QKPNYIKRFASGGCDNLIKL 193 (316)
T ss_dssp ------------------------------------------------CCS---------CCCCCCCBEECCBTTSBCCE
T ss_pred -----------------------------------------------cccc---------cCccccceEEEecCCCeEEE
Confidence 0000 11223458999999999999
Q ss_pred EeCCCCc-eeEEEeeccceeeeeecCCCCCeEEEEEEeCC----CeEEEeccCceEEEEEecCCCCCccceeeccCcCcc
Q 001287 510 WDATYPV-FKLICALDAEVQGIEVAGSRAPVSTLSFCFIN----SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEV 584 (1107)
Q Consensus 510 Wd~~~~~-l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~----~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~ 584 (1107)
||+.... ...+ ..+.+|...|++++|+|++ .+|++++.||+|+||++.......
T Consensus 194 Wd~~~~~~~~~~---------~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~------------ 252 (316)
T 3bg1_A 194 WKEEEDGQWKEE---------QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNT------------ 252 (316)
T ss_dssp EEECTTSCEEEE---------ECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCC------------
T ss_pred EEeCCCCcccee---------eecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccc------------
Confidence 9987542 1111 2467899999999999987 789999999999999987631100
Q ss_pred eecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 001287 585 HALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNL 634 (1107)
Q Consensus 585 ~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~ 634 (1107)
.....+..|...|++++|+|++++||+|+.||+|+||+...
T Consensus 253 ---------~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 253 ---------WSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp ---------CBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred ---------hhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 01123457899999999999999999999999999999863
No 89
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.95 E-value=6.8e-26 Score=252.95 Aligned_cols=207 Identities=14% Similarity=0.247 Sum_probs=169.6
Q ss_pred eeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC---cceeeeCCCCCCEEEEEEEeC--CCEEEEEeCCCcEEEE
Q 001287 29 AVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDG---IEGLLISPSQLPYKNLEFLQN--QGFLISITNDNEIQVW 103 (1107)
Q Consensus 29 ~~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~---~~~~~~~~h~~~V~~l~fs~d--~~~L~S~s~d~~I~vW 103 (1107)
....||...|.+++|+|++++||+|+.||.|+||+... .....+.+|.++|.+++|+++ +.+|+|++.|++|+||
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 34568999999999999999999999999999999864 234467899999999999863 7899999999999999
Q ss_pred EcCCCe--eeeee-ccCCCeEEEEEecC--CCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCC
Q 001287 104 SLESRS--LACCL-KWESNITAFSVISG--SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQP 178 (1107)
Q Consensus 104 Dl~s~~--~~~~~-~~~~~Vt~l~~~~~--~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 178 (1107)
|+.+++ .+..+ .|...|.+++|+|+ +.+|++|+.||.|++|++....... ...+.+|. ..
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~---~~~~~~h~------------~~ 147 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS---PIIIDAHA------------IG 147 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC---CEEEECCS------------SC
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee---eeeeeccc------------Cc
Confidence 999874 33333 57889999999997 7899999999999999987532111 12345555 78
Q ss_pred eEEEEcccCC-----------CCCEEEEEECCCeEEEEEccCCE----E-EEEeCCccccccccccCCCCCCCCccccCC
Q 001287 179 VVGVLPHPNS-----------SGNRVLIAYENALVILWDVSEAQ----I-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGI 242 (1107)
Q Consensus 179 V~~v~f~P~~-----------~~~~ll~~~~dg~V~vwdl~~~~----~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (1107)
|.+++|+|.. ++.+|++|+.|+.|++||+.++. . ..+.+|
T Consensus 148 v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H------------------------ 203 (297)
T 2pm7_B 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH------------------------ 203 (297)
T ss_dssp EEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC------------------------
T ss_pred cceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC------------------------
Confidence 9999999852 25689999999999999998754 2 234455
Q ss_pred CCCCCCCCceeEEEeecCCC---CEEEEEEcCCcEEEEeCCC
Q 001287 243 SEHQPEEKEISALCWASSSG---SILAVGYIDGDILLWNTST 281 (1107)
Q Consensus 243 ~~~~~~~~~Vtsl~w~spdg---~~l~sg~~dG~I~lWd~~~ 281 (1107)
...|.+++|. |++ .+|++|+.||+|++||+.+
T Consensus 204 ------~~~V~~v~~s-p~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 204 ------SDWVRDVAWS-PTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp ------SSCEEEEEEC-CCCSSSEEEEEEETTSCEEEEEESS
T ss_pred ------CCceEEEEEC-CCCCCceEEEEEECCCcEEEEEeCC
Confidence 7789999986 884 8999999999999999864
No 90
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.95 E-value=5e-26 Score=268.75 Aligned_cols=114 Identities=11% Similarity=0.205 Sum_probs=98.7
Q ss_pred eeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcc-eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCC
Q 001287 29 AVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1107)
Q Consensus 29 ~~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s 107 (1107)
..+.++...|.|++| ++++||+|+.||.|++|+....+ .....+|.++|.+++| ++.+|++++.|++|++||+.+
T Consensus 127 ~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 127 HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp ECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred ecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence 344567778888887 68999999999999999996554 4467789999999999 778999999999999999999
Q ss_pred Ceeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeec
Q 001287 108 RSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDA 148 (1107)
Q Consensus 108 ~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~ 148 (1107)
++.+..+ .|...|++++++ ++++++|+.||.|++|++..
T Consensus 203 ~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~ 242 (435)
T 1p22_A 203 GEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMAS 242 (435)
T ss_dssp CCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSS
T ss_pred CcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCC
Confidence 9888777 578899999996 46999999999999999864
No 91
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.95 E-value=2.5e-26 Score=271.66 Aligned_cols=211 Identities=16% Similarity=0.262 Sum_probs=161.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcc------------eeeeCCCC------------CCEEEEEEEeCC--
Q 001287 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIE------------GLLISPSQ------------LPYKNLEFLQNQ-- 88 (1107)
Q Consensus 35 ~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~------------~~~~~~h~------------~~V~~l~fs~d~-- 88 (1107)
...|++++|+|++++||+|+.||.|+||+..... .....+|. .+|.+++|+|++
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~ 107 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence 5789999999999999999999999999987554 44566788 899999999998
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeee-----------------------------------------eeccCCCeEEEEEec
Q 001287 89 GFLISITNDNEIQVWSLESRSLAC-----------------------------------------CLKWESNITAFSVIS 127 (1107)
Q Consensus 89 ~~L~S~s~d~~I~vWDl~s~~~~~-----------------------------------------~~~~~~~Vt~l~~~~ 127 (1107)
.+|++++.|+.|++||+.++.... ...|...|++++|+|
T Consensus 108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 187 (447)
T 3dw8_B 108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS 187 (447)
T ss_dssp SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT
T ss_pred ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC
Confidence 799999999999999998754321 125788999999999
Q ss_pred CCCEEEEEcCCCcEEEEEeecCCCceeec----ceeecccccccccCCCCCCCCCeEEEEcccCCCC-CEEEEEECCCeE
Q 001287 128 GSHFMYIGDENGLMSVIKYDADEGKLFQL----PYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG-NRVLIAYENALV 202 (1107)
Q Consensus 128 ~~~~l~~g~~dg~V~vw~~d~~~~~l~~~----~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~-~~ll~~~~dg~V 202 (1107)
++++|++| .||.|++|++... +..... +..+..|. ..|.+++|+| ++ .+|++++.||.|
T Consensus 188 ~~~~l~s~-~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~------------~~v~~~~~~p--~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 188 DYETYLSA-DDLRINLWHLEIT-DRSFNIVDIKPANMEELT------------EVITAAEFHP--NSCNTFVYSSSKGTI 251 (447)
T ss_dssp TSSEEEEE-CSSEEEEEETTEE-EEEEEEEECCCSSGGGCC------------CCEEEEEECS--SCTTEEEEEETTSCE
T ss_pred CCCEEEEe-CCCeEEEEECCCC-CceeeeeecccccccccC------------cceEEEEECC--CCCcEEEEEeCCCeE
Confidence 99999999 7999999998732 111110 00123333 7899999999 45 789999999999
Q ss_pred EEEEccCCEE-----EEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEE
Q 001287 203 ILWDVSEAQI-----IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLW 277 (1107)
Q Consensus 203 ~vwdl~~~~~-----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lW 277 (1107)
++||+.+++. ..+.+|...... ... ..+...|++++|. |+|++|++++. |.|++|
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~-----------~~~-------~~~~~~v~~~~~s-~~g~~l~~~~~-~~v~iw 311 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNR-----------SFF-------SEIISSISDVKFS-HSGRYMMTRDY-LSVKVW 311 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----C-----------CHH-------HHHTTCEEEEEEC-TTSSEEEEEES-SEEEEE
T ss_pred EEEECcCCccccceeeEeccCCCcccc-----------ccc-------cccCceEEEEEEC-CCCCEEEEeeC-CeEEEE
Confidence 9999998764 333333110000 000 0012489999986 99999999999 999999
Q ss_pred eCCC
Q 001287 278 NTST 281 (1107)
Q Consensus 278 d~~~ 281 (1107)
|+..
T Consensus 312 d~~~ 315 (447)
T 3dw8_B 312 DLNM 315 (447)
T ss_dssp ETTC
T ss_pred eCCC
Confidence 9975
No 92
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.95 E-value=1.1e-25 Score=259.10 Aligned_cols=156 Identities=10% Similarity=0.023 Sum_probs=124.0
Q ss_pred ccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCc----eEEEEEe
Q 001287 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFG----LVYIYNL 565 (1107)
Q Consensus 490 ~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg----~V~vw~~ 565 (1107)
+++|+++++++++.|+ +++|+...+..... ....+|...|++++|+|++++|++++.|+ .+++|++
T Consensus 183 ~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~---------~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~ 252 (365)
T 4h5i_A 183 HFSTDGKVVAYITGSS-LEVISTVTGSCIAR---------KTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISI 252 (365)
T ss_dssp EECTTSSEEEEECSSC-EEEEETTTCCEEEE---------ECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEE
T ss_pred EEccCCceEEecccee-EEEEEeccCcceee---------eecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccc
Confidence 6788888999998655 55555554442211 22457888999999999999999999887 5677776
Q ss_pred cCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCC
Q 001287 566 NGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDIS 645 (1107)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~ 645 (1107)
...... ......+..|...|++++|||||++||+|+.||+|+|||+.+++++.. .+.
T Consensus 253 ~~~~~~---------------------~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~--~~~ 309 (365)
T 4h5i_A 253 KSGNTS---------------------VLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKI--FKQ 309 (365)
T ss_dssp ETTEEE---------------------EEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEE--ETT
T ss_pred ccceec---------------------ceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEE--ecC
Confidence 554110 112345678999999999999999999999999999999999988732 357
Q ss_pred CCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCC
Q 001287 646 GSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1107)
Q Consensus 646 ~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~ 700 (1107)
+|..+|++|+|+ |++.+|++|+.|++|+|||..
T Consensus 310 gH~~~V~~v~fS----------------------pdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 310 AHSFAITEVTIS----------------------PDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp SSSSCEEEEEEC----------------------TTSCEEEEEETTSEEEEEECC
T ss_pred cccCCEEEEEEC----------------------CCCCEEEEEeCCCeEEEEEcC
Confidence 899999999999 678999999999999999974
No 93
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.95 E-value=4.6e-26 Score=265.99 Aligned_cols=198 Identities=16% Similarity=0.262 Sum_probs=158.5
Q ss_pred cCCCCCeEE--EEEcCCCCEEEEEECCCcEEEEeCCCccee--eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCC
Q 001287 32 YGIPATASI--LAFDHIQRLLAIATLDGRIKVIGGDGIEGL--LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1107)
Q Consensus 32 ~G~~~~i~~--lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~--~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s 107 (1107)
.|+...+.+ ++|++ ..+++++.||.|+||+....+.. ....|..+|.+++|+|++.+|++++.|+.|++||+.+
T Consensus 88 ~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 165 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES 165 (401)
T ss_dssp TTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC
Confidence 366655444 55554 55778889999999999665543 4455899999999999999999999999999999999
Q ss_pred Ceeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEccc
Q 001287 108 RSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1107)
Q Consensus 108 ~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P 186 (1107)
++.+..+ .|...|++++|+ ++++++|+.||.|++|++.... ... ..+..|. ..|.++.|+|
T Consensus 166 ~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~-~~~---~~~~~~~------------~~v~~~~~~~ 227 (401)
T 4aez_A 166 QTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIAN-HQI---GTLQGHS------------SEVCGLAWRS 227 (401)
T ss_dssp CCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS-CEE---EEEECCS------------SCEEEEEECT
T ss_pred CeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCc-cee---eEEcCCC------------CCeeEEEEcC
Confidence 9888777 688999999994 5799999999999999987432 222 2245555 7899999998
Q ss_pred CCCCCEEEEEECCCeEEEEEccCCEEEEE-eCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCC-E
Q 001287 187 NSSGNRVLIAYENALVILWDVSEAQIIFV-GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-I 264 (1107)
Q Consensus 187 ~~~~~~ll~~~~dg~V~vwdl~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~-~ 264 (1107)
++.+|++++.||.|++||+.+++.... .+| ...|++++|. |++. .
T Consensus 228 --~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~------------------------------~~~v~~~~~~-p~~~~l 274 (401)
T 4aez_A 228 --DGLQLASGGNDNVVQIWDARSSIPKFTKTNH------------------------------NAAVKAVAWC-PWQSNL 274 (401)
T ss_dssp --TSSEEEEEETTSCEEEEETTCSSEEEEECCC------------------------------SSCCCEEEEC-TTSTTE
T ss_pred --CCCEEEEEeCCCeEEEccCCCCCccEEecCC------------------------------cceEEEEEEC-CCCCCE
Confidence 688899999999999999998776543 344 6789999986 8664 5
Q ss_pred EEEEE--cCCcEEEEeCCCC
Q 001287 265 LAVGY--IDGDILLWNTSTT 282 (1107)
Q Consensus 265 l~sg~--~dG~I~lWd~~~~ 282 (1107)
+++|+ .||.|++||+.++
T Consensus 275 l~~~~gs~d~~i~i~d~~~~ 294 (401)
T 4aez_A 275 LATGGGTMDKQIHFWNAATG 294 (401)
T ss_dssp EEEECCTTTCEEEEEETTTC
T ss_pred EEEecCCCCCEEEEEECCCC
Confidence 56654 7999999999754
No 94
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.95 E-value=3.1e-26 Score=260.39 Aligned_cols=200 Identities=16% Similarity=0.082 Sum_probs=166.2
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcc----eeeeCCCCCCEEEEEEEeCCC-EEEEEeCCCcEEEEEc
Q 001287 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE----GLLISPSQLPYKNLEFLQNQG-FLISITNDNEIQVWSL 105 (1107)
Q Consensus 31 ~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~----~~~~~~h~~~V~~l~fs~d~~-~L~S~s~d~~I~vWDl 105 (1107)
..+|...|++++|+|++++||+|+.||.|+||+..... ......|..+|.+++|+|++. +|++++.|+.|++||+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 34788999999999999999999999999999996655 556668999999999999999 9999999999999999
Q ss_pred -CCCeeeeeec--cCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCC-------CceeecceeecccccccccCCCCCC
Q 001287 106 -ESRSLACCLK--WESNITAFSVISGSHFMYIGDENGLMSVIKYDADE-------GKLFQLPYNISADALSEKAGFPLLS 175 (1107)
Q Consensus 106 -~s~~~~~~~~--~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~-------~~l~~~~~~i~~~~~~~~~~~~~~~ 175 (1107)
.+++...... |...|++++|++ ++++++++.||.|++|++.... ++... .+. +
T Consensus 87 ~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~---~~~-~------------ 149 (342)
T 1yfq_A 87 IGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN---NTK-V------------ 149 (342)
T ss_dssp SSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS---SSS-S------------
T ss_pred ccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeee---EEe-e------------
Confidence 8887766557 899999999999 9999999999999999976411 11111 111 2
Q ss_pred CCCeEEEEcccCCCCCEEEEEECCCeEEEEEccC-CEE--E-EEeCCccccccccccCCCCCCCCccccCCCCCCCCCCc
Q 001287 176 HQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE-AQI--I-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 251 (1107)
Q Consensus 176 ~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~-~~~--~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1107)
...|.+++|+|. + +++++.+|.|++||+.+ ... . ....| ...
T Consensus 150 ~~~v~~~~~~~~--~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~------------------------------~~~ 195 (342)
T 1yfq_A 150 KNKIFTMDTNSS--R--LIVGMNNSQVQWFRLPLCEDDNGTIEESGL------------------------------KYQ 195 (342)
T ss_dssp CCCEEEEEECSS--E--EEEEESTTEEEEEESSCCTTCCCEEEECSC------------------------------SSC
T ss_pred CCceEEEEecCC--c--EEEEeCCCeEEEEECCccccccceeeecCC------------------------------CCc
Confidence 278999999873 3 99999999999999987 432 1 22222 668
Q ss_pred eeEEEeecC-CCCEEEEEEcCCcEEEEeCCCC
Q 001287 252 ISALCWASS-SGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 252 Vtsl~w~sp-dg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
|++++|. | ++.+|++++.||.|++|++...
T Consensus 196 i~~i~~~-~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 196 IRDVALL-PKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp EEEEEEC-SGGGCEEEEEETTSEEEEEECCTT
T ss_pred eeEEEEC-CCCCCEEEEEecCCcEEEEEEcCC
Confidence 9999986 9 9999999999999999998643
No 95
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.95 E-value=6.4e-26 Score=257.16 Aligned_cols=218 Identities=14% Similarity=0.195 Sum_probs=171.0
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCc-----ceeeeCCCCCCEEEEEEEe--CCCEEEEEeCCCcEEE
Q 001287 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-----EGLLISPSQLPYKNLEFLQ--NQGFLISITNDNEIQV 102 (1107)
Q Consensus 30 ~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~-----~~~~~~~h~~~V~~l~fs~--d~~~L~S~s~d~~I~v 102 (1107)
...||.+.|++++|+|++++||+|+.||.|+||+.... ......+|..+|.+++|+| |+.+|++++.|+.|++
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 44689999999999999999999999999999998653 2334568999999999999 6899999999999999
Q ss_pred EEcCCC---------eeeeee-ccCCCeEEEEEecC--CCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccC
Q 001287 103 WSLESR---------SLACCL-KWESNITAFSVISG--SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAG 170 (1107)
Q Consensus 103 WDl~s~---------~~~~~~-~~~~~Vt~l~~~~~--~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~ 170 (1107)
||+.++ +.+..+ .|...|++++|+|+ ++++++|+.||.|++|++.... .... +.+.... .....
T Consensus 86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~-~~~~~~~-~~~~~ 161 (351)
T 3f3f_A 86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS--DLRS-WTLTSEM-KVLSI 161 (351)
T ss_dssp EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTT--CTTC-CEEEEEE-ESCSC
T ss_pred EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChH--Hhcc-ccccccc-ccccc
Confidence 999887 334444 67899999999999 9999999999999999987532 2111 1111100 00111
Q ss_pred CCCCCCCCeEEEEcccC-CCCCEEEEEECCCeEEEEEccCCEEEE---EeCCccccccccccCCCCCCCCccccCCCCCC
Q 001287 171 FPLLSHQPVVGVLPHPN-SSGNRVLIAYENALVILWDVSEAQIIF---VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQ 246 (1107)
Q Consensus 171 ~~~~~~~~V~~v~f~P~-~~~~~ll~~~~dg~V~vwdl~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1107)
.+..+...+.++.|+|. ..+.++++++.++.+.+|+...++... +.+|
T Consensus 162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h---------------------------- 213 (351)
T 3f3f_A 162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGH---------------------------- 213 (351)
T ss_dssp CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCC----------------------------
T ss_pred ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCC----------------------------
Confidence 12334578999999984 237789999999999888888776532 2233
Q ss_pred CCCCceeEEEeecCCC----CEEEEEEcCCcEEEEeCCCC
Q 001287 247 PEEKEISALCWASSSG----SILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 247 ~~~~~Vtsl~w~spdg----~~l~sg~~dG~I~lWd~~~~ 282 (1107)
...|++++|. |++ .+|++|+.||.|++||+...
T Consensus 214 --~~~i~~~~~~-p~~~~~~~~l~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 214 --KSLIRSISWA-PSIGRWYQLIATGCKDGRIRIFKITEK 250 (351)
T ss_dssp --CSCEEEEEEC-CCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred --CcceeEEEEC-CCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence 7789999986 998 89999999999999999643
No 96
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.95 E-value=1.1e-25 Score=252.89 Aligned_cols=197 Identities=17% Similarity=0.296 Sum_probs=149.6
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCccee---eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee
Q 001287 38 ASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL---LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1107)
Q Consensus 38 i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~---~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~ 114 (1107)
.++|+||+++ +||+|. |+.|+|||....+.+ ...+|...|++++|+|++.+|++++.|++|++||+++++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 4789999986 899986 899999999765543 34568889999999999999999999999999999999988776
Q ss_pred -ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEE
Q 001287 115 -KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1107)
Q Consensus 115 -~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~l 193 (1107)
.|...+.++++ .+..+++|+.++.+++|+.......+ ..+.+|. ..+..+.++| ++.+|
T Consensus 106 ~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~----~~~~~~~------------~~~~~~~~~~--~~~~l 165 (318)
T 4ggc_A 106 TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHV----ATLSGHS------------QEVCGLRWAP--DGRHL 165 (318)
T ss_dssp ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEE----EEEECCS------------SCEEEEEECT--TSSEE
T ss_pred cCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeE----EEEcCcc------------CceEEEEEcC--CCCEE
Confidence 56677776554 56899999999999998876532222 2244554 7799999977 68889
Q ss_pred EEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCC-EE--EEEEc
Q 001287 194 LIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-IL--AVGYI 270 (1107)
Q Consensus 194 l~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~-~l--~sg~~ 270 (1107)
++++.||.|++||+.+++....... ........|.+++|. +++. .+ ++++.
T Consensus 166 ~s~~~d~~i~iwd~~~~~~~~~~~~-------------------------~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~ 219 (318)
T 4ggc_A 166 ASGGNDNLVNVWPSAPGEGGWVPLQ-------------------------TFTQHQGAVKAVAWC-PWQSNVLATGGGTS 219 (318)
T ss_dssp EEEETTSCEEEEESSCBTTBSCCSE-------------------------EECCCCSCEEEEEEC-TTSTTEEEEEECTT
T ss_pred EEEecCcceeEEECCCCccccccee-------------------------eecccCCceEEEEec-CCCCcEEEEEecCC
Confidence 9999999999999987642111000 000116678899986 6554 33 45677
Q ss_pred CCcEEEEeCCCC
Q 001287 271 DGDILLWNTSTT 282 (1107)
Q Consensus 271 dG~I~lWd~~~~ 282 (1107)
++.|++||....
T Consensus 220 ~~~i~lwd~~~~ 231 (318)
T 4ggc_A 220 DRHIRIWNVCSG 231 (318)
T ss_dssp TCEEEEEETTTC
T ss_pred CCEEEEEecccc
Confidence 899999998643
No 97
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=5.2e-26 Score=260.68 Aligned_cols=164 Identities=10% Similarity=0.115 Sum_probs=132.1
Q ss_pred cceeeeCCCCCCEEEEEEEeC---CCEEEEEeCCCcEEEEEcCC-Ceee-eee-ccCCCeEEEEEecCCCEEEEEcCCCc
Q 001287 67 IEGLLISPSQLPYKNLEFLQN---QGFLISITNDNEIQVWSLES-RSLA-CCL-KWESNITAFSVISGSHFMYIGDENGL 140 (1107)
Q Consensus 67 ~~~~~~~~h~~~V~~l~fs~d---~~~L~S~s~d~~I~vWDl~s-~~~~-~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~ 140 (1107)
.......+|..+|++++|+|+ +.+|++++.|+.|+|||+.+ +..+ ..+ .|...|++++|+|++++|++|+.||.
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 109 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT 109 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence 344567789999999999999 58999999999999999997 5443 333 68899999999999999999999999
Q ss_pred EEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCcc
Q 001287 141 MSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKD 220 (1107)
Q Consensus 141 V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~ 220 (1107)
|++|+++. +.... +..|. ..|.+++|+|..++.+|++++.||.|++||+.+++.+.....
T Consensus 110 v~iwd~~~--~~~~~----~~~~~------------~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-- 169 (368)
T 3mmy_A 110 AKMWDLSS--NQAIQ----IAQHD------------APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL-- 169 (368)
T ss_dssp EEEEETTT--TEEEE----EEECS------------SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEEC--
T ss_pred EEEEEcCC--CCcee----ecccc------------CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEec--
Confidence 99999874 34332 33444 789999995544788899999999999999998866544322
Q ss_pred ccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCC
Q 001287 221 LQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1107)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~ 281 (1107)
...+.++.+. +..+++++.++.+.+|++..
T Consensus 170 ----------------------------~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~ 199 (368)
T 3mmy_A 170 ----------------------------PERCYCADVI---YPMAVVATAERGLIVYQLEN 199 (368)
T ss_dssp ----------------------------SSCEEEEEEE---TTEEEEEEGGGCEEEEECSS
T ss_pred ----------------------------CCCceEEEec---CCeeEEEeCCCcEEEEEecc
Confidence 3356666654 45889999999999999964
No 98
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.95 E-value=1.5e-25 Score=254.03 Aligned_cols=181 Identities=14% Similarity=0.109 Sum_probs=133.8
Q ss_pred eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCC----eeeeee-ccCCCeEEEEEec--CCCEEEEEcCCCcEEE
Q 001287 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR----SLACCL-KWESNITAFSVIS--GSHFMYIGDENGLMSV 143 (1107)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~----~~~~~~-~~~~~Vt~l~~~~--~~~~l~~g~~dg~V~v 143 (1107)
++.+|..+|++++|+|++.+|++++.|+.|++||+.++ ++...+ .|...|++++|+| ++++|++|+.||.|++
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 55789999999999999999999999999999999976 344444 6889999999999 5899999999999999
Q ss_pred EEeecCCCcee----ecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCc
Q 001287 144 IKYDADEGKLF----QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGK 219 (1107)
Q Consensus 144 w~~d~~~~~l~----~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~ 219 (1107)
|+++....... .....+..|. ..|.+++|+|...+.+|++++.||.|++||+.+++........
T Consensus 86 wd~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 153 (351)
T 3f3f_A 86 WEEDPDQEECSGRRWNKLCTLNDSK------------GSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLT 153 (351)
T ss_dssp EEECTTSCTTSSCSEEEEEEECCCS------------SCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEE
T ss_pred EecCCCcccccccCcceeeeecccC------------CceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccc
Confidence 99986422110 1112344444 7899999998433888999999999999999876532111000
Q ss_pred cccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCC---CCEEEEEEcCCcEEEEeCC
Q 001287 220 DLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS---GSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spd---g~~l~sg~~dG~I~lWd~~ 280 (1107)
..... .. .....+...+.+++|. |+ +..|++++.+|.+.+|+..
T Consensus 154 ~~~~~--~~--------------~~~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~~~~ 200 (351)
T 3f3f_A 154 SEMKV--LS--------------IPPANHLQSDFCLSWC-PSRFSPEKLAVSALEQAIIYQRGK 200 (351)
T ss_dssp EEEES--CS--------------CCCSSCSCCCEEEEEC-CCSSSCCEEEEEETTEEEEEEECT
T ss_pred ccccc--cc--------------cccCCcccceeEEEec-cCCCCCcEEEEecCCCcEEEEccC
Confidence 00000 00 0001126689999986 86 8999999999999777764
No 99
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.95 E-value=6.2e-26 Score=268.31 Aligned_cols=182 Identities=12% Similarity=0.145 Sum_probs=130.1
Q ss_pred CCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCe-----------eeeee-ccC------------CCeEEEEEecC
Q 001287 73 SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS-----------LACCL-KWE------------SNITAFSVISG 128 (1107)
Q Consensus 73 ~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~-----------~~~~~-~~~------------~~Vt~l~~~~~ 128 (1107)
..|.++|++++|+|++.+|++++.|+.|+|||+.+++ +...+ .|. ..|++++|+|+
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 4578899999999999999999999999999999876 34444 566 78999999999
Q ss_pred C--CEEEEEcCCCcEEEEEeecCCCceeecceeeccccc-------------------------ccccCCCCCCCCCeEE
Q 001287 129 S--HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADAL-------------------------SEKAGFPLLSHQPVVG 181 (1107)
Q Consensus 129 ~--~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~-------------------------~~~~~~~~~~~~~V~~ 181 (1107)
+ .++++|+.||.|++|++.... .....+.+..+.- .........+...|.+
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 182 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERD--KRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS 182 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEE--EEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred CCcceEEEeCCCCeEEEEeccccc--CCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence 8 799999999999999987521 1100011110000 0000011234588999
Q ss_pred EEcccCCCCCEEEEEECCCeEEEEEccC-CEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecC
Q 001287 182 VLPHPNSSGNRVLIAYENALVILWDVSE-AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1107)
Q Consensus 182 v~f~P~~~~~~ll~~~~dg~V~vwdl~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp 260 (1107)
++|+| ++++|+++ .||.|++||+.. ++.......+...+ ..+...|++++|. |
T Consensus 183 ~~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~----------------------~~~~~~v~~~~~~-p 236 (447)
T 3dw8_B 183 ISINS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANM----------------------EELTEVITAAEFH-P 236 (447)
T ss_dssp EEECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSG----------------------GGCCCCEEEEEEC-S
T ss_pred EEEcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccc----------------------cccCcceEEEEEC-C
Confidence 99998 68888888 899999999984 44443221100000 0116789999986 9
Q ss_pred CC-CEEEEEEcCCcEEEEeCCCC
Q 001287 261 SG-SILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 261 dg-~~l~sg~~dG~I~lWd~~~~ 282 (1107)
++ .+|++|+.||.|++||+.++
T Consensus 237 ~~~~~l~s~~~dg~i~iwd~~~~ 259 (447)
T 3dw8_B 237 NSCNTFVYSSSKGTIRLCDMRAS 259 (447)
T ss_dssp SCTTEEEEEETTSCEEEEETTTC
T ss_pred CCCcEEEEEeCCCeEEEEECcCC
Confidence 98 99999999999999999765
No 100
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=3.5e-25 Score=253.72 Aligned_cols=299 Identities=14% Similarity=0.136 Sum_probs=224.8
Q ss_pred EEcCCCeeeeee-ccCCCeEEEEEecC---CCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCC
Q 001287 103 WSLESRSLACCL-KWESNITAFSVISG---SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQP 178 (1107)
Q Consensus 103 WDl~s~~~~~~~-~~~~~Vt~l~~~~~---~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 178 (1107)
|+....+.+..+ .|.+.|++++|+|+ +++|++|+.||.|++|+++.....+. ..+..|. ..
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~---~~~~~h~------------~~ 88 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP---KAQQMHT------------GP 88 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE---EEEEECS------------SC
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE---EEecccc------------CC
Confidence 344444555554 68899999999999 59999999999999999986333332 2255555 78
Q ss_pred eEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEee
Q 001287 179 VVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA 258 (1107)
Q Consensus 179 V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~ 258 (1107)
|.+++|+| ++.+|++++.||.|++||+.+++.....+| ...|++++|.
T Consensus 89 v~~~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~------------------------------~~~v~~~~~~ 136 (368)
T 3mmy_A 89 VLDVCWSD--DGSKVFTASCDKTAKMWDLSSNQAIQIAQH------------------------------DAPVKTIHWI 136 (368)
T ss_dssp EEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEEC------------------------------SSCEEEEEEE
T ss_pred EEEEEECc--CCCEEEEEcCCCcEEEEEcCCCCceeeccc------------------------------cCceEEEEEE
Confidence 99999998 788899999999999999999998887777 7889999982
Q ss_pred -cCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCC
Q 001287 259 -SSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEI 337 (1107)
Q Consensus 259 -spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~ 337 (1107)
++++.+|++++.||.|++||+.+++.. ..+...
T Consensus 137 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~-----------~~~~~~----------------------------------- 170 (368)
T 3mmy_A 137 KAPNYSCVMTGSWDKTLKFWDTRSSNPM-----------MVLQLP----------------------------------- 170 (368)
T ss_dssp ECSSCEEEEEEETTSEEEEECSSCSSCS-----------EEEECS-----------------------------------
T ss_pred eCCCCCEEEEccCCCcEEEEECCCCcEE-----------EEEecC-----------------------------------
Confidence 489999999999999999999754210 000000
Q ss_pred CCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCC
Q 001287 338 GSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEK 417 (1107)
Q Consensus 338 ~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~ 417 (1107)
.....
T Consensus 171 ------------------------------------------------------------~~~~~--------------- 175 (368)
T 3mmy_A 171 ------------------------------------------------------------ERCYC--------------- 175 (368)
T ss_dssp ------------------------------------------------------------SCEEE---------------
T ss_pred ------------------------------------------------------------CCceE---------------
Confidence 00000
Q ss_pred CCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcE
Q 001287 418 KPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRV 497 (1107)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~ 497 (1107)
.......
T Consensus 176 -------------------------------------------------------------------------~~~~~~~ 182 (368)
T 3mmy_A 176 -------------------------------------------------------------------------ADVIYPM 182 (368)
T ss_dssp -------------------------------------------------------------------------EEEETTE
T ss_pred -------------------------------------------------------------------------EEecCCe
Confidence 0001126
Q ss_pred EEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCe----EEEeccCceEEEEEecCCCCCcc
Q 001287 498 YLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSS----LAVGNEFGLVYIYNLNGSLDAKN 573 (1107)
Q Consensus 498 laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~----Lasg~~dg~V~vw~~~~~~~~~~ 573 (1107)
+++++.|+.+++||+........ .....+...+.++++.++... +++++.||.|++|++......
T Consensus 183 ~~~~~~~~~i~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~-- 251 (368)
T 3mmy_A 183 AVVATAERGLIVYQLENQPSEFR---------RIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA-- 251 (368)
T ss_dssp EEEEEGGGCEEEEECSSSCEEEE---------ECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH--
T ss_pred eEEEeCCCcEEEEEeccccchhh---------hccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc--
Confidence 77788899999999987653311 112234456788888887766 999999999999999875210
Q ss_pred ceeeccCcCcceecccCCcceeEEEEeecCc------------CEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEe
Q 001287 574 FLFVLETKSEVHALPEGKISLCRAVFSLVNS------------PVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFT 641 (1107)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~------------~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~ 641 (1107)
..+..+..|.. +|++++|+|++++|++|+.||.|+|||+.++..+
T Consensus 252 --------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~--- 308 (368)
T 3mmy_A 252 --------------------KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKL--- 308 (368)
T ss_dssp --------------------HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE---
T ss_pred --------------------ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEE---
Confidence 12233444443 8999999999999999999999999999999887
Q ss_pred ecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEe
Q 001287 642 DDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 698 (1107)
Q Consensus 642 ~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d 698 (1107)
..+.+|..+|.+++|+ |++.+|++++.|+....|+
T Consensus 309 ~~~~~~~~~v~~~~~s----------------------~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 309 KTSEQLDQPISACCFN----------------------HNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp EECCCCSSCEEEEEEC----------------------TTSSCEEEEECCCSTTCGG
T ss_pred EEecCCCCCceEEEEC----------------------CCCCeEEEEeccccccccc
Confidence 4567899999999999 6688899999998655444
No 101
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.94 E-value=3.2e-25 Score=261.84 Aligned_cols=115 Identities=12% Similarity=0.279 Sum_probs=95.9
Q ss_pred eCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCC
Q 001287 72 ISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADE 150 (1107)
Q Consensus 72 ~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~ 150 (1107)
..+|..+|.+++| ++.+|++++.|+.|++||+.+++....+ .|.+.|+++++ ++++|++|+.||.|++|++..
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~-- 202 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT-- 202 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS--
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC--
Confidence 3457778999887 7889999999999999999999888777 58899999998 788999999999999999875
Q ss_pred CceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCE
Q 001287 151 GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ 211 (1107)
Q Consensus 151 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~ 211 (1107)
++... .+..|. ..|.++.|++ ..+++++.||.|++||+.++.
T Consensus 203 ~~~~~---~~~~h~------------~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~ 244 (435)
T 1p22_A 203 GEMLN---TLIHHC------------EAVLHLRFNN----GMMVTCSKDRSIAVWDMASPT 244 (435)
T ss_dssp CCEEE---EECCCC------------SCEEEEECCT----TEEEEEETTSCEEEEECSSSS
T ss_pred CcEEE---EEcCCC------------CcEEEEEEcC----CEEEEeeCCCcEEEEeCCCCC
Confidence 44442 355555 7899999954 479999999999999987643
No 102
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.94 E-value=7.4e-25 Score=257.47 Aligned_cols=285 Identities=17% Similarity=0.271 Sum_probs=214.7
Q ss_pred CeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEEC
Q 001287 119 NITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE 198 (1107)
Q Consensus 119 ~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~ 198 (1107)
.++.++|+++ +.|++|. |++|+||+... +++.+. +.+.+|. ..|++|+|+| ++.+|++|+.
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~t--g~~~~~-~~~~~~~------------~~V~sv~fsp--dg~~lasgs~ 167 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASS--GDILQL-LQMEQPG------------EYISSVAWIK--EGNYLAVGTS 167 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTT--CCEEEE-EECCSTT------------CCEEEEEECT--TSSEEEEEET
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCC--CCEEEE-EEecCCC------------CcEEEEEECC--CCCEEEEEEC
Confidence 4677899864 6888886 89999999764 555543 4445554 7899999988 7889999999
Q ss_pred CCeEEEEEccCCEEEE-EeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEE
Q 001287 199 NALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLW 277 (1107)
Q Consensus 199 dg~V~vwdl~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lW 277 (1107)
||.|+|||+.+++.+. ..+| ...|.++.|. +..|++|+.|+.+++|
T Consensus 168 Dg~v~iWd~~~~~~~~~~~~h------------------------------~~~v~~~s~~---~~~l~sgs~d~~i~~~ 214 (420)
T 4gga_A 168 SAEVQLWDVQQQKRLRNMTSH------------------------------SARVGSLSWN---SYILSSGSRSGHIHHH 214 (420)
T ss_dssp TSCEEEEETTTTEEEEEECCC------------------------------SSCEEEEEEE---TTEEEEEETTSEEEEE
T ss_pred CCeEEEEEcCCCcEEEEEeCC------------------------------CCceEEEeeC---CCEEEEEeCCCceeEe
Confidence 9999999999988755 4445 6678888864 7899999999999999
Q ss_pred eCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCcccccccc
Q 001287 278 NTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENL 357 (1107)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~ 357 (1107)
|....... +..+ .+.
T Consensus 215 d~~~~~~~------------------------~~~~-------------------~~h---------------------- 229 (420)
T 4gga_A 215 DVRVAEHH------------------------VATL-------------------SGH---------------------- 229 (420)
T ss_dssp ETTSSSCE------------------------EEEE-------------------ECC----------------------
T ss_pred eeccccee------------------------eEEe-------------------ccc----------------------
Confidence 98643100 0000 000
Q ss_pred ceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCce
Q 001287 358 RCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIM 437 (1107)
Q Consensus 358 ~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 437 (1107)
T Consensus 230 -------------------------------------------------------------------------------- 229 (420)
T 4gga_A 230 -------------------------------------------------------------------------------- 229 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCce
Q 001287 438 TVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVF 517 (1107)
Q Consensus 438 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l 517 (1107)
...+..+.++++++++++++.||.|++||...+..
T Consensus 230 ---------------------------------------------~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~ 264 (420)
T 4gga_A 230 ---------------------------------------------SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 264 (420)
T ss_dssp ---------------------------------------------SSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSS
T ss_pred ---------------------------------------------ccceeeeeecCCCCeeeeeeccccceEEeeccccc
Confidence 00001113556777999999999999999987653
Q ss_pred eEEEeeccceeeeeecCCCCCeEEEEEEeCCCe-EEE--eccCceEEEEEecCCCCCccceeeccCcCcceecccCCcce
Q 001287 518 KLICALDAEVQGIEVAGSRAPVSTLSFCFINSS-LAV--GNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISL 594 (1107)
Q Consensus 518 ~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~-Las--g~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 594 (1107)
... .......|...|.+++|+|++.. |++ |+.|+.|++|++.+. .
T Consensus 265 ~~~-------~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-------------------------~ 312 (420)
T 4gga_A 265 GWV-------PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-------------------------A 312 (420)
T ss_dssp CSC-------CSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT-------------------------E
T ss_pred cce-------eeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc-------------------------c
Confidence 200 00235688899999999997654 444 457999999999875 2
Q ss_pred eEEEEeecCcCEEEEEEcCCCCEEEEEe--CCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCC
Q 001287 595 CRAVFSLVNSPVRALQFTSSGAKLAVGF--ECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHS 672 (1107)
Q Consensus 595 ~~~~~~~h~~~Vt~la~sp~~~~la~Gs--~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~ 672 (1107)
+...+ .+...|.++.|+|+++.+++++ .||.|+|||+.++..+ ..+.+|.++|.+|+|+
T Consensus 313 ~~~~~-~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v---~~l~gH~~~V~~l~~s--------------- 373 (420)
T 4gga_A 313 CLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV---AELKGHTSRVLSLTMS--------------- 373 (420)
T ss_dssp EEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE---EEECCCSSCEEEEEEC---------------
T ss_pred cceee-ccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE---EEEcCCCCCEEEEEEc---------------
Confidence 33444 3456799999999999887765 7999999999999887 4667899999999999
Q ss_pred CCCCCCCCCccEEEEEcCCceEEEEeCCCcc
Q 001287 673 EREVPVNPAEEVIIVLFKDAKISIVGGSSEN 703 (1107)
Q Consensus 673 ~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~ 703 (1107)
|++.+|++|+.|++|++||.....
T Consensus 374 -------pdg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 374 -------PDGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp -------TTSSCEEEEETTTEEEEECCSCSS
T ss_pred -------CCCCEEEEEecCCeEEEEECCCCC
Confidence 668889999999999999986543
No 103
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.94 E-value=4.3e-26 Score=256.97 Aligned_cols=164 Identities=12% Similarity=0.084 Sum_probs=125.2
Q ss_pred eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCe--eeeee-ccCCCeEEEEEec--CCCEEEEEcCCCcEEEEE
Q 001287 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS--LACCL-KWESNITAFSVIS--GSHFMYIGDENGLMSVIK 145 (1107)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~--~~~~~-~~~~~Vt~l~~~~--~~~~l~~g~~dg~V~vw~ 145 (1107)
.+.+|.++|++++|+|++.+|++++.|++|+|||+.++. ++..+ .|.+.|++++|++ ++++|++|+.|++|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 456899999999999999999999999999999998874 34444 7889999999985 488999999999999999
Q ss_pred eecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEE----EeCCccc
Q 001287 146 YDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF----VGGGKDL 221 (1107)
Q Consensus 146 ~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~----~~g~~~~ 221 (1107)
+........ +.+.+|. ..|.+++|+|...+.+|++++.||.|++||+....... ..+|
T Consensus 88 ~~~~~~~~~---~~~~~h~------------~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h--- 149 (316)
T 3bg1_A 88 EENGTWEKS---HEHAGHD------------SSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAH--- 149 (316)
T ss_dssp CSSSCCCEE---EEECCCS------------SCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSS---
T ss_pred CCCCcceEE---EEccCCC------------CceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccc---
Confidence 874221222 3355665 78999999996557889999999999999998753211 1122
Q ss_pred cccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCC-----------------CCEEEEEEcCCcEEEEeCC
Q 001287 222 QLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS-----------------GSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spd-----------------g~~l~sg~~dG~I~lWd~~ 280 (1107)
...|.+++|. |+ +.+|++|+.||.|++||+.
T Consensus 150 ---------------------------~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~ 197 (316)
T 3bg1_A 150 ---------------------------TIGCNAVSWA-PAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEE 197 (316)
T ss_dssp ---------------------------SSCBCCCEEC-CCCCC------CCSCCCCCCCBEECCBTTSBCCEEEEC
T ss_pred ---------------------------cCCcceEEEc-cccCCccccccccccCccccceEEEecCCCeEEEEEeC
Confidence 5567888875 66 4678888888888888874
No 104
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=1.3e-22 Score=266.15 Aligned_cols=443 Identities=11% Similarity=0.053 Sum_probs=296.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCC------CcEEEEEcCC
Q 001287 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND------NEIQVWSLES 107 (1107)
Q Consensus 34 ~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d------~~I~vWDl~s 107 (1107)
....+...+|+| +.||.++. +.|++|+.++.+...+..|...|.+++|||||.+|++++.+ ..|.+||+.+
T Consensus 13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~ 89 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN 89 (1045)
T ss_dssp CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT
T ss_pred ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCC
Confidence 345688899996 58888876 78999999888888888999999999999999999988754 3799999999
Q ss_pred CeeeeeeccCCCe-------EEEEEecCCCEEEEEcCC----CcEEEEEeecCCCceeecceeecccccccccCCCCCCC
Q 001287 108 RSLACCLKWESNI-------TAFSVISGSHFMYIGDEN----GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSH 176 (1107)
Q Consensus 108 ~~~~~~~~~~~~V-------t~l~~~~~~~~l~~g~~d----g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~ 176 (1107)
++......|...+ .+++|+|+++++++++.+ +...+|.++...+...+ +..+
T Consensus 90 g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~------------- 152 (1045)
T 1k32_A 90 GEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP----LNLG------------- 152 (1045)
T ss_dssp TEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE----CCSC-------------
T ss_pred CCeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEE----ecCC-------------
Confidence 8865555677777 899999999977888755 44456666554454443 2221
Q ss_pred CCeEEEEcccCCCCCEEEEEEC------------CCeEEEEEcc-CCEEEEEeCCccccccccccCCCCCCCCccccCCC
Q 001287 177 QPVVGVLPHPNSSGNRVLIAYE------------NALVILWDVS-EAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGIS 243 (1107)
Q Consensus 177 ~~V~~v~f~P~~~~~~ll~~~~------------dg~V~vwdl~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (1107)
....++|+| | +++++.. +....+|... +++...+.+|
T Consensus 153 -~~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~------------------------- 202 (1045)
T 1k32_A 153 -PATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDM------------------------- 202 (1045)
T ss_dssp -SCSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECC-------------------------
T ss_pred -CcceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCC-------------------------
Confidence 234566877 4 6777653 2345666532 2455555555
Q ss_pred CCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCC
Q 001287 244 EHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRS 323 (1107)
Q Consensus 244 ~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~ 323 (1107)
...+.+++|. ++ ..++++..||.+.+|.+...... ...+.. . ..... . ..
T Consensus 203 -----~~~v~~~~~s-~d-~l~~~~~~dg~~~l~~~~~~g~~----------~~~l~~-~--~~~~~--~--------~~ 252 (1045)
T 1k32_A 203 -----STHVSSPVIV-GH-RIYFITDIDGFGQIYSTDLDGKD----------LRKHTS-F--TDYYP--R--------HL 252 (1045)
T ss_dssp -----SSCCEEEEEE-TT-EEEEEECTTSSCEEEEEETTSCS----------CEECCC-C--CSSCE--E--------EE
T ss_pred -----CCcccceEEe-CC-EEEEEEeccCceEEEEEeCCCCc----------ceEecC-C--CCcce--e--------eE
Confidence 6788999996 77 66778888999999987532110 111100 0 00011 1 13
Q ss_pred CCCceEEEEeCCCCCCcceEEEEEcCccccccccceee-------eeeecCCCccceEEEc-cCCCCCCCCCcceEEEEc
Q 001287 324 NIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVS-------RVDITLTGSFADMILL-SSAGATVGNHKADLFVLT 395 (1107)
Q Consensus 324 ~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~-------~~~l~~~~~v~d~~~~-p~~~~~~~~~~~~l~vl~ 395 (1107)
+++|..++++... .+.+|.... ..+.... .........+..+.++ |++. .++...
T Consensus 253 SpDG~~la~~~~~--------~i~~~d~~~-~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~--------~la~~~ 315 (1045)
T 1k32_A 253 NTDGRRILFSKGG--------SIYIFNPDT-EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGD--------LIAFVS 315 (1045)
T ss_dssp EESSSCEEEEETT--------EEEEECTTT-CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGG--------CEEEEE
T ss_pred cCCCCEEEEEeCC--------EEEEecCCc-eEeeeeccCcccccccccccccccceeeecCCCCC--------EEEEEE
Confidence 4566666665322 222332211 1110000 0000112257788888 7732 233222
Q ss_pred cCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCcc
Q 001287 396 SPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIK 475 (1107)
Q Consensus 396 ~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1107)
.+.++.++........
T Consensus 316 -~~~i~~~~~~~~~~~~--------------------------------------------------------------- 331 (1045)
T 1k32_A 316 -RGQAFIQDVSGTYVLK--------------------------------------------------------------- 331 (1045)
T ss_dssp -TTEEEEECTTSSBEEE---------------------------------------------------------------
T ss_pred -cCEEEEEcCCCCceEE---------------------------------------------------------------
Confidence 5666666532111000
Q ss_pred ccccCCCCCCCCccccCCCCcEEEEEecCCcEE-EEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEe
Q 001287 476 WPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVR-IWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVG 554 (1107)
Q Consensus 476 wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIr-iWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg 554 (1107)
+.++....+..++++ +++.|++++.++.|. +||+.++... .+.+|...+.+++|+|||++|+++
T Consensus 332 --~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~------------~l~~~~~~~~~~~~SpDG~~la~~ 396 (1045)
T 1k32_A 332 --VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE------------KFEENLGNVFAMGVDRNGKFAVVA 396 (1045)
T ss_dssp --CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE------------ECCCCCCSEEEEEECTTSSEEEEE
T ss_pred --ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce------------EecCCccceeeeEECCCCCEEEEE
Confidence 000000012233678 888999998888888 9999877644 233777889999999999999999
Q ss_pred ccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCC---------
Q 001287 555 NEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECG--------- 625 (1107)
Q Consensus 555 ~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg--------- 625 (1107)
+.++.|++|++.+.. +...+..|.+.|.+++|||||++||+++.++
T Consensus 397 ~~~~~v~~~d~~tg~-------------------------~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~ 451 (1045)
T 1k32_A 397 NDRFEIMTVDLETGK-------------------------PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM 451 (1045)
T ss_dssp ETTSEEEEEETTTCC-------------------------EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCE
T ss_pred CCCCeEEEEECCCCc-------------------------eEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCC
Confidence 999999999997651 3344457899999999999999999887654
Q ss_pred -eEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcc
Q 001287 626 -RVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSEN 703 (1107)
Q Consensus 626 -~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~ 703 (1107)
.|++||+.++... .+..|...+..+.|+ |++..|+.++.++...+|+.....
T Consensus 452 ~~i~l~d~~~g~~~----~l~~~~~~~~~~~~s----------------------pdG~~l~~~s~~~~~~~~~~~~~~ 504 (1045)
T 1k32_A 452 QAIHVYDMEGRKIF----AATTENSHDYAPAFD----------------------ADSKNLYYLSYRSLDPSPDRVVLN 504 (1045)
T ss_dssp EEEEEEETTTTEEE----ECSCSSSBEEEEEEC----------------------TTSCEEEEEESCCCCCEECSSSSC
T ss_pred CeEEEEECCCCcEE----EeeCCCcccCCceEc----------------------CCCCEEEEEecccCCcCcchhccc
Confidence 8999999998743 556788889999999 668889999999999999976433
No 105
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.94 E-value=1.1e-24 Score=254.15 Aligned_cols=198 Identities=13% Similarity=0.179 Sum_probs=159.4
Q ss_pred CCCeEEEEEcCCCCEE-EEEECCCcEEEEeCCCc-----ceeeeCCCCCCEEEEEEEe-CCCEEEEEeCCCcEEEEEcCC
Q 001287 35 PATASILAFDHIQRLL-AIATLDGRIKVIGGDGI-----EGLLISPSQLPYKNLEFLQ-NQGFLISITNDNEIQVWSLES 107 (1107)
Q Consensus 35 ~~~i~~lafsp~~~~L-A~Gs~dg~I~iw~~~~~-----~~~~~~~h~~~V~~l~fs~-d~~~L~S~s~d~~I~vWDl~s 107 (1107)
......++++|+...+ ++|+.||.|+||++... ....+.+|.++|.+++|+| ++.+|++++.|+.|+|||+.+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 34 TWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp CCSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCT
T ss_pred ccCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccC
Confidence 3455679999987644 45889999999998553 2335678999999999999 899999999999999999998
Q ss_pred C-------eeeeee-ccCCCeEEEEEecCC-CEEEEEcCCCcEEEEEeecCCCceeecceee--cccccccccCCCCCCC
Q 001287 108 R-------SLACCL-KWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNI--SADALSEKAGFPLLSH 176 (1107)
Q Consensus 108 ~-------~~~~~~-~~~~~Vt~l~~~~~~-~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i--~~~~~~~~~~~~~~~~ 176 (1107)
+ +.+..+ .|...|++++|+|++ ++|++|+.||.|++|++.. ++... .+ ..|.
T Consensus 114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~--~~~~~---~~~~~~~~------------ 176 (402)
T 2aq5_A 114 GGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT--GAAVL---TLGPDVHP------------ 176 (402)
T ss_dssp TCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT--TEEEE---EECTTTCC------------
T ss_pred CCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC--CCccE---EEecCCCC------------
Confidence 7 334444 688999999999998 6999999999999999874 34432 24 4454
Q ss_pred CCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEe--CCccccccccccCCCCCCCCccccCCCCCCCCCCceeE
Q 001287 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG--GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISA 254 (1107)
Q Consensus 177 ~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vts 254 (1107)
..|.+++|+| ++.+|++++.||.|++||+.+++.+... +|. ...+.+
T Consensus 177 ~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----------------------------~~~~~~ 225 (402)
T 2aq5_A 177 DTIYSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHE-----------------------------GTRPVH 225 (402)
T ss_dssp SCEEEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSC-----------------------------SSSCCE
T ss_pred CceEEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCC-----------------------------CCcceE
Confidence 7899999998 6778999999999999999998876543 340 224788
Q ss_pred EEeecCCCCEEEEE---EcCCcEEEEeCCC
Q 001287 255 LCWASSSGSILAVG---YIDGDILLWNTST 281 (1107)
Q Consensus 255 l~w~spdg~~l~sg---~~dG~I~lWd~~~ 281 (1107)
++|. |+|.+|++| +.||.|++||+.+
T Consensus 226 ~~~~-~~~~~l~~g~~~~~d~~i~iwd~~~ 254 (402)
T 2aq5_A 226 AVFV-SEGKILTTGFSRMSERQVALWDTKH 254 (402)
T ss_dssp EEEC-STTEEEEEEECTTCCEEEEEEETTB
T ss_pred EEEc-CCCcEEEEeccCCCCceEEEEcCcc
Confidence 8886 899988888 6888899998753
No 106
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.2e-24 Score=246.98 Aligned_cols=121 Identities=13% Similarity=0.178 Sum_probs=100.7
Q ss_pred ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEE
Q 001287 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1107)
Q Consensus 115 ~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll 194 (1107)
.|.+.|++++|+|++++|++|+.||.|+||+++...+.+. ..+.+|. ..|.+++|+|..++.+|+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~---~~~~~h~------------~~v~~~~~~~~~~~~~l~ 73 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLI---DTLTGHE------------GPVWRVDWAHPKFGTILA 73 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEE---EEECCCS------------SCEEEEEECCGGGCSEEE
T ss_pred CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceee---eEecCCC------------CcEEEEEeCCCCCCCEEE
Confidence 6889999999999999999999999999999985444444 3366665 889999998754588899
Q ss_pred EEECCCeEEEEEccCCEE---EEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCC--CCEEEEEE
Q 001287 195 IAYENALVILWDVSEAQI---IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS--GSILAVGY 269 (1107)
Q Consensus 195 ~~~~dg~V~vwdl~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spd--g~~l~sg~ 269 (1107)
+++.||.|++||+.+++. ....+| ...|++++|. |+ +.+|++++
T Consensus 74 s~~~dg~v~iwd~~~~~~~~~~~~~~~------------------------------~~~v~~~~~~-~~~~~~~l~~~~ 122 (379)
T 3jrp_A 74 SCSYDGKVLIWKEENGRWSQIAVHAVH------------------------------SASVNSVQWA-PHEYGPLLLVAS 122 (379)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCC------------------------------SSCEEEEEEC-CGGGCSEEEEEE
T ss_pred EeccCCEEEEEEcCCCceeEeeeecCC------------------------------CcceEEEEeC-CCCCCCEEEEec
Confidence 999999999999999863 223334 6789999986 88 89999999
Q ss_pred cCCcEEEEeCCC
Q 001287 270 IDGDILLWNTST 281 (1107)
Q Consensus 270 ~dG~I~lWd~~~ 281 (1107)
.||.|++||+.+
T Consensus 123 ~d~~i~v~d~~~ 134 (379)
T 3jrp_A 123 SDGKVSVVEFKE 134 (379)
T ss_dssp TTSEEEEEECCT
T ss_pred CCCcEEEEecCC
Confidence 999999999864
No 107
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.1e-24 Score=248.57 Aligned_cols=167 Identities=14% Similarity=0.177 Sum_probs=137.3
Q ss_pred eeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcC--CCeeeeee-ccCCCeEEEEEecC--CCEEEEEcCCCcEEEE
Q 001287 70 LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE--SRSLACCL-KWESNITAFSVISG--SHFMYIGDENGLMSVI 144 (1107)
Q Consensus 70 ~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~--s~~~~~~~-~~~~~Vt~l~~~~~--~~~l~~g~~dg~V~vw 144 (1107)
..+.+|..+|++++|+|++.+|++++.|+.|+|||+. +++.+..+ .|...|++++|+++ +++|++|+.||.|++|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw 84 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 84 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEE
Confidence 3566899999999999999999999999999999998 44555555 58899999999977 8999999999999999
Q ss_pred EeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCE---EEEEeCCccc
Q 001287 145 KYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ---IIFVGGGKDL 221 (1107)
Q Consensus 145 ~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~---~~~~~g~~~~ 221 (1107)
+++....... ..+..|. ..|.+++|+|...+.+|++++.||.|++||+.... .....+|
T Consensus 85 d~~~~~~~~~---~~~~~~~------------~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~--- 146 (379)
T 3jrp_A 85 KEENGRWSQI---AVHAVHS------------ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH--- 146 (379)
T ss_dssp EEETTEEEEE---EEECCCS------------SCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECC---
T ss_pred EcCCCceeEe---eeecCCC------------cceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCC---
Confidence 9986321122 2345454 78999999985338889999999999999998862 2334444
Q ss_pred cccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecC-------------CCCEEEEEEcCCcEEEEeCCCC
Q 001287 222 QLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS-------------SGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp-------------dg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
...|++++|. | ++.+|++|+.||.|++||+.+.
T Consensus 147 ---------------------------~~~v~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 192 (379)
T 3jrp_A 147 ---------------------------AIGVNSASWA-PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD 192 (379)
T ss_dssp ---------------------------TTCEEEEEEC-CCC----------CTTCEEEEEETTSCEEEEEEETT
T ss_pred ---------------------------CCceEEEEEc-CccccccccccCCCCCCEEEEEeCCCeEEEEEecCC
Confidence 6789999986 7 7999999999999999998643
No 108
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.4e-25 Score=258.62 Aligned_cols=284 Identities=12% Similarity=0.051 Sum_probs=203.4
Q ss_pred eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCC
Q 001287 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADE 150 (1107)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~ 150 (1107)
...+-..+|.+|+|+|||.+++|++.|++|+ |...++.+ -.|+..|.+++|+|++ .++.+.+|+.+
T Consensus 10 ~~~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l--~gh~~~v~~V~FsPdg-------~~~~~~~~~~~--- 75 (588)
T 2j04_A 10 DRKEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI--NCNSKNLFHVKEFPLE-------FENKLDFELAQ--- 75 (588)
T ss_dssp CSCCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC--SSBGGGTEEEEEECCC-------CCCTTTTSCCC---
T ss_pred cHhHhhccEEEEEECCCCCEEEEEcCCceee--ccccccee--cCCCccEEEEEECCCC-------CcceEEEEeCC---
Confidence 4455678999999999999999999999999 87666555 3788999999999999 45544444322
Q ss_pred CceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCC
Q 001287 151 GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDS 230 (1107)
Q Consensus 151 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~ 230 (1107)
+... ..+. +. ..|.+++|+| +|++|++++.||.|++||..+ +.....|...
T Consensus 76 ~~~~---~~~~-~~------------~~V~~vawSP--dG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~--------- 126 (588)
T 2j04_A 76 QNGL---LNSQ-PV------------CYPRVCKPSP--IDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGN--------- 126 (588)
T ss_dssp SSCS---STTS-CS------------CCEEEEEECS--SSSCEEEEETTSCEEEEETTE--EEEECCCSSC---------
T ss_pred CceE---eecC-CC------------CcEEEEEECC--CCCEEEEEeCCCcEEEEeCCc--eeeeccCCCc---------
Confidence 2222 1111 12 7899999999 788899999999999999655 3332223110
Q ss_pred CCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccce
Q 001287 231 PSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPV 310 (1107)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i 310 (1107)
.....|.+++|. |||++|++|+.||+|++||+.++.... +. +
T Consensus 127 ----------------~~~~sv~svafS-PDG~~LAsgs~DGtVkIWd~~~~~l~~--------~~-------------~ 168 (588)
T 2j04_A 127 ----------------LSSRTYHCFEWN-PIESSIVVGNEDGELQFFSIRKNSENT--------PE-------------F 168 (588)
T ss_dssp ----------------STTTCEEEEEEC-SSSSCEEEEETTSEEEEEECCCCTTTC--------CC-------------C
T ss_pred ----------------cccccEEEEEEc-CCCCEEEEEcCCCEEEEEECCCCcccc--------cc-------------c
Confidence 014469999985 999999999999999999997541000 00 0
Q ss_pred EEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcce
Q 001287 311 IVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKAD 390 (1107)
Q Consensus 311 ~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~ 390 (1107)
..+ ..+..
T Consensus 169 i~l------------------------------~ti~~------------------------------------------ 176 (588)
T 2j04_A 169 YFE------------------------------SSIRL------------------------------------------ 176 (588)
T ss_dssp EEE------------------------------EEEEC------------------------------------------
T ss_pred eee------------------------------eeeec------------------------------------------
Confidence 000 00000
Q ss_pred EEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCc
Q 001287 391 LFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQ 470 (1107)
Q Consensus 391 l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1107)
T Consensus 177 -------------------------------------------------------------------------------- 176 (588)
T 2j04_A 177 -------------------------------------------------------------------------------- 176 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeee-cCCCCCeEEEEEEeCCC
Q 001287 471 AGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEV-AGSRAPVSTLSFCFINS 549 (1107)
Q Consensus 471 ~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l-~~h~~~Vt~l~fspd~~ 549 (1107)
..+||...+..++++|++ +++++.|++|++||+.+..+.. +. ..+ .+|...|.+++|+ ++
T Consensus 177 -------~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~-------~~-~tL~~~h~~~V~svaFs--g~ 237 (588)
T 2j04_A 177 -------SDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQP-------VS-RMIQNASRRKITDLKIV--DY 237 (588)
T ss_dssp -------SCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCC-------CE-EEEECCCSSCCCCEEEE--TT
T ss_pred -------ccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcccc-------ce-eeecccccCcEEEEEEE--CC
Confidence 001122222334778888 8889999999999998877320 00 124 4788899999999 68
Q ss_pred eEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEE--cCCCCEEEEEeCCCeE
Q 001287 550 SLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQF--TSSGAKLAVGFECGRV 627 (1107)
Q Consensus 550 ~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~--sp~~~~la~Gs~dg~V 627 (1107)
.||+++ +|.|++|++... +......+|.+.|..++| +|++..|+++++||+
T Consensus 238 ~LASa~-~~tIkLWd~~~~-------------------------~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~- 290 (588)
T 2j04_A 238 KVVLTC-PGYVHKIDLKNY-------------------------SISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY- 290 (588)
T ss_dssp EEEEEC-SSEEEEEETTTT-------------------------EEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-
T ss_pred EEEEEe-CCeEEEEECCCC-------------------------eEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-
Confidence 999997 699999998875 121222389999999999 999999999999999
Q ss_pred EEEEcC
Q 001287 628 AVLDMN 633 (1107)
Q Consensus 628 ~iwd~~ 633 (1107)
++|...
T Consensus 291 klw~~d 296 (588)
T 2j04_A 291 KVLLED 296 (588)
T ss_dssp EEEESS
T ss_pred EEEeec
Confidence 999887
No 109
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=1.5e-22 Score=265.50 Aligned_cols=377 Identities=13% Similarity=0.078 Sum_probs=252.1
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECC------CcEEEEeCCCcceeeeCCCCCCE-------EEEEEEeCCCEEEEEeCC
Q 001287 31 HYGIPATASILAFDHIQRLLAIATLD------GRIKVIGGDGIEGLLISPSQLPY-------KNLEFLQNQGFLISITND 97 (1107)
Q Consensus 31 ~~G~~~~i~~lafsp~~~~LA~Gs~d------g~I~iw~~~~~~~~~~~~h~~~V-------~~l~fs~d~~~L~S~s~d 97 (1107)
..+|+..+.+++|||||++||.++.+ ..|++|+..+.+...+..|...+ ..++|+|||..+++.+.+
T Consensus 48 lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~ 127 (1045)
T 1k32_A 48 IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAM 127 (1045)
T ss_dssp EECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTT
T ss_pred eeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEEECCc
Confidence 35678899999999999999998654 47999999888877888898888 999999999866776644
Q ss_pred ------CcEEEEEcCCCeeeeee--------------------------------------------------ccCCCeE
Q 001287 98 ------NEIQVWSLESRSLACCL--------------------------------------------------KWESNIT 121 (1107)
Q Consensus 98 ------~~I~vWDl~s~~~~~~~--------------------------------------------------~~~~~Vt 121 (1107)
..|.+||+.++...... .|...+.
T Consensus 128 ~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~ 207 (1045)
T 1k32_A 128 QPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVS 207 (1045)
T ss_dssp SSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCE
T ss_pred CCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCccc
Confidence 35888888776543211 2334566
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCe
Q 001287 122 AFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENAL 201 (1107)
Q Consensus 122 ~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~ 201 (1107)
++.|+++ .++++++.+|.+.||.++...+...+ +..+ ..+..++|+| +|++|+.+ .++.
T Consensus 208 ~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~----l~~~-------------~~~~~~~~Sp--DG~~la~~-~~~~ 266 (1045)
T 1k32_A 208 SPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRK----HTSF-------------TDYYPRHLNT--DGRRILFS-KGGS 266 (1045)
T ss_dssp EEEEETT-EEEEEECTTSSCEEEEEETTSCSCEE----CCCC-------------CSSCEEEEEE--SSSCEEEE-ETTE
T ss_pred ceEEeCC-EEEEEEeccCceEEEEEeCCCCcceE----ecCC-------------CCcceeeEcC--CCCEEEEE-eCCE
Confidence 6677766 56667777888888888764443332 2222 2355668888 67767776 5899
Q ss_pred EEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeec-CCCCEEEEEEcCCcEEEEeCC
Q 001287 202 VILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS-SSGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 202 V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~s-pdg~~l~sg~~dG~I~lWd~~ 280 (1107)
|.+||+...++..+.++.. ... ... ......+.+++| + |||++|++++ ++.|.+|+..
T Consensus 267 i~~~d~~~~~l~~l~~~~~-~~~----------~~~--------~~~~~~v~~~~~-S~pdG~~la~~~-~~~i~~~~~~ 325 (1045)
T 1k32_A 267 IYIFNPDTEKIEKIEIGDL-ESP----------EDR--------IISIPSKFAEDF-SPLDGDLIAFVS-RGQAFIQDVS 325 (1045)
T ss_dssp EEEECTTTCCEEECCCCCC-CBC----------CSE--------EEECGGGGEEEE-EECGGGCEEEEE-TTEEEEECTT
T ss_pred EEEecCCceEeeeeccCcc-ccc----------ccc--------cccccccceeee-cCCCCCEEEEEE-cCEEEEEcCC
Confidence 9999996655543222100 000 000 001346889997 7 9999999887 8899999987
Q ss_pred CCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCcccccccccee
Q 001287 281 TTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCV 360 (1107)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~ 360 (1107)
++.. ..+.. . ....+.. +..+ ++..+++++.+
T Consensus 326 ~~~~------------~~~~~--~-~~~~~~~--------~~~s-dg~~l~~~s~~------------------------ 357 (1045)
T 1k32_A 326 GTYV------------LKVPE--P-LRIRYVR--------RGGD-TKVAFIHGTRE------------------------ 357 (1045)
T ss_dssp SSBE------------EECSC--C-SCEEEEE--------ECSS-SEEEEEEEETT------------------------
T ss_pred CCce------------EEccC--C-CcceEEe--------eeEc-CCCeEEEEECC------------------------
Confidence 5421 11100 0 0001111 2244 56555554432
Q ss_pred eeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEE-EEeccceeeeecccCCCCCCCCccCCcccccCCCceeE
Q 001287 361 SRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLH-FYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTV 439 (1107)
Q Consensus 361 ~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~ 439 (1107)
+.++ +|+.......
T Consensus 358 -------------------------------------~~l~~~~d~~~~~~~---------------------------- 372 (1045)
T 1k32_A 358 -------------------------------------GDFLGIYDYRTGKAE---------------------------- 372 (1045)
T ss_dssp -------------------------------------EEEEEEEETTTCCEE----------------------------
T ss_pred -------------------------------------CceEEEEECCCCCce----------------------------
Confidence 1222 2221100000
Q ss_pred EEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeE
Q 001287 440 AEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKL 519 (1107)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~ 519 (1107)
++. ++...+..++++|+++.|++++.|+.|++||+.++.+.
T Consensus 373 -------------------------------------~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~- 413 (1045)
T 1k32_A 373 -------------------------------------KFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPT- 413 (1045)
T ss_dssp -------------------------------------ECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-
T ss_pred -------------------------------------Eec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceE-
Confidence 011 11112234478999999999999999999999988865
Q ss_pred EEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCc----------eEEEEEecCCCCCccceeeccCcCcceeccc
Q 001287 520 ICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFG----------LVYIYNLNGSLDAKNFLFVLETKSEVHALPE 589 (1107)
Q Consensus 520 ~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg----------~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (1107)
..+.+|...|.+++|||||++|++++.++ .|++|++...
T Consensus 414 ----------~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g--------------------- 462 (1045)
T 1k32_A 414 ----------VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR--------------------- 462 (1045)
T ss_dssp ----------EEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT---------------------
T ss_pred ----------EeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC---------------------
Confidence 22446778899999999999999887654 8999998764
Q ss_pred CCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeE
Q 001287 590 GKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSV 637 (1107)
Q Consensus 590 ~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~ 637 (1107)
....+..|...+.+++|+|||++|++++.++...+|+.....+
T Consensus 463 -----~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~ 505 (1045)
T 1k32_A 463 -----KIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNF 505 (1045)
T ss_dssp -----EEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCE
T ss_pred -----cEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhcccc
Confidence 1344567788899999999999999999988888888765443
No 110
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.93 E-value=1.6e-23 Score=246.85 Aligned_cols=209 Identities=11% Similarity=0.142 Sum_probs=151.8
Q ss_pred eeeecCCCCCeEEEEEcCCC----------CEEEEEECC----CcEEEEeCC----------------------------
Q 001287 28 IAVHYGIPATASILAFDHIQ----------RLLAIATLD----GRIKVIGGD---------------------------- 65 (1107)
Q Consensus 28 ~~~~~G~~~~i~~lafsp~~----------~~LA~Gs~d----g~I~iw~~~---------------------------- 65 (1107)
...++-.+-...++.|-|+. .++++|+.. ..|+|+.+.
T Consensus 38 ~~~~~~l~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~ 117 (430)
T 2xyi_A 38 LVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCG 117 (430)
T ss_dssp EEEEEECSSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------
T ss_pred HHhhcCCCCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCC
Confidence 44455555566788888875 478888863 567777532
Q ss_pred CcceeeeCCCCCCEEEEEEEeC-CCEEEEEeCCCcEEEEEcCC----------Ceeeeee-ccCCCeEEEEEecCCC-EE
Q 001287 66 GIEGLLISPSQLPYKNLEFLQN-QGFLISITNDNEIQVWSLES----------RSLACCL-KWESNITAFSVISGSH-FM 132 (1107)
Q Consensus 66 ~~~~~~~~~h~~~V~~l~fs~d-~~~L~S~s~d~~I~vWDl~s----------~~~~~~~-~~~~~Vt~l~~~~~~~-~l 132 (1107)
.........|.++|++++|+|+ +.+|++++.|+.|+|||+.+ ...+..+ .|...|++++|+|++. +|
T Consensus 118 ~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 197 (430)
T 2xyi_A 118 KIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYL 197 (430)
T ss_dssp CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEE
T ss_pred ceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeE
Confidence 1122455679999999999997 67899999999999999986 3444443 6888999999999988 99
Q ss_pred EEEcCCCcEEEEEeecCCC--ceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCC
Q 001287 133 YIGDENGLMSVIKYDADEG--KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA 210 (1107)
Q Consensus 133 ~~g~~dg~V~vw~~d~~~~--~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~ 210 (1107)
++|+.||.|++|++..... ........+..|. ..|.+++|+|. ++..|++++.||.|++||+++.
T Consensus 198 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~------------~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~ 264 (430)
T 2xyi_A 198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHT------------AVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNN 264 (430)
T ss_dssp EEECTTSCEEEEETTSCCBGGGEEECSEEECCCS------------SCEEEEEECSS-CTTEEEEEETTSEEEEEETTCS
T ss_pred EEEeCCCeEEEEeCCCCCCCCceeccceeecCCC------------CCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCC
Confidence 9999999999999875221 1111112234444 78999999996 4667999999999999999875
Q ss_pred E---E-EEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCC-EEEEEEcCCcEEEEeCC
Q 001287 211 Q---I-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 211 ~---~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~-~l~sg~~dG~I~lWd~~ 280 (1107)
. . ..+..| ...|++++|. |++. .|++|+.||.|++||+.
T Consensus 265 ~~~~~~~~~~~~------------------------------~~~v~~i~~~-p~~~~~l~tg~~dg~v~vwd~~ 308 (430)
T 2xyi_A 265 NTSKPSHTVDAH------------------------------TAEVNCLSFN-PYSEFILATGSADKTVALWDLR 308 (430)
T ss_dssp CSSSCSEEEECC------------------------------SSCEEEEEEC-SSCTTEEEEEETTSEEEEEETT
T ss_pred CCCcceeEeecC------------------------------CCCeEEEEeC-CCCCCEEEEEeCCCeEEEEeCC
Confidence 2 2 222233 5667788875 7665 56777777777777764
No 111
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2e-23 Score=247.65 Aligned_cols=160 Identities=14% Similarity=0.084 Sum_probs=124.6
Q ss_pred CCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCe---eeeeecc------------------------------------
Q 001287 76 QLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS---LACCLKW------------------------------------ 116 (1107)
Q Consensus 76 ~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~---~~~~~~~------------------------------------ 116 (1107)
..|+.+++|+++|.+|+++ .++.|.+||+.+++ .+..+..
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3589999999999865555 58899999999998 5544421
Q ss_pred -------------------CCCeEEEEEecCCCEE-EEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCC
Q 001287 117 -------------------ESNITAFSVISGSHFM-YIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSH 176 (1107)
Q Consensus 117 -------------------~~~Vt~l~~~~~~~~l-~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~ 176 (1107)
.+.|++++|+|++++| ++|+.||.|+||++....+...+. +....+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~------------ 149 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKL-RKRFCFS------------ 149 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEE-EEEEECS------------
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeee-eecccCC------------
Confidence 1259999999999996 899999999999998433444432 1111222
Q ss_pred CCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEE-----EEeCCccccccccccCCCCCCCCccccCCCCCCCCCCc
Q 001287 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQII-----FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 251 (1107)
Q Consensus 177 ~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~-----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1107)
..|++++|+| ++.+|++++.+|.|.+|++.++... .+.+| ...
T Consensus 150 ~~v~~~~~sp--~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h------------------------------~~~ 197 (450)
T 2vdu_B 150 KRPNAISIAE--DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGH------------------------------VSM 197 (450)
T ss_dssp SCEEEEEECT--TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEEC------------------------------SSC
T ss_pred CCceEEEEcC--CCCEEEEEeCCCcEEEEecCCcccccccceeeecc------------------------------cCc
Confidence 6799999988 6888999999999999999876532 12223 678
Q ss_pred eeEEEeecCC---CCEEEEEEcCCcEEEEeCCCC
Q 001287 252 ISALCWASSS---GSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 252 Vtsl~w~spd---g~~l~sg~~dG~I~lWd~~~~ 282 (1107)
|++++|. |+ +.+|++|+.||.|++||+.++
T Consensus 198 v~~~~~s-p~~~~~~~l~s~~~d~~i~vwd~~~~ 230 (450)
T 2vdu_B 198 LTDVHLI-KDSDGHQFIITSDRDEHIKISHYPQC 230 (450)
T ss_dssp EEEEEEE-ECTTSCEEEEEEETTSCEEEEEESCT
T ss_pred eEEEEEc-CCCCCCcEEEEEcCCCcEEEEECCCC
Confidence 9999986 99 999999999999999998643
No 112
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.92 E-value=1.4e-23 Score=240.62 Aligned_cols=192 Identities=10% Similarity=0.158 Sum_probs=142.9
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEE-EEEeCCCcEEEEEcCCCee
Q 001287 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFL-ISITNDNEIQVWSLESRSL 110 (1107)
Q Consensus 32 ~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L-~S~s~d~~I~vWDl~s~~~ 110 (1107)
.+|...|.+++|+|++++||+|+.|| ++||+.+..+......+. .+..++|++++..+ ++++.|++|++||+.+++.
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~ 93 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR-HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQD 93 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS-CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEE
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC-CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcE
Confidence 56789999999999999999999776 789998776655443333 58889999888877 4566789999999999999
Q ss_pred eeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCC
Q 001287 111 ACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1107)
Q Consensus 111 ~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~ 190 (1107)
+..+.+...|.+++++++. ++++ .++.|++|++.... +.... +.. . ..+.+ ++|
T Consensus 94 ~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~-~~~~~---~~~-~------------~~~~~--~s~---- 147 (355)
T 3vu4_A 94 VSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPW-KRITD---DIR-F------------GGVCE--FSN---- 147 (355)
T ss_dssp EEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTC-CBSSC---CEE-E------------EEEEE--EET----
T ss_pred EEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCc-eeeEE---ecc-C------------CceEE--EEc----
Confidence 9999899999999998654 4444 47889999987531 22211 211 1 22333 433
Q ss_pred CEEEE--EECCCeEEEEEccCCE-----------------EEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCc
Q 001287 191 NRVLI--AYENALVILWDVSEAQ-----------------IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 251 (1107)
Q Consensus 191 ~~ll~--~~~dg~V~vwdl~~~~-----------------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1107)
..+++ |+.+|.|++||+.++. ...+.+| ...
T Consensus 148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h------------------------------~~~ 197 (355)
T 3vu4_A 148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH------------------------------TNP 197 (355)
T ss_dssp TEEEEEESSCTTCEEEEECCC------------------CCEEECCC------------------------------SSC
T ss_pred cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc------------------------------CCc
Confidence 34665 5789999999999865 3334444 788
Q ss_pred eeEEEeecCCCCEEEEEEcCCc-EEEEeCCCC
Q 001287 252 ISALCWASSSGSILAVGYIDGD-ILLWNTSTT 282 (1107)
Q Consensus 252 Vtsl~w~spdg~~l~sg~~dG~-I~lWd~~~~ 282 (1107)
|++++|. |+|.+|++|+.||+ |++||+.++
T Consensus 198 v~~~~~s-~~g~~l~s~s~d~~~v~iwd~~~~ 228 (355)
T 3vu4_A 198 IKMVRLN-RKSDMVATCSQDGTIIRVFKTEDG 228 (355)
T ss_dssp EEEEEEC-TTSSEEEEEETTCSEEEEEETTTC
T ss_pred eEEEEEC-CCCCEEEEEeCCCCEEEEEECCCC
Confidence 9999985 99999999999998 999999754
No 113
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.92 E-value=3.9e-23 Score=243.54 Aligned_cols=153 Identities=21% Similarity=0.246 Sum_probs=126.0
Q ss_pred ccCC-CCcEEEEEecCCcEEEEeCCCCc---eeEEEeeccceeeeeecCCCCCeEEEEEEeCCC-eEEEeccCceEEEEE
Q 001287 490 KCHS-VDRVYLAGYHDGSVRIWDATYPV---FKLICALDAEVQGIEVAGSRAPVSTLSFCFINS-SLAVGNEFGLVYIYN 564 (1107)
Q Consensus 490 ~~s~-~~~~laTgs~DgtIriWd~~~~~---l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~-~Lasg~~dg~V~vw~ 564 (1107)
+++| ++.+|++++.||.|++||+.... .. ..+..|...|++|+|+|++. +|++|+.||.|+||+
T Consensus 238 ~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~-----------~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd 306 (430)
T 2xyi_A 238 AWHLLHESLFGSVADDQKLMIWDTRNNNTSKPS-----------HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 306 (430)
T ss_dssp EECSSCTTEEEEEETTSEEEEEETTCSCSSSCS-----------EEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred EEeCCCCCEEEEEeCCCeEEEEECCCCCCCcce-----------eEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEe
Confidence 3444 45689999999999999998763 21 23568889999999999997 688999999999999
Q ss_pred ecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCC-EEEEEeCCCeEEEEEcCC---------
Q 001287 565 LNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGA-KLAVGFECGRVAVLDMNL--------- 634 (1107)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~-~la~Gs~dg~V~iwd~~~--------- 634 (1107)
+.... .++..+..|...|++++|+|+++ +|++|+.||.|+|||+..
T Consensus 307 ~~~~~------------------------~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 362 (430)
T 2xyi_A 307 LRNLK------------------------LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED 362 (430)
T ss_dssp TTCTT------------------------SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHH
T ss_pred CCCCC------------------------CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccc
Confidence 98642 14567788999999999999984 799999999999999987
Q ss_pred -----CeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCcc-EEEEEcCCceEEEEeCCCc
Q 001287 635 -----LSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEE-VIIVLFKDAKISIVGGSSE 702 (1107)
Q Consensus 635 -----~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~-~L~s~s~Dg~v~v~d~~~g 702 (1107)
+.++ ..+.+|...|.+++|+ |++. +|++++.||.|.+|+...+
T Consensus 363 ~~~~~~~~~---~~~~~h~~~v~~~~~~----------------------p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 363 AEDGPPELL---FIHGGHTAKISDFSWN----------------------PNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp HHHCCTTEE---EECCCCSSCEEEEEEC----------------------SSSTTEEEEEETTSEEEEEEECHH
T ss_pred cccCCcceE---EEcCCCCCCceEEEEC----------------------CCCCCEEEEEECCCCEEEeEcccc
Confidence 2444 3556799999999999 4466 8999999999999998653
No 114
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.92 E-value=2.7e-23 Score=238.12 Aligned_cols=168 Identities=10% Similarity=0.078 Sum_probs=111.3
Q ss_pred EecCCcEEEEeCCCCceeEEEeecc-----ceeeeeecCCCCCeEEEEEEeCCCeEEEeccCce-EEEEEecCCCCCccc
Q 001287 501 GYHDGSVRIWDATYPVFKLICALDA-----EVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGL-VYIYNLNGSLDAKNF 574 (1107)
Q Consensus 501 gs~DgtIriWd~~~~~l~~~~~l~~-----~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~-V~vw~~~~~~~~~~~ 574 (1107)
|+.||+|++||+..+........+. ......+.+|..+|++++|+|++++|++|+.||+ |+||++...
T Consensus 155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~------ 228 (355)
T 3vu4_A 155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG------ 228 (355)
T ss_dssp SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC------
T ss_pred CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC------
Confidence 6889999999998754100000000 0001347899999999999999999999999998 999999865
Q ss_pred eeeccCcCcceecccCCcceeEEEEe-e-cCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCC-----C
Q 001287 575 LFVLETKSEVHALPEGKISLCRAVFS-L-VNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISG-----S 647 (1107)
Q Consensus 575 ~~~~~~~~~~~~~~~~~g~~~~~~~~-~-h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~-----h 647 (1107)
.++..+. + |...|++++|+|++++||+|+.||+|+|||+..+..... ..+.+ +
T Consensus 229 -------------------~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~-~~~~~~~~~~~ 288 (355)
T 3vu4_A 229 -------------------VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKR-HALKGWINMKY 288 (355)
T ss_dssp -------------------CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCS-EETTTTEECCC
T ss_pred -------------------cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccc-ccccceeeccc
Confidence 3566676 4 999999999999999999999999999999976532100 01111 0
Q ss_pred ---CCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcc
Q 001287 648 ---SSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSEN 703 (1107)
Q Consensus 648 ---~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~ 703 (1107)
...+....+... ...........+++..|++++.||.+.+|+...++
T Consensus 289 ~~~~~~~~~~~~~~~---------~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 289 FQSEWSLCNFKLSVD---------KHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CCCSSCSEEEECCCC---------TTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred cccccceeEEEeccC---------CCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 011111111100 00001122234678899999999999999976533
No 115
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.92 E-value=4.3e-22 Score=234.42 Aligned_cols=199 Identities=11% Similarity=0.068 Sum_probs=146.7
Q ss_pred CCCCeEEEE---EcCCCCEEEEEEC--------------CC--cEEEEeCCCc--ceeeeCCCCCCEEEEEEEeCCCEEE
Q 001287 34 IPATASILA---FDHIQRLLAIATL--------------DG--RIKVIGGDGI--EGLLISPSQLPYKNLEFLQNQGFLI 92 (1107)
Q Consensus 34 ~~~~i~~la---fsp~~~~LA~Gs~--------------dg--~I~iw~~~~~--~~~~~~~h~~~V~~l~fs~d~~~L~ 92 (1107)
....+..++ |+|++..+.+.+. ++ .|.+|+.... ..+....+...+.+++|+|++.+++
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 138 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAI 138 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEE
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEE
Confidence 345567788 8998887776543 23 3444444322 3333333445577999999766777
Q ss_pred EEeCCCcEEEEEcCCCeeeeee------ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccc
Q 001287 93 SITNDNEIQVWSLESRSLACCL------KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALS 166 (1107)
Q Consensus 93 S~s~d~~I~vWDl~s~~~~~~~------~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~ 166 (1107)
+++.++.|++||+.+++..... .|.+.|++++|++++.++++++.++.|++|+++. ++... .+..+.
T Consensus 139 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~--~~~~~---~~~~~~-- 211 (433)
T 3bws_A 139 PLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT--LAYKA---TVDLTG-- 211 (433)
T ss_dssp EBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT--CCEEE---EEECSS--
T ss_pred EeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC--ceEEE---EEcCCC--
Confidence 7777899999999999877633 4667899999999999999999999999999764 34432 244444
Q ss_pred cccCCCCCCCCCeEEEEcccCCCCCEEEEEE-CCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCC
Q 001287 167 EKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEH 245 (1107)
Q Consensus 167 ~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~-~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1107)
..+.+++|+| ++.+++++. .++.|++||+.+++.+....+
T Consensus 212 ----------~~~~~~~~~~--~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--------------------------- 252 (433)
T 3bws_A 212 ----------KWSKILLYDP--IRDLVYCSNWISEDISVIDRKTKLEIRKTDK--------------------------- 252 (433)
T ss_dssp ----------SSEEEEEEET--TTTEEEEEETTTTEEEEEETTTTEEEEECCC---------------------------
T ss_pred ----------CCeeEEEEcC--CCCEEEEEecCCCcEEEEECCCCcEEEEecC---------------------------
Confidence 6799999988 576675554 799999999999887665433
Q ss_pred CCCCCceeEEEeecCCCCEEEEEE--------cCCcEEEEeCCCC
Q 001287 246 QPEEKEISALCWASSSGSILAVGY--------IDGDILLWNTSTT 282 (1107)
Q Consensus 246 ~~~~~~Vtsl~w~spdg~~l~sg~--------~dG~I~lWd~~~~ 282 (1107)
...+.+++|. |+|+.|++++ .||.|++||+.++
T Consensus 253 ---~~~~~~~~~~-~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~ 293 (433)
T 3bws_A 253 ---IGLPRGLLLS-KDGKELYIAQFSASNQESGGGRLGIYSMDKE 293 (433)
T ss_dssp ---CSEEEEEEEC-TTSSEEEEEEEESCTTCSCCEEEEEEETTTT
T ss_pred ---CCCceEEEEc-CCCCEEEEEECCCCccccCCCeEEEEECCCC
Confidence 4458899985 9999999988 4889999998643
No 116
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.92 E-value=2.5e-23 Score=241.96 Aligned_cols=226 Identities=13% Similarity=0.127 Sum_probs=143.9
Q ss_pred CCCCCeEEEEEc---CCC-CEEEEEECCCcEEEEeCCCc----------ceeeeCCCCCCEEEEE---------------
Q 001287 33 GIPATASILAFD---HIQ-RLLAIATLDGRIKVIGGDGI----------EGLLISPSQLPYKNLE--------------- 83 (1107)
Q Consensus 33 G~~~~i~~lafs---p~~-~~LA~Gs~dg~I~iw~~~~~----------~~~~~~~h~~~V~~l~--------------- 83 (1107)
..+....++++. |++ .++|+|. |+.|++|..... ..+....|..++..+.
T Consensus 13 pl~~~p~~~~w~~~~~~~~~l~a~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (393)
T 4gq1_A 13 PLNVRPYTTTWCSQSPSCSNLLAIGH-DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGD 91 (393)
T ss_dssp CTTCCEEEEEECTTSGGGTTEEEEEE-SSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC-----
T ss_pred cCCCCCeEEEEeCCCCCCCCEEEEEC-CCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCC
Confidence 334455666663 443 4666665 788999975211 1111222333444444
Q ss_pred -----EEeCCCEEEEEeCCCcEEEEEcCCCeeeee-----e-ccCCCeEEEEEec--------CCCEEEEEcCCCcEEEE
Q 001287 84 -----FLQNQGFLISITNDNEIQVWSLESRSLACC-----L-KWESNITAFSVIS--------GSHFMYIGDENGLMSVI 144 (1107)
Q Consensus 84 -----fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~-----~-~~~~~Vt~l~~~~--------~~~~l~~g~~dg~V~vw 144 (1107)
+.+++.+|++++.|++|++||+.++..... + .|.+.|++++|+| ++++|++|+.|++|+||
T Consensus 92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W 171 (393)
T 4gq1_A 92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW 171 (393)
T ss_dssp -----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred cceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence 445667899999999999999999865432 2 5889999999998 78899999999999999
Q ss_pred EeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCC-ccccc
Q 001287 145 KYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGG-KDLQL 223 (1107)
Q Consensus 145 ~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~-~~~~~ 223 (1107)
++... .... .+..|. .+|.+++|+|. ++.+|++++.||+|++||+.+++......+ .....
T Consensus 172 d~~~~--~~~~---~~~~~~------------~~v~~v~~~p~-~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~ 233 (393)
T 4gq1_A 172 RLTDE--GPIL---AGYPLS------------SPGISVQFRPS-NPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKN 233 (393)
T ss_dssp EEETT--EEEE---EEEECS------------SCEEEEEEETT-EEEEEEEEETTSEEEEEETTCCC----------CSC
T ss_pred ECCCC--ceee---eecCCC------------CCcEEEEECCC-CCceEEecCCCCEEEEEECCCCcccccccccCCccc
Confidence 98753 2221 133444 78999999995 345799999999999999998765432211 00000
Q ss_pred cccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 224 KDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
..... ... ...........+...|.++.|..++|..|++++.|+++++||+...
T Consensus 234 ~~~~s----~~~-~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~ 287 (393)
T 4gq1_A 234 PWLLT----LNT-LPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN 287 (393)
T ss_dssp CCSEE----EES-GGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---
T ss_pred ceEEe----ccc-ccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC
Confidence 00000 000 0000001112236789999998899999999999999999999754
No 117
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.7e-24 Score=268.72 Aligned_cols=207 Identities=15% Similarity=0.230 Sum_probs=169.9
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCc---ceeeeCCCCCCEEEEEEEeC--CCEEEEEeCCCcEEEEE
Q 001287 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI---EGLLISPSQLPYKNLEFLQN--QGFLISITNDNEIQVWS 104 (1107)
Q Consensus 30 ~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~---~~~~~~~h~~~V~~l~fs~d--~~~L~S~s~d~~I~vWD 104 (1107)
...||.+.|++++|+|++++||+|+.||.|+||+.... ......+|.++|++++|+++ +.+|++++.||.|++||
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd 83 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence 44689999999999999999999999999999998532 33467789999999999988 89999999999999999
Q ss_pred cCCCe--eeeee-ccCCCeEEEEEecC--CCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCe
Q 001287 105 LESRS--LACCL-KWESNITAFSVISG--SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1107)
Q Consensus 105 l~s~~--~~~~~-~~~~~Vt~l~~~~~--~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1107)
+.+++ .+..+ .|...|++++|+|+ ++++++|+.||.|++|++........ ..+..|. ..|
T Consensus 84 ~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~---~~~~~~~------------~~v 148 (753)
T 3jro_A 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP---IIIDAHA------------IGV 148 (753)
T ss_dssp EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC---EEEECCS------------SCE
T ss_pred CCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce---eEeecCC------------Cce
Confidence 99986 33333 68899999999999 99999999999999999876422221 2344554 789
Q ss_pred EEEEcccCC-----------CCCEEEEEECCCeEEEEEccCC----EEE-EEeCCccccccccccCCCCCCCCccccCCC
Q 001287 180 VGVLPHPNS-----------SGNRVLIAYENALVILWDVSEA----QII-FVGGGKDLQLKDGVVDSPSEGDSTFLEGIS 243 (1107)
Q Consensus 180 ~~v~f~P~~-----------~~~~ll~~~~dg~V~vwdl~~~----~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (1107)
.++.|+|.. ++..+++|+.||.|++||+.++ ... ...+|
T Consensus 149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h------------------------- 203 (753)
T 3jro_A 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH------------------------- 203 (753)
T ss_dssp EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC-------------------------
T ss_pred EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC-------------------------
Confidence 999999842 3667999999999999999876 222 23344
Q ss_pred CCCCCCCceeEEEeecCC---CCEEEEEEcCCcEEEEeCCCC
Q 001287 244 EHQPEEKEISALCWASSS---GSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 244 ~~~~~~~~Vtsl~w~spd---g~~l~sg~~dG~I~lWd~~~~ 282 (1107)
...|++++|. |+ |.+|++|+.||.|++||+.++
T Consensus 204 -----~~~V~~l~~s-p~~~~~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 204 -----SDWVRDVAWS-PTVLLRSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp -----SSCEEEEEEC-CCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred -----CCcEEEEEec-cCCCCCCEEEEEecCCEEEEecCCCC
Confidence 7789999986 99 899999999999999999754
No 118
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.92 E-value=2.3e-23 Score=243.10 Aligned_cols=156 Identities=11% Similarity=0.009 Sum_probs=119.2
Q ss_pred ccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeee-cCCCCC-eEEEEEEeCCCeEEEe---ccCceEEEEE
Q 001287 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEV-AGSRAP-VSTLSFCFINSSLAVG---NEFGLVYIYN 564 (1107)
Q Consensus 490 ~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l-~~h~~~-Vt~l~fspd~~~Lasg---~~dg~V~vw~ 564 (1107)
++++++++|++|+.||.|++||+..+... ..+ ..|... +.++.|+|++++|++| +.||.|++|+
T Consensus 183 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd 251 (402)
T 2aq5_A 183 DWSRDGALICTSCRDKRVRVIEPRKGTVV-----------AEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWD 251 (402)
T ss_dssp EECTTSSCEEEEETTSEEEEEETTTTEEE-----------EEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEE
T ss_pred EECCCCCEEEEEecCCcEEEEeCCCCcee-----------eeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEc
Confidence 56677789999999999999999987754 223 466655 8999999999999999 8999999999
Q ss_pred ecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEE-EEeCCCeEEEEEcCCCeE-EEEee
Q 001287 565 LNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLA-VGFECGRVAVLDMNLLSV-LFFTD 642 (1107)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la-~Gs~dg~V~iwd~~~~~~-~~~~~ 642 (1107)
+...... .......|...|++++|+|++++|+ +|+.||.|++||+.++.. +....
T Consensus 252 ~~~~~~~-----------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~ 308 (402)
T 2aq5_A 252 TKHLEEP-----------------------LSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLS 308 (402)
T ss_dssp TTBCSSC-----------------------SEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEE
T ss_pred CccccCC-----------------------ceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeec
Confidence 9775221 0111225778899999999999886 566899999999998773 32223
Q ss_pred cCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcce
Q 001287 643 DISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENM 704 (1107)
Q Consensus 643 ~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~ 704 (1107)
.+. |..+|.+++|++ ++.+++ +.|+.+.+|+..++.+
T Consensus 309 ~~~-~~~~v~~~~~sp----------------------~~~~~~--s~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 309 MFS-SKESQRGMGYMP----------------------KRGLEV--NKCEIARFYKLHERKC 345 (402)
T ss_dssp EEC-CSSCCSEEEECC----------------------GGGSCG--GGTEEEEEEEEETTEE
T ss_pred ccc-cCCcccceEEec----------------------ccccce--ecceeEEEEEcCCCcE
Confidence 322 779999999994 355554 5677999999877554
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.5e-22 Score=240.18 Aligned_cols=200 Identities=14% Similarity=0.111 Sum_probs=158.7
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcc---ee-eeC--------------------------------------
Q 001287 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIE---GL-LIS-------------------------------------- 73 (1107)
Q Consensus 36 ~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~---~~-~~~-------------------------------------- 73 (1107)
..+.+++|+|+|++|+++ .++.|++|+....+ .+ ...
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 468899999999977766 47899999975443 21 111
Q ss_pred ----------------CCCCCEEEEEEEeCCCEE-EEEeCCCcEEEEEcC--CCeeeeee---ccCCCeEEEEEecCCCE
Q 001287 74 ----------------PSQLPYKNLEFLQNQGFL-ISITNDNEIQVWSLE--SRSLACCL---KWESNITAFSVISGSHF 131 (1107)
Q Consensus 74 ----------------~h~~~V~~l~fs~d~~~L-~S~s~d~~I~vWDl~--s~~~~~~~---~~~~~Vt~l~~~~~~~~ 131 (1107)
+|.+.|.+++|+|++.+| ++++.|+.|+|||+. +++.+..+ .+...|++++|+|++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 344579999999999996 888899999999999 77776665 56789999999999999
Q ss_pred EEEEcCCCcEEEEEeecCCCceee-cceeecccccccccCCCCCCCCCeEEEEcccC-CCCCEEEEEECCCeEEEEEccC
Q 001287 132 MYIGDENGLMSVIKYDADEGKLFQ-LPYNISADALSEKAGFPLLSHQPVVGVLPHPN-SSGNRVLIAYENALVILWDVSE 209 (1107)
Q Consensus 132 l~~g~~dg~V~vw~~d~~~~~l~~-~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~-~~~~~ll~~~~dg~V~vwdl~~ 209 (1107)
|++|+.+|.|++|++... .... ....+.+|. ..|.+++|+|. ..+.+|++++.|+.|++||+.+
T Consensus 164 l~~~~~~g~v~~~~~~~~--~~~~~~~~~~~~h~------------~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~ 229 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSI--PEEKFTQEPILGHV------------SMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ 229 (450)
T ss_dssp EEEEETTSEEEEEETTSC--CCSSCCCCCSEECS------------SCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC
T ss_pred EEEEeCCCcEEEEecCCc--ccccccceeeeccc------------CceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC
Confidence 999999999988887542 2211 111244444 78999999993 1277899999999999999998
Q ss_pred CEEEEE--eCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 210 AQIIFV--GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 210 ~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
++.+.. .+| ...|++++|. +|.+|++|+.||.|++||+.++
T Consensus 230 ~~~~~~~~~~h------------------------------~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~~ 272 (450)
T 2vdu_B 230 CFIVDKWLFGH------------------------------KHFVSSICCG--KDYLLLSAGGDDKIFAWDWKTG 272 (450)
T ss_dssp TTCEEEECCCC------------------------------SSCEEEEEEC--STTEEEEEESSSEEEEEETTTC
T ss_pred CceeeeeecCC------------------------------CCceEEEEEC--CCCEEEEEeCCCeEEEEECCCC
Confidence 765433 345 7789999984 9999999999999999999765
No 120
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.91 E-value=1.1e-21 Score=227.64 Aligned_cols=185 Identities=11% Similarity=0.125 Sum_probs=147.0
Q ss_pred CCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEE-EEEeCCCcEEEEEcCCCeeeeeeccCCCeEEEEE
Q 001287 47 QRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFL-ISITNDNEIQVWSLESRSLACCLKWESNITAFSV 125 (1107)
Q Consensus 47 ~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L-~S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~ 125 (1107)
+.++++++.|+.|++|+....+.+....+...+.+++|+|++.+| ++++.|+.|++||+.+++.+..+.....+.+++|
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~ 81 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAV 81 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEE
Confidence 357888999999999999877766555555669999999999987 5666899999999999999988887779999999
Q ss_pred ecCCCEEEEE-cCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEE-EEEECCCeEE
Q 001287 126 ISGSHFMYIG-DENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV-LIAYENALVI 203 (1107)
Q Consensus 126 ~~~~~~l~~g-~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~l-l~~~~dg~V~ 203 (1107)
+|++++|+++ ..++.|++|++.. ++.... +..+ ..+.+++|+| +++++ ++++.++.|.
T Consensus 82 spdg~~l~~~~~~~~~v~v~d~~~--~~~~~~---~~~~-------------~~~~~~~~s~--dg~~l~~~~~~~~~v~ 141 (391)
T 1l0q_A 82 SPDGKQVYVTNMASSTLSVIDTTS--NTVAGT---VKTG-------------KSPLGLALSP--DGKKLYVTNNGDKTVS 141 (391)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTT--TEEEEE---EECS-------------SSEEEEEECT--TSSEEEEEETTTTEEE
T ss_pred CCCCCEEEEEECCCCEEEEEECCC--CeEEEE---EeCC-------------CCcceEEECC--CCCEEEEEeCCCCEEE
Confidence 9999988655 4679999998764 444432 3222 4589999988 67766 6777799999
Q ss_pred EEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEE-EEEEcCCcEEEEeCCCC
Q 001287 204 LWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL-AVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 204 vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l-~sg~~dG~I~lWd~~~~ 282 (1107)
+||+.+++....... ...+.+++|. |+|++| ++++.+|.|++||+.++
T Consensus 142 ~~d~~~~~~~~~~~~------------------------------~~~~~~~~~~-~dg~~l~~~~~~~~~v~~~d~~~~ 190 (391)
T 1l0q_A 142 VINTVTKAVINTVSV------------------------------GRSPKGIAVT-PDGTKVYVANFDSMSISVIDTVTN 190 (391)
T ss_dssp EEETTTTEEEEEEEC------------------------------CSSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTT
T ss_pred EEECCCCcEEEEEec------------------------------CCCcceEEEC-CCCCEEEEEeCCCCEEEEEECCCC
Confidence 999999887665433 3456888985 999887 57778999999998643
No 121
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.91 E-value=1e-22 Score=236.81 Aligned_cols=115 Identities=12% Similarity=0.061 Sum_probs=87.9
Q ss_pred EecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccC------CCCCEEEEEEC
Q 001287 125 VISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN------SSGNRVLIAYE 198 (1107)
Q Consensus 125 ~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~------~~~~~ll~~~~ 198 (1107)
+.+++.+|++|+.|++|++|+.+.......+..-.+.+|. +.|.+|+|+|. .++++|++++.
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~------------~~v~~v~~~p~~~~~~~~d~~~las~s~ 164 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHH------------NFVNDIDIADVYSADNRLAEQVIASVGD 164 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCS------------SCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCC------------CceEEEEEccccccccCCCCCEEEEEEC
Confidence 3445568999999999999998853211111111244555 89999999872 25778999999
Q ss_pred CCeEEEEEccCCE-EEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCC-CEEEEEEcCCcEEE
Q 001287 199 NALVILWDVSEAQ-IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG-SILAVGYIDGDILL 276 (1107)
Q Consensus 199 dg~V~vwdl~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg-~~l~sg~~dG~I~l 276 (1107)
|++|+|||+.++. +....+| ...|.+++|. |++ .+|++|+.||+|++
T Consensus 165 D~tv~~Wd~~~~~~~~~~~~~------------------------------~~~v~~v~~~-p~~~~~l~~~~~d~~v~~ 213 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPILAGYPL------------------------------SSPGISVQFR-PSNPNQLIVGERNGNIRI 213 (393)
T ss_dssp TSEEEEEEEETTEEEEEEEEC------------------------------SSCEEEEEEE-TTEEEEEEEEETTSEEEE
T ss_pred CCeEEEEECCCCceeeeecCC------------------------------CCCcEEEEEC-CCCCceEEecCCCCEEEE
Confidence 9999999998765 4556666 6789999997 877 47999999999999
Q ss_pred EeCCCC
Q 001287 277 WNTSTT 282 (1107)
Q Consensus 277 Wd~~~~ 282 (1107)
||+.++
T Consensus 214 wd~~t~ 219 (393)
T 4gq1_A 214 FDWTLN 219 (393)
T ss_dssp EETTCC
T ss_pred EECCCC
Confidence 999865
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.91 E-value=3.1e-21 Score=223.70 Aligned_cols=329 Identities=15% Similarity=0.075 Sum_probs=225.4
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEE-EEEcCCCcEEEEEeecCCCceeecceeeccccccc
Q 001287 89 GFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFM-YIGDENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1107)
Q Consensus 89 ~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l-~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~ 167 (1107)
..+++++.|+.|++||+.+++++..+.....+.+++|+|+++++ ++++.++.|++|++.. +++... +..+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~--~~~~~~---~~~~---- 73 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT--NNVIAT---VPAG---- 73 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTT--TEEEEE---EECS----
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCC--CeEEEE---EECC----
Confidence 35778888999999999999999888777789999999999987 5667899999998753 455432 3321
Q ss_pred ccCCCCCCCCCeEEEEcccCCCCCEEEEEE-CCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCC
Q 001287 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQ 246 (1107)
Q Consensus 168 ~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~-~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1107)
..+.+++|+| ++++|+++. .++.|++||+.+++......+
T Consensus 74 ---------~~v~~~~~sp--dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~---------------------------- 114 (391)
T 1l0q_A 74 ---------SSPQGVAVSP--DGKQVYVTNMASSTLSVIDTTSNTVAGTVKT---------------------------- 114 (391)
T ss_dssp ---------SSEEEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEEEEEC----------------------------
T ss_pred ---------CCccceEECC--CCCEEEEEECCCCEEEEEECCCCeEEEEEeC----------------------------
Confidence 4699999988 677675554 669999999999988765543
Q ss_pred CCCCceeEEEeecCCCCEE-EEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCC
Q 001287 247 PEEKEISALCWASSSGSIL-AVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNI 325 (1107)
Q Consensus 247 ~~~~~Vtsl~w~spdg~~l-~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~ 325 (1107)
...+.+++|. |+|+.| ++++.++.|++||+.+++. +.
T Consensus 115 --~~~~~~~~~s-~dg~~l~~~~~~~~~v~~~d~~~~~~-----------~~---------------------------- 152 (391)
T 1l0q_A 115 --GKSPLGLALS-PDGKKLYVTNNGDKTVSVINTVTKAV-----------IN---------------------------- 152 (391)
T ss_dssp --SSSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTEE-----------EE----------------------------
T ss_pred --CCCcceEEEC-CCCCEEEEEeCCCCEEEEEECCCCcE-----------EE----------------------------
Confidence 4467899985 999987 6788899999999864310 00
Q ss_pred CceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEec
Q 001287 326 DGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDN 405 (1107)
Q Consensus 326 d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~ 405 (1107)
.+.. ...+
T Consensus 153 -------------------~~~~-------------------~~~~---------------------------------- 160 (391)
T 1l0q_A 153 -------------------TVSV-------------------GRSP---------------------------------- 160 (391)
T ss_dssp -------------------EEEC-------------------CSSE----------------------------------
T ss_pred -------------------EEec-------------------CCCc----------------------------------
Confidence 0000 0000
Q ss_pred cceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCC
Q 001287 406 ASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSP 485 (1107)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~ 485 (1107)
T Consensus 161 -------------------------------------------------------------------------------- 160 (391)
T 1l0q_A 161 -------------------------------------------------------------------------------- 160 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCCCcEE-EEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEec---cCceEE
Q 001287 486 VPITKCHSVDRVY-LAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGN---EFGLVY 561 (1107)
Q Consensus 486 ~~~~~~s~~~~~l-aTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~---~dg~V~ 561 (1107)
..++++++++.+ ++++.|++|++||+.++.+... + .+...+.+++|+|++++|++++ .++.|+
T Consensus 161 -~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~-----------~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~ 227 (391)
T 1l0q_A 161 -KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT-----------V-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVS 227 (391)
T ss_dssp -EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE-----------E-ECSSEEEEEEECTTSSEEEEEEECSSCCEEE
T ss_pred -ceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEE-----------E-ecCCCccceEECCCCCEEEEEecCcCCCcEE
Confidence 011344555544 7888999999999988765411 1 2345789999999999999888 689999
Q ss_pred EEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEE-EEEeCCCeEEEEEcCCCeEEEE
Q 001287 562 IYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKL-AVGFECGRVAVLDMNLLSVLFF 640 (1107)
Q Consensus 562 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~l-a~Gs~dg~V~iwd~~~~~~~~~ 640 (1107)
+|++... +++..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++++..
T Consensus 228 ~~d~~~~-------------------------~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~ 281 (391)
T 1l0q_A 228 MIDTGTN-------------------------KITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITAT 281 (391)
T ss_dssp EEETTTT-------------------------EEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEECCCC-------------------------eEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEE
Confidence 9998764 2344454544 58999999999877 6778999999999999988744
Q ss_pred eecCCCCCCceEE---EEEeecccCcc-ccCCCCCCCCCCCCCC--CccEEEEEcCCceEEEEeCCCcce
Q 001287 641 TDDISGSSSPIIS---MTWTEFKNTHS-LAKNPNHSEREVPVNP--AEEVIIVLFKDAKISIVGGSSENM 704 (1107)
Q Consensus 641 ~~~~~~h~~~V~~---l~fs~~~~~~~-~~~~p~~~~~~~~~~~--~~~~L~s~s~Dg~v~v~d~~~g~~ 704 (1107)
.. .|..+... +.+.+...... ....... .....| +...+...+.|..+.+||..+|..
T Consensus 282 ~~---~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~---~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 282 MA---VGKNPYASGQFIGSIPVQPVYPSADFKSNI---TSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp EE---CSSSEECCSSCEEECSSCCCCCBCCEEESC---CSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred EE---CCcCCCccceeeeccccccccccccccccc---ccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 33 34444321 22221100000 0000000 000001 113466677788999999887764
No 123
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.6e-22 Score=255.36 Aligned_cols=121 Identities=13% Similarity=0.178 Sum_probs=101.2
Q ss_pred ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEE
Q 001287 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1107)
Q Consensus 115 ~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll 194 (1107)
.|.+.|++++|+|++++|++|+.||.|+||++...++... ..+.+|. .+|.+++|+|..++.+|+
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~---~~l~~h~------------~~V~~l~~s~~~~~~~l~ 71 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLI---DTLTGHE------------GPVWRVDWAHPKFGTILA 71 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEE---EEECCCS------------SCEEEEEECCTTSCSEEE
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccc---eeccCCc------------CceEEEEecCCCCCCEEE
Confidence 6889999999999999999999999999999985434443 3366665 889999998855588999
Q ss_pred EEECCCeEEEEEccCCEE---EEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCC--CCEEEEEE
Q 001287 195 IAYENALVILWDVSEAQI---IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS--GSILAVGY 269 (1107)
Q Consensus 195 ~~~~dg~V~vwdl~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spd--g~~l~sg~ 269 (1107)
+++.||.|++||+.+++. ....+| ...|++++|. |+ |..|++|+
T Consensus 72 s~s~Dg~I~vwd~~~~~~~~~~~~~~h------------------------------~~~V~~v~~s-p~~~~~~l~sgs 120 (753)
T 3jro_A 72 SCSYDGKVLIWKEENGRWSQIAVHAVH------------------------------SASVNSVQWA-PHEYGPLLLVAS 120 (753)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCC------------------------------SSCEEEEEEC-CGGGCSEEEEEE
T ss_pred EEeCCCeEEEEECCCCcccccccccCC------------------------------CCCeEEEEEC-CCCCCCEEEEEe
Confidence 999999999999999863 333444 7789999986 88 99999999
Q ss_pred cCCcEEEEeCCC
Q 001287 270 IDGDILLWNTST 281 (1107)
Q Consensus 270 ~dG~I~lWd~~~ 281 (1107)
.||.|++||+.+
T Consensus 121 ~dg~I~vwdl~~ 132 (753)
T 3jro_A 121 SDGKVSVVEFKE 132 (753)
T ss_dssp TTSEEEEEECCS
T ss_pred CCCcEEEEEeec
Confidence 999999999864
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.3e-22 Score=231.21 Aligned_cols=159 Identities=9% Similarity=0.069 Sum_probs=116.4
Q ss_pred EEeCCCEEEEEeCCCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeeccc
Q 001287 84 FLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISAD 163 (1107)
Q Consensus 84 fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~ 163 (1107)
+.+++.+|++++.|+.|++||+.+++.+..+. ...|.++.++|. +++|+.|++|++|+.+. .+. .|.+...
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~---~~~--~~~~~~~ 114 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT-TPNPRTGGEHPA---IISRGPCNRLLLLYPGN---QIT--ILDSKTN 114 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-EECCCTTCCCCS---EEEECSTTEEEEEETTT---EEE--EEETTTC
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-cCCceeeeeCCc---eEEecCCCeEEEEEccC---ceE--EeecCCc
Confidence 34577899999999999999999998877765 456777788887 99999999999998652 111 0111110
Q ss_pred ccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCC
Q 001287 164 ALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGIS 243 (1107)
Q Consensus 164 ~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (1107)
..... ....+...|.+++|+|..++.++++++.||.|++||+.+++.......
T Consensus 115 ~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~------------------------- 167 (343)
T 3lrv_A 115 KVLRE--IEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA------------------------- 167 (343)
T ss_dssp CEEEE--EECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC-------------------------
T ss_pred ceeEE--eecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec-------------------------
Confidence 00000 001122679999999854678899999999999999999887554311
Q ss_pred CCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 244 EHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 244 ~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
.....|++++|. |+|.+|++|+.||.|++||+.++
T Consensus 168 ---~~~~~i~~~~~~-pdg~~lasg~~dg~i~iwd~~~~ 202 (343)
T 3lrv_A 168 ---KSDVEYSSGVLH-KDSLLLALYSPDGILDVYNLSSP 202 (343)
T ss_dssp ---CSSCCCCEEEEC-TTSCEEEEECTTSCEEEEESSCT
T ss_pred ---CCCCceEEEEEC-CCCCEEEEEcCCCEEEEEECCCC
Confidence 004469999986 99999999999999999999754
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.89 E-value=1.5e-20 Score=221.14 Aligned_cols=355 Identities=11% Similarity=0.076 Sum_probs=236.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEEC-CCcEEEEeCCCcceeeeCCCCCCEEEEE---EEeCCCEEEEEe--------------
Q 001287 34 IPATASILAFDHIQRLLAIATL-DGRIKVIGGDGIEGLLISPSQLPYKNLE---FLQNQGFLISIT-------------- 95 (1107)
Q Consensus 34 ~~~~i~~lafsp~~~~LA~Gs~-dg~I~iw~~~~~~~~~~~~h~~~V~~l~---fs~d~~~L~S~s-------------- 95 (1107)
-...|..+.|+|....++.... ....+++.. .....+..++ |++++..++.++
T Consensus 26 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~---------~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (433)
T 3bws_A 26 NGTEIVKFSIHPYKGTVIRLGEEILPFKVLEM---------DKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKP 96 (433)
T ss_dssp -CEEEEEEEEECCTTCEEEETTEECCEEEEEE---------ETTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSG
T ss_pred CCcEEEEEecccccCceEEcCceecceeeeec---------ccCCccEEEEEeeccCCCcEEEEEEccccCcceeeeccc
Confidence 3445777888887554443321 111222221 2233445555 666555444332
Q ss_pred CCCcEEEEE--cCCC--eeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecc-e-eeccccccccc
Q 001287 96 NDNEIQVWS--LESR--SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLP-Y-NISADALSEKA 169 (1107)
Q Consensus 96 ~d~~I~vWD--l~s~--~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~-~-~i~~~~~~~~~ 169 (1107)
.++.+.||. ..++ +.+..+.....+.+++|+|++.++++++.++.|++|+++. ++..... . .+.+|.
T Consensus 97 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~----- 169 (433)
T 3bws_A 97 EELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINS--GQTVRLSPPEKYKKKL----- 169 (433)
T ss_dssp GGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTT--CCEEEECCCHHHHTTC-----
T ss_pred CCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCC--CeEeeecCcccccccC-----
Confidence 334334554 4435 5556666667788999999777788888899999998764 4444310 0 122232
Q ss_pred CCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEe-CCccccccccccCCCCCCCCccccCCCCCCCC
Q 001287 170 GFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPE 248 (1107)
Q Consensus 170 ~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1107)
..|.+++|+| ++.++++++.|+.|++||+.+++..... .|
T Consensus 170 -------~~v~~~~~~~--~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~------------------------------ 210 (433)
T 3bws_A 170 -------GFVETISIPE--HNELWVSQMQANAVHVFDLKTLAYKATVDLT------------------------------ 210 (433)
T ss_dssp -------CEEEEEEEGG--GTEEEEEEGGGTEEEEEETTTCCEEEEEECS------------------------------
T ss_pred -------CceeEEEEcC--CCEEEEEECCCCEEEEEECCCceEEEEEcCC------------------------------
Confidence 6799999977 6778889999999999999987765433 33
Q ss_pred CCceeEEEeecCCCCEEEEE-EcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCc
Q 001287 249 EKEISALCWASSSGSILAVG-YIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDG 327 (1107)
Q Consensus 249 ~~~Vtsl~w~spdg~~l~sg-~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~ 327 (1107)
...+.+++|. |+++.++++ +.||.|++||+.+++. +..+.
T Consensus 211 ~~~~~~~~~~-~~~~~l~~~~~~~~~i~~~d~~~~~~-----------~~~~~--------------------------- 251 (433)
T 3bws_A 211 GKWSKILLYD-PIRDLVYCSNWISEDISVIDRKTKLE-----------IRKTD--------------------------- 251 (433)
T ss_dssp SSSEEEEEEE-TTTTEEEEEETTTTEEEEEETTTTEE-----------EEECC---------------------------
T ss_pred CCCeeEEEEc-CCCCEEEEEecCCCcEEEEECCCCcE-----------EEEec---------------------------
Confidence 5678999986 999988554 4799999999864410 00000
Q ss_pred eEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccc
Q 001287 328 RLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNAS 407 (1107)
Q Consensus 328 ~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~ 407 (1107)
....+.
T Consensus 252 ---------------------------------------~~~~~~----------------------------------- 257 (433)
T 3bws_A 252 ---------------------------------------KIGLPR----------------------------------- 257 (433)
T ss_dssp ---------------------------------------CCSEEE-----------------------------------
T ss_pred ---------------------------------------CCCCce-----------------------------------
Confidence 000000
Q ss_pred eeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCC
Q 001287 408 LTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVP 487 (1107)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~ 487 (1107)
T Consensus 258 -------------------------------------------------------------------------------- 257 (433)
T 3bws_A 258 -------------------------------------------------------------------------------- 257 (433)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCcEEEEEe--------cCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeE-EEeccCc
Q 001287 488 ITKCHSVDRVYLAGY--------HDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSL-AVGNEFG 558 (1107)
Q Consensus 488 ~~~~s~~~~~laTgs--------~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~L-asg~~dg 558 (1107)
.++++|+++.+++++ .||.|++||+.++.+... ..|...+.+++|+|+++.| ++++.++
T Consensus 258 ~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~------------~~~~~~~~~~~~~~~g~~l~~~~~~~~ 325 (433)
T 3bws_A 258 GLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT------------IGPPGNKRHIVSGNTENKIYVSDMCCS 325 (433)
T ss_dssp EEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE------------EEEEECEEEEEECSSTTEEEEEETTTT
T ss_pred EEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee------------ccCCCCcceEEECCCCCEEEEEecCCC
Confidence 113445555555554 588999999988764421 1233478899999999754 6668899
Q ss_pred eEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeC---------------
Q 001287 559 LVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFE--------------- 623 (1107)
Q Consensus 559 ~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~--------------- 623 (1107)
.|++|++... .+...+ .+...+.+++|+|++++|++++.
T Consensus 326 ~v~v~d~~~~-------------------------~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~ 379 (433)
T 3bws_A 326 KIEVYDLKEK-------------------------KVQKSI-PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLV 379 (433)
T ss_dssp EEEEEETTTT-------------------------EEEEEE-ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSS
T ss_pred EEEEEECCCC-------------------------cEEEEe-cCCCCCCeEEEcCCCCEEEEEecCCCcccccccccccc
Confidence 9999999864 123333 47788999999999999988876
Q ss_pred CCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcC-CceEEEEeCC
Q 001287 624 CGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFK-DAKISIVGGS 700 (1107)
Q Consensus 624 dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~-Dg~v~v~d~~ 700 (1107)
||.|++||+.+++.+.... +...+.+++|+ |++.+|++++. |+.|.+||.+
T Consensus 380 dg~v~~~d~~~~~~~~~~~----~~~~~~~~~~s----------------------~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 380 LGKVYVIDTTTDTVKEFWE----AGNQPTGLDVS----------------------PDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp CCEEEEEETTTTEEEEEEE----CSSSEEEEEEC----------------------TTSCEEEEEETTTTEEEEEEET
T ss_pred ceEEEEEECCCCcEEEEec----CCCCCceEEEc----------------------CCCCEEEEEECCCCeEEEEEec
Confidence 5799999999998874433 24578999998 56778887765 9999999975
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.89 E-value=4.2e-21 Score=232.03 Aligned_cols=204 Identities=11% Similarity=0.131 Sum_probs=149.1
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEc--CCCeeeeeeccC
Q 001287 40 ILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL--ESRSLACCLKWE 117 (1107)
Q Consensus 40 ~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl--~s~~~~~~~~~~ 117 (1107)
+.+|+|++.++++++.|+.|.+||....+++........+..++|+||+++|++++.|+.|.+||+ .+++++..+...
T Consensus 142 ~~~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g 221 (543)
T 1nir_A 142 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG 221 (543)
T ss_dssp CSCCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC
T ss_pred ccccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecC
Confidence 345899999999999999999999977665533221122899999999999999999999999999 888888888777
Q ss_pred CCeEEEEEec----CCCEEEEEcC-CCcEEEEEeecCCCceeecceeecccccccccCCCCCC-CCCeEEEEcccCCCCC
Q 001287 118 SNITAFSVIS----GSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLS-HQPVVGVLPHPNSSGN 191 (1107)
Q Consensus 118 ~~Vt~l~~~~----~~~~l~~g~~-dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~-~~~V~~v~f~P~~~~~ 191 (1107)
..+..++|+| +++++++++. +++|.||+.. ++++.+. ++.+.. .......+ ...+.++.++|. .+.
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~--t~~~~~~---i~~~g~--~~~~~~~~~~~~v~~i~~s~~-~~~ 293 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE--TLEPKQI---VSTRGM--TVDTQTYHPEPRVAAIIASHE-HPE 293 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT--TCCEEEE---EECCEE--CSSSCCEESCCCEEEEEECSS-SSE
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc--cccccee---ecccCc--ccCccccccCCceEEEEECCC-CCE
Confidence 7899999999 9999999985 8999999865 3455432 332110 00000001 136899999884 344
Q ss_pred EEEEEECCCeEEEEEccCCEEEE--EeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEE
Q 001287 192 RVLIAYENALVILWDVSEAQIIF--VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1107)
Q Consensus 192 ~ll~~~~dg~V~vwdl~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~ 269 (1107)
.+++...++.|.+||+.+.+... ...+ ...+..+.|. |+|++++++.
T Consensus 294 ~~vs~~~~g~i~vvd~~~~~~l~~~~i~~------------------------------~~~~~~~~~s-pdg~~l~va~ 342 (543)
T 1nir_A 294 FIVNVKETGKVLLVNYKDIDNLTVTSIGA------------------------------APFLHDGGWD-SSHRYFMTAA 342 (543)
T ss_dssp EEEEETTTTEEEEEECTTSSSCEEEEEEC------------------------------CSSCCCEEEC-TTSCEEEEEE
T ss_pred EEEEECCCCeEEEEEecCCCcceeEEecc------------------------------CcCccCceEC-CCCCEEEEEe
Confidence 46667788999999998754322 2222 3345667875 9999877665
Q ss_pred -cCCcEEEEeCCCC
Q 001287 270 -IDGDILLWNTSTT 282 (1107)
Q Consensus 270 -~dG~I~lWd~~~~ 282 (1107)
.+++|.+||..++
T Consensus 343 ~~~~~v~v~D~~tg 356 (543)
T 1nir_A 343 NNSNKVAVIDSKDR 356 (543)
T ss_dssp GGGTEEEEEETTTT
T ss_pred cCCCeEEEEECCCC
Confidence 5899999999754
No 127
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.88 E-value=4.4e-22 Score=226.89 Aligned_cols=187 Identities=10% Similarity=0.088 Sum_probs=146.4
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcC---------CCeeee
Q 001287 42 AFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE---------SRSLAC 112 (1107)
Q Consensus 42 afsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~---------s~~~~~ 112 (1107)
.+.+++.+||+|+.||.|+||+....+.+.... ..+|.++.|+|+ +++++.|++|++|+.. +++.+.
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~ 118 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT-TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLR 118 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence 344678999999999999999996554432222 567888889988 9999999999999765 555444
Q ss_pred ee--ccCCCeEEEEEec--CCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCC
Q 001287 113 CL--KWESNITAFSVIS--GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1107)
Q Consensus 113 ~~--~~~~~Vt~l~~~~--~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1107)
.+ .|.+.|++++++| +++++++|+.||.|++|++.. ++.... ...+. ...|.+++|+|
T Consensus 119 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~--~~~~~~---~~~~~-----------~~~i~~~~~~p-- 180 (343)
T 3lrv_A 119 EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYED--DSQYIV---HSAKS-----------DVEYSSGVLHK-- 180 (343)
T ss_dssp EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSS--SCEEEE---ECCCS-----------SCCCCEEEECT--
T ss_pred EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCC--CcEEEE---EecCC-----------CCceEEEEECC--
Confidence 44 4557899999999 999999999999999999875 333321 21111 15699999998
Q ss_pred CCCEEEEEECCCeEEEEEccCCEEE--EEeC-CccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEE
Q 001287 189 SGNRVLIAYENALVILWDVSEAQII--FVGG-GKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 265 (1107)
Q Consensus 189 ~~~~ll~~~~dg~V~vwdl~~~~~~--~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l 265 (1107)
++.+|++|+.||.|++||+.+++.. .+.+ | ...|++++|. |+|.+|
T Consensus 181 dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h------------------------------~~~v~~l~fs-~~g~~l 229 (343)
T 3lrv_A 181 DSLLLALYSPDGILDVYNLSSPDQASSRFPVDE------------------------------EAKIKEVKFA-DNGYWM 229 (343)
T ss_dssp TSCEEEEECTTSCEEEEESSCTTSCCEECCCCT------------------------------TSCEEEEEEC-TTSSEE
T ss_pred CCCEEEEEcCCCEEEEEECCCCCCCccEEeccC------------------------------CCCEEEEEEe-CCCCEE
Confidence 7888999999999999999987654 3333 4 7789999985 999999
Q ss_pred EEEEcCCcEEEEeCCCC
Q 001287 266 AVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 266 ~sg~~dG~I~lWd~~~~ 282 (1107)
++++ |+.|++||+.+.
T Consensus 230 ~s~~-~~~v~iwd~~~~ 245 (343)
T 3lrv_A 230 VVEC-DQTVVCFDLRKD 245 (343)
T ss_dssp EEEE-SSBEEEEETTSS
T ss_pred EEEe-CCeEEEEEcCCC
Confidence 9999 559999999754
No 128
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.88 E-value=1.2e-20 Score=207.42 Aligned_cols=143 Identities=13% Similarity=0.108 Sum_probs=107.8
Q ss_pred CCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCC---CCCeEEEEEEeCCCeE------------EEeccCc
Q 001287 494 VDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGS---RAPVSTLSFCFINSSL------------AVGNEFG 558 (1107)
Q Consensus 494 ~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h---~~~Vt~l~fspd~~~L------------asg~~dg 558 (1107)
++.+|++|+.|++|||||+.++.+. ..+.+| ...|.+++|+|++.++ ++|+.|+
T Consensus 192 ~~~~LaSgS~D~TIkIWDl~TGk~l-----------~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~ 260 (356)
T 2w18_A 192 MQEALLGTTIMNNIVIWNLKTGQLL-----------KKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVF 260 (356)
T ss_dssp STTEEEEEETTSEEEEEETTTCCEE-----------EEEECCC---CCCEEEEEEETTEEEEEEC------------CCE
T ss_pred CCceEEEecCCCcEEEEECCCCcEE-----------EEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCc
Confidence 5569999999999999999998865 223332 3478889999999886 5688899
Q ss_pred eEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEE-----eecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 001287 559 LVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVF-----SLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN 633 (1107)
Q Consensus 559 ~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~ 633 (1107)
+|++|+..+. .++..+ .+|...+.+..++ +.++|+|+.||+|+|||+.
T Consensus 261 tIklWd~~tg-------------------------k~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~ 313 (356)
T 2w18_A 261 QLIVINPKTT-------------------------LSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLL 313 (356)
T ss_dssp EEEEEETTTT-------------------------EEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred EEEEEECCCC-------------------------EEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECC
Confidence 9999998765 122222 2455555544444 7899999999999999999
Q ss_pred CCeEEEEeecCCCCCCceE-EEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeC
Q 001287 634 LLSVLFFTDDISGSSSPII-SMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1107)
Q Consensus 634 ~~~~~~~~~~~~~h~~~V~-~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~ 699 (1107)
+++++ +.+.+|...|. .++|+ |++.+|++|+.|++|+|||.
T Consensus 314 tGk~l---~tL~gH~~~vvs~vafS----------------------PDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 314 LGQCT---ALLPPVSDQHWSFVKWS----------------------GTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TCSEE---EEECCC--CCCCEEEEC----------------------SSSSEEEEECTTSCEEEEEE
T ss_pred CCcEE---EEecCCCCCeEEEEEEC----------------------CCCCEEEEEECCCcEEEecC
Confidence 99988 46677887665 58999 67899999999999999994
No 129
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.88 E-value=1.8e-20 Score=205.92 Aligned_cols=103 Identities=12% Similarity=0.067 Sum_probs=74.9
Q ss_pred EEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCcccee
Q 001287 497 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLF 576 (1107)
Q Consensus 497 ~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~ 576 (1107)
.+++|+.|++|++||..++.+...+.+. . ..+|...+.+.++ ++.++++++.||+|+|||+...
T Consensus 252 ~laSGs~D~tIklWd~~tgk~l~v~~~~-----~-p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tG-------- 315 (356)
T 2w18_A 252 SESLRSPVFQLIVINPKTTLSVGVMLYC-----L-PPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLG-------- 315 (356)
T ss_dssp ------CCEEEEEEETTTTEEEEEEEEC-----C-CTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTC--------
T ss_pred eeeccCCCcEEEEEECCCCEEEEEEEee-----c-cCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCC--------
Confidence 5789999999999999988755222111 0 2466655544444 4889999999999999999886
Q ss_pred eccCcCcceecccCCcceeEEEEeecCcCEE-EEEEcCCCCEEEEEeCCCeEEEEEc
Q 001287 577 VLETKSEVHALPEGKISLCRAVFSLVNSPVR-ALQFTSSGAKLAVGFECGRVAVLDM 632 (1107)
Q Consensus 577 ~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt-~la~sp~~~~la~Gs~dg~V~iwd~ 632 (1107)
+++.++.+|...+. +++|||||++||+|+.|++|+|||+
T Consensus 316 -----------------k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 316 -----------------QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp -----------------SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred -----------------cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 46788888877655 6999999999999999999999996
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.88 E-value=1.9e-20 Score=226.20 Aligned_cols=351 Identities=9% Similarity=0.053 Sum_probs=242.4
Q ss_pred EEeCCCEEEEEeCCCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeeccc
Q 001287 84 FLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISAD 163 (1107)
Q Consensus 84 fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~ 163 (1107)
|+|++.++++.+.|++|.+||..+++++..+.....+.+++|+|++++|++++.++.|++|+++..++++.. .++..
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~---~i~~g 221 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA---EIKIG 221 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEE---EEECC
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEE---EEecC
Confidence 889888889999999999999999999888864444899999999999999999999999998433345443 24321
Q ss_pred ccccccCCCCCCCCCeEEEEcccC--CCCCEEEEEE-CCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCcccc
Q 001287 164 ALSEKAGFPLLSHQPVVGVLPHPN--SSGNRVLIAY-ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLE 240 (1107)
Q Consensus 164 ~~~~~~~~~~~~~~~V~~v~f~P~--~~~~~ll~~~-~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 240 (1107)
..+.+++|+|. .++++++++. .++.|.+||..+.+++..........
T Consensus 222 -------------~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~----------------- 271 (543)
T 1nir_A 222 -------------IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV----------------- 271 (543)
T ss_dssp -------------SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECS-----------------
T ss_pred -------------CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCccc-----------------
Confidence 45899999771 1477787776 58999999999988765432100000
Q ss_pred CCCCCCC-CCCceeEEEeecCCCC-EEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecc
Q 001287 241 GISEHQP-EEKEISALCWASSSGS-ILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTN 318 (1107)
Q Consensus 241 ~~~~~~~-~~~~Vtsl~w~spdg~-~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~ 318 (1107)
..... ....+.++.+. |++. ++++...+|.|.+||+.+.... . +.
T Consensus 272 --~~~~~~~~~~v~~i~~s-~~~~~~~vs~~~~g~i~vvd~~~~~~l-----------~------------~~------- 318 (543)
T 1nir_A 272 --DTQTYHPEPRVAAIIAS-HEHPEFIVNVKETGKVLLVNYKDIDNL-----------T------------VT------- 318 (543)
T ss_dssp --SSCCEESCCCEEEEEEC-SSSSEEEEEETTTTEEEEEECTTSSSC-----------E------------EE-------
T ss_pred --CccccccCCceEEEEEC-CCCCEEEEEECCCCeEEEEEecCCCcc-----------e------------eE-------
Confidence 00000 03368888864 7665 5566778899999998653100 0 00
Q ss_pred cccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCC
Q 001287 319 KESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPG 398 (1107)
Q Consensus 319 ~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G 398 (1107)
.+. ....
T Consensus 319 --------------------------~i~-------------------~~~~---------------------------- 325 (543)
T 1nir_A 319 --------------------------SIG-------------------AAPF---------------------------- 325 (543)
T ss_dssp --------------------------EEE-------------------CCSS----------------------------
T ss_pred --------------------------Eec-------------------cCcC----------------------------
Confidence 000 0000
Q ss_pred eEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccc
Q 001287 399 QLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPL 478 (1107)
Q Consensus 399 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~ 478 (1107)
|
T Consensus 326 ------------------------------------------------------------------------------~- 326 (543)
T 1nir_A 326 ------------------------------------------------------------------------------L- 326 (543)
T ss_dssp ------------------------------------------------------------------------------C-
T ss_pred ------------------------------------------------------------------------------c-
Confidence 0
Q ss_pred cCCCCCCCCccccCCCCcEEE-EEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeC-CCeEEEec-
Q 001287 479 SGGVPSPVPITKCHSVDRVYL-AGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFI-NSSLAVGN- 555 (1107)
Q Consensus 479 ~gg~~~~~~~~~~s~~~~~la-Tgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd-~~~Lasg~- 555 (1107)
..++++|++++++ ++..+++|++||+.++.+...... ....|......+ ++|+ +..++++.
T Consensus 327 --------~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~-------g~~ph~g~g~~~-~~p~~g~~~~s~~~ 390 (543)
T 1nir_A 327 --------HDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV-------GKTPHPGRGANF-VHPKYGPVWSTSHL 390 (543)
T ss_dssp --------CCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC-------SSSBCCTTCEEE-EETTTEEEEEEEBS
T ss_pred --------cCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeecc-------CCCCCCCCCccc-CCCCCccEEEeccC
Confidence 0115677777554 556789999999999886532211 011354444343 5777 56667765
Q ss_pred cCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEe-------CCCeEE
Q 001287 556 EFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGF-------ECGRVA 628 (1107)
Q Consensus 556 ~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs-------~dg~V~ 628 (1107)
.|++|.||+....... ...++++.++..|.+.+..++|+|++++|++++ .+++|.
T Consensus 391 ~d~~V~v~d~~~~~~~------------------~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~ 452 (543)
T 1nir_A 391 GDGSISLIGTDPKNHP------------------QYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVA 452 (543)
T ss_dssp SSSEEEEEECCTTTCT------------------TTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEE
T ss_pred CCceEEEEEeCCCCCc------------------hhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEE
Confidence 5899999999873210 112357888889999999999999999999998 277999
Q ss_pred EEEcCCCeEEEEeec------CCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEE-----cCCceEEEE
Q 001287 629 VLDMNLLSVLFFTDD------ISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVL-----FKDAKISIV 697 (1107)
Q Consensus 629 iwd~~~~~~~~~~~~------~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~-----s~Dg~v~v~ 697 (1107)
|||+.+.+..+..-. +..+...|.+++|+ |++..|+++ +.|+.|.||
T Consensus 453 v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----------------------~~g~~~~~s~~~~~~~~~~i~v~ 510 (543)
T 1nir_A 453 VFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYN----------------------KRGDEVWFSVWNGKNDSSALVVV 510 (543)
T ss_dssp EEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEEC----------------------SSSSEEEEEEECCTTSCCEEEEE
T ss_pred EEECCCCCCCeEEeechhhcccCCCCCceEeccCC----------------------CCCCEEEEEeecCCCCCCeEEEE
Confidence 999998876633211 24567889999999 557777765 347999999
Q ss_pred eCCCcceecCC
Q 001287 698 GGSSENMISSS 708 (1107)
Q Consensus 698 d~~~g~~i~~~ 708 (1107)
|..|++++.+.
T Consensus 511 D~~t~~~~~~i 521 (543)
T 1nir_A 511 DDKTLKLKAVV 521 (543)
T ss_dssp ETTTTEEEEEE
T ss_pred ECCCceEEEee
Confidence 99999987654
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.87 E-value=6.3e-20 Score=231.99 Aligned_cols=224 Identities=13% Similarity=0.066 Sum_probs=153.2
Q ss_pred cccccceeeeecCC--CCCeEEEEEcCCCCEEEEEEC-CC-----cEEEEeCCCccee-eeCCCC---------------
Q 001287 21 AADLNLRIAVHYGI--PATASILAFDHIQRLLAIATL-DG-----RIKVIGGDGIEGL-LISPSQ--------------- 76 (1107)
Q Consensus 21 ~~~~~~~~~~~~G~--~~~i~~lafsp~~~~LA~Gs~-dg-----~I~iw~~~~~~~~-~~~~h~--------------- 76 (1107)
.+.+.++..++.+. ...+..++|+|||++||+++. || .|++|+..+.+.. +...|.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (741)
T 2ecf_A 20 AEKLTLEAITGPLPLSGPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKAR 99 (741)
T ss_dssp --CCCHHHHTSSSCTTCCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC-------------
T ss_pred cccccHHHHhccCCcCCCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhh
Confidence 34455555554332 567999999999999999998 88 8999999765543 332222
Q ss_pred ---------CCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCC---eeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEE
Q 001287 77 ---------LPYKNLEFLQNQGFLISITNDNEIQVWSLESR---SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVI 144 (1107)
Q Consensus 77 ---------~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~---~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw 144 (1107)
..|..++|||||.+|++++. +.|.+||+.++ +......+...+.+++|+|++++|+.++. +.|++|
T Consensus 100 ~~~~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~ 177 (741)
T 2ecf_A 100 RERQRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVI 177 (741)
T ss_dssp -------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEE
T ss_pred hhhhhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEE
Confidence 23889999999999999986 99999999998 66555567788999999999999998874 578888
Q ss_pred EeecCCCceeecceeecccccccccCCC----CCCCCCeEEEEcccCCCCCEEEEEECCC--------------------
Q 001287 145 KYDADEGKLFQLPYNISADALSEKAGFP----LLSHQPVVGVLPHPNSSGNRVLIAYENA-------------------- 200 (1107)
Q Consensus 145 ~~d~~~~~l~~~~~~i~~~~~~~~~~~~----~~~~~~V~~v~f~P~~~~~~ll~~~~dg-------------------- 200 (1107)
+++. ++..+. ...+...-..+.+ ......+.++.|+| +|++|++++.|+
T Consensus 178 d~~~--g~~~~~---~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp--Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~ 250 (741)
T 2ecf_A 178 DLAS--GRQMQL---TADGSTTIGNGIAEFVADEEMDRHTGYWWAP--DDSAIAYARIDESPVPVQKRYEVYADRTDVIE 250 (741)
T ss_dssp ETTT--TEEEEC---CCCCCSSEEESCCCHHHHHHSCCCCSEEECT--TSSCEEEEEEECTTSCEEEEEEECSSCEEEEE
T ss_pred ecCC--CCEEEe---ccCCccceeccccceeeeeccccccceEECC--CCCEEEEEEEcCCCCceEecCCCCCCcccceE
Confidence 7653 444432 1111100000000 00002257899988 788888887765
Q ss_pred -------------eEEEEEccC-CEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEE
Q 001287 201 -------------LVILWDVSE-AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILA 266 (1107)
Q Consensus 201 -------------~V~vwdl~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~ 266 (1107)
.|.+||+.+ ++...+... ..+...+.+++| |||++|+
T Consensus 251 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~--pDg~~l~ 301 (741)
T 2ecf_A 251 QRYPAAGDANVQVKLGVISPAEQAQTQWIDLG---------------------------KEQDIYLARVNW--RDPQHLS 301 (741)
T ss_dssp EECCBTTSCCCEEEEEEECSSTTCCCEEECCC---------------------------SCSSEEEEEEEE--EETTEEE
T ss_pred eecCCCCCCCCeeEEEEEECCCCCceEEecCC---------------------------CCcceEEEEEEe--CCCCEEE
Confidence 778888887 765443210 001567889998 8999998
Q ss_pred EEEc-----CCcEEEEeCCCC
Q 001287 267 VGYI-----DGDILLWNTSTT 282 (1107)
Q Consensus 267 sg~~-----dG~I~lWd~~~~ 282 (1107)
+++. ++.|.+||+.++
T Consensus 302 ~~~~~~~~~~~~i~~~d~~~g 322 (741)
T 2ecf_A 302 FQRQSRDQKKLDLVEVTLASN 322 (741)
T ss_dssp EEEEETTSSEEEEEEEETTTC
T ss_pred EEEecccCCeEEEEEEECCCC
Confidence 7765 567888887643
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.83 E-value=5.2e-19 Score=206.94 Aligned_cols=195 Identities=10% Similarity=0.069 Sum_probs=145.7
Q ss_pred CCeEEEEEcCCCC-EEEEEE----CCC----cEEEEeC--CCccee---eeCCCCCCEEEEEEEe--------------C
Q 001287 36 ATASILAFDHIQR-LLAIAT----LDG----RIKVIGG--DGIEGL---LISPSQLPYKNLEFLQ--------------N 87 (1107)
Q Consensus 36 ~~i~~lafsp~~~-~LA~Gs----~dg----~I~iw~~--~~~~~~---~~~~h~~~V~~l~fs~--------------d 87 (1107)
..+...+|.+.+. ++++|+ .|| .|+|||. ...+.+ ....|...+..+++++ .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 3566778888774 677887 468 8999999 655433 3567877888877765 1
Q ss_pred CCEEEEEeCC------CcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCC---cEEEEEeecCCCceeecce
Q 001287 88 QGFLISITND------NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENG---LMSVIKYDADEGKLFQLPY 158 (1107)
Q Consensus 88 ~~~L~S~s~d------~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg---~V~vw~~d~~~~~l~~~~~ 158 (1107)
+.+++.++.+ ++|++||++.+.......+...|.+++|+|++++|++++.++ .|++|+++. ++...
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t--g~~~~--- 217 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN--GAVRQ--- 217 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT--CCEEE---
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCC--CcEEE---
Confidence 5677777764 799999998776655667888999999999999999998775 888888764 44332
Q ss_pred eecccccccccCCCCCCCCCeEEEEcccCCCCCEEE-EEECCC--eEEEEEccCCEEEEEeCCccccccccccCCCCCCC
Q 001287 159 NISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL-IAYENA--LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGD 235 (1107)
Q Consensus 159 ~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll-~~~~dg--~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 235 (1107)
+..+. ..+.+++|+| +|++|+ +++.++ .|.+||+.+++...+..|
T Consensus 218 -l~~~~------------~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~----------------- 265 (415)
T 2hqs_A 218 -VASFP------------RHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG----------------- 265 (415)
T ss_dssp -EECCS------------SCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCEEECCCC-----------------
T ss_pred -eecCC------------CcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCEEeCcCC-----------------
Confidence 33333 6799999998 688777 555555 499999999887655554
Q ss_pred CccccCCCCCCCCCCceeEEEeecCCCCEEEEEEc-CC--cEEEEeCCC
Q 001287 236 STFLEGISEHQPEEKEISALCWASSSGSILAVGYI-DG--DILLWNTST 281 (1107)
Q Consensus 236 ~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~-dG--~I~lWd~~~ 281 (1107)
...+.+++|. |||++|++++. +| .|.+||+.+
T Consensus 266 -------------~~~~~~~~~s-pdg~~l~~~s~~~g~~~i~~~d~~~ 300 (415)
T 2hqs_A 266 -------------RSNNTEPTWF-PDSQNLAFTSDQAGRPQVYKVNING 300 (415)
T ss_dssp -------------SSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTS
T ss_pred -------------CCcccceEEC-CCCCEEEEEECCCCCcEEEEEECCC
Confidence 5678899985 99999998886 45 566667653
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.82 E-value=1.7e-18 Score=202.65 Aligned_cols=298 Identities=9% Similarity=0.026 Sum_probs=208.9
Q ss_pred CCEEEEEEEeCCC-EEEEEe----CCC----cEEEEEc--CCCeeeee--e-ccCCCeEEEEEec--------------C
Q 001287 77 LPYKNLEFLQNQG-FLISIT----NDN----EIQVWSL--ESRSLACC--L-KWESNITAFSVIS--------------G 128 (1107)
Q Consensus 77 ~~V~~l~fs~d~~-~L~S~s----~d~----~I~vWDl--~s~~~~~~--~-~~~~~Vt~l~~~~--------------~ 128 (1107)
..|....|.+.+. +|++++ .+| +|++||+ .+++.+.. + .+...+..+++.+ .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 4677777877664 555765 467 8999999 88876633 3 4555555555553 1
Q ss_pred CCEEEEEcCC------CcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCC--
Q 001287 129 SHFMYIGDEN------GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA-- 200 (1107)
Q Consensus 129 ~~~l~~g~~d------g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg-- 200 (1107)
+..++.++.+ +.|++|+++. +... .+..|. ..|.+++|+| +|++|++++.++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g--~~~~----~l~~~~------------~~v~~~~~Sp--dg~~la~~s~~~~~ 202 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDG--YNQF----VVHRSP------------QPLMSPAWSP--DGSKLAYVTFESGR 202 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTS--CSCE----EEEEES------------SCEEEEEECT--TSSEEEEEECTTSS
T ss_pred CCEEEEEEecCCCCccceEEEEcCCC--CCCE----EEeCCC------------CcceeeEEcC--CCCEEEEEEecCCC
Confidence 4455554443 6888998763 2222 244454 7799999999 788899998875
Q ss_pred -eEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEE-EEEcCCc--EEE
Q 001287 201 -LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILA-VGYIDGD--ILL 276 (1107)
Q Consensus 201 -~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~-sg~~dG~--I~l 276 (1107)
.|++||+.+++...+..+ ...+.+++|. |||+.|+ +++.+|. |++
T Consensus 203 ~~i~~~d~~tg~~~~l~~~------------------------------~~~~~~~~~s-pdg~~la~~~~~~g~~~i~~ 251 (415)
T 2hqs_A 203 SALVIQTLANGAVRQVASF------------------------------PRHNGAPAFS-PDGSKLAFALSKTGSLNLYV 251 (415)
T ss_dssp CEEEEEETTTCCEEEEECC------------------------------SSCEEEEEEC-TTSSEEEEEECTTSSCEEEE
T ss_pred cEEEEEECCCCcEEEeecC------------------------------CCcccCEEEc-CCCCEEEEEEecCCCceEEE
Confidence 999999999887766655 5678899985 9999888 6666665 888
Q ss_pred EeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccc
Q 001287 277 WNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMEN 356 (1107)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~ 356 (1107)
||+.+++ ..++.. . .
T Consensus 252 ~d~~~~~------------~~~l~~--------------------------------~-~-------------------- 266 (415)
T 2hqs_A 252 MDLASGQ------------IRQVTD--------------------------------G-R-------------------- 266 (415)
T ss_dssp EETTTCC------------EEECCC--------------------------------C-S--------------------
T ss_pred EECCCCC------------EEeCcC--------------------------------C-C--------------------
Confidence 8886431 000000 0 0
Q ss_pred cceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCc
Q 001287 357 LRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPI 436 (1107)
Q Consensus 357 ~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (1107)
+
T Consensus 267 -----------------------------------------~-------------------------------------- 267 (415)
T 2hqs_A 267 -----------------------------------------S-------------------------------------- 267 (415)
T ss_dssp -----------------------------------------S--------------------------------------
T ss_pred -----------------------------------------C--------------------------------------
Confidence 0
Q ss_pred eeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEec-CC--cEEEEeCC
Q 001287 437 MTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYH-DG--SVRIWDAT 513 (1107)
Q Consensus 437 it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~-Dg--tIriWd~~ 513 (1107)
....++++|+++.|++++. +| .|++||+.
T Consensus 268 ------------------------------------------------~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~ 299 (415)
T 2hqs_A 268 ------------------------------------------------NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN 299 (415)
T ss_dssp ------------------------------------------------CEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred ------------------------------------------------cccceEECCCCCEEEEEECCCCCcEEEEEECC
Confidence 0001146677777777765 45 57777888
Q ss_pred CCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccC---ceEEEEEecCCCCCccceeeccCcCcceecccC
Q 001287 514 YPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF---GLVYIYNLNGSLDAKNFLFVLETKSEVHALPEG 590 (1107)
Q Consensus 514 ~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~d---g~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (1107)
++... .+..|...+.+++|+|||++|++++.+ +.|.+|++.+..
T Consensus 300 ~~~~~------------~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~--------------------- 346 (415)
T 2hqs_A 300 GGAPQ------------RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--------------------- 346 (415)
T ss_dssp SSCCE------------ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC---------------------
T ss_pred CCCEE------------EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC---------------------
Confidence 77643 234556689999999999999988864 578888887641
Q ss_pred CcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCC---eEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecc
Q 001287 591 KISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECG---RVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFK 660 (1107)
Q Consensus 591 ~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg---~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~ 660 (1107)
...+..+. .+.+++|+|+|++|++++.++ .|++||+.+.... .+.+|...|.+++|++..
T Consensus 347 -----~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~----~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 347 -----VQVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA----RLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp -----EEECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEE----ECCCSSSEEEEEEECCCC
T ss_pred -----EEEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEE----EeeCCCCCCcCCcccccc
Confidence 12334444 899999999999999988777 8999999877654 667899999999999653
No 134
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.82 E-value=2.4e-18 Score=216.23 Aligned_cols=205 Identities=11% Similarity=0.141 Sum_probs=138.3
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCcce--eeeCCCC-----------------CCEEEEEEEeCCCEEEEEeCCC
Q 001287 38 ASILAFDHIQRLLAIATLDGRIKVIGGDGIEG--LLISPSQ-----------------LPYKNLEFLQNQGFLISITNDN 98 (1107)
Q Consensus 38 i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~--~~~~~h~-----------------~~V~~l~fs~d~~~L~S~s~d~ 98 (1107)
+..+.|. +..+++++.|| | +||..+.+. ..+..|. .+|.+++|+|| ++++.+. ++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence 4446777 66777888888 8 999865443 3333332 57999999999 6666654 69
Q ss_pred cEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCC---CceeecceeecccccccccC--CCC
Q 001287 99 EIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADE---GKLFQLPYNISADALSEKAG--FPL 173 (1107)
Q Consensus 99 ~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~---~~l~~~~~~i~~~~~~~~~~--~~~ 173 (1107)
.|.+||+.+++......+...+.+++|+|++++|+.+ .++.|++|+++... ++..+. ...+......+ ...
T Consensus 102 ~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~---~~~~~~~~~~g~~~~~ 177 (706)
T 2z3z_A 102 GLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAV---TIDGTETLVYGQAVHQ 177 (706)
T ss_dssp EEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEES---CSCCBTTEEESSCCGG
T ss_pred EEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEe---ccCCCCCeEcccchhh
Confidence 9999999999887777777889999999999999985 67899999987410 222221 11111000000 000
Q ss_pred CCCCCeEEEEcccCCCCCEEEEEE---------------------------------CCCeEEEEEccCCEEEEEeCCcc
Q 001287 174 LSHQPVVGVLPHPNSSGNRVLIAY---------------------------------ENALVILWDVSEAQIIFVGGGKD 220 (1107)
Q Consensus 174 ~~~~~V~~v~f~P~~~~~~ll~~~---------------------------------~dg~V~vwdl~~~~~~~~~g~~~ 220 (1107)
.....+.++.|+| +|++|++++ .+..|.+||+.+++.......
T Consensus 178 ee~~~~~~~~~Sp--Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~-- 253 (706)
T 2z3z_A 178 REFGIEKGTFWSP--KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG-- 253 (706)
T ss_dssp GCTTCCCSEEECT--TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC--
T ss_pred hhcCCCceEEECC--CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC--
Confidence 1113368899988 788888887 446899999999876544310
Q ss_pred ccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCC-----cEEEEeCCCC
Q 001287 221 LQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG-----DILLWNTSTT 282 (1107)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG-----~I~lWd~~~~ 282 (1107)
..+...+.+++|. |||++|++++.++ .|.+||+.++
T Consensus 254 -------------------------~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~v~~~d~~~g 294 (706)
T 2z3z_A 254 -------------------------EPKEKFLTNLSWS-PDENILYVAEVNRAQNECKVNAYDAETG 294 (706)
T ss_dssp -------------------------SCTTCEEEEEEEC-TTSSEEEEEEECTTSCEEEEEEEETTTC
T ss_pred -------------------------CCCceeEeeEEEE-CCCCEEEEEEeCCCCCeeEEEEEECCCC
Confidence 0014568899985 9999999988775 8888887643
No 135
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.82 E-value=3.8e-18 Score=215.59 Aligned_cols=169 Identities=10% Similarity=0.114 Sum_probs=114.7
Q ss_pred CCCEEEEEEEeCCCEEEEEeC-CC-----cEEEEEcCCCeeeeeeccC-------------------------CCeEEEE
Q 001287 76 QLPYKNLEFLQNQGFLISITN-DN-----EIQVWSLESRSLACCLKWE-------------------------SNITAFS 124 (1107)
Q Consensus 76 ~~~V~~l~fs~d~~~L~S~s~-d~-----~I~vWDl~s~~~~~~~~~~-------------------------~~Vt~l~ 124 (1107)
...|..++|||||.+|++++. |+ .|.+||+.+++........ ..|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457999999999999999998 88 8999999999776555321 2378999
Q ss_pred EecCCCEEEEEcCCCcEEEEEeecCCC-ceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEE
Q 001287 125 VISGSHFMYIGDENGLMSVIKYDADEG-KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVI 203 (1107)
Q Consensus 125 ~~~~~~~l~~g~~dg~V~vw~~d~~~~-~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~ 203 (1107)
|+|++++|++++. +.|++|+++.... .+.+ +..+. ..+.+++|+| +|++|+.++ ++.|.
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~----l~~~~------------~~~~~~~~SP--DG~~la~~~-~~~i~ 175 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ----LTHGE------------GFATDAKLSP--KGGFVSFIR-GRNLW 175 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCB----CCCSS------------SCEEEEEECT--TSSEEEEEE-TTEEE
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEE----cccCC------------cccccccCCC--CCCEEEEEe-CCcEE
Confidence 9999999999887 8898888764200 2222 33333 6699999998 788787776 56899
Q ss_pred EEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCC-cEEEEe
Q 001287 204 LWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG-DILLWN 278 (1107)
Q Consensus 204 vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG-~I~lWd 278 (1107)
+||+.+++...+......... .+.. +.+. ..+...+.+++|. |||++|++++.|+ .+..|+
T Consensus 176 ~~d~~~g~~~~~~~~~~~~~~-------~g~~----~~v~--~~~~~~~~~~~~S-pDg~~l~~~~~d~~~~~~~~ 237 (741)
T 2ecf_A 176 VIDLASGRQMQLTADGSTTIG-------NGIA----EFVA--DEEMDRHTGYWWA-PDDSAIAYARIDESPVPVQK 237 (741)
T ss_dssp EEETTTTEEEECCCCCCSSEE-------ESCC----CHHH--HHHSCCCCSEEEC-TTSSCEEEEEEECTTSCEEE
T ss_pred EEecCCCCEEEeccCCcccee-------cccc----ceee--eeccccccceEEC-CCCCEEEEEEEcCCCCceEe
Confidence 999999887654321000000 0000 0000 0002235778985 9999999987654 344443
No 136
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.79 E-value=2e-16 Score=179.02 Aligned_cols=145 Identities=14% Similarity=0.195 Sum_probs=105.2
Q ss_pred EEEEE-eCCCcEEEEEcC-CC--eeeeeeccCCCeEEEEEecCCCEEEEEcCC-CcEEEEEeecCCCceeecceeecccc
Q 001287 90 FLISI-TNDNEIQVWSLE-SR--SLACCLKWESNITAFSVISGSHFMYIGDEN-GLMSVIKYDADEGKLFQLPYNISADA 164 (1107)
Q Consensus 90 ~L~S~-s~d~~I~vWDl~-s~--~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~d-g~V~vw~~d~~~~~l~~~~~~i~~~~ 164 (1107)
+|+.+ +.++.|.+||+. ++ +.+....+...+.+++|+|++++|++++.+ +.|++|+++...+++... ..++.+
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~- 83 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA-AESALP- 83 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE-EEEECS-
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeec-cccccC-
Confidence 44444 679999999995 34 445556777889999999999999988876 999999998555554431 112211
Q ss_pred cccccCCCCCCCCCeEEEEcccCCCCCEEEEEEC-CCeEEEEEccC---CEEEEEeCCccccccccccCCCCCCCCcccc
Q 001287 165 LSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NALVILWDVSE---AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLE 240 (1107)
Q Consensus 165 ~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~-dg~V~vwdl~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 240 (1107)
..+.+++|+| ++++|+++.. ++.|.+||+.. .+.......
T Consensus 84 ------------~~~~~~~~s~--dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---------------------- 127 (343)
T 1ri6_A 84 ------------GSLTHISTDH--QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG---------------------- 127 (343)
T ss_dssp ------------SCCSEEEECT--TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC----------------------
T ss_pred ------------CCCcEEEEcC--CCCEEEEEecCCCeEEEEECCCCccccccccccC----------------------
Confidence 3578999988 6776766665 88999999943 333333221
Q ss_pred CCCCCCCCCCceeEEEeecCCCCEEEEEE-cCCcEEEEeCCC
Q 001287 241 GISEHQPEEKEISALCWASSSGSILAVGY-IDGDILLWNTST 281 (1107)
Q Consensus 241 ~~~~~~~~~~~Vtsl~w~spdg~~l~sg~-~dG~I~lWd~~~ 281 (1107)
...+.+++|. |+|++|++++ .++.|.+||+.+
T Consensus 128 --------~~~~~~~~~s-~dg~~l~~~~~~~~~v~~~d~~~ 160 (343)
T 1ri6_A 128 --------LDGCHSANIS-PDNRTLWVPALKQDRICLFTVSD 160 (343)
T ss_dssp --------CTTBCCCEEC-TTSSEEEEEEGGGTEEEEEEECT
T ss_pred --------CCCceEEEEC-CCCCEEEEecCCCCEEEEEEecC
Confidence 3347788875 9999888887 899999999864
No 137
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.78 E-value=8.5e-18 Score=211.76 Aligned_cols=216 Identities=10% Similarity=0.022 Sum_probs=141.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcce-eeeCCCCC---CEEEEEEEeCCCEEEEEeCC---------Cc
Q 001287 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG-LLISPSQL---PYKNLEFLQNQGFLISITND---------NE 99 (1107)
Q Consensus 33 G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~-~~~~~h~~---~V~~l~fs~d~~~L~S~s~d---------~~ 99 (1107)
.....+.+++|+|||+++++ +.||.|++|+..+.+. .+...|.. .|.+++|||||.+|++++.+ +.
T Consensus 14 ~~~~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 14 DFKIHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp TTCCCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred CCcccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence 34445778999999998877 6899999999965443 34445554 49999999999999999875 67
Q ss_pred EEEEEcCCCeeeeee---ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeeccccccc-ccCCC---
Q 001287 100 IQVWSLESRSLACCL---KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSE-KAGFP--- 172 (1107)
Q Consensus 100 I~vWDl~s~~~~~~~---~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~-~~~~~--- 172 (1107)
|.+||+.+++..... .+...+.+++|+|++++|+.++. +.|++|+.+. ++..+. ...+.... ..+.+
T Consensus 93 i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~--g~~~~~---~~~~~~~~~~~g~~~~v 166 (723)
T 1xfd_A 93 YVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVG--KQAIRV---VSTGKEGVIYNGLSDWL 166 (723)
T ss_dssp EEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSS--SCCEEE---ECCCBTTTEEEEECCHH
T ss_pred EEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCC--CceEEE---ecCCCCCceECccccee
Confidence 889999998763222 23345889999999999998876 6788887664 443332 11111000 00000
Q ss_pred --CCCCCCeEEEEcccCCCCCEEEEEECCC----------------------------------eEEEEEccCCEE-EEE
Q 001287 173 --LLSHQPVVGVLPHPNSSGNRVLIAYENA----------------------------------LVILWDVSEAQI-IFV 215 (1107)
Q Consensus 173 --~~~~~~V~~v~f~P~~~~~~ll~~~~dg----------------------------------~V~vwdl~~~~~-~~~ 215 (1107)
..-...+.+++|+| +|++|++++.++ .|.+||+.+++. ..+
T Consensus 167 ~~ee~~~~~~~~~~Sp--Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l 244 (723)
T 1xfd_A 167 YEEEILKTHIAHWWSP--DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEM 244 (723)
T ss_dssp HHHTTSSSSEEEEECT--TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEEC
T ss_pred EEEEeccCcceEEECC--CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEe
Confidence 00002358999998 788888887553 677777776653 222
Q ss_pred eCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcC----CcEEEEeCCCC
Q 001287 216 GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID----GDILLWNTSTT 282 (1107)
Q Consensus 216 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~d----G~I~lWd~~~~ 282 (1107)
..+.... .....+.++.|. |||++|++.... +.|.+||+.++
T Consensus 245 ~~~~~~~------------------------~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~i~~~d~~~g 290 (723)
T 1xfd_A 245 MPPDDPR------------------------MREYYITMVKWA-TSTKVAVTWLNRAQNVSILTLCDATTG 290 (723)
T ss_dssp CCCCCGG------------------------GSSEEEEEEEES-SSSEEEEEEEETTSCEEEEEEEETTTC
T ss_pred eCCccCC------------------------CccceeEEEEEe-CCCeEEEEEEcCCCCeEEEEEEeCCCC
Confidence 2110000 014568889985 999988776543 56888887643
No 138
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.78 E-value=1.7e-16 Score=179.59 Aligned_cols=188 Identities=10% Similarity=0.138 Sum_probs=134.0
Q ss_pred EEEEEECCCcEEEEeCCC---cceeeeCCCCCCEEEEEEEeCCCEEEEEeCC-CcEEEEEcC--CCe--eeeeeccCCCe
Q 001287 49 LLAIATLDGRIKVIGGDG---IEGLLISPSQLPYKNLEFLQNQGFLISITND-NEIQVWSLE--SRS--LACCLKWESNI 120 (1107)
Q Consensus 49 ~LA~Gs~dg~I~iw~~~~---~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d-~~I~vWDl~--s~~--~~~~~~~~~~V 120 (1107)
++++++.|+.|++|+++. .+.+....|...+.+++|+|++.+|++++.+ +.|.+|++. ++. .+..+.....+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 86 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 86 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCC
Confidence 444447799999999852 2334445678889999999999999999886 899999998 554 33444445588
Q ss_pred EEEEEecCCCEEEEEcC-CCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEE-C
Q 001287 121 TAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-E 198 (1107)
Q Consensus 121 t~l~~~~~~~~l~~g~~-dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~-~ 198 (1107)
.+++|+|++++|++++. ++.|++|+++ ++........+..+ ..+.+++|+| ++++++++. .
T Consensus 87 ~~~~~s~dg~~l~~~~~~~~~i~~~d~~--~~~~~~~~~~~~~~-------------~~~~~~~~s~--dg~~l~~~~~~ 149 (343)
T 1ri6_A 87 THISTDHQGQFVFVGSYNAGNVSVTRLE--DGLPVGVVDVVEGL-------------DGCHSANISP--DNRTLWVPALK 149 (343)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEE--TTEEEEEEEEECCC-------------TTBCCCEECT--TSSEEEEEEGG
T ss_pred cEEEEcCCCCEEEEEecCCCeEEEEECC--CCccccccccccCC-------------CCceEEEECC--CCCEEEEecCC
Confidence 99999999998877764 8889999996 22221111122221 3488899988 677788777 8
Q ss_pred CCeEEEEEccC-CEEEEEe--CCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEE-cCCcE
Q 001287 199 NALVILWDVSE-AQIIFVG--GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY-IDGDI 274 (1107)
Q Consensus 199 dg~V~vwdl~~-~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~-~dG~I 274 (1107)
++.|.+||+.+ +++.... .. . . .....+.+++|. |+|++|++++ .++.|
T Consensus 150 ~~~v~~~d~~~~~~~~~~~~~~~---~----~-------------------~~~~~~~~~~~~-pdg~~l~~~~~~~~~i 202 (343)
T 1ri6_A 150 QDRICLFTVSDDGHLVAQDPAEV---T----T-------------------VEGAGPRHMVFH-PNEQYAYCVNELNSSV 202 (343)
T ss_dssp GTEEEEEEECTTSCEEEEEEEEE---E----C-------------------STTCCEEEEEEC-TTSSEEEEEETTTTEE
T ss_pred CCEEEEEEecCCCceeeeccccc---c----c-------------------CCCCCcceEEEC-CCCCEEEEEeCCCCEE
Confidence 99999999987 6543221 00 0 0 003356788985 9999776555 78999
Q ss_pred EEEeCC
Q 001287 275 LLWNTS 280 (1107)
Q Consensus 275 ~lWd~~ 280 (1107)
.+|++.
T Consensus 203 ~~~~~~ 208 (343)
T 1ri6_A 203 DVWELK 208 (343)
T ss_dssp EEEESS
T ss_pred EEEEec
Confidence 999985
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.77 E-value=1.3e-16 Score=200.29 Aligned_cols=157 Identities=14% Similarity=0.140 Sum_probs=111.2
Q ss_pred cccCCCCcEEEEEecCC-----cEEEEeCCCC-ceeEEEeeccceeeeeecCCCCCeEEEEEEe--CCCeEEEeccCceE
Q 001287 489 TKCHSVDRVYLAGYHDG-----SVRIWDATYP-VFKLICALDAEVQGIEVAGSRAPVSTLSFCF--INSSLAVGNEFGLV 560 (1107)
Q Consensus 489 ~~~s~~~~~laTgs~Dg-----tIriWd~~~~-~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fsp--d~~~Lasg~~dg~V 560 (1107)
++++||++.|++++.|+ .|++||+.++ .+..+.... -......+.+++|+| ||++|++++.+|.+
T Consensus 263 ~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~-------~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~ 335 (706)
T 2z3z_A 263 LSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVET-------DKHYVEPLHPLTFLPGSNNQFIWQSRRDGWN 335 (706)
T ss_dssp EEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEE-------CSSCCCCCSCCEECTTCSSEEEEEECTTSSC
T ss_pred EEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEcc-------CCCeECccCCceeecCCCCEEEEEEccCCcc
Confidence 37889999999887776 8999999988 544222110 011112356789999 99999999999999
Q ss_pred EEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEE-EEEcCCCCEEEEEe-CCC----eEEEEEcCC
Q 001287 561 YIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRA-LQFTSSGAKLAVGF-ECG----RVAVLDMNL 634 (1107)
Q Consensus 561 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~-la~sp~~~~la~Gs-~dg----~V~iwd~~~ 634 (1107)
+||.++.... .+..+..+...|.+ ++|+|+++.|++++ .++ .|+.||+.+
T Consensus 336 ~l~~~~~~~~------------------------~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 391 (706)
T 2z3z_A 336 HLYLYDTTGR------------------------LIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG 391 (706)
T ss_dssp EEEEEETTSC------------------------EEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC
T ss_pred EEEEEECCCC------------------------EEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC
Confidence 9999874311 23445667777877 89999998776654 444 778888877
Q ss_pred CeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCC----ceEEEEeCCCcc
Q 001287 635 LSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKD----AKISIVGGSSEN 703 (1107)
Q Consensus 635 ~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~D----g~v~v~d~~~g~ 703 (1107)
+... .+. |...+.++.|+ |++.+|+....+ +.|.+||..+++
T Consensus 392 ~~~~----~l~-~~~~~~~~~~s----------------------pdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 392 GKTK----DLT-PESGMHRTQLS----------------------PDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp CCCE----ESC-CSSSEEEEEEC----------------------TTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCce----ecc-CCCceEEEEEC----------------------CCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 6533 222 66779999998 556666655443 569999998765
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.75 E-value=1.4e-16 Score=175.68 Aligned_cols=176 Identities=10% Similarity=0.130 Sum_probs=133.6
Q ss_pred EECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCC-Ceeeeeec-c-CCCeEEEEEecCC
Q 001287 53 ATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES-RSLACCLK-W-ESNITAFSVISGS 129 (1107)
Q Consensus 53 Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s-~~~~~~~~-~-~~~Vt~l~~~~~~ 129 (1107)
++.|+.|++|+....+...+..|...|.+++|+|++.+|++++ ++.|.+||+.+ ++...... + ...|.+++|+|++
T Consensus 18 ~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg 96 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG 96 (297)
T ss_dssp CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS
T ss_pred CCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCC
Confidence 4578999999998877777777899999999999999999887 88999999999 77665553 2 3678999999999
Q ss_pred CEEEEEc--CCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEE-EEECCCeEEEEE
Q 001287 130 HFMYIGD--ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL-IAYENALVILWD 206 (1107)
Q Consensus 130 ~~l~~g~--~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll-~~~~dg~V~vwd 206 (1107)
++|+++. .++.+.||.++...+.... +..+ ..+.+++|+| ++++|+ ++..++.+.||+
T Consensus 97 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~-------------~~~~~~~~sp--dg~~l~~~~~~~~~~~l~~ 157 (297)
T 2ojh_A 97 ALYAISDKVEFGKSAIYLLPSTGGTPRL----MTKN-------------LPSYWHGWSP--DGKSFTYCGIRDQVFDIYS 157 (297)
T ss_dssp SEEEEEECTTTSSCEEEEEETTCCCCEE----CCSS-------------SSEEEEEECT--TSSEEEEEEEETTEEEEEE
T ss_pred CEEEEEEeCCCCcceEEEEECCCCceEE----eecC-------------CCccceEECC--CCCEEEEEECCCCceEEEE
Confidence 9999998 4567888988865554332 2222 3488899988 677666 788899999998
Q ss_pred cc--CCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEE-cCCcEEEEeC
Q 001287 207 VS--EAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY-IDGDILLWNT 279 (1107)
Q Consensus 207 l~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~-~dG~I~lWd~ 279 (1107)
+. ++....+..+ ...+.+++|. |+|+.|+.++ .++.+.+|++
T Consensus 158 ~~~~~~~~~~~~~~------------------------------~~~~~~~~~s-~dg~~l~~~~~~~~~~~i~~~ 202 (297)
T 2ojh_A 158 MDIDSGVETRLTHG------------------------------EGRNDGPDYS-PDGRWIYFNSSRTGQMQIWRV 202 (297)
T ss_dssp EETTTCCEEECCCS------------------------------SSCEEEEEEC-TTSSEEEEEECTTSSCEEEEE
T ss_pred EECCCCcceEcccC------------------------------CCccccceEC-CCCCEEEEEecCCCCccEEEE
Confidence 64 3444333322 4567888875 8888777665 4777777765
No 141
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.75 E-value=6.9e-16 Score=174.02 Aligned_cols=147 Identities=16% Similarity=0.225 Sum_probs=108.1
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeeeccCC---CeEEEEEecCCCEEEEE-cCCCcEEEEEeecCCCceeecceeecccc
Q 001287 89 GFLISITNDNEIQVWSLESRSLACCLKWES---NITAFSVISGSHFMYIG-DENGLMSVIKYDADEGKLFQLPYNISADA 164 (1107)
Q Consensus 89 ~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~---~Vt~l~~~~~~~~l~~g-~~dg~V~vw~~d~~~~~l~~~~~~i~~~~ 164 (1107)
.+|++++.++.|.+||+.+++.+..+.... .+.+++|+|++++++++ ..++.|++|++.. ++.... +.+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~--~~~~~~-~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT--GETLGR-IDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT--CCEEEE-EECCBTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCC--CCeEee-EEcCCcc
Confidence 478999999999999999999988886665 68999999999877654 5578888887653 444432 2221100
Q ss_pred cccccCCCCCCCCCeEEEEcccCCCCCEEEEEE------------CCCeEEEEEccCCEEEEEeCCccccccccccCCCC
Q 001287 165 LSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY------------ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPS 232 (1107)
Q Consensus 165 ~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~------------~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~ 232 (1107)
.+...+.+++|+| ++++++++. .++.|.+||+.+++.......
T Consensus 79 ---------~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-------------- 133 (337)
T 1pby_B 79 ---------ERVKSLFGAALSP--DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-------------- 133 (337)
T ss_dssp ---------EEEECTTCEEECT--TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--------------
T ss_pred ---------cccccccceEECC--CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC--------------
Confidence 0002467889988 687788876 579999999999887654422
Q ss_pred CCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 233 EGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
...+.+++|. |+|++|+++ ++.|.+||+.++
T Consensus 134 ----------------~~~~~~~~~s-~dg~~l~~~--~~~i~~~d~~~~ 164 (337)
T 1pby_B 134 ----------------PRQITMLAWA-RDGSKLYGL--GRDLHVMDPEAG 164 (337)
T ss_dssp ----------------CSSCCCEEEC-TTSSCEEEE--SSSEEEEETTTT
T ss_pred ----------------CCCcceeEEC-CCCCEEEEe--CCeEEEEECCCC
Confidence 3346678875 999988888 789999999765
No 142
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.73 E-value=1.3e-15 Score=171.70 Aligned_cols=149 Identities=8% Similarity=0.054 Sum_probs=103.1
Q ss_pred EEEEeCCCE-EEEEeCCCcEEEEEcCCCeeeeeecc-CCCeEEEEEecCCCEEEEEcC-CCcEEEEEeecCCCce-eecc
Q 001287 82 LEFLQNQGF-LISITNDNEIQVWSLESRSLACCLKW-ESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKL-FQLP 157 (1107)
Q Consensus 82 l~fs~d~~~-L~S~s~d~~I~vWDl~s~~~~~~~~~-~~~Vt~l~~~~~~~~l~~g~~-dg~V~vw~~d~~~~~l-~~~~ 157 (1107)
..|.+++.+ +++.+.++.|.+||+.+++.+..+.. ...+ +++|+|+++++++++. ++.|++|+.+. +++ ..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~--~~~~~~-- 77 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQL--EPPKVV-- 77 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSS--SSCEEE--
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCC--CceeEE--
Confidence 456666555 56666789999999999988777654 3455 9999999998877766 78887777654 444 22
Q ss_pred eeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCC---eEEEEEccCCEEEEEeCCccccccccccCCCCCC
Q 001287 158 YNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA---LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEG 234 (1107)
Q Consensus 158 ~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg---~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~ 234 (1107)
.+..+. .+..+++|+| +++++++++.++ .|.+||+.+++.+.....
T Consensus 78 -~~~~~~------------~~~~~~~~s~--dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~---------------- 126 (331)
T 3u4y_A 78 -AIQEGQ------------SSMADVDITP--DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI---------------- 126 (331)
T ss_dssp -EEEECS------------SCCCCEEECT--TSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC----------------
T ss_pred -ecccCC------------CCccceEECC--CCCEEEEecCCCCcccEEEEECCCCCeEEEEEC----------------
Confidence 133222 3344489988 788788555553 899999999887655432
Q ss_pred CCccccCCCCCCCCCCceeEEEeecCCCCEEEEE-EcCCc-EEEEeCCC
Q 001287 235 DSTFLEGISEHQPEEKEISALCWASSSGSILAVG-YIDGD-ILLWNTST 281 (1107)
Q Consensus 235 ~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg-~~dG~-I~lWd~~~ 281 (1107)
.....+++|. |+|++|+++ ..++. |.+|++..
T Consensus 127 --------------~~~~~~~~~s-pdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 127 --------------PYDAVGIAIS-PNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp --------------CTTEEEEEEC-TTSSCEEEEEETTTTEEEEEEECT
T ss_pred --------------CCCccceEEC-CCCCEEEEEecCCCceEEEEEECC
Confidence 3345788985 999866555 55588 99999863
No 143
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.73 E-value=3.7e-15 Score=169.51 Aligned_cols=164 Identities=11% Similarity=0.108 Sum_probs=111.7
Q ss_pred ccCCCCcEEEEEecCCcEEEEeCC-CCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEE-eccCceEEEEEecC
Q 001287 490 KCHSVDRVYLAGYHDGSVRIWDAT-YPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAV-GNEFGLVYIYNLNG 567 (1107)
Q Consensus 490 ~~s~~~~~laTgs~DgtIriWd~~-~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Las-g~~dg~V~vw~~~~ 567 (1107)
+++|++++++++..++.|++||+. .+.+.....+. . .....+..++|+|||++|++ ...++.|.+|++..
T Consensus 147 ~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-------~-~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 218 (347)
T 3hfq_A 147 DLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLT-------M-EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDT 218 (347)
T ss_dssp EECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEE-------C-CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEE-------c-CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 678888888888889999999998 55544222111 1 12235788999999996665 56689999999986
Q ss_pred CCCCccceeeccCcCcceecccCCcceeEEEEeecC------cCEEEEEEcCCCCEE-EEEeCCCeEEEEEcCCC-eEEE
Q 001287 568 SLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVN------SPVRALQFTSSGAKL-AVGFECGRVAVLDMNLL-SVLF 639 (1107)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~------~~Vt~la~sp~~~~l-a~Gs~dg~V~iwd~~~~-~~~~ 639 (1107)
.... +..+..+.... ..+..++|+|||++| +++..++.|.+||+... ...
T Consensus 219 ~~g~---------------------~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~- 276 (347)
T 3hfq_A 219 QTGA---------------------FTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLT- 276 (347)
T ss_dssp TTTE---------------------EEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEE-
T ss_pred CCCc---------------------eEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEE-
Confidence 3211 01122222222 458899999999977 55567899999999732 221
Q ss_pred EeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCC-ceEEEE--eCCCccee
Q 001287 640 FTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKD-AKISIV--GGSSENMI 705 (1107)
Q Consensus 640 ~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~D-g~v~v~--d~~~g~~i 705 (1107)
....+..+...+..++|+ |++.+|+++..+ +.|.+| |.++|++.
T Consensus 277 ~~~~~~~~~~~~~~~~~s----------------------pdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 277 LIQQISTEGDFPRDFDLD----------------------PTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEECSSSCCCEEEEC----------------------TTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EeEEEecCCCCcCeEEEC----------------------CCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 122334456667889998 668878877765 899999 67777764
No 144
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.71 E-value=1.1e-14 Score=165.61 Aligned_cols=167 Identities=12% Similarity=0.111 Sum_probs=121.8
Q ss_pred CCCCEEEEEEEeCCCEEEEEeC-------CCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEc-CCCcEEEEEe
Q 001287 75 SQLPYKNLEFLQNQGFLISITN-------DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKY 146 (1107)
Q Consensus 75 h~~~V~~l~fs~d~~~L~S~s~-------d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~-~dg~V~vw~~ 146 (1107)
....+..++|+|++.+|+.++. ++.|.+||..+++.+..+.....+.+++++++++++++++ .++.|.+|+.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 3456889999999999988874 4679999999999988887777788999999999776665 4688877775
Q ss_pred ecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEE--CCCeEEEEEccCCEEEEEeC-Cccccc
Q 001287 147 DADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY--ENALVILWDVSEAQIIFVGG-GKDLQL 223 (1107)
Q Consensus 147 d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~--~dg~V~vwdl~~~~~~~~~g-~~~~~~ 223 (1107)
. ++++... ++.+.. ..........+.+++|+| ++++++++. .++.|.+||+.+++...... +
T Consensus 119 ~--~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~----- 183 (353)
T 3vgz_A 119 K--TGEVKGR---LVLDDR---KRTEEVRPLQPRELVADD--ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNT----- 183 (353)
T ss_dssp T--TCCEEEE---EESCCC---CCCSSCCCCEEEEEEEET--TTTEEEEEEESSSCEEEEEETTTTEEEEEECCC-----
T ss_pred C--CCeeEEE---EecCCC---ccccccCCCCCceEEECC--CCCEEEEEecCCCceEEEEcCCCCceEEEecCC-----
Confidence 4 3555432 322110 000000012378899988 677777766 47899999999998876543 2
Q ss_pred cccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 224 KDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
...+.+++|. |+|++|+++..++.|.+||..++
T Consensus 184 -------------------------~~~~~~~~~s-~dg~~l~~~~~~~~i~~~d~~~~ 216 (353)
T 3vgz_A 184 -------------------------GKMSTGLALD-SEGKRLYTTNADGELITIDTADN 216 (353)
T ss_dssp -------------------------CTTCCCCEEE-TTTTEEEEECTTSEEEEEETTTT
T ss_pred -------------------------CCccceEEEC-CCCCEEEEEcCCCeEEEEECCCC
Confidence 2346678875 99999999999999999998654
No 145
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.71 E-value=4.5e-16 Score=195.84 Aligned_cols=153 Identities=11% Similarity=0.039 Sum_probs=104.3
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCC-C---CEEEEEEEeCCCEEEEEeC---------CCcEEEEEc
Q 001287 39 SILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQ-L---PYKNLEFLQNQGFLISITN---------DNEIQVWSL 105 (1107)
Q Consensus 39 ~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~-~---~V~~l~fs~d~~~L~S~s~---------d~~I~vWDl 105 (1107)
..++|+|++++++.+ .||.|++|+..+.+...+..+. . .|.+++|||||.+|++++. ++.|.+||+
T Consensus 19 ~~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 19 FFPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 368999999776655 6999999999776655444433 2 4999999999999999886 689999999
Q ss_pred CCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCC-----CCCCCeE
Q 001287 106 ESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPL-----LSHQPVV 180 (1107)
Q Consensus 106 ~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~-----~~~~~V~ 180 (1107)
.+++.+........+..++|+|++++|+.+. ++.|++|+++. +...+. ...++...-..+.+. .-.....
T Consensus 98 ~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~--g~~~~l--~~~~~~~~v~~g~~~~v~~ee~~~~~~ 172 (719)
T 1z68_A 98 SNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPG--DPPFQI--TFNGRENKIFNGIPDWVYEEEMLATKY 172 (719)
T ss_dssp TTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTT--SCCEEC--CCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred CCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCC--CCcEEE--ecCCCcCCeEcccccceeeeecccCcc
Confidence 9998743233346789999999999999885 67888888754 333321 011111000000000 0001125
Q ss_pred EEEcccCCCCCEEEEEECC
Q 001287 181 GVLPHPNSSGNRVLIAYEN 199 (1107)
Q Consensus 181 ~v~f~P~~~~~~ll~~~~d 199 (1107)
+++|+| +|++|+.++.|
T Consensus 173 ~~~wSP--DG~~la~~~~d 189 (719)
T 1z68_A 173 ALWWSP--NGKFLAYAEFN 189 (719)
T ss_dssp CEEECT--TSSEEEEEEEE
T ss_pred cEEECC--CCCEEEEEEEC
Confidence 899998 78889888765
No 146
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.71 E-value=4.6e-16 Score=195.86 Aligned_cols=172 Identities=12% Similarity=0.213 Sum_probs=114.0
Q ss_pred CCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeeccCC----CeEEEEEecCCCEEEEEcCC---------CcEEE
Q 001287 77 LPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWES----NITAFSVISGSHFMYIGDEN---------GLMSV 143 (1107)
Q Consensus 77 ~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~----~Vt~l~~~~~~~~l~~g~~d---------g~V~v 143 (1107)
..+..++|+|||.++++ +.|++|++||+.+++....+.... .|.+++|+|++++|++++.+ +.+++
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 45778999999987766 789999999999998776664433 49999999999999998764 67778
Q ss_pred EEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCC-cccc
Q 001287 144 IKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGG-KDLQ 222 (1107)
Q Consensus 144 w~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~-~~~~ 222 (1107)
|+++. ++..+ +.... .+...+..++|+| +|++|+.++. +.|.+||+.+++...+... ....
T Consensus 96 ~d~~~--~~~~~----l~~~~---------~~~~~~~~~~~SP--dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~ 157 (723)
T 1xfd_A 96 SKIPH--GDPQS----LDPPE---------VSNAKLQYAGWGP--KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV 157 (723)
T ss_dssp EESSS--CCCEE----CCCTT---------CCSCCCSBCCBCS--STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTT
T ss_pred EECCC--CceEe----ccCCc---------cccccccccEECC--CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCc
Confidence 88764 33322 22111 1114488899999 7887888776 7999999998876544321 0000
Q ss_pred ccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcC-CcEEEEeCC
Q 001287 223 LKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID-GDILLWNTS 280 (1107)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~d-G~I~lWd~~ 280 (1107)
.. .+..+.+ -+++....+.+++|. |||++|++++.| +.+.+|++.
T Consensus 158 ~~-----------~g~~~~v-~~ee~~~~~~~~~~S-pDg~~la~~~~~~~~~~~~~~~ 203 (723)
T 1xfd_A 158 IY-----------NGLSDWL-YEEEILKTHIAHWWS-PDGTRLAYAAINDSRVPIMELP 203 (723)
T ss_dssp EE-----------EEECCHH-HHHTTSSSSEEEEEC-TTSSEEEEEEEECTTSCEEEEC
T ss_pred eE-----------Cccccee-EEEEeccCcceEEEC-CCCCEEEEEEECCCccceEEee
Confidence 00 0000000 000001245789985 999999988765 467777764
No 147
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.70 E-value=5.5e-15 Score=167.99 Aligned_cols=206 Identities=13% Similarity=0.101 Sum_probs=152.4
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEEC-------CCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEe-CCCcEEEE
Q 001287 32 YGIPATASILAFDHIQRLLAIATL-------DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT-NDNEIQVW 103 (1107)
Q Consensus 32 ~G~~~~i~~lafsp~~~~LA~Gs~-------dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s-~d~~I~vW 103 (1107)
..+...+..++|+|++++|++++. ++.|.+||....+.+........+..++|++++.+|+.++ .++.|.+|
T Consensus 37 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 37 KAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp EEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred hhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 344567889999999999999885 4689999997766654444455688999999998666555 47999999
Q ss_pred EcCCCeeeeeeccCC----------CeEEEEEecCCCEEEEEc--CCCcEEEEEeecCCCceeecceeecccccccccCC
Q 001287 104 SLESRSLACCLKWES----------NITAFSVISGSHFMYIGD--ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGF 171 (1107)
Q Consensus 104 Dl~s~~~~~~~~~~~----------~Vt~l~~~~~~~~l~~g~--~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~ 171 (1107)
|+.+++.+..+.... .+.+++++|+++++++++ .++.|++|+.+ +++.... ++.+.
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~--~~~~~~~---~~~~~------- 184 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG--NIKLKTA---IQNTG------- 184 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT--TTEEEEE---ECCCC-------
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC--CCceEEE---ecCCC-------
Confidence 999998877764422 278999999999888887 46777777654 4555432 33222
Q ss_pred CCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCc
Q 001287 172 PLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 251 (1107)
Q Consensus 172 ~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1107)
..+.+++|+| ++++++++..++.|.+||+.+++......... ......
T Consensus 185 -----~~~~~~~~s~--dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~-------------------------~~~~~~ 232 (353)
T 3vgz_A 185 -----KMSTGLALDS--EGKRLYTTNADGELITIDTADNKILSRKKLLD-------------------------DGKEHF 232 (353)
T ss_dssp -----TTCCCCEEET--TTTEEEEECTTSEEEEEETTTTEEEEEEECCC-------------------------SSSCCC
T ss_pred -----CccceEEECC--CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCC-------------------------CCCCcc
Confidence 3477889988 68889999999999999999998765432100 000345
Q ss_pred eeEEEeecCCCCEEEEEEc-CCcEEEEeCCCC
Q 001287 252 ISALCWASSSGSILAVGYI-DGDILLWNTSTT 282 (1107)
Q Consensus 252 Vtsl~w~spdg~~l~sg~~-dG~I~lWd~~~~ 282 (1107)
+.+++|. |+|+++++++. ++.|.+||..++
T Consensus 233 ~~~~~~s-~dg~~l~~~~~~~~~v~~~d~~~~ 263 (353)
T 3vgz_A 233 FINISLD-TARQRAFITDSKAAEVLVVDTRNG 263 (353)
T ss_dssp EEEEEEE-TTTTEEEEEESSSSEEEEEETTTC
T ss_pred cceEEEC-CCCCEEEEEeCCCCEEEEEECCCC
Confidence 7788986 99998877765 489999998644
No 148
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.69 E-value=3.8e-15 Score=168.00 Aligned_cols=194 Identities=13% Similarity=0.146 Sum_probs=131.3
Q ss_pred EEEcCCCC-EEEEEECCCcEEEEeCCCccee-eeCCCCCCEEEEEEEeCCCEEEEEeC-CCcEEEEEcCCCee-eeeecc
Q 001287 41 LAFDHIQR-LLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITN-DNEIQVWSLESRSL-ACCLKW 116 (1107)
Q Consensus 41 lafsp~~~-~LA~Gs~dg~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~-d~~I~vWDl~s~~~-~~~~~~ 116 (1107)
..|++++. ++++++.++.|++||....+.. ....+..++ .++|+|++.+|+.++. ++.|.+||+.++++ ...+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 34565554 4777788899999999765554 333445556 9999999998887776 88999999999987 655554
Q ss_pred CCCeEE-EEEecCCCEEEEEcCCC---cEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCE
Q 001287 117 ESNITA-FSVISGSHFMYIGDENG---LMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1107)
Q Consensus 117 ~~~Vt~-l~~~~~~~~l~~g~~dg---~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ 192 (1107)
...... ++|+|++++++++..++ .|++|+++. ++..+. ++.. ..+.+++|+| ++++
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~--~~~~~~---~~~~-------------~~~~~~~~sp--dg~~ 141 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK--NKFIST---IPIP-------------YDAVGIAISP--NGNG 141 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT--TEEEEE---EECC-------------TTEEEEEECT--TSSC
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCC--CCeEEE---EECC-------------CCccceEECC--CCCE
Confidence 444455 99999999999666653 899988754 454432 3321 4478999988 5664
Q ss_pred EEEE-ECCCe-EEEEEccCCEEE-EEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEE
Q 001287 193 VLIA-YENAL-VILWDVSEAQII-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1107)
Q Consensus 193 ll~~-~~dg~-V~vwdl~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~ 269 (1107)
++++ ..++. |.+|++.....+ ... .. .+. ....+.+++|. |+|+++++++
T Consensus 142 l~~~~~~~~~~i~~~~~~~~g~~~~~~-~~--~~~-----------------------~~~~~~~~~~s-pdg~~l~v~~ 194 (331)
T 3u4y_A 142 LILIDRSSANTVRRFKIDADGVLFDTG-QE--FIS-----------------------GGTRPFNITFT-PDGNFAFVAN 194 (331)
T ss_dssp EEEEEETTTTEEEEEEECTTCCEEEEE-EE--EEC-----------------------SSSSEEEEEEC-TTSSEEEEEE
T ss_pred EEEEecCCCceEEEEEECCCCcEeecC-Cc--ccc-----------------------CCCCccceEEC-CCCCEEEEEe
Confidence 5554 55577 999998764321 111 10 000 02346788875 9999765555
Q ss_pred -cCCcEEEEeCCCC
Q 001287 270 -IDGDILLWNTSTT 282 (1107)
Q Consensus 270 -~dG~I~lWd~~~~ 282 (1107)
.++.|.+||+.++
T Consensus 195 ~~~~~v~v~d~~~~ 208 (331)
T 3u4y_A 195 LIGNSIGILETQNP 208 (331)
T ss_dssp TTTTEEEEEECSST
T ss_pred CCCCeEEEEECCCC
Confidence 6899999998654
No 149
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.69 E-value=1.1e-15 Score=187.39 Aligned_cols=154 Identities=9% Similarity=0.037 Sum_probs=111.7
Q ss_pred CCCEEEEEEEeCCCEEEEEeC-CCcEEEEEcCCCeeeeeeccC-CCeEEEEEecCCCEEEEEcC---CCcEEEEEeec--
Q 001287 76 QLPYKNLEFLQNQGFLISITN-DNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDE---NGLMSVIKYDA-- 148 (1107)
Q Consensus 76 ~~~V~~l~fs~d~~~L~S~s~-d~~I~vWDl~s~~~~~~~~~~-~~Vt~l~~~~~~~~l~~g~~---dg~V~vw~~d~-- 148 (1107)
..+|.+++|+|||.+|++++. |++++||++.+++......+. ..+.+++|+|+ +.+++++. +....+|.++.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 558999999999999999987 999999999888776666666 58999999999 78887775 45667888776
Q ss_pred CCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCcccccccccc
Q 001287 149 DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVV 228 (1107)
Q Consensus 149 ~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~ 228 (1107)
..... + +... ..+...+|+|..++. +++...++.+.+||+.+++...+..+
T Consensus 100 ~g~~~-~----l~~~-------------~~~~~~~~s~dg~~~-~~~s~~~~~~~l~d~~~g~~~~l~~~---------- 150 (582)
T 3o4h_A 100 PGEEQ-R----LEAV-------------KPMRILSGVDTGEAV-VFTGATEDRVALYALDGGGLRELARL---------- 150 (582)
T ss_dssp TTCCE-E----CTTS-------------CSBEEEEEEECSSCE-EEEEECSSCEEEEEEETTEEEEEEEE----------
T ss_pred CCccc-c----ccCC-------------CCceeeeeCCCCCeE-EEEecCCCCceEEEccCCcEEEeecC----------
Confidence 33222 1 2211 224456777753443 44444555556999999987665533
Q ss_pred CCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcC----CcEEEEeCCCC
Q 001287 229 DSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID----GDILLWNTSTT 282 (1107)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~d----G~I~lWd~~~~ 282 (1107)
.. .+++|. |||++|++++.+ +.|++||+.++
T Consensus 151 --------------------~~--~~~~~s-pDG~~la~~~~~~~~~~~i~~~d~~~g 185 (582)
T 3o4h_A 151 --------------------PG--FGFVSD-IRGDLIAGLGFFGGGRVSLFTSNLSSG 185 (582)
T ss_dssp --------------------SS--CEEEEE-EETTEEEEEEEEETTEEEEEEEETTTC
T ss_pred --------------------CC--ceEEEC-CCCCEEEEEEEcCCCCeEEEEEcCCCC
Confidence 22 567775 999999988877 77899988654
No 150
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.68 E-value=4.2e-15 Score=163.64 Aligned_cols=202 Identities=9% Similarity=0.047 Sum_probs=151.1
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC-cceeee-CCC-CCCEEEEEEEeCCCEEEEEeC--CCcEEEEE
Q 001287 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDG-IEGLLI-SPS-QLPYKNLEFLQNQGFLISITN--DNEIQVWS 104 (1107)
Q Consensus 30 ~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~-~~~~~~-~~h-~~~V~~l~fs~d~~~L~S~s~--d~~I~vWD 104 (1107)
...+++..+.+++|+|++++||+++ ++.|++|+..+ .+.... ..| ...|.+++|+|++.+|++++. ++.+.||.
T Consensus 36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~ 114 (297)
T 2ojh_A 36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYL 114 (297)
T ss_dssp EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEE
T ss_pred eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEE
Confidence 3455688999999999999999987 78999999976 544433 334 468999999999999999993 34555555
Q ss_pred --cCCCeeeeeeccCCCeEEEEEecCCCEEE-EEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEE
Q 001287 105 --LESRSLACCLKWESNITAFSVISGSHFMY-IGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVG 181 (1107)
Q Consensus 105 --l~s~~~~~~~~~~~~Vt~l~~~~~~~~l~-~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~ 181 (1107)
+.++.. ..+.....+.+++|+|++++|+ ++..++.++||+++...+.... +..+. ..+.+
T Consensus 115 ~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~------------~~~~~ 177 (297)
T 2ojh_A 115 LPSTGGTP-RLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR----LTHGE------------GRNDG 177 (297)
T ss_dssp EETTCCCC-EECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE----CCCSS------------SCEEE
T ss_pred EECCCCce-EEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE----cccCC------------Ccccc
Confidence 455543 3344444589999999999887 7788999999999876555442 33333 67999
Q ss_pred EEcccCCCCCEEEEEE-CCCeEEEEEcc--CCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEee
Q 001287 182 VLPHPNSSGNRVLIAY-ENALVILWDVS--EAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA 258 (1107)
Q Consensus 182 v~f~P~~~~~~ll~~~-~dg~V~vwdl~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~ 258 (1107)
+.|+| ++..|++++ .++.+.+|++. .+....+..+ ...+.+++|.
T Consensus 178 ~~~s~--dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~s 225 (297)
T 2ojh_A 178 PDYSP--DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDS------------------------------AYGDWFPHPS 225 (297)
T ss_dssp EEECT--TSSEEEEEECTTSSCEEEEEETTSSCEEECCCC------------------------------SEEEEEEEEC
T ss_pred ceECC--CCCEEEEEecCCCCccEEEECCCCCCcEEEecC------------------------------CcccCCeEEC
Confidence 99988 677777666 58899999876 3344333333 4568889985
Q ss_pred cCCCCEEEEEEcC-----------CcEEEEeCCCC
Q 001287 259 SSSGSILAVGYID-----------GDILLWNTSTT 282 (1107)
Q Consensus 259 spdg~~l~sg~~d-----------G~I~lWd~~~~ 282 (1107)
|+|++|++++.+ +.|.+||+.++
T Consensus 226 -~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 259 (297)
T 2ojh_A 226 -PSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG 259 (297)
T ss_dssp -TTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred -CCCCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence 999999988876 56999998765
No 151
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.66 E-value=1.4e-13 Score=157.40 Aligned_cols=138 Identities=10% Similarity=0.025 Sum_probs=92.8
Q ss_pred ccCCCCcEEEEEe-cCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccC--ceEEEEEec
Q 001287 490 KCHSVDRVYLAGY-HDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF--GLVYIYNLN 566 (1107)
Q Consensus 490 ~~s~~~~~laTgs-~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~d--g~V~vw~~~ 566 (1107)
+++|+++++++++ .+++|++||+..+.+..+..+. ....+...+.+++|+|||++|++++.+ +.|.+|+++
T Consensus 217 ~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~------~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 217 IFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVA------ADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp EECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEE------SCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred EEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEe------cCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence 5778887665554 7899999999877655333222 122344567899999999998776654 899999997
Q ss_pred CCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEe-CCCeEEEE--EcCCCeEEEEeec
Q 001287 567 GSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGF-ECGRVAVL--DMNLLSVLFFTDD 643 (1107)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs-~dg~V~iw--d~~~~~~~~~~~~ 643 (1107)
..... +..+..+.. ...+.+++|+|+|++|++++ .++.|.+| |..++.+.....
T Consensus 291 ~~~g~---------------------~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~- 347 (361)
T 3scy_A 291 ETNGT---------------------LTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKK- 347 (361)
T ss_dssp TTTCC---------------------EEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSC-
T ss_pred CCCCc---------------------EEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecce-
Confidence 43211 112222333 45688999999999888887 67899996 555676652211
Q ss_pred CCCCCCceEEEEEe
Q 001287 644 ISGSSSPIISMTWT 657 (1107)
Q Consensus 644 ~~~h~~~V~~l~fs 657 (1107)
..+...+.++.|.
T Consensus 348 -~~~~~~p~~v~~~ 360 (361)
T 3scy_A 348 -DIKVDKPVCLKFV 360 (361)
T ss_dssp -CEECSSEEEEEEE
T ss_pred -eeeCCCCeEEEEc
Confidence 1244568888886
No 152
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.66 E-value=7.6e-15 Score=165.43 Aligned_cols=147 Identities=5% Similarity=-0.030 Sum_probs=111.1
Q ss_pred CEEEEEECCCcEEEEeCCCcceeeeCCCCC---CEEEEEEEeCCCEEEEE-eCCCcEEEEEcCCCeeeeeeccCC-----
Q 001287 48 RLLAIATLDGRIKVIGGDGIEGLLISPSQL---PYKNLEFLQNQGFLISI-TNDNEIQVWSLESRSLACCLKWES----- 118 (1107)
Q Consensus 48 ~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~---~V~~l~fs~d~~~L~S~-s~d~~I~vWDl~s~~~~~~~~~~~----- 118 (1107)
.+|++++.++.|++||....+.+....... .+..++|+|++.+|+.+ +.++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 578999999999999997766553333333 58899999999876554 457899999999998887665433
Q ss_pred -CeEEEEEecCCCEEEEEc------------CCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcc
Q 001287 119 -NITAFSVISGSHFMYIGD------------ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1107)
Q Consensus 119 -~Vt~l~~~~~~~~l~~g~------------~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~ 185 (1107)
.+.+++|+|+++++++++ .++.|++|+.+. ++.... ++.. ..+.+++|+
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~---~~~~-------------~~~~~~~~s 143 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET--LSRRKA---FEAP-------------RQITMLAWA 143 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT--TEEEEE---EECC-------------SSCCCEEEC
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCC--CcEEEE---EeCC-------------CCcceeEEC
Confidence 678899999999999986 578888888653 444432 2211 347788898
Q ss_pred cCCCCCEEEEEECCCeEEEEEccCCEEEEEe
Q 001287 186 PNSSGNRVLIAYENALVILWDVSEAQIIFVG 216 (1107)
Q Consensus 186 P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~ 216 (1107)
| ++++|+++ ++.|.+||+.+++.....
T Consensus 144 ~--dg~~l~~~--~~~i~~~d~~~~~~~~~~ 170 (337)
T 1pby_B 144 R--DGSKLYGL--GRDLHVMDPEAGTLVEDK 170 (337)
T ss_dssp T--TSSCEEEE--SSSEEEEETTTTEEEEEE
T ss_pred C--CCCEEEEe--CCeEEEEECCCCcEeeee
Confidence 8 67767777 788999999999876544
No 153
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.66 E-value=7.9e-15 Score=179.60 Aligned_cols=192 Identities=10% Similarity=0.062 Sum_probs=140.2
Q ss_pred CCeEEEEEcCCCCEEEEEEC-CCcEEEEeCCCcceeeeCCCC-CCEEEEEEEeCCCEEEEEeC---CCcEEEEEcCC---
Q 001287 36 ATASILAFDHIQRLLAIATL-DGRIKVIGGDGIEGLLISPSQ-LPYKNLEFLQNQGFLISITN---DNEIQVWSLES--- 107 (1107)
Q Consensus 36 ~~i~~lafsp~~~~LA~Gs~-dg~I~iw~~~~~~~~~~~~h~-~~V~~l~fs~d~~~L~S~s~---d~~I~vWDl~s--- 107 (1107)
..|.+++|+|||+.||+++. ||.++||++++.+...+..|. ..|..++|+|| ..+++++. +....+|.+..
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~ 100 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRP 100 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTST
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCC
Confidence 35899999999999999887 999999999777776666666 68999999999 77777765 45566665533
Q ss_pred CeeeeeeccCCCeEEEEEecCCCE-EEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEccc
Q 001287 108 RSLACCLKWESNITAFSVISGSHF-MYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1107)
Q Consensus 108 ~~~~~~~~~~~~Vt~l~~~~~~~~-l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P 186 (1107)
+... .+.....+...+|+|+++. +++...++.+.+|+++. +++.+ +..+. . .+++|+|
T Consensus 101 g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~--g~~~~----l~~~~------------~--~~~~~sp 159 (582)
T 3o4h_A 101 GEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDG--GGLRE----LARLP------------G--FGFVSDI 159 (582)
T ss_dssp TCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEET--TEEEE----EEEES------------S--CEEEEEE
T ss_pred Cccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccC--CcEEE----eecCC------------C--ceEEECC
Confidence 2222 3333334556688888753 33444445556998874 44443 22221 2 7888988
Q ss_pred CCCCCEEEEEECC----CeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCC
Q 001287 187 NSSGNRVLIAYEN----ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1107)
Q Consensus 187 ~~~~~~ll~~~~d----g~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg 262 (1107)
+|++|+.++.+ +.|.+||+.+++...+.++ ...+.+++|. |||
T Consensus 160 --DG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~------------------------------~~~~~~~~~S-pDG 206 (582)
T 3o4h_A 160 --RGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSG------------------------------EGSFSSASIS-PGM 206 (582)
T ss_dssp --ETTEEEEEEEEETTEEEEEEEETTTCCCEEECCS------------------------------SCEEEEEEEC-TTS
T ss_pred --CCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecC------------------------------CCccccceEC-CCC
Confidence 79988888777 7899999999887766655 5678889985 999
Q ss_pred CEEEEEEcCC--cEEEEeCCCC
Q 001287 263 SILAVGYIDG--DILLWNTSTT 282 (1107)
Q Consensus 263 ~~l~sg~~dG--~I~lWd~~~~ 282 (1107)
+.|+++..+| .|++||+.++
T Consensus 207 ~~l~~~~~~~~~~i~~~d~~~~ 228 (582)
T 3o4h_A 207 KVTAGLETAREARLVTVDPRDG 228 (582)
T ss_dssp CEEEEEECSSCEEEEEECTTTC
T ss_pred CEEEEccCCCeeEEEEEcCCCC
Confidence 9999888888 8999998654
No 154
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.66 E-value=6.8e-14 Score=159.03 Aligned_cols=145 Identities=14% Similarity=0.179 Sum_probs=93.2
Q ss_pred CCcEEEEEcC--CCeee--eeeccCCCeEEEEEecCCCEEEEEcC---CCcEEEEEeecCCCceeecceeeccccccccc
Q 001287 97 DNEIQVWSLE--SRSLA--CCLKWESNITAFSVISGSHFMYIGDE---NGLMSVIKYDADEGKLFQLPYNISADALSEKA 169 (1107)
Q Consensus 97 d~~I~vWDl~--s~~~~--~~~~~~~~Vt~l~~~~~~~~l~~g~~---dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~ 169 (1107)
++.|.+|+++ ++++. ....+...+..++|+|+++ |++++. ++.|++|+++. +.+... ..+..+.
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~--g~~~~~-~~~~~~~----- 85 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDG--QTAHKL-NTVVAPG----- 85 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEET--TEEEEE-EEEEEES-----
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecC--CcEEEe-eeeecCC-----
Confidence 4567777764 45543 3345567788999999999 666654 68899999864 343321 1122222
Q ss_pred CCCCCCCCCeEEEEcccCCCCCEEEEEE-CCCeEEEEEcc-CCEEEEE--eCCccccccccccCCCCCCCCccccCCCCC
Q 001287 170 GFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVS-EAQIIFV--GGGKDLQLKDGVVDSPSEGDSTFLEGISEH 245 (1107)
Q Consensus 170 ~~~~~~~~~V~~v~f~P~~~~~~ll~~~-~dg~V~vwdl~-~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1107)
..+..++|+| ++++|+++. .++.|.+|++. .+..... ..+. ...+. .
T Consensus 86 -------~~p~~~a~sp--dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~------------~~~p~--------~ 136 (347)
T 3hfq_A 86 -------TPPAYVAVDE--ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHS------------GHGPR--------P 136 (347)
T ss_dssp -------CCCSEEEEET--TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECC------------CCCSS--------T
T ss_pred -------CCCEEEEECC--CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecC------------CCCCC--------c
Confidence 5688999988 788788877 78999999996 3333221 1110 00000 0
Q ss_pred CCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCC
Q 001287 246 QPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 246 ~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~ 280 (1107)
......+.+++|. |+|+.+++...++.|.+|++.
T Consensus 137 ~~~~~~~~~~~~s-pdg~l~v~~~~~~~v~~~~~~ 170 (347)
T 3hfq_A 137 EQDGSHIHYTDLT-PDNRLAVIDLGSDKVYVYNVS 170 (347)
T ss_dssp TCSSCCEEEEEEC-TTSCEEEEETTTTEEEEEEEC
T ss_pred cccCCCceEEEEC-CCCcEEEEeCCCCEEEEEEEC
Confidence 0114468889985 999966666678899999986
No 155
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.65 E-value=2.2e-14 Score=162.66 Aligned_cols=157 Identities=9% Similarity=0.007 Sum_probs=113.8
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCC--CEEEEEEEeCCCEEEEE-eCCCcEEEEEcCCCeeeeeecc
Q 001287 40 ILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQL--PYKNLEFLQNQGFLISI-TNDNEIQVWSLESRSLACCLKW 116 (1107)
Q Consensus 40 ~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~--~V~~l~fs~d~~~L~S~-s~d~~I~vWDl~s~~~~~~~~~ 116 (1107)
.++++++++++++++.++.|++||....+.+....... .+..++|+|++.+++.+ ..++.|.+||+.+++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 35788999999999999999999997665543322223 67899999999876544 4688999999999988776653
Q ss_pred CC-------CeEEEEEecCCCEEEEEcCC------------CcEEEEEeecCCCceeecceeecccccccccCCCCCCCC
Q 001287 117 ES-------NITAFSVISGSHFMYIGDEN------------GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQ 177 (1107)
Q Consensus 117 ~~-------~Vt~l~~~~~~~~l~~g~~d------------g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~ 177 (1107)
.. .+.+++|+|+++++++++.+ +.|++|++.. ++.......+.. ..
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~--~~~~~~~~~~~~-------------~~ 148 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD--GLEAKPVRTFPM-------------PR 148 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG--GGGBCCSEEEEC-------------CS
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCC--ccccceeeeccC-------------CC
Confidence 32 37899999999999999865 8898888764 222211011111 13
Q ss_pred CeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEe
Q 001287 178 PVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG 216 (1107)
Q Consensus 178 ~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~ 216 (1107)
.+.+++|+| +++ +++++ +.|.+||+.+++.....
T Consensus 149 ~~~~~~~s~--dg~-l~~~~--~~i~~~d~~~~~~~~~~ 182 (349)
T 1jmx_B 149 QVYLMRAAD--DGS-LYVAG--PDIYKMDVKTGKYTVAL 182 (349)
T ss_dssp SCCCEEECT--TSC-EEEES--SSEEEECTTTCCEEEEE
T ss_pred cccceeECC--CCc-EEEcc--CcEEEEeCCCCceeccc
Confidence 478889988 677 66653 34999999988776543
No 156
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.65 E-value=1.4e-15 Score=178.60 Aligned_cols=203 Identities=13% Similarity=0.146 Sum_probs=147.7
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCc-----------cee-----eeCCCCCCEEEEEEEeCCCEEE----EEe
Q 001287 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGI-----------EGL-----LISPSQLPYKNLEFLQNQGFLI----SIT 95 (1107)
Q Consensus 36 ~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~-----------~~~-----~~~~h~~~V~~l~fs~d~~~L~----S~s 95 (1107)
..++++++++++.+||+|+.|| |+||+.... ... ....|..+|.+++|++++.+|+ +++
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 3588999999999999999988 889864211 111 1234677899999999999999 788
Q ss_pred CCCcEEEEEcCCC--------eee---eee-ccCCCeEEEEEecC-CCEEEEEcCCCcEEEEEeecCCCceeecceeecc
Q 001287 96 NDNEIQVWSLESR--------SLA---CCL-KWESNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISA 162 (1107)
Q Consensus 96 ~d~~I~vWDl~s~--------~~~---~~~-~~~~~Vt~l~~~~~-~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~ 162 (1107)
.|+.|+|||+.++ +.+ ..+ .|...|++++|+|+ +.+|++|+.||+|++|++... ... .....
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~--~~~---~~~~~ 190 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET--VKV---CATLP 190 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS--EEE---EEEEC
T ss_pred CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC--cce---eeccC
Confidence 8999999998765 222 222 47789999999998 789999999999999998753 222 22333
Q ss_pred cccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCC
Q 001287 163 DALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGI 242 (1107)
Q Consensus 163 ~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (1107)
|. ..|.+++|+| ++++|++|+.||.|++||++......+..+...
T Consensus 191 ~~------------~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~--------------------- 235 (434)
T 2oit_A 191 ST------------VAVTSVCWSP--KGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFY--------------------- 235 (434)
T ss_dssp GG------------GCEEEEEECT--TSSCEEEEETTSCEEEECTTCCEEEEECCCTTC---------------------
T ss_pred CC------------CceeEEEEcC--CCCEEEEEcCCCcEEEEccCCcccccccCCccc---------------------
Confidence 44 6799999998 688899999999999999983333333322000
Q ss_pred CCCCCCCCceeEEEeecCCCCEEEEEE-cCC------cEEEEeCCCC
Q 001287 243 SEHQPEEKEISALCWASSSGSILAVGY-IDG------DILLWNTSTT 282 (1107)
Q Consensus 243 ~~~~~~~~~Vtsl~w~spdg~~l~sg~-~dG------~I~lWd~~~~ 282 (1107)
...+...|.+++|. +++.++++.. .+| .+++|++...
T Consensus 236 --~~~~~~~v~~v~w~-~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 236 --ESDHPVRVLDVLWI-GTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp --CTTSCEEEEEEEEE-ETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred --CCCCceeEEEEEEe-cCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 00113479999997 7777665433 343 2899998754
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.63 E-value=8.6e-15 Score=184.16 Aligned_cols=163 Identities=15% Similarity=0.258 Sum_probs=106.3
Q ss_pred EEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeeccCC----CeEEEEEecCCCEEEEEcC---------CCcEEEEEee
Q 001287 81 NLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWES----NITAFSVISGSHFMYIGDE---------NGLMSVIKYD 147 (1107)
Q Consensus 81 ~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~----~Vt~l~~~~~~~~l~~g~~---------dg~V~vw~~d 147 (1107)
.++|+||+. ++..+.|++|.+||+.+++....+.+.. .|.+++|+|++++|+.++. ++.|++|+++
T Consensus 20 ~~~~s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQE-YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSE-EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCe-EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 789999985 5555579999999999998776664432 3899999999999998876 6888888865
Q ss_pred cCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEe--CCccccccc
Q 001287 148 ADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG--GGKDLQLKD 225 (1107)
Q Consensus 148 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~--g~~~~~~~~ 225 (1107)
. ++.... ..+. ..+..++|+| +|++|+.+. ++.|++||+.+++...+. ++....+.
T Consensus 99 ~--g~~~~~-~~l~---------------~~~~~~~~SP--DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~- 156 (719)
T 1z68_A 99 N--GEFVRG-NELP---------------RPIQYLCWSP--VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFN- 156 (719)
T ss_dssp T--TEECCS-SCCC---------------SSBCCEEECS--STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEE-
T ss_pred C--Cccccc-eecC---------------cccccceECC--CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEc-
Confidence 3 444110 1121 3478899999 788788775 789999999888765432 11000000
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcC-CcEEEEeC
Q 001287 226 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID-GDILLWNT 279 (1107)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~d-G~I~lWd~ 279 (1107)
+... .+- +++-.....+++|. |||++|++++.| +.+.+|.+
T Consensus 157 -------g~~~----~v~-~ee~~~~~~~~~wS-PDG~~la~~~~d~~~~~~~~~ 198 (719)
T 1z68_A 157 -------GIPD----WVY-EEEMLATKYALWWS-PNGKFLAYAEFNDTDIPVIAY 198 (719)
T ss_dssp -------SSCC----HHH-HHHTTCSSCCEEEC-TTSSEEEEEEEECTTSCEEEE
T ss_pred -------cccc----cee-eeecccCcccEEEC-CCCCEEEEEEECCCCCceEEe
Confidence 0000 000 00001223578885 999999998865 44555544
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.61 E-value=1.3e-12 Score=149.42 Aligned_cols=166 Identities=9% Similarity=0.024 Sum_probs=108.9
Q ss_pred ccCCCCc-EEEEEecCCcEEEEeCCCCc-------eeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEec-cCceE
Q 001287 490 KCHSVDR-VYLAGYHDGSVRIWDATYPV-------FKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGN-EFGLV 560 (1107)
Q Consensus 490 ~~s~~~~-~laTgs~DgtIriWd~~~~~-------l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~-~dg~V 560 (1107)
+++|+++ +++++..++.|++|++.... +..... .... ...+...+..++|+||+++|++++ .++.|
T Consensus 161 ~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~----~~~~-~~~~~~~~~~~~~spdg~~l~v~~~~~~~v 235 (361)
T 3scy_A 161 RITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGT----PEAF-KVAPGSGPRHLIFNSDGKFAYLINEIGGTV 235 (361)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEE----EEEE-ECCTTCCEEEEEECTTSSEEEEEETTTCEE
T ss_pred EECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccc----ccce-ecCCCCCCeEEEEcCCCCEEEEEcCCCCeE
Confidence 6788887 45555668999999887543 221100 0001 123345678999999999887777 68999
Q ss_pred EEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEe---ecCcCEEEEEEcCCCCEEEEEeC--CCeEEEEEcC--
Q 001287 561 YIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFS---LVNSPVRALQFTSSGAKLAVGFE--CGRVAVLDMN-- 633 (1107)
Q Consensus 561 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~h~~~Vt~la~sp~~~~la~Gs~--dg~V~iwd~~-- 633 (1107)
.+|++..... ..+..+. .+.....+++|+|||++|+++.. ++.|.+|++.
T Consensus 236 ~v~~~~~g~~-----------------------~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~ 292 (361)
T 3scy_A 236 IAFRYADGML-----------------------DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDET 292 (361)
T ss_dssp EEEEEETTEE-----------------------EEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTT
T ss_pred EEEEecCCce-----------------------EEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCC
Confidence 9999985311 0111111 22345689999999998877665 4899999995
Q ss_pred CCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEc-CCceEEE--EeCCCcceecC
Q 001287 634 LLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLF-KDAKISI--VGGSSENMISS 707 (1107)
Q Consensus 634 ~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s-~Dg~v~v--~d~~~g~~i~~ 707 (1107)
++..... ..+.. ...+..++|+ |++.+|+++. .++.|.+ ||.++|++...
T Consensus 293 ~g~~~~~-~~~~~-g~~~~~~~~s----------------------pdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 293 NGTLTKV-GYQLT-GIHPRNFIIT----------------------PNGKYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp TCCEEEE-EEEEC-SSCCCEEEEC----------------------TTSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred CCcEEEe-eEecC-CCCCceEEEC----------------------CCCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 4443211 12222 4567788888 6688788877 6788888 57778887543
No 159
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.58 E-value=8.9e-13 Score=151.11 Aligned_cols=170 Identities=8% Similarity=-0.048 Sum_probs=106.6
Q ss_pred ccCCCCcEEEEEe-cCCcEEEEeCC-CCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEecc-CceEEEEEec
Q 001287 490 KCHSVDRVYLAGY-HDGSVRIWDAT-YPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNE-FGLVYIYNLN 566 (1107)
Q Consensus 490 ~~s~~~~~laTgs-~DgtIriWd~~-~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~-dg~V~vw~~~ 566 (1107)
+++|+++.++++. .+++|++||+. ++.+..+.. ..+..|...+..++|+|||++|++++. ++.|.+|+++
T Consensus 151 ~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~-------~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~ 223 (365)
T 1jof_A 151 VFDPTETYLYSADLTANKLWTHRKLASGEVELVGS-------VDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEE-------EECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeee-------EecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEe
Confidence 5778887666654 47899999998 666542221 112224457899999999999888775 7899999987
Q ss_pred CCCCCccceeeccCcCcceecccCCcceeEEEE----eecCc------CEEEEE-EcCCCCEEEEEeCCC------eEEE
Q 001287 567 GSLDAKNFLFVLETKSEVHALPEGKISLCRAVF----SLVNS------PVRALQ-FTSSGAKLAVGFECG------RVAV 629 (1107)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~h~~------~Vt~la-~sp~~~~la~Gs~dg------~V~i 629 (1107)
........ . .+.+..+ .+|.. .+..++ |+|||++|++++.+. .|.+
T Consensus 224 ~~~g~~~~--~---------------~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v 286 (365)
T 1jof_A 224 PATHMPVY--T---------------HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAG 286 (365)
T ss_dssp TTTCCEEE--E---------------EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEE
T ss_pred CCCCcEEE--c---------------cceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEE
Confidence 53211000 0 0000000 11222 588999 999999988876433 8999
Q ss_pred EEcC-CCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCC-ceEEEEeCCCc
Q 001287 630 LDMN-LLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKD-AKISIVGGSSE 702 (1107)
Q Consensus 630 wd~~-~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~D-g~v~v~d~~~g 702 (1107)
|++. ++.+.........+...+..++|++... ++.+|+++..+ +.|.+|+.+..
T Consensus 287 ~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~-------------------dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 287 FKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPW-------------------SDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEECTTSCEEEEEEEEECSSCCTTCCCEEECTT-------------------CTTEEEEECSSSCEEEEEEEETT
T ss_pred EEECCCCCEEEeeeeeecCCCCcccceecCCCc-------------------CCCEEEEEEcCCCeEEEEEEchh
Confidence 9996 5554421111122344455677773100 47788888765 89999987654
No 160
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.57 E-value=1e-12 Score=150.62 Aligned_cols=191 Identities=14% Similarity=0.103 Sum_probs=125.4
Q ss_pred EEEEEECC--CcEEEEeCC--Ccceeee----CCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcC-CCeeeeeecc--C
Q 001287 49 LLAIATLD--GRIKVIGGD--GIEGLLI----SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE-SRSLACCLKW--E 117 (1107)
Q Consensus 49 ~LA~Gs~d--g~I~iw~~~--~~~~~~~----~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~-s~~~~~~~~~--~ 117 (1107)
+|.+|+.. +.|.+|.++ ....... .++...+..++|+|++.+|++++.+ .|.+||+. ++++.....+ .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 46677654 568887753 2222211 1344578899999999999999888 99999997 7776543332 2
Q ss_pred CCeEEEEEecCCCE--EEEEc-------------CCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEE
Q 001287 118 SNITAFSVISGSHF--MYIGD-------------ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1107)
Q Consensus 118 ~~Vt~l~~~~~~~~--l~~g~-------------~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v 182 (1107)
+.+.+++++|++++ +++++ .+|.+.+|+++.. +++......+... ....+.++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~-g~~~~~~~~~~~~-----------~~~~~~~~ 150 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSET-GKLEKNVQNYEYQ-----------ENTGIHGM 150 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTT-CCEEEEEEEEECC-----------TTCCEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCC-CcCcceEeeEEeC-----------CCCcceEE
Confidence 44667899999994 55554 6899999999753 3443210011100 11568999
Q ss_pred EcccCCCCCEEEEEEC-CCeEEEEEcc-CCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecC
Q 001287 183 LPHPNSSGNRVLIAYE-NALVILWDVS-EAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1107)
Q Consensus 183 ~f~P~~~~~~ll~~~~-dg~V~vwdl~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp 260 (1107)
+|+| +|++|+++.. ++.|.+||+. +++....... .. . .+...+..++|. |
T Consensus 151 ~~sp--dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~---~~----~------------------~~g~~p~~~~~s-p 202 (365)
T 1jof_A 151 VFDP--TETYLYSADLTANKLWTHRKLASGEVELVGSV---DA----P------------------DPGDHPRWVAMH-P 202 (365)
T ss_dssp EECT--TSSEEEEEETTTTEEEEEEECTTSCEEEEEEE---EC----S------------------STTCCEEEEEEC-T
T ss_pred EECC--CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeE---ec----C------------------CCCCCCCEeEEC-C
Confidence 9988 7887777664 6799999998 6665322110 00 0 002347788875 9
Q ss_pred CCCEEEEEEc-CCcEEEEeCC
Q 001287 261 SGSILAVGYI-DGDILLWNTS 280 (1107)
Q Consensus 261 dg~~l~sg~~-dG~I~lWd~~ 280 (1107)
||++|+++.. ++.|.+|++.
T Consensus 203 dg~~l~v~~~~~~~v~v~~~~ 223 (365)
T 1jof_A 203 TGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp TSSEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEEECCCCeEEEEEEe
Confidence 9999888775 6889998774
No 161
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.57 E-value=1.7e-12 Score=163.44 Aligned_cols=166 Identities=13% Similarity=0.043 Sum_probs=110.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcc-eeeeCCCCCC-----EEEEEEEeCCCEEEEEeCC---------
Q 001287 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLP-----YKNLEFLQNQGFLISITND--------- 97 (1107)
Q Consensus 33 G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~-~~~~~~h~~~-----V~~l~fs~d~~~L~S~s~d--------- 97 (1107)
+.......++|+|++++|+++ ||.|++|+..+.+ ..++..|... ...++|||||.+|+..+.+
T Consensus 14 ~~~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~ 91 (740)
T 4a5s_A 14 TYRLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT 91 (740)
T ss_dssp CSCCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred cccccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccc
Confidence 334456689999999999997 9999999996554 4455555432 3448999999999999876
Q ss_pred CcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCC----
Q 001287 98 NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPL---- 173 (1107)
Q Consensus 98 ~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~---- 173 (1107)
+.+.+||+.++++.....+.+.+...+|+|++++|+.+ .++.|++|+.+. +...+. +..++......+.+.
T Consensus 92 ~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~--~~~~~l--t~~g~~~~~~~g~~~~v~~ 166 (740)
T 4a5s_A 92 ASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPN--LPSYRI--TWTGKEDIIYNGITDWVYE 166 (740)
T ss_dssp EEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTT--SCCEEC--CSCCBTTTEEESBCCHHHH
T ss_pred eEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCC--CceEEE--cCCCCccceecCccccccc
Confidence 56779999999877666677889999999999999888 467888887654 343331 111111000000000
Q ss_pred -CCCCCeEEEEcccCCCCCEEEEEECCCe-EEEEEc
Q 001287 174 -LSHQPVVGVLPHPNSSGNRVLIAYENAL-VILWDV 207 (1107)
Q Consensus 174 -~~~~~V~~v~f~P~~~~~~ll~~~~dg~-V~vwdl 207 (1107)
.-.....++.|+| +|++|+.+..|.. +.+|++
T Consensus 167 ee~~~~~~~~~wSp--Dg~~la~~~~d~~~v~~~~~ 200 (740)
T 4a5s_A 167 EEVFSAYSALWWSP--NGTFLAYAQFNDTEVPLIEY 200 (740)
T ss_dssp HHTSSSSBCEEECT--TSSEEEEEEEECTTCCEEEE
T ss_pred chhcCCCcceEECC--CCCEEEEEEEcccCCceEEE
Confidence 0002234589988 7888887764432 444443
No 162
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.56 E-value=5.4e-13 Score=151.08 Aligned_cols=155 Identities=14% Similarity=0.100 Sum_probs=108.6
Q ss_pred EEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeeccCC--CeEEEEEecCCCEEEEE-cCCCcEEEEEeecCCCceeecc
Q 001287 81 NLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWES--NITAFSVISGSHFMYIG-DENGLMSVIKYDADEGKLFQLP 157 (1107)
Q Consensus 81 ~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~--~Vt~l~~~~~~~~l~~g-~~dg~V~vw~~d~~~~~l~~~~ 157 (1107)
.++|++++.++++++.++.|.+||+.+++.+..+.... .+..++|+|++++++++ ..++.|++|+.+. ++....
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t--~~~~~~- 80 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT--CKNTFH- 80 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT--TEEEEE-
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCC--CcEEEE-
Confidence 34677888889999999999999999999888776555 68899999999877655 5688888887653 444422
Q ss_pred eeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECC------------CeEEEEEccCCEEE---EEeCCcccc
Q 001287 158 YNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN------------ALVILWDVSEAQII---FVGGGKDLQ 222 (1107)
Q Consensus 158 ~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~d------------g~V~vwdl~~~~~~---~~~g~~~~~ 222 (1107)
+.+.... ......+.+++|+| ++++|+++..+ +.|.+||+.+++.. ....+
T Consensus 81 ~~~~~~~--------~~~~~~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---- 146 (349)
T 1jmx_B 81 ANLSSVP--------GEVGRSMYSFAISP--DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM---- 146 (349)
T ss_dssp EESCCST--------TEEEECSSCEEECT--TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC----
T ss_pred EEccccc--------ccccccccceEECC--CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC----
Confidence 1111100 00013377889988 78888888865 89999999885321 11111
Q ss_pred ccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 223 LKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
...+.+++|. |+|+ ++++ ++.|.+||..++
T Consensus 147 --------------------------~~~~~~~~~s-~dg~-l~~~--~~~i~~~d~~~~ 176 (349)
T 1jmx_B 147 --------------------------PRQVYLMRAA-DDGS-LYVA--GPDIYKMDVKTG 176 (349)
T ss_dssp --------------------------CSSCCCEEEC-TTSC-EEEE--SSSEEEECTTTC
T ss_pred --------------------------CCcccceeEC-CCCc-EEEc--cCcEEEEeCCCC
Confidence 3357788875 9999 6664 445999998654
No 163
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.55 E-value=6.5e-14 Score=164.33 Aligned_cols=174 Identities=12% Similarity=0.149 Sum_probs=127.0
Q ss_pred CCccccCCCCcEEEEEecCCcEEEEeCCCCce--------eEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEE----E
Q 001287 486 VPITKCHSVDRVYLAGYHDGSVRIWDATYPVF--------KLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLA----V 553 (1107)
Q Consensus 486 ~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l--------~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~La----s 553 (1107)
.+++++++++.++++|+.|| |++|+...... ..+.... . ...-.|...|++++|+|++++|+ +
T Consensus 39 ~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 39 SSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKV-Q---GLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECC-C---CEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred ccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccC-c---cccccCCCcccEEEEcCCCCEEEEEEec
Confidence 46678899999999999998 99987532110 0000000 0 01124567899999999999999 7
Q ss_pred eccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCC-CCEEEEEeCCCeEEEEEc
Q 001287 554 GNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS-GAKLAVGFECGRVAVLDM 632 (1107)
Q Consensus 554 g~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~-~~~la~Gs~dg~V~iwd~ 632 (1107)
|+.|+.|+||++........ ........+..+.+|...|++++|+|+ +.+||+|+.||+|+|||+
T Consensus 114 gs~d~~v~iwd~~~~~~~~~--------------~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~ 179 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAK--------------QQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQV 179 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTC--------------SSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEE
T ss_pred cCCCceEEEEEccccccCCc--------------CCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEc
Confidence 88999999999865310000 000001123445679999999999998 789999999999999999
Q ss_pred CCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcce
Q 001287 633 NLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENM 704 (1107)
Q Consensus 633 ~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~ 704 (1107)
+++..+.. ..+|...|.+++|+ |++.+|++|+.||+|++||.. |+.
T Consensus 180 ~~~~~~~~---~~~~~~~v~~v~ws----------------------pdg~~lasgs~dg~v~iwd~~-~~~ 225 (434)
T 2oit_A 180 TETVKVCA---TLPSTVAVTSVCWS----------------------PKGKQLAVGKQNGTVVQYLPT-LQE 225 (434)
T ss_dssp SSSEEEEE---EECGGGCEEEEEEC----------------------TTSSCEEEEETTSCEEEECTT-CCE
T ss_pred CCCcceee---ccCCCCceeEEEEc----------------------CCCCEEEEEcCCCcEEEEccC-Ccc
Confidence 98865532 24588999999999 568889999999999999987 444
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.52 E-value=1e-12 Score=151.59 Aligned_cols=157 Identities=8% Similarity=0.015 Sum_probs=108.9
Q ss_pred CCcceeeeCCCCCCEEE-----EEEEeCCCEEEEEeC-CC--cEEEEEcCCCeeeeeeccC-CCeEEEEEecCCCEEEEE
Q 001287 65 DGIEGLLISPSQLPYKN-----LEFLQNQGFLISITN-DN--EIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIG 135 (1107)
Q Consensus 65 ~~~~~~~~~~h~~~V~~-----l~fs~d~~~L~S~s~-d~--~I~vWDl~s~~~~~~~~~~-~~Vt~l~~~~~~~~l~~g 135 (1107)
.+.+...+..|...+.. .+|+|||.+|+.++. ++ .|.+||+.+++........ ..+...+|+|++++|+.+
T Consensus 19 ~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~ 98 (388)
T 3pe7_A 19 TGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYV 98 (388)
T ss_dssp TCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEE
T ss_pred CCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEE
Confidence 44556666677766665 889999999999987 66 4889999999877665443 344467899999999999
Q ss_pred cCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEc--ccCCCCCEEEEEE----------------
Q 001287 136 DENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP--HPNSSGNRVLIAY---------------- 197 (1107)
Q Consensus 136 ~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f--~P~~~~~~ll~~~---------------- 197 (1107)
..++.|++|+++. ++.... +..+. ..+....| +| ++.+++...
T Consensus 99 ~~~~~l~~~d~~~--g~~~~~-~~~~~--------------~~~~~~~~~~~~--dg~~l~~~~~~~~~~~~~~~~~~~~ 159 (388)
T 3pe7_A 99 KDGRNLMRVDLAT--LEENVV-YQVPA--------------EWVGYGTWVANS--DCTKLVGIEIRREDWVPLTDWKKFH 159 (388)
T ss_dssp ETTTEEEEEETTT--CCEEEE-EECCT--------------TEEEEEEEEECT--TSSEEEEEEEEGGGCCCCCSHHHHH
T ss_pred eCCCeEEEEECCC--Ccceee-eechh--------------hcccccceeECC--CCCeeccccccCcccccccccchhh
Confidence 9999888888765 333321 22332 22333333 44 677555322
Q ss_pred ------CCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecC-CCCEEEEEEc
Q 001287 198 ------ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS-SGSILAVGYI 270 (1107)
Q Consensus 198 ------~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp-dg~~l~sg~~ 270 (1107)
.+..|.+||+.+++...+..+ ...+..+.|. | ||+.|+....
T Consensus 160 ~~~~~~~~~~l~~~d~~~g~~~~l~~~------------------------------~~~~~~~~~s-p~dg~~l~~~~~ 208 (388)
T 3pe7_A 160 EFYFTKPCCRLMRVDLKTGESTVILQE------------------------------NQWLGHPIYR-PYDDSTVAFCHE 208 (388)
T ss_dssp HHGGGCCCEEEEEEETTTCCEEEEEEE------------------------------SSCEEEEEEE-TTEEEEEEEEEC
T ss_pred hhhccCCcceEEEEECCCCceEEeecC------------------------------CccccccEEC-CCCCCEEEEEEe
Confidence 346789999999877665544 4567788885 9 9998887765
Q ss_pred C
Q 001287 271 D 271 (1107)
Q Consensus 271 d 271 (1107)
+
T Consensus 209 ~ 209 (388)
T 3pe7_A 209 G 209 (388)
T ss_dssp S
T ss_pred c
Confidence 3
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.50 E-value=1.7e-12 Score=149.73 Aligned_cols=196 Identities=13% Similarity=0.054 Sum_probs=129.9
Q ss_pred EEEcCCCCEEEEEEC-CC--cEEEEeCCCcceeeeCC-CCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeecc
Q 001287 41 LAFDHIQRLLAIATL-DG--RIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW 116 (1107)
Q Consensus 41 lafsp~~~~LA~Gs~-dg--~I~iw~~~~~~~~~~~~-h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~ 116 (1107)
.+|+|||++||.++. +| .|.+|+..+.+...+.. |...+..+.|+||+.+|+.++.++.|.+||+.+++.......
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~ 120 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV 120 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec
Confidence 789999999999998 67 48888987776654444 444555788999999999999999999999999977655543
Q ss_pred C-CCeEE--EEEecCCCEEEEEc--------------------CCCcEEEEEeecCCCceeecceeecccccccccCCCC
Q 001287 117 E-SNITA--FSVISGSHFMYIGD--------------------ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPL 173 (1107)
Q Consensus 117 ~-~~Vt~--l~~~~~~~~l~~g~--------------------~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~ 173 (1107)
+ ..+.. ..+++++.+++... .+....||.++..+++... +..+.
T Consensus 121 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~----l~~~~--------- 187 (388)
T 3pe7_A 121 PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV----ILQEN--------- 187 (388)
T ss_dssp CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE----EEEES---------
T ss_pred hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE----eecCC---------
Confidence 3 33322 34588888887432 1122344444544455443 22222
Q ss_pred CCCCCeEEEEcccCCCCCEEEEEECC------CeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCC
Q 001287 174 LSHQPVVGVLPHPNSSGNRVLIAYEN------ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQP 247 (1107)
Q Consensus 174 ~~~~~V~~v~f~P~~~~~~ll~~~~d------g~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1107)
..+..+.|+|. ++++|+.+..+ ..|.++|..++....+..+.
T Consensus 188 ---~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~---------------------------- 235 (388)
T 3pe7_A 188 ---QWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHA---------------------------- 235 (388)
T ss_dssp ---SCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCC----------------------------
T ss_pred ---ccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCC----------------------------
Confidence 56889999883 46667766653 26777777766554433220
Q ss_pred CCCceeEEEeecCCCCEEEEEEc-CC----cEEEEeCCCC
Q 001287 248 EEKEISALCWASSSGSILAVGYI-DG----DILLWNTSTT 282 (1107)
Q Consensus 248 ~~~~Vtsl~w~spdg~~l~sg~~-dG----~I~lWd~~~~ 282 (1107)
....+...+|. |||+.|+..+. ++ .|.+||+.++
T Consensus 236 ~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (388)
T 3pe7_A 236 EGESCTHEFWV-PDGSALVYVSYLKGSPDRFIYSADPETL 274 (388)
T ss_dssp TTEEEEEEEEC-TTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred CCcccccceEC-CCCCEEEEEecCCCCCcceEEEEecCCC
Confidence 01246778885 99997765443 22 3889988755
No 166
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.46 E-value=7.7e-12 Score=155.52 Aligned_cols=200 Identities=12% Similarity=0.082 Sum_probs=135.1
Q ss_pred cCCCCCeEEEEEcCCCCEEEEE--ECCCcEEEEeC-CCcceeeeCCCCCCEE---------EEEEE--eCCCE-EEEEeC
Q 001287 32 YGIPATASILAFDHIQRLLAIA--TLDGRIKVIGG-DGIEGLLISPSQLPYK---------NLEFL--QNQGF-LISITN 96 (1107)
Q Consensus 32 ~G~~~~i~~lafsp~~~~LA~G--s~dg~I~iw~~-~~~~~~~~~~h~~~V~---------~l~fs--~d~~~-L~S~s~ 96 (1107)
.++...+..++|+++.-+++.+ ..+++..||.. .+.....+..|...+. ...|+ ||+.+ |+.++.
T Consensus 20 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~ 99 (662)
T 3azo_A 20 ASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF 99 (662)
T ss_dssp HHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT
T ss_pred hhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEEC
Confidence 3567789999999887777776 45788999984 4445556666766666 66676 99988 665554
Q ss_pred -CCcEEEEEcC--C-Ceeeeeec-----cCCCeEEEEEecCCCEEEEEcCC----------CcEEEEEeecCC----Cce
Q 001287 97 -DNEIQVWSLE--S-RSLACCLK-----WESNITAFSVISGSHFMYIGDEN----------GLMSVIKYDADE----GKL 153 (1107)
Q Consensus 97 -d~~I~vWDl~--s-~~~~~~~~-----~~~~Vt~l~~~~~~~~l~~g~~d----------g~V~vw~~d~~~----~~l 153 (1107)
+..|.+||+. . +....... +...+.+++|+|++++|+.++.+ ..|++|+++... +..
T Consensus 100 ~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 179 (662)
T 3azo_A 100 GDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV 179 (662)
T ss_dssp TTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS
T ss_pred CCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce
Confidence 4567777766 3 44333333 45678999999999999988765 456666554310 343
Q ss_pred eecceeec-ccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECC--------CeEEEEEcc-CC---EEEEEeCCcc
Q 001287 154 FQLPYNIS-ADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN--------ALVILWDVS-EA---QIIFVGGGKD 220 (1107)
Q Consensus 154 ~~~~~~i~-~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~d--------g~V~vwdl~-~~---~~~~~~g~~~ 220 (1107)
.+ +. .+. ..+..++|+| +|++|+.++.+ ..|.+||+. ++ ....+..+
T Consensus 180 ~~----l~~~~~------------~~~~~~~~Sp--DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~-- 239 (662)
T 3azo_A 180 RE----LSDDAH------------RFVTGPRLSP--DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG-- 239 (662)
T ss_dssp EE----SSCSCS------------SEECCCEECT--TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE--
T ss_pred eE----EEecCC------------CcccCceECC--CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC--
Confidence 32 22 222 4577889988 78888877755 379999998 56 44433321
Q ss_pred ccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeC
Q 001287 221 LQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 279 (1107)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~ 279 (1107)
+...+.++.|. |||++++++..+|...+|.+
T Consensus 240 ---------------------------~~~~~~~~~~s-pdg~l~~~~~~~~~~~l~~~ 270 (662)
T 3azo_A 240 ---------------------------PEEAIAQAEWA-PDGSLIVATDRTGWWNLHRV 270 (662)
T ss_dssp ---------------------------TTBCEEEEEEC-TTSCEEEEECTTSSCEEEEE
T ss_pred ---------------------------CCceEcceEEC-CCCeEEEEECCCCCeEEEEE
Confidence 04567889985 99998888888884444443
No 167
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.45 E-value=5.5e-14 Score=111.62 Aligned_cols=59 Identities=27% Similarity=0.287 Sum_probs=53.6
Q ss_pred CHHHHHHHhccCCChHHHHHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHHHHHHhh
Q 001287 1039 TREEIIAKYRKAEDASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTME 1100 (1107)
Q Consensus 1039 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~ 1100 (1107)
.++.++++ ..++.+++.+|++||.||||||+.|++||++|+++|++|+++|++|++|||
T Consensus 5 ~i~~v~~q---v~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~Kyk 63 (63)
T 1urq_A 5 GIEGVKGA---ASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKYK 63 (63)
T ss_dssp -CHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46778877 666789999999999999999999999999999999999999999999996
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.45 E-value=6.6e-12 Score=156.13 Aligned_cols=164 Identities=5% Similarity=-0.003 Sum_probs=105.4
Q ss_pred eCCCCCCEEEEEEEeCCCEEEEE--eCCCcEEEEEcC-CCeeeeeeccCCCeE---------EEEEe--cCCCE-EEEEc
Q 001287 72 ISPSQLPYKNLEFLQNQGFLISI--TNDNEIQVWSLE-SRSLACCLKWESNIT---------AFSVI--SGSHF-MYIGD 136 (1107)
Q Consensus 72 ~~~h~~~V~~l~fs~d~~~L~S~--s~d~~I~vWDl~-s~~~~~~~~~~~~Vt---------~l~~~--~~~~~-l~~g~ 136 (1107)
+..|...|..++|++++.++++. +.++...||... .+.......+...+. .+.++ |++++ |+.+.
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~ 98 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTH 98 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEB
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEE
Confidence 44588899999999886666666 457889999954 344433334544555 55555 99988 77665
Q ss_pred CCCcEEEEEeecC--C-CceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECC----------CeEE
Q 001287 137 ENGLMSVIKYDAD--E-GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN----------ALVI 203 (1107)
Q Consensus 137 ~dg~V~vw~~d~~--~-~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~d----------g~V~ 203 (1107)
.. ...||.++.. . +...+ +.... ...+...+.+++|+| +|++|+.++.+ ..|.
T Consensus 99 ~~-~~~l~~~~~~~~g~~~~~~----l~~~~-------~~~~~~~~~~~~~sp--Dg~~l~~~~~~~~~~~~~~~~~~i~ 164 (662)
T 3azo_A 99 FG-DQRLYAFEPDAPGGAVPRP----LTPVS-------AVGGGLRWADPVLLP--ERGEVWCMAEEFTGEGPSDVRRFLA 164 (662)
T ss_dssp TT-TCCEEEECTTSTTCCCCEE----CSCCC-------CSTTCEEEEEEEEET--TTTEEEEEEEEECSSSTTCEEEEEE
T ss_pred CC-CCeEEEEcCCCCCCCCCEe----ccCCc-------cCCCCccccCcEECC--CCCEEEEEEecccCCCCCCceeEEE
Confidence 42 3345666654 2 33332 22210 000114588999999 78888888876 5899
Q ss_pred EEEccC------CEEEEEe-CCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCC----
Q 001287 204 LWDVSE------AQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG---- 272 (1107)
Q Consensus 204 vwdl~~------~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG---- 272 (1107)
+||+.+ +....+. .+ ...+.+++| ||||++|+.++.++
T Consensus 165 ~~~~~~~~~~~~~~~~~l~~~~------------------------------~~~~~~~~~-SpDG~~la~~~~~~~~~~ 213 (662)
T 3azo_A 165 AVPLDGSAAADRSAVRELSDDA------------------------------HRFVTGPRL-SPDGRQAVWLAWDHPRMP 213 (662)
T ss_dssp EEETTSTTTTCGGGSEESSCSC------------------------------SSEECCCEE-CTTSSEEEEEEECTTCCT
T ss_pred EEECCCCccccCCceeEEEecC------------------------------CCcccCceE-CCCCCEEEEEECCCCCCC
Confidence 999988 6554433 22 345667887 49999999887553
Q ss_pred ----cEEEEeCC
Q 001287 273 ----DILLWNTS 280 (1107)
Q Consensus 273 ----~I~lWd~~ 280 (1107)
.|.+||+.
T Consensus 214 ~~~~~i~~~d~~ 225 (662)
T 3azo_A 214 WEGTELKTARVT 225 (662)
T ss_dssp TTCEEEEEEEEC
T ss_pred CCCcEEEEEEEC
Confidence 56666654
No 169
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.44 E-value=3.1e-12 Score=147.63 Aligned_cols=161 Identities=8% Similarity=-0.020 Sum_probs=107.4
Q ss_pred eEEEEEcCCCCEEEEEECC---CcEEEEeCCCcceeeeCCCCCCEE-EEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeee
Q 001287 38 ASILAFDHIQRLLAIATLD---GRIKVIGGDGIEGLLISPSQLPYK-NLEFLQNQGFLISITNDNEIQVWSLESRSLACC 113 (1107)
Q Consensus 38 i~~lafsp~~~~LA~Gs~d---g~I~iw~~~~~~~~~~~~h~~~V~-~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~ 113 (1107)
+..++|+|+|++||..... ..|++|+..+.+...+..+...+. .+.|+||+.+|+.++.++.|.+||+.+++....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence 5678999999999888654 368888987776655555544433 488999999999999999999999999876554
Q ss_pred eccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEE
Q 001287 114 LKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1107)
Q Consensus 114 ~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~l 193 (1107)
...... +++++++|+....++...+|.. .+.|+| +++.+
T Consensus 118 ~~~~~~-----~~~~g~~l~~~~~~~~~~~~~~----------------------------------~~~~sp--dg~~~ 156 (396)
T 3c5m_A 118 YTVDEE-----WKGYGTWVANSDCTKLVGIEIL----------------------------------KRDWQP--LTSWE 156 (396)
T ss_dssp EECCTT-----EEEEEEEEECTTSSEEEEEEEE----------------------------------GGGCCC--CCSHH
T ss_pred Eecccc-----cCCCCCEEEeccCCcccccccc----------------------------------ccccCC--CCcce
Confidence 432222 4556666665555443333321 112334 34433
Q ss_pred EEE-----ECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecC-CCCEEEE
Q 001287 194 LIA-----YENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS-SGSILAV 267 (1107)
Q Consensus 194 l~~-----~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp-dg~~l~s 267 (1107)
+.+ ..+..|.+||+.+++...+..+ ...+..+.|. | +|..|+.
T Consensus 157 ~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~------------------------------~~~~~~~~~s-p~dg~~l~~ 205 (396)
T 3c5m_A 157 KFAEFYHTNPTCRLIKVDIETGELEVIHQD------------------------------TAWLGHPIYR-PFDDSTVGF 205 (396)
T ss_dssp HHHHHHHTCCCEEEEEEETTTCCEEEEEEE------------------------------SSCEEEEEEE-TTEEEEEEE
T ss_pred eeeeeccCCCcceEEEEECCCCcEEeeccC------------------------------CcccccceEC-CCCCCEEEE
Confidence 332 3456788999998876655433 4567788885 8 7887776
Q ss_pred EEc
Q 001287 268 GYI 270 (1107)
Q Consensus 268 g~~ 270 (1107)
.+.
T Consensus 206 ~~~ 208 (396)
T 3c5m_A 206 CHE 208 (396)
T ss_dssp EEC
T ss_pred Eec
Confidence 654
No 170
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.44 E-value=3.6e-11 Score=151.45 Aligned_cols=168 Identities=17% Similarity=0.235 Sum_probs=108.6
Q ss_pred CCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeec-cCC-----CeEEEEEecCCCEEEEEcCC---------Cc
Q 001287 76 QLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK-WES-----NITAFSVISGSHFMYIGDEN---------GL 140 (1107)
Q Consensus 76 ~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~-~~~-----~Vt~l~~~~~~~~l~~g~~d---------g~ 140 (1107)
......+.|+||+.+|++. |++|.+||+.+++....+. +.. ....++|+|++++|+.++.+ +.
T Consensus 16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 3446689999999888885 9999999999998765553 221 23448999999999998875 44
Q ss_pred EEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEe--CC
Q 001287 141 MSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG--GG 218 (1107)
Q Consensus 141 V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~--g~ 218 (1107)
+++|++. ++++.+ +..+. ..+..++|+| +|++|+.+ .++.|.+||+.++....+. ++
T Consensus 94 ~~~~d~~--~~~~~~----l~~~~------------~~~~~~~~SP--dG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~ 152 (740)
T 4a5s_A 94 YDIYDLN--KRQLIT----EERIP------------NNTQWVTWSP--VGHKLAYV-WNNDIYVKIEPNLPSYRITWTGK 152 (740)
T ss_dssp EEEEETT--TTEECC----SSCCC------------TTEEEEEECS--STTCEEEE-ETTEEEEESSTTSCCEECCSCCB
T ss_pred EEEEECC--CCcEEE----cccCC------------CcceeeEECC--CCCEEEEE-ECCeEEEEECCCCceEEEcCCCC
Confidence 5566654 455443 33333 5699999999 78878777 5789999999888755432 11
Q ss_pred ccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCc-EEEEeCC
Q 001287 219 KDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGD-ILLWNTS 280 (1107)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~-I~lWd~~ 280 (1107)
...... +..+.+-. ++--....++.| ||||++|+.+..|.+ +.+|++.
T Consensus 153 ~~~~~~------------g~~~~v~~-ee~~~~~~~~~w-SpDg~~la~~~~d~~~v~~~~~~ 201 (740)
T 4a5s_A 153 EDIIYN------------GITDWVYE-EEVFSAYSALWW-SPNGTFLAYAQFNDTEVPLIEYS 201 (740)
T ss_dssp TTTEEE------------SBCCHHHH-HHTSSSSBCEEE-CTTSSEEEEEEEECTTCCEEEEE
T ss_pred ccceec------------Cccccccc-chhcCCCcceEE-CCCCCEEEEEEEcccCCceEEEE
Confidence 000000 00000000 000123345777 599999998876554 8888764
No 171
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.42 E-value=8e-11 Score=134.47 Aligned_cols=149 Identities=9% Similarity=0.051 Sum_probs=99.5
Q ss_pred CCCEEEEEe------CCCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcC----------CCcEEEEEeecCC
Q 001287 87 NQGFLISIT------NDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDE----------NGLMSVIKYDADE 150 (1107)
Q Consensus 87 d~~~L~S~s------~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~----------dg~V~vw~~d~~~ 150 (1107)
++.+++.+. .|+.|.+||..+++++..+...... .++++|+++++++++. ++.|.+|+.. +
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~--t 90 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD--K 90 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT--T
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc--C
Confidence 455665554 3679999999999888776544334 8999999999999873 5678888754 3
Q ss_pred CceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEEC--CCeEEEEEccCCEEEEE-eCCccccccccc
Q 001287 151 GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE--NALVILWDVSEAQIIFV-GGGKDLQLKDGV 227 (1107)
Q Consensus 151 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~--dg~V~vwdl~~~~~~~~-~g~~~~~~~~~~ 227 (1107)
++.... ..+.... ......+..++++| +|++|+++.. ++.|.+||+.+++.+.. ...
T Consensus 91 ~~~~~~-i~~~~~~--------~~~g~~p~~i~~sp--dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~--------- 150 (361)
T 2oiz_A 91 LTFEKE-ISLPPKR--------VQGLNYDGLFRQTT--DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA--------- 150 (361)
T ss_dssp CCEEEE-EEECTTB--------CCBCCCGGGEEECT--TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG---------
T ss_pred CcEEEE-EEcCccc--------cccCCCcceEEECC--CCCEEEEECCCCCCeEEEEECCCCcEEEEEecC---------
Confidence 444432 1121100 00013467889988 7888888764 57999999999987654 322
Q ss_pred cCCCCCCCCccccCCCCCCCCCCceeEEEeecCCC-CEEEEEEcCCcEEEEeCCC
Q 001287 228 VDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG-SILAVGYIDGDILLWNTST 281 (1107)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg-~~l~sg~~dG~I~lWd~~~ 281 (1107)
.. ...+... |++ ..+++.+.||.+.+|+...
T Consensus 151 ---------------------~~-~~~v~~~-p~~~~~~~~~~~dg~~~~v~~~~ 182 (361)
T 2oiz_A 151 ---------------------AG-CWSVIPQ-PNRPRSFMTICGDGGLLTINLGE 182 (361)
T ss_dssp ---------------------TT-EEEEEEC-TTSSSEEEEEETTSSEEEEEECT
T ss_pred ---------------------CC-cceeEEc-CCCCeeEEEECCCCcEEEEEECC
Confidence 11 1112333 555 6788888999999988753
No 172
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.41 E-value=4.3e-11 Score=136.68 Aligned_cols=146 Identities=10% Similarity=0.220 Sum_probs=102.6
Q ss_pred CCCEEEEEE------CCCcEEEEeCCCccee-eeCCCCCCEEEEEEEeCCCEEEEEeC----------CCcEEEEEcCCC
Q 001287 46 IQRLLAIAT------LDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITN----------DNEIQVWSLESR 108 (1107)
Q Consensus 46 ~~~~LA~Gs------~dg~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~----------d~~I~vWDl~s~ 108 (1107)
+++++.+.. .|+.|++||....+.+ .+..+..| .++|+||+++|++++. ++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 556666654 3689999998655443 34445555 8999999999998873 567999999999
Q ss_pred eeeeeecc-------CCCeEEEEEecCCCEEEEEcC--CCcEEEEEeecCCCceeeccee-ecccccccccCCCCCCCCC
Q 001287 109 SLACCLKW-------ESNITAFSVISGSHFMYIGDE--NGLMSVIKYDADEGKLFQLPYN-ISADALSEKAGFPLLSHQP 178 (1107)
Q Consensus 109 ~~~~~~~~-------~~~Vt~l~~~~~~~~l~~g~~--dg~V~vw~~d~~~~~l~~~~~~-i~~~~~~~~~~~~~~~~~~ 178 (1107)
+.+..+.. ......++++|++++|+++.. +++|.+|+.+. +++. .. ++. ..
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~--~~~~---~~~i~~--------------~~ 152 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAK--GDYV---EDVTAA--------------AG 152 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTT--TEEE---EEEGGG--------------TT
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCC--CcEE---EEEecC--------------CC
Confidence 88777642 245778999999999999874 57888887664 4443 12 221 12
Q ss_pred eEEEEcccCCCCCEEEEEECCCeEEEEEccC-CEEE
Q 001287 179 VVGVLPHPNSSGNRVLIAYENALVILWDVSE-AQII 213 (1107)
Q Consensus 179 V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~-~~~~ 213 (1107)
...+.+.|. ...++++.+.||.+.+|++.. ++..
T Consensus 153 ~~~v~~~p~-~~~~~~~~~~dg~~~~v~~~~~g~~~ 187 (361)
T 2oiz_A 153 CWSVIPQPN-RPRSFMTICGDGGLLTINLGEDGKVA 187 (361)
T ss_dssp EEEEEECTT-SSSEEEEEETTSSEEEEEECTTSSEE
T ss_pred cceeEEcCC-CCeeEEEECCCCcEEEEEECCCCcEe
Confidence 233556664 235688899999999999865 4443
No 173
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.36 E-value=1.6e-09 Score=130.29 Aligned_cols=202 Identities=11% Similarity=0.087 Sum_probs=138.7
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcC--CCeeeeeeccCCC
Q 001287 42 AFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE--SRSLACCLKWESN 119 (1107)
Q Consensus 42 afsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~--s~~~~~~~~~~~~ 119 (1107)
..+|.+.++++...++.|.+||..+.+++........+..+.|+||+++|++++.|+.|.+||+. +++.+..+.....
T Consensus 162 ~~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~ 241 (567)
T 1qks_A 162 DWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE 241 (567)
T ss_dssp CCCGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE
T ss_pred ccCCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC
Confidence 35676677778888899999999887776444444567799999999999999999999999996 8888877766667
Q ss_pred eEEEEEe----cCCCEEEEEcC-CCcEEEEEeecCCCceeecceeecccccccccCCCCCC-CCCeEEEEcccCCCCCEE
Q 001287 120 ITAFSVI----SGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLS-HQPVVGVLPHPNSSGNRV 193 (1107)
Q Consensus 120 Vt~l~~~----~~~~~l~~g~~-dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~-~~~V~~v~f~P~~~~~~l 193 (1107)
...++|+ |+++++++++. +++|.|+| ..+.++++. ++.... .......+ ...+..+..+|. ....+
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD--~~t~~~~~~---i~~~~~--~~~~~~~~p~~rva~i~~s~~-~~~~v 313 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMD--GETLEPKKI---QSTRGM--TYDEQEYHPEPRVAAILASHY-RPEFI 313 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEE--TTTCCEEEE---EECCEE--CTTTCCEESCCCEEEEEECSS-SSEEE
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEE--CCCCcEEEE---Eecccc--ccccccccCCCceEEEEEcCC-CCEEE
Confidence 7899999 69999998876 48888876 434555542 321110 00000000 125777888764 23334
Q ss_pred EEEECCCeEEEEEccCCEEEEE--eCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEE-c
Q 001287 194 LIAYENALVILWDVSEAQIIFV--GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY-I 270 (1107)
Q Consensus 194 l~~~~dg~V~vwdl~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~-~ 270 (1107)
+.....|.|.++|....+.... ... ......+.|. |+|++++++. .
T Consensus 314 v~~~~~g~v~~vd~~~~~~~~v~~i~~------------------------------~~~~~d~~~~-pdgr~~~va~~~ 362 (567)
T 1qks_A 314 VNVKETGKILLVDYTDLNNLKTTEISA------------------------------ERFLHDGGLD-GSHRYFITAANA 362 (567)
T ss_dssp EEETTTTEEEEEETTCSSEEEEEEEEC------------------------------CSSEEEEEEC-TTSCEEEEEEGG
T ss_pred EEecCCCeEEEEecCCCccceeeeeec------------------------------cccccCceEC-CCCCEEEEEeCC
Confidence 4555678999999876532221 111 2335567775 9999887766 5
Q ss_pred CCcEEEEeCCCC
Q 001287 271 DGDILLWNTSTT 282 (1107)
Q Consensus 271 dG~I~lWd~~~~ 282 (1107)
++.|.+||..++
T Consensus 363 sn~V~ViD~~t~ 374 (567)
T 1qks_A 363 RNKLVVIDTKEG 374 (567)
T ss_dssp GTEEEEEETTTT
T ss_pred CCeEEEEECCCC
Confidence 788999998754
No 174
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.32 E-value=3.8e-10 Score=127.71 Aligned_cols=111 Identities=10% Similarity=0.066 Sum_probs=78.7
Q ss_pred CCEEEEEEEeCCCEEEEEe---------CCCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCC---CcEEEE
Q 001287 77 LPYKNLEFLQNQGFLISIT---------NDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDEN---GLMSVI 144 (1107)
Q Consensus 77 ~~V~~l~fs~d~~~L~S~s---------~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~d---g~V~vw 144 (1107)
..+..++| ||.+++... .++.|.+||+.+++.... ..+..++|+|++++|+....+ +...||
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~ 88 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIW 88 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence 34677777 778877653 256799999998865433 568899999999998877653 555667
Q ss_pred EeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECC-------------------------
Q 001287 145 KYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN------------------------- 199 (1107)
Q Consensus 145 ~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~d------------------------- 199 (1107)
.++...++..+ +.... . +.++.|+| ++++|+.++.+
T Consensus 89 ~~~~~~g~~~~----l~~~~------------~-~~~~~wsp--dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 149 (347)
T 2gop_A 89 VADLETLSSKK----ILEAK------------N-IRSLEWNE--DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDG 149 (347)
T ss_dssp EEETTTTEEEE----EEEES------------E-EEEEEECT--TSSEEEEEEECCCC---------CCCC---------
T ss_pred EEECCCCceEE----EEcCC------------C-ccceeECC--CCCEEEEEEccCCCcCCcEEEcccceeecCcccccC
Confidence 66665565543 22221 4 88999988 68878877642
Q ss_pred --CeEEEEEccCCEE
Q 001287 200 --ALVILWDVSEAQI 212 (1107)
Q Consensus 200 --g~V~vwdl~~~~~ 212 (1107)
..|.+||+.+++.
T Consensus 150 ~~~~l~~~d~~~~~~ 164 (347)
T 2gop_A 150 EKTTFWIFDTESEEV 164 (347)
T ss_dssp CEEEEEEEETTTTEE
T ss_pred ccceEEEEECCCCeE
Confidence 4688889888776
No 175
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.31 E-value=4.5e-09 Score=126.38 Aligned_cols=112 Identities=8% Similarity=0.114 Sum_probs=85.6
Q ss_pred eCCCEEEEEeCCCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeeccccc
Q 001287 86 QNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADAL 165 (1107)
Q Consensus 86 ~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~ 165 (1107)
+++.++++...+++|.|||..+++++..+.....+..+.++|+++++++++.++.|.+||+...++++.. +++..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~---~i~~G-- 239 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA---EIKIG-- 239 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE---EEECC--
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeE---EEecC--
Confidence 4445666777789999999999999988877777889999999999999999999999887422344442 24321
Q ss_pred ccccCCCCCCCCCeEEEEcc----cCCCCCEEEEE-ECCCeEEEEEccCCEEEEE
Q 001287 166 SEKAGFPLLSHQPVVGVLPH----PNSSGNRVLIA-YENALVILWDVSEAQIIFV 215 (1107)
Q Consensus 166 ~~~~~~~~~~~~~V~~v~f~----P~~~~~~ll~~-~~dg~V~vwdl~~~~~~~~ 215 (1107)
.....++|+ | +|++++++ +.++.|.|+|..+.+++..
T Consensus 240 -----------~~P~~ia~s~~~~p--DGk~l~v~n~~~~~v~ViD~~t~~~~~~ 281 (567)
T 1qks_A 240 -----------SEARSIETSKMEGW--EDKYAIAGAYWPPQYVIMDGETLEPKKI 281 (567)
T ss_dssp -----------SEEEEEEECCSTTC--TTTEEEEEEEETTEEEEEETTTCCEEEE
T ss_pred -----------CCCceeEEccccCC--CCCEEEEEEccCCeEEEEECCCCcEEEE
Confidence 336899998 4 67766655 4568999999998877654
No 176
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.23 E-value=4.7e-09 Score=115.24 Aligned_cols=199 Identities=11% Similarity=0.146 Sum_probs=137.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeC------CCCCCEEEEEEE-eCCCEEEEEeC-CCcEEEEEc
Q 001287 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS------PSQLPYKNLEFL-QNQGFLISITN-DNEIQVWSL 105 (1107)
Q Consensus 34 ~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~------~h~~~V~~l~fs-~d~~~L~S~s~-d~~I~vWDl 105 (1107)
.-..+.+++++|+++++++.+.++.|++|+.++....... .|...+..++|. +++..+++... ++.|.+||
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d- 106 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN- 106 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-
Confidence 3456899999999999988888999999998765443332 244578999996 56544454433 88999999
Q ss_pred CCCeeeeeec--cCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEE
Q 001287 106 ESRSLACCLK--WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVL 183 (1107)
Q Consensus 106 ~s~~~~~~~~--~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~ 183 (1107)
.+++.+..+. ....+.+++++++++++++...++.|++|+.+ ++.... +....+ ...+.+|+
T Consensus 107 ~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~---g~~~~~-~~~~~~------------~~~p~~i~ 170 (286)
T 1q7f_A 107 QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN---GNVLHK-FGCSKH------------LEFPNGVV 170 (286)
T ss_dssp TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT---SCEEEE-EECTTT------------CSSEEEEE
T ss_pred CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC---CCEEEE-eCCCCc------------cCCcEEEE
Confidence 5666665553 33578999999999877777778888777643 343321 111111 14589999
Q ss_pred cccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCC
Q 001287 184 PHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS 263 (1107)
Q Consensus 184 f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~ 263 (1107)
++| ++..+++...++.|.+||.....+..+... .....+.++++. ++|.
T Consensus 171 ~~~--~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~----------------------------g~~~~p~~i~~d-~~G~ 219 (286)
T 1q7f_A 171 VND--KQEIFISDNRAHCVKVFNYEGQYLRQIGGE----------------------------GITNYPIGVGIN-SNGE 219 (286)
T ss_dssp ECS--SSEEEEEEGGGTEEEEEETTCCEEEEESCT----------------------------TTSCSEEEEEEC-TTCC
T ss_pred ECC--CCCEEEEECCCCEEEEEcCCCCEEEEEccC----------------------------CccCCCcEEEEC-CCCC
Confidence 977 577555556789999999865543333211 002356788865 8999
Q ss_pred EEEEEEcCC-cEEEEeCC
Q 001287 264 ILAVGYIDG-DILLWNTS 280 (1107)
Q Consensus 264 ~l~sg~~dG-~I~lWd~~ 280 (1107)
.+++...++ .|.+|+..
T Consensus 220 l~v~~~~~~~~i~~~~~~ 237 (286)
T 1q7f_A 220 ILIADNHNNFNLTIFTQD 237 (286)
T ss_dssp EEEEECSSSCEEEEECTT
T ss_pred EEEEeCCCCEEEEEECCC
Confidence 888887776 99999964
No 177
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.22 E-value=2.6e-09 Score=120.84 Aligned_cols=94 Identities=16% Similarity=-0.001 Sum_probs=72.9
Q ss_pred CeEEEEEcCCCCEEEEEE---------CCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCC-----cEEE
Q 001287 37 TASILAFDHIQRLLAIAT---------LDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDN-----EIQV 102 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~Gs---------~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~-----~I~v 102 (1107)
.+...++ ||+.||... .++.|++|+..+.+...+ ..+..++|||||.+|+.++.++ .|.+
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~ 89 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWV 89 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEE
Confidence 4566777 899888753 257899999976655444 5688999999999999887542 3888
Q ss_pred EEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcC
Q 001287 103 WSLESRSLACCLKWESNITAFSVISGSHFMYIGDE 137 (1107)
Q Consensus 103 WDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~ 137 (1107)
||+.+++......... +.+++|+|++++|+.+..
T Consensus 90 ~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~ 123 (347)
T 2gop_A 90 ADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGF 123 (347)
T ss_dssp EETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEE
T ss_pred EECCCCceEEEEcCCC-ccceeECCCCCEEEEEEc
Confidence 8999987766655555 999999999998888763
No 178
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.22 E-value=1.9e-10 Score=132.55 Aligned_cols=99 Identities=5% Similarity=0.009 Sum_probs=62.8
Q ss_pred EEEEcCCCeeeeeeccC-C-----CeEEEEEecCCCEEEEEcC-CCcEEEEEeecCCCceeecceeecccccccccCCCC
Q 001287 101 QVWSLESRSLACCLKWE-S-----NITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPL 173 (1107)
Q Consensus 101 ~vWDl~s~~~~~~~~~~-~-----~Vt~l~~~~~~~~l~~g~~-dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~ 173 (1107)
..+|..++..+..+... . .+..++|+|++++|+.... +|...+|.++...++..+ +..+.
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~----l~~~~--------- 79 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ----LTEGK--------- 79 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE----CCCSS---------
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE----eecCC---------
Confidence 34577777665555322 2 2677899999999876644 454455656555565543 22211
Q ss_pred CCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEe
Q 001287 174 LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG 216 (1107)
Q Consensus 174 ~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~ 216 (1107)
......+.|+| ++++|+.+..++.|.+||+.+++...+.
T Consensus 80 --~~~~~~~~~sp--dg~~l~~~~~~~~l~~~d~~~~~~~~~~ 118 (396)
T 3c5m_A 80 --GDNTFGGFIST--DERAFFYVKNELNLMKVDLETLEEQVIY 118 (396)
T ss_dssp --CBCTTTCEECT--TSSEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred --CCccccceECC--CCCEEEEEEcCCcEEEEECCCCCcEEEE
Confidence 01122357877 7888989999999999999888765443
No 179
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.19 E-value=1.9e-09 Score=121.35 Aligned_cols=193 Identities=10% Similarity=0.030 Sum_probs=132.4
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-c
Q 001287 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-K 115 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~ 115 (1107)
.+.+++|+|++..++....++.++.|. ......+..+...+.+++|++++..+++...++.|.+||..+++..... .
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~ 84 (333)
T 2dg1_A 7 DLPTLFYSGKSNSAVPIISESELQTIT--AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS 84 (333)
T ss_dssp CCCBCCSCGGGGCSSCCCCGGGSCEEE--CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC
T ss_pred ccceeeecCCccceeEEeecccCcccc--cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeC
Confidence 367788999988888878889999993 3334445566677899999999887777788899999999988766544 4
Q ss_pred cCCCeEEEEEecCCCEEEEEcCC----CcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCC
Q 001287 116 WESNITAFSVISGSHFMYIGDEN----GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1107)
Q Consensus 116 ~~~~Vt~l~~~~~~~~l~~g~~d----g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~ 191 (1107)
....+.+++++++++++++...+ +.|++|+.+ .+.+... +.... ....+.++++.| ++.
T Consensus 85 ~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~--~~~~~~~---~~~~~----------~~~~~~~i~~d~--~g~ 147 (333)
T 2dg1_A 85 HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN--GDNLQDI---IEDLS----------TAYCIDDMVFDS--KGG 147 (333)
T ss_dssp SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT--SCSCEEE---ECSSS----------SCCCEEEEEECT--TSC
T ss_pred CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCC--CCEEEEE---EccCc----------cCCcccceEECC--CCC
Confidence 56789999999999877776665 566665544 3433311 11100 114689999987 677
Q ss_pred EEEEEEC-------CCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCE
Q 001287 192 RVLIAYE-------NALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1107)
Q Consensus 192 ~ll~~~~-------dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~ 264 (1107)
++++.. .+.|..||..+++...+... ...+.+++|. |+|+.
T Consensus 148 -l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------------------------------~~~~~~i~~~-~dg~~ 195 (333)
T 2dg1_A 148 -FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN------------------------------ISVANGIALS-TDEKV 195 (333)
T ss_dssp -EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE------------------------------ESSEEEEEEC-TTSSE
T ss_pred -EEEEeccccccCCCceEEEEeCCCCEEEEeecC------------------------------CCcccceEEC-CCCCE
Confidence 444444 24566666665554433211 2346778875 99986
Q ss_pred EEEE-EcCCcEEEEeCC
Q 001287 265 LAVG-YIDGDILLWNTS 280 (1107)
Q Consensus 265 l~sg-~~dG~I~lWd~~ 280 (1107)
|+.+ ..++.|.+|+..
T Consensus 196 l~v~~~~~~~i~~~d~~ 212 (333)
T 2dg1_A 196 LWVTETTANRLHRIALE 212 (333)
T ss_dssp EEEEEGGGTEEEEEEEC
T ss_pred EEEEeCCCCeEEEEEec
Confidence 6554 457889999885
No 180
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.17 E-value=6.1e-09 Score=117.14 Aligned_cols=212 Identities=13% Similarity=0.038 Sum_probs=138.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECC------------------------CcEEEEeCCCcceeeeC--CCCCCEEEEEEEeCC
Q 001287 35 PATASILAFDHIQRLLAIATLD------------------------GRIKVIGGDGIEGLLIS--PSQLPYKNLEFLQNQ 88 (1107)
Q Consensus 35 ~~~i~~lafsp~~~~LA~Gs~d------------------------g~I~iw~~~~~~~~~~~--~h~~~V~~l~fs~d~ 88 (1107)
-+.+..++++|+|+++++...+ +.|.+||....+++... .+-.....|+|++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4579999999999999888877 47999998755544332 344578999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCe-eeeeec----------cCCCeEEEEEec-CCCEEEEEc-CCCcEEEEEeecCCCceee
Q 001287 89 GFLISITNDNEIQVWSLESRS-LACCLK----------WESNITAFSVIS-GSHFMYIGD-ENGLMSVIKYDADEGKLFQ 155 (1107)
Q Consensus 89 ~~L~S~s~d~~I~vWDl~s~~-~~~~~~----------~~~~Vt~l~~~~-~~~~l~~g~-~dg~V~vw~~d~~~~~l~~ 155 (1107)
..+++.+.++.|.+||..... .+..+. +-..+..+++++ ++.++++.+ .++.|++|+. ++.+..
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~---~g~~~~ 179 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP---SGKFVT 179 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT---TSCEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC---CCCEEE
Confidence 988888888999999987653 343332 123688999999 566666654 5887777763 255543
Q ss_pred cceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCC
Q 001287 156 LPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGD 235 (1107)
Q Consensus 156 ~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 235 (1107)
. +...... ..........+.+|++.|. .+.++++...++.|++||..+++.+......
T Consensus 180 ~---~~~~g~~--~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~---------------- 237 (329)
T 3fvz_A 180 Q---WGEESSG--SSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKHA---------------- 237 (329)
T ss_dssp E---ECEECCS--SSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECCT----------------
T ss_pred E---eccCCCC--CCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEecc----------------
Confidence 2 2211100 0000111245899999873 2665666667889999999977766554220
Q ss_pred CccccCCCCCCCCCCceeEEEeecC------CCCEEEEEEcCCcEEEEeCCCCC
Q 001287 236 STFLEGISEHQPEEKEISALCWASS------SGSILAVGYIDGDILLWNTSTTA 283 (1107)
Q Consensus 236 ~~~~~~~~~~~~~~~~Vtsl~w~sp------dg~~l~sg~~dG~I~lWd~~~~~ 283 (1107)
.....+.+++|. | +|...++...++.|++|+..+++
T Consensus 238 -----------~~~~~~~~~~~~-pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~ 279 (329)
T 3fvz_A 238 -----------SFGRNVFAISYI-PGFLFAVNGKPYFGDQEPVQGFVMNFSSGE 279 (329)
T ss_dssp -----------TTTTCEEEEEEE-TTEEEEEECCCCTTCSCCCCEEEEETTTCC
T ss_pred -----------ccCCCcceeeec-CCEEEEeCCCEEeccCCCcEEEEEEcCCCe
Confidence 003356677765 6 33333333345589999987663
No 181
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.15 E-value=5.9e-09 Score=114.41 Aligned_cols=198 Identities=8% Similarity=0.091 Sum_probs=136.5
Q ss_pred CCeEEEEE-cCCCCEEEEEEC-CCcEEEEeCCCcceeee-CCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeee
Q 001287 36 ATASILAF-DHIQRLLAIATL-DGRIKVIGGDGIEGLLI-SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC 112 (1107)
Q Consensus 36 ~~i~~laf-sp~~~~LA~Gs~-dg~I~iw~~~~~~~~~~-~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~ 112 (1107)
..+..+++ ++++.++++... ++.|++|+.++...... ..+...+..++|++++..+++...++.|.+||.. ++.+.
T Consensus 77 ~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~ 155 (286)
T 1q7f_A 77 LYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLH 155 (286)
T ss_dssp SSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred cCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEE
Confidence 56889999 577777666644 89999999766544333 3344578999999998877777778999999965 44444
Q ss_pred eec---cCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCC
Q 001287 113 CLK---WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1107)
Q Consensus 113 ~~~---~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~ 189 (1107)
.+. ....+.+++++++++++++...++.|++|+.+ +.... .+..+. ....+.++++.| +
T Consensus 156 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~---g~~~~---~~~~~g----------~~~~p~~i~~d~--~ 217 (286)
T 1q7f_A 156 KFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE---GQYLR---QIGGEG----------ITNYPIGVGINS--N 217 (286)
T ss_dssp EEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT---CCEEE---EESCTT----------TSCSEEEEEECT--T
T ss_pred EeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC---CCEEE---EEccCC----------ccCCCcEEEECC--C
Confidence 442 33568999999999877776778888888754 33332 132210 114689999977 6
Q ss_pred CCEEEEEECCC-eEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEE
Q 001287 190 GNRVLIAYENA-LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1107)
Q Consensus 190 ~~~ll~~~~dg-~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg 268 (1107)
+.++++...++ .|.+||.....+..+..+. ....+.++++. |+|+.+++
T Consensus 218 G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~----------------------------~~~~~~~i~~~-~~g~l~vs- 267 (286)
T 1q7f_A 218 GEILIADNHNNFNLTIFTQDGQLISALESKV----------------------------KHAQCFDVALM-DDGSVVLA- 267 (286)
T ss_dssp CCEEEEECSSSCEEEEECTTSCEEEEEEESS----------------------------CCSCEEEEEEE-TTTEEEEE-
T ss_pred CCEEEEeCCCCEEEEEECCCCCEEEEEcccC----------------------------CCCcceeEEEC-CCCcEEEE-
Confidence 77566666665 9999997654443332220 02346678875 89986666
Q ss_pred EcCCcEEEEeCCCC
Q 001287 269 YIDGDILLWNTSTT 282 (1107)
Q Consensus 269 ~~dG~I~lWd~~~~ 282 (1107)
+.++.|++|++...
T Consensus 268 ~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 268 SKDYRLYIYRYVQL 281 (286)
T ss_dssp ETTTEEEEEECSCC
T ss_pred CCCCeEEEEEcccc
Confidence 67999999998643
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.14 E-value=6.3e-09 Score=130.26 Aligned_cols=150 Identities=7% Similarity=0.022 Sum_probs=101.2
Q ss_pred CCCCEEEEEECCC-----cEEEEeCCCc-ceee------eCCCCCCEEEEEEEeCCCEEEEEeCCC-----cEEEEEcCC
Q 001287 45 HIQRLLAIATLDG-----RIKVIGGDGI-EGLL------ISPSQLPYKNLEFLQNQGFLISITNDN-----EIQVWSLES 107 (1107)
Q Consensus 45 p~~~~LA~Gs~dg-----~I~iw~~~~~-~~~~------~~~h~~~V~~l~fs~d~~~L~S~s~d~-----~I~vWDl~s 107 (1107)
|+|++++....++ .|++.+..+. ..++ ..+|...+..++|||||.+|+.++.++ +|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 8899888766442 4455554322 2222 123445689999999999998776543 899999999
Q ss_pred CeeeeeeccCCCeEEEEEecCCCEEEEEcCCCc----------------EEEEEeecCCCceeecceeecccccccccCC
Q 001287 108 RSLACCLKWESNITAFSVISGSHFMYIGDENGL----------------MSVIKYDADEGKLFQLPYNISADALSEKAGF 171 (1107)
Q Consensus 108 ~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~----------------V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~ 171 (1107)
++.+........+..++|+|+++.|+.+..++. |++|++......-.. .|..+.+.
T Consensus 161 g~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~-v~~~~~~~------- 232 (710)
T 2xdw_A 161 AKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDIL-CAEFPDEP------- 232 (710)
T ss_dssp TEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEE-EECCTTCT-------
T ss_pred CCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceE-EeccCCCC-------
Confidence 987764333334778999999999998887765 778777543211111 12222222
Q ss_pred CCCCCCCeEEEEcccCCCCCEEEEEEC-----CCeEEEEEccC
Q 001287 172 PLLSHQPVVGVLPHPNSSGNRVLIAYE-----NALVILWDVSE 209 (1107)
Q Consensus 172 ~~~~~~~V~~v~f~P~~~~~~ll~~~~-----dg~V~vwdl~~ 209 (1107)
..+.++.|+| +|++|+++.. +..|.+||+.+
T Consensus 233 -----~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~~l~~~d~~~ 268 (710)
T 2xdw_A 233 -----KWMGGAELSD--DGRYVLLSIREGCDPVNRLWYCDLQQ 268 (710)
T ss_dssp -----TCEEEEEECT--TSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred -----eEEEEEEEcC--CCCEEEEEEEccCCCccEEEEEECcc
Confidence 4578999988 7887887765 56899999986
No 183
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.14 E-value=2.9e-09 Score=132.97 Aligned_cols=157 Identities=8% Similarity=-0.045 Sum_probs=101.5
Q ss_pred CCCCEEEEEECCC---c--EEEEeCCCc--ceeee-----CCCCCCEEEEEEEeCCCEEEEE-----eCCCcEEEEEcCC
Q 001287 45 HIQRLLAIATLDG---R--IKVIGGDGI--EGLLI-----SPSQLPYKNLEFLQNQGFLISI-----TNDNEIQVWSLES 107 (1107)
Q Consensus 45 p~~~~LA~Gs~dg---~--I~iw~~~~~--~~~~~-----~~h~~~V~~l~fs~d~~~L~S~-----s~d~~I~vWDl~s 107 (1107)
|+|++++....++ + |.+.+..+. +.++- .+|...+..++|||||.+|+-+ +.+.+|++||+.+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 7899998877654 3 444444332 22221 2455679999999999998843 3346899999999
Q ss_pred Ceee-eeeccCCCeEEEEEecCCCEEEEEcCCCc-------------EEEEEeecCCCceeecceeecccccccccCCCC
Q 001287 108 RSLA-CCLKWESNITAFSVISGSHFMYIGDENGL-------------MSVIKYDADEGKLFQLPYNISADALSEKAGFPL 173 (1107)
Q Consensus 108 ~~~~-~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~-------------V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~ 173 (1107)
++.+ ...........++|+|+++.|+.++.+.. |++|++......-.. .+..+.+.
T Consensus 157 g~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~l-v~~~~~~~--------- 226 (695)
T 2bkl_A 157 GEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTV-VHERTGDP--------- 226 (695)
T ss_dssp CCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEE-EECCCCCT---------
T ss_pred CCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceE-EEecCCCC---------
Confidence 9875 22111112268899999999998887765 888887653211111 12233222
Q ss_pred CCCCCeEEEEcccCCCCCEEEEEECCC----eEEEEEccCCEEEEEe
Q 001287 174 LSHQPVVGVLPHPNSSGNRVLIAYENA----LVILWDVSEAQIIFVG 216 (1107)
Q Consensus 174 ~~~~~V~~v~f~P~~~~~~ll~~~~dg----~V~vwdl~~~~~~~~~ 216 (1107)
..+.++.|+| +|++|++++.++ .|.+||..++....+.
T Consensus 227 ---~~~~~~~~Sp--DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~ 268 (695)
T 2bkl_A 227 ---TTFLQSDLSR--DGKYLFVYILRGWSENDVYWKRPGEKDFRLLV 268 (695)
T ss_dssp ---TCEEEEEECT--TSCCEEEEEEETTTEEEEEEECTTCSSCEEEE
T ss_pred ---EEEEEEEECC--CCCEEEEEEeCCCCceEEEEEcCCCCceEEee
Confidence 5688999988 677788777665 6666766555544444
No 184
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.11 E-value=1.3e-08 Score=112.32 Aligned_cols=194 Identities=9% Similarity=-0.020 Sum_probs=137.3
Q ss_pred CCCeEEEEEcCCCC-EEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeee
Q 001287 35 PATASILAFDHIQR-LLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACC 113 (1107)
Q Consensus 35 ~~~i~~lafsp~~~-~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~ 113 (1107)
..-+..++|+|+++ ++++++.++.|++|+..+. ......+...+.+++|++++.++++...++.|.+||..+++....
T Consensus 27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~ 105 (296)
T 3e5z_A 27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESI 105 (296)
T ss_dssp CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEE
T ss_pred CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEE
Confidence 44578899999998 8889999999999999776 444555677899999999988777776678999999988875443
Q ss_pred ec-----cCCCeEEEEEecCCCEEEEEcCC---------------CcEEEEEeecCCCceeecceeecccccccccCCCC
Q 001287 114 LK-----WESNITAFSVISGSHFMYIGDEN---------------GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPL 173 (1107)
Q Consensus 114 ~~-----~~~~Vt~l~~~~~~~~l~~g~~d---------------g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~ 173 (1107)
.. ....+..++++++++++++.... +.-.||.++.. +++.. +..+.
T Consensus 106 ~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~----~~~~~--------- 171 (296)
T 3e5z_A 106 ADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSA----PIRDR--------- 171 (296)
T ss_dssp ECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEE----EECCC---------
T ss_pred eeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEE----eecCC---------
Confidence 32 12356789999999877763211 12267888765 44432 22221
Q ss_pred CCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEcc-CCEE---EEEeCCccccccccccCCCCCCCCccccCCCCCCCCC
Q 001287 174 LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVS-EAQI---IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEE 249 (1107)
Q Consensus 174 ~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~-~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1107)
..+.+++|+| +++.+++.+.++.|.+||+. .+.+ ...... ..
T Consensus 172 ---~~~~gi~~s~--dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~-----------------------------~~ 217 (296)
T 3e5z_A 172 ---VKPNGLAFLP--SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTV-----------------------------EP 217 (296)
T ss_dssp ---SSEEEEEECT--TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECC-----------------------------SS
T ss_pred ---CCCccEEECC--CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeC-----------------------------CC
Confidence 4578999988 68777666678899999987 4444 112110 03
Q ss_pred CceeEEEeecCCCCEEEEEEcCCcEEEEeCC
Q 001287 250 KEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 250 ~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~ 280 (1107)
..+.++++. ++|+..++. ++.|.+|+..
T Consensus 218 ~~p~~i~~d-~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 218 GKTDGLRVD-AGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp SCCCSEEEB-TTSCEEEEE--TTEEEEECTT
T ss_pred CCCCeEEEC-CCCCEEEEc--CCeEEEECCC
Confidence 345568865 899866655 8889999975
No 185
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.10 E-value=2.8e-07 Score=101.13 Aligned_cols=195 Identities=10% Similarity=-0.001 Sum_probs=130.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeee-CCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeee-
Q 001287 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLI-SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC- 112 (1107)
Q Consensus 35 ~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~-~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~- 112 (1107)
...+.+++++++++++++...++.|.+|+..+...... ..+...+..+++.+++..+++...++.|..||.. ++...
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~ 92 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEY 92 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred CCCccceEECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEE
Confidence 35789999999999877665678999999873322222 2345679999999998877777768899999987 33322
Q ss_pred eec-cCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCC
Q 001287 113 CLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1107)
Q Consensus 113 ~~~-~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~ 191 (1107)
... ....+.++++++++.+.++...++.|.+|+. ++++.. +..+... ..+.++++.| ++.
T Consensus 93 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~---~g~~~~--~~~~~~~------------~~~~~i~~~~--~g~ 153 (299)
T 2z2n_A 93 TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD---DGKIRE--YELPNKG------------SYPSFITLGS--DNA 153 (299)
T ss_dssp ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT---TCCEEE--EECSSTT------------CCEEEEEECT--TSC
T ss_pred eCCCcCCCceeeEECCCCCEEEEecCCceEEEECC---CCCEEE--ecCCCCC------------CCCceEEEcC--CCC
Confidence 111 3457899999998887777667777766554 344432 2222221 4688999976 677
Q ss_pred EEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcC
Q 001287 192 RVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID 271 (1107)
Q Consensus 192 ~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~d 271 (1107)
.+++...++.|..||. +++...+... .....+.++++. ++|...++...+
T Consensus 154 l~v~~~~~~~i~~~~~-~g~~~~~~~~----------------------------~~~~~~~~i~~~-~~g~l~v~~~~~ 203 (299)
T 2z2n_A 154 LWFTENQNNAIGRITE-SGDITEFKIP----------------------------TPASGPVGITKG-NDDALWFVEIIG 203 (299)
T ss_dssp EEEEETTTTEEEEECT-TCCEEEEECS----------------------------STTCCEEEEEEC-TTSSEEEEETTT
T ss_pred EEEEeCCCCEEEEEcC-CCcEEEeeCC----------------------------CCCCcceeEEEC-CCCCEEEEccCC
Confidence 4554555788999998 6655433111 002346678864 788866665567
Q ss_pred CcEEEEeC
Q 001287 272 GDILLWNT 279 (1107)
Q Consensus 272 G~I~lWd~ 279 (1107)
+.|.+|+.
T Consensus 204 ~~i~~~~~ 211 (299)
T 2z2n_A 204 NKIGRITT 211 (299)
T ss_dssp TEEEEECT
T ss_pred ceEEEECC
Confidence 77888876
No 186
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.10 E-value=9e-09 Score=115.76 Aligned_cols=202 Identities=12% Similarity=0.063 Sum_probs=140.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcc--eeee---------CCCCCCEEEEEEEe-CCCEEEEEe-CCCcE
Q 001287 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE--GLLI---------SPSQLPYKNLEFLQ-NQGFLISIT-NDNEI 100 (1107)
Q Consensus 34 ~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~--~~~~---------~~h~~~V~~l~fs~-d~~~L~S~s-~d~~I 100 (1107)
.-..+..++++|+++++++.+.+++|++|+.++.. +... ..+-.....|+|++ ++..+++-+ .++.|
T Consensus 89 ~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I 168 (329)
T 3fvz_A 89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI 168 (329)
T ss_dssp TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence 34578899999999999999889999999987652 3222 23444689999999 777777776 68999
Q ss_pred EEEEcCCCeeeeeeccC-----------CCeEEEEEecC-CCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccc
Q 001287 101 QVWSLESRSLACCLKWE-----------SNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEK 168 (1107)
Q Consensus 101 ~vWDl~s~~~~~~~~~~-----------~~Vt~l~~~~~-~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~ 168 (1107)
.+|| ..+..+..+... .....++++++ +.++++...++.|++|+.+ ++++... +..+.+.
T Consensus 169 ~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~--~G~~~~~-~~~~~~~---- 240 (329)
T 3fvz_A 169 VQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD--TKEFVRE-IKHASFG---- 240 (329)
T ss_dssp EEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT--TCCEEEE-ECCTTTT----
T ss_pred EEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC--CCcEEEE-EeccccC----
Confidence 9999 556666555321 23889999999 4555555567878777765 4566542 2222222
Q ss_pred cCCCCCCCCCeEEEEcccCCCCCEEEE-------EECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccC
Q 001287 169 AGFPLLSHQPVVGVLPHPNSSGNRVLI-------AYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEG 241 (1107)
Q Consensus 169 ~~~~~~~~~~V~~v~f~P~~~~~~ll~-------~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1107)
..+.+++|+| +..+.+ .+.+..|++||..+++++...+...
T Consensus 241 --------~~~~~~~~~p---g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~--------------------- 288 (329)
T 3fvz_A 241 --------RNVFAISYIP---GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR--------------------- 288 (329)
T ss_dssp --------TCEEEEEEET---TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSS---------------------
T ss_pred --------CCcceeeecC---CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCC---------------------
Confidence 5688999988 321222 2234489999999998877653200
Q ss_pred CCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCC
Q 001287 242 ISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1107)
Q Consensus 242 ~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~ 281 (1107)
.....+.++++ +|+|..+++...++.|++|++..
T Consensus 289 -----~~~~~p~~ia~-~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 289 -----KHFDMPHDIVA-SEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp -----SCCSSEEEEEE-CTTSEEEEEESSSCCEEEEEEEE
T ss_pred -----CccCCeeEEEE-CCCCCEEEEECCCCEEEEEeCCc
Confidence 01345778996 59998888888899999999864
No 187
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.08 E-value=3.4e-07 Score=100.44 Aligned_cols=155 Identities=10% Similarity=0.078 Sum_probs=103.3
Q ss_pred CCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee--ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCc
Q 001287 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL--KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK 152 (1107)
Q Consensus 75 h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~--~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~ 152 (1107)
+...+.+|++.+++..+++...++.|.+||.. ++..... .....+.++++++++.+.++...++.|..|+.+ +.
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~---g~ 88 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK---GI 88 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT---SC
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC---Cc
Confidence 44679999999998877776668899999998 6544322 234679999999999877776667867665533 33
Q ss_pred eeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCC
Q 001287 153 LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPS 232 (1107)
Q Consensus 153 l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~ 232 (1107)
+.. +.++... ..+.++++.| ++.++++...++.|.+||. +++.......
T Consensus 89 ~~~--~~~~~~~------------~~~~~i~~~~--~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~-------------- 137 (299)
T 2z2n_A 89 IKE--YTLPNPD------------SAPYGITEGP--NGDIWFTEMNGNRIGRITD-DGKIREYELP-------------- 137 (299)
T ss_dssp EEE--EECSSTT------------CCEEEEEECT--TSCEEEEETTTTEEEEECT-TCCEEEEECS--------------
T ss_pred EEE--EeCCCcC------------CCceeeEECC--CCCEEEEecCCceEEEECC-CCCEEEecCC--------------
Confidence 332 2233211 5689999976 6774555556788999998 5544332211
Q ss_pred CCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeC
Q 001287 233 EGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 279 (1107)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~ 279 (1107)
.....+.++++. ++|...++...++.|..||.
T Consensus 138 --------------~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~ 169 (299)
T 2z2n_A 138 --------------NKGSYPSFITLG-SDNALWFTENQNNAIGRITE 169 (299)
T ss_dssp --------------STTCCEEEEEEC-TTSCEEEEETTTTEEEEECT
T ss_pred --------------CCCCCCceEEEc-CCCCEEEEeCCCCEEEEEcC
Confidence 002356778864 88877666666677877776
No 188
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.05 E-value=3.3e-09 Score=120.32 Aligned_cols=178 Identities=15% Similarity=0.038 Sum_probs=126.4
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCcc-----------eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEc
Q 001287 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIE-----------GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL 105 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~-----------~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl 105 (1107)
.++.|++++..+++++|+.++ +++|+..... .....++.. |+.|+| |+.+|+.+ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 488999999999999999985 5669863222 212335667 999999 87888888 8899999999
Q ss_pred CCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEc
Q 001287 106 ESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1107)
Q Consensus 106 ~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f 184 (1107)
.+....... .+...|.++.+.+. .+++++.||.|++|++.. +...+ + . ..|.|++|
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~--~~~~~----~---~------------~~Vs~v~W 170 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRT--KSTKQ----L---A------------QNVTSFDV 170 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTT--CCEEE----E---E------------ESEEEEEE
T ss_pred hhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccC--Ccccc----c---c------------CCceEEEE
Confidence 877543333 45667777766544 388899999999999874 22221 1 1 46999999
Q ss_pred ccCCCCCEEEEEECCCeEEEEEccCCEE--EEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCC
Q 001287 185 HPNSSGNRVLIAYENALVILWDVSEAQI--IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1107)
Q Consensus 185 ~P~~~~~~ll~~~~dg~V~vwdl~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg 262 (1107)
+| .| +++|..||.+++|+.....+ ...... + . .+.++..+...|.+++|. +++
T Consensus 171 Sp--kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~---------------P-p----~~~~~~~~~~~V~sI~wl-~~~ 225 (388)
T 1xip_A 171 TN--SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSL---------------P-S----ELEELPVEEYSPLSVTIL-SPQ 225 (388)
T ss_dssp CS--SE--EEEEETTSCEEEEEEETTEEEEEEEECC---------------C-H----HHHTSCTTTSEEEEEEES-SSS
T ss_pred cC--Cc--eEEEEcCCcEEEEcCCCccccccceecC---------------C-c----ccccccCCCeeEEEEEEe-cCC
Confidence 98 45 78899999999999988875 322210 0 0 000001126789999998 788
Q ss_pred CEEEE
Q 001287 263 SILAV 267 (1107)
Q Consensus 263 ~~l~s 267 (1107)
.++++
T Consensus 226 ~flv~ 230 (388)
T 1xip_A 226 DFLAV 230 (388)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 77764
No 189
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.03 E-value=7.1e-08 Score=108.25 Aligned_cols=206 Identities=13% Similarity=0.122 Sum_probs=140.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceee-eCCCCCCEEEEEEEeCCCEEEEEeCC----CcEEEEEcCC
Q 001287 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLL-ISPSQLPYKNLEFLQNQGFLISITND----NEIQVWSLES 107 (1107)
Q Consensus 33 G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~-~~~h~~~V~~l~fs~d~~~L~S~s~d----~~I~vWDl~s 107 (1107)
+....+.+++|+|+++++++++.++.|++|+.++.+... ...+...+.+++|++++.++++...+ +.|.+||..+
T Consensus 42 ~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~ 121 (333)
T 2dg1_A 42 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG 121 (333)
T ss_dssp SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCC
Confidence 445567899999999988899999999999987655443 33566789999999998877777666 6899999998
Q ss_pred Ceeeeee---ccCCCeEEEEEecCCCEEEEEcC----CCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeE
Q 001287 108 RSLACCL---KWESNITAFSVISGSHFMYIGDE----NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1107)
Q Consensus 108 ~~~~~~~---~~~~~Vt~l~~~~~~~~l~~g~~----dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1107)
+.....+ .....+.+++++++++++++... ++...||.++...+++... .... ..+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~------------~~~~ 185 (333)
T 2dg1_A 122 DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI----IQNI------------SVAN 185 (333)
T ss_dssp CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE----EEEE------------SSEE
T ss_pred CEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEe----ecCC------------Cccc
Confidence 8765333 23457899999999987665543 1245678887655454431 1111 3478
Q ss_pred EEEcccCCCCCEEEEE-ECCCeEEEEEccC-CE-EEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEe
Q 001287 181 GVLPHPNSSGNRVLIA-YENALVILWDVSE-AQ-IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCW 257 (1107)
Q Consensus 181 ~v~f~P~~~~~~ll~~-~~dg~V~vwdl~~-~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w 257 (1107)
+++|+| +++.|+++ ..++.|.+||+.+ +. ............. ....+..+++
T Consensus 186 ~i~~~~--dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~-----------------------~~~~~~~i~~ 240 (333)
T 2dg1_A 186 GIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFT-----------------------GHEGPDSCCI 240 (333)
T ss_dssp EEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECC-----------------------SSSEEEEEEE
T ss_pred ceEECC--CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecC-----------------------CCCCCCceEE
Confidence 899987 67656554 4578999999863 22 2111000000000 0124667886
Q ss_pred ecCCCCEEEEEEcCCcEEEEeCC
Q 001287 258 ASSSGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 258 ~spdg~~l~sg~~dG~I~lWd~~ 280 (1107)
. ++|..+++...++.|.+||..
T Consensus 241 d-~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 241 D-SDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp B-TTCCEEEEEETTTEEEEECTT
T ss_pred C-CCCCEEEEEcCCCEEEEECCC
Confidence 5 899988887788999999874
No 190
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.01 E-value=3.6e-08 Score=123.96 Aligned_cols=150 Identities=8% Similarity=0.014 Sum_probs=94.6
Q ss_pred CCCCEEEEEECCCc---EEEEe--CC---Cc-ceee------eCCCCCCEEEEEEEeCCCEEEEEeCC-----CcEEEEE
Q 001287 45 HIQRLLAIATLDGR---IKVIG--GD---GI-EGLL------ISPSQLPYKNLEFLQNQGFLISITND-----NEIQVWS 104 (1107)
Q Consensus 45 p~~~~LA~Gs~dg~---I~iw~--~~---~~-~~~~------~~~h~~~V~~l~fs~d~~~L~S~s~d-----~~I~vWD 104 (1107)
|+|++++....++. -.||- .. +. ...+ ..+|...+..++|||||.+|+.++.+ .+|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 89999988776533 45554 33 22 2222 22344478999999999999887754 4699999
Q ss_pred cCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCc--------------EEEEEeecCCCceeecceeecccccccccC
Q 001287 105 LESRSLACCLKWESNITAFSVISGSHFMYIGDENGL--------------MSVIKYDADEGKLFQLPYNISADALSEKAG 170 (1107)
Q Consensus 105 l~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~--------------V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~ 170 (1107)
+.+++.+........+..++|+|+ +.|+.+..++. |++|++......-. ..|..+.+.
T Consensus 196 l~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~-lv~~~~~~~------ 267 (741)
T 1yr2_A 196 VADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQ-PVFATPELP------ 267 (741)
T ss_dssp TTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCE-EEECCTTCT------
T ss_pred CCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCE-EEeccCCCC------
Confidence 999987654322223467899999 98888876554 66666543211101 012222111
Q ss_pred CCCCCCCCeEEEEcccCCCCCEEEEEECCC-----eEEEEEccCC
Q 001287 171 FPLLSHQPVVGVLPHPNSSGNRVLIAYENA-----LVILWDVSEA 210 (1107)
Q Consensus 171 ~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg-----~V~vwdl~~~ 210 (1107)
..+.++.|+| +|++|+....++ .|.+||+.++
T Consensus 268 ------~~~~~~~~Sp--DG~~l~~~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 268 ------KRGHGASVSS--DGRWVVITSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp ------TCEEEEEECT--TSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred ------eEEEEEEECC--CCCEEEEEEEccCCCcceEEEEECCCC
Confidence 3588999988 788788777544 7778887665
No 191
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.98 E-value=1.4e-08 Score=126.95 Aligned_cols=200 Identities=9% Similarity=0.027 Sum_probs=134.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCC-----cEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCc---------
Q 001287 34 IPATASILAFDHIQRLLAIATLDG-----RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNE--------- 99 (1107)
Q Consensus 34 ~~~~i~~lafsp~~~~LA~Gs~dg-----~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~--------- 99 (1107)
+...+..++|||||++||.+..++ .|++||+.+.+.+........+..++|+||+..|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~ 202 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET 202 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCcccccccccc
Confidence 334578899999999999987654 899999987766533222334778999999999999988765
Q ss_pred -------EEEEEcCCCee----eeee-ccCCCeEEEEEecCCCEEEEEcC-----CCcEEEEEeec------CCCceeec
Q 001287 100 -------IQVWSLESRSL----ACCL-KWESNITAFSVISGSHFMYIGDE-----NGLMSVIKYDA------DEGKLFQL 156 (1107)
Q Consensus 100 -------I~vWDl~s~~~----~~~~-~~~~~Vt~l~~~~~~~~l~~g~~-----dg~V~vw~~d~------~~~~l~~~ 156 (1107)
|.+|++.+++. +... .+...+..++|+|++++|+.+.. +..|++|+++. ....+..
T Consensus 203 ~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~- 281 (710)
T 2xdw_A 203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK- 281 (710)
T ss_dssp CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE-
T ss_pred ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE-
Confidence 99999988762 2121 23455789999999999988765 45677777654 1112222
Q ss_pred ceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCC----eEEEEEccCCE---EEEEeCCccccccccccC
Q 001287 157 PYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA----LVILWDVSEAQ---IIFVGGGKDLQLKDGVVD 229 (1107)
Q Consensus 157 ~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg----~V~vwdl~~~~---~~~~~g~~~~~~~~~~~~ 229 (1107)
+..+. ..+.. .|+| +|..|+..+..+ .|.+||+.++. ...+..+.
T Consensus 282 ---l~~~~------------~~~~~-~~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---------- 333 (710)
T 2xdw_A 282 ---LIDNF------------EGEYD-YVTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH---------- 333 (710)
T ss_dssp ---EECSS------------SSCEE-EEEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC----------
T ss_pred ---eeCCC------------CcEEE-EEec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC----------
Confidence 33222 33443 3656 577677766533 68999988763 13333220
Q ss_pred CCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcE--EEEeCCC
Q 001287 230 SPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDI--LLWNTST 281 (1107)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I--~lWd~~~ 281 (1107)
+...+.+++|. +++..+++...+|.. .+|++.+
T Consensus 334 ------------------~~~~~~~~~~~-~~~~lv~~~~~~g~~~l~~~~~~~ 368 (710)
T 2xdw_A 334 ------------------EKDVLEWVACV-RSNFLVLCYLHDVKNTLQLHDLAT 368 (710)
T ss_dssp ------------------SSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTT
T ss_pred ------------------CCCeEEEEEEE-cCCEEEEEEEECCEEEEEEEECCC
Confidence 02357788886 778888888888854 5556533
No 192
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.97 E-value=5.4e-08 Score=107.33 Aligned_cols=198 Identities=10% Similarity=0.064 Sum_probs=131.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCccee-eeCCC----CCCEEEEEEEeCCCEEEEEeC------------
Q 001287 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPS----QLPYKNLEFLQNQGFLISITN------------ 96 (1107)
Q Consensus 34 ~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~-~~~~h----~~~V~~l~fs~d~~~L~S~s~------------ 96 (1107)
....+.+++++|+++++++...++.|.+|+....+.. +.... ...+..++|+++|.++++-+.
T Consensus 67 ~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~ 146 (296)
T 3e5z_A 67 PSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGG 146 (296)
T ss_dssp SCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCC
T ss_pred CCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccc
Confidence 4456889999999998877777789999998443333 22111 224678999999988887431
Q ss_pred -----CCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCce-eecceeecccccccccC
Q 001287 97 -----DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL-FQLPYNISADALSEKAG 170 (1107)
Q Consensus 97 -----d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l-~~~~~~i~~~~~~~~~~ 170 (1107)
.+.|..+|.. ++..........+..++|+|+++++++...++.|++|+++. ++++ ... ..+..+
T Consensus 147 ~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~-~g~~~~~~-~~~~~~------- 216 (296)
T 3e5z_A 147 EMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNA-RGETEYQG-VHFTVE------- 216 (296)
T ss_dssp CCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECS-SSCEEEEE-EEECCS-------
T ss_pred cccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECC-CCcCcCCC-eEeeCC-------
Confidence 2345555554 55444445556788999999999887777788898888863 3554 211 112111
Q ss_pred CCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCC
Q 001287 171 FPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEK 250 (1107)
Q Consensus 171 ~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1107)
...+.++++.| +|. |.++. ++.|.+||........+..+ ..
T Consensus 217 -----~~~p~~i~~d~--~G~-l~v~~-~~~v~~~~~~g~~~~~~~~~------------------------------~~ 257 (296)
T 3e5z_A 217 -----PGKTDGLRVDA--GGL-IWASA-GDGVHVLTPDGDELGRVLTP------------------------------QT 257 (296)
T ss_dssp -----SSCCCSEEEBT--TSC-EEEEE-TTEEEEECTTSCEEEEEECS------------------------------SC
T ss_pred -----CCCCCeEEECC--CCC-EEEEc-CCeEEEECCCCCEEEEEECC------------------------------CC
Confidence 14567788976 687 56666 88999999985444333322 34
Q ss_pred ceeEEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 251 EISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 251 ~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
+++++|.+++++.|++++.+| |.-++..+.
T Consensus 258 -~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 258 -TSNLCFGGPEGRTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp -CCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred -ceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence 888997668999999998875 444455443
No 193
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.96 E-value=2.1e-06 Score=94.12 Aligned_cols=195 Identities=8% Similarity=0.002 Sum_probs=128.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCccee-eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeee
Q 001287 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACC 113 (1107)
Q Consensus 35 ~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~ 113 (1107)
...+.++++++++++.++...++.|.+|+..+.... ....+...+..+++.+++...++...++.|.+||.. ++....
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~ 97 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEY 97 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEe
Confidence 357889999999998877767899999998732222 222334679999999998777776667889999988 554322
Q ss_pred e-c-cCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCC
Q 001287 114 L-K-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1107)
Q Consensus 114 ~-~-~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~ 191 (1107)
. . ....+.++++++++++.++...++.|..+ +.. +++.. +.++... ..+.++++.| ++.
T Consensus 98 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~--~~~-g~~~~--~~~~~~~------------~~~~~i~~d~--~g~ 158 (300)
T 2qc5_A 98 PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKL--TAD-GTIYE--YDLPNKG------------SYPAFITLGS--DNA 158 (300)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEE--CTT-SCEEE--EECSSTT------------CCEEEEEECT--TSS
T ss_pred cCCCCCCCCccceECCCCCEEEEccCCCeEEEE--CCC-CCEEE--ccCCCCC------------CCceeEEECC--CCC
Confidence 2 1 23678999999988877766667766554 443 44442 2233211 5688999976 677
Q ss_pred EEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcC
Q 001287 192 RVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID 271 (1107)
Q Consensus 192 ~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~d 271 (1107)
..++...++.|..||. .++...+... .....+.++++. ++|...++....
T Consensus 159 l~v~~~~~~~i~~~~~-~g~~~~~~~~----------------------------~~~~~~~~i~~d-~~g~l~v~~~~~ 208 (300)
T 2qc5_A 159 LWFTENQNNSIGRITN-TGKLEEYPLP----------------------------TNAAAPVGITSG-NDGALWFVEIMG 208 (300)
T ss_dssp EEEEETTTTEEEEECT-TCCEEEEECS----------------------------STTCCEEEEEEC-TTSSEEEEETTT
T ss_pred EEEEecCCCeEEEECC-CCcEEEeeCC----------------------------CCCCCcceEEEC-CCCCEEEEccCC
Confidence 4444445778899988 4444332110 002346677754 788766655556
Q ss_pred CcEEEEeC
Q 001287 272 GDILLWNT 279 (1107)
Q Consensus 272 G~I~lWd~ 279 (1107)
+.|.+|+.
T Consensus 209 ~~i~~~~~ 216 (300)
T 2qc5_A 209 NKIGRITT 216 (300)
T ss_dssp TEEEEECT
T ss_pred CEEEEEcC
Confidence 66777765
No 194
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.93 E-value=2.7e-08 Score=108.67 Aligned_cols=189 Identities=9% Similarity=0.045 Sum_probs=135.5
Q ss_pred CCCEEEEEECCCcEEEEeCCCccee-eeCCCC-CCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeeccC--CCeE
Q 001287 46 IQRLLAIATLDGRIKVIGGDGIEGL-LISPSQ-LPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE--SNIT 121 (1107)
Q Consensus 46 ~~~~LA~Gs~dg~I~iw~~~~~~~~-~~~~h~-~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~--~~Vt 121 (1107)
.+++|++++.|+.|++||....+.+ ....+. ..+.++.++|+|..|+ +.++.|..||. +++.+..+... ..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 4688999999999999999444444 444444 4789999999998888 45788999999 78888877543 4788
Q ss_pred EEEEecCCCEEEEEcC-CCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCC
Q 001287 122 AFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA 200 (1107)
Q Consensus 122 ~l~~~~~~~~l~~g~~-dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg 200 (1107)
++.+.++++++++.+. ++ +++.++. +|+++.. +.+.... . .....+..+.+.+ +|+++++.+.++
T Consensus 81 ~~~~~~dG~~lv~~~~~~~--~v~~vd~-~Gk~l~~-~~~~~~~-------~-~~~~~~~~v~~~~--~G~~lv~~~~~~ 146 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPS--TILEVNM-KGEVLSK-TEFETGI-------E-RPHAQFRQINKNK--KGNYLVPLFATS 146 (276)
T ss_dssp EEEECTTSCEEEEEESTTE--EEEEECT-TSCEEEE-EEECCSC-------S-SGGGSCSCCEECT--TSCEEEEETTTT
T ss_pred ccEECCCCCEEEEecCCCC--EEEEEeC-CCCEEEE-EeccCCC-------C-cccccccCceECC--CCCEEEEecCCC
Confidence 9999999999998876 55 5566665 4665532 3222110 0 0002233445544 788888888999
Q ss_pred eEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCC
Q 001287 201 LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 201 ~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~ 280 (1107)
.|.+||.+ ++.++.++. ...+.++... ++|+.++++..++.|..+|..
T Consensus 147 ~v~~~d~~-G~~~w~~~~------------------------------~~~~~~~~~~-~~g~~~v~~~~~~~v~~~d~~ 194 (276)
T 3no2_A 147 EVREIAPN-GQLLNSVKL------------------------------SGTPFSSAFL-DNGDCLVACGDAHCFVQLNLE 194 (276)
T ss_dssp EEEEECTT-SCEEEEEEC------------------------------SSCCCEEEEC-TTSCEEEECBTTSEEEEECTT
T ss_pred EEEEECCC-CCEEEEEEC------------------------------CCCccceeEc-CCCCEEEEeCCCCeEEEEeCc
Confidence 99999998 887776643 2233445544 899999999888899999988
Q ss_pred CCC
Q 001287 281 TTA 283 (1107)
Q Consensus 281 ~~~ 283 (1107)
+++
T Consensus 195 tG~ 197 (276)
T 3no2_A 195 SNR 197 (276)
T ss_dssp TCC
T ss_pred CCc
Confidence 663
No 195
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.93 E-value=1.2e-07 Score=102.78 Aligned_cols=196 Identities=11% Similarity=0.047 Sum_probs=129.6
Q ss_pred CeEEEEEcCCCCEEE-EEECCCcEEEEeCCCcceeee-CCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee
Q 001287 37 TASILAFDHIQRLLA-IATLDGRIKVIGGDGIEGLLI-SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA-~Gs~dg~I~iw~~~~~~~~~~-~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~ 114 (1107)
.+..++++|++++++ +.+.++.|.+|+..+...... ..+...+..|+|.+++..+++.. ++.|.+||..++......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 688999999999777 446789999999765443322 23335678999999987555555 889999998877543322
Q ss_pred -ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEE
Q 001287 115 -KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1107)
Q Consensus 115 -~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~l 193 (1107)
.....+.+++++++++++++...++.|.+|+ ......... .... ...+.++++.| ++..+
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~--~~~~~~~~~---~~~~------------~~~p~~i~~~~--~g~l~ 164 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLA--AGSKTQTVL---PFTG------------LNDPDGVAVDN--SGNVY 164 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEEC--TTCCSCEEC---CCCS------------CCSCCCEEECT--TCCEE
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEEE--CCCceeEee---cccc------------CCCceeEEEeC--CCCEE
Confidence 2225789999999988666666778777663 322221110 1110 13577888977 67755
Q ss_pred EEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCc
Q 001287 194 LIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGD 273 (1107)
Q Consensus 194 l~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~ 273 (1107)
++...++.|.+||..+......... ....+.++++. ++|..+++...++.
T Consensus 165 v~~~~~~~i~~~~~~~~~~~~~~~~-----------------------------~~~~p~~i~~d-~~g~l~v~~~~~~~ 214 (270)
T 1rwi_B 165 VTDTDNNRVVKLEAESNNQVVLPFT-----------------------------DITAPWGIAVD-EAGTVYVTEHNTNQ 214 (270)
T ss_dssp EEEGGGTEEEEECTTTCCEEECCCS-----------------------------SCCSEEEEEEC-TTCCEEEEETTTSC
T ss_pred EEECCCCEEEEEecCCCceEeeccc-----------------------------CCCCceEEEEC-CCCCEEEEECCCCc
Confidence 5555678999999887654432110 02456788865 89977777777889
Q ss_pred EEEEeCCCC
Q 001287 274 ILLWNTSTT 282 (1107)
Q Consensus 274 I~lWd~~~~ 282 (1107)
|.+|+..+.
T Consensus 215 v~~~~~~~~ 223 (270)
T 1rwi_B 215 VVKLLAGST 223 (270)
T ss_dssp EEEECTTCS
T ss_pred EEEEcCCCC
Confidence 999998643
No 196
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.90 E-value=2.9e-07 Score=103.87 Aligned_cols=154 Identities=9% Similarity=-0.091 Sum_probs=103.1
Q ss_pred EEEEeCCCEEEEEeC-----CCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcC----------CCcEEEEEe
Q 001287 82 LEFLQNQGFLISITN-----DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDE----------NGLMSVIKY 146 (1107)
Q Consensus 82 l~fs~d~~~L~S~s~-----d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~----------dg~V~vw~~ 146 (1107)
....|++.+++.... ++.|.+.|..+++.+..+....... ++++|+++++++++. ++.|.+||.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 445788888888875 6789999999999998886444344 999999999998862 566777765
Q ss_pred ecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEEC--CCeEEEEEccCCEEEEEeCCcccccc
Q 001287 147 DADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE--NALVILWDVSEAQIIFVGGGKDLQLK 224 (1107)
Q Consensus 147 d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~--dg~V~vwdl~~~~~~~~~g~~~~~~~ 224 (1107)
.. ++.... ..++... .. ........++|+| +|++++++.. ++.|.++|+.+++++....-
T Consensus 117 ~t--~~v~~~-I~v~~g~---r~----~~g~~P~~~a~sp--DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v------ 178 (386)
T 3sjl_D 117 VT--LLPTAD-IELPDAP---RF----LVGTYPWMTSLTP--DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV------ 178 (386)
T ss_dssp TT--CCEEEE-EEETTCC---CC----CBSCCGGGEEECT--TSSEEEEEECSSSCEEEEEETTTTEEEEEEEC------
T ss_pred CC--CeEEEE-EECCCcc---cc----ccCCCCceEEEcC--CCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC------
Confidence 43 454432 2222100 00 0002456788977 7888888864 68999999999988754421
Q ss_pred ccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCC
Q 001287 225 DGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1107)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~ 281 (1107)
.+ . ... .....+.+++.+.||.+.+.++.+
T Consensus 179 ------------------------~g-~-~~~-~P~g~~~~~~~~~DG~~~~v~~~~ 208 (386)
T 3sjl_D 179 ------------------------PD-C-YHI-FPTAPDTFFMHCRDGSLAKVAFGT 208 (386)
T ss_dssp ------------------------CS-E-EEE-EEEETTEEEEEETTSCEEEEECCS
T ss_pred ------------------------CC-c-cee-ecCCCceeEEECCCCCEEEEECCC
Confidence 11 0 112 223446777888899988888754
No 197
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.89 E-value=8.2e-07 Score=98.39 Aligned_cols=213 Identities=10% Similarity=0.029 Sum_probs=136.4
Q ss_pred cceeeeecCCCCCeEEEEEcCCCCEEEE-------EECCCcEEEEeCCCcceeeeCC-----CCCCEEEEEEEeCCCEEE
Q 001287 25 NLRIAVHYGIPATASILAFDHIQRLLAI-------ATLDGRIKVIGGDGIEGLLISP-----SQLPYKNLEFLQNQGFLI 92 (1107)
Q Consensus 25 ~~~~~~~~G~~~~i~~lafsp~~~~LA~-------Gs~dg~I~iw~~~~~~~~~~~~-----h~~~V~~l~fs~d~~~L~ 92 (1107)
+++.....+--..+.+++|+++++++++ ++.++.|.+|+....+...... +...+..++++++++.|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~ 86 (314)
T 1pjx_A 7 EPLFTKVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLF 86 (314)
T ss_dssp CCCCEEEECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEE
T ss_pred cHhHhhhhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEE
Confidence 3333333333345788999999998888 6788999999975544433222 456789999999944455
Q ss_pred EEeCCCcEEEEEcCCCeeeee-ecc-----CCCeEEEEEecCCCEEEEEcCCC-------------cEEEEEeecCCCce
Q 001287 93 SITNDNEIQVWSLESRSLACC-LKW-----ESNITAFSVISGSHFMYIGDENG-------------LMSVIKYDADEGKL 153 (1107)
Q Consensus 93 S~s~d~~I~vWDl~s~~~~~~-~~~-----~~~Vt~l~~~~~~~~l~~g~~dg-------------~V~vw~~d~~~~~l 153 (1107)
.++..+.|.+||.. ++.... ... ...+.++++++++++.++...++ ...||.++.. +++
T Consensus 87 v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~ 164 (314)
T 1pjx_A 87 VADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM 164 (314)
T ss_dssp EEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE
T ss_pred EEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCE
Confidence 55555689999998 765443 211 13588999999998766665441 2456777754 444
Q ss_pred eecceeecccccccccCCCCCCCCCeEEEEcc----cCCCCCEEEEE-ECCCeEEEEEcc-CCEEEEEeCCccccccccc
Q 001287 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPH----PNSSGNRVLIA-YENALVILWDVS-EAQIIFVGGGKDLQLKDGV 227 (1107)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~----P~~~~~~ll~~-~~dg~V~vwdl~-~~~~~~~~g~~~~~~~~~~ 227 (1107)
... .... ..+.+++++ | +++.++++ ..++.|.+||+. .++......... +
T Consensus 165 ~~~----~~~~------------~~~~~i~~~~~~d~--dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~--~---- 220 (314)
T 1pjx_A 165 IQV----DTAF------------QFPNGIAVRHMNDG--RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGH--I---- 220 (314)
T ss_dssp EEE----EEEE------------SSEEEEEEEECTTS--CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEE--C----
T ss_pred EEe----ccCC------------CCcceEEEecccCC--CCCEEEEEECCCCeEEEEECCCCCccccceEEEE--C----
Confidence 321 1111 346788887 6 56556555 457899999987 444321110000 0
Q ss_pred cCCCCCCCCccccCCCCCCCCC-CceeEEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 228 VDSPSEGDSTFLEGISEHQPEE-KEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~-~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
. ... ..+..+++. ++|..+++...++.|.+||..++
T Consensus 221 ----~--------------~~~~~~p~~i~~d-~~G~l~v~~~~~~~i~~~d~~~g 257 (314)
T 1pjx_A 221 ----P--------------GTHEGGADGMDFD-EDNNLLVANWGSSHIEVFGPDGG 257 (314)
T ss_dssp ----C--------------CCSSCEEEEEEEB-TTCCEEEEEETTTEEEEECTTCB
T ss_pred ----C--------------CCCCCCCCceEEC-CCCCEEEEEcCCCEEEEEcCCCC
Confidence 0 001 456778875 89998888888899999998754
No 198
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.88 E-value=3.5e-06 Score=92.27 Aligned_cols=155 Identities=7% Similarity=0.031 Sum_probs=100.7
Q ss_pred CCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeee-ec-cCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCc
Q 001287 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACC-LK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK 152 (1107)
Q Consensus 75 h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~-~~-~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~ 152 (1107)
....+.+|++.+++...++...++.|.+||.. ++.... +. ....+.++++++++++.++...++.|..+ +.. ++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~--d~~-g~ 93 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKL--SKK-GG 93 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEE--CTT-SC
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEE--CCC-CC
Confidence 34578899999998877777678999999988 654432 11 23578999999988876666667766554 443 44
Q ss_pred eeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCC
Q 001287 153 LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPS 232 (1107)
Q Consensus 153 l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~ 232 (1107)
... +.++... ..+.++++.| ++.++++...++.|..||.. ++.......
T Consensus 94 ~~~--~~~~~~~------------~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~-------------- 142 (300)
T 2qc5_A 94 FTE--YPLPQPD------------SGPYGITEGL--NGDIWFTQLNGDRIGKLTAD-GTIYEYDLP-------------- 142 (300)
T ss_dssp EEE--EECSSTT------------CCEEEEEECS--TTCEEEEETTTTEEEEECTT-SCEEEEECS--------------
T ss_pred eEE--ecCCCCC------------CCCccceECC--CCCEEEEccCCCeEEEECCC-CCEEEccCC--------------
Confidence 432 3333221 4588999976 67755555557888999987 554432210
Q ss_pred CCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeC
Q 001287 233 EGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 279 (1107)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~ 279 (1107)
.....+.++++. ++|+..++...++.|..|+.
T Consensus 143 --------------~~~~~~~~i~~d-~~g~l~v~~~~~~~i~~~~~ 174 (300)
T 2qc5_A 143 --------------NKGSYPAFITLG-SDNALWFTENQNNSIGRITN 174 (300)
T ss_dssp --------------STTCCEEEEEEC-TTSSEEEEETTTTEEEEECT
T ss_pred --------------CCCCCceeEEEC-CCCCEEEEecCCCeEEEECC
Confidence 003356777764 88885555555677777765
No 199
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.87 E-value=2.9e-08 Score=123.80 Aligned_cols=197 Identities=9% Similarity=-0.043 Sum_probs=132.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEE-----ECCCcEEEEeCCCcceeeeCCCCCCE--EEEEEEeCCCEEEEEeCCCc------
Q 001287 33 GIPATASILAFDHIQRLLAIA-----TLDGRIKVIGGDGIEGLLISPSQLPY--KNLEFLQNQGFLISITNDNE------ 99 (1107)
Q Consensus 33 G~~~~i~~lafsp~~~~LA~G-----s~dg~I~iw~~~~~~~~~~~~h~~~V--~~l~fs~d~~~L~S~s~d~~------ 99 (1107)
|+...+..++|||||++||.+ +.+..|++||+.+.+.+. ..+-..+ ..++|+||+..|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-CcccCcccccceEEecCCCEEEEEEecCCCCCccc
Confidence 344568899999999999954 445689999998766541 1222223 78999999999999998776
Q ss_pred -------EEEEEcCCCe----eeeee-ccCCCeEEEEEecCCCEEEEEcCCC--cEEEEEeecCCCceeecceeeccccc
Q 001287 100 -------IQVWSLESRS----LACCL-KWESNITAFSVISGSHFMYIGDENG--LMSVIKYDADEGKLFQLPYNISADAL 165 (1107)
Q Consensus 100 -------I~vWDl~s~~----~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg--~V~vw~~d~~~~~l~~~~~~i~~~~~ 165 (1107)
|.+|++.++. ++... .+...+..++++|++++|+++..++ ...||.++...+.+.. +..+.
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~----l~~~~- 271 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRL----LVKGV- 271 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEE----EEECS-
T ss_pred cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEE----eecCC-
Confidence 9999999876 22222 2345788999999999988777554 4556666554444443 22222
Q ss_pred ccccCCCCCCCCCeEEEEcccCCCCCEEEEEEC----CCeEEEEEccCCEE---EEEeCCccccccccccCCCCCCCCcc
Q 001287 166 SEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE----NALVILWDVSEAQI---IFVGGGKDLQLKDGVVDSPSEGDSTF 238 (1107)
Q Consensus 166 ~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~----dg~V~vwdl~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~ 238 (1107)
..+....+ | ++. +++.+. ++.|.+||+.++.. ..+..+
T Consensus 272 -----------~~~~~~~~-~--~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~-------------------- 316 (695)
T 2bkl_A 272 -----------GAKYEVHA-W--KDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPE-------------------- 316 (695)
T ss_dssp -----------SCCEEEEE-E--TTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECC--------------------
T ss_pred -----------CceEEEEe-c--CCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecC--------------------
Confidence 34555556 3 344 444443 57899999977541 333222
Q ss_pred ccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCC
Q 001287 239 LEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 239 ~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~ 280 (1107)
.....|.+++|. ++..+++...||..++|.+.
T Consensus 317 --------~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 317 --------DSSASLLSVSIV--GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp --------CSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEE
T ss_pred --------CCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEe
Confidence 003357778875 67788888999999888764
No 200
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.87 E-value=4.7e-06 Score=95.00 Aligned_cols=118 Identities=7% Similarity=-0.204 Sum_probs=78.0
Q ss_pred EEeCCCEEEEEeC--CC---cEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcC----------CCcEEEEEeec
Q 001287 84 FLQNQGFLISITN--DN---EIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDE----------NGLMSVIKYDA 148 (1107)
Q Consensus 84 fs~d~~~L~S~s~--d~---~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~----------dg~V~vw~~d~ 148 (1107)
..+++.+++.+.. .+ +|.++|..+++++..+.....- .++++|++++++++.. ++.|.+++..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~- 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV- 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC-
Confidence 3466666666653 22 8899999999988777544434 9999999999999863 5677777764
Q ss_pred CCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEEC--CCeEEEEEccCCEEEEE
Q 001287 149 DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE--NALVILWDVSEAQIIFV 215 (1107)
Q Consensus 149 ~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~--dg~V~vwdl~~~~~~~~ 215 (1107)
+.+.... ..+++.. .. ........+.++| +|++|+++.. ++.|.++| .+++++..
T Consensus 106 -t~~~~~~-i~~~~~~---~~----~~g~~p~~~~~sp--DG~~l~v~n~~~~~~v~viD-~t~~~~~~ 162 (373)
T 2mad_H 106 -TFLPIAD-IELPDAP---RF----DVGPYSWMNANTP--NNADLLFFQFAAGPAVGLVV-QGGSSDDQ 162 (373)
T ss_pred -CCcEEEE-EECCCcc---cc----ccCCCccceEECC--CCCEEEEEecCCCCeEEEEE-CCCCEEeE
Confidence 3344322 1121000 00 0002356889988 7888888874 57899999 98877644
No 201
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.83 E-value=6.1e-07 Score=112.69 Aligned_cols=152 Identities=10% Similarity=0.015 Sum_probs=92.0
Q ss_pred ccCCCCcEEEEEecCC-----cEEEEeCCCC--c-eeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccC----
Q 001287 490 KCHSVDRVYLAGYHDG-----SVRIWDATYP--V-FKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF---- 557 (1107)
Q Consensus 490 ~~s~~~~~laTgs~Dg-----tIriWd~~~~--~-l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~d---- 557 (1107)
.+++|++.|+..+.++ .|++||+.++ . +.. +..+...+... ++|+++.|+..+.+
T Consensus 274 ~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~------------l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~ 340 (741)
T 1yr2_A 274 SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTA------------LIPDLKAQWDF-VDGVGDQLWFVSGDGAPL 340 (741)
T ss_dssp EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEE------------EECSSSSCEEE-EEEETTEEEEEECTTCTT
T ss_pred EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEE------------ecCCCCceEEE-EeccCCEEEEEECCCCCC
Confidence 5678887777666543 6999998776 3 331 22333344444 35899888777653
Q ss_pred ceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcC-CCe
Q 001287 558 GLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN-LLS 636 (1107)
Q Consensus 558 g~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~-~~~ 636 (1107)
+.|.+|++.... . .+...+..+...+..++++ ++.++++...||..+||.+. .+.
T Consensus 341 ~~l~~~d~~~~~-~----------------------~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~ 396 (741)
T 1yr2_A 341 KKIVRVDLSGST-P----------------------RFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGK 396 (741)
T ss_dssp CEEEEEECSSSS-C----------------------EEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSC
T ss_pred CEEEEEeCCCCc-c----------------------ccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence 447777765521 0 1222233445557778887 66788888999987776553 233
Q ss_pred EEEEeecCCC-CCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEE-E---EcCCceEEEEeCCCcc
Q 001287 637 VLFFTDDISG-SSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVII-V---LFKDAKISIVGGSSEN 703 (1107)
Q Consensus 637 ~~~~~~~~~~-h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~-s---~s~Dg~v~v~d~~~g~ 703 (1107)
.. ..+.. ....|..+.+++ ++..|+ + .+..++|+.||..+|+
T Consensus 397 ~~---~~l~~~~~~~v~~~~~s~----------------------d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 397 PA---GAVSLPGIGSASGLSGRP----------------------GDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EE---EECBCSSSCEEEEEECCB----------------------TCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred ce---eeccCCCCeEEEEeecCC----------------------CCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 33 12232 355677777773 233343 3 3445899999998776
No 202
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.82 E-value=1.3e-07 Score=102.36 Aligned_cols=197 Identities=8% Similarity=0.027 Sum_probs=134.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeC-CCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee
Q 001287 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS-PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1107)
Q Consensus 36 ~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~-~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~ 114 (1107)
..+..++++++++++++.. ++.|++|+.++....... .....+..+++.+++..+++...++.|.+||..+.......
T Consensus 67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~ 145 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP 145 (270)
T ss_dssp CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC
T ss_pred CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec
Confidence 4678899999999665554 899999998776544333 33357899999999887777777889999987665433222
Q ss_pred -ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEE
Q 001287 115 -KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1107)
Q Consensus 115 -~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~l 193 (1107)
.....+.+++++++++++++...++.|++|+.+. ...... .... ...+.++++.| +|..+
T Consensus 146 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~--~~~~~~---~~~~------------~~~p~~i~~d~--~g~l~ 206 (270)
T 1rwi_B 146 FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES--NNQVVL---PFTD------------ITAPWGIAVDE--AGTVY 206 (270)
T ss_dssp CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT--CCEEEC---CCSS------------CCSEEEEEECT--TCCEE
T ss_pred cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC--CceEee---cccC------------CCCceEEEECC--CCCEE
Confidence 2234678899999998665656677777766542 222211 1111 14588999977 57645
Q ss_pred EEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCc
Q 001287 194 LIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGD 273 (1107)
Q Consensus 194 l~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~ 273 (1107)
++...++.|.+||..+......... ....+.++++. ++|+.+++...++.
T Consensus 207 v~~~~~~~v~~~~~~~~~~~~~~~~-----------------------------~~~~p~~i~~~-~~g~l~v~~~~~~~ 256 (270)
T 1rwi_B 207 VTEHNTNQVVKLLAGSTTSTVLPFT-----------------------------GLNTPLAVAVD-SDRTVYVADRGNDR 256 (270)
T ss_dssp EEETTTSCEEEECTTCSCCEECCCC-----------------------------SCSCEEEEEEC-TTCCEEEEEGGGTE
T ss_pred EEECCCCcEEEEcCCCCcceeeccC-----------------------------CCCCceeEEEC-CCCCEEEEECCCCE
Confidence 5555678899999876543321100 02457888875 99998888888999
Q ss_pred EEEEeCCCC
Q 001287 274 ILLWNTSTT 282 (1107)
Q Consensus 274 I~lWd~~~~ 282 (1107)
|++++....
T Consensus 257 v~~~~~~~~ 265 (270)
T 1rwi_B 257 VVKLTSLEH 265 (270)
T ss_dssp EEEECCCGG
T ss_pred EEEEcCCCc
Confidence 999998754
No 203
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.81 E-value=1.1e-06 Score=98.42 Aligned_cols=193 Identities=8% Similarity=-0.032 Sum_probs=131.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEe-CCCcEEEEEcCCCeeeeee
Q 001287 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLESRSLACCL 114 (1107)
Q Consensus 36 ~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s-~d~~I~vWDl~s~~~~~~~ 114 (1107)
..+..++++. +++.++...++.|.+||....+.+...........++|++++ +|..+. .++.|.+||..++++...+
T Consensus 44 ~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i 121 (328)
T 3dsm_A 44 DVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYI 121 (328)
T ss_dssp SCEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred ccceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEE
Confidence 4566788863 555556666799999999766654333445678999999997 555555 7899999999999988766
Q ss_pred ccCC------CeEEEEEecCCCEEEEEc--CCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEccc
Q 001287 115 KWES------NITAFSVISGSHFMYIGD--ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1107)
Q Consensus 115 ~~~~------~Vt~l~~~~~~~~l~~g~--~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P 186 (1107)
.... ....+++ ++..+++++ .++.|.+++.. ++++... ++.. ..+..+.+.|
T Consensus 122 ~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~--t~~~~~~---i~~g-------------~~p~~i~~~~ 181 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTE--TDKVVDE---LTIG-------------IQPTSLVMDK 181 (328)
T ss_dssp ECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETT--TTEEEEE---EECS-------------SCBCCCEECT
T ss_pred EcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECC--CCeEEEE---EEcC-------------CCccceEEcC
Confidence 5444 5667777 466677766 37777776654 4555532 3211 2356677866
Q ss_pred CCCCCEEEEEECC----------CeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEE
Q 001287 187 NSSGNRVLIAYEN----------ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALC 256 (1107)
Q Consensus 187 ~~~~~~ll~~~~d----------g~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~ 256 (1107)
++++++++..+ +.|.+||..++++...... . . ......++
T Consensus 182 --dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~---------~---~----------------g~~p~~la 231 (328)
T 3dsm_A 182 --YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF---------K---L----------------GDWPSEVQ 231 (328)
T ss_dssp --TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC---------C---T----------------TCCCEEEE
T ss_pred --CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEec---------C---C----------------CCCceeEE
Confidence 67644444443 7899999999887644321 0 0 12467788
Q ss_pred eecCCCCEEEEEEcCCcEEEEeCCCCC
Q 001287 257 WASSSGSILAVGYIDGDILLWNTSTTA 283 (1107)
Q Consensus 257 w~spdg~~l~sg~~dG~I~lWd~~~~~ 283 (1107)
|. |++++|+++.. .|.+||..+++
T Consensus 232 ~~-~d~~~lyv~~~--~v~~~d~~t~~ 255 (328)
T 3dsm_A 232 LN-GTRDTLYWINN--DIWRMPVEADR 255 (328)
T ss_dssp EC-TTSCEEEEESS--SEEEEETTCSS
T ss_pred Ee-cCCCEEEEEcc--EEEEEECCCCc
Confidence 74 99999988754 89999998764
No 204
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.80 E-value=8.9e-07 Score=99.92 Aligned_cols=192 Identities=9% Similarity=0.066 Sum_probs=126.1
Q ss_pred EEEcCCCCEEEEEEC-----CCcEEEEeCCCcceee-eCCCCCCEEEEEEEeCCCEEEEEe----------CCCcEEEEE
Q 001287 41 LAFDHIQRLLAIATL-----DGRIKVIGGDGIEGLL-ISPSQLPYKNLEFLQNQGFLISIT----------NDNEIQVWS 104 (1107)
Q Consensus 41 lafsp~~~~LA~Gs~-----dg~I~iw~~~~~~~~~-~~~h~~~V~~l~fs~d~~~L~S~s----------~d~~I~vWD 104 (1107)
....|+++.+.+... ++.|.++|....+++- +.....| . +.|+||+++|+.++ .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 456799999988876 6899999998776652 2223445 4 99999999887776 367899999
Q ss_pred cCCCeeeeeeccC--------CCeEEEEEecCCCEEEEEcC--CCcEEEEEeecCCCceeecceeecccccccccCCCCC
Q 001287 105 LESRSLACCLKWE--------SNITAFSVISGSHFMYIGDE--NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLL 174 (1107)
Q Consensus 105 l~s~~~~~~~~~~--------~~Vt~l~~~~~~~~l~~g~~--dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~ 174 (1107)
..+++.+..+... .....++++|++++++++.. ++.|.|+|.. ++++... ++.
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~--t~~vv~t---I~v------------ 178 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE--GKAFKRM---LDV------------ 178 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT--TTEEEEE---EEC------------
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECC--CCcEEEE---EEC------------
Confidence 9999988877432 24667999999999999974 5778776655 4566543 331
Q ss_pred CCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccC-CEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCcee
Q 001287 175 SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE-AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEIS 253 (1107)
Q Consensus 175 ~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt 253 (1107)
..+.. ..|. ....+++.+.||.+.+.++.. +++...... .+.. ....+.
T Consensus 179 --~g~~~--~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~-~~~~------------------------~~~~~~ 228 (386)
T 3sjl_D 179 --PDCYH--IFPT-APDTFFMHCRDGSLAKVAFGTEGTPEITHTE-VFHP------------------------EDEFLI 228 (386)
T ss_dssp --CSEEE--EEEE-ETTEEEEEETTSCEEEEECCSSSCCEEEECC-CCSC------------------------TTSCBC
T ss_pred --CCcce--eecC-CCceeEEECCCCCEEEEECCCCCeEEEeecc-eecc------------------------cccccc
Confidence 11111 1243 234577889999999999876 555321110 0000 011221
Q ss_pred -EEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 254 -ALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 254 -sl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
...|..++|+.++ .+.+|.+.+.|..+.
T Consensus 229 ~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~ 257 (386)
T 3sjl_D 229 NHPAYSQKAGRLVW-PTYTGKIHQIDLSSG 257 (386)
T ss_dssp SCCEEETTTTEEEE-EBTTSEEEEEECTTS
T ss_pred ccceeEcCCCcEEE-EeCCCEEEEEECCCC
Confidence 2344446776555 555788998888644
No 205
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.78 E-value=0.0018 Score=81.69 Aligned_cols=198 Identities=15% Similarity=0.158 Sum_probs=117.7
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCC----CEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeee
Q 001287 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQL----PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA 111 (1107)
Q Consensus 36 ~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~----~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~ 111 (1107)
..|.+|..+++|.+. +|+.+| +..||.............. .|.++...+++...+. +. +.|..||..+++..
T Consensus 88 n~I~~i~~d~~g~lW-igT~~G-l~~yd~~~~~f~~~~~~~~~~~~~i~~i~~d~~g~lwi~-t~-~gl~~~~~~~~~~~ 163 (795)
T 4a2l_A 88 DISRIVKTDSQGRVW-IGTRDG-LSRYDEEKDIFQNFFYEKNGKHLQVNGIEEISPEQLLIS-TP-EGLIMFDIKESKFI 163 (795)
T ss_dssp SCEEEEEECTTSCEE-EEESSC-EEEEETTTTEEEEECCEETTEECCCCEEEEEETTEEEEE-ET-TEEEEEETTTTEEE
T ss_pred cceeEEEECCCCCEE-EEeCCc-hheeCCCCCeEEeccccccCCCceEEEEEECCCCCEEEE-EC-CceEEEECCCCEEE
Confidence 458999999998866 577666 7889986554433222111 2889988888655554 43 56999998887654
Q ss_pred eeec-c-CCC-eEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCC
Q 001287 112 CCLK-W-ESN-ITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1107)
Q Consensus 112 ~~~~-~-~~~-Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1107)
.... . ... |.++..++++. +.+|+.++.++.++ ...+++... .... ....|.++...+
T Consensus 164 ~~~~~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~--~~~~~~~~~---~~~~-----------~~~~i~~i~~d~-- 224 (795)
T 4a2l_A 164 DDSFSTAMHKTIASTLYRQGDQ-IYIGTSTDGLYTYS--ITQKTFEKV---IPIL-----------GTKQIQAILQQS-- 224 (795)
T ss_dssp CSSSCHHHHTCCEEEEEEETTE-EEEEESSSCEEEEE--TTTCCEEEC---C---------------CCCEEEEEEEE--
T ss_pred eccCCCCCCcceEEEEECCCCC-EEEEECCCCEEEEe--CCCCeEEEe---cCCC-----------CCCeeEEEEEcC--
Confidence 3211 1 123 88888887775 45566654455544 333444321 0100 114588888754
Q ss_pred CCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEE
Q 001287 189 SGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1107)
Q Consensus 189 ~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg 268 (1107)
++. |.+++.++-+.+||..+++...+... ...+. ......|.+++.. ++|. |..|
T Consensus 225 ~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~-------------~~~~~---------~l~~~~i~~i~~d-~~g~-lWig 279 (795)
T 4a2l_A 225 PTR-IWVATEGAGLFLINPKTKEIKNYLHS-------------PSNPK---------SISSNYIRSLAMD-SQNR-LWIG 279 (795)
T ss_dssp TTE-EEEEEBSSCEEEEETTTTEEEEECCC-------------TTCTT---------SCSCSBEEEEEEC-TTSC-EEEE
T ss_pred CCC-EEEEECCCCeEEEeCCCCeEEEeecC-------------CCCcc---------ccCCCeEEEEEEc-CCCC-EEEE
Confidence 555 77777654578899888776544311 00000 0014568898854 6776 4555
Q ss_pred EcCCcEEEEeCCCC
Q 001287 269 YIDGDILLWNTSTT 282 (1107)
Q Consensus 269 ~~dG~I~lWd~~~~ 282 (1107)
+.+| |.+|+..+.
T Consensus 280 t~~G-l~~~~~~~~ 292 (795)
T 4a2l_A 280 TFND-LNIYHEGTD 292 (795)
T ss_dssp ESSC-EEEEETTTT
T ss_pred eCCh-hheEcCCCC
Confidence 5554 888887543
No 206
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.77 E-value=5.1e-08 Score=110.49 Aligned_cols=143 Identities=10% Similarity=0.097 Sum_probs=109.2
Q ss_pred CEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCe-----------eeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEe
Q 001287 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRS-----------LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKY 146 (1107)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~-----------~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~ 146 (1107)
++..|++++..+++++++.+ .+.||++...+ ......++. |++++| ++.+|+++ .+|.|++|++
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 79999999999999999986 56669975443 123345667 999999 89999999 8899999998
Q ss_pred ecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCcccccccc
Q 001287 147 DADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDG 226 (1107)
Q Consensus 147 d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~ 226 (1107)
...... ..++.+. ..+.++.+.+. + ++++..||.|.+||+.++.....
T Consensus 114 ~sl~~~-----~~~~~~~------------~~v~~i~~~~p---~-~av~~~dG~L~v~dl~~~~~~~~----------- 161 (388)
T 1xip_A 114 EELSEF-----RTVTSFE------------KPVFQLKNVNN---T-LVILNSVNDLSALDLRTKSTKQL----------- 161 (388)
T ss_dssp SSTTCE-----EEEEECS------------SCEEEEEECSS---E-EEEEETTSEEEEEETTTCCEEEE-----------
T ss_pred hhhhcc-----Cccceee------------cceeeEEecCC---C-EEEEECCCCEEEEEccCCccccc-----------
Confidence 753211 1133333 45777777542 2 89999999999999998766432
Q ss_pred ccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 227 VVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
...|+|+||. |+| ++.|..||++++|+....
T Consensus 162 ----------------------~~~Vs~v~WS-pkG--~~vg~~dg~i~~~~~~~~ 192 (388)
T 1xip_A 162 ----------------------AQNVTSFDVT-NSQ--LAVLLKDRSFQSFAWRNG 192 (388)
T ss_dssp ----------------------EESEEEEEEC-SSE--EEEEETTSCEEEEEEETT
T ss_pred ----------------------cCCceEEEEc-CCc--eEEEEcCCcEEEEcCCCc
Confidence 4469999996 999 788999999999988654
No 207
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.73 E-value=1.6e-06 Score=95.51 Aligned_cols=195 Identities=11% Similarity=0.127 Sum_probs=128.3
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCC-----CCCCEEEEEEEeCCCEEEEEeCC---------
Q 001287 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP-----SQLPYKNLEFLQNQGFLISITND--------- 97 (1107)
Q Consensus 32 ~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~-----h~~~V~~l~fs~d~~~L~S~s~d--------- 97 (1107)
+..+..+.+++++|++++++ +. ++.|.+|+.++.+...+.. ....+..++++++|.++++....
T Consensus 50 ~~~~~~~~~i~~~~dG~l~v-~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~ 127 (297)
T 3g4e_A 50 VTMDAPVSSVALRQSGGYVA-TI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLER 127 (297)
T ss_dssp EECSSCEEEEEEBTTSSEEE-EE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCT
T ss_pred EeCCCceEEEEECCCCCEEE-EE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccC
Confidence 44677899999999999554 45 5679999986554432221 12357889999998877765332
Q ss_pred CcEEEEEcCC-CeeeeeeccCCCeEEEEEecCCCEEEEEc-CCCcEEEEEeecCCCceeec--ceeecccccccccCCCC
Q 001287 98 NEIQVWSLES-RSLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQL--PYNISADALSEKAGFPL 173 (1107)
Q Consensus 98 ~~I~vWDl~s-~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~-~dg~V~vw~~d~~~~~l~~~--~~~i~~~~~~~~~~~~~ 173 (1107)
..-.||.+.. ++.............++|+|+++.|++.. .++.|++|+++..++.+... -+.+....
T Consensus 128 ~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~--------- 198 (297)
T 3g4e_A 128 HQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEE--------- 198 (297)
T ss_dssp TCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGG---------
T ss_pred CCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCC---------
Confidence 3356666653 33333333335568899999999887665 56878888887555655321 01222211
Q ss_pred CCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCcee
Q 001287 174 LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEIS 253 (1107)
Q Consensus 174 ~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt 253 (1107)
..+.++++.+ +|.+.++....+.|.+||..+++++..... + ...++
T Consensus 199 ---~~p~g~~~d~--~G~lwva~~~~~~v~~~d~~tG~~~~~i~~---------p--------------------~~~~t 244 (297)
T 3g4e_A 199 ---QIPDGMCIDA--EGKLWVACYNGGRVIRLDPVTGKRLQTVKL---------P--------------------VDKTT 244 (297)
T ss_dssp ---CEEEEEEEBT--TSCEEEEEETTTEEEEECTTTCCEEEEEEC---------S--------------------SSBEE
T ss_pred ---CCCCeeEECC--CCCEEEEEcCCCEEEEEcCCCceEEEEEEC---------C--------------------CCCce
Confidence 4578889966 687666666778899999997776544321 0 35789
Q ss_pred EEEeecCCCCEEEEEEcC
Q 001287 254 ALCWASSSGSILAVGYID 271 (1107)
Q Consensus 254 sl~w~spdg~~l~sg~~d 271 (1107)
+++|..|+++.|+..+..
T Consensus 245 ~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 245 SCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EEEEESGGGCEEEEEEBC
T ss_pred EEEEeCCCCCEEEEEcCC
Confidence 999865888887776643
No 208
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.70 E-value=4.1e-07 Score=105.29 Aligned_cols=216 Identities=14% Similarity=0.063 Sum_probs=135.3
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCC--cEEEEEcCCCeeeeee
Q 001287 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDN--EIQVWSLESRSLACCL 114 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~--~I~vWDl~s~~~~~~~ 114 (1107)
.+..|+|+|+++++++...++.|++|+.++..+........... ++|++++.+|+.+..++ .|.+||...+.....+
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~ 210 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRI 210 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEe
Confidence 57889999999988888888999999998655543332222223 99999999999998765 7999998776543333
Q ss_pred ----c-cCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCC
Q 001287 115 ----K-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1107)
Q Consensus 115 ----~-~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~ 189 (1107)
. ....+.+++++|+...|+++..++.|+.|+.+. +.... +..... .+ .....+...++|+|. +
T Consensus 211 g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~--~~~~~----~~~~~~---~g--~~~~~P~~~ia~~p~-~ 278 (409)
T 3hrp_A 211 GQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKT--QEVTL----IKQLEL---SG--SLGTNPGPYLIYYFV-D 278 (409)
T ss_dssp EECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTT--CCEEE----EEECCC---CS--CCCCSSCCEEEEETT-T
T ss_pred eeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCC--CCEEE----Eecccc---cC--CCCCCccccEEEeCC-C
Confidence 2 345678999999777888888888776666543 33221 100000 00 000011128999885 3
Q ss_pred CCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEE
Q 001287 190 GNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1107)
Q Consensus 190 ~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~ 269 (1107)
+.++++-..++.|..|+.... ...+.++. .. .+.++. ......-.....+++. ++|..+++-.
T Consensus 279 g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~-------------~~-~g~~dg-~~~~~~~~~P~gia~d-~dG~lyvad~ 341 (409)
T 3hrp_A 279 SNFYMSDQNLSSVYKITPDGE-CEWFCGSA-------------TQ-KTVQDG-LREEALFAQPNGMTVD-EDGNFYIVDG 341 (409)
T ss_dssp TEEEEEETTTTEEEEECTTCC-EEEEEECT-------------TC-CSCBCE-EGGGCBCSSEEEEEEC-TTCCEEEEET
T ss_pred CEEEEEeCCCCEEEEEecCCC-EEEEEeCC-------------CC-CCcCCC-cccccEeCCCeEEEEe-CCCCEEEEeC
Confidence 554455556789999998765 33333331 00 000000 0000012346788975 9999777777
Q ss_pred -cCCcEEEEeCCCC
Q 001287 270 -IDGDILLWNTSTT 282 (1107)
Q Consensus 270 -~dG~I~lWd~~~~ 282 (1107)
.++.|+.|+..++
T Consensus 342 ~~~~~I~~~~~~~G 355 (409)
T 3hrp_A 342 FKGYCLRKLDILDG 355 (409)
T ss_dssp TTTCEEEEEETTTT
T ss_pred CCCCEEEEEECCCC
Confidence 7889999997544
No 209
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.69 E-value=2.7e-05 Score=88.79 Aligned_cols=147 Identities=13% Similarity=0.130 Sum_probs=89.4
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeeeeeeccC----------CCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeec
Q 001287 87 NQGFLISITNDNEIQVWSLESRSLACCLKWE----------SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQL 156 (1107)
Q Consensus 87 d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~----------~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~ 156 (1107)
++..|+.++.++.|..+|..+++.+...... ..+.+ .....+..+++++.+|.|+.+ +..+|++.-
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~--d~~tG~~~W- 127 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYAL--NTSDGTVAW- 127 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEE--ETTTCCEEE-
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEE--ECCCCCEEE-
Confidence 3578888888999999999999988666442 22322 222346788899999966554 555566652
Q ss_pred ceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCC
Q 001287 157 PYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDS 236 (1107)
Q Consensus 157 ~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 236 (1107)
+..... .+ ...|...+..+++++.++.|..+|..+++.++..........
T Consensus 128 --~~~~~~-------------~~---~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~------------ 177 (376)
T 3q7m_A 128 --QTKVAG-------------EA---LSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLS------------ 177 (376)
T ss_dssp --EEECSS-------------CC---CSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC----------------
T ss_pred --EEeCCC-------------ce---EcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCcee------------
Confidence 232111 00 001111234588999999999999999988876533110000
Q ss_pred ccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 237 TFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 237 ~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
.....+.+. .+..++.+..+|.|..+|..++
T Consensus 178 ------------~~~~~~~~~---~~~~v~~g~~~g~l~~~d~~tG 208 (376)
T 3q7m_A 178 ------------LRGESAPTT---AFGAAVVGGDNGRVSAVLMEQG 208 (376)
T ss_dssp -------------CCCCCCEE---ETTEEEECCTTTEEEEEETTTC
T ss_pred ------------ecCCCCcEE---ECCEEEEEcCCCEEEEEECCCC
Confidence 000111221 1456788888899999998765
No 210
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.68 E-value=0.0021 Score=80.97 Aligned_cols=203 Identities=10% Similarity=0.100 Sum_probs=124.1
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeee--CCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeec
Q 001287 38 ASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLI--SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK 115 (1107)
Q Consensus 38 i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~--~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~ 115 (1107)
|.++..++++.+.+ |+.++.|..|+......... ..+...|.++...+++...+ ++.++-|.+||..+++......
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~ 252 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLH 252 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECC
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeec
Confidence 88899998887665 77765688898755443322 22456799998888765444 4445459999998876543321
Q ss_pred --------cCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccC
Q 001287 116 --------WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1107)
Q Consensus 116 --------~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~ 187 (1107)
....|.++..++++.+ .+|+.+| |.+++ ...+.+.. +...... ........|.++...+
T Consensus 253 ~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~G-l~~~~--~~~~~~~~--~~~~~~~------~~~l~~~~i~~i~~D~- 319 (795)
T 4a2l_A 253 SPSNPKSISSNYIRSLAMDSQNRL-WIGTFND-LNIYH--EGTDSFAS--YSSNPVE------NGSLSQRSVRSIFMDS- 319 (795)
T ss_dssp CTTCTTSCSCSBEEEEEECTTSCE-EEEESSC-EEEEE--TTTTEEEE--ECCCTTS------TTSCSSSCEEEEEECT-
T ss_pred CCCCccccCCCeEEEEEEcCCCCE-EEEeCCh-hheEc--CCCCeEEE--EecCCCC------CCCCCCCcEEEEEEeC-
Confidence 1246999998877764 4555555 55554 43344442 1111000 0011125699998854
Q ss_pred CCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEE
Q 001287 188 SSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1107)
Q Consensus 188 ~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~s 267 (1107)
+|. |-+|+.++-|..|+..+.....+... .. .. ......|.+++.. ++|. |..
T Consensus 320 -~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~-------------~~-~~---------~l~~~~V~~i~~d-~~g~-lWi 372 (795)
T 4a2l_A 320 -QGG-MWLGTYFGGLNYYHPIRNRFKNIRNI-------------PY-KN---------SLSDNVVSCIVED-KDKN-LWI 372 (795)
T ss_dssp -TSC-EEEEESSSCEEEECGGGGSSEEECCC-------------TT-SS---------SCSCSSEEEEEEC-TTSC-EEE
T ss_pred -CcC-EEEEECCCCeEEeCCCcccceEEcCC-------------CC-CC---------CCCCCeeEEEEEC-CCCC-EEE
Confidence 677 88888888888998877654333211 00 00 0014568999854 6665 666
Q ss_pred EEcCCcEEEEeCCCC
Q 001287 268 GYIDGDILLWNTSTT 282 (1107)
Q Consensus 268 g~~dG~I~lWd~~~~ 282 (1107)
|+.+|-|..|+..+.
T Consensus 373 Gt~~~Gl~~~~~~~~ 387 (795)
T 4a2l_A 373 GTNDGGLNLYNPITQ 387 (795)
T ss_dssp EESSSCEEEECTTTC
T ss_pred EECCCCeEEEcCCCC
Confidence 888877999987644
No 211
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.68 E-value=5.5e-07 Score=101.00 Aligned_cols=197 Identities=11% Similarity=0.009 Sum_probs=129.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceee-eCCCC-----CCEEEEEEEeCCCEEEEEe--CCCcEEEEEc
Q 001287 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLL-ISPSQ-----LPYKNLEFLQNQGFLISIT--NDNEIQVWSL 105 (1107)
Q Consensus 34 ~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~-~~~h~-----~~V~~l~fs~d~~~L~S~s--~d~~I~vWDl 105 (1107)
....+..++++|++++.++...++.|.+||....++.. ..... .....|++ . +++|+.++ .++.|.+||+
T Consensus 82 ~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~ 159 (328)
T 3dsm_A 82 GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDT 159 (328)
T ss_dssp CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEET
T ss_pred CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEEC
Confidence 34678899999998554444488999999997665542 22111 13456777 3 45555555 4889999999
Q ss_pred CCCeeeeeeccCCCeEEEEEecCCCEEEEEcCC----------CcEEEEEeecCCCceeecceeecccccccccCCCCCC
Q 001287 106 ESRSLACCLKWESNITAFSVISGSHFMYIGDEN----------GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLS 175 (1107)
Q Consensus 106 ~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~d----------g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~ 175 (1107)
.+++.+..+........++++++++++++...+ +.|++++ ..++++... +.++..
T Consensus 160 ~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id--~~t~~v~~~-~~~~~g------------ 224 (328)
T 3dsm_A 160 ETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRID--AETFTVEKQ-FKFKLG------------ 224 (328)
T ss_dssp TTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEE--TTTTEEEEE-EECCTT------------
T ss_pred CCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEE--CCCCeEEEE-EecCCC------------
Confidence 999988887666667889999999866665544 5565555 444565532 222210
Q ss_pred CCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEE
Q 001287 176 HQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 255 (1107)
Q Consensus 176 ~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl 255 (1107)
..+..++++| ++.+|+++.. .|.+||..++++.... . +. . ......++
T Consensus 225 -~~p~~la~~~--d~~~lyv~~~--~v~~~d~~t~~~~~~~-~--------~~---~---------------~~~~p~gi 272 (328)
T 3dsm_A 225 -DWPSEVQLNG--TRDTLYWINN--DIWRMPVEADRVPVRP-F--------LE---F---------------RDTKYYGL 272 (328)
T ss_dssp -CCCEEEEECT--TSCEEEEESS--SEEEEETTCSSCCSSC-S--------BC---C---------------CSSCEEEE
T ss_pred -CCceeEEEec--CCCEEEEEcc--EEEEEECCCCceeeee-e--------ec---C---------------CCCceEEE
Confidence 3589999988 6776777655 8889999887642100 0 00 0 02346678
Q ss_pred EeecC-CCCEEEEE----EcCCcEEEEeCC
Q 001287 256 CWASS-SGSILAVG----YIDGDILLWNTS 280 (1107)
Q Consensus 256 ~w~sp-dg~~l~sg----~~dG~I~lWd~~ 280 (1107)
++. | ++...++. ..+|.|.+||..
T Consensus 273 ~vd-p~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 273 TVN-PNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEC-TTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEc-CCCCeEEEEcccccccCCEEEEECCC
Confidence 864 7 55555555 578999999987
No 212
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.68 E-value=3.9e-06 Score=95.62 Aligned_cols=204 Identities=11% Similarity=-0.032 Sum_probs=124.1
Q ss_pred EEEEcCCCCEEEEEE----------CCCcEEEEeCCCcceeee--CC---C---CCCEEEEEEEeCCCEEEEEeC--CCc
Q 001287 40 ILAFDHIQRLLAIAT----------LDGRIKVIGGDGIEGLLI--SP---S---QLPYKNLEFLQNQGFLISITN--DNE 99 (1107)
Q Consensus 40 ~lafsp~~~~LA~Gs----------~dg~I~iw~~~~~~~~~~--~~---h---~~~V~~l~fs~d~~~L~S~s~--d~~ 99 (1107)
.++|+||+++|.++. .++.|.+||....+.+-. .+ + ...-..+.|+|||++|+.++. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 899999999999986 367899999976544321 11 0 122358999999999998874 578
Q ss_pred EEEEEcCCCeeeee-eccCCCeEEEEEecCC-CEEEEEcCCCcEEEEEeecCCCceeec----------------c----
Q 001287 100 IQVWSLESRSLACC-LKWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQL----------------P---- 157 (1107)
Q Consensus 100 I~vWDl~s~~~~~~-~~~~~~Vt~l~~~~~~-~~l~~g~~dg~V~vw~~d~~~~~l~~~----------------~---- 157 (1107)
|.++| .+++++.. +...+. +.+.+.+ +.+++.+.||.+.+++. . ++.... +
T Consensus 150 v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~--g~~~~~~~~~~~~~~~~p~~~~~~~~~ 222 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-A--GGAAGAGLVGAMLTAAQNLLTQPAQAN 222 (373)
T ss_pred EEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-C--CcEEEEEeccccccCCcceeecceeEe
Confidence 99999 99998877 654432 2333333 23333445555544444 1 111100 0
Q ss_pred --------------eeecc--cc--cccccCC-------CCCCCCCeEEEEcccCCCCCEEEEEEC----------CCeE
Q 001287 158 --------------YNISA--DA--LSEKAGF-------PLLSHQPVVGVLPHPNSSGNRVLIAYE----------NALV 202 (1107)
Q Consensus 158 --------------~~i~~--~~--~~~~~~~-------~~~~~~~V~~v~f~P~~~~~~ll~~~~----------dg~V 202 (1107)
+.+.. .. ....+.. ....+.....+.++| ++++++++.. ++.|
T Consensus 223 ~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~--d~~~lyV~~~~~~~~~~~~~~~~V 300 (373)
T 2mad_H 223 KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK--SSDGIYLLTSEQSAWKLHAAAKEV 300 (373)
T ss_pred cCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECC--CCCEEEEEeccCCcccccCCCCeE
Confidence 00000 00 0000000 000112234467777 6677777654 3579
Q ss_pred EEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCC-EEEEEE-cCCcEEEEeCC
Q 001287 203 ILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGY-IDGDILLWNTS 280 (1107)
Q Consensus 203 ~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~-~l~sg~-~dG~I~lWd~~ 280 (1107)
.++|..+.+++..... .....++.| +|||+ .++++. .+++|.+||..
T Consensus 301 ~VID~~t~~vv~~i~~------------------------------g~~p~~i~~-s~Dg~~~l~v~~~~~~~V~ViD~~ 349 (373)
T 2mad_H 301 TSVTGLVGQTSSQISL------------------------------GHDVDAISV-AQDGGPDLYALSAGTEVLHIYDAG 349 (373)
T ss_pred EEEECCCCEEEEEEEC------------------------------CCCcCeEEE-CCCCCeEEEEEcCCCCeEEEEECC
Confidence 9999999988654422 234667887 49999 777776 58999999998
Q ss_pred CCC
Q 001287 281 TTA 283 (1107)
Q Consensus 281 ~~~ 283 (1107)
+.+
T Consensus 350 t~~ 352 (373)
T 2mad_H 350 AGD 352 (373)
T ss_pred CCC
Confidence 774
No 213
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.65 E-value=2.3e-06 Score=93.22 Aligned_cols=166 Identities=11% Similarity=0.120 Sum_probs=118.5
Q ss_pred eeeecCCC--CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCC-CCCCEEEEEEEeCCCEEEEEeC-CCcEEEE
Q 001287 28 IAVHYGIP--ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITN-DNEIQVW 103 (1107)
Q Consensus 28 ~~~~~G~~--~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~-h~~~V~~l~fs~d~~~L~S~s~-d~~I~vW 103 (1107)
....+... ..+.+++++|+|++|+ +.++.|+.|+.++..+-.... +...+..+.+.+||..|++.+. ++.|..+
T Consensus 27 ~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~v 104 (276)
T 3no2_A 27 IVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITRDGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEV 104 (276)
T ss_dssp EEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECTTSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEE
T ss_pred EEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECCCCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEE
Confidence 34444443 3688999999999998 457889999996554433333 3457889999999999999887 7778888
Q ss_pred EcCCCeeeeeeccC-------CCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCC
Q 001287 104 SLESRSLACCLKWE-------SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSH 176 (1107)
Q Consensus 104 Dl~s~~~~~~~~~~-------~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~ 176 (1107)
|. +++.+..+... .....+++.++++++++...++.|.+|+. . |++.. ++...
T Consensus 105 d~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~--~-G~~~w---~~~~~------------- 164 (276)
T 3no2_A 105 NM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAP--N-GQLLN---SVKLS------------- 164 (276)
T ss_dssp CT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECT--T-SCEEE---EEECS-------------
T ss_pred eC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECC--C-CCEEE---EEECC-------------
Confidence 86 56665554321 23445678899999999999997766664 3 66663 23321
Q ss_pred CCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeC
Q 001287 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGG 217 (1107)
Q Consensus 177 ~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g 217 (1107)
..+.++...| +++.++++..++.|..||..+++.++.+.
T Consensus 165 ~~~~~~~~~~--~g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 165 GTPFSSAFLD--NGDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp SCCCEEEECT--TSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred CCccceeEcC--CCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 2345566655 68767777777889999999999887764
No 214
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.65 E-value=3.4e-06 Score=97.52 Aligned_cols=165 Identities=10% Similarity=0.004 Sum_probs=102.7
Q ss_pred CEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecc
Q 001287 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLP 157 (1107)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~ 157 (1107)
....|+|++++..+++-..++.|++||..++.+........... +++++++++|++++.++...||.++...+......
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~ 210 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRI 210 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEe
Confidence 57899999998766666667899999999988776654444444 99999999999998876434555554333221110
Q ss_pred eeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCc
Q 001287 158 YNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDST 237 (1107)
Q Consensus 158 ~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 237 (1107)
-.+..+ ....+.+++++|. ++ .|+++..++.|..||..++....+.+.. . .+ .
T Consensus 211 g~~~~~-----------~~~~p~~iav~p~-~g-~lyv~d~~~~I~~~d~~~~~~~~~~~~~---~--------~g---~ 263 (409)
T 3hrp_A 211 GQLGST-----------FSGKIGAVALDET-EE-WLYFVDSNKNFGRFNVKTQEVTLIKQLE---L--------SG---S 263 (409)
T ss_dssp EECCTT-----------SCSCCCBCEECTT-SS-EEEEECTTCEEEEEETTTCCEEEEEECC---C--------CS---C
T ss_pred eeccch-----------hcCCcEEEEEeCC-CC-eEEEEECCCcEEEEECCCCCEEEEeccc---c--------cC---C
Confidence 001110 1155788899874 34 4777888899999999887654332110 0 00 0
Q ss_pred cccCCCCCCCCCCceeEEEeecCC-CCEEEEEEcCCcEEEEeCC
Q 001287 238 FLEGISEHQPEEKEISALCWASSS-GSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 238 ~~~~~~~~~~~~~~Vtsl~w~spd-g~~l~sg~~dG~I~lWd~~ 280 (1107)
.+ ..+...++|. |+ +..+++-..++.|+.|+..
T Consensus 264 ~~---------~~P~~~ia~~-p~~g~lyv~d~~~~~I~~~~~~ 297 (409)
T 3hrp_A 264 LG---------TNPGPYLIYY-FVDSNFYMSDQNLSSVYKITPD 297 (409)
T ss_dssp CC---------CSSCCEEEEE-TTTTEEEEEETTTTEEEEECTT
T ss_pred CC---------CCccccEEEe-CCCCEEEEEeCCCCEEEEEecC
Confidence 00 1112378876 74 5555555567778888764
No 215
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.61 E-value=4.5e-06 Score=92.31 Aligned_cols=202 Identities=9% Similarity=-0.005 Sum_probs=130.3
Q ss_pred CCCCeEEEEEcCC-CCEEEEEECCCcEEEEeCCCcceeee-CC-----CCCCEEEEEEEeCCCEEEEEeCC---------
Q 001287 34 IPATASILAFDHI-QRLLAIATLDGRIKVIGGDGIEGLLI-SP-----SQLPYKNLEFLQNQGFLISITND--------- 97 (1107)
Q Consensus 34 ~~~~i~~lafsp~-~~~LA~Gs~dg~I~iw~~~~~~~~~~-~~-----h~~~V~~l~fs~d~~~L~S~s~d--------- 97 (1107)
+...+..++++++ +++++ ++.++.|.+|+.+ .+.... .. +...+..+++.+++..+++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v-~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFV-ADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp EECCEEEEEECSSSSEEEE-EETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred CCCCCceEEEecCCCcEEE-EECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence 4467899999999 66554 4445579999987 443322 21 12358899999998777776654
Q ss_pred ------CcEEEEEcCCCeeeeeeccCCCeEEEEEe----cCCCEEEEEc-CCCcEEEEEeecCCCceeec--ceeecccc
Q 001287 98 ------NEIQVWSLESRSLACCLKWESNITAFSVI----SGSHFMYIGD-ENGLMSVIKYDADEGKLFQL--PYNISADA 164 (1107)
Q Consensus 98 ------~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~----~~~~~l~~g~-~dg~V~vw~~d~~~~~l~~~--~~~i~~~~ 164 (1107)
+.|..||.. ++.............++++ +++++++++. .++.|++|+++. .+++... -..++.+.
T Consensus 147 ~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~-~g~~~~~~~~~~~~~~~ 224 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG-PAKIENKKVWGHIPGTH 224 (314)
T ss_dssp TTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE-TTEEEEEEEEEECCCCS
T ss_pred cccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCC-CCccccceEEEECCCCC
Confidence 467777766 5544433334557889999 9998777664 578888888762 2333210 01122110
Q ss_pred cccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCC
Q 001287 165 LSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISE 244 (1107)
Q Consensus 165 ~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (1107)
...+..+++.| +|..+++...++.|.+||..+++....... +
T Consensus 225 -----------~~~p~~i~~d~--~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~---------~---------------- 266 (314)
T 1pjx_A 225 -----------EGGADGMDFDE--DNNLLVANWGSSHIEVFGPDGGQPKMRIRC---------P---------------- 266 (314)
T ss_dssp -----------SCEEEEEEEBT--TCCEEEEEETTTEEEEECTTCBSCSEEEEC---------S----------------
T ss_pred -----------CCCCCceEECC--CCCEEEEEcCCCEEEEEcCCCCcEeEEEeC---------C----------------
Confidence 03477889976 687666666889999999885544322211 0
Q ss_pred CCCCCCceeEEEeecCCCCEEEEEE-cCCcEEEEeCCCC
Q 001287 245 HQPEEKEISALCWASSSGSILAVGY-IDGDILLWNTSTT 282 (1107)
Q Consensus 245 ~~~~~~~Vtsl~w~spdg~~l~sg~-~dG~I~lWd~~~~ 282 (1107)
...+.++++ +++|+.|+++. .++.|..|++...
T Consensus 267 ----~~~~~~i~~-~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 267 ----FEKPSNLHF-KPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp ----SSCEEEEEE-CTTSSEEEEEETTTTEEEEEECSSC
T ss_pred ----CCCceeEEE-CCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 356888997 59999665554 5688999998643
No 216
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.61 E-value=6.8e-06 Score=94.38 Aligned_cols=118 Identities=7% Similarity=-0.146 Sum_probs=80.1
Q ss_pred eCCCEEEEEeCC-----CcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcC----------CCcEEEEEeecCC
Q 001287 86 QNQGFLISITND-----NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDE----------NGLMSVIKYDADE 150 (1107)
Q Consensus 86 ~d~~~L~S~s~d-----~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~----------dg~V~vw~~d~~~ 150 (1107)
+++.+++..... +.|.+.|..+++.+..+.....- .++++|++++++++.. ++.|.++ |..+
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~Vsvi--D~~t 158 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVF--DPVT 158 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE--CTTT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEE--ECCC
Confidence 466666666553 68999999999999888655444 8999999999999873 5566555 4544
Q ss_pred CceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEEC--CCeEEEEEccCCEEEEEe
Q 001287 151 GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE--NALVILWDVSEAQIIFVG 216 (1107)
Q Consensus 151 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~--dg~V~vwdl~~~~~~~~~ 216 (1107)
++.... ..+++... +. .......+.++| +|++++++.. ++.|.+.|+.+.+++...
T Consensus 159 ~~vv~~-I~v~g~~r---~~----~g~~P~~~~~sp--DGk~lyV~n~~~~~~VsVID~~t~kvv~~I 216 (426)
T 3c75_H 159 FLPIAD-IELPDAPR---FL----VGTYQWMNALTP--DNKNLLFYQFSPAPAVGVVDLEGKTFDRML 216 (426)
T ss_dssp CCEEEE-EEETTCCC---CC----BSCCGGGSEECT--TSSEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred CcEEEE-EECCCccc---cc----cCCCcceEEEcC--CCCEEEEEecCCCCeEEEEECCCCeEEEEE
Confidence 555542 22221000 00 002355678877 7888888764 578999999999886543
No 217
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.59 E-value=6.2e-06 Score=90.85 Aligned_cols=198 Identities=11% Similarity=0.070 Sum_probs=129.8
Q ss_pred eEEEEEcCC-CCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeecc
Q 001287 38 ASILAFDHI-QRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW 116 (1107)
Q Consensus 38 i~~lafsp~-~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~ 116 (1107)
....+|+|+ +.++.+...++.|+.|+..+..... ......+.+++|++++.++++. ++.|.+||..+++.......
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~ 91 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-VTMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATV 91 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-EECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEEC
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-EeCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEec
Confidence 457899995 5677777778999999987655432 2345689999999998855543 67899999998876443322
Q ss_pred -----CCCeEEEEEecCCCEEEEEcC---------CCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEE
Q 001287 117 -----ESNITAFSVISGSHFMYIGDE---------NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1107)
Q Consensus 117 -----~~~Vt~l~~~~~~~~l~~g~~---------dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v 182 (1107)
...+..+++++++++.++... ...-.||.++.. +++.. +.... .....+
T Consensus 92 ~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~----~~~~~------------~~pngi 154 (297)
T 3g4e_A 92 DNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK----YFDQV------------DISNGL 154 (297)
T ss_dssp CTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE----EEEEE------------SBEEEE
T ss_pred CCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE----Eeecc------------ccccce
Confidence 235788999999985554422 233467888764 34332 11111 347899
Q ss_pred EcccCCCCCEEEE-EECCCeEEEEEc--cCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeec
Q 001287 183 LPHPNSSGNRVLI-AYENALVILWDV--SEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS 259 (1107)
Q Consensus 183 ~f~P~~~~~~ll~-~~~dg~V~vwdl--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~s 259 (1107)
+|+| +++.|++ .+.++.|.+||+ .++.+........ +. ........+++.
T Consensus 155 ~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~--~~----------------------~~~~~p~g~~~d- 207 (297)
T 3g4e_A 155 DWSL--DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYK--LE----------------------KEEQIPDGMCID- 207 (297)
T ss_dssp EECT--TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEE--CC----------------------GGGCEEEEEEEB-
T ss_pred EEcC--CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEE--CC----------------------CCCCCCCeeEEC-
Confidence 9988 6765654 455788999997 4444321100000 00 002346678865
Q ss_pred CCCCEEEEEEcCCcEEEEeCCCC
Q 001287 260 SSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 260 pdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
++|...++...++.|..||..++
T Consensus 208 ~~G~lwva~~~~~~v~~~d~~tG 230 (297)
T 3g4e_A 208 AEGKLWVACYNGGRVIRLDPVTG 230 (297)
T ss_dssp TTSCEEEEEETTTEEEEECTTTC
T ss_pred CCCCEEEEEcCCCEEEEEcCCCc
Confidence 89988787778889999998765
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.54 E-value=1.4e-05 Score=89.44 Aligned_cols=194 Identities=12% Similarity=0.020 Sum_probs=118.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCC-----CCCEEEEEEEeCCCEEEEEeCC----CcEEEE
Q 001287 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPS-----QLPYKNLEFLQNQGFLISITND----NEIQVW 103 (1107)
Q Consensus 33 G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h-----~~~V~~l~fs~d~~~L~S~s~d----~~I~vW 103 (1107)
..+..+.+++++|++++++. +.+ .|.+|+..+.+....... ...+..+.++++|.++++...+ +...||
T Consensus 87 ~~~~~v~~i~~~~dg~l~v~-~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~ 164 (326)
T 2ghs_A 87 ALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIY 164 (326)
T ss_dssp ECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEE
T ss_pred ECCCcceEEEEeCCCeEEEE-ECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEE
Confidence 34678999999999987765 444 499999865544322221 2358899999998877665432 233444
Q ss_pred EcCCCeeeeeeccCCCeEEEEEecCCCEEEEEc-CCCcEEEEEeecCCC-ceeec-ce-eecccccccccCCCCCCCCCe
Q 001287 104 SLESRSLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEG-KLFQL-PY-NISADALSEKAGFPLLSHQPV 179 (1107)
Q Consensus 104 Dl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~-~dg~V~vw~~d~~~~-~l~~~-~~-~i~~~~~~~~~~~~~~~~~~V 179 (1107)
.+.+++.............++|+++++++++++ .++.|++|+++..++ .+... .+ .+.... ..+
T Consensus 165 ~~~~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~------------~~p 232 (326)
T 2ghs_A 165 HVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIK------------GGM 232 (326)
T ss_dssp EEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSS------------SEE
T ss_pred EEeCCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCC------------CCC
Confidence 443555443333334577899999999887665 467777777652234 32210 01 111111 346
Q ss_pred EEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeec
Q 001287 180 VGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS 259 (1107)
Q Consensus 180 ~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~s 259 (1107)
.++++.+ +|.+.++...++.|.+||........+..+ ...+++++|..
T Consensus 233 ~gi~~d~--~G~lwva~~~~~~v~~~d~~g~~~~~i~~~------------------------------~~~~~~~af~g 280 (326)
T 2ghs_A 233 DGSVCDA--EGHIWNARWGEGAVDRYDTDGNHIARYEVP------------------------------GKQTTCPAFIG 280 (326)
T ss_dssp EEEEECT--TSCEEEEEETTTEEEEECTTCCEEEEEECS------------------------------CSBEEEEEEES
T ss_pred CeeEECC--CCCEEEEEeCCCEEEEECCCCCEEEEEECC------------------------------CCCcEEEEEec
Confidence 7888855 687555556678899999854333222211 34688999754
Q ss_pred CCCCEEEEEEcCC
Q 001287 260 SSGSILAVGYIDG 272 (1107)
Q Consensus 260 pdg~~l~sg~~dG 272 (1107)
+++..|++++..+
T Consensus 281 ~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 281 PDASRLLVTSARE 293 (326)
T ss_dssp TTSCEEEEEEBCT
T ss_pred CCCCEEEEEecCC
Confidence 7888776665443
No 219
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.51 E-value=2.5e-05 Score=87.26 Aligned_cols=190 Identities=11% Similarity=0.059 Sum_probs=125.3
Q ss_pred eEEEEEcCC-CCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeecc
Q 001287 38 ASILAFDHI-QRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW 116 (1107)
Q Consensus 38 i~~lafsp~-~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~ 116 (1107)
....+|+|+ +.++.++..++.|.+|+..+.+.... .....+.++.|++++.++++. ++.|.+||..+++.......
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~~~~v~~i~~~~dg~l~v~~--~~gl~~~d~~~g~~~~~~~~ 127 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVH-ALPFMGSALAKISDSKQLIAS--DDGLFLRDTATGVLTLHAEL 127 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE-ECSSCEEEEEEEETTEEEEEE--TTEEEEEETTTCCEEEEECS
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE-ECCCcceEEEEeCCCeEEEEE--CCCEEEEECCCCcEEEEeeC
Confidence 467899997 55667777789999999876554322 235689999999998777654 34599999988876443322
Q ss_pred -----CCCeEEEEEecCCCEEEEEcCC----CcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccC
Q 001287 117 -----ESNITAFSVISGSHFMYIGDEN----GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1107)
Q Consensus 117 -----~~~Vt~l~~~~~~~~l~~g~~d----g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~ 187 (1107)
...+..+++++++++.++...+ +...||.++ ++++... .... ....+++|+|
T Consensus 128 ~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~----~~~~------------~~~~~i~~s~- 188 (326)
T 2ghs_A 128 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKL----FADI------------SIPNSICFSP- 188 (326)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEE----EEEE------------SSEEEEEECT-
T ss_pred CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEe----eCCC------------cccCCeEEcC-
Confidence 1358899999999865544321 334667777 3554431 1111 3467899987
Q ss_pred CCCCEEEEE-ECCCeEEEEEcc--CC-EE-----EEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEee
Q 001287 188 SSGNRVLIA-YENALVILWDVS--EA-QI-----IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA 258 (1107)
Q Consensus 188 ~~~~~ll~~-~~dg~V~vwdl~--~~-~~-----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~ 258 (1107)
+++.++++ ..++.|.+||+. ++ .+ ..... .......++++.
T Consensus 189 -dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~-----------------------------~~~~~p~gi~~d 238 (326)
T 2ghs_A 189 -DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST-----------------------------GIKGGMDGSVCD 238 (326)
T ss_dssp -TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT-----------------------------TSSSEEEEEEEC
T ss_pred -CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECC-----------------------------CCCCCCCeeEEC
Confidence 67666555 456889999986 44 21 11110 002345677865
Q ss_pred cCCCCEEEEEEcCCcEEEEeCC
Q 001287 259 SSSGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 259 spdg~~l~sg~~dG~I~lWd~~ 280 (1107)
++|...++...++.|.+|+..
T Consensus 239 -~~G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 239 -AEGHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp -TTSCEEEEEETTTEEEEECTT
T ss_pred -CCCCEEEEEeCCCEEEEECCC
Confidence 889877777777889999873
No 220
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.50 E-value=5e-05 Score=93.67 Aligned_cols=112 Identities=11% Similarity=0.122 Sum_probs=69.3
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeccCCC----------e--EEEEEecCCCEEEEEcCCCcEEEEEeecCCCceee
Q 001287 88 QGFLISITNDNEIQVWSLESRSLACCLKWESN----------I--TAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQ 155 (1107)
Q Consensus 88 ~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~----------V--t~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~ 155 (1107)
++.|+.++.++.|.-+|..+++.+..+..... + ..+++ .+..+++++.++.|+. +|..+|++.-
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~a--lD~~tG~~~W 152 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIA--LDAATGKEVW 152 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEE--EETTTCCEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEE--EECCCCCEEe
Confidence 46788888889999999999999877744321 1 12222 4678999999997655 5555577663
Q ss_pred cceeeccc-ccccccCCCCCCCCCeEEEEcccCCCCCEEEEEEC------CCeEEEEEccCCEEEEEeC
Q 001287 156 LPYNISAD-ALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE------NALVILWDVSEAQIIFVGG 217 (1107)
Q Consensus 156 ~~~~i~~~-~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~------dg~V~vwdl~~~~~~~~~g 217 (1107)
++... .... ...+...|.-.+.+++++.. +|.|..||..+++.++.+.
T Consensus 153 ---~~~~~~~~~~-----------~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 153 ---HQNTFEGQKG-----------SLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF 207 (677)
T ss_dssp ---EEETTTTCCS-----------SCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred ---eecCCcCcCc-----------CcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEec
Confidence 33322 1000 00011111112334666654 6999999999999887653
No 221
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.50 E-value=9e-05 Score=84.40 Aligned_cols=171 Identities=12% Similarity=0.137 Sum_probs=102.2
Q ss_pred ccceeeeecCCCCCe------EEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCC----------CCCEEEEEEEeC
Q 001287 24 LNLRIAVHYGIPATA------SILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPS----------QLPYKNLEFLQN 87 (1107)
Q Consensus 24 ~~~~~~~~~G~~~~i------~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h----------~~~V~~l~fs~d 87 (1107)
.+++....+..+..+ ...++ ++..|.+++.+|.|+.||....+.+-.... ...+... ...+
T Consensus 26 ~~~~~~W~~~~~~~~~~~~~~~~p~v--~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~ 102 (376)
T 3q7m_A 26 FTPTTAWSTSVGSGIGNFYSNLHPAL--ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVS 102 (376)
T ss_dssp SCCEEEEEECCTTTTTTSCCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEE
T ss_pred CcceEEeEEecCCCccccceeeccEE--ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEe
Confidence 456666776554321 11222 367888888899999999865554422211 2233322 2234
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeeccccccc
Q 001287 88 QGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1107)
Q Consensus 88 ~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~ 167 (1107)
+..|+.++.++.|..+|..+++.+........+.+.-.. .+..+++++.+|.|+. ++..+|+... ......
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~-~~~~v~v~~~~g~l~~--~d~~tG~~~W---~~~~~~--- 173 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV-SDGLVLIHTSNGQLQA--LNEADGAVKW---TVNLDM--- 173 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE-ETTEEEEECTTSEEEE--EETTTCCEEE---EEECCC---
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE-ECCEEEEEcCCCeEEE--EECCCCcEEE---EEeCCC---
Confidence 578888899999999999999988776544333221111 2458888999996655 5555566653 222111
Q ss_pred ccCCCCCCCCCeEEE--EcccCCCCCEEEEEECCCeEEEEEccCCEEEEEe
Q 001287 168 KAGFPLLSHQPVVGV--LPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG 216 (1107)
Q Consensus 168 ~~~~~~~~~~~V~~v--~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~ 216 (1107)
.+..+ ...|...+..+++++.+|.|..+|..+++..+..
T Consensus 174 ----------~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~ 214 (376)
T 3q7m_A 174 ----------PSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQ 214 (376)
T ss_dssp ---------------CCCCCCEEETTEEEECCTTTEEEEEETTTCCEEEEE
T ss_pred ----------CceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 00000 0011112345888899999999999999887765
No 222
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.45 E-value=6.1e-06 Score=91.28 Aligned_cols=191 Identities=12% Similarity=0.052 Sum_probs=122.6
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCC----CCCEEEEEEEeCCCEEEE----EeC----------
Q 001287 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPS----QLPYKNLEFLQNQGFLIS----ITN---------- 96 (1107)
Q Consensus 35 ~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h----~~~V~~l~fs~d~~~L~S----~s~---------- 96 (1107)
...+..++++++|+++++...++.|.+|+.++....+.... ...+..+.+.++|...++ +..
T Consensus 85 ~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~ 164 (305)
T 3dr2_A 85 TAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADP 164 (305)
T ss_dssp CSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCC
T ss_pred CCccceeeECCCCCEEEEECCCCEEEEECCCCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccccccccccc
Confidence 45678999999999776655568899999874432222111 124678999999887776 221
Q ss_pred ---CCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCC------CcEEEEEeecCCCceeecceeeccccccc
Q 001287 97 ---DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDEN------GLMSVIKYDADEGKLFQLPYNISADALSE 167 (1107)
Q Consensus 97 ---d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~d------g~V~vw~~d~~~~~l~~~~~~i~~~~~~~ 167 (1107)
.+.|..||..+++..... .......++|+|+++.|+++... +.|++|+++.. .+... ..+...
T Consensus 165 ~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~--~l~~~-~~~~~~---- 236 (305)
T 3dr2_A 165 ELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG--ALHDR-RHFASV---- 236 (305)
T ss_dssp SSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETT--EEEEE-EEEECC----
T ss_pred ccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC--CccCC-eEEEEC----
Confidence 245778887777654443 33567889999999999988775 66777776642 22211 011100
Q ss_pred ccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCC
Q 001287 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQP 247 (1107)
Q Consensus 168 ~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1107)
....+.++++.+ +|+ |.++..+| |.+||........+..
T Consensus 237 -------~~~~pdgi~~d~--~G~-lwv~~~~g-v~~~~~~g~~~~~~~~------------------------------ 275 (305)
T 3dr2_A 237 -------PDGLPDGFCVDR--GGW-LWSSSGTG-VCVFDSDGQLLGHIPT------------------------------ 275 (305)
T ss_dssp -------SSSCCCSEEECT--TSC-EEECCSSE-EEEECTTSCEEEEEEC------------------------------
T ss_pred -------CCCCCCeEEECC--CCC-EEEecCCc-EEEECCCCCEEEEEEC------------------------------
Confidence 013355677755 687 66666554 8899986554433321
Q ss_pred CCCceeEEEeecCCCCEEEEEEcCCcEEE
Q 001287 248 EEKEISALCWASSSGSILAVGYIDGDILL 276 (1107)
Q Consensus 248 ~~~~Vtsl~w~spdg~~l~sg~~dG~I~l 276 (1107)
...+++++|. ++++.|+.++.++..++
T Consensus 276 -~~~~~~~~f~-~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 276 -PGTASNCTFD-QAQQRLFITGGPCLWML 302 (305)
T ss_dssp -SSCCCEEEEC-TTSCEEEEEETTEEEEE
T ss_pred -CCceeEEEEe-CCCCEEEEEcCCeEEEE
Confidence 2247889976 99999998887654443
No 223
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.42 E-value=3.2e-06 Score=105.17 Aligned_cols=195 Identities=12% Similarity=0.143 Sum_probs=122.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEEC-----CCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCC----------
Q 001287 34 IPATASILAFDHIQRLLAIATL-----DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDN---------- 98 (1107)
Q Consensus 34 ~~~~i~~lafsp~~~~LA~Gs~-----dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~---------- 98 (1107)
+...+..++|||||++||.+.. ...|+|||+.+.+.+...-+......++|+ |+..|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSART 205 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence 4457888999999999997543 357999999877654332121123678999 999999998774
Q ss_pred ---cEEEEEcCCCee----eeee-c-cCCCeEEEEEecCCCEEEEEcC----CCcEEEEEeecCCCceeecceeeccccc
Q 001287 99 ---EIQVWSLESRSL----ACCL-K-WESNITAFSVISGSHFMYIGDE----NGLMSVIKYDADEGKLFQLPYNISADAL 165 (1107)
Q Consensus 99 ---~I~vWDl~s~~~----~~~~-~-~~~~Vt~l~~~~~~~~l~~g~~----dg~V~vw~~d~~~~~l~~~~~~i~~~~~ 165 (1107)
.|.+|++.+... +... . +...+..+.++|++++|++... ...|++++++...+.+.. +..+.
T Consensus 206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~----l~~~~- 280 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT----VQGDL- 280 (693)
T ss_dssp CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE----EECSS-
T ss_pred CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEE----EeCCC-
Confidence 399999987642 2222 2 3445788999999998876543 236666665543333332 22222
Q ss_pred ccccCCCCCCCCCeEEEEcccCCCCCEEEEEEC----CCeEEEEEccCCEE---EEEeCCccccccccccCCCCCCCCcc
Q 001287 166 SEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE----NALVILWDVSEAQI---IFVGGGKDLQLKDGVVDSPSEGDSTF 238 (1107)
Q Consensus 166 ~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~----dg~V~vwdl~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~ 238 (1107)
...... +.| ++..|+..+. ++.|.++|+.++.. ..+..+
T Consensus 281 -----------~~~~~~-~~~--~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~-------------------- 326 (693)
T 3iuj_A 281 -----------DADVSL-VDN--KGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE-------------------- 326 (693)
T ss_dssp -----------SSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC--------------------
T ss_pred -----------CceEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC--------------------
Confidence 334443 434 3455555443 35788899887543 223322
Q ss_pred ccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCC---cEEEEeCCC
Q 001287 239 LEGISEHQPEEKEISALCWASSSGSILAVGYIDG---DILLWNTST 281 (1107)
Q Consensus 239 ~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG---~I~lWd~~~ 281 (1107)
...+. .| ++++++|+..+.++ .|.+|++.+
T Consensus 327 ----------~~~~~--~~-s~~g~~lv~~~~~~g~~~l~~~d~~g 359 (693)
T 3iuj_A 327 ----------RQQVL--TV-HSGSGYLFAEYMVDATARVEQFDYEG 359 (693)
T ss_dssp ----------CSSCE--EE-EEETTEEEEEEEETTEEEEEEECTTS
T ss_pred ----------CCCEE--EE-EEECCEEEEEEEECCeeEEEEEECCC
Confidence 22222 44 47888887776654 688888763
No 224
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.41 E-value=0.015 Score=73.13 Aligned_cols=207 Identities=11% Similarity=0.070 Sum_probs=120.7
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeC-C-------CCCCEEEEEEEe--CCCEEEEEeCCCcEEEEEc
Q 001287 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS-P-------SQLPYKNLEFLQ--NQGFLISITNDNEIQVWSL 105 (1107)
Q Consensus 36 ~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~-~-------h~~~V~~l~fs~--d~~~L~S~s~d~~I~vWDl 105 (1107)
..|.+|..++++..|-+|+.++-+..|+.......... . ....|.++.... ++ .|..++.++-|..+|.
T Consensus 66 n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g-~lwi~t~~~gl~~~~~ 144 (781)
T 3v9f_A 66 NELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGK-GLWVCTYYRGIEYLDI 144 (781)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTS-EEEEEESSSCEEEEET
T ss_pred cccceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCC-CEEEEECCCCeeEEEC
Confidence 34889999999984557888856999998755543321 1 123688887776 54 4555665666999999
Q ss_pred CCCeeeeeec------cCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCe
Q 001287 106 ESRSLACCLK------WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1107)
Q Consensus 106 ~s~~~~~~~~------~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1107)
.+++...... ....|.++..+.++. |.+|+.++-+.. ++...+++.. |...... . .......|
T Consensus 145 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lwigt~~~Gl~~--~~~~~~~~~~--~~~~~~~---~---~~l~~~~i 213 (781)
T 3v9f_A 145 ATGKFTHYNKSTVPALPSEQTWTATEAEDGK-LYIGHVEGGLSI--LSLNDKSVKH--FVHDPQN---P---NSLPGNDV 213 (781)
T ss_dssp TTTEEEEESTTTCTTCSCCCEEEEEEEETTE-EEEEETTTEEEE--EETTTTEEEE--ECC--------------CCSSE
T ss_pred CCCeEEeeccCcccCCCccceEEEEECCCCC-EEEEecCCCeEE--EcCCCCceEe--eecCCCC---c---ccCCCCce
Confidence 8876543321 124588888877665 455666543544 4444444432 1110000 0 00011458
Q ss_pred EEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeec
Q 001287 180 VGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS 259 (1107)
Q Consensus 180 ~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~s 259 (1107)
.++...+ ++. |.+|..+ -+.+||..+++...+... ..... ......|.+++..
T Consensus 214 ~~i~~d~--~g~-lwigt~~-Gl~~~d~~~~~~~~~~~~-------------~~~~~---------~l~~~~i~~i~~d- 266 (781)
T 3v9f_A 214 RCIYKDT--NGN-IWIGTSK-GLALFNANTETFTNFHNN-------------PGNIH---------GALSSYIFSIKQL- 266 (781)
T ss_dssp EEEEECT--TCC-EEEEETT-EEEEEETTTTEEEC---------------------------------CCCCEEEEEEC-
T ss_pred eEEEEcC--CCC-EEEEeCC-cHheECCCCCcEEEEEcC-------------CCccc---------cccCceEEEEEEC-
Confidence 8888744 566 7778776 578899887765433211 00000 0014568888854
Q ss_pred CCCCEEEEEEcCCcEEEEeCCCC
Q 001287 260 SSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 260 pdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
++|. |..|+..+-|.+++..+.
T Consensus 267 ~~g~-lWigt~~~Gl~~~~~~~~ 288 (781)
T 3v9f_A 267 KDNK-LWIATELNGIMILDLQQN 288 (781)
T ss_dssp TTSE-EEEEESSSCEEEEETTCC
T ss_pred CCCC-EEEEeCCCCeEEECCCCC
Confidence 5654 666777566888888655
No 225
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.40 E-value=2.7e-05 Score=87.68 Aligned_cols=227 Identities=10% Similarity=0.073 Sum_probs=129.4
Q ss_pred eeeeecCCCCCeEEEEEcCCCCEEEEEEC--CCcEEEEeCCCcceee-------eCCCCCCEEEEEEEeCCCEEEEEeC-
Q 001287 27 RIAVHYGIPATASILAFDHIQRLLAIATL--DGRIKVIGGDGIEGLL-------ISPSQLPYKNLEFLQNQGFLISITN- 96 (1107)
Q Consensus 27 ~~~~~~G~~~~i~~lafsp~~~~LA~Gs~--dg~I~iw~~~~~~~~~-------~~~h~~~V~~l~fs~d~~~L~S~s~- 96 (1107)
+.+..+. ..+..++++|+++++++... +|.++||.++...... ...|-..+..++|++++..+++-..
T Consensus 10 ~~v~~~~--~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~ 87 (343)
T 2qe8_A 10 EVVAELS--LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGN 87 (343)
T ss_dssp EEEEEES--SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHH
T ss_pred EEEEEcC--CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCC
Confidence 4444444 67889999999999888642 3435555543222221 1124468999999999654443322
Q ss_pred ----CCcEEEEEcCCCeeeeeeccC-------CCeEEEEEecCCCEEEEEc----CCCcEEEEEeecCCCceeecceeec
Q 001287 97 ----DNEIQVWSLESRSLACCLKWE-------SNITAFSVISGSHFMYIGD----ENGLMSVIKYDADEGKLFQLPYNIS 161 (1107)
Q Consensus 97 ----d~~I~vWDl~s~~~~~~~~~~-------~~Vt~l~~~~~~~~l~~g~----~dg~V~vw~~d~~~~~l~~~~~~i~ 161 (1107)
++.|.+||+.+++++..+..+ ..+..+++++++.++++++ .++.|.+|+++. +++... +.
T Consensus 88 ~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~--g~~~r~---~~ 162 (343)
T 2qe8_A 88 QSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT--GLAARV---LQ 162 (343)
T ss_dssp HHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT--CCEEEE---CT
T ss_pred CcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC--CCEEEE---ec
Confidence 578999999999877666432 3468899998776777665 467777777653 443321 21
Q ss_pred ccccc-----------cccC--CCCC----CCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCcccccc
Q 001287 162 ADALS-----------EKAG--FPLL----SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLK 224 (1107)
Q Consensus 162 ~~~~~-----------~~~~--~~~~----~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~ 224 (1107)
+|... +.+. .... -...+.+|+++| ++..|+++...+. ++|.+....... .........
T Consensus 163 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~--dg~~ly~~~~~~~-~l~~~~~~~~~~-~~~~~~~~~ 238 (343)
T 2qe8_A 163 GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA--ENEWLYLSPMHST-SMYRIKSADLSN-LQLTDAELG 238 (343)
T ss_dssp TCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT--TSCEEEEEESSCS-EEEEEEHHHHTC-TTCCHHHHH
T ss_pred CCCcccccccceeECCEEEEeccCCCceeceecccceeEecc--CCCEEEEEeCCCC-eEEEEEHHHhcC-CCCChhhhh
Confidence 11000 0000 0000 013478999988 6777888877774 555544211000 000000000
Q ss_pred ccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCC
Q 001287 225 DGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1107)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~ 281 (1107)
..+ ...+ +......+++. ++|..+++...++.|.+||..+
T Consensus 239 ~~~--------~~~g--------~~g~pdgia~d-~~G~l~va~~~~~~V~~~d~~~ 278 (343)
T 2qe8_A 239 SKI--------ERYS--------EKPICDGISID-KDHNIYVGDLAHSAIGVITSAD 278 (343)
T ss_dssp TTC--------EEEE--------ECCSCSCEEEC-TTCCEEEEEGGGTEEEEEETTT
T ss_pred cce--------Eecc--------cCCCCceEEEC-CCCCEEEEccCCCeEEEEECCC
Confidence 000 0000 02234567865 8999889888999999999843
No 226
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.39 E-value=6.4e-06 Score=102.38 Aligned_cols=121 Identities=12% Similarity=0.114 Sum_probs=79.1
Q ss_pred CCCCCEEEEEEEeCCCEEEEEeC-----CCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCc--------
Q 001287 74 PSQLPYKNLEFLQNQGFLISITN-----DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGL-------- 140 (1107)
Q Consensus 74 ~h~~~V~~l~fs~d~~~L~S~s~-----d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~-------- 140 (1107)
+|...+..++|||||.+|+-+.+ ..+|+|||+++++.+...........++|+ +++.|+.+..+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 35567899999999998874332 256999999999876543221223567899 9998888876643
Q ss_pred -----EEEEEeecCCCceeecceeecc-cccccccCCCCCCCCCeEEEEcccCCCCCEEEEEEC----CCeEEEEEccCC
Q 001287 141 -----MSVIKYDADEGKLFQLPYNISA-DALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE----NALVILWDVSEA 210 (1107)
Q Consensus 141 -----V~vw~~d~~~~~l~~~~~~i~~-~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~----dg~V~vwdl~~~ 210 (1107)
|++|++......-.. .|..+. +. ..+.++.|+| +|++|++... +..|.+||+.++
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~-v~~~~~~~~------------~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~i~~~d~~~~ 269 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRL-VFGAIPAQH------------HRYVGATVTE--DDRFLLISAANSTSGNRLYVKDLSQE 269 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEE-EESCSGGGC------------CSEEEEEECT--TSCEEEEEEESSSSCCEEEEEETTST
T ss_pred CCCcEEEEEECCCCcccceE-EEecCCCCC------------eEEEEEEEcC--CCCEEEEEEccCCCCcEEEEEECCCC
Confidence 777776543221111 122222 22 4578899988 6877765543 247889998765
No 227
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.35 E-value=3.3e-05 Score=85.26 Aligned_cols=155 Identities=12% Similarity=0.064 Sum_probs=107.1
Q ss_pred CCeEEEEEcCCCC-EEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee
Q 001287 36 ATASILAFDHIQR-LLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1107)
Q Consensus 36 ~~i~~lafsp~~~-~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~ 114 (1107)
.-....+|+|+++ ++.++..++.|..|+.++. ......+...+..++|+++|..+++...++.|.+||.+ ++.....
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~ 122 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLV 122 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTTTEEEEEETTSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred cCccCCeEeCCCCEEEEEECCCCEEEEEeCCCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEE
Confidence 3456789999998 7778888899999998554 33333455678999999998755555556889999987 5443322
Q ss_pred c-c----CCCeEEEEEecCCCEEEE----EcCC-----------CcEEEEEeecCCCceeecceeecccccccccCCCCC
Q 001287 115 K-W----ESNITAFSVISGSHFMYI----GDEN-----------GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLL 174 (1107)
Q Consensus 115 ~-~----~~~Vt~l~~~~~~~~l~~----g~~d-----------g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~ 174 (1107)
. . ...+..+++++++++.++ |..+ +.-.||.++..++++... . ..
T Consensus 123 ~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~---~--~~---------- 187 (305)
T 3dr2_A 123 GRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM---A--DL---------- 187 (305)
T ss_dssp CEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE---E--EE----------
T ss_pred eccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE---e--cC----------
Confidence 1 1 134678999999987775 3321 234677777655665542 1 11
Q ss_pred CCCCeEEEEcccCCCCCEEEEEECC------CeEEEEEccCCE
Q 001287 175 SHQPVVGVLPHPNSSGNRVLIAYEN------ALVILWDVSEAQ 211 (1107)
Q Consensus 175 ~~~~V~~v~f~P~~~~~~ll~~~~d------g~V~vwdl~~~~ 211 (1107)
.....++|+| +++.|+++... +.|.+|++..+.
T Consensus 188 --~~p~gl~~sp--dg~~lyv~~~~~~~~~~~~i~~~~~~~~~ 226 (305)
T 3dr2_A 188 --DHPNGLAFSP--DEQTLYVSQTPEQGHGSVEITAFAWRDGA 226 (305)
T ss_dssp --SSEEEEEECT--TSSEEEEEECCC---CCCEEEEEEEETTE
T ss_pred --CCCcceEEcC--CCCEEEEEecCCcCCCCCEEEEEEecCCC
Confidence 4478899988 67777777765 789999988765
No 228
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.33 E-value=1.4e-05 Score=91.85 Aligned_cols=206 Identities=11% Similarity=0.046 Sum_probs=124.7
Q ss_pred EEEEcCCCCEEEEEE----------CCCcEEEEeCCCcceee--eCC------CCCCEEEEEEEeCCCEEEEEeC--CCc
Q 001287 40 ILAFDHIQRLLAIAT----------LDGRIKVIGGDGIEGLL--ISP------SQLPYKNLEFLQNQGFLISITN--DNE 99 (1107)
Q Consensus 40 ~lafsp~~~~LA~Gs----------~dg~I~iw~~~~~~~~~--~~~------h~~~V~~l~fs~d~~~L~S~s~--d~~ 99 (1107)
-++++||+++|.++. .++.|.++|....+.+- ..+ ....-..+.|+||+++|+.+.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 799999999998886 46889999997665542 122 0123457899999999998874 588
Q ss_pred EEEEEcCCCeeeeeeccCCC--------eEEEEEecCCCEEEEEcCCCcEE-----------------------------
Q 001287 100 IQVWSLESRSLACCLKWESN--------ITAFSVISGSHFMYIGDENGLMS----------------------------- 142 (1107)
Q Consensus 100 I~vWDl~s~~~~~~~~~~~~--------Vt~l~~~~~~~~l~~g~~dg~V~----------------------------- 142 (1107)
|.|.|+.+++++..+...+. -..+++++++.++++...++.+.
T Consensus 202 VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~ 281 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVW 281 (426)
T ss_dssp EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEE
Confidence 99999999998877754331 11234445555554444333322
Q ss_pred --------EEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEEC----------CCeEEE
Q 001287 143 --------VIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE----------NALVIL 204 (1107)
Q Consensus 143 --------vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~----------dg~V~v 204 (1107)
+.+.....-.+.. ++.+..... ...+ ........++++| ++.+++++.. ++.|.+
T Consensus 282 ~s~~g~V~ViD~~~~~~~v~~-~~~~~~~~~-i~~g---~~p~g~~~va~s~--dg~rlyVa~~~~~~gthk~~s~~VsV 354 (426)
T 3c75_H 282 PTYTGKIFQADLTAEGATFRA-PIEALTEAE-RADD---WRPGGWQQTAYHR--QSDRIYLLVDQRDEWKHKAASRFVVV 354 (426)
T ss_dssp EBTTSEEEEEEECSSCEEECC-CEESSCTTT-GGGT---EEECSSSCEEEEG--GGTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred EeCCCcEEEEeccCCceEEee-eeeeccccc-cccc---cccCCceeeEEcC--CCCEEEEEecccccccccCCCCEEEE
Confidence 1111110000000 000000000 0000 0001112257777 5677777653 357999
Q ss_pred EEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCC-EEEEEE-cCCcEEEEeCCCC
Q 001287 205 WDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGY-IDGDILLWNTSTT 282 (1107)
Q Consensus 205 wdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~-~l~sg~-~dG~I~lWd~~~~ 282 (1107)
+|..+.+++....- .....++.| +|||+ ++++.. .+++|.++|..+.
T Consensus 355 ID~~T~kvv~~I~v------------------------------g~~P~gia~-spDg~~~lyv~n~~s~~VsVID~~t~ 403 (426)
T 3c75_H 355 LNAETGERINKIEL------------------------------GHEIDSINV-SQDAEPLLYALSAGTQTLHIYDAATG 403 (426)
T ss_dssp EETTTCCEEEEEEE------------------------------EEEECEEEE-CCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred EECCCCeEEEEEEC------------------------------CCCcCeEEE-ccCCCEEEEEEcCCCCeEEEEECCCC
Confidence 99999988654421 224667886 49999 888887 5999999999877
Q ss_pred C
Q 001287 283 A 283 (1107)
Q Consensus 283 ~ 283 (1107)
+
T Consensus 404 k 404 (426)
T 3c75_H 404 E 404 (426)
T ss_dssp C
T ss_pred C
Confidence 4
No 229
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=98.32 E-value=2.7e-07 Score=78.16 Aligned_cols=64 Identities=27% Similarity=0.530 Sum_probs=52.6
Q ss_pred CCCCHHHHHHHhccCCChHHHHHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHHHHHHhhcccccc
Q 001287 1036 RLRTREEIIAKYRKAEDASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRKWWK 1106 (1107)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~~~~~~~ 1106 (1107)
....+.+|+.. -.++...+..+-+++.||||||+.|.+||++|++.|+.|..-|++|- .+.|||
T Consensus 13 ~~d~l~~vq~e---l~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~----rk~wwk 76 (80)
T 1l4a_A 13 QSKRLQQTQAQ---VEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLK----RKFWWK 76 (80)
T ss_dssp CSCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHH----HHCC--
T ss_pred cccHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 34556667666 44556899999999999999999999999999999999999998884 456886
No 230
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.32 E-value=0.00018 Score=88.76 Aligned_cols=112 Identities=13% Similarity=0.159 Sum_probs=68.4
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeccCCC-----------e-EEEEEecCCCEEEEEcCCCcEEEEEeecCCCceee
Q 001287 88 QGFLISITNDNEIQVWSLESRSLACCLKWESN-----------I-TAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQ 155 (1107)
Q Consensus 88 ~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~-----------V-t~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~ 155 (1107)
+..|+.++.++.|.-+|..+++.+..+..... + ..+++ .+..+++++.+|.|+. +|..+|++.-
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~A--lDa~TG~~~W 145 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEA--IDAKTGQRAW 145 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEE--EETTTCCEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEE--EECCCCCEee
Confidence 56788888899999999999999877743321 0 11222 4678999999997655 5555677763
Q ss_pred cceeeccc-ccccccCCCCCCCCCeEEEEcccCCCCCEEEEEEC------CCeEEEEEccCCEEEEEeC
Q 001287 156 LPYNISAD-ALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE------NALVILWDVSEAQIIFVGG 217 (1107)
Q Consensus 156 ~~~~i~~~-~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~------dg~V~vwdl~~~~~~~~~g 217 (1107)
++... .. .....+...|.-.+..++++.. +|.|..||..+++.++.+.
T Consensus 146 ---~~~~~~~~-----------~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 146 ---SVDTRADH-----------KRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp ---EEECCSCT-----------TSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred ---eecCcCCC-----------CCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 23211 00 0001111112111233666543 6899999999999987653
No 231
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.29 E-value=0.00012 Score=90.15 Aligned_cols=189 Identities=11% Similarity=0.062 Sum_probs=107.7
Q ss_pred cccCCCCcEEEEEecCC-------------------cEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCC-
Q 001287 489 TKCHSVDRVYLAGYHDG-------------------SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN- 548 (1107)
Q Consensus 489 ~~~s~~~~~laTgs~Dg-------------------tIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~- 548 (1107)
.++.+++.+++.+..++ +|..+|..++.....+.....-. .+... ......+....+|
T Consensus 248 ~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~-wd~~~-~~~p~l~~~~~dG~ 325 (677)
T 1kb0_A 248 MTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDN-WDYTS-TQPMILADIKIAGK 325 (677)
T ss_dssp EEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCC-SCCCC-CSCCEEEEEEETTE
T ss_pred eeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcc-ccccc-CCCcEEEecccCCc
Confidence 35667777777776654 59999999998765444321100 00011 1223334555688
Q ss_pred --CeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCccee-----------EEEEeecCcC--EEEEEEcC
Q 001287 549 --SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLC-----------RAVFSLVNSP--VRALQFTS 613 (1107)
Q Consensus 549 --~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-----------~~~~~~h~~~--Vt~la~sp 613 (1107)
..|++++.+|.|.++|..+...--...+.... -...+. ..+-.. ...+-...+. =..++|+|
T Consensus 326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~--~~~~~d-~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp 402 (677)
T 1kb0_A 326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVN--WASGYD-KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP 402 (677)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS--SEEEEC-TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET
T ss_pred EeeEEEEECCCCEEEEEECCCCCEeccccccccC--cccccC-CCCceeeccccCcCCCccEECcCcccccCCCCceEcC
Confidence 68899999999999998765321111100000 000000 000000 0000000000 02578899
Q ss_pred CCCEEEEEeC-------------------------------------------CCeEEEEEcCCCeEEEEeecCCCCCCc
Q 001287 614 SGAKLAVGFE-------------------------------------------CGRVAVLDMNLLSVLFFTDDISGSSSP 650 (1107)
Q Consensus 614 ~~~~la~Gs~-------------------------------------------dg~V~iwd~~~~~~~~~~~~~~~h~~~ 650 (1107)
+..++.++.. .|.|..||+.+++++++... ..+
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~----~~~ 478 (677)
T 1kb0_A 403 QTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH----VSP 478 (677)
T ss_dssp TTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE----SSS
T ss_pred CCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC----CCC
Confidence 8888877543 27899999999999877653 222
Q ss_pred eEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcceecCC
Q 001287 651 IISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 708 (1107)
Q Consensus 651 V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~i~~~ 708 (1107)
+....+. ..+.++++++.||.|++||..+|+++-+.
T Consensus 479 ~~~g~~~----------------------~~g~~v~~g~~dg~l~a~D~~tG~~lw~~ 514 (677)
T 1kb0_A 479 WNGGTLT----------------------TAGNVVFQGTADGRLVAYHAATGEKLWEA 514 (677)
T ss_dssp CCCCEEE----------------------ETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CcCcceE----------------------eCCCEEEEECCCCcEEEEECCCCceeeee
Confidence 2222233 23667899999999999999999998655
No 232
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.26 E-value=0.00022 Score=88.04 Aligned_cols=191 Identities=7% Similarity=0.002 Sum_probs=106.7
Q ss_pred cccCCCCcEEEEEecCCc-------------------EEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCC
Q 001287 489 TKCHSVDRVYLAGYHDGS-------------------VRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS 549 (1107)
Q Consensus 489 ~~~s~~~~~laTgs~Dgt-------------------IriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~ 549 (1107)
.++.++..+++.+..+++ |..||+.+++....+....... ... ....++.......+|+
T Consensus 240 ~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~-wd~-~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 240 FAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDA-WDY-TATQHMILAELPIDGK 317 (689)
T ss_dssp EEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCC-SCC-CCCSCEEEEEEEETTE
T ss_pred eeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCccc-ccc-cCCCCcEEEeeccCCc
Confidence 366777778888877764 9999999998764443221000 000 0112233334445675
Q ss_pred ---eEEEeccCceEEEEEecCCCCCccceeeccCc-Ccc-----eec-----c--cCCcceeEEEEeec-Cc-CEEEEEE
Q 001287 550 ---SLAVGNEFGLVYIYNLNGSLDAKNFLFVLETK-SEV-----HAL-----P--EGKISLCRAVFSLV-NS-PVRALQF 611 (1107)
Q Consensus 550 ---~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~-~~~-----~~~-----~--~~~g~~~~~~~~~h-~~-~Vt~la~ 611 (1107)
.|+.++.+|.++++|..+...-....+....- ..+ ..+ . ..++-. ...+-.. .+ .-..++|
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~-~~~~p~~~Gg~~w~~~a~ 396 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKR-NLVTPAFWGAHDWQPMSY 396 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSC-EEESSCTTCSSCSSCCEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCe-eEeCCCcccccCCCcceE
Confidence 78899999999999986653211111110000 000 000 0 000000 0000000 00 0123788
Q ss_pred cCCCCEEEEEeC---------------------------------------------CCeEEEEEcCCCeEEEEeecCCC
Q 001287 612 TSSGAKLAVGFE---------------------------------------------CGRVAVLDMNLLSVLFFTDDISG 646 (1107)
Q Consensus 612 sp~~~~la~Gs~---------------------------------------------dg~V~iwd~~~~~~~~~~~~~~~ 646 (1107)
+|+..++.++.. +|.|..||+.+++++++...
T Consensus 397 dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~--- 473 (689)
T 1yiq_A 397 NPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY--- 473 (689)
T ss_dssp ETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE---
T ss_pred CCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC---
Confidence 888777776532 37899999999999887654
Q ss_pred CCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcceecCC
Q 001287 647 SSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 708 (1107)
Q Consensus 647 h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~i~~~ 708 (1107)
+ .++..-.+. ..+.++++++.||.|++||.+||++|-+.
T Consensus 474 ~-~~~~~g~~~----------------------tagglvf~gt~dg~l~a~D~~tG~~lw~~ 512 (689)
T 1yiq_A 474 V-TIFNGGTLS----------------------TAGNLVFEGSADGRVIAYAADTGEKLWEQ 512 (689)
T ss_dssp S-SSCCCCEEE----------------------ETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred C-CCccCccce----------------------ECCCEEEEECCCCcEEEEECCCCccceee
Confidence 1 222222233 23678999999999999999999988543
No 233
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.25 E-value=0.04 Score=71.37 Aligned_cols=119 Identities=14% Similarity=0.093 Sum_probs=75.8
Q ss_pred CeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCC---
Q 001287 538 PVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS--- 614 (1107)
Q Consensus 538 ~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~--- 614 (1107)
.|.+.+.. +..++.+. .+.+.++.++...- ..... ......|+|+++.|.
T Consensus 515 ~I~~As~n--~~~vvva~-g~~l~~fel~~~~L-----------------------~~~~~-~~l~~evscl~i~~~~~~ 567 (1158)
T 3ei3_A 515 NISVASCN--SSQVVVAV-GRALYYLQIHPQEL-----------------------RQISH-TEMEHEVACLDITPLGDS 567 (1158)
T ss_dssp CCCEEEEC--SSEEEEEE-TTEEEEEEEETTEE-----------------------EEEEE-EECSSCEEEEECCCCSSS
T ss_pred EEEEEEeC--CCEEEEEE-CCEEEEEEeeCCce-----------------------eeecc-cCCCCceEEEEeecCCCC
Confidence 56655543 34666664 67888887764210 01111 224668999999863
Q ss_pred ---CCEEEEEeC-CCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcC
Q 001287 615 ---GAKLAVGFE-CGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFK 690 (1107)
Q Consensus 615 ---~~~la~Gs~-dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~ 690 (1107)
+.++|+|.. |++|+|+++.+.+.+.... +.+ .....++.+... .+..+|++|..
T Consensus 568 ~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~-L~~-~~~p~si~l~~~--------------------~~~~~L~igl~ 625 (1158)
T 3ei3_A 568 NGLSPLCAIGLWTDISARILKLPSFELLHKEM-LGG-EIIPRSILMTTF--------------------ESSHYLLCALG 625 (1158)
T ss_dssp TTCCSEEEEEETTTTEEEEEETTTCCEEEEEE-CCS-SCCEEEEEEEEE--------------------TTEEEEEEEET
T ss_pred cccccEEEEEECCCCEEEEEECCCCCeEEEEE-CCC-CCCCcEEEEEEe--------------------CCCcEEEEEeC
Confidence 479999997 9999999999877664333 222 234455555422 12568999999
Q ss_pred CceEE--EEeCCCccee
Q 001287 691 DAKIS--IVGGSSENMI 705 (1107)
Q Consensus 691 Dg~v~--v~d~~~g~~i 705 (1107)
||.+. .+|..+|.+.
T Consensus 626 dG~l~~~~~d~~tg~l~ 642 (1158)
T 3ei3_A 626 DGALFYFGLNIETGLLS 642 (1158)
T ss_dssp TSEEEEEEECTTTCCEE
T ss_pred CCeEEEEEEcCCCCccc
Confidence 99974 5666666654
No 234
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=98.21 E-value=1.2e-06 Score=70.55 Aligned_cols=48 Identities=27% Similarity=0.459 Sum_probs=45.2
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHHHHHHh
Q 001287 1052 DASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTM 1099 (1107)
Q Consensus 1052 ~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~ 1099 (1107)
++-..+..+-+++.||||||+.|.+||++|++.|+.|..-|++|.++|
T Consensus 15 ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r~m 62 (63)
T 1n7s_A 15 EVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456899999999999999999999999999999999999999999886
No 235
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.21 E-value=0.037 Score=69.43 Aligned_cols=212 Identities=9% Similarity=0.086 Sum_probs=117.5
Q ss_pred CeEEEEEcC--CCCEEEEEECCCcEEEEeCCCcceeeeCC------CCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCC
Q 001287 37 TASILAFDH--IQRLLAIATLDGRIKVIGGDGIEGLLISP------SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR 108 (1107)
Q Consensus 37 ~i~~lafsp--~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~------h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~ 108 (1107)
.|.++..+. ++.+ -+|+.++.|..|+........... ....|.++....++. |..++.++-|..||..++
T Consensus 116 ~i~~i~~d~~~~g~l-wi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~ 193 (781)
T 3v9f_A 116 DVTHITSSVQAGKGL-WVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTATEAEDGK-LYIGHVEGGLSILSLNDK 193 (781)
T ss_dssp CEEEEEECSSTTSEE-EEEESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEEEEEEETTE-EEEEETTTEEEEEETTTT
T ss_pred cceEEEecCccCCCE-EEEECCCCeeEEECCCCeEEeeccCcccCCCccceEEEEECCCCC-EEEEecCCCeEEEcCCCC
Confidence 588888888 6654 567755568888876554433221 134588888877754 444666656999999887
Q ss_pred eeeeeec--------cCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeE
Q 001287 109 SLACCLK--------WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1107)
Q Consensus 109 ~~~~~~~--------~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1107)
+...... ....|.++..+.++.+. +|+.+| +.+++ ..++++.. +...... ........|.
T Consensus 194 ~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lw-igt~~G-l~~~d--~~~~~~~~--~~~~~~~------~~~l~~~~i~ 261 (781)
T 3v9f_A 194 SVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIW-IGTSKG-LALFN--ANTETFTN--FHNNPGN------IHGALSSYIF 261 (781)
T ss_dssp EEEEECC--------CCSSEEEEEECTTCCEE-EEETTE-EEEEE--TTTTEEEC-------------------CCCCEE
T ss_pred ceEeeecCCCCcccCCCCceeEEEEcCCCCEE-EEeCCc-HheEC--CCCCcEEE--EEcCCCc------cccccCceEE
Confidence 6543210 12468899888777644 455554 55544 44444442 2111100 0001125688
Q ss_pred EEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecC
Q 001287 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1107)
Q Consensus 181 ~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp 260 (1107)
++...+ ++. |.+|+..+-|.++|..+.....+... .+.. +. ..... .......|.+++.. +
T Consensus 262 ~i~~d~--~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~-~f~~---~~--~~~~~---------~~l~~~~v~~i~~D-~ 322 (781)
T 3v9f_A 262 SIKQLK--DNK-LWIATELNGIMILDLQQNQFLLPEQI-RFEF---IR--EGDNN---------YSLSNASARYIFQD-S 322 (781)
T ss_dssp EEEECT--TSE-EEEEESSSCEEEEETTCC----------CEE---EC--BCSST---------TSBSSSCEEEEEEC-S
T ss_pred EEEECC--CCC-EEEEeCCCCeEEECCCCCeeeeeecc-cccc---cc--CCCCC---------CCCCCCeEEEEEEe-C
Confidence 988844 565 88888855668889887765432210 0000 00 00000 00115578898854 6
Q ss_pred CCCEEEEEEcCCcEEEEeCCCC
Q 001287 261 SGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 261 dg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
+|. |-.|+.++-|..|+..+.
T Consensus 323 ~g~-lWigt~~~Gl~~~~~~~~ 343 (781)
T 3v9f_A 323 FNN-IWIGTWGGGINFISNAPP 343 (781)
T ss_dssp SCC-EEEEEBSSCEEEECSSCC
T ss_pred CCC-EEEEecCCeEEEeCCCCC
Confidence 665 667777777888887644
No 236
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=98.18 E-value=1.7e-06 Score=75.77 Aligned_cols=60 Identities=25% Similarity=0.406 Sum_probs=51.2
Q ss_pred CCCHHHHHHHhccCCChHHHHHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHHHHHHh
Q 001287 1037 LRTREEIIAKYRKAEDASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTM 1099 (1107)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~ 1099 (1107)
...+.+|+.. -.++...+..+-+++.||||||+.|.+||++|+..|+.|..-|++|.++|
T Consensus 29 ~d~l~~vq~e---ldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkm 88 (96)
T 1sfc_A 29 NRRLQQTQAQ---VDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 88 (96)
T ss_dssp SHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556655 44556899999999999999999999999999999999999999998774
No 237
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.13 E-value=7.5e-05 Score=83.99 Aligned_cols=200 Identities=9% Similarity=-0.025 Sum_probs=126.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEEC-----CCcEEEEeCCCccee--eeC-----CCCCCEEEEEEEeCCCEE-EEEe---CC
Q 001287 34 IPATASILAFDHIQRLLAIATL-----DGRIKVIGGDGIEGL--LIS-----PSQLPYKNLEFLQNQGFL-ISIT---ND 97 (1107)
Q Consensus 34 ~~~~i~~lafsp~~~~LA~Gs~-----dg~I~iw~~~~~~~~--~~~-----~h~~~V~~l~fs~d~~~L-~S~s---~d 97 (1107)
+-..+..++++|+++++++-+. ++.|.+||..+.+++ ... .+...+..++|+++++++ ++-. .+
T Consensus 65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~ 144 (343)
T 2qe8_A 65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDK 144 (343)
T ss_dssp CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCC
Confidence 3457889999999988777654 589999998654432 222 123456899999865555 4444 57
Q ss_pred CcEEEEEcCCCeeeeeecc------------------------------CCCeEEEEEecCCCEEEEEcCCCcEEEEEee
Q 001287 98 NEIQVWSLESRSLACCLKW------------------------------ESNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1107)
Q Consensus 98 ~~I~vWDl~s~~~~~~~~~------------------------------~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d 147 (1107)
+.|.+||+.+++....+.. ...+..+++++++++|+++...+. ++|.++
T Consensus 145 ~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~ 223 (343)
T 2qe8_A 145 AALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYRIK 223 (343)
T ss_dssp CEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEEEE
T ss_pred CeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEEEE
Confidence 8899999998866543311 123678999999999999987775 667776
Q ss_pred cC---CCceeec----ceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCcc
Q 001287 148 AD---EGKLFQL----PYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKD 220 (1107)
Q Consensus 148 ~~---~~~l~~~----~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~ 220 (1107)
.. .+.+... .+...++ ...+.++++.+ +|..+++.+.++.|.+||..+++...+...
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~------------~g~pdgia~d~--~G~l~va~~~~~~V~~~d~~~G~~~~~~~~-- 287 (343)
T 2qe8_A 224 SADLSNLQLTDAELGSKIERYSE------------KPICDGISIDK--DHNIYVGDLAHSAIGVITSADRAYKLLVTD-- 287 (343)
T ss_dssp HHHHTCTTCCHHHHHTTCEEEEE------------CCSCSCEEECT--TCCEEEEEGGGTEEEEEETTTTEEEEEEEC--
T ss_pred HHHhcCCCCChhhhhcceEeccc------------CCCCceEEECC--CCCEEEEccCCCeEEEEECCCCCEEEEEEC--
Confidence 31 1111000 0000011 13456788866 688777777889999999855654333211
Q ss_pred ccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEE
Q 001287 221 LQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLW 277 (1107)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lW 277 (1107)
. .-..++++++. ++|..+++....+.+.+|
T Consensus 288 ~--------------------------~~~~p~~va~~-~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 288 E--------------------------KLSWTDSFNFG-SDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp G--------------------------GGSCEEEEEEC-TTSCEEEEECCGGGSGGG
T ss_pred C--------------------------ceecCCeeEEC-CCCcEEEEeCcccccccc
Confidence 0 02346788865 888877776655444333
No 238
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.12 E-value=3.9e-07 Score=103.99 Aligned_cols=180 Identities=15% Similarity=0.136 Sum_probs=97.2
Q ss_pred CCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeeccC--CCeEE-
Q 001287 46 IQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE--SNITA- 122 (1107)
Q Consensus 46 ~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~--~~Vt~- 122 (1107)
++.+|++|+.||.|+.||....+.+-.... +++.+..+..++..+++++.|+.|..||..+++.+...... ..+.+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 578999999999999999866555533333 55666666677777787789999999999998876554322 11100
Q ss_pred EEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeE
Q 001287 123 FSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALV 202 (1107)
Q Consensus 123 l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V 202 (1107)
..+ ..+..+++|+.+|.|+.|+.. +|+... ++..+. .+.+.| .+..+++++.++.|
T Consensus 87 p~~-~~~~~v~~g~~dg~v~a~D~~--tG~~~w---~~~~~~----------------~~~~~p--~~~~v~~~~~dg~v 142 (369)
T 2hz6_A 87 PCR-SSDGILYMGKKQDIWYVIDLL--TGEKQQ---TLSSAF----------------ADSLSP--STSLLYLGRTEYTI 142 (369)
T ss_dssp SCC------CCCCEEEEEEEEECCC---------------------------------------------EEEEEEEEEE
T ss_pred ceE-ecCCEEEEEeCCCEEEEEECC--CCcEEE---EecCCC----------------cccccc--cCCEEEEEecCCEE
Confidence 011 135578888888977776654 466542 233211 123445 45568999999999
Q ss_pred EEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCC---CEEEEEEcCCcEEEEeC
Q 001287 203 ILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG---SILAVGYIDGDILLWNT 279 (1107)
Q Consensus 203 ~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg---~~l~sg~~dG~I~lWd~ 279 (1107)
..||..+++.++.+.... ..+.+ ...++ ..+++++.||.|..||.
T Consensus 143 ~a~d~~tG~~~W~~~~~~-------------------------------~~~~~-~~~~~~~~~~v~~~~~dg~v~a~d~ 190 (369)
T 2hz6_A 143 TMYDTKTRELRWNATYFD-------------------------------YAASL-PEDDVDYKMSHFVSNGDGLVVTVDS 190 (369)
T ss_dssp ECCCSSSSSCCCEEEEEE-------------------------------ECCBC-CCCCTTCCCCEEEEETSCEEEEECT
T ss_pred EEEECCCCCEEEeEeccc-------------------------------ccCcc-ccCCccccceEEEECCCCEEEEEEC
Confidence 999999987654432100 00111 11221 45778899999999999
Q ss_pred CCC
Q 001287 280 STT 282 (1107)
Q Consensus 280 ~~~ 282 (1107)
.++
T Consensus 191 ~tG 193 (369)
T 2hz6_A 191 ESG 193 (369)
T ss_dssp TTC
T ss_pred CCC
Confidence 876
No 239
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.05 E-value=2.6e-05 Score=88.08 Aligned_cols=68 Identities=9% Similarity=-0.018 Sum_probs=52.5
Q ss_pred EEEEcCCCCEEEEEE----------CCCcEEEEeCCCcceeeeC--C--C----CCCEEEEEEEeCCCEEEEEeC--CCc
Q 001287 40 ILAFDHIQRLLAIAT----------LDGRIKVIGGDGIEGLLIS--P--S----QLPYKNLEFLQNQGFLISITN--DNE 99 (1107)
Q Consensus 40 ~lafsp~~~~LA~Gs----------~dg~I~iw~~~~~~~~~~~--~--h----~~~V~~l~fs~d~~~L~S~s~--d~~ 99 (1107)
.++|+||+++|.++. .++.|.+||....+.+-.. + . ...-..++|+|||++|+.+.. ++.
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 699999999999987 4688999999776655221 1 0 123568999999999998874 467
Q ss_pred EEE--EEcCC
Q 001287 100 IQV--WSLES 107 (1107)
Q Consensus 100 I~v--WDl~s 107 (1107)
|.| +|..+
T Consensus 149 v~V~~iD~~t 158 (368)
T 1mda_H 149 AGLSVPGASD 158 (368)
T ss_dssp EEEEETTTEE
T ss_pred EEEEEEchhh
Confidence 989 99877
No 240
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.00 E-value=0.00095 Score=71.14 Aligned_cols=223 Identities=9% Similarity=0.041 Sum_probs=132.4
Q ss_pred cccceeeeecCCCCC--eEEEEEcCCCCEEEEEEC---CCcEEEEeCCCcceeeeC--CCCCCEEEEEEEeCCCEEEEEe
Q 001287 23 DLNLRIAVHYGIPAT--ASILAFDHIQRLLAIATL---DGRIKVIGGDGIEGLLIS--PSQLPYKNLEFLQNQGFLISIT 95 (1107)
Q Consensus 23 ~~~~~~~~~~G~~~~--i~~lafsp~~~~LA~Gs~---dg~I~iw~~~~~~~~~~~--~h~~~V~~l~fs~d~~~L~S~s 95 (1107)
....+....+.|+.. ..-|+|+|++. |.+++. ++.|+++|....+++-.. +...-...+++. +.+|..++
T Consensus 6 ~~~~~vv~~~p~~~~~f~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t 82 (266)
T 2iwa_A 6 VYIVEVLNEFPHDPYAFTQGLVYAENDT-LFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVV 82 (266)
T ss_dssp EEEEEEEEEEECCTTCCEEEEEECSTTE-EEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEE
T ss_pred ccCceEEEEEECCCCCCcccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEE
Confidence 345566677777654 57899999864 555443 589999999776665332 221122344444 45665555
Q ss_pred -CCCcEEEEEcCCCeeeeeeccC-CCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCC
Q 001287 96 -NDNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPL 173 (1107)
Q Consensus 96 -~d~~I~vWDl~s~~~~~~~~~~-~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~ 173 (1107)
.++.|.++|..+.+.+..+... ..- ..+.+++++++++..++.|++ +|..+.+.... ..+.... +
T Consensus 83 ~~~~~v~viD~~t~~v~~~i~~g~~~g--~glt~Dg~~l~vs~gs~~l~v--iD~~t~~v~~~-I~Vg~~~--~------ 149 (266)
T 2iwa_A 83 WLKNIGFIYDRRTLSNIKNFTHQMKDG--WGLATDGKILYGSDGTSILYE--IDPHTFKLIKK-HNVKYNG--H------ 149 (266)
T ss_dssp TTCSEEEEEETTTTEEEEEEECCSSSC--CEEEECSSSEEEECSSSEEEE--ECTTTCCEEEE-EECEETT--E------
T ss_pred ecCCEEEEEECCCCcEEEEEECCCCCe--EEEEECCCEEEEECCCCeEEE--EECCCCcEEEE-EEECCCC--c------
Confidence 5789999999999998888554 332 335567888888887776655 55544444432 1111110 0
Q ss_pred CCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCcee
Q 001287 174 LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEIS 253 (1107)
Q Consensus 174 ~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt 253 (1107)
....+..+.|. ++...+....++.|.+.|..+++++.........-. ... ..........
T Consensus 150 -p~~~~nele~~---dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~-~~~---------------~~~~~~~v~n 209 (266)
T 2iwa_A 150 -RVIRLNELEYI---NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKK-LID---------------EGFRDIDVLN 209 (266)
T ss_dssp -ECCCEEEEEEE---TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHH-HHH---------------TTCTTCCCEE
T ss_pred -ccccceeEEEE---CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccc-ccc---------------ccccccCceE
Confidence 00236677774 454344444678999999999988655422100000 000 0000023457
Q ss_pred EEEeecCCCCEE-EEEEcCCcEEEEeCCCC
Q 001287 254 ALCWASSSGSIL-AVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 254 sl~w~spdg~~l-~sg~~dG~I~lWd~~~~ 282 (1107)
.++|. |+++.+ +++...+.+..-++...
T Consensus 210 GIa~~-~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 210 GIAWD-QENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEE-TTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEEc-CCCCEEEEECCCCCeEEEEEEecc
Confidence 89986 888655 55557888888887654
No 241
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.97 E-value=0.00088 Score=70.57 Aligned_cols=214 Identities=9% Similarity=0.100 Sum_probs=131.6
Q ss_pred cccccceeeeecCCCCCe--EEEEEcCCCCEEEEEECCC--cEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEe-
Q 001287 21 AADLNLRIAVHYGIPATA--SILAFDHIQRLLAIATLDG--RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT- 95 (1107)
Q Consensus 21 ~~~~~~~~~~~~G~~~~i--~~lafsp~~~~LA~Gs~dg--~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s- 95 (1107)
++....++...|.|+... --|.|+ ++.+..+.+.+| .|+++|..+.+++....-...+-.....+++.+|..+.
T Consensus 26 ~~~~~~~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw 104 (262)
T 3nol_A 26 IPIYDYQIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTW 104 (262)
T ss_dssp CCEEEEEEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEES
T ss_pred CcccceEEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEe
Confidence 345567778888888777 669999 677666666666 89999998776653333233333322333445665555
Q ss_pred CCCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCC
Q 001287 96 NDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLS 175 (1107)
Q Consensus 96 ~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~ 175 (1107)
.++.+.++|..+.+.+..+.....-..++ ++++.|++.+.++. ||.+|..+.+.... ..+.... +.
T Consensus 105 ~~~~v~v~D~~t~~~~~ti~~~~eG~glt--~dg~~L~~SdGs~~--i~~iDp~T~~v~~~-I~V~~~g--~~------- 170 (262)
T 3nol_A 105 KNGLGFVWNIRNLRQVRSFNYDGEGWGLT--HNDQYLIMSDGTPV--LRFLDPESLTPVRT-ITVTAHG--EE------- 170 (262)
T ss_dssp SSSEEEEEETTTCCEEEEEECSSCCCCEE--ECSSCEEECCSSSE--EEEECTTTCSEEEE-EECEETT--EE-------
T ss_pred eCCEEEEEECccCcEEEEEECCCCceEEe--cCCCEEEEECCCCe--EEEEcCCCCeEEEE-EEeccCC--cc-------
Confidence 58899999999999999887655333444 57788888876664 56666665555542 2221110 00
Q ss_pred CCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEE
Q 001287 176 HQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 255 (1107)
Q Consensus 176 ~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl 255 (1107)
...+..+.| . +|...+..+.+..|.+.|..+++++.......+.-. ... ......-...+
T Consensus 171 ~~~lNELe~--~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~-------~~~----------~~~~~~vlNGI 230 (262)
T 3nol_A 171 LPELNELEW--V-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAE-------AGP----------LPSPIDVLNGI 230 (262)
T ss_dssp CCCEEEEEE--E-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGG-------SCS----------CCSSCCCEEEE
T ss_pred ccccceeEE--E-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccc-------ccc----------ccCcCCceEEE
Confidence 023455666 2 566454555788999999999998765533111100 000 00113356789
Q ss_pred EeecCCCCEEEEEEc
Q 001287 256 CWASSSGSILAVGYI 270 (1107)
Q Consensus 256 ~w~spdg~~l~sg~~ 270 (1107)
+|. |+++.|++.+.
T Consensus 231 A~d-p~~~~lfVTGK 244 (262)
T 3nol_A 231 AWD-KEHHRLFVTGK 244 (262)
T ss_dssp EEE-TTTTEEEEEET
T ss_pred EEc-CCCCEEEEECC
Confidence 986 88887776654
No 242
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.95 E-value=0.0011 Score=75.40 Aligned_cols=166 Identities=14% Similarity=0.071 Sum_probs=107.6
Q ss_pred eEEEEEcCCCCEEEEEECC------CcEEEEeCCCcceeeeCC---CCCCE-EEEEEEeCCCEEEEEe------------
Q 001287 38 ASILAFDHIQRLLAIATLD------GRIKVIGGDGIEGLLISP---SQLPY-KNLEFLQNQGFLISIT------------ 95 (1107)
Q Consensus 38 i~~lafsp~~~~LA~Gs~d------g~I~iw~~~~~~~~~~~~---h~~~V-~~l~fs~d~~~L~S~s------------ 95 (1107)
..-+...|+| ++++...+ |.|.++|..+.+++-..+ +...+ ..+-|+|++..+++..
T Consensus 140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~ 218 (462)
T 2ece_A 140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLK 218 (462)
T ss_dssp EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCC
T ss_pred ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccc
Confidence 3456778999 66665555 789999998766664333 22222 2477899999888875
Q ss_pred -------CCCcEEEEEcCCCeeeeeeccC---CCeEEEEE--ecCCCEEEEEcC------CCcEEEEEeecCCCceeecc
Q 001287 96 -------NDNEIQVWSLESRSLACCLKWE---SNITAFSV--ISGSHFMYIGDE------NGLMSVIKYDADEGKLFQLP 157 (1107)
Q Consensus 96 -------~d~~I~vWDl~s~~~~~~~~~~---~~Vt~l~~--~~~~~~l~~g~~------dg~V~vw~~d~~~~~l~~~~ 157 (1107)
.+++|.+||+.+++++..+... .....+.| +|++++++++++ +++|.+|.++. +.+....
T Consensus 219 ~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~--g~~~~~~ 296 (462)
T 2ece_A 219 LEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED--GKWNAEK 296 (462)
T ss_dssp TTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET--TEEEEEE
T ss_pred hhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC--CceeEEE
Confidence 3688999999999888887653 23444545 999999999885 56888888874 4433211
Q ss_pred -eeecccccccccC-CCC--C-CCCCeEEEEcccCCCCCEEEEEEC-CCeEEEEEcc
Q 001287 158 -YNISADALSEKAG-FPL--L-SHQPVVGVLPHPNSSGNRVLIAYE-NALVILWDVS 208 (1107)
Q Consensus 158 -~~i~~~~~~~~~~-~~~--~-~~~~V~~v~f~P~~~~~~ll~~~~-dg~V~vwdl~ 208 (1107)
+.++.......+. .+. . ....+..|.++| ++++|.++.. .+.|.+||+.
T Consensus 297 vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~--DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 297 VIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL--DDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp EEEECCEECCSSCCGGGGGGTEECCCCCCEEECT--TSCEEEEEETTTTEEEEEECS
T ss_pred EEeCCCccccccccccccccccCCCceeEEEECC--CCCEEEEEeCCCCEEEEEEec
Confidence 1223211100000 000 0 013477888977 7887777665 6799999986
No 243
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.95 E-value=0.0016 Score=69.98 Aligned_cols=157 Identities=11% Similarity=0.008 Sum_probs=101.6
Q ss_pred CeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCcceee-eCCCCCCEEEEEEEeCCCEEEEEe-CCCcEEEEEcCCCeeeee
Q 001287 37 TASILAFDHIQRLLAIAT-LDGRIKVIGGDGIEGLL-ISPSQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLESRSLACC 113 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~Gs-~dg~I~iw~~~~~~~~~-~~~h~~~V~~l~fs~d~~~L~S~s-~d~~I~vWDl~s~~~~~~ 113 (1107)
.+..++++|+++.|.++. .++.|..++.++..... ....-.....++|.++++.|+.+. ..+.|.++|++.......
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 467899999776666555 46899999987654332 222224678999999767666655 467899999876533222
Q ss_pred eccC-CCeEEEEEecCCCEEEEEcCC---CcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCC
Q 001287 114 LKWE-SNITAFSVISGSHFMYIGDEN---GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1107)
Q Consensus 114 ~~~~-~~Vt~l~~~~~~~~l~~g~~d---g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~ 189 (1107)
.... .....+++++++.+|++++.. +.|++++++. ..... +.... .....++++.| +
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg---~~~~~---~~~~~-----------~~~P~gia~d~--~ 177 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG---TNRRI---LAQDN-----------LGLPNGLTFDA--F 177 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS---CCCEE---EECTT-----------CSCEEEEEEET--T
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC---CCcEE---EEECC-----------CCCCcEEEEcC--C
Confidence 2222 467899999988888877753 5565555542 21111 11000 14588999987 4
Q ss_pred CCEEEEEE-CCCeEEEEEccCCEE
Q 001287 190 GNRVLIAY-ENALVILWDVSEAQI 212 (1107)
Q Consensus 190 ~~~ll~~~-~dg~V~vwdl~~~~~ 212 (1107)
+.+|+++. ..+.|.++|+.+...
T Consensus 178 ~~~lyv~d~~~~~I~~~~~~g~~~ 201 (267)
T 1npe_A 178 SSQLCWVDAGTHRAECLNPAQPGR 201 (267)
T ss_dssp TTEEEEEETTTTEEEEEETTEEEE
T ss_pred CCEEEEEECCCCEEEEEecCCCce
Confidence 55565555 457899999886544
No 244
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=97.95 E-value=9.5e-06 Score=67.57 Aligned_cols=63 Identities=19% Similarity=0.455 Sum_probs=49.7
Q ss_pred CCCHHHHHHHhccCCChHHHHHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHHHHHHhhcccccc
Q 001287 1037 LRTREEIIAKYRKAEDASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRKWWK 1106 (1107)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~~~~~~~ 1106 (1107)
...+..|+.. -.++-..+..+=+++.||||||+.|.+||++|+..|..|..-|++|-++ -||+
T Consensus 7 ~d~l~~vq~e---l~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~----~ww~ 69 (74)
T 2nps_A 7 NDKIKHVQNQ---VDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQ----MWWR 69 (74)
T ss_dssp CSSSHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCC-
T ss_pred hhHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 3444455443 2234578899999999999999999999999999999999999888766 4664
No 245
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=97.94 E-value=9.4e-06 Score=70.49 Aligned_cols=48 Identities=27% Similarity=0.459 Sum_probs=44.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHHHHHHh
Q 001287 1052 DASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTM 1099 (1107)
Q Consensus 1052 ~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~ 1099 (1107)
++-..+..+-+|+.||||||+.|.+||++|+++|+.|...|++|-++|
T Consensus 16 evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkm 63 (91)
T 3hd7_A 16 EVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 63 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445789999999999999999999999999999999999999998875
No 246
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.94 E-value=0.00085 Score=75.57 Aligned_cols=75 Identities=7% Similarity=-0.150 Sum_probs=53.3
Q ss_pred EEEEEeCCCeEEEecc---------CceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEE
Q 001287 541 TLSFCFINSSLAVGNE---------FGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQF 611 (1107)
Q Consensus 541 ~l~fspd~~~Lasg~~---------dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~ 611 (1107)
.++|++|++.|.++.. ++.+.++|+.+.. .+..+.. ......|+|
T Consensus 268 ~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~-------------------------vv~~i~v-g~~p~gi~~ 321 (368)
T 1mda_H 268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ-------------------------TSGPISN-GHDSDAIIA 321 (368)
T ss_dssp CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC-------------------------EEECCEE-EEEECEEEE
T ss_pred eeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe-------------------------EEEEEEC-CCCcceEEE
Confidence 3789999998887643 2356699987752 2222222 225889999
Q ss_pred cCCCCE-EEEEe-CCCeEEEEEcCCCeEEEEe
Q 001287 612 TSSGAK-LAVGF-ECGRVAVLDMNLLSVLFFT 641 (1107)
Q Consensus 612 sp~~~~-la~Gs-~dg~V~iwd~~~~~~~~~~ 641 (1107)
+|||++ +++.. .++.|.++|+.+.+++-..
T Consensus 322 s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I 353 (368)
T 1mda_H 322 AQDGASDNYANSAGTEVLDIYDAASDQDQSSV 353 (368)
T ss_dssp CCSSSCEEEEEETTTTEEEEEESSSCEEEEEC
T ss_pred CCCCCEEEEEccCCCCeEEEEECCCCcEEEEE
Confidence 999974 55555 5899999999999998443
No 247
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.87 E-value=0.0037 Score=65.26 Aligned_cols=214 Identities=13% Similarity=0.121 Sum_probs=128.9
Q ss_pred ccccceeeeecCCCCCeE--EEEEcCCCCEEEEEECC--CcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEe-C
Q 001287 22 ADLNLRIAVHYGIPATAS--ILAFDHIQRLLAIATLD--GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT-N 96 (1107)
Q Consensus 22 ~~~~~~~~~~~G~~~~i~--~lafsp~~~~LA~Gs~d--g~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s-~ 96 (1107)
+.+..++...|.|+.... -|.|++ +.+..+.+.+ ..|+.+|....+++....-...+-.......+.+|...+ .
T Consensus 5 ~~~~~~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~ 83 (243)
T 3mbr_X 5 PTQGYRVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWR 83 (243)
T ss_dssp CBCCEEEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS
T ss_pred cccceEEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEee
Confidence 456678888888887755 689997 5555555554 489999998777664333223332222333345555554 5
Q ss_pred CCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCC
Q 001287 97 DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSH 176 (1107)
Q Consensus 97 d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~ 176 (1107)
++.+.++|..+.+++..+.....-..++ +++..|++++.++.| +-+|..+.+.... ..+..+. + ..
T Consensus 84 ~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l--~~iDp~t~~~~~~-I~V~~~g--~-------~~ 149 (243)
T 3mbr_X 84 NHEGFVYDLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVI--RKLDPDTLQQVGS-IKVTAGG--R-------PL 149 (243)
T ss_dssp SSEEEEEETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEE--EEECTTTCCEEEE-EECEETT--E-------EC
T ss_pred CCEEEEEECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeE--EEEeCCCCeEEEE-EEEccCC--c-------cc
Confidence 8899999999999999887665444554 567888888877755 5556655555432 2222111 0 01
Q ss_pred CCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEE
Q 001287 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALC 256 (1107)
Q Consensus 177 ~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~ 256 (1107)
..+..+.|. +|...+-...+..|.+.|..+++++.......+.-. .... ......-...++
T Consensus 150 ~~lNeLe~~---~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~-------~~~~---------~~~~~~vlNGIA 210 (243)
T 3mbr_X 150 DNLNELEWV---NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPD-------ADAL---------TDSTNDVLNGIA 210 (243)
T ss_dssp CCEEEEEEE---TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTT-------TTSC---------CCTTSSCEEEEE
T ss_pred ccceeeEEe---CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccc-------cccc---------cCCcCCceEEEE
Confidence 335566662 565444444688999999999998765533111100 0000 001134567899
Q ss_pred eecCCCCEEEEEEc
Q 001287 257 WASSSGSILAVGYI 270 (1107)
Q Consensus 257 w~spdg~~l~sg~~ 270 (1107)
|. |+++.|++.+.
T Consensus 211 ~d-~~~~~lfVTGK 223 (243)
T 3mbr_X 211 FD-AEHDRLFVTGK 223 (243)
T ss_dssp EE-TTTTEEEEEET
T ss_pred Ec-CCCCEEEEECC
Confidence 87 87776665543
No 248
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.86 E-value=0.00097 Score=73.82 Aligned_cols=100 Identities=8% Similarity=0.070 Sum_probs=56.2
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeeeccCC-CeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeeccccccc
Q 001287 89 GFLISITNDNEIQVWSLESRSLACCLKWES-NITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1107)
Q Consensus 89 ~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~-~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~ 167 (1107)
+.|..++.++.|..|| .+++.+....... .+.++.+.+++ .+++++.+ ++. ++. +++.... +....
T Consensus 31 g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~--l~~--~d~-~g~~~~~-~~~~~----- 97 (330)
T 3hxj_A 31 GTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDG-TIYFGSDK--VYA--INP-DGTEKWR-FDTKK----- 97 (330)
T ss_dssp SCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTT-EECCSSCE--EEE--ECC-CGGGGGG-SCC-------
T ss_pred CeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCC-cEEEecCc--EEE--ECC-CCcEEEE-EECCC-----
Confidence 4677777788999999 8887766554333 34556665554 46666555 444 443 3433321 11111
Q ss_pred ccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEE
Q 001287 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV 215 (1107)
Q Consensus 168 ~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~ 215 (1107)
......... ++ .+.+++.++.|..+|.. ++..+.
T Consensus 98 ---------~~~~~~~~~---~~-~l~v~t~~~~l~~~d~~-g~~~~~ 131 (330)
T 3hxj_A 98 ---------AIVSDFTIF---ED-ILYVTSMDGHLYAINTD-GTEKWR 131 (330)
T ss_dssp ------------CCEEEE---TT-EEEEECTTSEEEEECTT-SCEEEE
T ss_pred ---------CcccCceEE---CC-EEEEEecCCEEEEEcCC-CCEEEE
Confidence 111111111 33 48888889999999988 655443
No 249
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.84 E-value=2.9e-06 Score=96.68 Aligned_cols=145 Identities=11% Similarity=0.056 Sum_probs=76.8
Q ss_pred CCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCcc
Q 001287 494 VDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKN 573 (1107)
Q Consensus 494 ~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~ 573 (1107)
++..+++|+.||.|+.||..++.+...+.. ..+.+..+..++..+++++.||.|+.|+..+...
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-------------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~--- 71 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-------------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG--- 71 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-------------CCSCCCC-----CCEEECTTTCCEEEC-----CC---
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-------------CCceecceEcCCCEEEEeCCCCEEEEEECCCCce---
Confidence 455888899999999999999986633221 2344444567788888889999999999865421
Q ss_pred ceeeccCcCcceecccCCcceeEEEEeecC-cCEE-EEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCce
Q 001287 574 FLFVLETKSEVHALPEGKISLCRAVFSLVN-SPVR-ALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPI 651 (1107)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~-~~Vt-~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V 651 (1107)
+..+..+. ..+. +..+. ++..|++|+.||.|+.||..+++.++.... +. .
T Consensus 72 ----------------------~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~---~~-~- 123 (369)
T 2hz6_A 72 ----------------------LTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSS---AF-A- 123 (369)
T ss_dssp ----------------------SEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC------------------
T ss_pred ----------------------eeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecC---CC-c-
Confidence 11111110 0010 00111 345678899999999999999988854332 21 1
Q ss_pred EEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcceec
Q 001287 652 ISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMIS 706 (1107)
Q Consensus 652 ~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~i~ 706 (1107)
..++ |.+..|++++.|+.|.+||..+|+.+-
T Consensus 124 --~~~~----------------------p~~~~v~~~~~dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 124 --DSLS----------------------PSTSLLYLGRTEYTITMYDTKTRELRW 154 (369)
T ss_dssp ---------------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred --cccc----------------------ccCCEEEEEecCCEEEEEECCCCCEEE
Confidence 1122 246789999999999999999998763
No 250
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.80 E-value=0.14 Score=61.99 Aligned_cols=160 Identities=15% Similarity=0.090 Sum_probs=99.1
Q ss_pred CCeEEEEEcCCCCEEEEEEC-CCcEEEEeCCCcc--eeeeCCCCCCEEEEEEEeCCCEEEEEe-CCCcEEEEEcCCCeee
Q 001287 36 ATASILAFDHIQRLLAIATL-DGRIKVIGGDGIE--GLLISPSQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLESRSLA 111 (1107)
Q Consensus 36 ~~i~~lafsp~~~~LA~Gs~-dg~I~iw~~~~~~--~~~~~~h~~~V~~l~fs~d~~~L~S~s-~d~~I~vWDl~s~~~~ 111 (1107)
..+..++|++.+..|..... .++|+.++.++.. .......-.....|++.+.++.|+.+. ..+.|.+-|++.....
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~ 119 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 119 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence 35778999998887777654 5889989887652 222333234688999999667666665 4678999999876443
Q ss_pred eee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCC
Q 001287 112 CCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1107)
Q Consensus 112 ~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~ 190 (1107)
... ..-.....++++|.+.+|+..+....-+|+..+.+....... +... ...+.+|++.|. +
T Consensus 120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l---~~~~------------~~~P~Glald~~--~ 182 (619)
T 3s94_A 120 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII---INSE------------IYWPNGLTLDYE--E 182 (619)
T ss_dssp EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE---ECSS------------CSSEEEEEEETT--T
T ss_pred EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEE---EeCC------------CCCCcEEEEEcc--C
Confidence 333 233456789999998888888743222455554332222111 1111 156899999773 4
Q ss_pred CEEEEEE-CCCeEEEEEccCCEE
Q 001287 191 NRVLIAY-ENALVILWDVSEAQI 212 (1107)
Q Consensus 191 ~~ll~~~-~dg~V~vwdl~~~~~ 212 (1107)
.+|+.+. ..+.|..+|+.....
T Consensus 183 ~~LY~aD~~~~~I~~~~~dG~~~ 205 (619)
T 3s94_A 183 QKLYWADAKLNFIHKSNLDGTNR 205 (619)
T ss_dssp TEEEEEETTTCCEEEESSSCCEE
T ss_pred CEEEEEeCCCCeEEEecCCCCcc
Confidence 4566554 455777788776543
No 251
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=97.76 E-value=3.8e-05 Score=61.20 Aligned_cols=47 Identities=26% Similarity=0.356 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHHHHHHh
Q 001287 1053 ASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTM 1099 (1107)
Q Consensus 1053 ~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~ 1099 (1107)
+-..+..+=+++.||||||+.|.+||++|+..|..|..-|++|-++|
T Consensus 14 vk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~m 60 (61)
T 3b5n_A 14 TVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAM 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34788889999999999999999999999999999999999998886
No 252
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=97.73 E-value=1.5e-06 Score=79.31 Aligned_cols=48 Identities=27% Similarity=0.459 Sum_probs=44.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHHHHHHh
Q 001287 1052 DASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTM 1099 (1107)
Q Consensus 1052 ~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~ 1099 (1107)
++-..+..+-+|+.||||||+.|++||++|+.+|+.|.+.|++|.++|
T Consensus 44 eVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkm 91 (119)
T 2kog_A 44 EVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 91 (119)
T ss_dssp HHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999999988775
No 253
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.73 E-value=0.011 Score=65.21 Aligned_cols=155 Identities=14% Similarity=0.086 Sum_probs=96.7
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeC-CC-------------------CCCEEEEEEEeCCCEEEEEeC
Q 001287 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS-PS-------------------QLPYKNLEFLQNQGFLISITN 96 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~-~h-------------------~~~V~~l~fs~d~~~L~S~s~ 96 (1107)
.+..++++++++++.++..++.|..|+..+....... .. ......|++.++.+.|+.+..
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~ 99 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC 99 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence 4667899999998889999999999988664433211 00 125788999974456666666
Q ss_pred CCcEEEEEcCCCeeeeeec-----cCCCeEEEEEec-CCCEEEEEcCC---------------CcEEEEEeecCCCceee
Q 001287 97 DNEIQVWSLESRSLACCLK-----WESNITAFSVIS-GSHFMYIGDEN---------------GLMSVIKYDADEGKLFQ 155 (1107)
Q Consensus 97 d~~I~vWDl~s~~~~~~~~-----~~~~Vt~l~~~~-~~~~l~~g~~d---------------g~V~vw~~d~~~~~l~~ 155 (1107)
.+.|.++|..++....... .......+++++ ++++.++-... ..-.|+.++...+.+..
T Consensus 100 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 179 (322)
T 2fp8_A 100 YYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTL 179 (322)
T ss_dssp TTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEE
T ss_pred CCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEE
Confidence 6668999988764322211 113467899999 77644433221 11245556654444432
Q ss_pred cceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEE-ECCCeEEEEEccC
Q 001287 156 LPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIA-YENALVILWDVSE 209 (1107)
Q Consensus 156 ~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~-~~dg~V~vwdl~~ 209 (1107)
. ... . .....|+++| +++.|+++ +.++.|.+|++..
T Consensus 180 ~---~~~-~------------~~p~gia~~~--dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 180 L---LKE-L------------HVPGGAEVSA--DSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp E---EEE-E------------SCCCEEEECT--TSSEEEEEEGGGTEEEEEESSS
T ss_pred e---ccC-C------------ccCcceEECC--CCCEEEEEeCCCCeEEEEECCC
Confidence 1 110 0 3356789977 67766666 4568889998875
No 254
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.73 E-value=0.0074 Score=74.10 Aligned_cols=112 Identities=13% Similarity=0.143 Sum_probs=67.9
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeccCCCe------------EEEEEecCCCEEEEEcCCCcEEEEEeecCCCceee
Q 001287 88 QGFLISITNDNEIQVWSLESRSLACCLKWESNI------------TAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQ 155 (1107)
Q Consensus 88 ~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~V------------t~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~ 155 (1107)
+..|+.++.++.|.-+|..+++.+..+...... ..+++ .+..+++++.+|.|+. +|..+|++.-
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~a--lD~~tG~~~W 141 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIA--LDAKTGKAIW 141 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEE--EETTTCCEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEE--EECCCCCEee
Confidence 467888888999999999999988776433210 11222 3568899999996654 5555677663
Q ss_pred cceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEEC------CCeEEEEEccCCEEEEEeC
Q 001287 156 LPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE------NALVILWDVSEAQIIFVGG 217 (1107)
Q Consensus 156 ~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~------dg~V~vwdl~~~~~~~~~g 217 (1107)
++..... .....+...|.-.+.+++++.. +|.|..||..+++.++.+.
T Consensus 142 ---~~~~~~~-----------~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 142 ---SQQTTDP-----------AKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp ---EEECSCT-----------TSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred ---eeccCCC-----------CCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 2322110 0000011111111234666654 5899999999999988653
No 255
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.71 E-value=0.0053 Score=75.39 Aligned_cols=60 Identities=7% Similarity=-0.054 Sum_probs=43.5
Q ss_pred CCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCc
Q 001287 623 ECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSE 702 (1107)
Q Consensus 623 ~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g 702 (1107)
.+|.|.-||+.+++++++.... .++....+. ..+.++++++.|+.|++||..+|
T Consensus 436 ~~g~l~A~D~~tG~~~W~~~~~----~~~~~~~~~----------------------t~gg~vf~g~~dg~l~a~d~~tG 489 (668)
T 1kv9_A 436 VSGALLAWDPVKQKAAWKVPYP----THWNGGTLS----------------------TAGNLVFQGTAAGQMHAYSADKG 489 (668)
T ss_dssp CEEEEEEEETTTTEEEEEEEES----SSCCCCEEE----------------------ETTTEEEEECTTSEEEEEETTTC
T ss_pred ccceEEEEeCCCCcEEEEccCC----CCCcCceeE----------------------eCCCEEEEECCcccchhhhhhcC
Confidence 3488999999999998876541 112111222 12678999999999999999999
Q ss_pred ceecCC
Q 001287 703 NMISSS 708 (1107)
Q Consensus 703 ~~i~~~ 708 (1107)
+.+-+.
T Consensus 490 ~~l~~~ 495 (668)
T 1kv9_A 490 EALWQF 495 (668)
T ss_dssp CEEEEE
T ss_pred hhheEe
Confidence 987554
No 256
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.69 E-value=0.011 Score=62.35 Aligned_cols=171 Identities=18% Similarity=0.148 Sum_probs=113.7
Q ss_pred ecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEeCCCcceeee-CCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCC
Q 001287 31 HYGIPATASILAFDHIQR-LLAIATLDGRIKVIGGDGIEGLLI-SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR 108 (1107)
Q Consensus 31 ~~G~~~~i~~lafsp~~~-~LA~Gs~dg~I~iw~~~~~~~~~~-~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~ 108 (1107)
.-|+...++.++|+|++. +.|+...++.|..++..+...... .........|++.+++.++++.-.++.+.++++...
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~ 101 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPN 101 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTT
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence 358888999999999765 556678889999999874432222 233357889999998877676556788999988665
Q ss_pred ee---eeeec-------cCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccc-cccccCCCCCCCC
Q 001287 109 SL---ACCLK-------WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADA-LSEKAGFPLLSHQ 177 (1107)
Q Consensus 109 ~~---~~~~~-------~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~-~~~~~~~~~~~~~ 177 (1107)
.. +.... .......+++++.++.|+++.+.....||.++...... ...+..+. +.. .....
T Consensus 102 ~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~---~l~i~~~~~~~~-----~~~~~ 173 (255)
T 3qqz_A 102 SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSN---ELHISKDKALQR-----QFTLD 173 (255)
T ss_dssp CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSS---CCEEEECHHHHH-----TCCSS
T ss_pred CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCC---ceeeecchhhcc-----ccccC
Confidence 42 22221 12346899999999999999888777888887210000 01121110 000 01123
Q ss_pred CeEEEEcccCCCCCEEEEEECCCeEEEEEccCC
Q 001287 178 PVVGVLPHPNSSGNRVLIAYENALVILWDVSEA 210 (1107)
Q Consensus 178 ~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~ 210 (1107)
.+.+++++|. .+.+++....+..+.++|....
T Consensus 174 d~S~l~~dp~-tg~lliLS~~s~~L~~~d~~g~ 205 (255)
T 3qqz_A 174 DVSGAEFNQQ-KNTLLVLSHESRALQEVTLVGE 205 (255)
T ss_dssp CCCEEEEETT-TTEEEEEETTTTEEEEECTTCC
T ss_pred CceeEEEcCC-CCeEEEEECCCCeEEEEcCCCC
Confidence 4789999997 5666666777788999998765
No 257
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.68 E-value=0.022 Score=68.49 Aligned_cols=113 Identities=14% Similarity=0.129 Sum_probs=68.9
Q ss_pred CCEEEEEeC-CCcEEEEEc-CCCeeeeeeccCCC------------eEEEEEecCCCE----EEEEcCCCcEEEEEeecC
Q 001287 88 QGFLISITN-DNEIQVWSL-ESRSLACCLKWESN------------ITAFSVISGSHF----MYIGDENGLMSVIKYDAD 149 (1107)
Q Consensus 88 ~~~L~S~s~-d~~I~vWDl-~s~~~~~~~~~~~~------------Vt~l~~~~~~~~----l~~g~~dg~V~vw~~d~~ 149 (1107)
+..|+.++. ++.|.-+|. .+++.+........ ...+++.|.+.. +++++.++.+ +-+|..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l--~AlDa~ 139 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNV--AALNAE 139 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEE--EEEETT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEE--EEEECC
Confidence 467777777 889999999 89998877644321 112455434444 8999999955 556666
Q ss_pred CCceeecceeecccccccccCCCCCCCCCeEEEEcccC-CCCCEEEEEEC------CCeEEEEEccCCEEEEEeC
Q 001287 150 EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN-SSGNRVLIAYE------NALVILWDVSEAQIIFVGG 217 (1107)
Q Consensus 150 ~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~-~~~~~ll~~~~------dg~V~vwdl~~~~~~~~~g 217 (1107)
+|++.-. +.+..+. .. ..+.-.|. .++ +++++.. +|.|+.+|..+++.++.+.
T Consensus 140 TG~~~W~-~~~~~~~--~~-----------~~~~ssP~v~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 140 TGETVWK-VENSDIK--VG-----------STLTIAPYVVKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp TCCEEEE-EECCCGG--GT-----------CBCCSCCEEETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CCCEEEe-ecCCCCC--cc-----------ceeecCCEEECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence 6777632 2222111 00 00011111 133 4666663 8999999999999987654
No 258
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.64 E-value=0.001 Score=78.18 Aligned_cols=216 Identities=12% Similarity=0.070 Sum_probs=127.9
Q ss_pred CCCCEEEEEECC-CcEEEEeCCCcceee--eCCCCCCEEEEEE-E-eCCCEEEEEe------------------CCCcEE
Q 001287 45 HIQRLLAIATLD-GRIKVIGGDGIEGLL--ISPSQLPYKNLEF-L-QNQGFLISIT------------------NDNEIQ 101 (1107)
Q Consensus 45 p~~~~LA~Gs~d-g~I~iw~~~~~~~~~--~~~h~~~V~~l~f-s-~d~~~L~S~s------------------~d~~I~ 101 (1107)
+||++|.+...+ ++|.+.|++..++.- ..+.......++| + |++++++..+ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 489999887765 679999998876543 4455556889998 5 9999998885 245799
Q ss_pred EEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCC---------------cEEEEEeecC-----CCceee--ccee
Q 001287 102 VWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENG---------------LMSVIKYDAD-----EGKLFQ--LPYN 159 (1107)
Q Consensus 102 vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg---------------~V~vw~~d~~-----~~~l~~--~~~~ 159 (1107)
+.|.++.+++..+.-.+....++++++++++++.+.+. .|.|.++... .|+... .--.
T Consensus 179 vID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 99999999988886655667788999999999998654 1223222110 000000 0000
Q ss_pred eccccc-ccccCCCCCCCCCeEEEEcccCCCCCEEEEEE-CCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCc
Q 001287 160 ISADAL-SEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDST 237 (1107)
Q Consensus 160 i~~~~~-~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~-~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 237 (1107)
+..... .+.+-..-+-.....++.++| +|++++++. .+..|.++|+.+.+.. ..+. +.....+.
T Consensus 259 ID~~~~~~~~~~~~Ipvg~~PhGv~~sP--DGk~v~V~~~~s~~VsVid~~~~~~~-~~~~--l~~~~~v~--------- 324 (595)
T 1fwx_A 259 VDGRKEASSLFTRYIPIANNPHGCNMAP--DKKHLCVAGKLSPTVTVLDVTRFDAV-FYEN--ADPRSAVV--------- 324 (595)
T ss_dssp EECSGGGCCSSEEEEEEESSCCCEEECT--TSSEEEEECTTSSBEEEEEGGGHHHH-HHSC--CCGGGGEE---------
T ss_pred EeCcccCCceeEEEEecCCCceEEEEcC--CCCEEEEeCCCCCeEEEEECcccccc-cccc--cCcccceE---------
Confidence 000000 000000000013467889988 788776655 5679999999865310 0000 00000000
Q ss_pred cccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCC
Q 001287 238 FLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1107)
Q Consensus 238 ~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~ 281 (1107)
.+..-......++|. ++|...++...|+.|.+||+..
T Consensus 325 ------~~v~vG~gP~h~aF~-~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 325 ------AEPELGLGPLHTAFD-GRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp ------ECCBCCSCEEEEEEC-TTSEEEEEETTTTEEEEEEHHH
T ss_pred ------EEcCCCCCcceEEEC-CCCeEEEEEecCCcEEEEEhhH
Confidence 000002234557764 9994445666899999999865
No 259
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.63 E-value=0.0027 Score=66.82 Aligned_cols=170 Identities=10% Similarity=0.058 Sum_probs=109.1
Q ss_pred eeeeecCCCCCe--EEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCE--EEEEEEeCCCEEEEE-eCCCcEE
Q 001287 27 RIAVHYGIPATA--SILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPY--KNLEFLQNQGFLISI-TNDNEIQ 101 (1107)
Q Consensus 27 ~~~~~~G~~~~i--~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V--~~l~fs~d~~~L~S~-s~d~~I~ 101 (1107)
++...|.|+... --|.|+. +.+..+.+.+|.|+++|..+.+++... -...+ ..+.+. +.+|..+ -.++.+.
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~ 119 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLF 119 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEE
T ss_pred EEEEEEcCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEE
Confidence 566677777666 5688884 566666677789999999766554222 11222 335554 3444444 4588999
Q ss_pred EEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEE
Q 001287 102 VWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVG 181 (1107)
Q Consensus 102 vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~ 181 (1107)
++|..+.+++..+.....-..++ ++++.|++++.++.| +.+|..+.+.... ..+..+. + ....+..
T Consensus 120 V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l--~~iDp~T~~v~~~-I~V~~~g--~-------~v~~lNe 185 (268)
T 3nok_A 120 TWSGMPPQRERTTRYSGEGWGLC--YWNGKLVRSDGGTML--TFHEPDGFALVGA-VQVKLRG--Q-------PVELINE 185 (268)
T ss_dssp EEETTTTEEEEEEECSSCCCCEE--EETTEEEEECSSSEE--EEECTTTCCEEEE-EECEETT--E-------ECCCEEE
T ss_pred EEECCcCcEEEEEeCCCceeEEe--cCCCEEEEECCCCEE--EEEcCCCCeEEEE-EEeCCCC--c-------ccccccc
Confidence 99999999999887665444555 567889998877755 5566655555542 2222111 0 0134566
Q ss_pred EEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeC
Q 001287 182 VLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGG 217 (1107)
Q Consensus 182 v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g 217 (1107)
+.|. +|...+..+.+..|.+.|..+++++....
T Consensus 186 Le~~---dG~lyanvw~s~~I~vIDp~TG~V~~~Id 218 (268)
T 3nok_A 186 LECA---NGVIYANIWHSSDVLEIDPATGTVVGVID 218 (268)
T ss_dssp EEEE---TTEEEEEETTCSEEEEECTTTCBEEEEEE
T ss_pred cEEe---CCEEEEEECCCCeEEEEeCCCCcEEEEEE
Confidence 7773 56544445568899999999999876553
No 260
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.63 E-value=0.09 Score=63.12 Aligned_cols=59 Identities=12% Similarity=0.091 Sum_probs=41.5
Q ss_pred CCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcc
Q 001287 624 CGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSEN 703 (1107)
Q Consensus 624 dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~ 703 (1107)
+|.|.-||+.+++++++..... ++..-... ..+.++|+++.|+.|++||.++|+
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~----~~~~g~~~----------------------tagglvf~g~~dg~l~A~D~~tG~ 518 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL----PLWAGVLA----------------------TAGNLVFTGTGDGYFKAFDAKSGK 518 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS----CCCSCCEE----------------------ETTTEEEEECTTSEEEEEETTTCC
T ss_pred cceEEEEECCCCCEEEEecCCC----CCcccceE----------------------eCCCEEEEECCCCcEEEEECCCCC
Confidence 6889999999999887765411 11000000 126678899999999999999999
Q ss_pred eecCC
Q 001287 704 MISSS 708 (1107)
Q Consensus 704 ~i~~~ 708 (1107)
.+-+.
T Consensus 519 ~lW~~ 523 (582)
T 1flg_A 519 ELWKF 523 (582)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88554
No 261
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.62 E-value=0.25 Score=59.75 Aligned_cols=157 Identities=15% Similarity=0.028 Sum_probs=100.4
Q ss_pred CCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCcceeeeCC-CCCCEEEEEEEeCCCEEEEEeC-CCcEEEEEcCCCeeee
Q 001287 36 ATASILAFDHIQRLLAIAT-LDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITN-DNEIQVWSLESRSLAC 112 (1107)
Q Consensus 36 ~~i~~lafsp~~~~LA~Gs-~dg~I~iw~~~~~~~~~~~~-h~~~V~~l~fs~d~~~L~S~s~-d~~I~vWDl~s~~~~~ 112 (1107)
..+..++|++....|.... .++.|+.++.++........ .-.....|++.+.++.|+-+.. .+.|.+-+++......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 3578999999777666554 56899999887654332222 2245678999887676766554 6789999997654322
Q ss_pred ee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCC
Q 001287 113 CL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1107)
Q Consensus 113 ~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~ 191 (1107)
.. ..-.....++++|...+|+..+....-+|+..+.+....... +. . ...+.+|++.+ ++.
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l---~~-~------------~~~P~GlalD~--~~~ 178 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL---VP-N------------VGRANGLTIDY--AKR 178 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE---EC-S------------CSSEEEEEEET--TTT
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEE---EC-C------------CCCcceEEEcc--ccC
Confidence 22 223467899999988888888743222455554432222211 11 1 15689999977 445
Q ss_pred EEEEEEC-CCeEEEEEccCC
Q 001287 192 RVLIAYE-NALVILWDVSEA 210 (1107)
Q Consensus 192 ~ll~~~~-dg~V~vwdl~~~ 210 (1107)
+|..+.. .+.|..+|+...
T Consensus 179 ~LY~aD~~~~~I~~~d~dG~ 198 (628)
T 4a0p_A 179 RLYWTDLDTNLIESSNMLGL 198 (628)
T ss_dssp EEEEEETTTTEEEEEETTSC
T ss_pred EEEEEECCCCEEEEEcCCCC
Confidence 5666654 568888888764
No 262
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.59 E-value=0.021 Score=68.60 Aligned_cols=112 Identities=13% Similarity=0.173 Sum_probs=67.7
Q ss_pred CCEEEEEeC-CCcEEEEEc-CCCeeeeeeccCCC--e----------EEEEEecCCCEEEEEcCCCcEEEEEeecCCCce
Q 001287 88 QGFLISITN-DNEIQVWSL-ESRSLACCLKWESN--I----------TAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 153 (1107)
Q Consensus 88 ~~~L~S~s~-d~~I~vWDl-~s~~~~~~~~~~~~--V----------t~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l 153 (1107)
+..|+.++. ++.|.-+|. .+++.+........ + ...++ .+..+++++.++.++ -+|..+|++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~--alD~~tG~~ 137 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLL--ALDAKTGKI 137 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEE--EEETTTCCE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEE--EEECCCCCE
Confidence 467777777 889999999 89988877643321 0 11222 366889999999664 455656776
Q ss_pred eecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEEC------CCeEEEEEccCCEEEEEeC
Q 001287 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE------NALVILWDVSEAQIIFVGG 217 (1107)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~------dg~V~vwdl~~~~~~~~~g 217 (1107)
.-. +.+..+.. . ..+...|.-.+.+++++.. +|.|..+|..+++.++.+.
T Consensus 138 ~W~-~~~~~~~~--~-----------~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 138 NWE-VEVCDPKV--G-----------STLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp EEE-EECCCGGG--T-----------CBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred EEE-ecCCCCCc--c-----------ceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 632 22222110 0 0011111111234777765 7999999999999887653
No 263
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.55 E-value=0.0064 Score=69.02 Aligned_cols=205 Identities=11% Similarity=0.068 Sum_probs=123.3
Q ss_pred CCCCEEEE-EECCCcEEEEeCCCc----cee-eeC------C-CCCCEEEEEEEeCCCEEEEEeCC------CcEEEEEc
Q 001287 45 HIQRLLAI-ATLDGRIKVIGGDGI----EGL-LIS------P-SQLPYKNLEFLQNQGFLISITND------NEIQVWSL 105 (1107)
Q Consensus 45 p~~~~LA~-Gs~dg~I~iw~~~~~----~~~-~~~------~-h~~~V~~l~fs~d~~~L~S~s~d------~~I~vWDl 105 (1107)
+++++|.+ |..+++|+|+|.... ++. ..- . ....-..+..+|+| ..+++..+ +.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 78887766 556699999998432 221 110 0 11123456778998 66676655 78999999
Q ss_pred CCCeeeeeeccC----CCeEEEEEecCCCEEEEEc-------------------CCCcEEEEEeecCCCceeecceeecc
Q 001287 106 ESRSLACCLKWE----SNITAFSVISGSHFMYIGD-------------------ENGLMSVIKYDADEGKLFQLPYNISA 162 (1107)
Q Consensus 106 ~s~~~~~~~~~~----~~Vt~l~~~~~~~~l~~g~-------------------~dg~V~vw~~d~~~~~l~~~~~~i~~ 162 (1107)
.+.+++..+... .--..+-|+|++++|++.. ....|.+|+++. +++.+. +.+..
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~--~k~~~t-I~vg~ 248 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK--RKRIHS-LTLGE 248 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT--TEEEEE-EESCT
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC--CcEeeE-EecCC
Confidence 999999887432 2233477899999999885 367899999875 455543 23321
Q ss_pred cccccccCCCCCCCCCeEEEEc--ccCCCCCEEEEEE------CCCeEEEEEccCCEEEEEeCCccccccccccCCCCCC
Q 001287 163 DALSEKAGFPLLSHQPVVGVLP--HPNSSGNRVLIAY------ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEG 234 (1107)
Q Consensus 163 ~~~~~~~~~~~~~~~~V~~v~f--~P~~~~~~ll~~~------~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~ 234 (1107)
.. .....|.| +| +++++++++ .++.|.+|..+.+........ +.... .+ .+.
T Consensus 249 ~g------------~~P~~i~f~~~P--dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vI-di~~~-~v----~~~ 308 (462)
T 2ece_A 249 EN------------RMALELRPLHDP--TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVI-EIPAE-PL----EGN 308 (462)
T ss_dssp TE------------EEEEEEEECSST--TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEE-EECCE-EC----CSS
T ss_pred CC------------CccceeEeeECC--CCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEE-eCCCc-cc----ccc
Confidence 11 23455555 77 677777777 466888888776543221100 00000 00 000
Q ss_pred C----CccccCCCCCCCCCCceeEEEeecCCCCEEEEEEc-CCcEEEEeCCC
Q 001287 235 D----STFLEGISEHQPEEKEISALCWASSSGSILAVGYI-DGDILLWNTST 281 (1107)
Q Consensus 235 ~----~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~-dG~I~lWd~~~ 281 (1107)
. ...+. .....+.+. .|+||++|+++.. .+.|.++|+.+
T Consensus 309 lp~~~~~f~~-------~~~~pa~I~-lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 309 LPEILKPFKA-------VPPLVTDID-ISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp CCGGGGGGTE-------ECCCCCCEE-ECTTSCEEEEEETTTTEEEEEECSS
T ss_pred cccccccccc-------CCCceeEEE-ECCCCCEEEEEeCCCCEEEEEEecC
Confidence 0 00000 012345566 4699999988875 68999999863
No 264
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.46 E-value=0.0038 Score=73.39 Aligned_cols=162 Identities=9% Similarity=0.001 Sum_probs=111.5
Q ss_pred CCeEEEEE-c-CCCCEEEEEEC------------------CCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEe
Q 001287 36 ATASILAF-D-HIQRLLAIATL------------------DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT 95 (1107)
Q Consensus 36 ~~i~~laf-s-p~~~~LA~Gs~------------------dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s 95 (1107)
..+..+++ + |+++++.+++. ++.+-++|.+..++...-.=.+.-..++++|+|+++++.+
T Consensus 134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~ 213 (595)
T 1fwx_A 134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTS 213 (595)
T ss_dssp CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEE
T ss_pred CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEe
Confidence 56788998 5 99999999862 3578889988776653322112346778999999999988
Q ss_pred CCC--------------------------------------cEEEEEcCC--Cee-eeeeccCCCeEEEEEecCCCEEEE
Q 001287 96 NDN--------------------------------------EIQVWSLES--RSL-ACCLKWESNITAFSVISGSHFMYI 134 (1107)
Q Consensus 96 ~d~--------------------------------------~I~vWDl~s--~~~-~~~~~~~~~Vt~l~~~~~~~~l~~ 134 (1107)
.+. .|.|.|..+ +.. +..+.......++.++|+++++++
T Consensus 214 ~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V 293 (595)
T 1fwx_A 214 YNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCV 293 (595)
T ss_dssp SCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEE
T ss_pred cCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEE
Confidence 543 477888887 444 555555567788999999999888
Q ss_pred Ec-CCCcEEEEEeecC----CCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccC
Q 001287 135 GD-ENGLMSVIKYDAD----EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE 209 (1107)
Q Consensus 135 g~-~dg~V~vw~~d~~----~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~ 209 (1107)
++ .+.+|.+++++.. ++++... ..+.. ...-......++|+| +|...++.+-|+.|.+||+..
T Consensus 294 ~~~~s~~VsVid~~~~~~~~~~~l~~~-~~v~~---------~v~vG~gP~h~aF~~--dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 294 AGKLSPTVTVLDVTRFDAVFYENADPR-SAVVA---------EPELGLGPLHTAFDG--RGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp ECTTSSBEEEEEGGGHHHHHHSCCCGG-GGEEE---------CCBCCSCEEEEEECT--TSEEEEEETTTTEEEEEEHHH
T ss_pred eCCCCCeEEEEECcccccccccccCcc-cceEE---------EcCCCCCcceEEECC--CCeEEEEEecCCcEEEEEhhH
Confidence 77 5788999888742 1111100 00000 000114589999988 575566778899999999987
No 265
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.45 E-value=0.052 Score=65.09 Aligned_cols=60 Identities=8% Similarity=0.018 Sum_probs=40.9
Q ss_pred CCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCc
Q 001287 623 ECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSE 702 (1107)
Q Consensus 623 ~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g 702 (1107)
.+|.|..||+.+++++++...- .++.+..+. ..+.++++++.||.|++||..+|
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~----~~~~~~~~~----------------------t~gg~v~~g~~dg~l~a~D~~tG 495 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEK----FAAWGGTLY----------------------TKGGLVWYATLDGYLKALDNKDG 495 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEES----SCCCSBCEE----------------------ETTTEEEEECTTSEEEEEETTTC
T ss_pred CCCeEEEEECCCCCEEEEecCC----CCccceeEE----------------------ECCCEEEEEcCCCeEEEEECCCC
Confidence 3578889999888888765431 111111111 12567888999999999999999
Q ss_pred ceecCC
Q 001287 703 NMISSS 708 (1107)
Q Consensus 703 ~~i~~~ 708 (1107)
+++-+.
T Consensus 496 ~~lw~~ 501 (571)
T 2ad6_A 496 KELWNF 501 (571)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 987544
No 266
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=97.41 E-value=0.00014 Score=58.69 Aligned_cols=57 Identities=14% Similarity=0.363 Sum_probs=45.6
Q ss_pred CCCHHHHHHHhccCCChHHHHHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHHHH
Q 001287 1037 LRTREEIIAKYRKAEDASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELV 1096 (1107)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~ 1096 (1107)
...+..|+.. -.++-..+..+=+++.||||||+.|.+||++|+..|..|..-|++|-
T Consensus 8 ~d~l~~vq~~---l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~l~ 64 (65)
T 1gl2_A 8 NDRVRNLQSE---VEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVA 64 (65)
T ss_dssp --CHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455556655 33446889999999999999999999999999999999999998874
No 267
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.33 E-value=0.044 Score=57.11 Aligned_cols=167 Identities=11% Similarity=0.053 Sum_probs=105.9
Q ss_pred ceeeeCCCCC--CEEEEEEEeCCCEEEEEeCC--CcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEc-CCCcEE
Q 001287 68 EGLLISPSQL--PYKNLEFLQNQGFLISITND--NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGD-ENGLMS 142 (1107)
Q Consensus 68 ~~~~~~~h~~--~V~~l~fs~d~~~L~S~s~d--~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~-~dg~V~ 142 (1107)
+++-..+|.. -...|.|+. +....|.+.. +.|++.|+.+++++.....+.......+...++.|+... .++.+
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v- 87 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEG- 87 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE-
T ss_pred EEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEE-
Confidence 3444446654 578999987 4555666654 489999999999999887776665554445567777665 45655
Q ss_pred EEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCcccc
Q 001287 143 VIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQ 222 (1107)
Q Consensus 143 vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~ 222 (1107)
|.+|..+.++... +..+.+ + .++++ ++.+|+++..++.|.++|..+.+++....-...
T Consensus 88 -~v~D~~tl~~~~t-i~~~~~-------------G--wglt~----dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~- 145 (243)
T 3mbr_X 88 -FVYDLATLTPRAR-FRYPGE-------------G--WALTS----DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAG- 145 (243)
T ss_dssp -EEEETTTTEEEEE-EECSSC-------------C--CEEEE----CSSCEEEECSSSEEEEECTTTCCEEEEEECEET-
T ss_pred -EEEECCcCcEEEE-EeCCCC-------------c--eEEee----CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccC-
Confidence 4455555666543 222211 2 34444 456688888889999999999876543321000
Q ss_pred ccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCC
Q 001287 223 LKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1107)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~ 283 (1107)
+ ..-..++-+.|. +|...+....+..|.+.|..+++
T Consensus 146 ----------------g-------~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~tG~ 181 (243)
T 3mbr_X 146 ----------------G-------RPLDNLNELEWV--NGELLANVWLTSRIARIDPASGK 181 (243)
T ss_dssp ----------------T-------EECCCEEEEEEE--TTEEEEEETTTTEEEEECTTTCB
T ss_pred ----------------C-------cccccceeeEEe--CCEEEEEECCCCeEEEEECCCCC
Confidence 0 002345567765 67655555578899999998875
No 268
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.31 E-value=0.02 Score=63.24 Aligned_cols=198 Identities=10% Similarity=0.026 Sum_probs=114.1
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCC----C-CCCEEEEEEEe-CCCEEEEEeC--------------
Q 001287 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP----S-QLPYKNLEFLQ-NQGFLISITN-------------- 96 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~----h-~~~V~~l~fs~-d~~~L~S~s~-------------- 96 (1107)
.+..++++++...|.++...+.|..++.++.....+.. . -.....+++.+ +|...++-..
T Consensus 81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~ 160 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDT 160 (322)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHH
T ss_pred CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcc
Confidence 57889999844456666666668888876543222211 1 12467899999 8766665432
Q ss_pred ---CCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEc-CCCcEEEEEeecCC-CceeecceeecccccccccCC
Q 001287 97 ---DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADE-GKLFQLPYNISADALSEKAGF 171 (1107)
Q Consensus 97 ---d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~-~dg~V~vw~~d~~~-~~l~~~~~~i~~~~~~~~~~~ 171 (1107)
++.|..||..+++.......-.....+++++++++|+++. .++.|++++++... +.... +...
T Consensus 161 ~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~----~~~~-------- 228 (322)
T 2fp8_A 161 SDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEV----LVKI-------- 228 (322)
T ss_dssp TCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEE----EEEC--------
T ss_pred cCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccce----EEeC--------
Confidence 3668899988776543332223456789999999888875 45767666655311 11110 1100
Q ss_pred CCCCCCCeEEEEcccCCCCCEEEEEEC----------CCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccC
Q 001287 172 PLLSHQPVVGVLPHPNSSGNRVLIAYE----------NALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEG 241 (1107)
Q Consensus 172 ~~~~~~~V~~v~f~P~~~~~~ll~~~~----------dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1107)
.+ ...+++.+ +|.+.++... .+.|..+|.. ++.+...... .+.
T Consensus 229 ----~g-P~gi~~d~--~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~------------~g~------- 281 (322)
T 2fp8_A 229 ----PN-PGNIKRNA--DGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLP------------PPF------- 281 (322)
T ss_dssp ----SS-EEEEEECT--TSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECC------------TTT-------
T ss_pred ----CC-CCCeEECC--CCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECC------------CCC-------
Confidence 03 67788865 6774444433 3667888875 4443332110 000
Q ss_pred CCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCC
Q 001287 242 ISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1107)
Q Consensus 242 ~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~ 281 (1107)
.-..++++++ .+|...++...++.|..+++..
T Consensus 282 ------~~~~~~~~~~--~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 282 ------AGEHFEQIQE--HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp ------TTSCCCEEEE--ETTEEEEECSSCSEEEEEEC--
T ss_pred ------ccccceEEEE--eCCEEEEeecCCCceEEEeccc
Confidence 0234666664 4566555555678899988753
No 269
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.28 E-value=0.038 Score=58.95 Aligned_cols=183 Identities=11% Similarity=0.004 Sum_probs=110.6
Q ss_pred CEEEEEECCCcEEEEeCCCccee------eeCCCCCCEEEEEEEeCCCEEEEEeC-CCcEEEEEcCCCeeeeeecc-CCC
Q 001287 48 RLLAIATLDGRIKVIGGDGIEGL------LISPSQLPYKNLEFLQNQGFLISITN-DNEIQVWSLESRSLACCLKW-ESN 119 (1107)
Q Consensus 48 ~~LA~Gs~dg~I~iw~~~~~~~~------~~~~h~~~V~~l~fs~d~~~L~S~s~-d~~I~vWDl~s~~~~~~~~~-~~~ 119 (1107)
++|..+.. +.|+.+++++.... ...........++|++++++|+.+.. ++.|.++|...+........ ...
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 45656554 57888888765321 11111234679999997777766654 67899999987754433322 256
Q ss_pred eEEEEEecCCCEEEEEcC-CCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEEC
Q 001287 120 ITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE 198 (1107)
Q Consensus 120 Vt~l~~~~~~~~l~~g~~-dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~ 198 (1107)
...+++++++..|++++. .+.|.+++++.. ..... +... ......++++|. +.+|+.+..
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~--~~~~~---~~~~------------~~~P~~i~vd~~--~g~lyv~~~ 141 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGT--QRRVL---FDTG------------LVNPRGIVTDPV--RGNLYWTDW 141 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEEE---ECSS------------CSSEEEEEEETT--TTEEEEEEC
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCC--CEEEE---EECC------------CCCccEEEEeeC--CCEEEEEEC
Confidence 889999998887877764 566666665422 11110 1111 145789999873 444666554
Q ss_pred ---CCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEE-cCCcE
Q 001287 199 ---NALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY-IDGDI 274 (1107)
Q Consensus 199 ---dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~-~dG~I 274 (1107)
.+.|..++++......+... .......+++. +++..|+.+. ..+.|
T Consensus 142 ~~~~~~I~~~~~dg~~~~~~~~~-----------------------------~~~~P~gia~d-~~~~~lyv~d~~~~~I 191 (267)
T 1npe_A 142 NRDNPKIETSHMDGTNRRILAQD-----------------------------NLGLPNGLTFD-AFSSQLCWVDAGTHRA 191 (267)
T ss_dssp CSSSCEEEEEETTSCCCEEEECT-----------------------------TCSCEEEEEEE-TTTTEEEEEETTTTEE
T ss_pred CCCCcEEEEEecCCCCcEEEEEC-----------------------------CCCCCcEEEEc-CCCCEEEEEECCCCEE
Confidence 36777777765432211100 02345678875 8777776555 45788
Q ss_pred EEEeCC
Q 001287 275 LLWNTS 280 (1107)
Q Consensus 275 ~lWd~~ 280 (1107)
.+++..
T Consensus 192 ~~~~~~ 197 (267)
T 1npe_A 192 ECLNPA 197 (267)
T ss_dssp EEEETT
T ss_pred EEEecC
Confidence 888875
No 270
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.27 E-value=0.0084 Score=74.80 Aligned_cols=111 Identities=11% Similarity=-0.011 Sum_probs=73.2
Q ss_pred CeEEEEEc-CCCCEEEEEECC-C----cEEEEeCCCc-ceeeeCCCCCCEEEEEEEeCCCEEEEEeCC-----CcEEEEE
Q 001287 37 TASILAFD-HIQRLLAIATLD-G----RIKVIGGDGI-EGLLISPSQLPYKNLEFLQNQGFLISITND-----NEIQVWS 104 (1107)
Q Consensus 37 ~i~~lafs-p~~~~LA~Gs~d-g----~I~iw~~~~~-~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d-----~~I~vWD 104 (1107)
.+...+|| |||++||.+... | .|+++++.+. +.+.. .-......+.|+||+..|+.+..+ ..|.+|+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~ 253 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV 253 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence 57789999 999999987653 3 4999999776 53211 001124578899999888877765 3688899
Q ss_pred cCCCee----eeeeccCCCeEEEEEecCCCEEEEEcCC-CcEEEEEeec
Q 001287 105 LESRSL----ACCLKWESNITAFSVISGSHFMYIGDEN-GLMSVIKYDA 148 (1107)
Q Consensus 105 l~s~~~----~~~~~~~~~Vt~l~~~~~~~~l~~g~~d-g~V~vw~~d~ 148 (1107)
+.++.. +.......-...+.+++++++|+....+ +.-.||-++.
T Consensus 254 lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~ 302 (751)
T 2xe4_A 254 MGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDL 302 (751)
T ss_dssp TTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEES
T ss_pred CCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEEC
Confidence 987642 2111223446778999999988866532 2334454444
No 271
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.24 E-value=0.022 Score=62.35 Aligned_cols=210 Identities=13% Similarity=0.095 Sum_probs=117.8
Q ss_pred eeeeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCC--cEEEEE
Q 001287 27 RIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDN--EIQVWS 104 (1107)
Q Consensus 27 ~~~~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~--~I~vWD 104 (1107)
+....+........++++|+++++++-..+++|..|+.++...... .-......|+|.+++..+++....+ .|..+|
T Consensus 23 ~~~~~~p~~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d 101 (306)
T 2p4o_A 23 KIITSFPVNTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLV 101 (306)
T ss_dssp EEEEEECTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred eEeEeCCCCCCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEE-eCCCCceeEEEcCCCcEEEEeccCCcceEEEEc
Confidence 3444455557788999999999777777889999999876433222 2234688999999987655554333 477778
Q ss_pred cCCCeeeeeeccC--CCeEEEEEecCCCEEEEEc-CCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEE
Q 001287 105 LESRSLACCLKWE--SNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVG 181 (1107)
Q Consensus 105 l~s~~~~~~~~~~--~~Vt~l~~~~~~~~l~~g~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~ 181 (1107)
..++++....... .....+++.+++ .+++.+ .+|.| |.++...+.... +..... ... ............
T Consensus 102 ~~~g~~~~~~~~~~~~~~~g~~~~~~~-~~~v~d~~~g~i--~~~d~~~~~~~v--~~~~~~-~~~--~~~~~~~~~png 173 (306)
T 2p4o_A 102 KSDGTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAI--WLIDVVQPSGSI--WLEHPM-LAR--SNSESVFPAANG 173 (306)
T ss_dssp CTTSCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEE--EEEETTTTEEEE--EEECGG-GSC--SSTTCCSCSEEE
T ss_pred CCCCeEEEEEeCCCccccCcccccCCC-cEEEEECCCCeE--EEEeCCCCcEeE--EEECCc-ccc--ccccCCCCcCCC
Confidence 8888764433222 223444544444 455555 47754 556554332110 001100 000 000011134566
Q ss_pred EEcccCCCCCEEEEEE-CCCeEEEEEccC-CEEE--EEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEe
Q 001287 182 VLPHPNSSGNRVLIAY-ENALVILWDVSE-AQII--FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCW 257 (1107)
Q Consensus 182 v~f~P~~~~~~ll~~~-~dg~V~vwdl~~-~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w 257 (1107)
| +| ++..|+++. ..+.|.+|++.. +... ..... ......+++
T Consensus 174 i--s~--dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~------------------------------~~~P~gi~v 219 (306)
T 2p4o_A 174 L--KR--FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE------------------------------QTNIDDFAF 219 (306)
T ss_dssp E--EE--ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE------------------------------SCCCSSEEE
T ss_pred c--Cc--CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec------------------------------cCCCCCeEE
Confidence 6 55 455455544 567888998875 2210 00000 012334665
Q ss_pred ecCCCCEEEEEEcCCcEEEEeCC
Q 001287 258 ASSSGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 258 ~spdg~~l~sg~~dG~I~lWd~~ 280 (1107)
. ++|+..++....+.|.+++..
T Consensus 220 d-~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 220 D-VEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp B-TTCCEEEECBTTCCEEEECTT
T ss_pred C-CCCCEEEEeCCCCeEEEECCC
Confidence 4 889877776677889998864
No 272
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.24 E-value=1 Score=58.26 Aligned_cols=117 Identities=11% Similarity=0.031 Sum_probs=78.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcce--eeeCCCCCCEEEEEEEeC------CCEEEEEeC-CCcEEEEEcC
Q 001287 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG--LLISPSQLPYKNLEFLQN------QGFLISITN-DNEIQVWSLE 106 (1107)
Q Consensus 36 ~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~--~~~~~h~~~V~~l~fs~d------~~~L~S~s~-d~~I~vWDl~ 106 (1107)
..|++.+... .++++++ ++.|.++.++..+. .....-...|+|+++.+- +.+++.+.. |++|+|+++.
T Consensus 514 ~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~ 590 (1158)
T 3ei3_A 514 KNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP 590 (1158)
T ss_dssp CCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT
T ss_pred CEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC
Confidence 3566666553 5677775 67888887653221 222223567999999863 368888886 9999999999
Q ss_pred CCeeeeeeccC--CCeEEEEEe--cCCCEEEEEcCCCcEEEEEeecCCCceee
Q 001287 107 SRSLACCLKWE--SNITAFSVI--SGSHFMYIGDENGLMSVIKYDADEGKLFQ 155 (1107)
Q Consensus 107 s~~~~~~~~~~--~~Vt~l~~~--~~~~~l~~g~~dg~V~vw~~d~~~~~l~~ 155 (1107)
+-+.+...... ....++.+. ....+|.+|..||.+.-+.++..+|.+..
T Consensus 591 ~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d 643 (1158)
T 3ei3_A 591 SFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSD 643 (1158)
T ss_dssp TCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEE
T ss_pred CCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCcccc
Confidence 87766554432 244444443 34468999999998877778876666654
No 273
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.19 E-value=0.014 Score=61.45 Aligned_cols=165 Identities=13% Similarity=0.099 Sum_probs=104.1
Q ss_pred eeeCCCCC--CEEEEEEEeCCCEEEEEeCCC--cEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcC-CCcEEEE
Q 001287 70 LLISPSQL--PYKNLEFLQNQGFLISITNDN--EIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDE-NGLMSVI 144 (1107)
Q Consensus 70 ~~~~~h~~--~V~~l~fs~d~~~L~S~s~d~--~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~-dg~V~vw 144 (1107)
+-..+|.. -...|.|+ ++...+|.+.++ .|++.|+++++++..+..........+.+.++.|++... ++.+ |
T Consensus 34 v~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v--~ 110 (262)
T 3nol_A 34 VHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLG--F 110 (262)
T ss_dssp EEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE--E
T ss_pred EEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEE--E
Confidence 33445554 35889998 666667777665 899999999999998877666655444445677777764 5655 4
Q ss_pred EeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCcccccc
Q 001287 145 KYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLK 224 (1107)
Q Consensus 145 ~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~ 224 (1107)
.+|..+.++... +..+.+ + .++++ ++.+|+.+..++.|.++|..+.++.....-.. .
T Consensus 111 v~D~~t~~~~~t-i~~~~e-------------G--~glt~----dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~---~ 167 (262)
T 3nol_A 111 VWNIRNLRQVRS-FNYDGE-------------G--WGLTH----NDQYLIMSDGTPVLRFLDPESLTPVRTITVTA---H 167 (262)
T ss_dssp EEETTTCCEEEE-EECSSC-------------C--CCEEE----CSSCEEECCSSSEEEEECTTTCSEEEEEECEE---T
T ss_pred EEECccCcEEEE-EECCCC-------------c--eEEec----CCCEEEEECCCCeEEEEcCCCCeEEEEEEecc---C
Confidence 555555565543 222221 1 23334 56667777778889999999877654321100 0
Q ss_pred ccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCC
Q 001287 225 DGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1107)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~ 283 (1107)
+ ..-..+..+.|. +|...+....++.|.+.|..+++
T Consensus 168 --------------g-------~~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~tG~ 203 (262)
T 3nol_A 168 --------------G-------EELPELNELEWV--DGEIFANVWQTNKIVRIDPETGK 203 (262)
T ss_dssp --------------T-------EECCCEEEEEEE--TTEEEEEETTSSEEEEECTTTCB
T ss_pred --------------C-------ccccccceeEEE--CCEEEEEEccCCeEEEEECCCCc
Confidence 0 001234457775 67666655678899999998874
No 274
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.15 E-value=0.012 Score=61.90 Aligned_cols=165 Identities=18% Similarity=0.108 Sum_probs=104.7
Q ss_pred eeeeCCCCC--CEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEc-CCCcEEEEE
Q 001287 69 GLLISPSQL--PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIK 145 (1107)
Q Consensus 69 ~~~~~~h~~--~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~-~dg~V~vw~ 145 (1107)
++-..+|.. -...|.|+. +...++.+.++.|++.|+++++.+..+ .........+...++.|+... .++.+ |.
T Consensus 45 Vv~~~phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v--~V 120 (268)
T 3nok_A 45 IIREYPHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLL--FT 120 (268)
T ss_dssp EEEEEECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEE--EE
T ss_pred EEEEEcCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEE--EE
Confidence 333445544 358899984 466677778889999999999998887 666655533444566666665 45544 55
Q ss_pred eecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccc
Q 001287 146 YDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKD 225 (1107)
Q Consensus 146 ~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~ 225 (1107)
+|..+.++... +..+. . -.++++ ++.+|+.+..++.|.++|..+.+++....-.. .
T Consensus 121 ~D~~Tl~~~~t-i~~~~--------------e-GwGLt~----Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~---~- 176 (268)
T 3nok_A 121 WSGMPPQRERT-TRYSG--------------E-GWGLCY----WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL---R- 176 (268)
T ss_dssp EETTTTEEEEE-EECSS--------------C-CCCEEE----ETTEEEEECSSSEEEEECTTTCCEEEEEECEE---T-
T ss_pred EECCcCcEEEE-EeCCC--------------c-eeEEec----CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC---C-
Confidence 55555666643 22221 1 134444 56778888889999999999987754331100 0
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCC
Q 001287 226 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1107)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~ 283 (1107)
+ ..-..+..+.|. +|...+....++.|.+.|..+++
T Consensus 177 -------------g-------~~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~TG~ 212 (268)
T 3nok_A 177 -------------G-------QPVELINELECA--NGVIYANIWHSSDVLEIDPATGT 212 (268)
T ss_dssp -------------T-------EECCCEEEEEEE--TTEEEEEETTCSEEEEECTTTCB
T ss_pred -------------C-------cccccccccEEe--CCEEEEEECCCCeEEEEeCCCCc
Confidence 0 002234567775 77655555578899999998874
No 275
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.14 E-value=0.024 Score=60.19 Aligned_cols=164 Identities=11% Similarity=0.031 Sum_probs=99.4
Q ss_pred eCCCCC--CEEEEEEEeCCCEEEEE-eC--CCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcC-CCcEEEEE
Q 001287 72 ISPSQL--PYKNLEFLQNQGFLISI-TN--DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDE-NGLMSVIK 145 (1107)
Q Consensus 72 ~~~h~~--~V~~l~fs~d~~~L~S~-s~--d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~-dg~V~vw~ 145 (1107)
..+|.. ....|+|++++ +|..+ +. ++.|.+.|+.+++.+..+..........+...++.|+++.. ++.+.+
T Consensus 14 ~~p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~v-- 90 (266)
T 2iwa_A 14 EFPHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFI-- 90 (266)
T ss_dssp EEECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEE--
T ss_pred EEECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEE--
Confidence 334543 36899999985 55444 43 57899999999999988755443232223334667777764 565555
Q ss_pred eecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccc
Q 001287 146 YDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKD 225 (1107)
Q Consensus 146 ~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~ 225 (1107)
+|..+.++... ++... ..-..+++ ++++++++..++.|.++|..+.+......-...
T Consensus 91 iD~~t~~v~~~---i~~g~------------~~g~glt~----Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~---- 147 (266)
T 2iwa_A 91 YDRRTLSNIKN---FTHQM------------KDGWGLAT----DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN---- 147 (266)
T ss_dssp EETTTTEEEEE---EECCS------------SSCCEEEE----CSSSEEEECSSSEEEEECTTTCCEEEEEECEET----
T ss_pred EECCCCcEEEE---EECCC------------CCeEEEEE----CCCEEEEECCCCeEEEEECCCCcEEEEEEECCC----
Confidence 55555555543 33110 11133444 566688877889999999999776543311000
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCC
Q 001287 226 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1107)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~ 283 (1107)
+ ..-..+..+.|. +|...+....++.|.+-|..+++
T Consensus 148 -------------~-------~p~~~~nele~~--dg~lyvn~~~~~~V~vID~~tg~ 183 (266)
T 2iwa_A 148 -------------G-------HRVIRLNELEYI--NGEVWANIWQTDCIARISAKDGT 183 (266)
T ss_dssp -------------T-------EECCCEEEEEEE--TTEEEEEETTSSEEEEEETTTCC
T ss_pred -------------C-------cccccceeEEEE--CCEEEEecCCCCeEEEEECCCCc
Confidence 0 001135567765 67555555568899999998774
No 276
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.03 E-value=0.13 Score=62.84 Aligned_cols=80 Identities=13% Similarity=0.105 Sum_probs=44.5
Q ss_pred EEEEEec-CCCEEEEEcCCC---------cEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCC
Q 001287 121 TAFSVIS-GSHFMYIGDENG---------LMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1107)
Q Consensus 121 t~l~~~~-~~~~l~~g~~dg---------~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~ 190 (1107)
.+.++.+ +++.++.|+.+. .-.+|.||..+++..+.+ .++.. +.....++++.+ ++
T Consensus 189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~-~~~~~-----------~~~~~~~~~~~~--~g 254 (656)
T 1k3i_A 189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT-VTVTK-----------HDMFCPGISMDG--NG 254 (656)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE-EEECS-----------CCCSSCEEEECT--TS
T ss_pred eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc-ccCCC-----------CCCccccccCCC--CC
Confidence 4567777 777777776432 224566666555544321 11110 112233445433 67
Q ss_pred CEEEEEEC-CCeEEEEEccCCEEEE
Q 001287 191 NRVLIAYE-NALVILWDVSEAQIIF 214 (1107)
Q Consensus 191 ~~ll~~~~-dg~V~vwdl~~~~~~~ 214 (1107)
..+++|+. +..+.+||..+.+-..
T Consensus 255 ~lyv~GG~~~~~v~~yd~~t~~W~~ 279 (656)
T 1k3i_A 255 QIVVTGGNDAKKTSLYDSSSDSWIP 279 (656)
T ss_dssp CEEEECSSSTTCEEEEEGGGTEEEE
T ss_pred CEEEeCCCCCCceEEecCcCCceeE
Confidence 77777763 4589999999886543
No 277
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.02 E-value=0.2 Score=54.86 Aligned_cols=156 Identities=13% Similarity=-0.027 Sum_probs=96.8
Q ss_pred CCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCC----cc-eeeeCCCCCCEEEEEEEeCCCEEEEE-eCCCcEEEEEcCCC
Q 001287 36 ATASILAFDHIQRLLAIAT-LDGRIKVIGGDG----IE-GLLISPSQLPYKNLEFLQNQGFLISI-TNDNEIQVWSLESR 108 (1107)
Q Consensus 36 ~~i~~lafsp~~~~LA~Gs-~dg~I~iw~~~~----~~-~~~~~~h~~~V~~l~fs~d~~~L~S~-s~d~~I~vWDl~s~ 108 (1107)
..+..++|++.+..|.... .++.|+.++.++ .. .......-.....|++.+.++.|+.+ ...+.|.+.|+...
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 4578899999776665554 458999999875 22 22222222345889998765666554 45788999999866
Q ss_pred eeeeeec-cCCCeEEEEEecCCCEEEEEcCC--CcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcc
Q 001287 109 SLACCLK-WESNITAFSVISGSHFMYIGDEN--GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1107)
Q Consensus 109 ~~~~~~~-~~~~Vt~l~~~~~~~~l~~g~~d--g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~ 185 (1107)
....... .-.....++++|.+.+|++.+.. +.|...+++ |..... +.... .....++++.
T Consensus 110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d---G~~~~~---~~~~~-----------~~~P~gla~d 172 (316)
T 1ijq_A 110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN---GVDIYS---LVTEN-----------IQWPNGITLD 172 (316)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT---SCCEEE---EECSS-----------CSCEEEEEEE
T ss_pred ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC---CCCeEE---EEECC-----------CCCceEEEEe
Confidence 4433332 23567899999988888877653 555444443 222211 11111 1568899998
Q ss_pred cCCCCCEEEEEE-CCCeEEEEEccCC
Q 001287 186 PNSSGNRVLIAY-ENALVILWDVSEA 210 (1107)
Q Consensus 186 P~~~~~~ll~~~-~dg~V~vwdl~~~ 210 (1107)
|. +.+|+.+. ..+.|..+|+...
T Consensus 173 ~~--~~~lY~~D~~~~~I~~~d~dg~ 196 (316)
T 1ijq_A 173 LL--SGRLYWVDSKLHSISSIDVNGG 196 (316)
T ss_dssp TT--TTEEEEEETTTTEEEEEETTSC
T ss_pred cc--CCEEEEEECCCCeEEEEecCCC
Confidence 74 44465555 4568889998764
No 278
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.94 E-value=0.7 Score=55.32 Aligned_cols=105 Identities=12% Similarity=0.173 Sum_probs=59.7
Q ss_pred CCEEEEEECCCcEEEEeCCCcceeeeCCCCCC----------EEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeecc
Q 001287 47 QRLLAIATLDGRIKVIGGDGIEGLLISPSQLP----------YKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW 116 (1107)
Q Consensus 47 ~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~----------V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~ 116 (1107)
+..|.+++.++.|+-+|....+.+-......+ ...+.+ .+..|+.++.|+.|..+|..+++.+.....
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 45666777755588888755444422211111 022222 346788888999999999999998866532
Q ss_pred CC-----CeEE-EEEecC---CC-EEEEEcC------CCcEEEEEeecCCCceee
Q 001287 117 ES-----NITA-FSVISG---SH-FMYIGDE------NGLMSVIKYDADEGKLFQ 155 (1107)
Q Consensus 117 ~~-----~Vt~-l~~~~~---~~-~l~~g~~------dg~V~vw~~d~~~~~l~~ 155 (1107)
.. .+++ -.+..+ ++ .++++.. +|. |+-+|..+|++.-
T Consensus 146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~--v~alD~~tG~~~W 198 (582)
T 1flg_A 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGR--LFARDPDTGEEIW 198 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCE--EEEECTTTCCEEE
T ss_pred CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCE--EEEEECCCCCEEe
Confidence 21 1111 111111 22 6777653 564 4666666677663
No 279
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.86 E-value=0.22 Score=54.62 Aligned_cols=189 Identities=13% Similarity=0.233 Sum_probs=115.8
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeC----CCE--EEEEe--C--CCcEEEEEc--CCCeee
Q 001287 44 DHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQN----QGF--LISIT--N--DNEIQVWSL--ESRSLA 111 (1107)
Q Consensus 44 sp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d----~~~--L~S~s--~--d~~I~vWDl--~s~~~~ 111 (1107)
+|..++++.-...+-+.+||+++.++..+.. +.+..+..-|+ +.. |+.++ . +++|.++++ .++. +
T Consensus 37 dp~~s~ii~t~k~~gL~Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l 113 (355)
T 3amr_A 37 TPQNSKLITTNKKSGLVVYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-L 113 (355)
T ss_dssp CGGGCEEEEEETTTEEEEEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-E
T ss_pred CCCccEEEEEcCCCCEEEEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-e
Confidence 4556665555566889999998887776643 56777777663 221 33333 3 578999977 4444 3
Q ss_pred eeec-------cC-CCeEEEEE--ecCCC--EEEEEcCCCcEEEEEeecC-CC----ceeecceeecccccccccCCCCC
Q 001287 112 CCLK-------WE-SNITAFSV--ISGSH--FMYIGDENGLMSVIKYDAD-EG----KLFQLPYNISADALSEKAGFPLL 174 (1107)
Q Consensus 112 ~~~~-------~~-~~Vt~l~~--~~~~~--~l~~g~~dg~V~vw~~d~~-~~----~l~~~~~~i~~~~~~~~~~~~~~ 174 (1107)
..+. .. ..+..+++ ++... ++++...+|.+..|.+... .+ ++++. +.+.
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~-f~lg------------- 179 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRA-FKMN------------- 179 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEE-EECS-------------
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEE-ecCC-------------
Confidence 3331 11 45666777 66433 7899999999988888542 23 22221 2222
Q ss_pred CCCCeEEEEcccCCCCCEEEEEECCCeEEEEEcc-----CCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCC
Q 001287 175 SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVS-----EAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEE 249 (1107)
Q Consensus 175 ~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1107)
..+..+...+ ...+|+++-.+.-|..++.+ +.+++...+.. .+ .
T Consensus 180 --sq~EgcvvDd--~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g--~l-------------------------~ 228 (355)
T 3amr_A 180 --SQTEGMAADD--EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGR--HL-------------------------T 228 (355)
T ss_dssp --SCEEEEEEET--TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSS--SB-------------------------C
T ss_pred --CCcceEEEcC--CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCC--cc-------------------------c
Confidence 4577888855 45569999999776555644 23444333210 00 2
Q ss_pred CceeEEEee-cCCCC-EEEEEE-cCCcEEEEeCC
Q 001287 250 KEISALCWA-SSSGS-ILAVGY-IDGDILLWNTS 280 (1107)
Q Consensus 250 ~~Vtsl~w~-spdg~-~l~sg~-~dG~I~lWd~~ 280 (1107)
..+..++.. .++|+ +|++.+ .++++.+||..
T Consensus 229 aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 229 RDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp SCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred cCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 346666642 45666 666666 57799999985
No 280
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=96.83 E-value=0.02 Score=62.94 Aligned_cols=175 Identities=15% Similarity=0.183 Sum_probs=106.8
Q ss_pred CCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeecc-CCCeEEEEE
Q 001287 47 QRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW-ESNITAFSV 125 (1107)
Q Consensus 47 ~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~-~~~Vt~l~~ 125 (1107)
+..|.+|+.+|.|..|+..+........+...+.++.+.+++ .|..++.++.|..+|.. ++.+..... ...+.++.+
T Consensus 107 ~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~ 184 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDG-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASI 184 (330)
T ss_dssp TTEEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTS-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE
T ss_pred CCEEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCC-EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEE
Confidence 566788988999999998844333333344456666666664 46667778999999999 776655533 345666777
Q ss_pred ecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEE
Q 001287 126 ISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILW 205 (1107)
Q Consensus 126 ~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vw 205 (1107)
++++. +++|+ +.|+.++ .+++.. +.+.... ..+.++...+ ++. |.+++.++.|..+
T Consensus 185 d~~g~-l~v~t--~~l~~~d---~~g~~~---~~~~~~~------------~~~~~~~~~~--~g~-l~v~t~~~gl~~~ 240 (330)
T 3hxj_A 185 GKDGT-IYFGS--DKVYAIN---PDGTEK---WNFYAGY------------WTVTRPAISE--DGT-IYVTSLDGHLYAI 240 (330)
T ss_dssp CTTCC-EEEES--SSEEEEC---TTSCEE---EEECCSS------------CCCSCCEECT--TSC-EEEEETTTEEEEE
T ss_pred cCCCE-EEEEe--CEEEEEC---CCCcEE---EEEccCC------------cceeceEECC--CCe-EEEEcCCCeEEEE
Confidence 66665 55666 6565555 234433 2222111 3355566643 555 8888888888888
Q ss_pred EccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeC
Q 001287 206 DVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 279 (1107)
Q Consensus 206 dl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~ 279 (1107)
|...... +..... ...+.++... ++| .|..++.+|.|..+|.
T Consensus 241 ~~~g~~~-~~~~~~-----------------------------~~~~~~~~~~-~~g-~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 241 NPDGTEK-WRFKTG-----------------------------KRIESSPVIG-NTD-TIYFGSYDGHLYAINP 282 (330)
T ss_dssp CTTSCEE-EEEECS-----------------------------SCCCSCCEEC-TTS-CEEEECTTCEEEEECT
T ss_pred CCCCCEe-EEeeCC-----------------------------CCccccceEc-CCC-eEEEecCCCCEEEECC
Confidence 8544443 332110 1112233322 444 5778888888999885
No 281
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.82 E-value=0.35 Score=53.82 Aligned_cols=158 Identities=15% Similarity=0.016 Sum_probs=98.4
Q ss_pred CCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCcceee-eCCCCCCEEEEEEEeCCCEEEEEe-CCCcEEEEEcCCCeeee
Q 001287 36 ATASILAFDHIQRLLAIAT-LDGRIKVIGGDGIEGLL-ISPSQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLESRSLAC 112 (1107)
Q Consensus 36 ~~i~~lafsp~~~~LA~Gs-~dg~I~iw~~~~~~~~~-~~~h~~~V~~l~fs~d~~~L~S~s-~d~~I~vWDl~s~~~~~ 112 (1107)
..+..++|++....|.... ..+.|+.++.++..... ....-.....|++.+.++.|+-+. ..+.|.+.+++......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 3478899998766665554 56889999987654332 222223457899998666665554 56789999988664333
Q ss_pred eec-cCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCC
Q 001287 113 CLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1107)
Q Consensus 113 ~~~-~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~ 191 (1107)
... .-.....++++|.+.+|+..+....-+|+.++.+...... +.... .....+|++.|. +.
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~----~~~~~-----------~~~PnGla~d~~--~~ 215 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI----IADTH-----------LFWPNGLTIDYA--GR 215 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE----SCCSS-----------CSCEEEEEEETT--TT
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEE----EEECC-----------CCCcceEEEeCC--CC
Confidence 332 2356789999998888887765431244555433222111 11111 156899999874 34
Q ss_pred EEEEEE-CCCeEEEEEccCC
Q 001287 192 RVLIAY-ENALVILWDVSEA 210 (1107)
Q Consensus 192 ~ll~~~-~dg~V~vwdl~~~ 210 (1107)
+|..+. ..+.|..+|+...
T Consensus 216 ~lY~aD~~~~~I~~~~~dG~ 235 (349)
T 3v64_C 216 RMYWVDAKHHVIERANLDGS 235 (349)
T ss_dssp EEEEEETTTTEEEEEETTSC
T ss_pred EEEEEECCCCEEEEEeCCCC
Confidence 455554 4568888888764
No 282
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.81 E-value=0.23 Score=56.23 Aligned_cols=158 Identities=14% Similarity=0.015 Sum_probs=98.3
Q ss_pred CCeEEEEEcCCCCEEEEE-ECCCcEEEEeCCCcceee-eCCCCCCEEEEEEEeCCCEEEEEe-CCCcEEEEEcCCCeeee
Q 001287 36 ATASILAFDHIQRLLAIA-TLDGRIKVIGGDGIEGLL-ISPSQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLESRSLAC 112 (1107)
Q Consensus 36 ~~i~~lafsp~~~~LA~G-s~dg~I~iw~~~~~~~~~-~~~h~~~V~~l~fs~d~~~L~S~s-~d~~I~vWDl~s~~~~~ 112 (1107)
..+..++|++....|... ...++|+.++.++..... ....-.....|++.+.++.|+-+. ..+.|.+.+++......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 457789999866655554 456889999987765432 222223457789998666665554 46789999987654333
Q ss_pred eec-cCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCC
Q 001287 113 CLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1107)
Q Consensus 113 ~~~-~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~ 191 (1107)
... .-.....++++|.+.+|+..+....-+|+.++.+....... +... .....+|++.|. +.
T Consensus 196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~---~~~~------------~~~PnGlavd~~--~~ 258 (386)
T 3v65_B 196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII---ADTH------------LFWPNGLTIDYA--GR 258 (386)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE---ECSS------------CSCEEEEEEEGG--GT
T ss_pred eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEE---EECC------------CCCeeeEEEeCC--CC
Confidence 332 22567899999988888887754322455555432221110 1111 156889999874 33
Q ss_pred EEEEEE-CCCeEEEEEccCC
Q 001287 192 RVLIAY-ENALVILWDVSEA 210 (1107)
Q Consensus 192 ~ll~~~-~dg~V~vwdl~~~ 210 (1107)
+|+.+. ..+.|..+|+...
T Consensus 259 ~lY~aD~~~~~I~~~d~dG~ 278 (386)
T 3v65_B 259 RMYWVDAKHHVIERANLDGS 278 (386)
T ss_dssp EEEEEETTTTEEEEECTTSC
T ss_pred EEEEEECCCCEEEEEeCCCC
Confidence 455554 4567888888764
No 283
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.72 E-value=0.39 Score=54.56 Aligned_cols=159 Identities=13% Similarity=-0.016 Sum_probs=100.8
Q ss_pred CCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCc-----ceeeeCCCCCCEEEEEEEeCCCEEEEEe-CCCcEEEEEcCC
Q 001287 35 PATASILAFDHIQRLLAIAT-LDGRIKVIGGDGI-----EGLLISPSQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLES 107 (1107)
Q Consensus 35 ~~~i~~lafsp~~~~LA~Gs-~dg~I~iw~~~~~-----~~~~~~~h~~~V~~l~fs~d~~~L~S~s-~d~~I~vWDl~s 107 (1107)
...+..|+|++....|.... ..+.|+.++.++. ........-.....|++.+.++.|+-+. ..+.|.+.|++.
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 35678999999777666654 4588999988652 2223333445678999998555565554 567899999987
Q ss_pred Ceeeeeec-cCCCeEEEEEecCCCEEEEEcC--CCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEc
Q 001287 108 RSLACCLK-WESNITAFSVISGSHFMYIGDE--NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1107)
Q Consensus 108 ~~~~~~~~-~~~~Vt~l~~~~~~~~l~~g~~--dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f 184 (1107)
......+. .-.....++++|.+.+|+..+. .+.|+..+++. ...... +... .....+|++
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG--~~~~~~---~~~~------------l~~P~glav 253 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG--VDIYSL---VTEN------------IQWPNGITL 253 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS--CSCEEE---ECSS------------CSCEEEEEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC--CccEEE---EECC------------CCceEEEEE
Confidence 75544443 3345789999998888888774 35555544442 121110 1111 156899999
Q ss_pred ccCCCCCEEEEEE-CCCeEEEEEccCCEE
Q 001287 185 HPNSSGNRVLIAY-ENALVILWDVSEAQI 212 (1107)
Q Consensus 185 ~P~~~~~~ll~~~-~dg~V~vwdl~~~~~ 212 (1107)
.|. +.+|+.+. ..+.|..+|++....
T Consensus 254 d~~--~~~lY~aD~~~~~I~~~d~dG~~~ 280 (400)
T 3p5b_L 254 DLL--SGRLYWVDSKLHSISSIDVNGGNR 280 (400)
T ss_dssp ETT--TTEEEEEETTTTEEEEEETTSCCC
T ss_pred EeC--CCEEEEEECCCCEEEEEeCCCCcc
Confidence 874 44566665 456888888876543
No 284
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.70 E-value=0.065 Score=65.62 Aligned_cols=113 Identities=11% Similarity=0.053 Sum_probs=72.0
Q ss_pred CCCeEEEEEcC-CCCEEEEEECCC-----------cEEEEeCCCccee----eeCCCCCCEEEEEEEeCCCEEEEEeC-C
Q 001287 35 PATASILAFDH-IQRLLAIATLDG-----------RIKVIGGDGIEGL----LISPSQLPYKNLEFLQNQGFLISITN-D 97 (1107)
Q Consensus 35 ~~~i~~lafsp-~~~~LA~Gs~dg-----------~I~iw~~~~~~~~----~~~~h~~~V~~l~fs~d~~~L~S~s~-d 97 (1107)
|......++.| ++++++.|+.+. .+.+||....+.. ...++......+++..++..++.++. +
T Consensus 185 P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~ 264 (656)
T 1k3i_A 185 PIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA 264 (656)
T ss_dssp SSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSST
T ss_pred CCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCC
Confidence 33344677777 899999998653 5888998554322 22234444556788888888888874 5
Q ss_pred CcEEEEEcCCCeeeee--eccCCCeEEEEEecCCCEEEEEc-CC-----CcEEEEEee
Q 001287 98 NEIQVWSLESRSLACC--LKWESNITAFSVISGSHFMYIGD-EN-----GLMSVIKYD 147 (1107)
Q Consensus 98 ~~I~vWDl~s~~~~~~--~~~~~~Vt~l~~~~~~~~l~~g~-~d-----g~V~vw~~d 147 (1107)
+.+.+||..+++-... +.....-.++++.++++.+++|+ .+ ..+.+|+..
T Consensus 265 ~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 265 KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence 6899999988754332 22222223455667888888887 33 345555543
No 285
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.68 E-value=0.2 Score=54.94 Aligned_cols=197 Identities=16% Similarity=0.060 Sum_probs=115.8
Q ss_pred CeEEEEEcCCCCEEEEE-ECCCcEEEEeCCCcc--eeeeCCCCCCEEEEEEEeCCCEEEEE-eCCCcEEEEEcCCCeeee
Q 001287 37 TASILAFDHIQRLLAIA-TLDGRIKVIGGDGIE--GLLISPSQLPYKNLEFLQNQGFLISI-TNDNEIQVWSLESRSLAC 112 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~G-s~dg~I~iw~~~~~~--~~~~~~h~~~V~~l~fs~d~~~L~S~-s~d~~I~vWDl~s~~~~~ 112 (1107)
.+.+++|++.+..|... ...+.|+.++.++.. .......-.....|++.+.++.|+-+ ...+.|.+.+++......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 46689999865555444 456889999886652 11222222346789998755555544 456789999998654333
Q ss_pred ee-ccCCCeEEEEEecCCCEEEEEcC--CCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCC
Q 001287 113 CL-KWESNITAFSVISGSHFMYIGDE--NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1107)
Q Consensus 113 ~~-~~~~~Vt~l~~~~~~~~l~~g~~--dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~ 189 (1107)
.. ..-.....++++|.+.+|+..+. .+.| +.++.+ |..... . +... .....+|++.|.
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I--~r~~~d-G~~~~~-~-~~~~------------l~~Pnglavd~~-- 176 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKI--ERAGMD-GSSRFI-I-INSE------------IYWPNGLTLDYE-- 176 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEE--EEEETT-SCSCEE-E-ECSS------------CSCEEEEEEETT--
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEE--EEEEcC-CCCeEE-E-EECC------------CCCccEEEEecc--
Confidence 33 23356789999998888888874 4544 444433 222111 0 1111 156789999874
Q ss_pred CCEEEEEE-CCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEE
Q 001287 190 GNRVLIAY-ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1107)
Q Consensus 190 ~~~ll~~~-~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg 268 (1107)
+.+|..+. ..+.|..+|++......+... . .....+++.+ .+..+++-
T Consensus 177 ~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~---~--------------------------~~~P~glav~--~~~lywtd 225 (318)
T 3sov_A 177 EQKLYWADAKLNFIHKSNLDGTNRQAVVKG---S--------------------------LPHPFALTLF--EDILYWTD 225 (318)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEEEECS---C--------------------------CSCEEEEEEE--TTEEEEEE
T ss_pred CCEEEEEECCCCEEEEEcCCCCceEEEecC---C--------------------------CCCceEEEEe--CCEEEEEe
Confidence 44465554 467888888875432222110 0 1233455543 23445555
Q ss_pred EcCCcEEEEeCCCCC
Q 001287 269 YIDGDILLWNTSTTA 283 (1107)
Q Consensus 269 ~~dG~I~lWd~~~~~ 283 (1107)
...+.|..++..+++
T Consensus 226 ~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 226 WSTHSILACNKYTGE 240 (318)
T ss_dssp TTTTEEEEEETTTCC
T ss_pred cCCCeEEEEECCCCC
Confidence 567788888876553
No 286
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.66 E-value=0.077 Score=58.24 Aligned_cols=181 Identities=14% Similarity=0.206 Sum_probs=115.2
Q ss_pred CCcccccccceeeeecCCCCCeEEEEEcCCC----CE--EEEEEC----CCcEEEEeCC--CcceeeeCC------CC-C
Q 001287 17 GSLTAADLNLRIAVHYGIPATASILAFDHIQ----RL--LAIATL----DGRIKVIGGD--GIEGLLISP------SQ-L 77 (1107)
Q Consensus 17 ~~l~~~~~~~~~~~~~G~~~~i~~lafsp~~----~~--LA~Gs~----dg~I~iw~~~--~~~~~~~~~------h~-~ 77 (1107)
++|.-.+++-+...+... +.+..+.+-|.- +. ||+++. +++|++|.++ ...+..... .. .
T Consensus 50 ~gL~Vydl~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~ 128 (355)
T 3amr_A 50 SGLVVYSLDGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAIN 128 (355)
T ss_dssp TEEEEEETTSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCS
T ss_pred CCEEEEcCCCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCC
Confidence 567777777777766543 566666666632 11 444443 5789999773 333322211 11 3
Q ss_pred CEEEEEE--EeCCC--EEEEEeCCCcEEEEEc-------CCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEe
Q 001287 78 PYKNLEF--LQNQG--FLISITNDNEIQVWSL-------ESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKY 146 (1107)
Q Consensus 78 ~V~~l~f--s~d~~--~L~S~s~d~~I~vWDl-------~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~ 146 (1107)
.+..||+ ++..+ +++....++.+..|++ .+.+++..+...+.+..+.+++...+|+++-++.. ||.|
T Consensus 129 ~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~G--Iw~~ 206 (355)
T 3amr_A 129 EVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEA--IWKF 206 (355)
T ss_dssp SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTE--EEEE
T ss_pred CeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccce--EEEE
Confidence 4556777 66433 6888888999999998 23366777788889999999999999999999854 7888
Q ss_pred ecC-----CCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCC-EEEEEE-CCCeEEEEEcc-CCEEE
Q 001287 147 DAD-----EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN-RVLIAY-ENALVILWDVS-EAQII 213 (1107)
Q Consensus 147 d~~-----~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~-~ll~~~-~dg~V~vwdl~-~~~~~ 213 (1107)
+.+ +++++. .+....+ ...+.+|+.-+..+++ +|++++ .+..+.+||.. +.+.+
T Consensus 207 da~p~~~~~~~~v~---~~~~g~l----------~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~v 268 (355)
T 3amr_A 207 SAEPDGGSNGTVID---RADGRHL----------TRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYV 268 (355)
T ss_dssp ECSTTSCSCCEEEE---EBSSSSB----------CSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEE
T ss_pred eCCcCCCCCceEEE---EecCCcc----------ccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEE
Confidence 854 223332 1221110 0357888774433555 466666 57799999996 44443
No 287
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.65 E-value=0.034 Score=64.14 Aligned_cols=155 Identities=15% Similarity=0.128 Sum_probs=95.2
Q ss_pred CeEEEEEcC-CCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCC-C---cEEEEEcCCCeee
Q 001287 37 TASILAFDH-IQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND-N---EIQVWSLESRSLA 111 (1107)
Q Consensus 37 ~i~~lafsp-~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d-~---~I~vWDl~s~~~~ 111 (1107)
.+..|+++| ++..|.+....+.|+.++.++..+..+.........|+|++++.+|+.+... + ...+|-...+...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~ 217 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFK 217 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSC
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCcee
Confidence 457799998 4666767666689999999876665555555668899999999877766642 2 2333333333222
Q ss_pred --eeeccCCCeEEEEEecCCCEEEEEc-CCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCC
Q 001287 112 --CCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1107)
Q Consensus 112 --~~~~~~~~Vt~l~~~~~~~~l~~g~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1107)
..+........++++|+..+|++++ .++. |+.++...+..... +.+.. ......++|+|
T Consensus 218 ~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~--V~~~~~~~~~~~~~-~~~~~-------------~~~P~gia~~p-- 279 (430)
T 3tc9_A 218 VITELTKGQNCNGAETHPINGELYFNSWNAGQ--VFRYDFTTQETTPL-FTIQD-------------SGWEFHIQFHP-- 279 (430)
T ss_dssp SEEEEEECSSCCCEEECTTTCCEEEEETTTTE--EEEEETTTTEEEEE-EECSS-------------SSCCEEEEECT--
T ss_pred eeeeeccCCCceEEEEeCCCCEEEEEECCCCE--EEEEECCCCcEEEE-EEcCC-------------CCcceeEEEcC--
Confidence 2222233456788999555555554 5564 45555544443221 11211 14578999988
Q ss_pred CCCEEEEEE-CCCeEEEEEccC
Q 001287 189 SGNRVLIAY-ENALVILWDVSE 209 (1107)
Q Consensus 189 ~~~~ll~~~-~dg~V~vwdl~~ 209 (1107)
++++|+++. .++.|..++...
T Consensus 280 dG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 280 SGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp TSSEEEEEETTTTEEEEEEEET
T ss_pred CCCEEEEEECCCCEEEEEeCCc
Confidence 677555554 567888877664
No 288
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.64 E-value=0.26 Score=53.63 Aligned_cols=194 Identities=12% Similarity=0.019 Sum_probs=105.0
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCC--cEEEEeCCCcceee--eCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCC
Q 001287 32 YGIPATASILAFDHIQRLLAIATLDG--RIKVIGGDGIEGLL--ISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1107)
Q Consensus 32 ~G~~~~i~~lafsp~~~~LA~Gs~dg--~I~iw~~~~~~~~~--~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s 107 (1107)
...+..+..++++++++++++..... .|..++....+... .......-..+++.+++..+++-..++.|.++|..+
T Consensus 68 ~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~ 147 (306)
T 2p4o_A 68 ATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ 147 (306)
T ss_dssp EECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTT
T ss_pred EeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCC
Confidence 34456788999999999766554432 46666654433322 222222334555555543344443588899999876
Q ss_pred Ce--eeee-------e--ccCCCeEEEEEecCCCEEEEEcC-CCcEEEEEeecCCCceeecceeecccccccccCCCCCC
Q 001287 108 RS--LACC-------L--KWESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLS 175 (1107)
Q Consensus 108 ~~--~~~~-------~--~~~~~Vt~l~~~~~~~~l~~g~~-dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~ 175 (1107)
+. +... . ..-.....+ ++++++|+++.. .+.|++++++.. +++... -.+.. .
T Consensus 148 ~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~-g~~~~~-~~~~~-~----------- 211 (306)
T 2p4o_A 148 PSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDST-DKPGEP-EIFVE-Q----------- 211 (306)
T ss_dssp TEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTT-SCBCCC-EEEEE-S-----------
T ss_pred CcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCC-CCCCcc-EEEec-c-----------
Confidence 53 2110 0 011234455 778888887765 566666665531 332210 00100 0
Q ss_pred CCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEE
Q 001287 176 HQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 255 (1107)
Q Consensus 176 ~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl 255 (1107)
.....+++.| +|.++++....+.|.++|.. ++...+... . .. -...+++
T Consensus 212 -~~P~gi~vd~--dG~l~va~~~~~~V~~~~~~-G~~~~~~~~---~----~~--------------------~~~p~~~ 260 (306)
T 2p4o_A 212 -TNIDDFAFDV--EGNLYGATHIYNSVVRIAPD-RSTTIIAQA---E----QG--------------------VIGSTAV 260 (306)
T ss_dssp -CCCSSEEEBT--TCCEEEECBTTCCEEEECTT-CCEEEEECG---G----GT--------------------CTTEEEE
T ss_pred -CCCCCeEECC--CCCEEEEeCCCCeEEEECCC-CCEEEEeec---c----cc--------------------cCCceEE
Confidence 2345667755 67755555557788889876 444322111 0 00 2457888
Q ss_pred Eeec--CCCCEEEEEEcCC
Q 001287 256 CWAS--SSGSILAVGYIDG 272 (1107)
Q Consensus 256 ~w~s--pdg~~l~sg~~dG 272 (1107)
+|.. +++..|+.....+
T Consensus 261 a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 261 AFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EECCSTTTTTEEEEEECTT
T ss_pred EEecccCCCCEEEEECCCC
Confidence 8643 7888887776544
No 289
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=96.47 E-value=0.75 Score=48.36 Aligned_cols=173 Identities=10% Similarity=0.106 Sum_probs=107.7
Q ss_pred CCCCEEEEEEEeCCCEEEEEe-CCCcEEEEEcCCCeeeeeeccC--CCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCC
Q 001287 75 SQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLESRSLACCLKWE--SNITAFSVISGSHFMYIGDENGLMSVIKYDADEG 151 (1107)
Q Consensus 75 h~~~V~~l~fs~d~~~L~S~s-~d~~I~vWDl~s~~~~~~~~~~--~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~ 151 (1107)
-...++.|+|.|++..|++++ .++.|...|.. ++++..+... .....+++.+++.++++.-.++.+.++.++....
T Consensus 25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~ 103 (255)
T 3qqz_A 25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSE 103 (255)
T ss_dssp CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC
T ss_pred cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe
Confidence 335799999999878777654 57789999998 8887777443 5788889988887666655677787777765432
Q ss_pred ceee-cceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccC---CEEEEEeCCccccccccc
Q 001287 152 KLFQ-LPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE---AQIIFVGGGKDLQLKDGV 227 (1107)
Q Consensus 152 ~l~~-~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~---~~~~~~~g~~~~~~~~~~ 227 (1107)
+.. ....++- + .........+++|.| .+++|+++.......||.++. ........... +..
T Consensus 104 -i~~~~~~~~~~-------~-~~~~N~g~EGLA~d~--~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~--~~~-- 168 (255)
T 3qqz_A 104 -VKILKKIKIPL-------Q-ESPTNCGFEGLAYSR--QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKA--LQR-- 168 (255)
T ss_dssp -EEEEEEEECCC-------S-SCCCSSCCEEEEEET--TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHH--HHH--
T ss_pred -eeeeeeecccc-------c-cccccCCcceEEEeC--CCCEEEEEECcCCceEEEEcccccCCceeeecchh--hcc--
Confidence 111 0111110 0 112235589999988 466788888877667776652 00011110000 000
Q ss_pred cCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCC
Q 001287 228 VDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1107)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~ 281 (1107)
......+.++++....|.+++....+..|..+|...
T Consensus 169 ------------------~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g 204 (255)
T 3qqz_A 169 ------------------QFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG 204 (255)
T ss_dssp ------------------TCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred ------------------ccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC
Confidence 001345678888755666677777778888888764
No 290
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.43 E-value=0.51 Score=52.44 Aligned_cols=197 Identities=13% Similarity=0.024 Sum_probs=119.6
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEe-CCCcEEEEEcCCCeeeee
Q 001287 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLESRSLACC 113 (1107)
Q Consensus 35 ~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s-~d~~I~vWDl~s~~~~~~ 113 (1107)
+...+|.+..+ ..+|..+. ...|+..+.++...............|+|.+..+.|+-+. ..+.|..++...+.....
T Consensus 33 ~d~~~C~~~~~-~~~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~ 110 (349)
T 3v64_C 33 PDRRSCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV 110 (349)
T ss_dssp TTSSCEEESSS-CCEEEEEC-BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred CCCCccccccc-CceeEeec-ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE
Confidence 44567888877 44555554 4568888887766555444445689999998767776665 467899999987754443
Q ss_pred ecc-CCCeEEEEEecCCCEEEEEcC-CCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCC
Q 001287 114 LKW-ESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1107)
Q Consensus 114 ~~~-~~~Vt~l~~~~~~~~l~~g~~-dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~ 191 (1107)
... ......+++++.+..|+..+. .+.|.+.+++. ..... -+... ......+++.|. .+.
T Consensus 111 ~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG---~~~~~--l~~~~------------l~~P~~iavdp~-~g~ 172 (349)
T 3v64_C 111 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG---AHRKV--LLWQS------------LEKPRAIALHPM-EGT 172 (349)
T ss_dssp ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS---CSCEE--EECTT------------CSCEEEEEEETT-TTE
T ss_pred EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCC---CceEE--EEeCC------------CCCcceEEEecC-cCe
Confidence 322 245678999987777776654 56666666553 22111 01111 145788999885 344
Q ss_pred EEEEEECC-CeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEE-
Q 001287 192 RVLIAYEN-ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY- 269 (1107)
Q Consensus 192 ~ll~~~~d-g~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~- 269 (1107)
++.+-..+ +.|..++++......+... .-.....++|. +++..|+.+.
T Consensus 173 ly~td~~~~~~I~r~~~dG~~~~~~~~~-----------------------------~~~~PnGla~d-~~~~~lY~aD~ 222 (349)
T 3v64_C 173 IYWTDWGNTPRIEASSMDGSGRRIIADT-----------------------------HLFWPNGLTID-YAGRRMYWVDA 222 (349)
T ss_dssp EEEEECSSSCEEEEEETTSCSCEESCCS-----------------------------SCSCEEEEEEE-TTTTEEEEEET
T ss_pred EEEeccCCCCEEEEEeCCCCCcEEEEEC-----------------------------CCCCcceEEEe-CCCCEEEEEEC
Confidence 33343344 6677777665432211100 02345678875 7677666664
Q ss_pred cCCcEEEEeCCC
Q 001287 270 IDGDILLWNTST 281 (1107)
Q Consensus 270 ~dG~I~lWd~~~ 281 (1107)
..+.|..+++..
T Consensus 223 ~~~~I~~~~~dG 234 (349)
T 3v64_C 223 KHHVIERANLDG 234 (349)
T ss_dssp TTTEEEEEETTS
T ss_pred CCCEEEEEeCCC
Confidence 456788888753
No 291
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.37 E-value=0.52 Score=58.35 Aligned_cols=161 Identities=13% Similarity=-0.013 Sum_probs=99.6
Q ss_pred CCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCc-----ceeeeCCCCCCEEEEEEEeCCCEEEEEe-CCCcEEEEEcCC
Q 001287 35 PATASILAFDHIQRLLAIAT-LDGRIKVIGGDGI-----EGLLISPSQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLES 107 (1107)
Q Consensus 35 ~~~i~~lafsp~~~~LA~Gs-~dg~I~iw~~~~~-----~~~~~~~h~~~V~~l~fs~d~~~L~S~s-~d~~I~vWDl~s 107 (1107)
...+..|+|++....|.... ..++|+.+++++. ...+....-.....|++.+.++.|+-+. ..+.|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 34577899999666555554 4578988888653 2223333344567899998776666655 467899999987
Q ss_pred Ceeeeeec-cCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEccc
Q 001287 108 RSLACCLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1107)
Q Consensus 108 ~~~~~~~~-~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P 186 (1107)
......+. .-.....|+++|...+|++.+....-+|+.++.+....... +... ...+.+|++.|
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~l---v~~~------------l~~P~GLavD~ 567 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL---VTEN------------IQWPNGITLDL 567 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE---ECSS------------CSCEEEEEEET
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEE---EeCC------------CCCceEEEEec
Confidence 65444442 33468899999998899888743212344444332222211 2211 15689999977
Q ss_pred CCCCCEEEEEE-CCCeEEEEEccCCEE
Q 001287 187 NSSGNRVLIAY-ENALVILWDVSEAQI 212 (1107)
Q Consensus 187 ~~~~~~ll~~~-~dg~V~vwdl~~~~~ 212 (1107)
. ..+|+.+. ....|..+++.....
T Consensus 568 ~--~~~LYwaD~~~~~I~~~d~dG~~~ 592 (791)
T 3m0c_C 568 L--SGRLYWVDSKLHSISSIDVNGGNR 592 (791)
T ss_dssp T--TTEEEEEETTTTEEEEEETTSCSC
T ss_pred C--CCeEEEEeCCCCcEEEEecCCCce
Confidence 4 34466654 456788888876543
No 292
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.31 E-value=0.27 Score=56.56 Aligned_cols=231 Identities=9% Similarity=0.033 Sum_probs=115.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECC---C-cEEEEeCCCcce--eeeCCCCCCEEEEEEEe-CCCEEEEEeCCCcEEEEEc
Q 001287 33 GIPATASILAFDHIQRLLAIATLD---G-RIKVIGGDGIEG--LLISPSQLPYKNLEFLQ-NQGFLISITNDNEIQVWSL 105 (1107)
Q Consensus 33 G~~~~i~~lafsp~~~~LA~Gs~d---g-~I~iw~~~~~~~--~~~~~h~~~V~~l~fs~-d~~~L~S~s~d~~I~vWDl 105 (1107)
+-...+..++|+++++++++-... . .+..++...... .... .-..-..+++.+ ++...++-..++.|..+|.
T Consensus 179 ~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~ 257 (433)
T 4hw6_A 179 TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDP 257 (433)
T ss_dssp CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECT
T ss_pred cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEEC
Confidence 334558899999999944443321 1 133333221110 1111 122345678888 5444444445778999999
Q ss_pred CCCeeeeee-c--cCCCeEEEEEecCCCEEEEEcC-CCcEEEEEeecCCCceeecceeecccccccccCCC-----CCCC
Q 001287 106 ESRSLACCL-K--WESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFP-----LLSH 176 (1107)
Q Consensus 106 ~s~~~~~~~-~--~~~~Vt~l~~~~~~~~l~~g~~-dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~-----~~~~ 176 (1107)
.++.....+ . ....-..++++|++++|++.+. ++.|+.++++...+.+.. ++.+.+.. ...+.. ....
T Consensus 258 ~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~-~~~~ag~~--g~~g~~dg~~~~a~~ 334 (433)
T 4hw6_A 258 ATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAV-PYIVCGQH--SSPGWVDGMGTGARL 334 (433)
T ss_dssp TTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCC-CEEEEECT--TCCCCBCEEGGGSBC
T ss_pred CCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCc-EEEEEecC--CCCccCCCcccceEE
Confidence 877663222 1 1223347999999998888775 466666666644444321 12222210 000000 0112
Q ss_pred CCeEEEEccc-------CCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCC
Q 001287 177 QPVVGVLPHP-------NSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEE 249 (1107)
Q Consensus 177 ~~V~~v~f~P-------~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1107)
.....+++.+ ..++.++++-+.++.|+.++. .+.+..+.+.... ...+..+........-
T Consensus 335 ~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~------------~~~G~~dG~~~~~~~~ 401 (433)
T 4hw6_A 335 WGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVTTYAGRGNS------------REWGYVDGELRSQALF 401 (433)
T ss_dssp SSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEEEEECCCTT------------CSSCCBCEETTTTCBC
T ss_pred cCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEEEEEeCCCC------------CccccCCCccccccEe
Confidence 4577788821 125664444445678888885 4566555543100 0000000000000112
Q ss_pred CceeEEEeecCCCCEEEEEEcCCcEEEEeCC
Q 001287 250 KEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 250 ~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~ 280 (1107)
.....+++..++|..+++=..++.|+.++++
T Consensus 402 ~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 402 NHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp SSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 3456788642556555555566778777653
No 293
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.18 E-value=0.14 Score=59.04 Aligned_cols=158 Identities=12% Similarity=0.084 Sum_probs=100.3
Q ss_pred CEEEEEEEe-CCCEEEEEeCCCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCC---cEEEEEeecCCCce
Q 001287 78 PYKNLEFLQ-NQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENG---LMSVIKYDADEGKL 153 (1107)
Q Consensus 78 ~V~~l~fs~-d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg---~V~vw~~d~~~~~l 153 (1107)
.-..|+|+| +++.|..+...+.|..+|+.++.+............+++++++++|++.+..+ ...++.++.. +.+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cce
Confidence 357899997 56778777766889999999887766655556789999999999888887522 2233334332 222
Q ss_pred eecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCC
Q 001287 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSE 233 (1107)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~ 233 (1107)
... ..+.. ...+.+++++|. ++.++++-..++.|..|+..++....+... .
T Consensus 217 ~~~-~~l~~-------------~~~p~giavdp~-~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~-------------~- 267 (430)
T 3tc9_A 217 KVI-TELTK-------------GQNCNGAETHPI-NGELYFNSWNAGQVFRYDFTTQETTPLFTI-------------Q- 267 (430)
T ss_dssp CSE-EEEEE-------------CSSCCCEEECTT-TCCEEEEETTTTEEEEEETTTTEEEEEEEC-------------S-
T ss_pred eee-eeecc-------------CCCceEEEEeCC-CCEEEEEECCCCEEEEEECCCCcEEEEEEc-------------C-
Confidence 210 01110 034667788774 566455555678899999887765322211 0
Q ss_pred CCCccccCCCCCCCCCCceeEEEeecCCCCEEEEE-EcCCcEEEEeCC
Q 001287 234 GDSTFLEGISEHQPEEKEISALCWASSSGSILAVG-YIDGDILLWNTS 280 (1107)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg-~~dG~I~lWd~~ 280 (1107)
....-..++|. |+|++|+.. ...+.|..++..
T Consensus 268 --------------~~~~P~gia~~-pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 268 --------------DSGWEFHIQFH-PSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp --------------SSSCCEEEEEC-TTSSEEEEEETTTTEEEEEEEE
T ss_pred --------------CCCcceeEEEc-CCCCEEEEEECCCCEEEEEeCC
Confidence 01234568875 999965555 456788887764
No 294
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.16 E-value=0.77 Score=51.82 Aligned_cols=194 Identities=13% Similarity=0.022 Sum_probs=115.1
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEe-CCCcEEEEEcCCCeeeeeec
Q 001287 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLESRSLACCLK 115 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s-~d~~I~vWDl~s~~~~~~~~ 115 (1107)
.-+|-+.++ ..+|..+. ...|+.++.++.....+.........|+|.+.++.|+-+. ..+.|..|++..+.......
T Consensus 78 ~~~C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 155 (386)
T 3v65_B 78 RRSCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 155 (386)
T ss_dssp SSCEEECSS-CCEEEEEC-BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred CCeECCccc-cceeEeec-CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence 455666666 44454443 4678888887766554444455688999998767666655 46789999998876444332
Q ss_pred c-CCCeEEEEEecCCCEEEEEcC-CCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEE
Q 001287 116 W-ESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1107)
Q Consensus 116 ~-~~~Vt~l~~~~~~~~l~~g~~-dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~l 193 (1107)
. ......+++++.+..|+..+. .+.|.+.+++ +..... .+... ......|+..|. .+. |
T Consensus 156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~d---g~~~~~--l~~~~------------l~~P~giavdp~-~g~-l 216 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD---GAHRKV--LLWQS------------LEKPRAIALHPM-EGT-I 216 (386)
T ss_dssp SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTT---SCSCEE--EECSS------------CSCEEEEEEETT-TTE-E
T ss_pred CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCC---CCceEE--eecCC------------CCCCcEEEEEcC-CCe-E
Confidence 2 234577899987777776654 4555444443 222111 01111 145788999874 344 4
Q ss_pred EEEE-CC-CeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEE-c
Q 001287 194 LIAY-EN-ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY-I 270 (1107)
Q Consensus 194 l~~~-~d-g~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~-~ 270 (1107)
+.+. .. +.|..+++.......+... .-.....++|. |++..|+.+. .
T Consensus 217 y~td~~~~~~I~r~~~dG~~~~~~~~~-----------------------------~~~~PnGlavd-~~~~~lY~aD~~ 266 (386)
T 3v65_B 217 YWTDWGNTPRIEASSMDGSGRRIIADT-----------------------------HLFWPNGLTID-YAGRRMYWVDAK 266 (386)
T ss_dssp EEEECSSSCEEEEEETTSCSCEEEECS-----------------------------SCSCEEEEEEE-GGGTEEEEEETT
T ss_pred EEeccCCCCEEEEEeCCCCCcEEEEEC-----------------------------CCCCeeeEEEe-CCCCEEEEEECC
Confidence 4443 34 5677777665432222110 02235678875 6666666654 4
Q ss_pred CCcEEEEeCCC
Q 001287 271 DGDILLWNTST 281 (1107)
Q Consensus 271 dG~I~lWd~~~ 281 (1107)
.+.|..+++..
T Consensus 267 ~~~I~~~d~dG 277 (386)
T 3v65_B 267 HHVIERANLDG 277 (386)
T ss_dssp TTEEEEECTTS
T ss_pred CCEEEEEeCCC
Confidence 56788888753
No 295
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.08 E-value=0.2 Score=56.03 Aligned_cols=162 Identities=19% Similarity=0.265 Sum_probs=97.3
Q ss_pred EeCCCEEEEEeCCCcEEEEEcCCCeeeeeeccC-----CCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCC--------
Q 001287 85 LQNQGFLISITNDNEIQVWSLESRSLACCLKWE-----SNITAFSVISGSHFMYIGDENGLMSVIKYDADEG-------- 151 (1107)
Q Consensus 85 s~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~-----~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~-------- 151 (1107)
..++..|+.+- ++.||.-++.....-+.+..+ ..|..+..+|.|.+|++.+.. .|.|..+.....
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccc
Confidence 34555555554 678888887744333343332 368889999999999998655 577877763110
Q ss_pred -ceeecceeecccccccccCCCCCCCCCeEEEEcccCC-CCCEEEEEECCCeEEEEEccCC--EEEEEeCCccccccccc
Q 001287 152 -KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS-SGNRVLIAYENALVILWDVSEA--QIIFVGGGKDLQLKDGV 227 (1107)
Q Consensus 152 -~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~-~~~~ll~~~~dg~V~vwdl~~~--~~~~~~g~~~~~~~~~~ 227 (1107)
.+....|.+... ......+|..+.|||.. .+..|++-..|+.|++||+... +.. .....
T Consensus 107 ~~~q~~ty~l~~~--------~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~-------- 169 (452)
T 3pbp_A 107 DAFQIFHYSIDEE--------EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKP-------- 169 (452)
T ss_dssp HTTEEEEEEGGGC--------C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCC--------
T ss_pred cccceeEEEcCCc--------ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhcc--------
Confidence 011111222210 01123679999999953 3556999999999999999862 122 11110
Q ss_pred cCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEE--cCCcEEEEe
Q 001287 228 VDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY--IDGDILLWN 278 (1107)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~--~dG~I~lWd 278 (1107)
....|. ......|.++||. ++|-.|+... ..|.|+-.-
T Consensus 170 -------~~~fg~-----d~~~~ev~S~~Fg-~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 170 -------NNSFGL-----DARVNDITDLEFS-KDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp -------CSEEES-----CSSCCCEEEEEEC-TTSSCEEEEECTTSCEEEEES
T ss_pred -------ccccCC-----CcccceEEEEEEc-CCCcEEEEEecCCCCCEEEEC
Confidence 001110 1114689999975 6777777755 778776543
No 296
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.04 E-value=0.21 Score=54.24 Aligned_cols=158 Identities=10% Similarity=0.110 Sum_probs=105.0
Q ss_pred eEEEEEcCCCCEEEEEE-CCCcEEEEeCCCcc-eeeeCCC-----CC--CEEEEEE---EeCCCEEEEEeC---------
Q 001287 38 ASILAFDHIQRLLAIAT-LDGRIKVIGGDGIE-GLLISPS-----QL--PYKNLEF---LQNQGFLISITN--------- 96 (1107)
Q Consensus 38 i~~lafsp~~~~LA~Gs-~dg~I~iw~~~~~~-~~~~~~h-----~~--~V~~l~f---s~d~~~L~S~s~--------- 96 (1107)
..+++|++....+-+++ ..|.|..|+..... .....++ +. .+..|.| .++++.++.+..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 45689998777777777 68999999986432 2222322 11 3688999 577555554331
Q ss_pred ----CCcEEEEEcC---CCeeeeeecc--------------CCCeEEEEEecCCCEEEEEcCC-CcEEEEEeecCCCcee
Q 001287 97 ----DNEIQVWSLE---SRSLACCLKW--------------ESNITAFSVISGSHFMYIGDEN-GLMSVIKYDADEGKLF 154 (1107)
Q Consensus 97 ----d~~I~vWDl~---s~~~~~~~~~--------------~~~Vt~l~~~~~~~~l~~g~~d-g~V~vw~~d~~~~~l~ 154 (1107)
++.|..+|+. +++.+..... ......++++++++.-++++.. +. ||.++.+...+.
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~--I~rV~pdG~~~~ 172 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA--IARVSADGKTVS 172 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE--EEEECTTSCCEE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe--EEEEeCCCCEEe
Confidence 5779999999 7776654432 1247889999999988888777 74 688887644333
Q ss_pred ecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccC
Q 001287 155 QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE 209 (1107)
Q Consensus 155 ~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~ 209 (1107)
++...... .......++|+++| ++.+|++....|.+..+|+..
T Consensus 173 --~~~~~~~~--------~~~~~G~nGIv~~p--dg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 173 --TFAWESGN--------GGQRPGYSGITFDP--HSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp --EEEECCCC--------SSSCCSCSEEEEET--TTTEEEEESSSSSEEEEECSS
T ss_pred --eeeecCCC--------cccccCcceEEEeC--CCCEEEEEcCCCeEEEEcCCC
Confidence 22221100 01113477999998 788888888899999999874
No 297
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=95.97 E-value=0.54 Score=51.68 Aligned_cols=197 Identities=10% Similarity=0.055 Sum_probs=105.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcE-EEEeCC-CcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEc--CCCe
Q 001287 34 IPATASILAFDHIQRLLAIATLDGRI-KVIGGD-GIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL--ESRS 109 (1107)
Q Consensus 34 ~~~~i~~lafsp~~~~LA~Gs~dg~I-~iw~~~-~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl--~s~~ 109 (1107)
+|..+..+++.++++++|++. +|.| +-.|.- .-+. ...++...+..+.|.+++.+++.+...+..+-+|- .+-+
T Consensus 120 ~~~~~~~i~~~~~~~~~~~~~-~g~v~~S~DgG~tW~~-~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~ 197 (327)
T 2xbg_A 120 LPGSPRLIKALGNGSAEMITN-VGAIYRTKDSGKNWQA-LVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWE 197 (327)
T ss_dssp CSSCEEEEEEEETTEEEEEET-TCCEEEESSTTSSEEE-EECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCE
T ss_pred CCCCeEEEEEECCCCEEEEeC-CccEEEEcCCCCCCEE-eecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCcee
Confidence 455677788877788777764 5555 333422 2222 33455668999999998766655543333444442 2223
Q ss_pred eeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCC
Q 001287 110 LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1107)
Q Consensus 110 ~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~ 189 (1107)
.+. ......+..+.+.+++..+++ ..+|.+++.. .+.+.--.. ...+. ......+.++.+.| +
T Consensus 198 ~~~-~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~--~D~G~tW~~-~~~~~----------~~~~~~~~~v~~~~--~ 260 (327)
T 2xbg_A 198 PHN-RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSD--PDNSENWGE-LLSPL----------RRNSVGFLDLAYRT--P 260 (327)
T ss_dssp EEE-CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEECC-CBCTT----------SSCCSCEEEEEESS--S
T ss_pred ECC-CCCCCccceeEECCCCCEEEE-eCCceEEEec--CCCCCeeEe-ccCCc----------ccCCcceEEEEecC--C
Confidence 332 234457888999888766544 4567655432 111211100 11110 00113588899876 4
Q ss_pred CCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEE
Q 001287 190 GNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1107)
Q Consensus 190 ~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~ 269 (1107)
+. ++++..+|.| .+..+.++.-..... . ......+.++.|. ++ ..+++++
T Consensus 261 ~~-~~~~g~~g~i-~~S~DgG~tW~~~~~-------------~-------------~~~~~~~~~v~~~-~~-~~~~~~G 310 (327)
T 2xbg_A 261 NE-VWLAGGAGAL-LCSQDGGQTWQQDVD-------------V-------------KKVPSNFYKILFF-SP-DQGFILG 310 (327)
T ss_dssp SC-EEEEESTTCE-EEESSTTSSCEECGG-------------G-------------TTSSSCCCEEEEE-ET-TEEEEEC
T ss_pred CE-EEEEeCCCeE-EEeCCCCcccEEcCc-------------c-------------CCCCCCeEEEEEE-CC-CceEEEc
Confidence 65 5666667765 444444422111100 0 0003456778875 44 4577777
Q ss_pred cCCcEEEEeC
Q 001287 270 IDGDILLWNT 279 (1107)
Q Consensus 270 ~dG~I~lWd~ 279 (1107)
.+|.|.-++-
T Consensus 311 ~~G~i~~~~~ 320 (327)
T 2xbg_A 311 QKGILLRYVT 320 (327)
T ss_dssp STTEEEEECC
T ss_pred CCceEEEEcC
Confidence 8998877664
No 298
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=95.74 E-value=0.0016 Score=66.07 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHHHHHHhhcccccc
Q 001287 1054 SSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRKWWK 1106 (1107)
Q Consensus 1054 ~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~~~~~~~ 1106 (1107)
-..+..+=+++.||||||+.|.+||++|...|+.|-.-|++| +.+-||+
T Consensus 147 ~~im~~ni~~vl~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l----~~~~~~~ 195 (196)
T 2nut_C 147 QRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYL----NMRSTYA 195 (196)
T ss_dssp --CCEEEHHHHC-----------------------------------------
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhc
Confidence 456667788999999999999999999999999999999665 4567986
No 299
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=95.65 E-value=0.76 Score=52.76 Aligned_cols=154 Identities=13% Similarity=0.116 Sum_probs=90.7
Q ss_pred CeEEEEEcCC--CCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCC----c-EEEEEcCCCe
Q 001287 37 TASILAFDHI--QRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDN----E-IQVWSLESRS 109 (1107)
Q Consensus 37 ~i~~lafsp~--~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~----~-I~vWDl~s~~ 109 (1107)
.+..++++|+ ...|.++...++|+.++.....+............|+|++++. |+.+...+ . +...+...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCe
Confidence 4668999995 4555555544899999986666665555555689999999988 55544322 2 3333322221
Q ss_pred e-eeeeccCCCeEEEEEecCCCEEEEEcC-CCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccC
Q 001287 110 L-ACCLKWESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1107)
Q Consensus 110 ~-~~~~~~~~~Vt~l~~~~~~~~l~~g~~-dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~ 187 (1107)
. ...+..-.....+++++....|++++. ++ +|+.++...+.+....+.... ......++|+|
T Consensus 219 ~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~--~V~~~d~~~g~~~~~~~~~~~-------------~~~~~~ia~dp- 282 (433)
T 4hw6_A 219 TERLSLCNARGAKTCAVHPQNGKIYYTRYHHA--MISSYDPATGTLTEEEVMMDT-------------KGSNFHIVWHP- 282 (433)
T ss_dssp CCEEEEEECSSBCCCEECTTTCCEEECBTTCS--EEEEECTTTCCEEEEEEECSC-------------CSSCEEEEECT-
T ss_pred eccccccccCCCCEEEEeCCCCeEEEEECCCC--EEEEEECCCCeEEEEEeccCC-------------CCCcccEEEeC-
Confidence 1 011222234566888995556666654 45 456666655555211111111 02345799988
Q ss_pred CCCCEEEEEE-CCCeEEEEEcc
Q 001287 188 SSGNRVLIAY-ENALVILWDVS 208 (1107)
Q Consensus 188 ~~~~~ll~~~-~dg~V~vwdl~ 208 (1107)
++++|+++. .++.|..+++.
T Consensus 283 -dG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 283 -TGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp -TSSEEEEEETTTTEEEEEEBC
T ss_pred -CCCEEEEEeCCCCEEEEEeCC
Confidence 577565555 46788887765
No 300
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.64 E-value=0.84 Score=54.67 Aligned_cols=73 Identities=10% Similarity=0.081 Sum_probs=46.2
Q ss_pred EEEEEeCCCEEEEEeCC----------------CcEEEEEcCCCeeeeeeccCC----------CeEEEEEe-cCC---C
Q 001287 81 NLEFLQNQGFLISITND----------------NEIQVWSLESRSLACCLKWES----------NITAFSVI-SGS---H 130 (1107)
Q Consensus 81 ~l~fs~d~~~L~S~s~d----------------~~I~vWDl~s~~~~~~~~~~~----------~Vt~l~~~-~~~---~ 130 (1107)
..++.+....|+.++.+ +.|..+|.++++++..++... ...-+... .++ +
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~ 324 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARK 324 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEE
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEE
Confidence 35566666777776654 379999999999887664321 11122222 456 5
Q ss_pred EEEEEcCCCcEEEEEeecCCCceee
Q 001287 131 FMYIGDENGLMSVIKYDADEGKLFQ 155 (1107)
Q Consensus 131 ~l~~g~~dg~V~vw~~d~~~~~l~~ 155 (1107)
.++.++.+|.+++++ ..+|+++-
T Consensus 325 ~v~~~~~~G~l~~lD--~~tG~~lw 347 (599)
T 1w6s_A 325 LLTHPDRNGIVYTLD--RTDGALVS 347 (599)
T ss_dssp EEEEECTTSEEEEEE--TTTCCEEE
T ss_pred EEEEECCCcEEEEEE--CCCCCEee
Confidence 677889999775555 55576653
No 301
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=95.59 E-value=1.3 Score=51.25 Aligned_cols=157 Identities=14% Similarity=0.153 Sum_probs=93.0
Q ss_pred CeEEEEEcCC-CC-EEEEEECCCcEEEEeCCCcceeeeCCC-C---CCEEEEEE-------EeCCCEEEEEeCCC-----
Q 001287 37 TASILAFDHI-QR-LLAIATLDGRIKVIGGDGIEGLLISPS-Q---LPYKNLEF-------LQNQGFLISITNDN----- 98 (1107)
Q Consensus 37 ~i~~lafsp~-~~-~LA~Gs~dg~I~iw~~~~~~~~~~~~h-~---~~V~~l~f-------s~d~~~L~S~s~d~----- 98 (1107)
....|+|+|. .. +.++-...+.|+++|.....+..+..- . .....|+| ++++.+|+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4678999993 44 444444457899999877666544332 1 24799999 99998777777654
Q ss_pred --cEEEEEcCC-Ceee-----eeeccCCCeEEEEEecCCCEEEEEc-CCCcEEEEEeec-----CCCce-----------
Q 001287 99 --EIQVWSLES-RSLA-----CCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDA-----DEGKL----------- 153 (1107)
Q Consensus 99 --~I~vWDl~s-~~~~-----~~~~~~~~Vt~l~~~~~~~~l~~g~-~dg~V~vw~~d~-----~~~~l----------- 153 (1107)
.|.+.+... +... ..+.--.....++++|++.+|++.. .++.|+.++++. .++.+
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~ 299 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT 299 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence 266666444 2221 1121112345778899766666554 667666666551 02332
Q ss_pred -eecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEE-CCCeEEEEEccC
Q 001287 154 -FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVSE 209 (1107)
Q Consensus 154 -~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~-~dg~V~vwdl~~ 209 (1107)
.+. +.++ ...+...|+|+| +++.|+++. .+..|+.++...
T Consensus 300 ~~~l-~~~~-------------~~~~p~~ia~~p--~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 300 FKQL-FTIA-------------DPSWEFQIFIHP--TGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp EEEE-EECS-------------SSSCCEEEEECT--TSSEEEEEETTTTEEEEEEEET
T ss_pred ccee-EecC-------------CCCCceEEEEcC--CCCEEEEEeCCCCEEEEEecCC
Confidence 010 1121 114578999988 677556554 566788766543
No 302
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=95.57 E-value=2.2 Score=46.39 Aligned_cols=183 Identities=11% Similarity=-0.061 Sum_probs=108.0
Q ss_pred EEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeC-CCcEEEEEcCC----Ceeeeeec-cCCCeEE
Q 001287 49 LLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN-DNEIQVWSLES----RSLACCLK-WESNITA 122 (1107)
Q Consensus 49 ~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~-d~~I~vWDl~s----~~~~~~~~-~~~~Vt~ 122 (1107)
+|..+.. ..|+..++++.+...+...-.....++|.+.++.|+-+.. ++.|..+|+.. ......+. .-.....
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 81 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEEECC-CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence 4445443 5688889877655444444456789999987677766654 67899999886 22222222 2245678
Q ss_pred EEEecCCCEEEEEc-CCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEEC-C-
Q 001287 123 FSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-N- 199 (1107)
Q Consensus 123 l~~~~~~~~l~~g~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~-d- 199 (1107)
+++++.+..|++.+ .++.|.+.+++. ..... -+... ...+..++..|. .+ .|+.+.. .
T Consensus 82 lavd~~~~~ly~~d~~~~~I~~~~~~g---~~~~~--~~~~~------------~~~P~~iavdp~-~g-~ly~~d~~~~ 142 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTVSVADTKG---VKRKT--LFREN------------GSKPRAIVVDPV-HG-FMYWTDWGTP 142 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTS---SSEEE--EEECT------------TCCEEEEEEETT-TT-EEEEEECSSS
T ss_pred EEEeecCCeEEEEECCCCEEEEEeCCC---CceEE--EEECC------------CCCcceEEeCCC-CC-EEEEEccCCC
Confidence 99998777777664 567776666542 22211 01111 145788999874 34 3555543 2
Q ss_pred CeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEE-cCCcEEEEe
Q 001287 200 ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY-IDGDILLWN 278 (1107)
Q Consensus 200 g~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~-~dG~I~lWd 278 (1107)
+.|..+++.......+... .-.....++|. +++..|+.+. ..+.|..+|
T Consensus 143 ~~I~~~~~dG~~~~~~~~~-----------------------------~~~~P~gla~d-~~~~~lY~~D~~~~~I~~~d 192 (316)
T 1ijq_A 143 AKIKKGGLNGVDIYSLVTE-----------------------------NIQWPNGITLD-LLSGRLYWVDSKLHSISSID 192 (316)
T ss_dssp CEEEEEETTSCCEEEEECS-----------------------------SCSCEEEEEEE-TTTTEEEEEETTTTEEEEEE
T ss_pred CeEEEEcCCCCCeEEEEEC-----------------------------CCCCceEEEEe-ccCCEEEEEECCCCeEEEEe
Confidence 6777777765433222110 02345678876 7777776665 456888888
Q ss_pred CCC
Q 001287 279 TST 281 (1107)
Q Consensus 279 ~~~ 281 (1107)
+..
T Consensus 193 ~dg 195 (316)
T 1ijq_A 193 VNG 195 (316)
T ss_dssp TTS
T ss_pred cCC
Confidence 863
No 303
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=95.52 E-value=0.58 Score=58.04 Aligned_cols=111 Identities=10% Similarity=-0.016 Sum_probs=70.2
Q ss_pred EEEEEcCCCCEEEEEECC-----CcEEEEeCCCcc----eeeeCCCCCCEEEEEEEeCCCEEEEEeC---CCcEEEEEcC
Q 001287 39 SILAFDHIQRLLAIATLD-----GRIKVIGGDGIE----GLLISPSQLPYKNLEFLQNQGFLISITN---DNEIQVWSLE 106 (1107)
Q Consensus 39 ~~lafsp~~~~LA~Gs~d-----g~I~iw~~~~~~----~~~~~~h~~~V~~l~fs~d~~~L~S~s~---d~~I~vWDl~ 106 (1107)
..++|+||++.|+....| ..|+++++.+.+ .+....+......+.|||||.+|+..+. ...|.++|+.
T Consensus 224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 458899999988888765 358888885532 2233344456778999999998887663 3469999998
Q ss_pred CC--ee--eeeec-cCCCeEEEEEecCCCEEEEEcCC--CcEEEEEeecC
Q 001287 107 SR--SL--ACCLK-WESNITAFSVISGSHFMYIGDEN--GLMSVIKYDAD 149 (1107)
Q Consensus 107 s~--~~--~~~~~-~~~~Vt~l~~~~~~~~l~~g~~d--g~V~vw~~d~~ 149 (1107)
++ .. ..... ..+......|+.++.++++...+ +..+||.++..
T Consensus 304 ~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~ 353 (751)
T 2xe4_A 304 KGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRG 353 (751)
T ss_dssp SCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETT
T ss_pred CCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCC
Confidence 75 22 22222 23444555544444455555554 55566766654
No 304
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=95.24 E-value=0.055 Score=66.54 Aligned_cols=158 Identities=13% Similarity=-0.047 Sum_probs=93.6
Q ss_pred CCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCC----ccee-eeCCCCCCEEEEEEEeCCCEEEEE-eCCCcEEEEEcCCC
Q 001287 36 ATASILAFDHIQRLLAIAT-LDGRIKVIGGDG----IEGL-LISPSQLPYKNLEFLQNQGFLISI-TNDNEIQVWSLESR 108 (1107)
Q Consensus 36 ~~i~~lafsp~~~~LA~Gs-~dg~I~iw~~~~----~~~~-~~~~h~~~V~~l~fs~d~~~L~S~-s~d~~I~vWDl~s~ 108 (1107)
..+..++|++.+..|.... ..++|+.+++++ .... .....-.....|++.+.++.|+.+ ...+.|.+.|+...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 4567899999877766654 458899998875 2222 221112234568888654555444 45678999998876
Q ss_pred eeeeeecc-CCCeEEEEEecCCCEEEEEcCC--CcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcc
Q 001287 109 SLACCLKW-ESNITAFSVISGSHFMYIGDEN--GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1107)
Q Consensus 109 ~~~~~~~~-~~~Vt~l~~~~~~~~l~~g~~d--g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~ 185 (1107)
.....+.. ......++++|.+.+|++.+.. +.|++++++. ..... +.... .....+|++.
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG---~~~~~---l~~~~-----------l~~PnGlavd 548 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG---VDIYS---LVTEN-----------IQWPNGITLD 548 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS---CCCCE---ESCSS-----------CSSCCCEEEC
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC---CCeeE---EEeCC-----------CCCccEEEEe
Confidence 54444322 2456788999988888877643 5565544442 21110 11111 1457788998
Q ss_pred cCCCCCEEEEEECCCeEEEEEccCCE
Q 001287 186 PNSSGNRVLIAYENALVILWDVSEAQ 211 (1107)
Q Consensus 186 P~~~~~~ll~~~~dg~V~vwdl~~~~ 211 (1107)
|. .+.++++-+..+.|.++|+....
T Consensus 549 ~~-~~~LY~aD~~~~~I~~~d~dG~~ 573 (699)
T 1n7d_A 549 LL-SGRLYWVDSKLHSISSIDVNGGN 573 (699)
T ss_dssp TT-TCCEEEEETTTTEEEEECSSSSC
T ss_pred cc-CCEEEEEecCCCeEEEEccCCCc
Confidence 74 34434444456788888887643
No 305
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=95.23 E-value=0.00039 Score=70.01 Aligned_cols=48 Identities=23% Similarity=0.339 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHHHHHHhhcccccc
Q 001287 1055 SVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRKWWK 1106 (1107)
Q Consensus 1055 ~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~~~~~~~ 1106 (1107)
..+..+=+++.||||||+.|.+||++|++.|+.|-..|++|-++| |||
T Consensus 139 ~im~~Ni~~vl~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~m----wwk 186 (189)
T 4b93_A 139 GIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAM----CMK 186 (189)
T ss_dssp TCCEECCCCBCTTSSBCCCCEETTCC--------------------------
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 344455577889999999999999999999999999999887665 996
No 306
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=94.87 E-value=0.54 Score=54.47 Aligned_cols=116 Identities=22% Similarity=0.268 Sum_probs=75.1
Q ss_pred EEEEEEEe-CCCEEEEEeC-CCcEEEEEcCCCeeeeeeccC----CCeEEEEE-------ecCCCEEEEEcCCC-----c
Q 001287 79 YKNLEFLQ-NQGFLISITN-DNEIQVWSLESRSLACCLKWE----SNITAFSV-------ISGSHFMYIGDENG-----L 140 (1107)
Q Consensus 79 V~~l~fs~-d~~~L~S~s~-d~~I~vWDl~s~~~~~~~~~~----~~Vt~l~~-------~~~~~~l~~g~~dg-----~ 140 (1107)
-..|+|.| +...|+.+.. .+.|++.|+.++.+....... .....++| ++++++|++.+..+ .
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 46899998 4566666554 467999999998887665432 35899999 99999888887665 2
Q ss_pred EEEEEeecCC-Cceeecc--eeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEcc
Q 001287 141 MSVIKYDADE-GKLFQLP--YNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVS 208 (1107)
Q Consensus 141 V~vw~~d~~~-~~l~~~~--~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~ 208 (1107)
..|..++... +.+...+ ..+.. . ....+++.+|. ++.++++-..++.|..+|+.
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~~-~------------~~p~giavdp~-~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIAA-Y------------KQCNGATIHPI-NGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEEE-E------------SCCCCEEECTT-TCCEEEEETTTTEEEEECHH
T ss_pred ceEEEEecCCCCceeecccceeecc-C------------CCceEEEEcCC-CCeEEEEECCCCEEEEEecc
Confidence 3344444322 2332100 01111 1 33567788875 56656677788889999987
No 307
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=94.78 E-value=5.3 Score=45.06 Aligned_cols=184 Identities=11% Similarity=-0.044 Sum_probs=110.5
Q ss_pred CEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeC-CCcEEEEEcCCCe----eeeeec-cCCCeE
Q 001287 48 RLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN-DNEIQVWSLESRS----LACCLK-WESNIT 121 (1107)
Q Consensus 48 ~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~-d~~I~vWDl~s~~----~~~~~~-~~~~Vt 121 (1107)
.+|.... ...|+..++++.....+...-..+..|+|.+..+.|.-+.. .+.|..+++.... ...... ......
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred ceeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 3555554 47899999987766555556667899999987677766654 6779999987632 222222 335678
Q ss_pred EEEEecCCCEEEEEcC-CCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEE-C-
Q 001287 122 AFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-E- 198 (1107)
Q Consensus 122 ~l~~~~~~~~l~~g~~-dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~-~- 198 (1107)
.+++++.+..|++.+. .+.|.+.+++ ....... +... ...+.+|+..|. .+ +|+.+. .
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~--g~~~~~l---~~~~------------~~~P~~iavdp~-~g-~ly~td~~~ 223 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKTL---FREN------------GSKPRAIVVDPV-HG-FMYWTDWGT 223 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTT--TCSEEEE---EECS------------SCCEEEEEEETT-TT-EEEEEECSS
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCC--CCceEEE---EeCC------------CCCcceEEEecc-cC-eEEEEeCCC
Confidence 9999987777776654 5655554443 2222111 1111 145789999884 34 355544 2
Q ss_pred CCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEE-cCCcEEEE
Q 001287 199 NALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY-IDGDILLW 277 (1107)
Q Consensus 199 dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~-~dG~I~lW 277 (1107)
.+.|...+++......+... .-.....+++. +++..|+.+. ..+.|...
T Consensus 224 ~~~I~~~~~dG~~~~~~~~~-----------------------------~l~~P~glavd-~~~~~lY~aD~~~~~I~~~ 273 (400)
T 3p5b_L 224 PAKIKKGGLNGVDIYSLVTE-----------------------------NIQWPNGITLD-LLSGRLYWVDSKLHSISSI 273 (400)
T ss_dssp SCCEEEEETTSCSCEEEECS-----------------------------SCSCEEEEEEE-TTTTEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCCCCccEEEEEC-----------------------------CCCceEEEEEE-eCCCEEEEEECCCCEEEEE
Confidence 36677777765433222110 02345678875 7777777665 45678888
Q ss_pred eCCC
Q 001287 278 NTST 281 (1107)
Q Consensus 278 d~~~ 281 (1107)
|+..
T Consensus 274 d~dG 277 (400)
T 3p5b_L 274 DVNG 277 (400)
T ss_dssp ETTS
T ss_pred eCCC
Confidence 8754
No 308
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=94.30 E-value=3.8 Score=50.70 Aligned_cols=194 Identities=12% Similarity=-0.018 Sum_probs=113.4
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEe-CCCcEEEEEcCCC----eee
Q 001287 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLESR----SLA 111 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s-~d~~I~vWDl~s~----~~~ 111 (1107)
.-+|.+.++.. +|... ....|+..+++......+......+..|+|.+..++|+-+. ..+.|..+++... ...
T Consensus 386 ~~~C~~~~~~p-~Ll~a-n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~ 463 (791)
T 3m0c_C 386 TKACKAVGSIA-YLFFT-NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD 463 (791)
T ss_dssp CCCCEETTSCC-EEEEE-CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE
T ss_pred Cceeeeccccc-ccccc-cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCccee
Confidence 34555555433 44443 34668888887666555555556788999998666666555 4577999998763 222
Q ss_pred eeec-cCCCeEEEEEecCCCEEEEEcC-CCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCC
Q 001287 112 CCLK-WESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1107)
Q Consensus 112 ~~~~-~~~~Vt~l~~~~~~~~l~~g~~-dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~ 189 (1107)
..+. .-.....|++++.++.||+.+. .+.|.+.+++ +..... +.... ...+.+|++.|. .
T Consensus 464 ~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld---G~~~~~---l~~~~-----------l~~P~gIaVDp~-~ 525 (791)
T 3m0c_C 464 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK---GVKRKT---LFREN-----------GSKPRAIVVDPV-H 525 (791)
T ss_dssp EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT---SSSEEE---EEECT-----------TCCEEEEEEETT-T
T ss_pred EEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC---CCeEEE---EEeCC-----------CCCcceEEEecC-C
Confidence 2222 3345778999998888887764 5666665554 222211 11111 145889999884 3
Q ss_pred CCEEEEEE-CC-CeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEE
Q 001287 190 GNRVLIAY-EN-ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1107)
Q Consensus 190 ~~~ll~~~-~d-g~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~s 267 (1107)
+. |+.+. .+ +.|.+.++.......+... . -.....|+.. +.+..|+.
T Consensus 526 g~-LYwtD~g~~~~I~~~~~dG~~~~~lv~~-~----------------------------l~~P~GLavD-~~~~~LYw 574 (791)
T 3m0c_C 526 GF-MYWTDWGTPAKIKKGGLNGVDIYSLVTE-N----------------------------IQWPNGITLD-LLSGRLYW 574 (791)
T ss_dssp TE-EEEEECSSSCEEEEEETTSCCEEEEECS-S----------------------------CSCEEEEEEE-TTTTEEEE
T ss_pred CC-EEEecCCCCCeEEEEecCCCceEEEEeC-C----------------------------CCCceEEEEe-cCCCeEEE
Confidence 44 55544 33 6788888876544333211 0 2345667754 66666666
Q ss_pred EE-cCCcEEEEeCCC
Q 001287 268 GY-IDGDILLWNTST 281 (1107)
Q Consensus 268 g~-~dG~I~lWd~~~ 281 (1107)
+. ..+.|...++..
T Consensus 575 aD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 575 VDSKLHSISSIDVNG 589 (791)
T ss_dssp EETTTTEEEEEETTS
T ss_pred EeCCCCcEEEEecCC
Confidence 64 345677777753
No 309
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=94.08 E-value=1.4 Score=48.41 Aligned_cols=153 Identities=11% Similarity=0.035 Sum_probs=90.3
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC--CCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCe
Q 001287 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGG--DGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1107)
Q Consensus 32 ~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~--~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~ 109 (1107)
.+.+..+..++++|+++++|+|...+..+-+|. ..-+.+ ..+....+..+.+.+++. ++.++.++.|.+++.+.++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~-~~~~~~~~~~~~~~~~g~-~~~~~~~G~~~~s~~D~G~ 236 (327)
T 2xbg_A 159 QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH-NRTTSRRLHNMGFTPDGR-LWMIVNGGKIAFSDPDNSE 236 (327)
T ss_dssp CSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE-ECCSSSCEEEEEECTTSC-EEEEETTTEEEEEETTEEE
T ss_pred cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC-CCCCCCccceeEECCCCC-EEEEeCCceEEEecCCCCC
Confidence 355667889999999999988865444444553 222222 344566899999988864 5566678888877533343
Q ss_pred eeeeec-----cCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCc-eeecceeecccccccccCCCCCCCCCeEEEE
Q 001287 110 LACCLK-----WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK-LFQLPYNISADALSEKAGFPLLSHQPVVGVL 183 (1107)
Q Consensus 110 ~~~~~~-----~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~-l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~ 183 (1107)
--..+. ....+.++.+.+++..+++|. +|.| .+..| .|+ ... +.... .....+.+|.
T Consensus 237 tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~D--gG~tW~~----~~~~~---------~~~~~~~~v~ 299 (327)
T 2xbg_A 237 NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQD--GGQTWQQ----DVDVK---------KVPSNFYKIL 299 (327)
T ss_dssp EECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESS--TTSSCEE----CGGGT---------TSSSCCCEEE
T ss_pred eeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCC--CCcccEE----cCccC---------CCCCCeEEEE
Confidence 322222 123588888888777666665 5655 22223 222 211 11100 0014567788
Q ss_pred cccCCCCCEEEEEECCCeEEEEE
Q 001287 184 PHPNSSGNRVLIAYENALVILWD 206 (1107)
Q Consensus 184 f~P~~~~~~ll~~~~dg~V~vwd 206 (1107)
|.+ ++ .+++++.+|.|.-++
T Consensus 300 ~~~--~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 300 FFS--PD-QGFILGQKGILLRYV 319 (327)
T ss_dssp EEE--TT-EEEEECSTTEEEEEC
T ss_pred EEC--CC-ceEEEcCCceEEEEc
Confidence 853 34 478888899776554
No 310
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=93.99 E-value=2.9 Score=45.55 Aligned_cols=155 Identities=10% Similarity=0.050 Sum_probs=94.2
Q ss_pred CeEEEEEcCCCCEEEEE-ECCCcEEEEeCCCcceee-eCCCCCCEEEEEEEeCCCEEEEEeC--CCcEEEEEcCCCeeee
Q 001287 37 TASILAFDHIQRLLAIA-TLDGRIKVIGGDGIEGLL-ISPSQLPYKNLEFLQNQGFLISITN--DNEIQVWSLESRSLAC 112 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~G-s~dg~I~iw~~~~~~~~~-~~~h~~~V~~l~fs~d~~~L~S~s~--d~~I~vWDl~s~~~~~ 112 (1107)
.+..+|+++.++.|... ...+.|.+++.++..... ....-..-..|++.|.+++|+-+.. .+.|...+.+......
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~ 159 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI 159 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE
Confidence 45679999866655554 456899999997754433 3233345689999997777776663 5778888887543322
Q ss_pred eec-cCCCeEEEEEecCCCEEEEEcC-CCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCC
Q 001287 113 CLK-WESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1107)
Q Consensus 113 ~~~-~~~~Vt~l~~~~~~~~l~~g~~-dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~ 190 (1107)
... .-.....+++++++..|+.++. .+.|+.++++....+.. +... ...+.+++.. .+
T Consensus 160 ~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~-----~~~~------------~~~P~glav~---~~ 219 (318)
T 3sov_A 160 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAV-----VKGS------------LPHPFALTLF---ED 219 (318)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-----ECSC------------CSCEEEEEEE---TT
T ss_pred EEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEE-----ecCC------------CCCceEEEEe---CC
Confidence 221 2245689999999989988875 45555555542111111 1111 1446667662 23
Q ss_pred CEEEEEECCCeEEEEEccCCE
Q 001287 191 NRVLIAYENALVILWDVSEAQ 211 (1107)
Q Consensus 191 ~~ll~~~~dg~V~vwdl~~~~ 211 (1107)
..+.+-...+.|..+|..+++
T Consensus 220 ~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 220 ILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp EEEEEETTTTEEEEEETTTCC
T ss_pred EEEEEecCCCeEEEEECCCCC
Confidence 334444456677777775553
No 311
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=93.91 E-value=1.9 Score=46.81 Aligned_cols=158 Identities=15% Similarity=0.107 Sum_probs=96.2
Q ss_pred CCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEE---EeCCCeEEEecc-------------C
Q 001287 494 VDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSF---CFINSSLAVGNE-------------F 557 (1107)
Q Consensus 494 ~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~f---spd~~~Lasg~~-------------d 557 (1107)
++.++++.-..|+|..||...+....+ .+..... -......+..|.| .|+++++++... +
T Consensus 24 ~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~---~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~ 99 (334)
T 2p9w_A 24 RQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASS---NGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGA 99 (334)
T ss_dssp TTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCC---SSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSC
T ss_pred CCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccc---cCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCC
Confidence 455666666799999999986654322 1110000 0001113578999 688888886442 5
Q ss_pred ceEEEEEec---CCCCCccceeeccCcCcceecccCCcceeEEEEeec-----------CcCEEEEEEcCCCCEEEEEeC
Q 001287 558 GLVYIYNLN---GSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLV-----------NSPVRALQFTSSGAKLAVGFE 623 (1107)
Q Consensus 558 g~V~vw~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h-----------~~~Vt~la~sp~~~~la~Gs~ 623 (1107)
..|..|++. +.... ....+... ......++..++|+..++++.
T Consensus 100 ~~v~~~Dl~~~~tg~~~-----------------------~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~ 156 (334)
T 2p9w_A 100 SSFHSFNLPLSENSKPV-----------------------WSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL 156 (334)
T ss_dssp CEEEEEESSCCTTCCCS-----------------------EEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE
T ss_pred CEEEEEcCCcCCCCCEE-----------------------EEecCccccccccccccccccCCceeEECCCCCEEEeCCC
Confidence 678888887 33110 11111111 124778999999999999988
Q ss_pred C-CeEEEEEcCCCeEE-EEeec-CCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCC
Q 001287 624 C-GRVAVLDMNLLSVL-FFTDD-ISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1107)
Q Consensus 624 d-g~V~iwd~~~~~~~-~~~~~-~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~ 700 (1107)
. +.|..++..+..+. +.... .....-..+.++|. |++.+|++...+|.|..+|..
T Consensus 157 ~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~----------------------pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 157 GMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFD----------------------PHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp SSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEE----------------------TTTTEEEEESSSSSEEEEECS
T ss_pred CCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEe----------------------CCCCEEEEEcCCCeEEEEcCC
Confidence 8 88888888776433 11111 01112234566666 667778888779999999976
No 312
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=93.41 E-value=0.49 Score=52.95 Aligned_cols=106 Identities=15% Similarity=0.165 Sum_probs=74.8
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCC-Cc---c---------e--eeeC----CCCCCEEEEEEEe---CCCEEEEE
Q 001287 37 TASILAFDHIQRLLAIATLDGRIKVIGGD-GI---E---------G--LLIS----PSQLPYKNLEFLQ---NQGFLISI 94 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~Gs~dg~I~iw~~~-~~---~---------~--~~~~----~h~~~V~~l~fs~---d~~~L~S~ 94 (1107)
.|.-+..+|+|++||+-+. ..|.|-.++ .. . + ..+. ....+|..+.|+| ++..|+..
T Consensus 67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 6788999999999999975 578887765 21 0 0 1111 1357899999998 45789999
Q ss_pred eCCCcEEEEEcCCCe--ee------eeec---cCCCeEEEEEecCCCEEEEEc--CCCcEEE
Q 001287 95 TNDNEIQVWSLESRS--LA------CCLK---WESNITAFSVISGSHFMYIGD--ENGLMSV 143 (1107)
Q Consensus 95 s~d~~I~vWDl~s~~--~~------~~~~---~~~~Vt~l~~~~~~~~l~~g~--~dg~V~v 143 (1107)
..|+.|++||+.... .. ..++ ....|.+++|.+++-.|++.+ +.|.|+-
T Consensus 146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 999999999998631 11 1111 125788999998777677644 7786643
No 313
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=92.61 E-value=13 Score=40.05 Aligned_cols=116 Identities=13% Similarity=0.205 Sum_probs=80.8
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCC-eeeeeec---
Q 001287 40 ILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-SLACCLK--- 115 (1107)
Q Consensus 40 ~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~-~~~~~~~--- 115 (1107)
+.-.+|..+.||.=. ...++||+++..+.+-...-..+|..=.|..+ ..|+-++ +..|.-|+++.. .+...+.
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~-~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~ 147 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHS 147 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSS-SEEEEEE-SSEEEEEESSTTCCCEEEEECCG
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCC-CeEEEEc-CCcEEEEcccCCCCCceeeecch
Confidence 455699999999987 68899999999988866666678999999766 4565555 678999999753 3333331
Q ss_pred --cCCCeEEEEEecCCCEEEEEc---CC----CcEEEEEeecCCCceeecceeecccc
Q 001287 116 --WESNITAFSVISGSHFMYIGD---EN----GLMSVIKYDADEGKLFQLPYNISADA 164 (1107)
Q Consensus 116 --~~~~Vt~l~~~~~~~~l~~g~---~d----g~V~vw~~d~~~~~l~~~~~~i~~~~ 164 (1107)
....|.....+++.+|++..+ .+ |.+.++..+ .+..|. +.+|.
T Consensus 148 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e---r~~sQ~---ieGha 199 (365)
T 2xzh_A 148 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD---RKVSQP---IEGHA 199 (365)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT---TTEEEE---ECCSE
T ss_pred hcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeec---ccccce---eeeee
Confidence 135788999999999876443 23 455555444 344443 55553
No 314
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=92.17 E-value=16 Score=40.12 Aligned_cols=157 Identities=14% Similarity=0.215 Sum_probs=94.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEE------------ECCCcEEEEeCCCc----ceeeeCC-----CCCCEEEEEEEe--CC-
Q 001287 33 GIPATASILAFDHIQRLLAIA------------TLDGRIKVIGGDGI----EGLLISP-----SQLPYKNLEFLQ--NQ- 88 (1107)
Q Consensus 33 G~~~~i~~lafsp~~~~LA~G------------s~dg~I~iw~~~~~----~~~~~~~-----h~~~V~~l~fs~--d~- 88 (1107)
|.....-.++++|+|..+.+. ..+|.|.+||.+.. +.+...+ ....-..|.+.+ ++
T Consensus 47 ~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~ 126 (355)
T 3sre_A 47 GIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNT 126 (355)
T ss_dssp TCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCC
T ss_pred CCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCc
Confidence 434456678889987554443 26899999998621 2222222 223667777766 34
Q ss_pred CEEEEEeC---CCcEEEEEcCCC--e--eeeeeccC--CCeEEEEEecCCCEEEEEcC---C------------CcEEEE
Q 001287 89 GFLISITN---DNEIQVWSLESR--S--LACCLKWE--SNITAFSVISGSHFMYIGDE---N------------GLMSVI 144 (1107)
Q Consensus 89 ~~L~S~s~---d~~I~vWDl~s~--~--~~~~~~~~--~~Vt~l~~~~~~~~l~~g~~---d------------g~V~vw 144 (1107)
.+|+.+.. +.+|.+|+++.. . ++..+... ...+.+.+.+++.+.++..- + ..=+||
T Consensus 127 ~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy 206 (355)
T 3sre_A 127 VYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT 206 (355)
T ss_dssp EEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred EEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence 35666643 467888887653 2 23333222 46889999999987776541 1 223566
Q ss_pred EeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEE-CCCeEEEEEccC
Q 001287 145 KYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVSE 209 (1107)
Q Consensus 145 ~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~-~dg~V~vwdl~~ 209 (1107)
.++.. ++... ..+ + ...++|+|+| +++.|+++. ..+.|..|++..
T Consensus 207 r~d~~--~~~~~---~~~--l-----------~~pNGia~sp--Dg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 207 YYSPN--DVRVV---AEG--F-----------DFANGINISP--DGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EECTT--CCEEE---EEE--E-----------SSEEEEEECT--TSSEEEEEEGGGTEEEEEEECT
T ss_pred EEECC--eEEEe---ecC--C-----------cccCcceECC--CCCEEEEEeCCCCeEEEEEECC
Confidence 67652 22211 111 1 4579999988 677677665 467889999864
No 315
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=91.92 E-value=6.7 Score=43.28 Aligned_cols=109 Identities=15% Similarity=0.157 Sum_probs=65.6
Q ss_pred cccceeeeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcce-ee----eCCCCCCEEEEEEEeC---CCEEEEE
Q 001287 23 DLNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG-LL----ISPSQLPYKNLEFLQN---QGFLISI 94 (1107)
Q Consensus 23 ~~~~~~~~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~-~~----~~~h~~~V~~l~fs~d---~~~L~S~ 94 (1107)
.+....... |+. .+..|+|+|+++++ ++..+|+|++++ ++... +. ..........|+|+|+ +++|..+
T Consensus 20 ~~~~~~va~-~l~-~P~~ia~~pdG~l~-V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~ 95 (352)
T 2ism_A 20 GLRVEEVVG-GLE-VPWALAFLPDGGML-IAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAY 95 (352)
T ss_dssp CCCEEEEEC-CCS-CEEEEEECTTSCEE-EEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred CcEEEEEEC-CCC-CceEEEEcCCCeEE-EEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEE
Confidence 344443332 333 57789999999955 556779999998 44321 11 1122456789999998 5555444
Q ss_pred eC-C-----CcEEEEEcCCCe------eeeeecc-C---CCeEEEEEecCCCEEEEEc
Q 001287 95 TN-D-----NEIQVWSLESRS------LACCLKW-E---SNITAFSVISGSHFMYIGD 136 (1107)
Q Consensus 95 s~-d-----~~I~vWDl~s~~------~~~~~~~-~---~~Vt~l~~~~~~~~l~~g~ 136 (1107)
.. . +.|..|+..... ++..+.. . .....++|.|++. |+++.
T Consensus 96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~ 152 (352)
T 2ism_A 96 RTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTT 152 (352)
T ss_dssp EEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEEC
T ss_pred EecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEE
Confidence 33 2 678888887542 2222221 1 1346889999985 55554
No 316
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=91.48 E-value=2.7 Score=46.66 Aligned_cols=98 Identities=13% Similarity=0.074 Sum_probs=61.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeee----CCCCCCEEEEEEEeC---CCEEEEEeC----C----CcE
Q 001287 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLI----SPSQLPYKNLEFLQN---QGFLISITN----D----NEI 100 (1107)
Q Consensus 36 ~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~----~~h~~~V~~l~fs~d---~~~L~S~s~----d----~~I 100 (1107)
..+..|+|+|+++ |.++..+|+|++++.++.+.+.. .........|+|+|+ +++|..+.. + +.|
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 4578899999998 45566779999998655422211 123356889999997 455544433 3 678
Q ss_pred EEEEcCCC-------e-eeeeecc--CCCeEEEEEecCCCEEEEE
Q 001287 101 QVWSLESR-------S-LACCLKW--ESNITAFSVISGSHFMYIG 135 (1107)
Q Consensus 101 ~vWDl~s~-------~-~~~~~~~--~~~Vt~l~~~~~~~~l~~g 135 (1107)
..|+.... + ++..+.. ......++|.|++. |+++
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt 151 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYIT 151 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEE
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEE
Confidence 88887654 1 1121221 11245688999986 4444
No 317
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=90.51 E-value=26 Score=39.35 Aligned_cols=206 Identities=11% Similarity=0.131 Sum_probs=128.5
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCC-eeeeeec--
Q 001287 39 SILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-SLACCLK-- 115 (1107)
Q Consensus 39 ~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~-~~~~~~~-- 115 (1107)
.+.-.+|..+.||.=. ...++||+++..+.+-...-..+|..=.|..+ ..|+-++ +..|.-|+++.. .+...+.
T Consensus 69 dsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 69 DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecc
Confidence 3566789999999987 68899999999888766666678999999776 4555554 778999999753 3333331
Q ss_pred ---cCCCeEEEEEecCCCEEEEEc---C----CCcEEEEEeecCCCceeec---------ceeecccc------------
Q 001287 116 ---WESNITAFSVISGSHFMYIGD---E----NGLMSVIKYDADEGKLFQL---------PYNISADA------------ 164 (1107)
Q Consensus 116 ---~~~~Vt~l~~~~~~~~l~~g~---~----dg~V~vw~~d~~~~~l~~~---------~~~i~~~~------------ 164 (1107)
....|.....+++.+|++..+ . .|.+.++..+.. ..|. .+++++..
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~---~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~ 222 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK---VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRG 222 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC---CEEEECCSEEEEEEEECTTCSSEEEEEEEEECS
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc---ccchheeeeeeeEEEecCCCCCCceEEEEEEec
Confidence 135788899999998877433 1 355555554421 1110 01111100
Q ss_pred --------------------c---ccc-cCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCcc
Q 001287 165 --------------------L---SEK-AGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKD 220 (1107)
Q Consensus 165 --------------------~---~~~-~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~ 220 (1107)
. ... ++.+....+-..++..++ ....+.....-|.+.+||++++.++....-
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~--kygviyviTK~G~i~lyDleTgt~i~~nrI-- 298 (494)
T 1bpo_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE--KHDVVFLITKYGYIHLYDLETGTCIYMNRI-- 298 (494)
T ss_dssp TTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET--TTTEEEEEETTSEEEEEETTTCCEEEEEEC--
T ss_pred CCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc--cCCEEEEEecCceEEEEecccceeeeeecc--
Confidence 0 000 011112234456666655 344588999999999999999988765422
Q ss_pred ccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 221 LQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
. ...|-..|-. .+..-+++....|.|.--.++..
T Consensus 299 -------s--------------------~~~iF~t~~~-~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 299 -------S--------------------GETIFVTAPH-EATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp -------C--------------------SSCEEEEEEE-TTTTEEEEEETTCEEEEEEECTT
T ss_pred -------c--------------------CCceEEeccc-CCCCcEEEEccCceEEEEEEccc
Confidence 1 3344444433 44445666668888877776644
No 318
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=90.46 E-value=1.1 Score=54.77 Aligned_cols=159 Identities=9% Similarity=-0.038 Sum_probs=88.6
Q ss_pred ccC-CCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccC--ceEEEEEec
Q 001287 490 KCH-SVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF--GLVYIYNLN 566 (1107)
Q Consensus 490 ~~s-~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~d--g~V~vw~~~ 566 (1107)
++. ..+++|++-...+.|.+.+..+.....+ +.........|+++|.+++|..+... +.|.+++++
T Consensus 459 avD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l-----------~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d 527 (699)
T 1n7d_A 459 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL-----------FREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 527 (699)
T ss_dssp ECCCSSSBCEECCTTTSCEEEEBSSSCCEEEE-----------CCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS
T ss_pred EEEeeCCcEEEEeccCCeEEEEecCCCceEEE-----------EeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC
Confidence 555 4567788777788899999886654411 11111245678899977666655432 556655554
Q ss_pred CCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEE-eCCCeEEEEEcCCCeEEEEeecCC
Q 001287 567 GSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVG-FECGRVAVLDMNLLSVLFFTDDIS 645 (1107)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~G-s~dg~V~iwd~~~~~~~~~~~~~~ 645 (1107)
..... ......-..-..|+|+|++..|.+. +..+.|.++|+.+......... .
T Consensus 528 G~~~~-------------------------~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~-~ 581 (699)
T 1n7d_A 528 GVDIY-------------------------SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED-E 581 (699)
T ss_dssp SCCCC-------------------------EESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCC-S
T ss_pred CCCee-------------------------EEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEec-C
Confidence 43110 1011112234579999976555554 4667899999876432211110 0
Q ss_pred CCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcceecCC
Q 001287 646 GSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 708 (1107)
Q Consensus 646 ~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~i~~~ 708 (1107)
+.-.....|.+. .+.++++....+.|.++|..+|+.+...
T Consensus 582 ~~~~~P~glavd-----------------------~~~lywtd~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 582 KRLAHPFSLAVF-----------------------EDKVFWTDIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp SSCSSCCCCEEE-----------------------TTEEEEECSTTTCEEEEETTTEEEEECC
T ss_pred CcCCCceEeEEE-----------------------CCEEEEEeCCCCeEEEEEccCCCceEEe
Confidence 001111122222 1345556666789999999888876543
No 319
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=89.94 E-value=0.023 Score=57.24 Aligned_cols=42 Identities=21% Similarity=0.329 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHHH
Q 001287 1054 SSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANEL 1095 (1107)
Q Consensus 1054 ~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~ 1095 (1107)
-..+..+=+++.||||||+.|.+||++|++.|..|-.-|++|
T Consensus 151 k~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~k~a~~l 192 (199)
T 3kyq_A 151 KIILHNTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARKQ 192 (199)
T ss_dssp CCEEESSGGGTSCTTCCHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677899999999999999999999999999999986
No 320
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=89.45 E-value=4.8 Score=44.50 Aligned_cols=100 Identities=9% Similarity=-0.022 Sum_probs=59.1
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCcce--ee-----eCCCCCCEEEEEEEeC---CCEEEEE-eC-------CC
Q 001287 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEG--LL-----ISPSQLPYKNLEFLQN---QGFLISI-TN-------DN 98 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~--~~-----~~~h~~~V~~l~fs~d---~~~L~S~-s~-------d~ 98 (1107)
.+..|+|+|+++.|.++...|+|++++.++... +. ..........|+|+|+ .++|..+ +. .+
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 567899999999444667789999998654321 11 1122346789999995 4444443 32 23
Q ss_pred cEEEEEcCCC--ee------eeeecc----CCCeEEEEEecCCCEEEEEcC
Q 001287 99 EIQVWSLESR--SL------ACCLKW----ESNITAFSVISGSHFMYIGDE 137 (1107)
Q Consensus 99 ~I~vWDl~s~--~~------~~~~~~----~~~Vt~l~~~~~~~~l~~g~~ 137 (1107)
.|..|++... .+ +..+.. ......++|.|++ +|+++..
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G 148 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALG 148 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEEC
T ss_pred EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEEC
Confidence 5777777543 11 111111 0124579999998 5555543
No 321
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=89.21 E-value=43 Score=39.95 Aligned_cols=178 Identities=10% Similarity=-0.006 Sum_probs=97.4
Q ss_pred CCCcEEEEeCCCc--ceeeeCCCCCCEEEEEEEeCCCEEEEEeC-CCcEEEEEcCCCee-eeeecc-CCCeEEEEEecCC
Q 001287 55 LDGRIKVIGGDGI--EGLLISPSQLPYKNLEFLQNQGFLISITN-DNEIQVWSLESRSL-ACCLKW-ESNITAFSVISGS 129 (1107)
Q Consensus 55 ~dg~I~iw~~~~~--~~~~~~~h~~~V~~l~fs~d~~~L~S~s~-d~~I~vWDl~s~~~-~~~~~~-~~~Vt~l~~~~~~ 129 (1107)
....|+..++++. +.......-.....|+|++.+++|+-+.. .+.|..+++..... ...+.. -.....+++++.+
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~ 95 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95 (619)
T ss_dssp CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence 3467888888654 33334444456789999997777776664 57799999877632 222222 2568899999987
Q ss_pred CEEEEEc-CCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEEC--CCeEEEEE
Q 001287 130 HFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE--NALVILWD 206 (1107)
Q Consensus 130 ~~l~~g~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~--dg~V~vwd 206 (1107)
..|++++ ..+.|.+.+++. ..... +.... ...+..|++.|. .+. |+.+.. .+.|...+
T Consensus 96 ~~ly~~d~~~~~I~v~~~dG---~~~~~---l~~~~-----------l~~P~~Iavdp~-~g~-ly~tD~g~~~~I~r~~ 156 (619)
T 3s94_A 96 EKLYWTDSETNRIEVSNLDG---SLRKV---LFWQE-----------LDQPRAIALDPS-SGF-MYWTDWGEVPKIERAG 156 (619)
T ss_dssp TEEEEEETTTTEEEEEETTS---CSCEE---EECSS-----------CSCCCCEEEETT-TTE-EEEEECSSSCEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCC---CCEEE---EEeCC-----------CCCCceEEEecC-CCe-EEEeccCCCCEEEEEE
Confidence 7777765 457676666553 22211 11111 144678888774 343 544442 34555555
Q ss_pred ccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEE-cCCcEEEEeCCC
Q 001287 207 VSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY-IDGDILLWNTST 281 (1107)
Q Consensus 207 l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~-~dG~I~lWd~~~ 281 (1107)
++......+... .-.....++.. +++..|+.+. ..+.|...++..
T Consensus 157 ~dG~~~~~l~~~-----------------------------~~~~P~Glald-~~~~~LY~aD~~~~~I~~~~~dG 202 (619)
T 3s94_A 157 MDGSSRFIIINS-----------------------------EIYWPNGLTLD-YEEQKLYWADAKLNFIHKSNLDG 202 (619)
T ss_dssp TTSCSCEEEECS-----------------------------SCSSEEEEEEE-TTTTEEEEEETTTCCEEEESSSC
T ss_pred CCCCceEEEEeC-----------------------------CCCCCcEEEEE-ccCCEEEEEeCCCCeEEEecCCC
Confidence 554322222110 02234667754 6666666554 456777777754
No 322
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=88.44 E-value=48 Score=39.57 Aligned_cols=183 Identities=10% Similarity=-0.006 Sum_probs=110.8
Q ss_pred CEEEEEECCCcEEEEeCCCccee--eeCCCCCCEEEEEEEeCCCEEEEEe-CCCcEEEEEcCCCeeeeeeccC-CCeEEE
Q 001287 48 RLLAIATLDGRIKVIGGDGIEGL--LISPSQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLESRSLACCLKWE-SNITAF 123 (1107)
Q Consensus 48 ~~LA~Gs~dg~I~iw~~~~~~~~--~~~~h~~~V~~l~fs~d~~~L~S~s-~d~~I~vWDl~s~~~~~~~~~~-~~Vt~l 123 (1107)
.+|..+ ....|+..++++.... .....-.....|+|.+..+.|+-+. .++.|..+++............ .....+
T Consensus 7 ~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 7 AFLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGM 85 (628)
T ss_dssp CEEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred cEEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceE
Confidence 355555 4577999998765432 2222334688999999777777665 4688999998876444333322 457789
Q ss_pred EEecCCCEEEEEcC-CCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEEC--CC
Q 001287 124 SVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE--NA 200 (1107)
Q Consensus 124 ~~~~~~~~l~~g~~-dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~--dg 200 (1107)
++++.+..|+..+. .+.|.+.+++....+.. +.. . ...+.+|+..|. .|. |+.+.. .+
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l-----~~~-~-----------l~~P~~iavdp~-~G~-lY~tD~g~~~ 146 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVL-----VWK-D-----------LDSPRALALDPA-EGF-MYWTEWGGKP 146 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEE-----ECS-S-----------CCCEEEEEEETT-TTE-EEEEECSSSC
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEE-----EeC-C-----------CCCcccEEEccC-CCe-EEEeCCCCCC
Confidence 99988887877765 56565555542211111 111 1 145789999885 454 555442 45
Q ss_pred eEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEE-cCCcEEEEeC
Q 001287 201 LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY-IDGDILLWNT 279 (1107)
Q Consensus 201 ~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~-~dG~I~lWd~ 279 (1107)
.|...+++......+... -.....+++. +++..|+.+. ..+.|...++
T Consensus 147 ~I~r~~~dG~~~~~l~~~------------------------------~~~P~GlalD-~~~~~LY~aD~~~~~I~~~d~ 195 (628)
T 4a0p_A 147 KIDRAAMDGSERTTLVPN------------------------------VGRANGLTID-YAKRRLYWTDLDTNLIESSNM 195 (628)
T ss_dssp EEEEEETTSCSCEEEECS------------------------------CSSEEEEEEE-TTTTEEEEEETTTTEEEEEET
T ss_pred EEEEEeCCCCceEEEECC------------------------------CCCcceEEEc-cccCEEEEEECCCCEEEEEcC
Confidence 666677665533222211 2345667754 7766666665 4567888887
Q ss_pred CC
Q 001287 280 ST 281 (1107)
Q Consensus 280 ~~ 281 (1107)
..
T Consensus 196 dG 197 (628)
T 4a0p_A 196 LG 197 (628)
T ss_dssp TS
T ss_pred CC
Confidence 64
No 323
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=87.56 E-value=35 Score=36.96 Aligned_cols=161 Identities=9% Similarity=0.108 Sum_probs=94.6
Q ss_pred CeEE-EEEcC--CCCEEEEEECCCcEEEEeCCCc--------ceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEc
Q 001287 37 TASI-LAFDH--IQRLLAIATLDGRIKVIGGDGI--------EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL 105 (1107)
Q Consensus 37 ~i~~-lafsp--~~~~LA~Gs~dg~I~iw~~~~~--------~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl 105 (1107)
.|.+ +.+.+ +..++++.+.+|.|+.-.+..- ..+.+. ....+..+........|+..+..|.+..+.+
T Consensus 96 ~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lk-e~D~lv~~~~~~~~d~ill~T~~G~~~rf~~ 174 (327)
T 3uc1_A 96 RIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLR-DNDELVGAVLCSAGDDLLLVSANGQSIRFSA 174 (327)
T ss_dssp CEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCC-TTCCEEEEEEECTTCEEEEEETTSEEEEEEC
T ss_pred EEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEEC-CCCEEEEEEEecCCCEEEEEECCCeEEEEEC
Confidence 3444 44543 5789999999999999876321 111222 3456666666666678999999999887776
Q ss_pred C--CC---------eeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccc-cc-cccCCC
Q 001287 106 E--SR---------SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADA-LS-EKAGFP 172 (1107)
Q Consensus 106 ~--s~---------~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~-~~-~~~~~~ 172 (1107)
. .- ...-.+.....|.++...+...++++.++.|.++...++. |....-. .. ..+...
T Consensus 175 ~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e---------~~~~~R~~~G~~~~~l~ 245 (327)
T 3uc1_A 175 TDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE---------YPVQGRGGKGVLTVMYD 245 (327)
T ss_dssp CTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG---------SCBCCTTSCCEESSCCC
T ss_pred cccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH---------ccccCcCCCcEEEEEec
Confidence 6 21 1112223445688877777777999999999887766543 1111000 00 000000
Q ss_pred CCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCC
Q 001287 173 LLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA 210 (1107)
Q Consensus 173 ~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~ 210 (1107)
...+.+..+.... +...+++.+.+|.+.-++.+.-
T Consensus 246 -~~~d~lv~~~~~~--~~~~i~l~T~~G~~ir~~~~~i 280 (327)
T 3uc1_A 246 -RRRGRLVGALIVD--DDSELYAVTSGGGVIRTAARQV 280 (327)
T ss_dssp -TTTCSEEEEEEEC--TTCEEEEEEGGGCEEEEEGGGS
T ss_pred -CCCCeEEEEEEeC--CCccEEEEcCCCeEEEEehhhc
Confidence 1023455554422 3345788888888777776553
No 324
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=87.00 E-value=33 Score=37.66 Aligned_cols=156 Identities=14% Similarity=0.234 Sum_probs=83.9
Q ss_pred CEEEEEEEeCCCEEEEE------------eCCCcEEEEEcCCC--ee--eeeec--c---CCCeEEEEEecC--CC-EEE
Q 001287 78 PYKNLEFLQNQGFLISI------------TNDNEIQVWSLESR--SL--ACCLK--W---ESNITAFSVISG--SH-FMY 133 (1107)
Q Consensus 78 ~V~~l~fs~d~~~L~S~------------s~d~~I~vWDl~s~--~~--~~~~~--~---~~~Vt~l~~~~~--~~-~l~ 133 (1107)
....+...++|..++++ ..+|.|.++|..+. +. +.... . .-....+.+.++ +. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34455566664333333 16899999999743 22 22212 1 236778888663 32 555
Q ss_pred EEc-C--CCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEEC----C-------
Q 001287 134 IGD-E--NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE----N------- 199 (1107)
Q Consensus 134 ~g~-~--dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~----d------- 199 (1107)
+.. . +..|.+|+++...+.+... -.+.+.. ......+...| +|. +.++.. |
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~-~~~~g~~-----------~~~pND~~v~~--~G~-fyvt~~~~ftd~~~~~~e 195 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHL-KTIRHKL-----------LPSVNDIVAVG--PEH-FYATNDHYFIDPYLKSWE 195 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEE-EEECCTT-----------CSSEEEEEEEE--TTE-EEEEESCSCSSHHHHHHH
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEE-eccccCC-----------CCCCceEEEeC--CCC-EEecCCcEeCCcccccch
Confidence 553 2 5678899998765544321 1222211 24577787766 565 433322 1
Q ss_pred -------CeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEE-cC
Q 001287 200 -------ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY-ID 271 (1107)
Q Consensus 200 -------g~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~-~d 271 (1107)
|.|.-+|. +++...... -..-..++|. |||+.|+.+. ..
T Consensus 196 ~~~~~~~g~vyr~d~--~~~~~~~~~------------------------------l~~pNGia~s-pDg~~lYvadt~~ 242 (355)
T 3sre_A 196 MHLGLAWSFVTYYSP--NDVRVVAEG------------------------------FDFANGINIS-PDGKYVYIAELLA 242 (355)
T ss_dssp HHTTCCCEEEEEECT--TCCEEEEEE------------------------------ESSEEEEEEC-TTSSEEEEEEGGG
T ss_pred hhccCCccEEEEEEC--CeEEEeecC------------------------------CcccCcceEC-CCCCEEEEEeCCC
Confidence 22222222 221111100 2234678984 9999887776 46
Q ss_pred CcEEEEeCCC
Q 001287 272 GDILLWNTST 281 (1107)
Q Consensus 272 G~I~lWd~~~ 281 (1107)
+.|..|++..
T Consensus 243 ~~I~~~~~~~ 252 (355)
T 3sre_A 243 HKIHVYEKHA 252 (355)
T ss_dssp TEEEEEEECT
T ss_pred CeEEEEEECC
Confidence 7899998863
No 325
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=86.65 E-value=67 Score=39.25 Aligned_cols=152 Identities=9% Similarity=0.101 Sum_probs=87.5
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeC-----CCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCee
Q 001287 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS-----PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL 110 (1107)
Q Consensus 36 ~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~-----~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~ 110 (1107)
..|.++.. .+ ..|-+|+.+ -|..|+.......... .....|.++....++...+ ++. +-|..+|..+++.
T Consensus 103 ~~i~~i~~-~~-g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~-~Gl~~~~~~~~~~ 177 (758)
T 3ott_A 103 TDVRTMAL-QG-DTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTY-NGLCRYIPSNGKF 177 (758)
T ss_dssp SCEEEEEE-ET-TEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EET-TEEEEEETTTTEE
T ss_pred ceEEEEEe-cC-CcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeC-CCHhhCccCCCce
Confidence 34666654 33 456667766 4777877544433221 1234678877776665555 444 4577888887765
Q ss_pred eeee-cc-----CCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEc
Q 001287 111 ACCL-KW-----ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1107)
Q Consensus 111 ~~~~-~~-----~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f 184 (1107)
.... .. ...|.++..+.++..|.+|+..| + +.++...+++... ..++. ..|.++..
T Consensus 178 ~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~G-l--~~~~~~~~~~~~~-~~l~~--------------~~i~~i~~ 239 (758)
T 3ott_A 178 EGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEGY-L--FQYFPSTGQIKQT-EAFHN--------------NSIKSLAL 239 (758)
T ss_dssp EEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEEE-E--EEEETTTTEEEEE-EEEEE--------------EEEEEEEE
T ss_pred EEecCCCccccccceeEEEEEECCCCEEEEEECCC-C--eEEcCCCCeEEec-cCCCC--------------CeEEEEEE
Confidence 3221 11 12488888888777666776544 4 4455544554421 11211 34778877
Q ss_pred ccCCCCCEEEEEECCCeEEEEEccCCEEEE
Q 001287 185 HPNSSGNRVLIAYENALVILWDVSEAQIIF 214 (1107)
Q Consensus 185 ~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~ 214 (1107)
. .++. |.+|..+| +.+++..+.+...
T Consensus 240 d--~~g~-lWigT~~G-l~~~~~~~~~~~~ 265 (758)
T 3ott_A 240 D--GNGD-LLAGTDNG-LYVYHNDTTPLQH 265 (758)
T ss_dssp C--TTCC-EEEEETTE-EEEECCTTSCCEE
T ss_pred c--CCCC-EEEEeCCc-eeEEecCCCcEEE
Confidence 3 3676 77887654 6778877765543
No 326
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=86.06 E-value=13 Score=39.48 Aligned_cols=109 Identities=15% Similarity=0.117 Sum_probs=58.4
Q ss_pred CCcEEEEEecCC-----cEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccC-----ceEEEE
Q 001287 494 VDRVYLAGYHDG-----SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF-----GLVYIY 563 (1107)
Q Consensus 494 ~~~~laTgs~Dg-----tIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~d-----g~V~vw 563 (1107)
++.+++.|+.++ .+.+||..+.....+..+... ...| .++ ..++++++.|+.+ ..+.+|
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-----r~~~----~~~--~~~~~iyv~GG~~~~~~~~~~~~~ 180 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTA-----REGA----GLV--VASGVIYCLGGYDGLNILNSVEKY 180 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSC-----CBSC----EEE--EETTEEEEECCBCSSCBCCCEEEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCC-----cccc----eEE--EECCEEEEECCCCCCcccceEEEE
Confidence 567888886553 478888887776644322210 1111 122 2277888888765 346666
Q ss_pred EecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCeEE
Q 001287 564 NLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFEC-----GRVAVLDMNLLSVL 638 (1107)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~d-----g~V~iwd~~~~~~~ 638 (1107)
++.+..= ..+.........-.++.+ +++++++|+.+ ..|.+||+.+.+..
T Consensus 181 d~~~~~W-----------------------~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 235 (301)
T 2vpj_A 181 DPHTGHW-----------------------TNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWT 235 (301)
T ss_dssp ETTTTEE-----------------------EEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred eCCCCcE-----------------------EeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEE
Confidence 6655310 000000000011112222 56788888764 46899999887765
No 327
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=85.88 E-value=15 Score=38.94 Aligned_cols=109 Identities=20% Similarity=0.088 Sum_probs=57.1
Q ss_pred CCcEEEEEecCC-----cEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccC-------ceEE
Q 001287 494 VDRVYLAGYHDG-----SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF-------GLVY 561 (1107)
Q Consensus 494 ~~~~laTgs~Dg-----tIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~d-------g~V~ 561 (1107)
++.+++.|+.++ .+.+||..+.....+..+... ...| .++. -++.+++.|+.+ ..+.
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-----r~~~----~~~~--~~~~iyv~GG~~~~~~~~~~~~~ 176 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTR-----RSSV----GVGV--VGGLLYAVGGYDVASRQCLSTVE 176 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSC-----CBSC----EEEE--ETTEEEEECCEETTTTEECCCEE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCc-----ccCc----eEEE--ECCEEEEEeCCCCCCCccccEEE
Confidence 567888887664 377888887776543222110 1111 1222 367777777753 3466
Q ss_pred EEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCC-----eEEEEEcCCCe
Q 001287 562 IYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECG-----RVAVLDMNLLS 636 (1107)
Q Consensus 562 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg-----~V~iwd~~~~~ 636 (1107)
+|++....= ..+...........++.+ +++++++|+.++ .|.+||+.+..
T Consensus 177 ~yd~~~~~W-----------------------~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 177 CYNATTNEW-----------------------TYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp EEETTTTEE-----------------------EEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred EEeCCCCcE-----------------------EECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 666654310 000000000011112222 577888887653 68899998876
Q ss_pred EE
Q 001287 637 VL 638 (1107)
Q Consensus 637 ~~ 638 (1107)
..
T Consensus 232 W~ 233 (302)
T 2xn4_A 232 WR 233 (302)
T ss_dssp EE
T ss_pred Ee
Confidence 55
No 328
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=85.81 E-value=26 Score=36.99 Aligned_cols=152 Identities=13% Similarity=0.121 Sum_probs=73.3
Q ss_pred CCCEEEEEECC-----CcEEEEeCCCcc---eeeeCCCCC-CEEEEEEEeCCCEEEEEeCC-----CcEEEEEcCCCeee
Q 001287 46 IQRLLAIATLD-----GRIKVIGGDGIE---GLLISPSQL-PYKNLEFLQNQGFLISITND-----NEIQVWSLESRSLA 111 (1107)
Q Consensus 46 ~~~~LA~Gs~d-----g~I~iw~~~~~~---~~~~~~h~~-~V~~l~fs~d~~~L~S~s~d-----~~I~vWDl~s~~~~ 111 (1107)
++++++.|+.+ ..+.+||..... ......-.. .........++..++.++.+ +.+.++|..+.+-.
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~ 141 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWS 141 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEE
Confidence 46777777755 458888875544 332222111 11111112244445555432 46899999887543
Q ss_pred ee--eccCCCeEEEEEecCCCEEEEEcCCCc---EEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEccc
Q 001287 112 CC--LKWESNITAFSVISGSHFMYIGDENGL---MSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1107)
Q Consensus 112 ~~--~~~~~~Vt~l~~~~~~~~l~~g~~dg~---V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P 186 (1107)
.. +.....-.++++ .+++.++.|+.++. -.+|.++..+.+....+ .++ ... ....++.+
T Consensus 142 ~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~p-----------~~r-~~~~~~~~-- 205 (301)
T 2vpj_A 142 MLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT-PMA-----------TKR-SGAGVALL-- 205 (301)
T ss_dssp EEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEEC-CCS-----------SCC-BSCEEEEE--
T ss_pred ECCCCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCC-CCC-----------ccc-ccceEEEE--
Confidence 32 222211122222 25666666655431 13455555444444320 011 011 11233333
Q ss_pred CCCCCEEEEEECC-----CeEEEEEccCCEEEEE
Q 001287 187 NSSGNRVLIAYEN-----ALVILWDVSEAQIIFV 215 (1107)
Q Consensus 187 ~~~~~~ll~~~~d-----g~V~vwdl~~~~~~~~ 215 (1107)
++..++.|+.+ ..+.+||+.+.+-...
T Consensus 206 --~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 237 (301)
T 2vpj_A 206 --NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV 237 (301)
T ss_dssp --TTEEEEECCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred --CCEEEEEeCCCCCcccceEEEEeCCCCcEEEC
Confidence 45555666553 4678899988775544
No 329
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=85.75 E-value=2.1 Score=43.37 Aligned_cols=97 Identities=9% Similarity=-0.044 Sum_probs=62.2
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCc-------c--eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCC
Q 001287 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGI-------E--GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~-------~--~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s 107 (1107)
.++.++|+|++.+-|+ .+|.++-.+.... . .+-..+... ..++.|.++|.+.++ +|+.|.-|+-.+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 6779999999999888 6787666554331 1 111112222 689999999765555 569998887643
Q ss_pred Ceee------eeeccC--CCeEEEEEecCCCEEEEEcCCCc
Q 001287 108 RSLA------CCLKWE--SNITAFSVISGSHFMYIGDENGL 140 (1107)
Q Consensus 108 ~~~~------~~~~~~--~~Vt~l~~~~~~~~l~~g~~dg~ 140 (1107)
..-- ..+... ..+.++.+.|++.+-++. +|.
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ 155 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQ 155 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTE
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCc
Confidence 2111 111111 367999999999887777 664
No 330
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=84.79 E-value=35 Score=38.97 Aligned_cols=60 Identities=13% Similarity=0.192 Sum_probs=40.3
Q ss_pred CEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeee--ec-------cCCCeEEEEEecC---CCEEEEEcC
Q 001287 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACC--LK-------WESNITAFSVISG---SHFMYIGDE 137 (1107)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~--~~-------~~~~Vt~l~~~~~---~~~l~~g~~ 137 (1107)
.-..|+|.|+|..+++-...+.|.+++..++..... +. ..+....++++|+ +.+|++...
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s 99 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT 99 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence 356999999987666654445788888765543222 21 2356779999997 777777753
No 331
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=84.78 E-value=27 Score=38.26 Aligned_cols=60 Identities=10% Similarity=0.009 Sum_probs=35.9
Q ss_pred CCeEEEEEcCC---CCEEEEEEC-C-----CcEEEEeCCCc-----ceee--eC---CCCCCEEEEEEEeCCCEEEEEe
Q 001287 36 ATASILAFDHI---QRLLAIATL-D-----GRIKVIGGDGI-----EGLL--IS---PSQLPYKNLEFLQNQGFLISIT 95 (1107)
Q Consensus 36 ~~i~~lafsp~---~~~LA~Gs~-d-----g~I~iw~~~~~-----~~~~--~~---~h~~~V~~l~fs~d~~~L~S~s 95 (1107)
.....|+|+|+ ++.|.+... . ++|..|+.+.. +.++ .. .....-..|+|.|||...++.+
T Consensus 75 ~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 75 SGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred CCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 46788999998 555544433 2 67888877532 2222 11 1111236899999986666654
No 332
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=84.32 E-value=13 Score=39.55 Aligned_cols=64 Identities=8% Similarity=0.101 Sum_probs=36.1
Q ss_pred CCcEEEEEecC------CcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccC---------c
Q 001287 494 VDRVYLAGYHD------GSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF---------G 558 (1107)
Q Consensus 494 ~~~~laTgs~D------gtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~d---------g 558 (1107)
++.+++.|+.+ ..+.+||..+.....+..+.. ....| .++ .-++++++.|+.+ .
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~-----~r~~~----~~~--~~~~~iyv~GG~~~~~~~~~~~~ 169 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT-----QRCSH----GMV--EANGLIYVCGGSLGNNVSGRVLN 169 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSS-----CCBSC----EEE--EETTEEEEECCEESCTTTCEECC
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcC-----Cccee----EEE--EECCEEEEECCCCCCCCcccccc
Confidence 56688888765 358889988877653322211 01122 122 2367777777753 3
Q ss_pred eEEEEEecCC
Q 001287 559 LVYIYNLNGS 568 (1107)
Q Consensus 559 ~V~vw~~~~~ 568 (1107)
.+.+|++...
T Consensus 170 ~~~~yd~~~~ 179 (306)
T 3ii7_A 170 SCEVYDPATE 179 (306)
T ss_dssp CEEEEETTTT
T ss_pred eEEEeCCCCC
Confidence 4666666554
No 333
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=83.84 E-value=49 Score=35.34 Aligned_cols=142 Identities=10% Similarity=0.066 Sum_probs=83.0
Q ss_pred cCCCCEEEEEE--CCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCC--------------CcEEEEEcCC
Q 001287 44 DHIQRLLAIAT--LDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND--------------NEIQVWSLES 107 (1107)
Q Consensus 44 sp~~~~LA~Gs--~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d--------------~~I~vWDl~s 107 (1107)
++++..|.... .++.|+..+.++.....+.... +--|++++.+|+-+... +.|...+++.
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~~----~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSNDT----AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCSCEEEEEEE----EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCCCEEccCCc----eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 35677777765 3577888887776655554322 23457888888877653 3688888887
Q ss_pred CeeeeeeccCCCeEEEEEecCCCEEEEEc--CCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcc
Q 001287 108 RSLACCLKWESNITAFSVISGSHFMYIGD--ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1107)
Q Consensus 108 ~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~--~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~ 185 (1107)
.+........ +..+++++++|+-.+ .++.-.|+.++.+.....+ +..+. + ..+.
T Consensus 98 ~~~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~----lt~~~--------------~--~~~~ 153 (302)
T 3s25_A 98 HGSTVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKK----IKNHY--------------L--FTCN 153 (302)
T ss_dssp CCCEEEECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEE----EESSC--------------C--CCSE
T ss_pred CcceEeecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEE----EeCCC--------------c--eEee
Confidence 7543333222 235677888888776 4555566666654333322 33221 1 2344
Q ss_pred cCCCCCEEEEEEC-CCeEEEEEccCCEEEEE
Q 001287 186 PNSSGNRVLIAYE-NALVILWDVSEAQIIFV 215 (1107)
Q Consensus 186 P~~~~~~ll~~~~-dg~V~vwdl~~~~~~~~ 215 (1107)
| ++..|.-.+. ...|.+-++.++....+
T Consensus 154 ~--~g~~iy~t~~g~~~Iy~~~l~g~~~~~l 182 (302)
T 3s25_A 154 T--SDRYFYYNNPKNGQLYRYDTASQSEALF 182 (302)
T ss_dssp E--ETTEEEEECTTTCCEEEEETTTTEEEEE
T ss_pred E--ECCEEEEEeCCCceEEEEECCCCCEEEE
Confidence 5 4555554443 55777777776654433
No 334
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=83.77 E-value=28 Score=36.80 Aligned_cols=151 Identities=9% Similarity=0.012 Sum_probs=72.3
Q ss_pred CCCEEEEEECC-----CcEEEEeCCCcceeeeCCCCCC-E-EEEEEEeCCCEEEEEeCC-----CcEEEEEcCCCeeeee
Q 001287 46 IQRLLAIATLD-----GRIKVIGGDGIEGLLISPSQLP-Y-KNLEFLQNQGFLISITND-----NEIQVWSLESRSLACC 113 (1107)
Q Consensus 46 ~~~~LA~Gs~d-----g~I~iw~~~~~~~~~~~~h~~~-V-~~l~fs~d~~~L~S~s~d-----~~I~vWDl~s~~~~~~ 113 (1107)
++++++.|+.+ ..+.+||....+......-..+ . .+++. -++..++.++.+ +.+.++|..+.+-...
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 139 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV 139 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeec
Confidence 56677777654 3477777765544433321111 1 12222 254555556544 3588899888754332
Q ss_pred e--ccCCCeEEEEEecCCCEEEEEcCCCc-----EEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEccc
Q 001287 114 L--KWESNITAFSVISGSHFMYIGDENGL-----MSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1107)
Q Consensus 114 ~--~~~~~Vt~l~~~~~~~~l~~g~~dg~-----V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P 186 (1107)
- .....-.++++ -+++.++.|+.++. -.+|.++..+.+....+ .++ ... .....+.+
T Consensus 140 ~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p-----------~~r-~~~~~~~~-- 203 (302)
T 2xn4_A 140 APMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIA-EMS-----------TRR-SGAGVGVL-- 203 (302)
T ss_dssp CCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEEC-CCS-----------SCC-BSCEEEEE--
T ss_pred CCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECC-CCc-----------ccc-ccccEEEE--
Confidence 2 22211122222 24555555543221 12455555444444310 011 111 11233333
Q ss_pred CCCCCEEEEEECC-----CeEEEEEccCCEEEEE
Q 001287 187 NSSGNRVLIAYEN-----ALVILWDVSEAQIIFV 215 (1107)
Q Consensus 187 ~~~~~~ll~~~~d-----g~V~vwdl~~~~~~~~ 215 (1107)
++..++.|+.+ ..+.+||+.+.+-..+
T Consensus 204 --~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 235 (302)
T 2xn4_A 204 --NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV 235 (302)
T ss_dssp --TTEEEEECCBSSSSBCCCEEEEETTTTEEEEE
T ss_pred --CCEEEEECCCCCCcccceEEEEeCCCCCEeeC
Confidence 45556666554 3678899888765544
No 335
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=83.38 E-value=17 Score=41.65 Aligned_cols=98 Identities=12% Similarity=0.185 Sum_probs=57.1
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCC-Ccc-eee-eC------CCCCCEEEEEEEeC---CCEEE-EEeC-------
Q 001287 37 TASILAFDHIQRLLAIATLDGRIKVIGGD-GIE-GLL-IS------PSQLPYKNLEFLQN---QGFLI-SITN------- 96 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~Gs~dg~I~iw~~~-~~~-~~~-~~------~h~~~V~~l~fs~d---~~~L~-S~s~------- 96 (1107)
.+..|+|.|+|+++++-...++|++++.. +.. .+. +. ........|+|+|+ .++|. +.+.
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 56799999999977664433579988753 322 111 11 12456789999995 45554 4332
Q ss_pred -----CCcEEEEEcCCC--e------eeeeecc--CCCeEEEEEecCCCEEEE
Q 001287 97 -----DNEIQVWSLESR--S------LACCLKW--ESNITAFSVISGSHFMYI 134 (1107)
Q Consensus 97 -----d~~I~vWDl~s~--~------~~~~~~~--~~~Vt~l~~~~~~~~l~~ 134 (1107)
.+.|.-|++... . ++..+.. ......++|.+++.+.++
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~ 160 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYT 160 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEE
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEE
Confidence 235666665432 1 1222211 134688999999974443
No 336
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=82.20 E-value=17 Score=38.97 Aligned_cols=25 Identities=8% Similarity=-0.044 Sum_probs=18.7
Q ss_pred CCCEEEEEeCCC-----eEEEEEcCCCeEE
Q 001287 614 SGAKLAVGFECG-----RVAVLDMNLLSVL 638 (1107)
Q Consensus 614 ~~~~la~Gs~dg-----~V~iwd~~~~~~~ 638 (1107)
+++++++|+.++ .+.+||+.+.+..
T Consensus 196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 196 DGRIIVAAGVTDTGLTSSAEVYSITDNKWA 225 (315)
T ss_dssp TTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred CCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence 677888887654 5888898887654
No 337
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=81.37 E-value=31 Score=36.56 Aligned_cols=66 Identities=5% Similarity=-0.131 Sum_probs=36.8
Q ss_pred CCCEEEEEECC----CcEEEEeCCCcceeeeCCCCC-CEEEEEEEeCCCEEEEEeCC------CcEEEEEcCCCeee
Q 001287 46 IQRLLAIATLD----GRIKVIGGDGIEGLLISPSQL-PYKNLEFLQNQGFLISITND------NEIQVWSLESRSLA 111 (1107)
Q Consensus 46 ~~~~LA~Gs~d----g~I~iw~~~~~~~~~~~~h~~-~V~~l~fs~d~~~L~S~s~d------~~I~vWDl~s~~~~ 111 (1107)
++++++.|+.+ ..+.+||....+......-.. ........-++..++.++.+ +.+.+||..+.+-.
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~ 131 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWH 131 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceE
Confidence 56677777755 567788876654433222111 11111122355555665544 46999999888543
No 338
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=79.59 E-value=43 Score=36.70 Aligned_cols=59 Identities=10% Similarity=0.106 Sum_probs=40.0
Q ss_pred CCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCe-eeeeec----cCCCeEEEEEecC---CCEEEEEcC
Q 001287 77 LPYKNLEFLQNQGFLISITNDNEIQVWSLESRS-LACCLK----WESNITAFSVISG---SHFMYIGDE 137 (1107)
Q Consensus 77 ~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~-~~~~~~----~~~~Vt~l~~~~~---~~~l~~g~~ 137 (1107)
..-..|+|.|++. |+.+..++.|.++|- .++ .+..+. .......++++|+ +.+|++...
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~ 95 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYAS 95 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEe
Confidence 3467899999975 555566799999973 444 222211 2356889999998 677777654
No 339
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=79.37 E-value=2.8 Score=36.00 Aligned_cols=52 Identities=19% Similarity=0.339 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHHHH---HHhhcccccc
Q 001287 1055 SVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELV---KTMENRKWWK 1106 (1107)
Q Consensus 1055 ~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~---~~~~~~~~~~ 1106 (1107)
......++-+.++.+|+=+=.+|-++|.+.+++.+..|.+.. ++.+.+-||+
T Consensus 12 ~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwk 66 (91)
T 3hd7_A 12 AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWK 66 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888999999999999999999999999999999999876 6678888996
No 340
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=79.12 E-value=30 Score=44.88 Aligned_cols=105 Identities=10% Similarity=0.193 Sum_probs=73.6
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCC-eeeeee-cc-
Q 001287 40 ILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-SLACCL-KW- 116 (1107)
Q Consensus 40 ~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~-~~~~~~-~~- 116 (1107)
+.-.+|..++||.=. ...++||+++..+.+-...-..+|..=.|..+ ..|+-++ +..|.-|++... .+...+ .|
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~-~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred hhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCC-CeeEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence 355688999999986 68899999988877655555678888888665 3454444 678999999753 222222 11
Q ss_pred ---CCCeEEEEEecCCCEEEEEc-------CCCcEEEEEee
Q 001287 117 ---ESNITAFSVISGSHFMYIGD-------ENGLMSVIKYD 147 (1107)
Q Consensus 117 ---~~~Vt~l~~~~~~~~l~~g~-------~dg~V~vw~~d 147 (1107)
...|.....+++.+|++..+ -.|.+.++..+
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e 187 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 187 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc
Confidence 35788889999998877433 24666666665
No 341
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=78.41 E-value=30 Score=37.90 Aligned_cols=59 Identities=12% Similarity=0.213 Sum_probs=39.4
Q ss_pred CEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeee---eee-----ccCCCeEEEEEecC---CCEEEEEcC
Q 001287 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA---CCL-----KWESNITAFSVISG---SHFMYIGDE 137 (1107)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~---~~~-----~~~~~Vt~l~~~~~---~~~l~~g~~ 137 (1107)
.-..|+|.|++.+|+.+...+.|.+++... ... ..+ ...+....++++|+ +.+|++...
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~ 88 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYS 88 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEe
Confidence 357899999987455566789999998543 321 111 12345789999997 677777643
No 342
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=77.04 E-value=64 Score=34.14 Aligned_cols=151 Identities=9% Similarity=0.002 Sum_probs=70.9
Q ss_pred CCCCEEEEEECC----CcEEEEeCCCcceeeeCCCCCC--EEEEEEEeCCCEEEEEeC---------CCcEEEEEcCCCe
Q 001287 45 HIQRLLAIATLD----GRIKVIGGDGIEGLLISPSQLP--YKNLEFLQNQGFLISITN---------DNEIQVWSLESRS 109 (1107)
Q Consensus 45 p~~~~LA~Gs~d----g~I~iw~~~~~~~~~~~~h~~~--V~~l~fs~d~~~L~S~s~---------d~~I~vWDl~s~~ 109 (1107)
-++.+++.|+.+ ..+.+||....+...+..-..+ -.+++. .++..++.++. -+.+.++|..+.+
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 345677777632 4578888766554433221111 112222 24444444443 2468999998875
Q ss_pred eeeee--ccCCCeEEEEEecCCCEEEEEcCCCc---EEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEc
Q 001287 110 LACCL--KWESNITAFSVISGSHFMYIGDENGL---MSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1107)
Q Consensus 110 ~~~~~--~~~~~Vt~l~~~~~~~~l~~g~~dg~---V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f 184 (1107)
-...- .....-.+++. -+++.++.|+.++. -.+|.++..+.+....+ .++ ... ..-.++.+
T Consensus 102 W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~p-----------~~r-~~~~~~~~ 167 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGV-IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA-PML-----------TRR-IGVGVAVL 167 (308)
T ss_dssp EEECCCCSSCCBTCEEEE-ETTEEEEECCEETTEECCCEEEEETTTTEEEECC-CCS-----------SCC-BSCEEEEE
T ss_pred EeECCCCCcCccccEEEE-ECCEEEEEcCCCCCcccccEEEECCCCCeEeECC-CCC-----------ccc-cceEEEEE
Confidence 43322 11111112222 25566666654331 12455555444444321 011 111 11223333
Q ss_pred ccCCCCCEEEEEECC-----CeEEEEEccCCEEEE
Q 001287 185 HPNSSGNRVLIAYEN-----ALVILWDVSEAQIIF 214 (1107)
Q Consensus 185 ~P~~~~~~ll~~~~d-----g~V~vwdl~~~~~~~ 214 (1107)
++..++.|+.+ ..+.+||+.+.+-..
T Consensus 168 ----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 198 (308)
T 1zgk_A 168 ----NRLLYAVGGFDGTNRLNSAECYYPERNEWRM 198 (308)
T ss_dssp ----TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred ----CCEEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence 45555555543 357788888776543
No 343
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=76.93 E-value=83 Score=33.65 Aligned_cols=200 Identities=9% Similarity=0.035 Sum_probs=112.1
Q ss_pred CCCCEEEEEECCCcEEEEeCCCcc--------ee-eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEc---CCC----
Q 001287 45 HIQRLLAIATLDGRIKVIGGDGIE--------GL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL---ESR---- 108 (1107)
Q Consensus 45 p~~~~LA~Gs~dg~I~iw~~~~~~--------~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl---~s~---- 108 (1107)
|+..++++.|.+|.|+--.+..-. .. ....-...+..+........++..+..|.+.-... ...
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 456789999999999988653221 11 11123345667666666678999999998665554 222
Q ss_pred --eee-ee--eccCCCeEEEEEec---CCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeE
Q 001287 109 --SLA-CC--LKWESNITAFSVIS---GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1107)
Q Consensus 109 --~~~-~~--~~~~~~Vt~l~~~~---~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1107)
..+ .. +.....|.++.... ...+++..+.+|.++...+..-... .............+.+.
T Consensus 86 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~-----------r~~G~~~i~L~~~d~lv 154 (312)
T 1suu_A 86 KGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAV-----------KSRGVIVIKLNDKDFVT 154 (312)
T ss_dssp --CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC---------------CEECBCCCTTCCEE
T ss_pred CCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhcc-----------CCCcEEEEecCCCCEEE
Confidence 111 11 22334566554443 4678899999998877665431100 00000001111125566
Q ss_pred EEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEE--eCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEee
Q 001287 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV--GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA 258 (1107)
Q Consensus 181 ~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~ 258 (1107)
.+.... ....++..+.+|.+..++.+.-+.... .|.+. ..-.+...|.++...
T Consensus 155 ~~~~~~--~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~-----------------------i~L~~~d~vv~~~~v 209 (312)
T 1suu_A 155 SAEIVF--KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCG-----------------------MKLKEGDLFVKVLSV 209 (312)
T ss_dssp EEEEEC--TTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEEC-----------------------CCCCTTCCEEEEEEC
T ss_pred EEEEeC--CCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEe-----------------------EEeCCCCEEEEEEEE
Confidence 666532 345699999999998888766322100 00000 000113456666544
Q ss_pred cCCCCEEEEEEcCCcEEEEeCCC
Q 001287 259 SSSGSILAVGYIDGDILLWNTST 281 (1107)
Q Consensus 259 spdg~~l~sg~~dG~I~lWd~~~ 281 (1107)
.++..|++.+..|..+..++..
T Consensus 210 -~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 210 -KENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp -TTCSEEEEEETTSEEEEEEGGG
T ss_pred -CCCCeEEEEECCCceEEEEHHH
Confidence 4567788999999988887753
No 344
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=76.91 E-value=30 Score=36.80 Aligned_cols=109 Identities=15% Similarity=0.102 Sum_probs=57.3
Q ss_pred CCcEEEEEecCC-----cEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccC-----ceEEEE
Q 001287 494 VDRVYLAGYHDG-----SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF-----GLVYIY 563 (1107)
Q Consensus 494 ~~~~laTgs~Dg-----tIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~d-----g~V~vw 563 (1107)
++.+++.|+.++ .+.+||..+.....+..+.. ....| .++.+ ++.+++.|+.+ ..+.+|
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-----~r~~~----~~~~~--~~~iyv~GG~~~~~~~~~~~~y 189 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLT-----RRIGV----GVAVL--NRLLYAVGGFDGTNRLNSAECY 189 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSS-----CCBSC----EEEEE--TTEEEEECCBCSSCBCCCEEEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCc-----cccce----EEEEE--CCEEEEEeCCCCCCcCceEEEE
Confidence 566888876543 57888888776553221110 01111 22222 77788888765 346666
Q ss_pred EecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCeEE
Q 001287 564 NLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFEC-----GRVAVLDMNLLSVL 638 (1107)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~d-----g~V~iwd~~~~~~~ 638 (1107)
++....= ..+. ........-.++.+ +++++++|+.+ ..|.+||+.+.+..
T Consensus 190 d~~~~~W--------------~~~~---------~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 190 YPERNEW--------------RMIT---------AMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWT 244 (308)
T ss_dssp ETTTTEE--------------EECC---------CCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred eCCCCeE--------------eeCC---------CCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence 6654310 0000 00000111122222 67788888765 45899999887655
No 345
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=76.66 E-value=4.1 Score=41.29 Aligned_cols=117 Identities=14% Similarity=-0.012 Sum_probs=61.2
Q ss_pred CCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEE
Q 001287 484 SPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIY 563 (1107)
Q Consensus 484 ~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw 563 (1107)
..+..++++|++.+++. .+|.+.--+..+......+.....+.. .+-.. -.++.|.++|.+.++ .||.|.
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~---~Gw~~-F~a~~fD~~G~LYav--~dG~iy-- 110 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGN---GGWNQ-FQFLFFDPNGYLYAV--SKDKLY-- 110 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEEC---SCGGG-CSEEEECTTSCEEEE--ETTEEE--
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecc---ccccc-ceEEEECCCCCEEEe--CCCEEE--
Confidence 34456799999999988 677544444432211100000000000 01111 378999999999988 558554
Q ss_pred EecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEE
Q 001287 564 NLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVA 628 (1107)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~ 628 (1107)
+++....+.. ..... ....-..-=..++.|.|.|+|.+.|+. ||.++
T Consensus 111 r~~pP~~~~~-~Wl~~---------------a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 111 KASPPQSDTD-NWIAR---------------ATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp EESCCCSTTC-CHHHH---------------SEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred EeCCCcCCCC-ceecc---------------ccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 4443211100 00000 000001112467999999999988888 77643
No 346
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=76.40 E-value=30 Score=37.01 Aligned_cols=64 Identities=22% Similarity=0.340 Sum_probs=36.3
Q ss_pred CCcEEEEEecC-------CcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccC------ceE
Q 001287 494 VDRVYLAGYHD-------GSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF------GLV 560 (1107)
Q Consensus 494 ~~~~laTgs~D-------gtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~d------g~V 560 (1107)
++.+++.|+.+ ..+.+||..+.....+..+... ..+|. + ...++.+++.|+.+ ..+
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-----r~~~~-----~-~~~~~~iyv~GG~~~~~~~~~~~ 177 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIK-----VYGHN-----V-ISHNGMIYCLGGKTDDKKCTNRV 177 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSC-----EESCE-----E-EEETTEEEEECCEESSSCBCCCE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCc-----ccccE-----E-EEECCEEEEEcCCCCCCCccceE
Confidence 56688888764 2377888887776543222111 12221 1 12477777877752 346
Q ss_pred EEEEecCC
Q 001287 561 YIYNLNGS 568 (1107)
Q Consensus 561 ~vw~~~~~ 568 (1107)
.+|++.+.
T Consensus 178 ~~yd~~~~ 185 (318)
T 2woz_A 178 FIYNPKKG 185 (318)
T ss_dssp EEEETTTT
T ss_pred EEEcCCCC
Confidence 77776554
No 347
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=72.81 E-value=86 Score=34.12 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=40.9
Q ss_pred CCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeee--eee-----ccCCCeEEEEEecC---CCEEEEE
Q 001287 77 LPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA--CCL-----KWESNITAFSVISG---SHFMYIG 135 (1107)
Q Consensus 77 ~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~--~~~-----~~~~~Vt~l~~~~~---~~~l~~g 135 (1107)
..-..|+|.|||..+++--..|.|.+++...++.. ..+ ...+....++++|+ +.+|++.
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~ 100 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAY 100 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEE
Confidence 34679999999876666655899999987665432 211 12356889999996 5667664
No 348
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=71.32 E-value=1.1e+02 Score=32.41 Aligned_cols=111 Identities=8% Similarity=0.121 Sum_probs=51.1
Q ss_pred cCCCCEEEEEEC----CC-------cEEEEeCCCcceeeeCCCCCC--EEEEEEEeCCCEEEEEeCC-------CcEEEE
Q 001287 44 DHIQRLLAIATL----DG-------RIKVIGGDGIEGLLISPSQLP--YKNLEFLQNQGFLISITND-------NEIQVW 103 (1107)
Q Consensus 44 sp~~~~LA~Gs~----dg-------~I~iw~~~~~~~~~~~~h~~~--V~~l~fs~d~~~L~S~s~d-------~~I~vW 103 (1107)
..++.+++.|+. ++ .+.+||....+......-..+ -.+++.. ++...+.++.+ +.+.++
T Consensus 54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~y 132 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCY 132 (318)
T ss_dssp CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEE
T ss_pred EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE-CCEEEEEcCccCCCCcccceEEEE
Confidence 456777778773 12 166677655544433221111 1122222 44555555543 358889
Q ss_pred EcCCCeeeeeeccCCCe-EEEEEecCCCEEEEEcCC-C---cEEEEEeecCCCceee
Q 001287 104 SLESRSLACCLKWESNI-TAFSVISGSHFMYIGDEN-G---LMSVIKYDADEGKLFQ 155 (1107)
Q Consensus 104 Dl~s~~~~~~~~~~~~V-t~l~~~~~~~~l~~g~~d-g---~V~vw~~d~~~~~l~~ 155 (1107)
|..+.+-...-..+... ...++..++...+.|+.+ + .-.+|.||..+.+...
T Consensus 133 d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~ 189 (318)
T 2woz_A 133 DPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKD 189 (318)
T ss_dssp ETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEE
T ss_pred eCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEE
Confidence 99887543332222111 111122355555566531 1 1124556655555443
No 349
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=71.13 E-value=35 Score=43.09 Aligned_cols=37 Identities=16% Similarity=0.289 Sum_probs=32.9
Q ss_pred CEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee
Q 001287 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1107)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~ 114 (1107)
.+.++...++..+|++.|.|++++|||+.+++++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 5677778888899999999999999999999988765
No 350
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=70.50 E-value=11 Score=41.12 Aligned_cols=79 Identities=11% Similarity=0.003 Sum_probs=45.3
Q ss_pred CCEEEEE-eCCCeEEEEEcCCCeEEEEeecCCC--CCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCC
Q 001287 615 GAKLAVG-FECGRVAVLDMNLLSVLFFTDDISG--SSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKD 691 (1107)
Q Consensus 615 ~~~la~G-s~dg~V~iwd~~~~~~~~~~~~~~~--h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~D 691 (1107)
+..+++. +.||.|..+|..++...+.... ++ ..+|+.. ..... +.++ .+ ...+..+++|+.+
T Consensus 56 ~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~-~~lv~~SP~~~---~~~pv----v~~~-----~~--~~~~g~Vy~Gs~~ 120 (339)
T 2be1_A 56 YETLIIEPFGDGNIYYFNAHQGLQKLPLSI-RQLVSTSPLHL---KTNIV----VNDS-----GK--IVEDEKVYTGSMR 120 (339)
T ss_dssp SEEEEECCSTTTEEEEEETTTEEEEEEEEH-HHHHTTCSEEE---ECC---------------------CCEEEEECEEE
T ss_pred CcEEEEEECCCCEEEEEECCCCcEEeeecc-ccceecccccc---CCCce----eecc-----cc--cccCCEEEEEecC
Confidence 3444444 6899999999988866543322 10 1122111 10000 0000 00 0036789999999
Q ss_pred ceEEEEeCCCcceecCC
Q 001287 692 AKISIVGGSSENMISSS 708 (1107)
Q Consensus 692 g~v~v~d~~~g~~i~~~ 708 (1107)
|.++.+|..+|+.+-..
T Consensus 121 g~l~ald~~tG~~~W~~ 137 (339)
T 2be1_A 121 TIMYTINMLNGEIISAF 137 (339)
T ss_dssp EEEEEEETTTCCEEEEE
T ss_pred CEEEEEECCCCcEEEEE
Confidence 99999999999998554
No 351
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=67.70 E-value=1.2e+02 Score=31.63 Aligned_cols=162 Identities=11% Similarity=0.125 Sum_probs=93.4
Q ss_pred CCeEEEEEcC-CCCEEEEEECCCcEEEEeCCCcc-----e-eeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCC-
Q 001287 36 ATASILAFDH-IQRLLAIATLDGRIKVIGGDGIE-----G-LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES- 107 (1107)
Q Consensus 36 ~~i~~lafsp-~~~~LA~Gs~dg~I~iw~~~~~~-----~-~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s- 107 (1107)
..|..+.... +..++++.|.+|.|+...+.... . .....-...+..+....+...|+..+..|.+...+...
T Consensus 68 e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~ei 147 (276)
T 3no0_A 68 EKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREV 147 (276)
T ss_dssp CCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGS
T ss_pred CEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhC
Confidence 3455543322 56899999999999999864321 1 11122334566666665667899999999987777522
Q ss_pred --------CeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCe
Q 001287 108 --------RSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1107)
Q Consensus 108 --------~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1107)
|...-.+.....|.++....+..++++.++.|.++...++. |......-...... ...+.+
T Consensus 148 p~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e---------~~~~~R~gkGv~~i--~~~~~l 216 (276)
T 3no0_A 148 PPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEE---------IPKTNRGVKGTEVS--GTKDTL 216 (276)
T ss_dssp CBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGG---------SCCCCTTCCCEECC--CSSSCE
T ss_pred CCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHH---------cccCCCCCcceEEE--cCCCcE
Confidence 11112233346677777666777899999999887777653 11111000000001 112445
Q ss_pred EEEEcccCCCCCEEEEEECCCeEEE--EEccCC
Q 001287 180 VGVLPHPNSSGNRVLIAYENALVIL--WDVSEA 210 (1107)
Q Consensus 180 ~~v~f~P~~~~~~ll~~~~dg~V~v--wdl~~~ 210 (1107)
..+..-. ....+++.+.+|.+.. ++.+.-
T Consensus 217 v~~~~~~--~~~~i~~~t~~G~~ir~~~~~~~i 247 (276)
T 3no0_A 217 VDLIPIK--EEVELLITTKNGKAFYDKINQKDI 247 (276)
T ss_dssp EEEEEES--SEEEEEEEETTSCEEEEEEEGGGS
T ss_pred EEEEEeC--CCCEEEEEcCCCeEEEeeeCHHHC
Confidence 5544321 2334778888888777 776553
No 352
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=67.52 E-value=2.2e+02 Score=34.48 Aligned_cols=198 Identities=12% Similarity=0.178 Sum_probs=111.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeee--CCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeee
Q 001287 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLI--SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC 112 (1107)
Q Consensus 35 ~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~--~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~ 112 (1107)
...|.|+.-|.+|.+- +|+.+| +..||......... ......|.++....++ .|-.++.+ -+..+|..+.+...
T Consensus 21 ~n~V~~I~qD~~G~lW-igT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~-Gl~~yd~~~~~f~~ 96 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIW-IGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDN-GILVYNYRADRYEQ 96 (758)
T ss_dssp CCCEEEEEECTTSCEE-EEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTT-EEEEEETT-EEEEEETTTTEECC
T ss_pred cceEEEEEECCCCCEE-EEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCC-cEEEEeCC-CeEEEeCCCCEEEC
Confidence 3569999999988655 688888 55677543222111 1123468888777664 56555554 48899998876543
Q ss_pred ee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCC
Q 001287 113 CL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1107)
Q Consensus 113 ~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~ 191 (1107)
.. .....|.++.. . ...|.+|+.+| + +.++..++++.. | .... . +. ....|.++.... ++.
T Consensus 97 ~~~~~~~~i~~i~~-~-~g~lWigt~~G-l--~~~~~~~~~~~~--~--~~~~--~--~l---~~~~i~~i~~d~--~g~ 158 (758)
T 3ott_A 97 PETDFPTDVRTMAL-Q-GDTLWLGALNG-L--YTYQLQSRKLTS--F--DTRR--N--GL---PNNTIYSIIRTK--DNQ 158 (758)
T ss_dssp CSCCCCSCEEEEEE-E-TTEEEEEETTE-E--EEEETTTCCEEE--E--CHHH--H--CC---SCSCEEEEEECT--TCC
T ss_pred cccCCCceEEEEEe-c-CCcEEEEcCCc-c--eeEeCCCCeEEE--e--ccCC--C--Cc---CCCeEEEEEEcC--CCC
Confidence 11 12235777654 3 34677777664 4 444444444432 1 1000 0 00 114588887733 566
Q ss_pred EEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcC
Q 001287 192 RVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID 271 (1107)
Q Consensus 192 ~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~d 271 (1107)
|.++..+| +..+|..+++...+... ... ......|.+++.. +++..|..|...
T Consensus 159 -lWigt~~G-l~~~~~~~~~~~~~~~~-------------~~~-----------~~~~~~i~~i~~d-~~~~~lWigt~~ 211 (758)
T 3ott_A 159 -IYVGTYNG-LCRYIPSNGKFEGIPLP-------------VHS-----------SQSNLFVNSLLED-TTRQCVWIGTEG 211 (758)
T ss_dssp -EEEEETTE-EEEEETTTTEEEEECCC-------------CCT-----------TCSSCCEEEEEEE-TTTTEEEEEEEE
T ss_pred -EEEEeCCC-HhhCccCCCceEEecCC-------------Ccc-----------ccccceeEEEEEE-CCCCEEEEEECC
Confidence 77777665 56788877765433210 000 0003357888854 566666666654
Q ss_pred CcEEEEeCCCC
Q 001287 272 GDILLWNTSTT 282 (1107)
Q Consensus 272 G~I~lWd~~~~ 282 (1107)
-|..++..+.
T Consensus 212 -Gl~~~~~~~~ 221 (758)
T 3ott_A 212 -YLFQYFPSTG 221 (758)
T ss_dssp -EEEEEETTTT
T ss_pred -CCeEEcCCCC
Confidence 4777887543
No 353
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=67.49 E-value=1.3e+02 Score=31.87 Aligned_cols=105 Identities=14% Similarity=0.098 Sum_probs=67.1
Q ss_pred EEEcCCCCEEEEEE----CCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeC-CCcEEEEEcCCCeeeeeec
Q 001287 41 LAFDHIQRLLAIAT----LDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN-DNEIQVWSLESRSLACCLK 115 (1107)
Q Consensus 41 lafsp~~~~LA~Gs----~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~-d~~I~vWDl~s~~~~~~~~ 115 (1107)
.+|++++..|+... .+..|+..++++.....+..+.. ..|+++++.|.-.+. ...|.+-++..+.......
T Consensus 109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~ 184 (302)
T 3s25_A 109 IYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD 184 (302)
T ss_dssp EEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC
T ss_pred cEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC
Confidence 47888999999886 34566667777765554544433 457888888887765 5779888988775433322
Q ss_pred cCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCc
Q 001287 116 WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK 152 (1107)
Q Consensus 116 ~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~ 152 (1107)
+.. ...+.|++.+|+-....+.-+|+..+.+.+.
T Consensus 185 --~~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 185 --CNC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp --SCE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred --CCc-cceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 222 2346688988887664432345555544333
No 354
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=67.24 E-value=1.3e+02 Score=31.72 Aligned_cols=154 Identities=10% Similarity=0.056 Sum_probs=73.8
Q ss_pred EcCCCCEEEEEEC-----C------CcEEEEeCCCcceeeeCCCCCCEE--EEEEEeCCCEEEEEeCC--------CcEE
Q 001287 43 FDHIQRLLAIATL-----D------GRIKVIGGDGIEGLLISPSQLPYK--NLEFLQNQGFLISITND--------NEIQ 101 (1107)
Q Consensus 43 fsp~~~~LA~Gs~-----d------g~I~iw~~~~~~~~~~~~h~~~V~--~l~fs~d~~~L~S~s~d--------~~I~ 101 (1107)
...++++++.|+. . ..+.+||....+......-..+-. +++.. ++..++.++.+ +.+.
T Consensus 42 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~ 120 (315)
T 4asc_A 42 VTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVM 120 (315)
T ss_dssp ECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEE
T ss_pred EEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEE
Confidence 3457888888884 1 126778876655443332222211 12222 44444444421 4599
Q ss_pred EEEcCCCeeeee--eccCCCeEEEEEecCCCEEEEEcC-CC---cEEEEEeecCCCceeecceeecccccccccCCCCCC
Q 001287 102 VWSLESRSLACC--LKWESNITAFSVISGSHFMYIGDE-NG---LMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLS 175 (1107)
Q Consensus 102 vWDl~s~~~~~~--~~~~~~Vt~l~~~~~~~~l~~g~~-dg---~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~ 175 (1107)
++|..+.+-... +.....-.+++. .+++.++.|+. ++ .-.+|.++..+.+....+ .++ ...
T Consensus 121 ~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~-~~p-----------~~r 187 (315)
T 4asc_A 121 CYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELA-PMQ-----------TAR 187 (315)
T ss_dssp EEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECC-CCS-----------SCC
T ss_pred EECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECC-CCC-----------Cch
Confidence 999988753322 222111122222 35556666654 21 113455665444444321 011 111
Q ss_pred CCCeEEEEcccCCCCCEEEEEECCC-----eEEEEEccCCEEEEE
Q 001287 176 HQPVVGVLPHPNSSGNRVLIAYENA-----LVILWDVSEAQIIFV 215 (1107)
Q Consensus 176 ~~~V~~v~f~P~~~~~~ll~~~~dg-----~V~vwdl~~~~~~~~ 215 (1107)
..-.++.. ++..++.|+.++ .+.+||+.+.+-...
T Consensus 188 -~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 227 (315)
T 4asc_A 188 -SLFGATVH----DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF 227 (315)
T ss_dssp -BSCEEEEE----TTEEEEEEEECSSSEEEEEEEEETTTTEEEEE
T ss_pred -hceEEEEE----CCEEEEEeccCCCCccceEEEEECCCCeEEEC
Confidence 11223333 455566666554 577888888765443
No 355
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=66.75 E-value=19 Score=39.23 Aligned_cols=116 Identities=13% Similarity=0.105 Sum_probs=69.6
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeeeccC--CCeEEEEEe--cCCCEEEEE--cCCCcEEEEEeecCCCceeecceeecc
Q 001287 89 GFLISITNDNEIQVWSLESRSLACCLKWE--SNITAFSVI--SGSHFMYIG--DENGLMSVIKYDADEGKLFQLPYNISA 162 (1107)
Q Consensus 89 ~~L~S~s~d~~I~vWDl~s~~~~~~~~~~--~~Vt~l~~~--~~~~~l~~g--~~dg~V~vw~~d~~~~~l~~~~~~i~~ 162 (1107)
..++.++.||.|.-.|..+|+.+..+... .++....-. +.+..++++ ..||.++.++ ..+|. .+.++.++.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~--~~~G~-~~~~~~~~~ 87 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFN--AHQGL-QKLPLSIRQ 87 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEE--TTTEE-EEEEEEHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEE--CCCCc-EEeeecccc
Confidence 57889999999999999999998887544 222221100 112345554 5899775544 44453 322344432
Q ss_pred cccccccCCCCCCCCCeEEEEcccCC-------CCCEEEEEECCCeEEEEEccCCEEEEEeCC
Q 001287 163 DALSEKAGFPLLSHQPVVGVLPHPNS-------SGNRVLIAYENALVILWDVSEAQIIFVGGG 218 (1107)
Q Consensus 163 ~~~~~~~~~~~~~~~~V~~v~f~P~~-------~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~ 218 (1107)
.. . ..++.. .-.|-- .+..+++|+.+|.+...|+.+|+.++.+..
T Consensus 88 lv--~--------~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 88 LV--S--------TSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp HH--T--------TCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred ce--e--------cccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 11 0 011221 111211 334589999999999999999999987753
No 356
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=66.43 E-value=39 Score=36.90 Aligned_cols=71 Identities=14% Similarity=0.041 Sum_probs=46.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCcce--ee-e----CCCCCCEEEEEEEeC---CCEE-EEEe--CCCcEEEE
Q 001287 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEG--LL-I----SPSQLPYKNLEFLQN---QGFL-ISIT--NDNEIQVW 103 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~--~~-~----~~h~~~V~~l~fs~d---~~~L-~S~s--~d~~I~vW 103 (1107)
.+..|+|.|+++++++--..|+|++++.+.... +. . .........|+|+|+ .++| ++.+ .++.|.-|
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~ 112 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM 112 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence 567899999999776654489999998643222 11 1 223557899999985 3444 4433 45566667
Q ss_pred EcCC
Q 001287 104 SLES 107 (1107)
Q Consensus 104 Dl~s 107 (1107)
.+..
T Consensus 113 ~~~~ 116 (347)
T 3das_A 113 LYDE 116 (347)
T ss_dssp EBCT
T ss_pred EeCC
Confidence 6654
No 357
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=66.41 E-value=35 Score=37.08 Aligned_cols=16 Identities=6% Similarity=0.071 Sum_probs=11.9
Q ss_pred CcEEEEeCCCCceeEE
Q 001287 505 GSVRIWDATYPVFKLI 520 (1107)
Q Consensus 505 gtIriWd~~~~~l~~~ 520 (1107)
..+.+||..+.....+
T Consensus 168 ~~v~~yd~~~~~W~~~ 183 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYA 183 (357)
T ss_dssp CEEEEEETTTTEEEEE
T ss_pred ccEEEEeCCCCcEEEC
Confidence 4688899888776644
No 358
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=63.63 E-value=11 Score=32.67 Aligned_cols=53 Identities=19% Similarity=0.337 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHHHHH---Hhhcccccc
Q 001287 1054 SSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVK---TMENRKWWK 1106 (1107)
Q Consensus 1054 ~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~---~~~~~~~~~ 1106 (1107)
-..+...++-+.++.+|+=+=-+|-++|.+.+++.+..|....+ +++.+-||+
T Consensus 36 q~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmwwk 91 (96)
T 1sfc_A 36 QAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWK 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888899999999999999999999999999999999998865 667778996
No 359
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=63.43 E-value=22 Score=41.24 Aligned_cols=104 Identities=11% Similarity=0.063 Sum_probs=68.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCcce-------------eeeCCCCCCEEEEEEEeCCCEEEEEeCCC
Q 001287 33 GIPATASILAFDHIQRLLAIAT-LDGRIKVIGGDGIEG-------------LLISPSQLPYKNLEFLQNQGFLISITNDN 98 (1107)
Q Consensus 33 G~~~~i~~lafsp~~~~LA~Gs-~dg~I~iw~~~~~~~-------------~~~~~h~~~V~~l~fs~d~~~L~S~s~d~ 98 (1107)
.+|..+..+.++|||+++++++ .+.++.+++...... .-..+-...-...+|.++|....|.--|.
T Consensus 320 P~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidS 399 (638)
T 3sbq_A 320 PVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDS 399 (638)
T ss_dssp EESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTT
T ss_pred eCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecc
Confidence 6778888899999999887754 568899999864221 12223344678899999983334444699
Q ss_pred cEEEEEcCCC----------eeeeeeccCCCeEEEEE------ecCCCEEEEEc
Q 001287 99 EIQVWSLESR----------SLACCLKWESNITAFSV------ISGSHFMYIGD 136 (1107)
Q Consensus 99 ~I~vWDl~s~----------~~~~~~~~~~~Vt~l~~------~~~~~~l~~g~ 136 (1107)
.|.-||+... .++..+.-.-.+-.+.. .++++||++..
T Consensus 400 qvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 400 QVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred eEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 9999999764 34444433333333333 35667776653
No 360
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=60.40 E-value=1.6e+02 Score=32.31 Aligned_cols=156 Identities=13% Similarity=0.023 Sum_probs=74.3
Q ss_pred CCCeEEEEEcC--CCCEEEEEECCC----cEEEEeCCCc--ceeeeC---C---------CCCCEEEEEEEe-C-CCEEE
Q 001287 35 PATASILAFDH--IQRLLAIATLDG----RIKVIGGDGI--EGLLIS---P---------SQLPYKNLEFLQ-N-QGFLI 92 (1107)
Q Consensus 35 ~~~i~~lafsp--~~~~LA~Gs~dg----~I~iw~~~~~--~~~~~~---~---------h~~~V~~l~fs~-d-~~~L~ 92 (1107)
...|.+|+++| .+.+.|.+ ..| .|....-.+. +.+... + +...|.+|++.| + ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~-~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAA-RTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEE-EC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEe-cCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 35699999999 55555544 444 4544432222 211110 1 112477889986 2 45666
Q ss_pred EEeCCCcEEEEEcCCC--eeeeee-----------------ccCCCeEEEEEecC-CCEEEEEcCCCcEEEEEeecCCCc
Q 001287 93 SITNDNEIQVWSLESR--SLACCL-----------------KWESNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGK 152 (1107)
Q Consensus 93 S~s~d~~I~vWDl~s~--~~~~~~-----------------~~~~~Vt~l~~~~~-~~~l~~g~~dg~V~vw~~d~~~~~ 152 (1107)
.++..+.|...+=... +.+... .....|.++.++|. ...|++|...+. ++..+....+
T Consensus 133 ~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~gg--l~~s~DgG~t 210 (394)
T 3b7f_A 133 AGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGG--VFESTDAGTD 210 (394)
T ss_dssp EEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBE--EEEESSTTSS
T ss_pred EEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCC--EEEECCCCCC
Confidence 6665554443321111 122111 01235788999874 456676765553 3444332223
Q ss_pred eeecceeecccccccccCCCCCC---CCCeEEEEcccCCCCCEEEEEECCC
Q 001287 153 LFQLPYNISADALSEKAGFPLLS---HQPVVGVLPHPNSSGNRVLIAYENA 200 (1107)
Q Consensus 153 l~~~~~~i~~~~~~~~~~~~~~~---~~~V~~v~f~P~~~~~~ll~~~~dg 200 (1107)
.... .. .. ....++... ...+.+|.++|. +...|+++...+
T Consensus 211 W~~~----~~-~~-~~~~~p~~~~~~g~~~~~i~~~~~-~~~~l~vg~~~g 254 (394)
T 3b7f_A 211 WKPL----NR-GC-AANFLPDPNVEFGHDPHCVVQHPA-APDILYQQNHCG 254 (394)
T ss_dssp CEEC----CT-TC-CCTTSSSSSSSSCBCEEEEEECSS-STTEEEEEETTE
T ss_pred ceEC----CC-Cc-cccccCCCccccCcceeEEEECCC-CCCEEEEEcCCe
Confidence 3221 10 00 000001000 134889999885 334577776555
No 361
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=60.06 E-value=2e+02 Score=34.70 Aligned_cols=111 Identities=7% Similarity=0.059 Sum_probs=57.6
Q ss_pred CCCCEEEEEECC----CcEEEEeCCCcceeeeC-C-------CCCCEEEEEEEe-CCCEEEEEeCC------CcEEEEEc
Q 001287 45 HIQRLLAIATLD----GRIKVIGGDGIEGLLIS-P-------SQLPYKNLEFLQ-NQGFLISITND------NEIQVWSL 105 (1107)
Q Consensus 45 p~~~~LA~Gs~d----g~I~iw~~~~~~~~~~~-~-------h~~~V~~l~fs~-d~~~L~S~s~d------~~I~vWDl 105 (1107)
.++.+++.|+.+ ..+.+||....+..... . ..-.-.+++... ++..++.++.+ +.+.++|.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 567788888754 45777887555443322 1 111122333332 55555555532 35889999
Q ss_pred CCCeeeee--eccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceee
Q 001287 106 ESRSLACC--LKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQ 155 (1107)
Q Consensus 106 ~s~~~~~~--~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~ 155 (1107)
.+.+-... +.....-.+.++..++..++.|+.++.-.+|.||..+.+...
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~ 527 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKD 527 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEE
Confidence 88643322 222222223333346777777765442245666665555543
No 362
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=59.38 E-value=1.4e+02 Score=30.87 Aligned_cols=149 Identities=11% Similarity=0.106 Sum_probs=82.8
Q ss_pred CEEEEEECCCcEEEEeCCCcc--eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEE---EEcCCC----eeee-e--ec
Q 001287 48 RLLAIATLDGRIKVIGGDGIE--GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQV---WSLESR----SLAC-C--LK 115 (1107)
Q Consensus 48 ~~LA~Gs~dg~I~iw~~~~~~--~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~v---WDl~s~----~~~~-~--~~ 115 (1107)
...++.+.+|.|+--...... .+.+ .-...+..+........|+-.++.|.+.- +++... ..+. . +.
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~~~~~~l-ke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~ 81 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDIDAPGLNY-KAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP 81 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCCSTTSCC-CTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC
T ss_pred CEEEEEeCCCEEEEeeCCcCCceeccC-CCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC
Confidence 456778999999877654321 1112 23345666655555567888888887444 455322 2211 1 22
Q ss_pred cCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEE
Q 001287 116 WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLI 195 (1107)
Q Consensus 116 ~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~ 195 (1107)
....|.++....+..+++..+.+|.++...++.-. .....-...+.+ ...+.+..+...+ +....+++
T Consensus 82 ~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~---------~~~r~G~~~i~L--~~~d~lv~~~~~~-~~~~~i~l 149 (256)
T 1zvt_A 82 PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLV---------ARNRAGKALITL--PENAHVMPPVVIE-DASDMLLA 149 (256)
T ss_dssp TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGC---------CCSTTCEECBCC--CTTCCBCCCEECC-CTTCEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhc---------ccCcCceEEEEE--CCCCEEEEEEEec-CCCCEEEE
Confidence 34567777444456788899999988877764310 000000001111 1113444444321 13446999
Q ss_pred EECCCeEEEEEccC
Q 001287 196 AYENALVILWDVSE 209 (1107)
Q Consensus 196 ~~~dg~V~vwdl~~ 209 (1107)
.+.+|.+..|+++.
T Consensus 150 ~T~~G~~lrf~~~e 163 (256)
T 1zvt_A 150 ITQAGRMLMFPVSD 163 (256)
T ss_dssp EETTSEEEEEEGGG
T ss_pred EcCCCeEEEEEHHH
Confidence 99999988888765
No 363
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=54.47 E-value=1.5e+02 Score=35.81 Aligned_cols=65 Identities=15% Similarity=0.168 Sum_probs=38.4
Q ss_pred CCcEEEEEecCC------cEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCc--eEEEEEe
Q 001287 494 VDRVYLAGYHDG------SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFG--LVYIYNL 565 (1107)
Q Consensus 494 ~~~~laTgs~Dg------tIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg--~V~vw~~ 565 (1107)
++.+|+.|+.++ .+.+||..+.....+..+. ....+| +++...++.+++.|+.++ .+.+|+.
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p-----~~R~~h-----~~~~~~~~~iyv~GG~~~~~~v~~yd~ 520 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLS-----HTRFRH-----SACSLPDGNVLILGGVTEGPAMLLYNV 520 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCS-----BCCBSC-----EEEECTTSCEEEECCBCSSCSEEEEET
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCC-----CCcccc-----eEEEEcCCEEEEECCCCCCCCEEEEEC
Confidence 777888887543 4788888877655322111 001122 222223888888888765 5777776
Q ss_pred cCC
Q 001287 566 NGS 568 (1107)
Q Consensus 566 ~~~ 568 (1107)
.+.
T Consensus 521 ~t~ 523 (695)
T 2zwa_A 521 TEE 523 (695)
T ss_dssp TTT
T ss_pred CCC
Confidence 654
No 364
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=54.32 E-value=2.6e+02 Score=36.58 Aligned_cols=121 Identities=11% Similarity=0.140 Sum_probs=70.9
Q ss_pred ccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCC--CCeEEEEEEeCCCeEEEeccCceEEEEEecC
Q 001287 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSR--APVSTLSFCFINSSLAVGNEFGLVYIYNLNG 567 (1107)
Q Consensus 490 ~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~--~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~ 567 (1107)
-.+|..++||--. ..++.|+|+.+... +..|. .+|.--.|-.+.. |+..+ +..|..|++..
T Consensus 72 IMnP~~~iiALra-g~~lQiFnl~~k~k--------------lks~~~~e~VvfWkWis~~~-l~lVT-~~aVyHW~~~~ 134 (1630)
T 1xi4_A 72 IMNPASKVIALKA-GKTLQIFNIEMKSK--------------MKAHTMTDDVTFWKWISLNT-VALVT-DNAVYHWSMEG 134 (1630)
T ss_pred ccCCCcceEEEec-CCeEEEeehHHhhh--------------hcccccCCCceEEEecCCCe-eEEEc-CCeEEEeccCC
Confidence 4567777777654 67899999876552 22222 2455455554433 33332 44799999865
Q ss_pred CCCCccceeeccCcCcceecccCCcceeEEEEeec----CcCEEEEEEcCCCCEEEEEe-------CCCeEEEEEcCCCe
Q 001287 568 SLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLV----NSPVRALQFTSSGAKLAVGF-------ECGRVAVLDMNLLS 636 (1107)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h----~~~Vt~la~sp~~~~la~Gs-------~dg~V~iwd~~~~~ 636 (1107)
.+. +...|..| ...|..-..+++.++++..+ -.|.+.+|.++.+.
T Consensus 135 ~s~------------------------P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~ 190 (1630)
T 1xi4_A 135 ESQ------------------------PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV 190 (1630)
T ss_pred CCc------------------------cHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc
Confidence 311 22233333 56788889999988876432 34677777776554
Q ss_pred EEEEeecCCCCCCceEEEE
Q 001287 637 VLFFTDDISGSSSPIISMT 655 (1107)
Q Consensus 637 ~~~~~~~~~~h~~~V~~l~ 655 (1107)
.. .+.||...-..+.
T Consensus 191 sQ----~iegha~~F~~~~ 205 (1630)
T 1xi4_A 191 SQ----PIEGHAASFAQFK 205 (1630)
T ss_pred ch----hhhHhHhhhheec
Confidence 32 5566765443333
No 365
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=52.93 E-value=2.6e+02 Score=30.53 Aligned_cols=145 Identities=10% Similarity=0.015 Sum_probs=71.1
Q ss_pred CeEEEEEcCC--CCEEEEEECCCcEEEEeCCCcceeeeC-------------------CCCCCEEEEEEEe-CCCEEEEE
Q 001287 37 TASILAFDHI--QRLLAIATLDGRIKVIGGDGIEGLLIS-------------------PSQLPYKNLEFLQ-NQGFLISI 94 (1107)
Q Consensus 37 ~i~~lafsp~--~~~LA~Gs~dg~I~iw~~~~~~~~~~~-------------------~h~~~V~~l~fs~-d~~~L~S~ 94 (1107)
.|.+++++|. ...|.+|+..+.|...+-.+....... .....|.+|.+.| +...|..+
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg 195 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIG 195 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEE
Confidence 5778999972 445555555666666543332211110 1223588999987 33445545
Q ss_pred eCCCcEEEEEcCCCeeeeeecc--------------CCCeEEEEEecC-CCEEEEEcCCCcEEEEEeecCCCceeeccee
Q 001287 95 TNDNEIQVWSLESRSLACCLKW--------------ESNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYN 159 (1107)
Q Consensus 95 s~d~~I~vWDl~s~~~~~~~~~--------------~~~Vt~l~~~~~-~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~ 159 (1107)
..++.|..-+ +.++--..+.. ...+.++.+++. ...|+++...| |+..+....+.......
T Consensus 196 ~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g---l~~s~D~G~tW~~~~~~ 271 (394)
T 3b7f_A 196 MSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG---IYRMDRREGVWKRIGDA 271 (394)
T ss_dssp EETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE---EEEEETTTTEEECGGGG
T ss_pred ECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe---EEEeCCCCCcceECCCC
Confidence 4444333322 11211111100 124889999886 36777777655 34444332333321000
Q ss_pred ecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEE
Q 001287 160 ISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY 197 (1107)
Q Consensus 160 i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~ 197 (1107)
++. .....+.++.++|...+. |.++.
T Consensus 272 l~~-----------~~~~~~~~i~~~p~~~~~-l~~~t 297 (394)
T 3b7f_A 272 MPR-----------EVGDIGFPIVVHQRDPRT-VWVFP 297 (394)
T ss_dssp SCT-----------TTCSCEEEEEECSSCTTC-EEEEE
T ss_pred CCC-----------CCccceEEEEECCCCCCE-EEEEe
Confidence 110 001235678888765555 55554
No 366
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=51.67 E-value=39 Score=40.49 Aligned_cols=81 Identities=15% Similarity=0.176 Sum_probs=49.1
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCc-c--ee-------------eeCC-----CCCCEEEEEEEeCCCE
Q 001287 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-E--GL-------------LISP-----SQLPYKNLEFLQNQGF 90 (1107)
Q Consensus 32 ~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~-~--~~-------------~~~~-----h~~~V~~l~fs~d~~~ 90 (1107)
+.+.......+.+++. ++++-.||.+--...... . .. +... ....|.++.+ +..+
T Consensus 158 F~~R~Ph~L~avs~~~--liVsL~DGGLLrL~r~~~~d~~~~~Fnd~s~l~SL~~lf~~~~~~~~~~~Is~~~~--~~~f 233 (729)
T 3f7f_A 158 FTVRVPHFLFYVSPQF--SVVFLEDGGLLGLKKVDGVHYEPLLFNDNSYLKCLTRFFSRSSKSDYDSVISCKLF--HERY 233 (729)
T ss_dssp TTTSCEEEEEECSSSB--EEEEETTSCEECCEESSSSCEECCCCCCCGGGGGGSTTCCTTCSSCCCCEEEEEEE--TTTE
T ss_pred ccccCCcEEEEECCCe--EEEEEcCCCEEEEEeccCCCcceeeecCCchhhhhHHhhcCCCCCCcCceEEEecc--CCcE
Confidence 3344445566777655 677777766544333211 1 00 0111 1123555544 4689
Q ss_pred EEEEeCCCcEEEEEcCCCeeeeeecc
Q 001287 91 LISITNDNEIQVWSLESRSLACCLKW 116 (1107)
Q Consensus 91 L~S~s~d~~I~vWDl~s~~~~~~~~~ 116 (1107)
|++.|.|+++|+||+.+++++.....
T Consensus 234 LftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 234 LIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EEEEEcCCeEEEEEcCCCceEEeecc
Confidence 99999999999999999998877644
No 367
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=51.67 E-value=68 Score=37.21 Aligned_cols=83 Identities=7% Similarity=-0.126 Sum_probs=51.5
Q ss_pred EEEEEEeCCCeEEEec-cCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEE
Q 001287 540 STLSFCFINSSLAVGN-EFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKL 618 (1107)
Q Consensus 540 t~l~fspd~~~Lasg~-~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~l 618 (1107)
..+.++|||+++++++ .+.+|.|+++..-......... ... .++..-....-.-...+|.++|...
T Consensus 326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~--~~~-----------~~~~ae~e~GlGPlHt~Fd~~G~aY 392 (638)
T 3sbq_A 326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLA--DPR-----------DVIVGEPELGLGPLHTTFDGRGNAY 392 (638)
T ss_dssp CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCS--CGG-----------GGEEECCBCCSCEEEEEECSSSEEE
T ss_pred cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhcccc--Ccc-----------cceEeeccCCCcccEEEECCCCceE
Confidence 3578999999987766 4899999999853110000000 000 0111111123345668999999666
Q ss_pred EEEeCCCeEEEEEcCCC
Q 001287 619 AVGFECGRVAVLDMNLL 635 (1107)
Q Consensus 619 a~Gs~dg~V~iwd~~~~ 635 (1107)
.+-.-|..|.-|++...
T Consensus 393 TtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 393 TTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp EEETTTTEEEEEEHHHH
T ss_pred eeeeecceEEEEeccHH
Confidence 67779999999999653
No 368
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=50.62 E-value=2.9e+02 Score=30.51 Aligned_cols=110 Identities=9% Similarity=0.062 Sum_probs=62.9
Q ss_pred CEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeee-------------eeeccCCCeEEEEEecCCCEEEEEcCCCcEEEE
Q 001287 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA-------------CCLKWESNITAFSVISGSHFMYIGDENGLMSVI 144 (1107)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~-------------~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw 144 (1107)
.|.. ++-.+.+.+....||.|..|-....-.+ ..+.....|..++ ....+.+.-..+|.|+.|
T Consensus 76 ~v~~--va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va--~G~~hs~al~~~G~v~~w 151 (423)
T 3mvd_K 76 DAVD--ISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCIS--AGDSHSACLLEDGRVFAW 151 (423)
T ss_dssp SEEE--EEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEE--ECSSEEEEEETTSCEEEE
T ss_pred CceE--EeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEE--cCcCeEEEEeCCCeEEEE
Confidence 4544 4455667888899999999976442110 1112234555544 455677777889999998
Q ss_pred Eee-cCCCceee-------cceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEcc
Q 001287 145 KYD-ADEGKLFQ-------LPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVS 208 (1107)
Q Consensus 145 ~~d-~~~~~l~~-------~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~ 208 (1107)
-.. ...+.+-. .|..+. ....|..|+. -..+.++-..+|.|..|-..
T Consensus 152 G~~~n~~GqlG~~~~~~~~~p~~~~-------------~~~~i~~va~----G~~hs~alt~~G~v~~wG~n 206 (423)
T 3mvd_K 152 GSFRDSHGNMGLTIDGNKRTPIDLM-------------EGTVCCSIAS----GADHLVILTTAGKVFTVGCA 206 (423)
T ss_dssp ECEECSSSEEESBTTBCEEEEEESS-------------TTCCEEEEEE----CSSEEEEEETTSCEEEEECC
T ss_pred eCCCCCCCCcCcCCCCCCceeeEec-------------CCCcEEEEec----CCCeEEEEecCCeEEEeeCC
Confidence 851 12233221 111111 1145777776 23346677788888888643
No 369
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=48.49 E-value=2.7e+02 Score=29.46 Aligned_cols=151 Identities=12% Similarity=0.104 Sum_probs=86.1
Q ss_pred CCCEEEEEECCCcEEEEeCCCc--------ceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCC---------
Q 001287 46 IQRLLAIATLDGRIKVIGGDGI--------EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR--------- 108 (1107)
Q Consensus 46 ~~~~LA~Gs~dg~I~iw~~~~~--------~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~--------- 108 (1107)
+..+|++.+.+|.++.-.+..- ..+.+..+ +.+..+....+...|+..+.+|.+..++...=
T Consensus 108 ~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~G 186 (307)
T 1zi0_A 108 EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 186 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCC
T ss_pred CCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCC
Confidence 5678999999999999876211 11122233 66766666666678888999998887776331
Q ss_pred eeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccc-cc-cccCCCCCCCCCeEEEEccc
Q 001287 109 SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADA-LS-EKAGFPLLSHQPVVGVLPHP 186 (1107)
Q Consensus 109 ~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~-~~-~~~~~~~~~~~~V~~v~f~P 186 (1107)
...-.+.....|.++....+...+++.++.|.++-..++. |...... .. ..+.. ....+.+.++....
T Consensus 187 v~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e---------~~~~~Rg~kG~~~~~~-~~~~~~lv~~~~v~ 256 (307)
T 1zi0_A 187 VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE---------YPTKSRATKGVISIKV-TERNGLVVGAVQVD 256 (307)
T ss_dssp EECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGG---------SCCCCTTSCCEESSCC-CTTTCSEEEEEEEC
T ss_pred eEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH---------hccCCCCCCCEEeeEe-cCCCCeEEEEEEeC
Confidence 1111223345677776655567788889999776665542 1111100 00 00000 11124555554422
Q ss_pred CCCCCEEEEEECCCeEEEEEccC
Q 001287 187 NSSGNRVLIAYENALVILWDVSE 209 (1107)
Q Consensus 187 ~~~~~~ll~~~~dg~V~vwdl~~ 209 (1107)
+...++..+.+|.+.-++++.
T Consensus 257 --~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 257 --DCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp --TTCEEEEEESSCCEEEEEGGG
T ss_pred --CCceEEEEcCCCcEEEEeccc
Confidence 233477778888766666554
No 370
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=45.37 E-value=52 Score=42.56 Aligned_cols=38 Identities=16% Similarity=0.292 Sum_probs=31.8
Q ss_pred CEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeec
Q 001287 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK 115 (1107)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~ 115 (1107)
.+.+++..++..+|++.|.|++++|||+.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 45566667788999999999999999999998877653
No 371
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=44.16 E-value=2.2e+02 Score=32.27 Aligned_cols=59 Identities=20% Similarity=0.129 Sum_probs=38.6
Q ss_pred CeEEEEEcCCCC-EEEEEECCCcEEEEeCCCcc----eeeeC---------CCCCCEEEEEEEeC----CCEEEEEe
Q 001287 37 TASILAFDHIQR-LLAIATLDGRIKVIGGDGIE----GLLIS---------PSQLPYKNLEFLQN----QGFLISIT 95 (1107)
Q Consensus 37 ~i~~lafsp~~~-~LA~Gs~dg~I~iw~~~~~~----~~~~~---------~h~~~V~~l~fs~d----~~~L~S~s 95 (1107)
.+..|+|.|++. .|.++...|.|++++.++.. +..+. ..+.....|+|+|+ +.+.++.+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt 91 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYT 91 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEE
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEe
Confidence 467899999996 55677889999999764321 11111 12456888999985 44444444
No 372
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=40.41 E-value=6.4e+02 Score=31.46 Aligned_cols=135 Identities=12% Similarity=0.129 Sum_probs=72.3
Q ss_pred EEEEEE--e--CCCEEEEEeCCCcEEEEEcCCCee-----------eeee---ccCCCeEEEEEecCCCEEEEEcCCCcE
Q 001287 80 KNLEFL--Q--NQGFLISITNDNEIQVWSLESRSL-----------ACCL---KWESNITAFSVISGSHFMYIGDENGLM 141 (1107)
Q Consensus 80 ~~l~fs--~--d~~~L~S~s~d~~I~vWDl~s~~~-----------~~~~---~~~~~Vt~l~~~~~~~~l~~g~~dg~V 141 (1107)
.+++|. + +...+...+..|.+.-..+...-. .+.. ....+.-..-..-+...++++..||.+
T Consensus 114 ~~v~f~d~~~~~~L~v~vit~~~~Ly~l~l~~~~f~~~~~~~~~~W~~~~~p~~f~~r~p~~l~av~~~~l~Vsl~dGgL 193 (950)
T 4gq2_M 114 DGVAFSFSEHSDTTIIYAITHARVLYYIRLSKTWFQLPDARLDDDWCLCYRPISFLNQKPDLMAAISTSEICVSFFNGGL 193 (950)
T ss_dssp EEEEEEEETGGGEEEEEEEETTCCEEEEEECTHHHHSTTCCCCTTSEEEECCGGGTTSCEEEEEECSSSEEEEEETTSCE
T ss_pred CceEEeccCCCCeEEEEEEcCCCCEEEEEECHHHccCccccccccccccccCcCccCCCceEEEEEcCCeEEEEECCCCE
Confidence 457775 2 334567777888777666543210 0111 111122222223346678888888877
Q ss_pred EEEEeecCCCceeecceeecccccc-ccc------CCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEE
Q 001287 142 SVIKYDADEGKLFQLPYNISADALS-EKA------GFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF 214 (1107)
Q Consensus 142 ~vw~~d~~~~~l~~~~~~i~~~~~~-~~~------~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~ 214 (1107)
--.+.+...+......|.-.+-... +.+ .........+.+++..+ +...+++-+.|+.+|+|++.+++++.
T Consensus 194 lrl~r~~~~~~~~~~~f~~~s~~~sl~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~lftl~~D~~LRiWsl~t~~~v~ 271 (950)
T 4gq2_M 194 TKIILNPKDASHYEQHIDDSSYLFSLKKYLSLQAFKADYRSPNTIISMIFLS--TYNVLVMLSLDYKLKVLDLSTNQCVE 271 (950)
T ss_dssp EEEEEETTTTEEEEEEECCCCCCCBCC-------CCSSCCCTTCEEEEEEET--TTTEEEEEETTCEEEEEETTTTEEEE
T ss_pred EEEEecCCCCCcceeeecCCcHHHhhhhhcccccCCCCCCCcceEEEEeecC--CCcEEEEEECCCEEEEEECCCCCeEe
Confidence 5555554444332211111110000 000 01112234677777755 56679999999999999999999876
Q ss_pred Ee
Q 001287 215 VG 216 (1107)
Q Consensus 215 ~~ 216 (1107)
..
T Consensus 272 t~ 273 (950)
T 4gq2_M 272 TI 273 (950)
T ss_dssp EE
T ss_pred ee
Confidence 54
No 373
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=38.15 E-value=36 Score=23.97 Aligned_cols=35 Identities=11% Similarity=0.226 Sum_probs=27.4
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHHHHhhhhhHhH
Q 001287 1041 EEIIAKYRKAEDASSVAAHARDKLFERQDKLERISRCT 1078 (1107)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~ 1078 (1107)
|++..++++- ..+.+++++++.|=+.||.+|++-+
T Consensus 5 ~~l~qkI~kV---drEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 5 EELIQNMDRV---DREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp SHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555443 6899999999999999999998754
No 374
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=36.37 E-value=6e+02 Score=30.89 Aligned_cols=152 Identities=10% Similarity=-0.009 Sum_probs=78.8
Q ss_pred CCCeEEEEEcCC-CCEEEEEECCCcEEEEeCCCcceeeeCCC-------CCCEEEEEEEeC-CCEEEEEeCCCc----EE
Q 001287 35 PATASILAFDHI-QRLLAIATLDGRIKVIGGDGIEGLLISPS-------QLPYKNLEFLQN-QGFLISITNDNE----IQ 101 (1107)
Q Consensus 35 ~~~i~~lafsp~-~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h-------~~~V~~l~fs~d-~~~L~S~s~d~~----I~ 101 (1107)
.+.|.+|+++|. ...+.+|+..|.|....-.+..-..+..+ ...|.+|++.|. ...++.+..+.. -.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~ 93 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA 93 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Confidence 457999999996 35666677777776665444333322222 247999999984 334444433322 34
Q ss_pred EEEcCC-Ceeeeeecc--------CC--CeEEEEEecCC-CEEEEEcCCCcEEEEEeecCCCceeecceeeccccccccc
Q 001287 102 VWSLES-RSLACCLKW--------ES--NITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKA 169 (1107)
Q Consensus 102 vWDl~s-~~~~~~~~~--------~~--~Vt~l~~~~~~-~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~ 169 (1107)
||--.. ++--..... .+ .+..++++|.. +.++++...+.| |.-+....+..+. ...+..
T Consensus 94 v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~TW~~~-~~~~~~------ 164 (789)
T 1sqj_A 94 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNV-TSIPDA------ 164 (789)
T ss_dssp EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSSCEEE-TTSCCC------
T ss_pred EEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcccCCC-ccCccc------
Confidence 454333 321111110 11 35678888764 577777755533 4433221222221 001100
Q ss_pred CCCCCCCCCeEEEEcccCCCCCEEEEEECC
Q 001287 170 GFPLLSHQPVVGVLPHPNSSGNRVLIAYEN 199 (1107)
Q Consensus 170 ~~~~~~~~~V~~v~f~P~~~~~~ll~~~~d 199 (1107)
. .....+..|.++|.+.+ .++++..+
T Consensus 165 ~---~~~~~~~~i~~~p~~~~-~~~~~~~~ 190 (789)
T 1sqj_A 165 F---TNGIGYTSVIFDPERNG-TIYASATA 190 (789)
T ss_dssp C---STTTCEEEEEECTTSTT-CEEEEESS
T ss_pred c---CCCCCeEEEEECCCCCC-EEEEEEcC
Confidence 0 01145888999987444 46666654
No 375
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=36.29 E-value=4.6e+02 Score=28.58 Aligned_cols=102 Identities=10% Similarity=0.074 Sum_probs=63.8
Q ss_pred CCCEEEEEECCCcEEEEeCCCcc------e-eeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCe---------
Q 001287 46 IQRLLAIATLDGRIKVIGGDGIE------G-LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS--------- 109 (1107)
Q Consensus 46 ~~~~LA~Gs~dg~I~iw~~~~~~------~-~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~--------- 109 (1107)
...+|++++..|.++...+..-. . .......+.+..+....+...|+..+.+|.+..++...=.
T Consensus 112 ~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV 191 (370)
T 3l6v_A 112 DNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGV 191 (370)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCE
T ss_pred CCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCe
Confidence 45799999999999998752111 1 1112234566666666666788889999988888753311
Q ss_pred eeeeeccCCCeEEEEEec-----------------------------------CCCEEEEEcCCCcEEEEEee
Q 001287 110 LACCLKWESNITAFSVIS-----------------------------------GSHFMYIGDENGLMSVIKYD 147 (1107)
Q Consensus 110 ~~~~~~~~~~Vt~l~~~~-----------------------------------~~~~l~~g~~dg~V~vw~~d 147 (1107)
..-.+.....|.++...+ ...++++.++.|..+...++
T Consensus 192 ~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~ 264 (370)
T 3l6v_A 192 RGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLA 264 (370)
T ss_dssp ECCCCCTTCCEEEEEEECCC-----------------------------------CEEEEEETTSEEEEEEGG
T ss_pred eeEEeCCCCEEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHH
Confidence 111223345666666554 34578888888877666654
No 376
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=36.07 E-value=1.2e+02 Score=38.97 Aligned_cols=31 Identities=10% Similarity=0.035 Sum_probs=26.7
Q ss_pred CeEEEEEEeCCCeEEEeccCceEEEEEecCC
Q 001287 538 PVSTLSFCFINSSLAVGNEFGLVYIYNLNGS 568 (1107)
Q Consensus 538 ~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~ 568 (1107)
.+-+++..++..+|++-+.|+++|||++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~ 269 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTN 269 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTT
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCC
Confidence 4556677788899999999999999999886
No 377
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=36.06 E-value=51 Score=29.49 Aligned_cols=48 Identities=25% Similarity=0.309 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHhHHHHHhchh--hHHHHHHHHHHHhhc
Q 001287 1054 SSVAAHARDKLFERQDKLERISRCTEELQSGAE--DFASLANELVKTMEN 1101 (1107)
Q Consensus 1054 ~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~--~f~~~a~~~~~~~~~ 1101 (1107)
-..|..|+++|.+-.+....|++|-++|+..++ .|-.-=.+|+++|++
T Consensus 33 ka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~ 82 (119)
T 3etw_A 33 RAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYED 82 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 367888999999999999999999999988765 477777777777775
No 378
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=35.80 E-value=4.6e+02 Score=28.51 Aligned_cols=146 Identities=16% Similarity=0.174 Sum_probs=81.4
Q ss_pred CCEEEEEECCCcEEEEeCCCc--------c-e----eeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCee---
Q 001287 47 QRLLAIATLDGRIKVIGGDGI--------E-G----LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL--- 110 (1107)
Q Consensus 47 ~~~LA~Gs~dg~I~iw~~~~~--------~-~----~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~--- 110 (1107)
....+.-+.||.|+.|+.... + . .........+..++++....+.+..+.||.|..|-....-.
T Consensus 62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~ 141 (389)
T 3kci_A 62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGH 141 (389)
T ss_dssp TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCS
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCC
Confidence 445555677899999975321 0 0 01111234567778877778889999999999996543210
Q ss_pred --------eeeec-cC-CCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCce-------eecceeecccccccccCCCC
Q 001287 111 --------ACCLK-WE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL-------FQLPYNISADALSEKAGFPL 173 (1107)
Q Consensus 111 --------~~~~~-~~-~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l-------~~~~~~i~~~~~~~~~~~~~ 173 (1107)
-..+. .. ..|..+ .....+.+.-..+|.|+.|-.... +.+ ...|..+...
T Consensus 142 g~~~~~~~p~~v~~l~~~~i~~v--a~G~~hs~alt~~G~v~~wG~n~~-GqLG~~~~~~~~~p~~v~~~---------- 208 (389)
T 3kci_A 142 GNRSPCDRPRVIESLRGIEVVDV--AAGGAHSACVTAAGDLYTWGKGRY-GRLGHSDSEDQLKPKLVEAL---------- 208 (389)
T ss_dssp SSCCCEEEEEECGGGTTSCEEEE--EECSSEEEEEETTSCEEEEECCGG-GTTCSSSCCCEEEEEECGGG----------
T ss_pred CCCccCcCCeEecccCCCeEEEE--EeCcCeEEEEeCCCeEEEeCCCCC-CCcCCCCCcccccceEeccc----------
Confidence 01111 11 244444 445677777788999999876431 111 1111112111
Q ss_pred CCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEcc
Q 001287 174 LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVS 208 (1107)
Q Consensus 174 ~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~ 208 (1107)
....|..|+.-. ...+.++-..+|.|..|-..
T Consensus 209 -~~~~v~~ia~G~--g~~~t~~l~~~G~v~~wG~n 240 (389)
T 3kci_A 209 -QGHRVVDIACGS--GDAQTLCLTDDDTVWSWGDG 240 (389)
T ss_dssp -TTSCEEEEEECC--SSCEEEEEETTTEEEEEECC
T ss_pred -CCCeEEEEEEcC--CCcEEEEEccCCEEEEEeCC
Confidence 113466666521 12346677788988888643
No 379
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=33.44 E-value=1.5e+02 Score=27.31 Aligned_cols=62 Identities=26% Similarity=0.295 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHhccCCCh--HHHHHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHHHH-HHhhc
Q 001287 1036 RLRTREEIIAKYRKAEDA--SSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELV-KTMEN 1101 (1107)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~-~~~~~ 1101 (1107)
+.-+.++|..|...|-.- +-+| .--.+|.|+.|+-..+-++..|. ..+|+.||.|-+ .||+.
T Consensus 41 k~~SleEIqkKLeAAEERRks~Ea-~~lk~laekrehe~EvlqKa~Ee---n~~F~k~aeEkL~~KME~ 105 (143)
T 3ryc_E 41 RDPSLEEIQKKLEAAEERRKYQEA-ELLKHLAEKREHEREVIQKAIEE---NNNFIKMAKEKLAQKMES 105 (143)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 346789999984333100 0111 11234555555555555555443 568999998866 66654
No 380
>3efd_K KCSA; helix bundle, C-terminus, immune system; 2.60A {Escherichia coli}
Probab=32.68 E-value=52 Score=20.71 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 001287 1055 SVAAHARDKLFERQDKLERI 1074 (1107)
Q Consensus 1055 ~~~~~~~~~~~e~~~~l~~~ 1074 (1107)
.+-++|-.+|+||-.+|+++
T Consensus 7 eay~~atRALHeRFDRLEr~ 26 (30)
T 3efd_K 7 EAYTRTTRALHERFDRLERM 26 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35567888999999999864
No 381
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=31.12 E-value=5e+02 Score=27.47 Aligned_cols=21 Identities=19% Similarity=0.063 Sum_probs=15.0
Q ss_pred CCcEEEEEecC-CcEEEEeCCC
Q 001287 494 VDRVYLAGYHD-GSVRIWDATY 514 (1107)
Q Consensus 494 ~~~~laTgs~D-gtIriWd~~~ 514 (1107)
++.+++.|+.+ ..+.++|...
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~ 40 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQA 40 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTS
T ss_pred CCEEEEEeCcCCCeEEEEcccc
Confidence 66788888654 3588888763
No 382
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=30.75 E-value=5.5e+02 Score=27.89 Aligned_cols=151 Identities=14% Similarity=0.149 Sum_probs=89.3
Q ss_pred CCCCEEEEEECCCcEEEEeCC----------CcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEE---EEEcCCC---
Q 001287 45 HIQRLLAIATLDGRIKVIGGD----------GIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQ---VWSLESR--- 108 (1107)
Q Consensus 45 p~~~~LA~Gs~dg~I~iw~~~----------~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~---vWDl~s~--- 108 (1107)
|+..++++.|.+|.|+--.+. +... ........+..+........|+-.++.|.+. +|++...
T Consensus 5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~-~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~ 83 (370)
T 3l6v_A 5 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSA-ASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSN 83 (370)
T ss_dssp CCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEE-EECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred cCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCcee-cccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcc
Confidence 678899999999999986431 1222 2333456777777777667888888888754 4455322
Q ss_pred ---eeee-e--eccCCCeEEEEEec---CCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCe
Q 001287 109 ---SLAC-C--LKWESNITAFSVIS---GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1107)
Q Consensus 109 ---~~~~-~--~~~~~~Vt~l~~~~---~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1107)
..+. . +.....|.++.... ...+|+..+.+|.++-..++.-. ... ............+.+
T Consensus 84 a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~---------~~~--~~G~~ai~L~~~d~l 152 (370)
T 3l6v_A 84 ARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFA---------FRL--ARGKIAINLDEGDAL 152 (370)
T ss_dssp SCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGC---------SCC--TTCEESSCCCTTCCE
T ss_pred cCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhh---------ccc--CCceEEEEeCCCCEE
Confidence 2222 1 23345566655442 45699999999988877765311 100 000000111112456
Q ss_pred EEEEcccCCCCCEEEEEECCCeEEEEEccC
Q 001287 180 VGVLPHPNSSGNRVLIAYENALVILWDVSE 209 (1107)
Q Consensus 180 ~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~ 209 (1107)
..+.... ....++..+.+|.+..|+...
T Consensus 153 v~v~~~~--~~~~i~l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 153 VGVALTD--GDRDVLLFASNGKTVRFGEST 180 (370)
T ss_dssp EEEEEEC--SCCEEEEEETTSEEEEEEGGG
T ss_pred EEEEEeC--CCceEEEEeCCCeEEEEEccc
Confidence 6655532 344589999999988888665
No 383
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=30.31 E-value=5.5e+02 Score=27.68 Aligned_cols=75 Identities=17% Similarity=0.181 Sum_probs=54.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEE
Q 001287 606 VRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVI 685 (1107)
Q Consensus 606 Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L 685 (1107)
--++.+|+....+.+-+.-|.|++||++++.++|.-+. ...+|-.-+..... +. +
T Consensus 262 PVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrI---S~d~iF~ta~~~~~---------------------~G-i 316 (365)
T 2xzh_A 262 PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI---SGETIFVTAPHEAT---------------------AG-I 316 (365)
T ss_dssp EEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC---CSSCEEEEEEEGGG---------------------TE-E
T ss_pred eEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEecc---CCCceEEecccCCC---------------------Cc-E
Confidence 45788899888999999999999999999999998876 55666544433211 22 5
Q ss_pred EEEcCCceEEEEeCCCccee
Q 001287 686 IVLFKDAKISIVGGSSENMI 705 (1107)
Q Consensus 686 ~s~s~Dg~v~v~d~~~g~~i 705 (1107)
+.....|.|.-...+.-.+|
T Consensus 317 ~~Vnr~GqVl~v~v~~~~iv 336 (365)
T 2xzh_A 317 IGVNRKGQVLSVCVEEENII 336 (365)
T ss_dssp EEEETTCEEEEEEECTTTHH
T ss_pred EEEcCCCEEEEEEECcccEe
Confidence 55668888877766554443
No 384
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=29.32 E-value=88 Score=27.85 Aligned_cols=48 Identities=25% Similarity=0.309 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHhHHHHHhchh--hHHHHHHHHHHHhhc
Q 001287 1054 SSVAAHARDKLFERQDKLERISRCTEELQSGAE--DFASLANELVKTMEN 1101 (1107)
Q Consensus 1054 ~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~--~f~~~a~~~~~~~~~ 1101 (1107)
-..|..|.+.|.++.+.-.+|++|-++|+..++ -|..-=++|+++|++
T Consensus 33 ka~AE~A~~~L~~~~~m~~~i~ek~~~i~~~~~~~~yK~eY~~L~KkYk~ 82 (119)
T 2avr_X 33 RAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYED 82 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 367888999999998888888888888887664 366666777777764
No 385
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=29.17 E-value=5.4e+02 Score=27.30 Aligned_cols=201 Identities=14% Similarity=0.125 Sum_probs=109.6
Q ss_pred CCCCEEEEEECCCcEEEEeCC-----CcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEE---EcCC------Cee
Q 001287 45 HIQRLLAIATLDGRIKVIGGD-----GIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVW---SLES------RSL 110 (1107)
Q Consensus 45 p~~~~LA~Gs~dg~I~iw~~~-----~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vW---Dl~s------~~~ 110 (1107)
|+..++++.|.+|.|+--.+. +..... ..-...+..+........|+-.++.|.+.-. ++.. |..
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~-lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFA-MKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCC-CCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccc-cCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 566788999999999987543 111111 2233456666666667888888888885444 4432 222
Q ss_pred eee---eccCCCeEEEEEecC---CCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEc
Q 001287 111 ACC---LKWESNITAFSVISG---SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1107)
Q Consensus 111 ~~~---~~~~~~Vt~l~~~~~---~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f 184 (1107)
+.. +.....|.++....+ ..+++..+.+|.++-..++.- ...... ...........+.+..+..
T Consensus 82 i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~---------~~~~r~-~G~~ai~l~e~d~lv~~~~ 151 (323)
T 1wp5_A 82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHY---------KAQRYS-KPLTGINLKNDDQVVDVHL 151 (323)
T ss_dssp GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGG---------CCSCCS-SCEECSCCCTTCCEEEEEE
T ss_pred hhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHh---------hhcccc-CceEEEEeCCCCEEEEEEE
Confidence 211 223345665544332 568999999998887776531 010000 0000001111145655554
Q ss_pred ccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCC-
Q 001287 185 HPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS- 263 (1107)
Q Consensus 185 ~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~- 263 (1107)
.. ....++..+.+|.+..++...-+.. +. .+.| .....-.+...|.++... +++.
T Consensus 152 ~~--~~~~i~l~T~~G~~irf~~~ev~~~---gR-----------------~a~G-V~~i~L~~~d~Vv~~~~~-~~~~~ 207 (323)
T 1wp5_A 152 TD--GMNELFLVTHNGYALWFDESEVSIV---GV-----------------RAAG-VKGMNLKEGDYIVSGQLI-TSKDE 207 (323)
T ss_dssp EC--SCSEEEEEETTSEEEEEEGGGSCBC---CS-----------------SCCC-EECCCCCTTCCEEEEEEE-CCTTC
T ss_pred eC--CCCEEEEEeCCCcEEEEEHHHCccc---CC-----------------CCcC-EEEEEeCCCCEEEEEEEE-cCCCc
Confidence 32 3445889999999888887652211 10 0000 000001124456666545 3445
Q ss_pred EEEEEEcCCcEEEEeCC
Q 001287 264 ILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 264 ~l~sg~~dG~I~lWd~~ 280 (1107)
.|++.+..|..+.-++.
T Consensus 208 ~ll~vt~~G~gKr~~~~ 224 (323)
T 1wp5_A 208 SIVVATQRGAVKKMKLT 224 (323)
T ss_dssp EEEEEETTSEEEEEEGG
T ss_pred EEEEEECCCceEEEEHH
Confidence 78888888888776664
No 386
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=29.07 E-value=1.2e+02 Score=23.56 Aligned_cols=47 Identities=9% Similarity=0.113 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHHHHHHhhc
Q 001287 1055 SVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMEN 1101 (1107)
Q Consensus 1055 ~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~~ 1101 (1107)
..+...++-+.++.+|+=+=-++-+.|.+.+++.+..|....++..+
T Consensus 9 ~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~ 55 (61)
T 3b5n_A 9 AEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANR 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999999999999999999988776554
No 387
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=26.85 E-value=7.2e+02 Score=27.95 Aligned_cols=75 Identities=17% Similarity=0.194 Sum_probs=54.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEE
Q 001287 606 VRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVI 685 (1107)
Q Consensus 606 Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L 685 (1107)
--++.+|+....+.+-+.-|.|.+||++++.++|.-+. ...+|..-+... ..+. +
T Consensus 261 Pvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrI---s~~~iF~t~~~~---------------------~~~G-i 315 (494)
T 1bpo_A 261 PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI---SGETIFVTAPHE---------------------ATAG-I 315 (494)
T ss_dssp EEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC---CSSCEEEEEEET---------------------TTTE-E
T ss_pred eeEEEecccCCEEEEEecCceEEEEecccceeeeeecc---cCCceEEecccC---------------------CCCc-E
Confidence 34788899888999999999999999999999998876 556665444331 1122 5
Q ss_pred EEEcCCceEEEEeCCCccee
Q 001287 686 IVLFKDAKISIVGGSSENMI 705 (1107)
Q Consensus 686 ~s~s~Dg~v~v~d~~~g~~i 705 (1107)
+.....|.|.-...+.-.++
T Consensus 316 ~~Vnr~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 316 IGVNRKGQVLSVCVEEENII 335 (494)
T ss_dssp EEEETTCEEEEEEECTTTHH
T ss_pred EEEccCceEEEEEEccccch
Confidence 55568888877776655544
No 388
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=26.34 E-value=1.3e+02 Score=23.31 Aligned_cols=47 Identities=15% Similarity=0.131 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHHHHHHhhc
Q 001287 1055 SVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMEN 1101 (1107)
Q Consensus 1055 ~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~~ 1101 (1107)
..+...++-+.++.+|+=+=-+|-.+|.+.+++.+..|....+...+
T Consensus 11 ~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~ 57 (63)
T 1n7s_A 11 AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788889999999999999999999999999999999998876543
No 389
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=26.02 E-value=5.9e+02 Score=26.70 Aligned_cols=201 Identities=11% Similarity=0.090 Sum_probs=107.7
Q ss_pred CCCCEEEEEECCCcEEEEeCCCccee---------eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEE---EEcCCC----
Q 001287 45 HIQRLLAIATLDGRIKVIGGDGIEGL---------LISPSQLPYKNLEFLQNQGFLISITNDNEIQV---WSLESR---- 108 (1107)
Q Consensus 45 p~~~~LA~Gs~dg~I~iw~~~~~~~~---------~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~v---WDl~s~---- 108 (1107)
|+..++++.+.+|.|+--.+..-... ........+..+........|+-.++.|.+.- +++...
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 45678899999999987765321111 11122345666666666678888888887444 444332
Q ss_pred --eeee---eeccCCCeEEEEEe---cCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeE
Q 001287 109 --SLAC---CLKWESNITAFSVI---SGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1107)
Q Consensus 109 --~~~~---~~~~~~~Vt~l~~~---~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1107)
..+. .+.....|.++... .+..+++..+.+|.++-..++.-. ... ............+.+.
T Consensus 81 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~---------~~~--r~G~~~i~l~~~d~lv 149 (307)
T 1zi0_A 81 RGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFN---------RLR--TAGKVAIKLVDGDELI 149 (307)
T ss_dssp CCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGT---------TCC--TTCEESSCCCTTCCEE
T ss_pred CCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhh---------ccc--cCCeEEEEECCCCEEE
Confidence 2221 12333456666443 345689999999988777654210 000 0000000111114566
Q ss_pred EEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecC
Q 001287 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1107)
Q Consensus 181 ~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp 260 (1107)
.+.... ....+++.+.+|.+..++...-+.. +. .+.|- ....-.+...|.++... .
T Consensus 150 ~~~~~~--~~~~i~l~T~~G~~irf~~~~v~~~---gr-----------------~a~Gv-~~i~L~~~d~Vv~~~~~-~ 205 (307)
T 1zi0_A 150 GVDLTS--GEDEVMLFSAEGKVVRFKESSVRAM---GC-----------------NTTGV-RGIRLGEGDKVVSLIVP-R 205 (307)
T ss_dssp EEEEEC--TTCEEEEEETTSEEEEEEGGGSCBC---CT-----------------TCCCE-ECCCCCTTCCEEEEECC-C
T ss_pred EEEEeC--CCCEEEEECCCCcEEEEEHHHcCcc---CC-----------------CCCCe-EeEEeCCCCEEEEEEEe-c
Confidence 655432 3445889999998887776552211 10 00000 00011124456676644 4
Q ss_pred CCCEEEEEEcCCcEEEEeCC
Q 001287 261 SGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 261 dg~~l~sg~~dG~I~lWd~~ 280 (1107)
++..|++.+..|..+-.++.
T Consensus 206 ~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 206 GDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp SSCEEEEEETTSEEEEECGG
T ss_pred CCCEEEEEEcCCceEEEEHH
Confidence 56678899999998887764
No 390
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=25.38 E-value=4.2e+02 Score=29.87 Aligned_cols=57 Identities=7% Similarity=0.062 Sum_probs=37.6
Q ss_pred EEEEEEEeCCC-EEEEEeCCCcEEEEEcCCCe---eeeeec----------cCCCeEEEEEecC---CCEEEEE
Q 001287 79 YKNLEFLQNQG-FLISITNDNEIQVWSLESRS---LACCLK----------WESNITAFSVISG---SHFMYIG 135 (1107)
Q Consensus 79 V~~l~fs~d~~-~L~S~s~d~~I~vWDl~s~~---~~~~~~----------~~~~Vt~l~~~~~---~~~l~~g 135 (1107)
-..|+|.||+. +|+.+...|.|++++..... .+..+. .......|+++|+ ..+|++.
T Consensus 16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~ 89 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVS 89 (463)
T ss_dssp EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEE
T ss_pred ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEE
Confidence 46889999985 67777788999999754321 111111 1356788999987 4555554
No 391
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=24.87 E-value=88 Score=25.77 Aligned_cols=42 Identities=17% Similarity=0.086 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHHHHHHhhc
Q 001287 1056 VAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMEN 1101 (1107)
Q Consensus 1056 ~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~~ 1101 (1107)
.+...-..|++.+|+|. ||.++...+++-.+.|..+++.|++
T Consensus 38 ~G~~Tl~~L~~Q~Eql~----r~~~~ld~i~~~l~~a~k~L~~m~k 79 (79)
T 1n7s_C 38 AGIRTLVMLDEQGEQLD----RVEEGMNHINQDMKEAEKNLKDLGK 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhHH----HHHhHHHHHHhHHHHHHHHHhhhcC
Confidence 44445568999999997 5555666667777888899888764
No 392
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=23.45 E-value=2e+02 Score=22.46 Aligned_cols=48 Identities=10% Similarity=0.202 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHHHHHHhhc
Q 001287 1054 SSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMEN 1101 (1107)
Q Consensus 1054 ~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~~ 1101 (1107)
-..+...++-+.++.+|+=+=-++-+.|.+.+++.+..|....++.++
T Consensus 15 q~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~ 62 (65)
T 1gl2_A 15 QSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQK 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888899999999999999999999999999999999999887654
No 393
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=22.50 E-value=6.5e+02 Score=25.91 Aligned_cols=141 Identities=16% Similarity=0.141 Sum_probs=73.2
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCccee-eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeee-ee
Q 001287 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC-CL 114 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~-~~ 114 (1107)
.|..++.... ..+|. . ||.|+.|+....-.+ ....-...|..++...+ +.+..+ |+.|..|-......+. ..
T Consensus 64 ~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSS-EEEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 5666666543 34444 5 899999986432111 11111235777665544 455566 9999999865532221 11
Q ss_pred ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEE
Q 001287 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1107)
Q Consensus 115 ~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll 194 (1107)
.....|..++.- ..+.+.-. +|.|+.|-.... +.+- +|... ...|..|+--. ... ++
T Consensus 138 ~~~~~i~~i~~G--~~~~~~l~-~G~v~~wG~n~~-gqlg-----~p~~~-----------~~~v~~i~~G~--~hs-~a 194 (282)
T 3qhy_B 138 EAQSGVTALDGG--VYTALAVK-NGGVIAWGDNYF-GQTT-----VPAEA-----------QSGVDDVAGGI--FHS-LA 194 (282)
T ss_dssp GGGSSEEEEEEC--SSEEEEEE-TTEEEEEECCTT-STTS-----CCGGG-----------GSSEEEEEECS--SEE-EE
T ss_pred cCCCCeEEEEcc--cCEEEEEE-CCEEEEecCCCC-CCCC-----Cceec-----------CCCeEEEEecC--CEE-EE
Confidence 223456666543 33333333 798888876532 2221 11110 14477776622 222 33
Q ss_pred EEECCCeEEEEEcc
Q 001287 195 IAYENALVILWDVS 208 (1107)
Q Consensus 195 ~~~~dg~V~vwdl~ 208 (1107)
. .+|.|..|-..
T Consensus 195 l--~~G~v~~wG~n 206 (282)
T 3qhy_B 195 L--KDGKVIAWGDN 206 (282)
T ss_dssp E--ETTEEEEEECC
T ss_pred E--ECCeEEEEECC
Confidence 3 68888888543
No 394
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=21.72 E-value=7.8e+02 Score=26.57 Aligned_cols=109 Identities=18% Similarity=0.180 Sum_probs=64.2
Q ss_pred EEeCCCEEEEEeCCCcEEEEEcCCCee-----------eeeec--cCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCC
Q 001287 84 FLQNQGFLISITNDNEIQVWSLESRSL-----------ACCLK--WESNITAFSVISGSHFMYIGDENGLMSVIKYDADE 150 (1107)
Q Consensus 84 fs~d~~~L~S~s~d~~I~vWDl~s~~~-----------~~~~~--~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~ 150 (1107)
.+-...+.+....|+.|..|-....-. -..+. ....+..++++....+.+.-..+|.|+.|-....
T Consensus 58 i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~- 136 (389)
T 3kci_A 58 LIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAED- 136 (389)
T ss_dssp EEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGG-
T ss_pred EEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCC-
Confidence 344456778888999999997543211 01111 1234566777778888888889999999875431
Q ss_pred Cce-------eecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEcc
Q 001287 151 GKL-------FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVS 208 (1107)
Q Consensus 151 ~~l-------~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~ 208 (1107)
+.+ ...|..+... ....|..|+. -..+.++...+|.|..|-..
T Consensus 137 GqLG~g~~~~~~~p~~v~~l-----------~~~~i~~va~----G~~hs~alt~~G~v~~wG~n 186 (389)
T 3kci_A 137 GKLGHGNRSPCDRPRVIESL-----------RGIEVVDVAA----GGAHSACVTAAGDLYTWGKG 186 (389)
T ss_dssp GTTCSSSCCCEEEEEECGGG-----------TTSCEEEEEE----CSSEEEEEETTSCEEEEECC
T ss_pred CcCCCCCCccCcCCeEeccc-----------CCCeEEEEEe----CcCeEEEEeCCCeEEEeCCC
Confidence 111 1111112211 1135777766 23456777889998888643
No 395
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=21.15 E-value=1.6e+02 Score=22.08 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHHHHHH
Q 001287 1057 AAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKT 1098 (1107)
Q Consensus 1057 ~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~ 1098 (1107)
....-..|++.+|+|.+ |++.....++-.+.|..++..
T Consensus 16 g~~Tl~~L~~QgEql~r----~~~~ld~i~~~l~~a~k~L~~ 53 (54)
T 1nhl_A 16 GIKTITMLDEQKEQLNR----IEEGLDQINKDMRETEKTLTE 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhHhhHHH----HHhHHHHHHhHHHHHHHHHhc
Confidence 34455689999999975 555555566666777776653
Done!