Query 001289
Match_columns 1107
No_of_seqs 472 out of 3185
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 20:52:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001289.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001289hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0432 Valyl-tRNA synthetase 100.0 1E-270 2E-275 2332.7 85.1 967 122-1106 21-994 (995)
2 COG0525 ValS Valyl-tRNA synthe 100.0 1E-234 2E-239 2089.2 82.2 872 143-1104 1-876 (877)
3 PLN02381 valyl-tRNA synthetase 100.0 3E-231 7E-236 2171.5 100.3 1058 47-1106 1-1061(1066)
4 PTZ00419 valyl-tRNA synthetase 100.0 1E-214 3E-219 2030.9 95.7 956 136-1106 17-993 (995)
5 PRK05729 valS valyl-tRNA synth 100.0 2E-201 4E-206 1889.9 87.7 866 142-1104 4-873 (874)
6 PLN02943 aminoacyl-tRNA ligase 100.0 3E-197 6E-202 1852.9 89.2 875 142-1105 56-952 (958)
7 PRK14900 valS valyl-tRNA synth 100.0 6E-194 1E-198 1834.0 90.1 881 141-1105 13-905 (1052)
8 TIGR00422 valS valyl-tRNA synt 100.0 4E-193 9E-198 1815.4 85.3 856 143-1087 1-861 (861)
9 PTZ00427 isoleucine-tRNA ligas 100.0 6E-176 1E-180 1665.5 83.4 811 139-1011 64-1019(1205)
10 PRK06039 ileS isoleucyl-tRNA s 100.0 6E-175 1E-179 1658.3 84.8 838 140-1068 4-913 (975)
11 PLN02882 aminoacyl-tRNA ligase 100.0 2E-168 3E-173 1604.9 80.3 790 144-1012 5-894 (1159)
12 PLN02843 isoleucyl-tRNA synthe 100.0 7E-168 1E-172 1584.8 77.8 797 148-1012 4-901 (974)
13 PRK05743 ileS isoleucyl-tRNA s 100.0 5E-168 1E-172 1583.6 74.0 788 125-1011 7-857 (912)
14 PRK13208 valS valyl-tRNA synth 100.0 5E-167 1E-171 1566.4 75.8 782 142-1012 5-790 (800)
15 PRK13804 ileS isoleucyl-tRNA s 100.0 7E-167 1E-171 1576.1 77.4 790 125-1011 12-897 (961)
16 TIGR00392 ileS isoleucyl-tRNA 100.0 4E-161 8E-166 1525.2 70.1 760 143-973 2-839 (861)
17 COG0060 IleS Isoleucyl-tRNA sy 100.0 1E-161 3E-166 1471.2 59.2 754 125-964 6-824 (933)
18 PLN02959 aminoacyl-tRNA ligase 100.0 1E-145 2E-150 1392.0 66.3 725 143-967 9-920 (1084)
19 TIGR00395 leuS_arch leucyl-tRN 100.0 1E-143 3E-148 1364.9 64.9 731 151-992 2-841 (938)
20 PF00133 tRNA-synt_1: tRNA syn 100.0 6E-143 1E-147 1308.4 39.5 563 155-779 1-601 (601)
21 PRK12300 leuS leucyl-tRNA synt 100.0 1E-135 2E-140 1287.0 59.5 686 190-988 1-791 (897)
22 TIGR00396 leuS_bact leucyl-tRN 100.0 5E-134 1E-138 1261.7 48.2 644 147-940 1-775 (842)
23 PRK00390 leuS leucyl-tRNA synt 100.0 4E-133 8E-138 1252.0 50.1 649 143-959 1-754 (805)
24 PLN02563 aminoacyl-tRNA ligase 100.0 5E-133 1E-137 1253.0 46.0 642 143-941 76-891 (963)
25 KOG0433 Isoleucyl-tRNA synthet 100.0 3E-128 7E-133 1109.5 57.4 790 122-1008 17-878 (937)
26 KOG0434 Isoleucyl-tRNA synthet 100.0 4E-124 8E-129 1063.2 55.9 786 144-1012 5-882 (1070)
27 COG0495 LeuS Leucyl-tRNA synth 100.0 7E-105 2E-109 966.9 43.8 647 144-943 2-751 (814)
28 KOG0435 Leucyl-tRNA synthetase 100.0 1E-100 3E-105 874.2 39.1 647 151-940 34-797 (876)
29 PRK12268 methionyl-tRNA synthe 100.0 1.8E-87 3.9E-92 817.3 39.3 505 175-937 3-521 (556)
30 cd00817 ValRS_core catalytic c 100.0 8.1E-87 1.8E-91 773.8 34.4 380 175-778 1-382 (382)
31 TIGR00398 metG methionyl-tRNA 100.0 7.2E-86 1.6E-90 799.0 42.8 485 177-919 1-503 (530)
32 PRK00133 metG methionyl-tRNA s 100.0 1.9E-82 4.1E-87 784.8 43.1 484 175-919 2-503 (673)
33 KOG0437 Leucyl-tRNA synthetase 100.0 6.3E-83 1.4E-87 732.0 30.2 722 150-963 15-906 (1080)
34 PRK12267 methionyl-tRNA synthe 100.0 1E-81 2.2E-86 777.2 42.7 470 174-919 3-478 (648)
35 PLN02610 probable methionyl-tR 100.0 8.2E-80 1.8E-84 763.6 44.6 493 172-919 14-532 (801)
36 PRK11893 methionyl-tRNA synthe 100.0 3E-79 6.5E-84 739.1 41.8 464 175-919 1-476 (511)
37 PLN02224 methionine-tRNA ligas 100.0 5.7E-77 1.2E-81 719.2 42.1 478 162-919 51-546 (616)
38 cd00818 IleRS_core catalytic c 100.0 6.5E-77 1.4E-81 680.3 29.4 338 175-778 1-338 (338)
39 COG0143 MetG Methionyl-tRNA sy 100.0 4.3E-75 9.4E-80 688.2 40.5 492 174-920 4-513 (558)
40 cd00668 Ile_Leu_Val_MetRS_core 100.0 1.2E-66 2.5E-71 591.2 27.2 312 176-778 1-312 (312)
41 KOG0436 Methionyl-tRNA synthet 100.0 1.8E-62 3.9E-67 537.0 31.0 475 174-921 38-529 (578)
42 PF09334 tRNA-synt_1g: tRNA sy 100.0 4.3E-61 9.3E-66 558.0 16.7 375 177-801 1-391 (391)
43 cd00814 MetRS_core catalytic c 100.0 3.8E-59 8.2E-64 530.9 24.6 313 176-778 1-319 (319)
44 cd00812 LeuRS_core catalytic c 100.0 4.6E-55 9.9E-60 496.0 22.4 296 176-780 1-314 (314)
45 KOG1247 Methionyl-tRNA synthet 100.0 4.1E-43 8.8E-48 384.5 23.2 495 173-919 12-520 (567)
46 PRK00260 cysS cysteinyl-tRNA s 100.0 1.4E-41 3.1E-46 403.5 30.7 353 173-868 22-376 (463)
47 PTZ00399 cysteinyl-tRNA-synthe 100.0 2.5E-36 5.4E-41 368.6 41.3 380 166-867 53-437 (651)
48 TIGR00435 cysS cysteinyl-tRNA 100.0 4E-36 8.7E-41 356.3 26.6 356 166-857 14-371 (465)
49 PRK12418 cysteinyl-tRNA synthe 100.0 1.3E-34 2.8E-39 332.1 22.3 342 175-867 10-363 (384)
50 TIGR03447 mycothiol_MshC cyste 100.0 1.5E-34 3.3E-39 332.7 20.0 336 174-857 36-382 (411)
51 PRK14536 cysS cysteinyl-tRNA s 100.0 1.2E-31 2.6E-36 315.8 25.6 355 183-857 30-399 (490)
52 PLN02946 cysteine-tRNA ligase 100.0 6.2E-31 1.4E-35 312.5 23.2 360 175-867 81-443 (557)
53 PRK14535 cysS cysteinyl-tRNA s 100.0 1.6E-30 3.4E-35 309.8 23.3 334 183-857 255-607 (699)
54 cd00672 CysRS_core catalytic c 100.0 3.8E-30 8.3E-35 275.5 16.4 94 166-279 13-107 (213)
55 PRK01611 argS arginyl-tRNA syn 100.0 1.7E-28 3.8E-33 295.5 29.6 119 173-310 109-227 (507)
56 PRK14534 cysS cysteinyl-tRNA s 100.0 1E-28 2.2E-33 289.7 24.2 354 179-857 24-392 (481)
57 cd07961 Anticodon_Ia_Ile_ABEc 99.9 1.1E-26 2.3E-31 244.3 19.8 179 778-961 1-183 (183)
58 cd00674 LysRS_core_class_I cat 99.9 1.1E-26 2.4E-31 264.4 20.0 124 174-309 18-150 (353)
59 cd07960 Anticodon_Ia_Ile_BEm A 99.9 1.5E-24 3.3E-29 227.4 20.6 176 778-960 1-179 (180)
60 COG0215 CysS Cysteinyl-tRNA sy 99.9 6.5E-24 1.4E-28 244.1 18.9 146 656-857 222-368 (464)
61 PF08264 Anticodon_1: Anticodo 99.9 2.4E-22 5.1E-27 204.6 15.1 150 823-980 1-151 (153)
62 PRK00750 lysK lysyl-tRNA synth 99.9 2.1E-22 4.5E-27 241.6 16.1 125 174-308 22-155 (510)
63 PF13603 tRNA-synt_1_2: Leucyl 99.9 9.6E-23 2.1E-27 212.1 10.2 127 356-485 10-185 (185)
64 PF01406 tRNA-synt_1e: tRNA sy 99.9 4.4E-23 9.5E-28 227.1 7.6 123 176-320 10-133 (300)
65 TIGR00456 argS arginyl-tRNA sy 99.9 1.5E-19 3.2E-24 220.7 34.0 220 662-903 335-559 (566)
66 KOG2007 Cysteinyl-tRNA synthet 99.8 1E-18 2.2E-23 198.1 27.1 168 656-870 259-428 (586)
67 COG0018 ArgS Arginyl-tRNA synt 99.8 6.9E-16 1.5E-20 186.1 33.9 214 662-903 342-570 (577)
68 TIGR00467 lysS_arch lysyl-tRNA 99.7 8.3E-17 1.8E-21 192.2 18.4 97 175-280 18-122 (515)
69 PRK12451 arginyl-tRNA syntheta 99.7 3.1E-14 6.6E-19 173.8 37.0 208 662-903 332-555 (562)
70 cd07962 Anticodon_Ia_Val Antic 99.7 1E-15 2.2E-20 153.2 15.9 135 778-917 1-135 (135)
71 PLN02286 arginine-tRNA ligase 99.6 3.5E-13 7.6E-18 164.7 38.0 214 662-903 335-569 (576)
72 cd00671 ArgRS_core catalytic c 99.6 2.6E-15 5.7E-20 161.7 13.8 122 177-321 2-124 (212)
73 cd07959 Anticodon_Ia_Leu_AEc A 99.6 6.1E-15 1.3E-19 143.2 14.6 116 778-917 1-117 (117)
74 cd07958 Anticodon_Ia_Leu_BEm A 99.6 3E-14 6.5E-19 138.0 13.5 117 778-917 1-117 (117)
75 cd07957 Anticodon_Ia_Met Antic 99.5 1.3E-13 2.7E-18 135.9 13.8 124 783-917 6-129 (129)
76 PF10458 Val_tRNA-synt_C: Valy 99.3 7.1E-12 1.5E-16 109.7 7.9 66 1039-1104 1-66 (66)
77 PF00750 tRNA-synt_1d: tRNA sy 99.3 6.9E-11 1.5E-15 137.0 17.1 138 172-312 17-194 (354)
78 cd07375 Anticodon_Ia_like Anti 99.2 8.8E-11 1.9E-15 113.0 13.3 116 781-906 2-117 (117)
79 cd00802 class_I_aaRS_core cata 99.0 4.1E-10 8.9E-15 113.9 7.9 77 179-272 1-77 (143)
80 PF01921 tRNA-synt_1f: tRNA sy 98.6 9.4E-08 2E-12 109.0 9.1 99 174-280 22-128 (360)
81 COG1384 LysS Lysyl-tRNA synthe 98.5 1.2E-06 2.6E-11 102.7 13.9 98 175-279 19-124 (521)
82 PRK01406 gltX glutamyl-tRNA sy 98.3 2.1E-05 4.6E-10 94.7 17.5 95 179-312 6-108 (476)
83 cd09287 GluRS_non_core catalyt 97.9 2.1E-05 4.6E-10 85.9 7.7 92 182-310 6-97 (240)
84 PRK04156 gltX glutamyl-tRNA sy 97.8 5E-05 1.1E-09 92.3 8.5 96 180-312 104-199 (567)
85 TIGR03838 queuosine_YadB gluta 97.6 0.00021 4.6E-09 79.8 9.0 91 183-312 6-97 (272)
86 PLN03233 putative glutamate-tR 97.6 0.00022 4.8E-09 85.8 9.6 96 178-312 12-107 (523)
87 PTZ00437 glutaminyl-tRNA synth 97.5 0.00028 6E-09 85.2 9.7 96 178-312 52-147 (574)
88 TIGR00463 gltX_arch glutamyl-t 97.5 0.00038 8.2E-09 84.7 10.7 96 178-312 94-189 (560)
89 PF00749 tRNA-synt_1c: tRNA sy 97.5 0.00031 6.8E-09 80.5 9.3 92 183-312 7-98 (314)
90 KOG4426 Arginyl-tRNA synthetas 97.5 0.06 1.3E-06 62.1 26.8 163 688-867 433-611 (656)
91 PLN02907 glutamate-tRNA ligase 97.4 0.00055 1.2E-08 86.1 10.8 94 178-310 214-307 (722)
92 TIGR00440 glnS glutaminyl-tRNA 97.4 0.00045 9.7E-09 83.3 9.3 93 182-312 5-97 (522)
93 PTZ00402 glutamyl-tRNA synthet 97.4 0.0004 8.7E-09 84.5 8.9 93 178-309 53-146 (601)
94 cd00807 GlnRS_core catalytic c 97.4 0.00061 1.3E-08 74.4 9.0 92 180-310 4-95 (238)
95 PLN02859 glutamine-tRNA ligase 97.3 0.00063 1.4E-08 84.8 9.8 96 178-312 265-360 (788)
96 PRK05710 glutamyl-Q tRNA(Asp) 97.3 0.00063 1.4E-08 77.0 8.8 95 179-312 7-102 (299)
97 PRK05347 glutaminyl-tRNA synth 97.3 0.00061 1.3E-08 82.4 9.0 97 178-312 30-126 (554)
98 COG0008 GlnS Glutamyl- and glu 97.3 0.00072 1.6E-08 80.9 9.2 96 178-312 10-106 (472)
99 PRK14895 gltX glutamyl-tRNA sy 97.3 0.0008 1.7E-08 81.0 9.3 94 180-312 7-101 (513)
100 PRK12558 glutamyl-tRNA synthet 97.2 0.0008 1.7E-08 80.0 8.9 94 180-312 5-98 (445)
101 PRK12410 glutamylglutaminyl-tR 97.2 0.00084 1.8E-08 79.5 8.8 91 183-312 5-95 (433)
102 PRK14703 glutaminyl-tRNA synth 97.2 0.00084 1.8E-08 84.5 8.3 96 178-312 32-128 (771)
103 cd00418 GlxRS_core catalytic c 97.1 0.0018 4E-08 70.6 8.8 86 182-306 6-92 (230)
104 TIGR00464 gltX_bact glutamyl-t 97.0 0.0017 3.6E-08 78.5 9.1 92 182-312 6-98 (470)
105 cd00808 GluRS_core catalytic c 97.0 0.0021 4.6E-08 70.6 8.9 86 182-306 6-100 (239)
106 PLN02627 glutamyl-tRNA synthet 96.9 0.0026 5.7E-08 76.8 9.3 96 178-312 46-150 (535)
107 cd07956 Anticodon_Ia_Arg Antic 95.9 0.26 5.6E-06 50.7 15.3 139 756-903 2-149 (156)
108 cd00805 TyrRS_core catalytic c 95.1 0.033 7.1E-07 62.7 5.9 58 656-718 152-210 (269)
109 KOG1147 Glutamyl-tRNA syntheta 94.9 0.063 1.4E-06 63.6 7.5 98 178-314 201-298 (712)
110 cd00395 Tyr_Trp_RS_core cataly 94.9 0.049 1.1E-06 61.4 6.6 61 654-718 152-214 (273)
111 PRK13354 tyrosyl-tRNA syntheta 94.5 0.032 6.9E-07 66.4 4.1 59 654-716 185-244 (410)
112 PRK05912 tyrosyl-tRNA syntheta 93.8 0.047 1E-06 64.9 3.7 59 654-716 187-246 (408)
113 cd00802 class_I_aaRS_core cata 92.9 0.1 2.3E-06 52.7 4.0 50 656-707 94-143 (143)
114 PF00579 tRNA-synt_1b: tRNA sy 92.9 0.36 7.8E-06 54.9 8.8 62 655-716 149-213 (292)
115 cd00418 GlxRS_core catalytic c 92.8 0.4 8.6E-06 52.7 8.5 22 688-709 139-160 (230)
116 PRK12556 tryptophanyl-tRNA syn 92.6 0.11 2.4E-06 60.2 4.2 59 654-713 148-213 (332)
117 KOG1148 Glutaminyl-tRNA synthe 92.0 0.4 8.7E-06 57.6 7.7 97 177-312 248-344 (764)
118 KOG1195 Arginyl-tRNA synthetas 91.9 2.2 4.8E-05 50.9 13.5 153 152-308 87-275 (567)
119 PRK12284 tryptophanyl-tRNA syn 91.2 0.16 3.4E-06 60.3 3.4 60 654-714 147-214 (431)
120 PRK08560 tyrosyl-tRNA syntheta 90.9 0.17 3.7E-06 58.6 3.3 59 654-716 167-229 (329)
121 PRK12283 tryptophanyl-tRNA syn 90.2 0.36 7.8E-06 56.8 5.1 25 691-715 253-277 (398)
122 COG0495 LeuS Leucyl-tRNA synth 89.9 0.25 5.4E-06 63.0 3.7 82 478-564 138-234 (814)
123 cd00808 GluRS_core catalytic c 89.9 0.62 1.3E-05 51.5 6.4 51 656-709 119-169 (239)
124 TIGR00233 trpS tryptophanyl-tR 89.5 0.25 5.5E-06 57.2 3.1 60 654-715 138-206 (328)
125 PRK12285 tryptophanyl-tRNA syn 88.9 0.26 5.7E-06 57.8 2.7 59 655-715 203-265 (368)
126 PRK12282 tryptophanyl-tRNA syn 88.8 0.35 7.6E-06 56.1 3.7 62 654-715 141-209 (333)
127 COG0180 TrpS Tryptophanyl-tRNA 88.8 0.38 8.2E-06 54.9 3.8 60 655-714 145-211 (314)
128 PLN02563 aminoacyl-tRNA ligase 88.8 0.5 1.1E-05 62.1 5.3 81 475-561 212-306 (963)
129 COG0162 TyrS Tyrosyl-tRNA synt 87.5 1 2.3E-05 53.3 6.4 52 656-711 181-233 (401)
130 PTZ00126 tyrosyl-tRNA syntheta 87.0 0.53 1.1E-05 55.6 3.7 59 654-715 209-271 (383)
131 TIGR00234 tyrS tyrosyl-tRNA sy 86.8 0.62 1.3E-05 55.0 4.1 56 656-715 178-234 (377)
132 PRK14900 valS valyl-tRNA synth 86.5 0.67 1.5E-05 61.7 4.6 60 1038-1098 845-905 (1052)
133 cd00806 TrpRS_core catalytic c 85.9 0.66 1.4E-05 52.6 3.6 60 656-715 138-205 (280)
134 PF15188 CCDC-167: Coiled-coil 84.9 4.6 0.0001 37.4 7.8 62 1040-1105 3-64 (85)
135 TIGR00396 leuS_bact leucyl-tRN 82.9 0.71 1.5E-05 60.1 2.5 83 475-562 130-227 (842)
136 PRK00927 tryptophanyl-tRNA syn 82.6 0.89 1.9E-05 52.9 2.9 61 654-715 137-209 (333)
137 TIGR00464 gltX_bact glutamyl-t 81.7 3.6 7.9E-05 50.1 7.7 110 657-785 199-310 (470)
138 PRK00390 leuS leucyl-tRNA synt 80.5 2.3 5E-05 55.2 5.9 101 474-579 132-247 (805)
139 PRK04156 gltX glutamyl-tRNA sy 80.2 4.7 0.0001 49.9 8.0 78 687-792 324-408 (567)
140 cd00807 GlnRS_core catalytic c 78.7 6.5 0.00014 43.5 7.7 31 756-786 197-227 (238)
141 cd00395 Tyr_Trp_RS_core cataly 78.6 2.6 5.7E-05 47.6 4.8 34 186-223 8-42 (273)
142 KOG0435 Leucyl-tRNA synthetase 77.9 0.78 1.7E-05 56.2 0.4 52 500-557 198-249 (876)
143 PRK12285 tryptophanyl-tRNA syn 76.8 12 0.00027 44.1 9.8 61 158-223 40-108 (368)
144 PLN02486 aminoacyl-tRNA ligase 75.0 8 0.00017 45.8 7.6 58 160-222 49-115 (383)
145 cd00671 ArgRS_core catalytic c 75.0 3.7 8E-05 44.5 4.6 50 658-708 162-212 (212)
146 cd00806 TrpRS_core catalytic c 74.9 6.8 0.00015 44.5 6.8 36 185-223 7-42 (280)
147 PF02388 FemAB: FemAB family; 73.7 9.2 0.0002 45.8 7.9 61 1034-1105 233-294 (406)
148 KOG1195 Arginyl-tRNA synthetas 73.1 94 0.002 37.9 15.5 192 684-902 355-559 (567)
149 cd00805 TyrRS_core catalytic c 71.7 3.3 7E-05 46.8 3.3 72 185-278 8-82 (269)
150 PLN02486 aminoacyl-tRNA ligase 70.6 4.4 9.6E-05 47.9 4.2 54 658-715 222-279 (383)
151 PTZ00348 tyrosyl-tRNA syntheta 69.0 4.1 8.9E-05 51.5 3.6 58 654-715 174-236 (682)
152 PF05746 DALR_1: DALR anticodo 69.0 26 0.00057 33.8 8.6 81 820-903 32-112 (119)
153 KOG1149 Glutamyl-tRNA syntheta 68.4 24 0.00052 41.8 9.2 94 183-312 39-138 (524)
154 PRK12410 glutamylglutaminyl-tR 66.6 15 0.00033 44.2 7.5 22 688-709 221-242 (433)
155 PF03962 Mnd1: Mnd1 family; I 63.6 38 0.00081 36.3 9.1 75 1030-1105 53-131 (188)
156 cd09287 GluRS_non_core catalyt 62.7 24 0.00051 39.3 7.6 30 756-785 199-228 (240)
157 PRK14895 gltX glutamyl-tRNA sy 62.4 17 0.00036 44.7 6.9 51 657-710 198-248 (513)
158 PF01927 Mut7-C: Mut7-C RNAse 62.2 6.7 0.00015 40.1 3.1 23 204-226 12-34 (147)
159 PRK13354 tyrosyl-tRNA syntheta 61.6 15 0.00033 43.9 6.4 45 175-224 32-77 (410)
160 PF07106 TBPIP: Tat binding pr 60.7 61 0.0013 33.8 10.0 62 1039-1105 76-137 (169)
161 PLN03233 putative glutamate-tR 60.6 24 0.00053 43.4 7.9 76 690-792 234-316 (523)
162 COG0162 TyrS Tyrosyl-tRNA synt 59.6 12 0.00026 44.6 4.9 32 186-221 41-73 (401)
163 TIGR00234 tyrS tyrosyl-tRNA sy 59.1 7.5 0.00016 46.0 3.2 41 177-222 31-72 (377)
164 PF14282 FlxA: FlxA-like prote 57.9 48 0.001 32.1 7.9 56 1039-1104 16-71 (106)
165 PRK08560 tyrosyl-tRNA syntheta 55.6 9.2 0.0002 44.5 3.1 43 176-223 30-72 (329)
166 PF05008 V-SNARE: Vesicle tran 54.3 1E+02 0.0022 27.7 9.1 56 1040-1101 23-78 (79)
167 PRK11020 hypothetical protein; 52.9 33 0.00071 33.4 5.6 50 1039-1104 2-51 (118)
168 PF14257 DUF4349: Domain of un 52.5 57 0.0012 36.5 8.7 63 1038-1105 128-190 (262)
169 KOG2916 Translation initiation 51.8 47 0.001 36.9 7.4 47 1038-1088 234-280 (304)
170 PLN02886 aminoacyl-tRNA ligase 51.3 14 0.00029 43.9 3.6 60 654-714 183-266 (389)
171 TIGR00463 gltX_arch glutamyl-t 51.0 38 0.00083 42.2 7.5 72 687-786 314-392 (560)
172 PRK10636 putative ABC transpor 49.7 59 0.0013 41.4 9.2 63 1041-1103 562-631 (638)
173 PRK05912 tyrosyl-tRNA syntheta 49.2 14 0.0003 44.4 3.2 41 176-221 33-74 (408)
174 PRK12558 glutamyl-tRNA synthet 49.0 47 0.001 40.3 7.7 22 688-709 226-247 (445)
175 PF00579 tRNA-synt_1b: tRNA sy 46.4 10 0.00023 43.1 1.6 43 176-223 5-47 (292)
176 PRK12284 tryptophanyl-tRNA syn 46.1 36 0.00077 41.0 5.9 97 186-311 11-108 (431)
177 TIGR00440 glnS glutaminyl-tRNA 44.9 43 0.00093 41.3 6.5 72 684-785 226-303 (522)
178 PF11336 DUF3138: Protein of u 43.7 77 0.0017 37.7 7.9 61 1041-1101 24-107 (514)
179 TIGR00233 trpS tryptophanyl-tR 42.3 15 0.00032 42.8 2.0 41 178-223 4-44 (328)
180 PTZ00402 glutamyl-tRNA synthet 42.2 68 0.0015 40.2 7.7 37 756-792 321-358 (601)
181 COG2348 Peptidoglycan interpep 42.0 54 0.0012 39.3 6.6 62 1032-1101 235-297 (418)
182 PF14389 Lzipper-MIP1: Leucine 42.0 2.1E+02 0.0046 26.8 9.2 66 1038-1104 11-81 (88)
183 COG4372 Uncharacterized protei 41.9 67 0.0015 37.5 6.9 66 1040-1105 215-280 (499)
184 PRK00927 tryptophanyl-tRNA syn 41.3 16 0.00035 42.5 2.1 32 185-220 9-40 (333)
185 PRK05347 glutaminyl-tRNA synth 40.7 85 0.0018 39.1 8.1 31 756-786 303-333 (554)
186 KOG3990 Uncharacterized conser 40.2 1.1E+02 0.0023 34.0 7.7 63 1039-1105 229-295 (305)
187 PLN02859 glutamine-tRNA ligase 39.6 69 0.0015 41.4 7.3 64 695-785 492-562 (788)
188 cd00089 HR1 Protein kinase C-r 39.0 1.5E+02 0.0033 26.3 7.6 64 1041-1106 8-71 (72)
189 cd00890 Prefoldin Prefoldin is 38.2 3.9E+02 0.0084 26.0 15.0 38 1029-1066 68-111 (129)
190 KOG2145 Cytoplasmic tryptophan 38.2 32 0.00069 38.8 3.6 26 173-198 82-107 (397)
191 PRK05710 glutamyl-Q tRNA(Asp) 37.0 34 0.00074 39.2 3.8 29 680-710 216-244 (299)
192 PLN02886 aminoacyl-tRNA ligase 36.6 23 0.00051 42.0 2.5 29 186-218 55-83 (389)
193 cd06545 GH18_3CO4_chitinase Th 35.4 1.2E+02 0.0026 33.6 7.9 102 184-308 33-134 (253)
194 smart00836 DALR_1 DALR anticod 35.2 3.1E+02 0.0067 26.4 9.9 80 821-903 36-115 (122)
195 PF07544 Med9: RNA polymerase 34.3 1.3E+02 0.0029 27.7 6.5 57 1038-1105 24-80 (83)
196 PF04918 DltD_M: DltD central 34.2 33 0.00071 35.8 2.9 25 506-531 23-47 (163)
197 PRK12556 tryptophanyl-tRNA syn 33.9 31 0.00068 40.2 3.0 36 186-223 12-47 (332)
198 KOG2185 Predicted RNA-processi 33.0 89 0.0019 36.8 6.2 60 1035-1105 412-472 (486)
199 PLN02627 glutamyl-tRNA synthet 33.0 98 0.0021 38.4 7.0 30 678-709 271-300 (535)
200 PF08287 DASH_Spc19: Spc19; I 32.6 1.8E+02 0.004 30.1 7.9 64 1040-1103 73-153 (153)
201 COG1656 Uncharacterized conser 32.4 1.2E+02 0.0026 31.7 6.5 91 204-327 18-109 (165)
202 PF12761 End3: Actin cytoskele 31.9 1.7E+02 0.0036 31.6 7.6 29 1039-1067 93-121 (195)
203 COG0008 GlnS Glutamyl- and glu 31.9 1.1E+02 0.0024 37.4 7.2 26 687-713 235-260 (472)
204 KOG2144 Tyrosyl-tRNA synthetas 31.9 53 0.0011 37.2 4.0 56 654-718 176-233 (360)
205 PF10153 DUF2361: Uncharacteri 31.5 1.4E+02 0.003 29.5 6.4 41 1054-1098 2-42 (114)
206 PF03938 OmpH: Outer membrane 31.5 2.4E+02 0.0052 28.7 8.8 60 1039-1100 40-99 (158)
207 PTZ00437 glutaminyl-tRNA synth 31.4 58 0.0013 40.5 4.7 73 696-795 280-359 (574)
208 PLN02381 valyl-tRNA synthetase 31.2 66 0.0014 43.4 5.6 64 1038-1104 987-1052(1066)
209 COG3879 Uncharacterized protei 30.9 1.6E+02 0.0035 32.8 7.5 54 1038-1101 53-106 (247)
210 PRK12283 tryptophanyl-tRNA syn 30.2 32 0.00069 41.0 2.2 28 186-218 11-39 (398)
211 PF10805 DUF2730: Protein of u 29.8 2.6E+02 0.0057 27.0 8.1 58 1041-1104 34-92 (106)
212 PRK11147 ABC transporter ATPas 29.6 1.7E+02 0.0037 37.2 8.7 60 1043-1103 569-628 (635)
213 PRK11637 AmiB activator; Provi 29.4 91 0.002 37.6 6.0 20 1083-1102 95-114 (428)
214 TIGR03838 queuosine_YadB gluta 28.7 50 0.0011 37.4 3.3 26 683-710 212-237 (272)
215 COG0180 TrpS Tryptophanyl-tRNA 28.6 31 0.00067 39.8 1.7 46 176-227 5-51 (314)
216 PF06696 Strep_SA_rep: Strepto 28.6 1E+02 0.0022 22.2 3.5 21 1083-1103 4-24 (25)
217 cd03016 PRX_1cys Peroxiredoxin 28.4 62 0.0013 34.8 3.9 56 450-512 119-175 (203)
218 PF14712 Snapin_Pallidin: Snap 28.2 2.2E+02 0.0047 26.4 7.1 66 1039-1105 18-85 (92)
219 PTZ00126 tyrosyl-tRNA syntheta 28.1 48 0.001 39.4 3.2 40 177-220 67-106 (383)
220 PF02185 HR1: Hr1 repeat; Int 27.0 1.9E+02 0.004 25.6 6.1 59 1044-1105 3-61 (70)
221 TIGR00414 serS seryl-tRNA synt 26.9 1.6E+02 0.0035 35.5 7.4 30 1038-1067 33-62 (418)
222 PF05524 PEP-utilisers_N: PEP- 26.8 1.3E+02 0.0028 29.4 5.6 48 1038-1087 31-78 (123)
223 COG2433 Uncharacterized conser 26.8 1.4E+02 0.0029 37.3 6.6 66 1040-1105 441-509 (652)
224 PRK05431 seryl-tRNA synthetase 26.7 1.3E+02 0.0029 36.2 6.7 30 1038-1067 31-60 (425)
225 PF08657 DASH_Spc34: DASH comp 26.4 1.2E+02 0.0026 34.2 5.8 59 1038-1096 190-258 (259)
226 COG1937 Uncharacterized protei 26.3 2.7E+02 0.0059 26.3 7.1 32 1041-1072 5-36 (89)
227 KOG2129 Uncharacterized conser 26.2 2.7E+02 0.0059 33.0 8.5 61 1042-1102 201-271 (552)
228 PRK11637 AmiB activator; Provi 25.9 1.1E+02 0.0025 36.8 6.0 21 1081-1101 100-120 (428)
229 PF02403 Seryl_tRNA_N: Seryl-t 25.7 1.5E+02 0.0032 28.4 5.6 65 1038-1103 32-100 (108)
230 PRK13729 conjugal transfer pil 25.6 1.6E+02 0.0034 35.9 6.8 25 1080-1104 100-124 (475)
231 PTZ00348 tyrosyl-tRNA syntheta 25.5 50 0.0011 42.1 2.9 41 175-220 31-72 (682)
232 PF11559 ADIP: Afadin- and alp 25.2 1.7E+02 0.0036 29.9 6.2 22 1080-1101 104-125 (151)
233 COG3883 Uncharacterized protei 24.9 2.2E+02 0.0048 32.2 7.4 24 1079-1102 75-98 (265)
234 PF01920 Prefoldin_2: Prefoldi 24.9 2.3E+02 0.0051 26.6 6.8 34 1070-1103 55-88 (106)
235 PRK13599 putative peroxiredoxi 24.8 58 0.0012 35.5 2.9 52 448-506 119-171 (215)
236 PF02996 Prefoldin: Prefoldin 24.7 6.3E+02 0.014 24.3 10.5 29 1038-1066 73-101 (120)
237 PF00749 tRNA-synt_1c: tRNA sy 24.5 72 0.0016 36.9 3.7 51 658-711 202-252 (314)
238 PRK10884 SH3 domain-containing 24.2 1.9E+02 0.0041 31.5 6.6 22 1042-1063 93-114 (206)
239 PLN02678 seryl-tRNA synthetase 24.1 1.7E+02 0.0036 35.7 6.8 30 1038-1067 36-65 (448)
240 PF03961 DUF342: Protein of un 23.8 2E+02 0.0043 35.0 7.5 37 1030-1066 321-358 (451)
241 PLN02320 seryl-tRNA synthetase 23.7 1.8E+02 0.0039 35.9 7.0 30 1038-1067 96-125 (502)
242 PRK03947 prefoldin subunit alp 23.7 7.5E+02 0.016 24.8 14.3 29 1038-1066 90-118 (140)
243 PRK13182 racA polar chromosome 23.6 2.8E+02 0.0061 29.4 7.6 59 1045-1105 88-146 (175)
244 COG3883 Uncharacterized protei 23.6 2.2E+02 0.0047 32.2 7.0 60 1039-1105 35-94 (265)
245 KOG0614 cGMP-dependent protein 23.3 60 0.0013 39.6 2.7 27 289-315 523-549 (732)
246 PF13851 GAS: Growth-arrest sp 23.0 3.1E+02 0.0067 29.7 8.0 30 1038-1067 51-80 (201)
247 PF04102 SlyX: SlyX; InterPro 23.0 3.8E+02 0.0082 23.8 7.2 51 1040-1104 2-52 (69)
248 PLN02907 glutamate-tRNA ligase 22.5 2.2E+02 0.0047 36.9 7.7 37 756-792 481-518 (722)
249 PF03962 Mnd1: Mnd1 family; I 22.3 3E+02 0.0064 29.5 7.6 60 1042-1104 103-162 (188)
250 KOG3564 GTPase-activating prot 22.1 2E+02 0.0042 34.9 6.5 68 1038-1105 38-105 (604)
251 PF10653 Phage-A118_gp45: Prot 22.1 66 0.0014 26.8 1.9 34 1059-1094 20-53 (62)
252 PRK14703 glutaminyl-tRNA synth 21.8 2.3E+02 0.005 36.9 7.7 37 756-792 306-343 (771)
253 PF12329 TMF_DNA_bd: TATA elem 21.6 3.9E+02 0.0084 24.2 7.0 54 1042-1102 19-72 (74)
254 KOG2623 Tyrosyl-tRNA synthetas 21.4 75 0.0016 37.5 3.0 59 654-717 226-288 (467)
255 PF08317 Spc7: Spc7 kinetochor 21.2 3.4E+02 0.0075 31.5 8.5 22 1045-1066 180-201 (325)
256 PRK12282 tryptophanyl-tRNA syn 21.2 48 0.001 38.7 1.4 15 186-200 11-25 (333)
257 PF04977 DivIC: Septum formati 20.8 1.9E+02 0.0041 25.7 5.0 30 1038-1067 20-49 (80)
258 PF04420 CHD5: CHD5-like prote 20.5 4.2E+02 0.009 27.6 8.1 51 1046-1102 37-91 (161)
259 TIGR03185 DNA_S_dndD DNA sulfu 20.2 2.8E+02 0.006 35.5 8.1 56 1040-1100 389-444 (650)
260 PRK10884 SH3 domain-containing 20.0 4.1E+02 0.0089 28.9 8.1 28 1039-1066 97-124 (206)
261 PF12718 Tropomyosin_1: Tropom 20.0 2.9E+02 0.0063 28.2 6.7 30 1038-1067 31-60 (143)
No 1
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.6e-271 Score=2332.69 Aligned_cols=967 Identities=58% Similarity=0.995 Sum_probs=928.2
Q ss_pred CCCCccCCCCCcccccccchhhhcCCCchhHHHHHHHHHHhcCCcccCCC-CCCCcEEEECCCCCCCCCCCchhhHHhHH
Q 001289 122 NAEEFVDPETPLGEKKRMSKQMAKEYNPSSVEKSWYSWWENSGYFIADNK-SSKPSFVIVLPPPNVTGALHIGHALTTAI 200 (1107)
Q Consensus 122 ~~~~~~~~~t~~~~k~~~~~~~~~~y~p~~vE~~w~~~W~~~~~f~~~~~-~~k~~f~i~~pPPyvnG~LHiGHal~~~i 200 (1107)
++...+.+.|++|+||+++.+++++|+|..||.+||.||+++|+|+|+.. ...+.|+|+.|||||||.||||||++.+|
T Consensus 21 ~~~~~~~~~t~~ge~k~~~~~~~~~y~p~~vE~~wy~ww~k~g~fkp~~~~~~~~~f~i~~PPPNVTG~LHiGHALt~ai 100 (995)
T KOG0432|consen 21 EEVASYVPSTAPGEKKDLSGPLPAAYSPAYVESAWYKWWEKQGFFKPEYGPNPGGVFVIPLPPPNVTGSLHIGHALTVAI 100 (995)
T ss_pred CCcccccCCCCcchhhccCCcccccCCccchHHHHHHHHHHcCCCCcccCCCCCCcceeecCCCCcccccchhHHHHHHH
Confidence 45578899999999999999999999999999999999999999999986 34569999999999999999999999999
Q ss_pred HHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 001289 201 QDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDW 280 (1107)
Q Consensus 201 ~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW 280 (1107)
+|+++||+||+||+|+|+||+|||||+||++|||+|+++.|++||++|||+|+++||+|+++|+++|.+||++||+|+||
T Consensus 101 qD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW 180 (995)
T KOG0432|consen 101 QDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEEYGGRIYNQLKRLGASLDW 180 (995)
T ss_pred HHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHhCccHHHHHHHhcCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCcccccccccccccCCcceeeecCcccccccceEEEEee
Q 001289 281 SRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAY 360 (1107)
Q Consensus 281 ~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~e~~~~t~~~vp~y~~~~~~g~l~~~~y 360 (1107)
+|++|||||+.+++|.++|++||++|+|||++|+|||||.++|+|||+||+++++.++|++.||||+.+|+||+|++|+|
T Consensus 181 ~re~fTmD~~~s~AV~eAFvrL~eeglIyR~~rlVNW~~~L~saiSdiEVe~~ei~~~t~l~vpGyd~~VeFG~L~~faY 260 (995)
T KOG0432|consen 181 DREAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCPALRSAISDIEVESVEIPGRTLLSVPGYDTKVEFGVLYSFAY 260 (995)
T ss_pred cHhhcccCHHHHHHHHHHHHHHHhcCceEecCceeeechhHHhhhhhheecceecCCCceEecCCCCcceeeeeeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEecCCCCCccceEecCccccCCCCCCceecCCCCCcchH
Q 001289 361 PLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDF 440 (1107)
Q Consensus 361 ~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~P~~~~~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~ 440 (1107)
+++|+++.|+|+|||||||+||+||||||+|+||+|+||++++|||++|.+|||+|. +|||+|||||||||||||+|||
T Consensus 261 ~v~gs~~~i~VaTTRpET~lGDvAvAVhP~D~RYk~lhGk~~~hP~~~r~lPiI~D~-~Vd~~fGTGaVKITPaHd~nDy 339 (995)
T KOG0432|consen 261 PVEGSDEEIVVATTRPETILGDVAVAVHPDDDRYKHLHGKFVKHPFTGRKLPIICDI-AVDMEFGTGAVKITPAHDPNDY 339 (995)
T ss_pred eccCCCCeEEEecCCccccccceeEEeCCCCcccccccCceeecCCCCCccceeecc-cccccccccceEecCCCChhHH
Confidence 999999999999999999999999999999999999999999999999999999997 5999999999999999999999
Q ss_pred HHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCeeceeccccccceeccCCCeeEecccccccc
Q 001289 441 DVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYV 520 (1107)
Q Consensus 441 ~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv 520 (1107)
++|+||||++++||++||.|+..|| +|+||+||+||++|++.|++.|+|++.++|+|++|+|+||||+|||+++|||||
T Consensus 340 EvgkRh~L~~~ni~~~dG~l~~~~g-ef~Gm~RFeAR~kvv~~L~e~gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v 418 (995)
T KOG0432|consen 340 EVGKRHNLEFINIFTDDGLLNNVCG-EFKGMKRFEAREKVVEKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFV 418 (995)
T ss_pred HHHHhcCCCceeEEcCCCceeccch-hccCcHHHHHHHHHHHHHHHhhhhhccCCCceeccccCCCCCcccccccchhee
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeecCCCcccceeEEEccCcchhhccCCCCCceEEec
Q 001289 521 NCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVAR 600 (1107)
Q Consensus 521 ~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~ 600 (1107)
+|++|+++|+++| ++|+++|.|+.++++|.+||+|++|||||||+||||+||+|++...++ ..+.++|++|+
T Consensus 419 ~c~ema~~A~~av---~sG~L~i~P~~~~k~w~~W~~~i~DWCiSRQLWWGHrIPAy~v~~~~~-----~~ee~~Wvvar 490 (995)
T KOG0432|consen 419 SCKEMAKKALKAV---ESGKLEILPEFHEKEWYRWLENIRDWCISRQLWWGHRIPAYFVNLSDG-----RAEEDYWVVAR 490 (995)
T ss_pred ehHHHHHHHHHHH---hcCCeEECchHHHHHHHHHHhhccccchhhhhhhccccceeeeecccC-----CCccceeEEeC
Confidence 9999999999999 999999999999999999999999999999999999999999976532 23457999999
Q ss_pred CHHHHHHHHhhhc-CCCCcccccCCCceeeEeccCCcccccccCCCCChhhhhhCCcCcccccccccchHHHHHHHHHHH
Q 001289 601 DEKEALAVANKKF-SGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIK 679 (1107)
Q Consensus 601 ~~~ea~~~~~~~~-~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~~~~d~~~~yP~dl~~tG~Dil~fW~armi~~~~~ 679 (1107)
++++|++++..++ |+..++++||+|||||||||||||||++|||++|+||..|||.++++||||||||||+||+|+|++
T Consensus 491 seeeA~ekaa~k~g~~~~~~L~qDpDVLDTWFSS~L~PfS~lGWP~~t~d~~~fyP~sllETG~DILfFWVaRMvmLg~k 570 (995)
T KOG0432|consen 491 SEEEAREKAAEKFGPGKEFTLEQDPDVLDTWFSSGLWPFSTLGWPEETKDFKNFYPLSLLETGHDILFFWVARMVMLGLK 570 (995)
T ss_pred CHHHHHHHHHHHhCCcccceeecCccHHHhhhhcccccchhcCCccccccHHhcCCchhhhcCchHHHHHHHHHHHhhhh
Confidence 9999999999999 788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEcceeeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCc
Q 001289 680 LGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGT 759 (1107)
Q Consensus 680 l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~Ga 759 (1107)
|+|++||++|++||||||.+|||||||+||||||+|||+|++|++||++|++|||||+|+++|++||+++||||||+||+
T Consensus 571 LtG~lPF~~V~LH~mVRDa~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGt 650 (995)
T KOG0432|consen 571 LTGELPFKEVLLHGLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGT 650 (995)
T ss_pred hcCCCCchheeechhhccccccccchhhccccCHHHHhccccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccCccccccccHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCC-hhhHHHHHHHHHHHHHHH
Q 001289 760 DALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLP-FSCKWILSVLNKAISRTA 838 (1107)
Q Consensus 760 DaLRf~L~~~~~~~~Dinf~~~~v~~~r~f~nKl~N~~rf~l~~l~~~~~p~~~~~~~~~~-~~D~wil~~L~~~~~~v~ 838 (1107)
|||||+||+|+.+++|||+|++++++||+|||||||++||+++.++++|.|.....++..+ ..|+||++||+.+++.++
T Consensus 651 DALRFaL~s~~~~~~dInLDv~rv~g~r~FcNKlWNa~rF~l~~lg~~~~p~~~~~~~~~~~~~d~WIlsrL~~av~~~~ 730 (995)
T KOG0432|consen 651 DALRFALCSYTTQGRDINLDVLRVEGYRHFCNKLWNATRFALQRLGENFVPSPTEDLSGNESLVDEWILSRLAEAVEEVN 730 (995)
T ss_pred HHHHHHHHHccccCccccccHHHHhhHHHHHHHHHHHHHHHHHhcccCCCCCcccccCCCcchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998889887654444333 399999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCC
Q 001289 839 SSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLP 918 (1107)
Q Consensus 839 ~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~ 918 (1107)
++|++|+|+.|++++|+||+++|||+|||.+||.+++++.. .+..|..||+.||+.+|+||||||||+||||||+||
T Consensus 731 ~~~~~~~f~~at~a~~~Fwl~~lCDVYlE~~Kp~l~~~~~~---~~~~a~~vL~~~ld~gLrll~PfMPFvtEel~qrlP 807 (995)
T KOG0432|consen 731 ESLEARNFHLATSALYAFWLYDLCDVYLEATKPLLWGDSEA---LAYEARRVLYRCLDNGLRLLHPFMPFITEELWQRLP 807 (995)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCcHH---HHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHhcc
Confidence 99999999999999999999999999999999999987644 677899999999999999999999999999999999
Q ss_pred CCCCCCCCCcceeccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCC--CcccEEEEecChhHHHHHHHHHH
Q 001289 919 QPKGCATKESIMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQKN--ERLPAIAFCQTKGVSEIIRSHEL 996 (1107)
Q Consensus 919 ~~~~~~~~~SI~~a~~P~~~~~~~d~~~e~~~e~v~~vi~~iRslr~~~~~k~i~--~~~~~~I~~~~~~~~~~l~~~~~ 996 (1107)
++.+ ....||+.++||...+.|.|+++|..|+.+++++..+|++|+.| +++ .+..+++...++....+++.+.+
T Consensus 808 ~r~~-~~~~si~va~yP~~~~~~~~~e~E~~~~~v~~i~~~iRslra~y---~l~~~~~~~v~~~~s~~~~~~~~~~~~~ 883 (995)
T KOG0432|consen 808 RRKG-SKPASISVSPYPSSNELWRNEELESAFELVLAITRAIRSLRAEY---NLSPKPRGSVFIASSDEEDKSILKEFLD 883 (995)
T ss_pred cCCC-CCCCceEecCCCchhcccCCHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCceEEEEecCCCcchhHHHHHHH
Confidence 8875 35679999999988889999999999999999999999999999 884 35667777666655678899999
Q ss_pred HHHhhhccceEEEeccCCCCCCCCceEEeeeCCEEEEEecc--ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccC
Q 001289 997 EIVTLSTSSSLKVLLSGTDEAPTDCAFQNVNENLKVYLKVE--VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKV 1074 (1107)
Q Consensus 997 ~I~~L~~v~~v~i~~~~~~~~p~~~~~~~v~~~~~v~l~l~--iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~Ka 1074 (1107)
.|.++.+++.+.++.. .+..|.||+..++++.+.|||+|+ ||++.|+.||.||+.|+++++++++.++++++|..|+
T Consensus 884 ~i~~l~~~~~v~i~~~-~~~~~~g~~~~~~~~~~~v~l~l~g~vd~~~e~~kl~kkl~klqk~~~~l~~r~~~~~~~~k~ 962 (995)
T KOG0432|consen 884 EISTLTNLELVSISSP-AEEDAQGCALSVASSDCQVYLPLKGLVDPDSEIQKLAKKLEKLQKQLDKLQARISSSDYQEKA 962 (995)
T ss_pred HHHHhhccceeEeccC-CccccCcceEeccCCceEEEEEeccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccC
Confidence 9999999999999987 555679999999999999999999 9999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 001289 1075 PSRIQEDNAAKLAKLLQEIDFFENESNRLGNS 1106 (1107)
Q Consensus 1075 P~~v~e~~~~Kl~~~~~el~~l~~~l~~l~~~ 1106 (1107)
|.++++.+++|++++++||+.+.+++++++.+
T Consensus 963 p~~v~~~~~~Kl~~~~~ei~~~~~~~~~l~~~ 994 (995)
T KOG0432|consen 963 PLEVKEKNKEKLKELEAEIENLKAALANLKSL 994 (995)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 99999999999999999999999999999865
No 2
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.8e-235 Score=2089.22 Aligned_cols=872 Identities=48% Similarity=0.865 Sum_probs=815.6
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCcccCCCCCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCC
Q 001289 143 MAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMD 222 (1107)
Q Consensus 143 ~~~~y~p~~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D 222 (1107)
|++.|||+++|.+||++|+++|+|++..+...++|+|.+|||||||.||||||+++|++|+|+||+||+||+|+|+||||
T Consensus 1 ~~~~ydp~~iE~k~~~~W~~~~~f~~~~~~~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~D 80 (877)
T COG0525 1 LPKTYDPKEIEEKWYKKWEESGYFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTD 80 (877)
T ss_pred CCCCCChhhhhHHHHHHHHhcCCccCCCCCCCCCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCC
Confidence 46789999999999999999999999975442459999999999999999999999999999999999999999999999
Q ss_pred ccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHH
Q 001289 223 HAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRL 302 (1107)
Q Consensus 223 ~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L 302 (1107)
|||||||.+||+++.++ |++++|+|||+|+++||+|++++++.|++||+|||+|+||+|++|||||+++++|+++|++|
T Consensus 81 hAGIaTq~~VEk~l~~~-g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~L 159 (877)
T COG0525 81 HAGIATQVVVEKQLAAE-GITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRL 159 (877)
T ss_pred CCCchHHHHHHHHHHHc-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHH
Confidence 99999999999999765 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCEEEeeeeeeecCCCCcccccccccccccCCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccC
Q 001289 303 YKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGD 382 (1107)
Q Consensus 303 ~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gd 382 (1107)
|++|||||++++|||||.|+|||||+||+|++++ |.|+||+||+++++++|+|||||||||+||
T Consensus 160 y~~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e~~----------------g~L~~i~y~l~~~~~~i~VATTRPEtmlgd 223 (877)
T COG0525 160 YEKGLIYRGERLVNWCPKCRTAISDIEVEYKEVE----------------GKLYYIKYPLADGDGYLVVATTRPETLLGD 223 (877)
T ss_pred HHCCceeecCCcccCCCccccchhhhhhccceee----------------eeEEEEEEecCCCCceEEEEecCccccccc
Confidence 9999999999999999999999999999999988 789999999999999999999999999999
Q ss_pred cEEEEcCCCcccccccCcEEecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCcccc
Q 001289 383 TAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINS 462 (1107)
Q Consensus 383 taiaV~P~d~ry~~l~Gk~~~~P~~~~~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~ 462 (1107)
|||||||+|+||+||+|+++++|++|+.||||+|++ ||++||||+||||||||+|||++|+|||||+++++|+||+|++
T Consensus 224 tAVaVhP~DeRYk~LvGk~v~lPl~~r~IpIiaD~~-VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~ 302 (877)
T COG0525 224 TAVAVHPDDERYKHLVGKEVILPLVGREIPIIADEY-VDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINE 302 (877)
T ss_pred eEEEECCCChhhHhhcCCEEecCCCCCeeeeecCcc-cCCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeecc
Confidence 999999999999999999999999999999999995 9999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCChhhHHHHHHHHHHHcCCeeceeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceE
Q 001289 463 NGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLE 542 (1107)
Q Consensus 463 ~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~ 542 (1107)
+++.+|+||+|++||++|++.|++.|++++.+++.|+||+|+|||+||||++++||||++.++++.+++++ ++|+++
T Consensus 303 ~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~---~~g~i~ 379 (877)
T COG0525 303 EAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAV---KDGKIK 379 (877)
T ss_pred CCccccCCCcHHHHHHHHHHHHHhCCCeEeeeeccccCccccCCCceeeeeecceeeEEhHhhHHHHHHHH---hcCCce
Confidence 88559999999999999999999999999999999999999999999999999999999999999999999 889999
Q ss_pred EeccccHHHHHHHhccCCCeeeeecCCCcccceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCccccc
Q 001289 543 LIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQ 622 (1107)
Q Consensus 543 ~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~ 622 (1107)
|+|++++++|.+||++++|||||||||||||||+|||..| +.+++++++.++... ...|+. ..++|
T Consensus 380 f~P~~~~~~~~~W~~~i~DWcISRQlwwGh~IPvWy~~~~-----------g~v~v~~~~~~~~~~-~~~~~~--~~~~q 445 (877)
T COG0525 380 FVPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKEC-----------GNVVVAEEEPEDPAA-AEKCPK--EELEQ 445 (877)
T ss_pred EecHHHHHHHHHHHhhCcCceeeeeeecCcccceEEecCC-----------CcEEeCCccccchhh-hccCch--hcccC
Confidence 9999999999999999999999999999999999999755 578888886555433 223333 56899
Q ss_pred CCCceeeEeccCCcccccccCCCCChhhhhhCCcCcccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCcc
Q 001289 623 DPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRK 702 (1107)
Q Consensus 623 d~DvlDtWFdSgl~p~s~lgwp~~~~d~~~~yP~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~K 702 (1107)
|+|||||||||+||||+++|||+++.+|++|||+|+++||+||||||++||+|+|+.++|++||++|++||+|||++|+|
T Consensus 446 d~DVLDTWFSS~LwPfstlgWp~~t~~l~~fyPt~llvtG~DIIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G~K 525 (877)
T COG0525 446 DEDVLDTWFSSSLWPFSTLGWPEETPDLKKFYPTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRK 525 (877)
T ss_pred CcchhhhhhhcccccccccCCCCcchHHHhcCCCccccccchhhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHH
Q 001289 703 MSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQR 782 (1107)
Q Consensus 703 MSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~ 782 (1107)
||||+||||||+|+|+ +||||||||||++.+.+|+|++|+.++
T Consensus 526 MSKS~GNvIDP~d~I~-------------------------------------~yGaDAlRf~la~~~~~G~Di~~~~~~ 568 (877)
T COG0525 526 MSKSKGNVIDPLDVID-------------------------------------KYGADALRFTLASLASPGRDINFDEKR 568 (877)
T ss_pred CcccCCCcCCHHHHHH-------------------------------------HhChHHHHHHHHhccCCCcccCcCHHH
Confidence 9999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHh
Q 001289 783 VVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFC 862 (1107)
Q Consensus 783 v~~~r~f~nKl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~ 862 (1107)
++++|||||||||+.||+++++.+ ..+... .....+.+|+||+++|++++..++++|++|+|..|+++||+|+|++||
T Consensus 569 ~~~~rnF~nKlWNa~Rfv~~~~~~-~~~~~~-~~~~~~~~drWIls~l~~~v~~v~~~ld~y~f~~a~~~ly~F~W~~fc 646 (877)
T COG0525 569 VEGYRNFLNKLWNATRFVLMNLDD-LGPDDL-DLLALSLADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFC 646 (877)
T ss_pred HHHHHHHHHHHHhHHHHHHhcccc-cCcccc-cccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHH
Confidence 999999999999999999998743 332211 112347899999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCcceeccCCCCCCCCC
Q 001289 863 DVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWT 942 (1107)
Q Consensus 863 d~Yie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~a~~P~~~~~~~ 942 (1107)
|||||.+|++++++ +. .+.+++.||+++|+.+|+||||||||+||||||+|+.. .|||+++||.+++...
T Consensus 647 D~YlEl~K~~l~~~-~~---~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~~------~si~~~~~P~~~~~~~ 716 (877)
T COG0525 647 DWYLELAKPRLYGG-EE---EKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGT------ESIHLASWPEVDEELI 716 (877)
T ss_pred HHHHHHhhhhhcCc-HH---HHHHHHHHHHHHHHHHHHHhCCCCccchHHHHHhcCCC------CeEEeccCCCcchhhc
Confidence 99999999999987 43 67799999999999999999999999999999999862 6999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccCCC--CcccEEEEecChhHHHHHHHHHHHHHhhhccceEEEeccCCCCCCCC
Q 001289 943 DERAEFEMDLVESTVRCIRSLRAEVLGKQKN--ERLPAIAFCQTKGVSEIIRSHELEIVTLSTSSSLKVLLSGTDEAPTD 1020 (1107)
Q Consensus 943 d~~~e~~~e~v~~vi~~iRslr~~~~~k~i~--~~~~~~I~~~~~~~~~~l~~~~~~I~~L~~v~~v~i~~~~~~~~p~~ 1020 (1107)
|+.++..++.+++++.+||++|+++ |++ .++++.+... .+..+.++.+...|..+++++++++... ....+..
T Consensus 717 d~~a~~~~~~l~~ii~~iR~~r~e~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~i~~~~~-~~~~~~~ 791 (877)
T COG0525 717 DEEAEKEFELLKEIISAIRNLRAEM---NLSPSAPLKVVLVGS-EELEDRLEANEDDIKGLANLEELEILSP-DPEEPPV 791 (877)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHc---CCCCCCceeEEEecc-HhHHHHHHHHHHHHHHhcCcceeeeccc-Cccccch
Confidence 9999999999999999999999999 884 4555555544 5556778999999999999999999865 3333445
Q ss_pred ceEEeeeCCEEEEEecc--ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 001289 1021 CAFQNVNENLKVYLKVE--VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFEN 1098 (1107)
Q Consensus 1021 ~~~~~v~~~~~v~l~l~--iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~ 1098 (1107)
++. .+.....+++++. ||.++|++||+|+++++++++++++++|+|++|+.|||++|++++++|+++++.+++.+++
T Consensus 792 ~~~-~~~~~~~~~~~l~~~id~~~e~~rl~k~~~k~~~e~~~~~~kl~ne~f~~kAp~~vv~~e~~~~~~~~~~~~~l~~ 870 (877)
T COG0525 792 EVT-AVVGGAELFLPLAGLIDLAAELARLEKELEKLEKEIDRIEKKLSNEGFVAKAPEEVVEKEKEKLAEYQVKLAKLEE 870 (877)
T ss_pred hHH-hhhccceEEEeccchhhHHHHHhhHHHHHHHHHHHHHHHHHhhcchhhhhcCCHHHHHHHHHHHHhHHHHHHHHHH
Confidence 555 5566889999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 001289 1099 ESNRLG 1104 (1107)
Q Consensus 1099 ~l~~l~ 1104 (1107)
.++.|+
T Consensus 871 ~l~~l~ 876 (877)
T COG0525 871 RLAVLK 876 (877)
T ss_pred HHHHhc
Confidence 999886
No 3
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=3.2e-231 Score=2171.48 Aligned_cols=1058 Identities=79% Similarity=1.302 Sum_probs=943.2
Q ss_pred CCCCCCCccccccchHhHhhhhhhhccHHHHHHHHHHHHHHHHHH-HHHHhhHhhhcCCCccccccccccccCCCCCCCC
Q 001289 47 LSSIMTEPEKKIETAEDLERKKKKEEKAKEKELKKLKALEKAEQA-KLKAQQKQEQGGNSLKKSVKKNVKRDDGEDNAEE 125 (1107)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (1107)
++++++++++++.+.+++++..+++..++ +||.||....+|++ +|++++++..+.+.+++.+|+..+++...+.+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (1066)
T PLN02381 1 GSRTESEAEKKILTEEELERKKKKEEKAK--EKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRKRDVEDENPED 78 (1066)
T ss_pred CCCcccchhcccCCHHHHHHHHhhhHHHH--HHHHHHHHHHHHHHHHHHHHHhccccCCCcccchhhhhhhhhhhccccc
Confidence 35788999999999999998876555444 44444443334433 2222222111111122222222221222223333
Q ss_pred ccCCCCCcccccccchhhhcCCCchhHHHHHHHHHHhcCCcccCCCCCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHH
Q 001289 126 FVDPETPLGEKKRMSKQMAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTII 205 (1107)
Q Consensus 126 ~~~~~t~~~~k~~~~~~~~~~y~p~~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~ 205 (1107)
...|+|++|+|++|+.+|++.|||+.||.+||++|+++|+|++..+.++++|+|++|||||||.||||||+|++++|+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~yd~~~iE~~w~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~ 158 (1066)
T PLN02381 79 FIDPDTPFGQKKRLSSQMAKQYSPSAVEKSWYAWWEKSGYFGADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTII 158 (1066)
T ss_pred cCCCCCCcchhhccchhcccCCCHHHHHHHHHHHHHHCCCccCCccCCCCcEEEEeCCCCCCCCccHHHHHHHHHHHHHH
Confidence 45899999999999888999999999999999999999999997766678999999999999999999999999999999
Q ss_pred HHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCccc
Q 001289 206 RWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECF 285 (1107)
Q Consensus 206 Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~ 285 (1107)
||+||+||+|+|+|||||||||||.+||++|.++.|++++++||++|+++||+|+++|++.|++||++||+|+||+|+|+
T Consensus 159 Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~ 238 (1066)
T PLN02381 159 RWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECF 238 (1066)
T ss_pred HHHHhCCCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccc
Confidence 99999999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCcccccccccccccCCcceeeecCcccccccceEEEEeeecCCC
Q 001289 286 TMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGG 365 (1107)
Q Consensus 286 T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~ 365 (1107)
||||.|+++|+|+|++||++|||||+.++|||||.|+|+|||+||+|+++.+++++.|||+...++||++++|+|++.++
T Consensus 239 T~d~~~~~~v~~~F~~L~~~GlIyr~~~~VnWcP~~~TaLSd~EVey~d~~~~s~~~~~~~~~~~~~g~~~~~~Y~l~~~ 318 (1066)
T PLN02381 239 TMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWDCTLRTAISDVEVDYIDIKERTLLKVPGYDKPVEFGVLTSFAYPLEGG 318 (1066)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEeccccccCCCCCCCCccHHHhhhhccccchhhcccCCCcceeeEEEEEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cceEEEeeccccccccCcEEEEcCCCcccccccCcEEecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHH
Q 001289 366 LGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKR 445 (1107)
Q Consensus 366 ~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~P~~~~~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~ 445 (1107)
+++|+|||||||||+|++||||||+|+||++|+|++|.|||+++.+|||+|+.+||++||||+||+|||||++||++|++
T Consensus 319 ~~~i~vATtRpEti~g~~avaV~P~d~ry~~L~G~~~~~Pl~~~~ipIi~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~ 398 (1066)
T PLN02381 319 LGEIVVATTRIETMLGDTAIAIHPDDERYKHLHGKFAVHPFNGRKLPIICDAILVDPNFGTGAVKITPAHDPNDFEVGKR 398 (1066)
T ss_pred CCEEEEecCCHHHHhcccceeeCCCCcchhhhCCCEEECCCCCCEEEEEECCccccccCCCCcEEecCCCChHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999864699999999999999999999999999
Q ss_pred hCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCeeceeccccccceeccCCCeeEecccccccccccHH
Q 001289 446 HNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSM 525 (1107)
Q Consensus 446 ~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~ 525 (1107)
|||+++++||++|+|++++|++|.||++++||++|++.|++.|++++.+++.|+||+|||||+||||++++||||+|+++
T Consensus 399 ~~L~~i~~id~~G~~~~~~~~~~~Gl~~~eAr~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~~~l 478 (1066)
T PLN02381 399 HNLEFINIFTDDGKINSNGGSEFAGMPRFAAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCSSM 478 (1066)
T ss_pred cCCCeeeeeCCCceeCCCCccccCCCCHHHHHHHHHHHHHhCCCEecceeeecCCCeeCCCCceEEEeecccceEEchHH
Confidence 99999999999999999876589999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeecCCCcccceeEEEccCcchhhccCCCCCceEEecCHHHH
Q 001289 526 AMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEA 605 (1107)
Q Consensus 526 ~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea 605 (1107)
+++|++++.++++++|+|+|++++++|.+||+|++|||||||||||||||+|||..+++.....+.+++.|++++++.++
T Consensus 479 ~~~al~av~~~~~~~i~~~P~~~~~~~~~wl~n~~DWcISRQr~WG~pIPiw~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 558 (1066)
T PLN02381 479 AKQALDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRIPAWYVTLEDDQLKELGSYNDHWVVARNESDA 558 (1066)
T ss_pred HHHHHHHHhhccCCceEEEChHHHHHHHHHHhcCccceeeeecccCCccceEEeccChhhcccCCcccceEEEccchHhh
Confidence 99999998444568999999999999999999999999999999999999999975433222334455789999988887
Q ss_pred HHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCCChhhhhhCCcCcccccccccchHHHHHHHHHHHhcCCCC
Q 001289 606 LAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVP 685 (1107)
Q Consensus 606 ~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~~~~d~~~~yP~dl~~tG~Dil~fW~armi~~~~~l~g~~P 685 (1107)
...++..|++....++|++||||||||||+||++++|||+++++|++|||+|+++||+||+||||+||+|+|+.++|++|
T Consensus 559 ~~~~~~~~~~~~~~~~rd~DVlDtWF~Sg~~p~~~lg~P~~~~~~~~~~P~d~~~~G~Dii~~W~~rmi~~~~~~~~~~P 638 (1066)
T PLN02381 559 LLEASQKFPGKKFELSQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMMGMQLGGDVP 638 (1066)
T ss_pred cchhhcccCCCccceeecCceeeEEEeCCchHHHHhcCCCCHHHHhccCCCeeeeecchhhhhHHHHHHHHHHHhCCCCc
Confidence 77666667665557999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEcceeeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHH
Q 001289 686 FTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFA 765 (1107)
Q Consensus 686 Fk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~ 765 (1107)
|++|++||||+|.+|+|||||+||||||.++|+|++|++|+.+|..|||+++|+++|.++|+++||+|||+|||||||||
T Consensus 639 Fk~v~~hG~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~ 718 (1066)
T PLN02381 639 FRKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKDFPNGIAECGTDALRFA 718 (1066)
T ss_pred hHHheecceEECCCCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhccccchhhhhhHhhhccccCCCCccccChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCccccccccHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCC
Q 001289 766 LVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYE 845 (1107)
Q Consensus 766 L~~~~~~~~Dinf~~~~v~~~r~f~nKl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~ 845 (1107)
|++++..++|++|+++++.++|+|||||||++||+++++.++|.|........++.+|+||+++|+.+++.++++|++|+
T Consensus 719 l~~~~~~~~di~~~~~~v~~~r~f~nKlwNa~rf~~~~~~~~~~~~~~~~~~~~~~~DrWILskL~~~i~~v~~~~e~y~ 798 (1066)
T PLN02381 719 LVSYTAQSDKINLDILRVVGYRQWCNKLWNAVRFAMSKLGDDYTPPATLSVETMPFSCKWILSVLNKAISKTVSSLDAYE 798 (1066)
T ss_pred HHcCCccccccCccHHHHHHHHHHHHHHHHHHHHHHhhcccccCcccccCccccCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999988765565432222234567999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCC
Q 001289 846 FSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCAT 925 (1107)
Q Consensus 846 f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~ 925 (1107)
|+.|++++|+|+|++|||+||+.+|+++++++......+++++.+|++||+.+++||||||||+|||||+.|+...+...
T Consensus 799 F~~A~~~l~~F~~~dl~d~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~vL~~llrLL~PfmPfitEELw~~L~~~~~~~~ 878 (1066)
T PLN02381 799 FSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPEFASERAAAQDTLWICLDTGLRLLHPFMPFVTEELWQRLPQPKDHTR 878 (1066)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhHHHHccCCccccHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhccCCC
Confidence 99999999999999999999999999987653210115668899999999999999999999999999999975321112
Q ss_pred CCcceeccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccEEEEecChhHHHHHHHHHHHHHhhhccc
Q 001289 926 KESIMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQKNERLPAIAFCQTKGVSEIIRSHELEIVTLSTSS 1005 (1107)
Q Consensus 926 ~~SI~~a~~P~~~~~~~d~~~e~~~e~v~~vi~~iRslr~~~~~k~i~~~~~~~I~~~~~~~~~~l~~~~~~I~~L~~v~ 1005 (1107)
.+||++++||.+++.|.|++++..|+.++++++.||++|+++.+-..+.++++++.+.+....+.++.+...|++|++++
T Consensus 879 ~~SI~~~~~P~~~~~~~d~~le~~~~~l~~ii~~iR~lR~~~~~i~~k~~~~~~~~~~~~~~~~~l~~~~~~i~~l~~~~ 958 (1066)
T PLN02381 879 KDSIMISEYPSAVEAWTNEKVEYEMDLVLSTVKCLRSLRAEVLEKQKNERLPAFALCRNQEIAAIIKSHQLEILTLANLS 958 (1066)
T ss_pred CCeeEeCCCCCCCchhCCHHHHHHHHHHHHHHHHHHHHHHHccccccCcCCcEEEEcCCHHHHHHHHHHHHHHHHhhCCC
Confidence 36999999999998899999999999999999999999999811112566777777766667788999999999999999
Q ss_pred eEEEeccCCCCCCCCceEEeeeCCEEEEEecc--ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHH
Q 001289 1006 SLKVLLSGTDEAPTDCAFQNVNENLKVYLKVE--VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNA 1083 (1107)
Q Consensus 1006 ~v~i~~~~~~~~p~~~~~~~v~~~~~v~l~l~--iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~ 1083 (1107)
+|+++.......|.+|+..+++.++++|+++. ||+++|++||+|+++++++++++++++|+|++|++|||++|+++++
T Consensus 959 ~v~~~~~~~~~~~~~~~~~~v~~~~~~~l~l~~~iD~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~~vve~e~ 1038 (1066)
T PLN02381 959 SLKVLLSENDAPPAGCAFENVNENLKVYLQAQGAVNAEAELEKLRNKMDEIQKQQEKLEKKMNASGYKEKVPANIQEEDA 1038 (1066)
T ss_pred eeeeeccccccCcccceeeEecCceEEEEECCcccCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhcCCHHHHHHHH
Confidence 99986321234588998777888999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC
Q 001289 1084 AKLAKLLQEIDFFENESNRLGNS 1106 (1107)
Q Consensus 1084 ~Kl~~~~~el~~l~~~l~~l~~~ 1106 (1107)
+||++++++++.+++.|+.|+++
T Consensus 1039 ~kl~~~~~~l~~l~~~l~~l~~~ 1061 (1066)
T PLN02381 1039 RKLTKLLQELEFFEKESKRLEAE 1061 (1066)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999863
No 4
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=1.2e-214 Score=2030.94 Aligned_cols=956 Identities=56% Similarity=0.959 Sum_probs=883.0
Q ss_pred ccccchhhhcCCCchhHHHHHHHHHHhcCCcccCC----CCCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhc
Q 001289 136 KKRMSKQMAKEYNPSSVEKSWYSWWENSGYFIADN----KSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMS 211 (1107)
Q Consensus 136 k~~~~~~~~~~y~p~~vE~~w~~~W~~~~~f~~~~----~~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~ 211 (1107)
||+++.+|++.|||+.+|++||++|+++++|++.. +.++++|+|++|||||||.||||||+|++++|+++||+||+
T Consensus 17 ~~~~~~~~~~~yd~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~ 96 (995)
T PTZ00419 17 KKRNISSMAASYDPKEVESGWYEWWEKSGFFKPAEDAKSLNSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMK 96 (995)
T ss_pred hhhchhhcCCCCCHHHHHHHHHHHHHHCCCcccCccccccCCCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 44677889999999999999999999999999862 34578999999999999999999999999999999999999
Q ss_pred CCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhh
Q 001289 212 GYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKR 291 (1107)
Q Consensus 212 G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~ 291 (1107)
||+|+|+|||||||||||.+||+++.++.|++++++||++|+++||+|++++++.|++||++||+|+||+|+|+||||.|
T Consensus 97 G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~ 176 (995)
T PTZ00419 97 GDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQR 176 (995)
T ss_pred CCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHH
Confidence 99999999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCEEEeeeeeeecCCCCcccccccccccccCCcceeeecCcccccccceEEEEeeecCCCcc-eEE
Q 001289 292 SKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLG-EIV 370 (1107)
Q Consensus 292 ~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~-~i~ 370 (1107)
+++|+++|++||++|||||+.++|||||.|+|+|||+||+|++..+++++++|+|+..+++|.|++|+|++.++++ +|+
T Consensus 177 ~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EVe~~~~~~~~~~~~~~~~~~~~~g~l~~i~f~l~~~~~~~l~ 256 (995)
T PTZ00419 177 SKAVKEAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVEFEEIEKPTKITIPGYDKKVEVGVLWHFAYPLEDSGQEEIV 256 (995)
T ss_pred HHHHHHHHHHHHHCCCEEecceeeecCCCCCCCCchhhcccccccccceeeccccccccccceeEEEEEeecCCCCcEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987665 999
Q ss_pred EeeccccccccCcEEEEcCCCcccccccCcEEecCC-CCCccceEecC-ccccCCCCCCceecCCCCCcchHHHHHHhCC
Q 001289 371 VATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPF-NGRKIPIICDA-ILVDPKFGTGAVKITPAHDPNDFDVGKRHNL 448 (1107)
Q Consensus 371 vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~P~-~~~~iPIi~d~-~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L 448 (1107)
|||||||||+||+||||||+|+||++|+|++|.||+ +++.+|||+|+ + |+++||||+||+|||||++||++|++|||
T Consensus 257 vaTTrPeTl~g~~avav~P~d~~y~~l~G~~~~~Pl~~~~~ipii~~~~~-V~~~~GTG~V~~~Pahd~~D~~~~~~~~L 335 (995)
T PTZ00419 257 VATTRIETMLGDVAVAVHPKDERYKKLHGKELIHPFIPDRKIPIIADDEL-VDMEFGTGAVKITPAHDPNDYEIAKRHNL 335 (995)
T ss_pred EEeCCcchhhhCeEEEECCCCcHHHHhcCCEEECCccCCCEEEEEeCCcc-cCCCcCCCCeEeCCCCChHHHHHHHHcCC
Confidence 999999999999999999999999999999999999 89999999999 7 99999999999999999999999999999
Q ss_pred ccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCeeceeccccccceeccCCCeeEecccccccccccHHHHH
Q 001289 449 EFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAME 528 (1107)
Q Consensus 449 ~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~ 528 (1107)
+++++||++|+|++++| +|.|+++++||++|++.|+++|++++.+++.|++|+|||||++||+++++||||+|++++++
T Consensus 336 ~~~~~i~~~G~~~~~~~-~~~Gl~~~~ar~~ii~~L~~~g~l~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~ 414 (995)
T PTZ00419 336 PFINIFTLDGKINENGG-EFAGMHRFDCRRKIEEELKEMGLLRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKR 414 (995)
T ss_pred CeeeeeCCCceEcCCCc-ccCCCCHHHHHHHHHHHHHhcCCEEeeEEeecCCCEeCCCCCEEEEEecCeeeEecHHHHHH
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeecCCCcccceeEEEccCcchhhccCCCCCceEEecCHHHHHHH
Q 001289 529 ALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAV 608 (1107)
Q Consensus 529 a~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~ 608 (1107)
+++++ ++++++|+|+.++++|.+||+|++|||||||||||||||+|||..|++. ....+++.|+++.+.+++...
T Consensus 415 al~~v---~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 489 (995)
T PTZ00419 415 AVEAV---RNGELKIIPSSHENVWYHWLENIQDWCISRQLWWGHRIPAYRVISKGPE--TDPSDEEPWVVARSEEEALEK 489 (995)
T ss_pred HHHHh---hcCCeEEEChHHHHHHHHHHhccccceeeeecccCceeeEEEeCCCCcc--ccCCCCceEEEcCCHHHHHhh
Confidence 99999 8899999999999999999999999999999999999999999877521 111234589999888887765
Q ss_pred Hhhhc--CCCCcccccCCCceeeEeccCCcccccccCCCCChhhhhhCCcCcccccccccchHHHHHHHHHHHhcCCCCc
Q 001289 609 ANKKF--SGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPF 686 (1107)
Q Consensus 609 ~~~~~--~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~~~~d~~~~yP~dl~~tG~Dil~fW~armi~~~~~l~g~~PF 686 (1107)
+...+ +.++..++|++||||||||||+||++++|||+++.+|++|||+|++++|+||+||||+||+|+|+.++|++||
T Consensus 490 ~~~~~~~~~~~~~~~~~~DVlDtWFdS~l~p~~~~g~p~~~~~~~~~~P~d~~~~G~Dii~~W~arm~~~~~~~~~~~Pf 569 (995)
T PTZ00419 490 AKKKFGLSEEDFELEQDEDVLDTWFSSGLFPFSTLGWPDQTDDLQRFFPTSLLETGSDILFFWVARMVMMSLHLTDKLPF 569 (995)
T ss_pred hccccCCccccCCeEECCceEEEEEeCCHHHHHHhCCCCChHHHhhcCCCcEEEechhHHhHHHHHHHHHHHHhcCCCCh
Confidence 54333 2234579999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cEEEEcceeeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHH
Q 001289 687 TKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFAL 766 (1107)
Q Consensus 687 k~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L 766 (1107)
++|++||||+|.+|+|||||+||||||.++|+|++|++|+.++..||++++|+++|.++|+++||+|||+||||||||||
T Consensus 570 k~v~~HG~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l 649 (995)
T PTZ00419 570 KTVFLHAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPECGTDALRFGL 649 (995)
T ss_pred HHHhccceEECCCCCCcccCCCCcCChHHHhcccchhhHHHhhhccccchhhhhhHhhhhhccCCCCCcccCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCccccccccHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCC-C----CCCCCChhhHHHHHHHHHHHHHHHHHH
Q 001289 767 VSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLK-L----HPHNLPFSCKWILSVLNKAISRTASSL 841 (1107)
Q Consensus 767 ~~~~~~~~Dinf~~~~v~~~r~f~nKl~N~~rf~l~~l~~~~~p~~~-~----~~~~~~~~D~wil~~L~~~~~~v~~a~ 841 (1107)
+++++.++|++|+++++.++++|||||||++||+++++.+...+... . ....++..|+||+++|+.+++.++++|
T Consensus 650 ~~~~~~~~Di~~~~~~v~~~~~f~nklwN~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~wIls~L~~~i~~v~~~~ 729 (995)
T PTZ00419 650 LAYTQQGRNINLDINRVVGYRHFCNKLWNAVKFALMKLLKDFNLPNSTLFKPNNVESLPWEDKWILHRLNVAIKEVTEGF 729 (995)
T ss_pred HhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887542211110 0 012456789999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHHhHhHHHHHhhcccccC-CCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCC
Q 001289 842 NSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAG-DNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQP 920 (1107)
Q Consensus 842 e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~-~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~ 920 (1107)
++|+|+.|++++|+|+|+++||+|||.+|+|+.. .+.. .+++++.+|+.+|+.+++||||||||+|||||++|+..
T Consensus 730 e~y~f~~A~~~i~~F~~~~~~n~Yie~~K~~l~~~~~~~---~~~~~~~~L~~vL~~~l~LL~PfmPfitEElw~~L~~~ 806 (995)
T PTZ00419 730 KEYDFSEATQATYNFWLYELCDVYLELIKPRLSKQSDGE---RKQHAQDVLHTVLDIGLRLLHPMMPFITEELYQRLPNY 806 (995)
T ss_pred HccCHHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcH---HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcc
Confidence 9999999999999999999999999999999842 2222 46778999999999999999999999999999999752
Q ss_pred CCCCCCCcceeccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCC--CcccEEEEecChhHHHHHHHHHHHH
Q 001289 921 KGCATKESIMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQKN--ERLPAIAFCQTKGVSEIIRSHELEI 998 (1107)
Q Consensus 921 ~~~~~~~SI~~a~~P~~~~~~~d~~~e~~~e~v~~vi~~iRslr~~~~~k~i~--~~~~~~I~~~~~~~~~~l~~~~~~I 998 (1107)
. ...+||++++||.+++.|.|++++..|+.++++++.||++|+++ +|+ .++.++|.+.+++..+.++.+...|
T Consensus 807 ~--~~~~si~~~~~P~~~~~~~d~~~e~~~~~~~~ii~~iR~~r~~~---~i~~~~~l~~~i~~~~~~~~~~~~~~~~~i 881 (995)
T PTZ00419 807 L--RKSESISIAKYPQPNPGWNNEALDEEMKIIMSIVKSIRSLIATL---GIPNKTKPDCYVTAKDAELIELIESAENLI 881 (995)
T ss_pred C--CCCCeeeccCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHc---CCCCCCceeEEEEeCCHHHHHHHHHHHHHH
Confidence 1 12369999999999888899999999999999999999999999 884 4455566666666678899999999
Q ss_pred HhhhccceEEEeccC--CCCCCCCceEEeeeCCEEEEEecc--ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccC
Q 001289 999 VTLSTSSSLKVLLSG--TDEAPTDCAFQNVNENLKVYLKVE--VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKV 1074 (1107)
Q Consensus 999 ~~L~~v~~v~i~~~~--~~~~p~~~~~~~v~~~~~v~l~l~--iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~Ka 1074 (1107)
+.|+++++|+++.+. ....|.+|+..++..++++++++. ||+++|++||+|+++++++++++++++|+|++|++||
T Consensus 882 ~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~l~~~id~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kA 961 (995)
T PTZ00419 882 STLAKIGSVSVIPPIEEEAEVPKGCGFDVVDNKVIIYLNLDEFIDLKKELAKLEKKLAKLQKSLESYLKKISIPNYEDKV 961 (995)
T ss_pred HHhcCCCeeEEeccccccccCcccceeeEecCceEEEEECCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcC
Confidence 999999999987220 223577887777777899999998 9999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 001289 1075 PSRIQEDNAAKLAKLLQEIDFFENESNRLGNS 1106 (1107)
Q Consensus 1075 P~~v~e~~~~Kl~~~~~el~~l~~~l~~l~~~ 1106 (1107)
|++|++++++||++++++++.++++|+.|+++
T Consensus 962 p~~vve~e~~kl~~~~~~l~~l~~~l~~l~~~ 993 (995)
T PTZ00419 962 PEDVRKLNDEKIDELNEEIKQLEQAIEELKSL 993 (995)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999864
No 5
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2e-201 Score=1889.86 Aligned_cols=866 Identities=49% Similarity=0.875 Sum_probs=802.2
Q ss_pred hhhcCCCchhHHHHHHHHHHhcCCcccCCCCCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCC
Q 001289 142 QMAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 221 (1107)
Q Consensus 142 ~~~~~y~p~~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~ 221 (1107)
+|++.|||+.||++||++|+++|+|+++.+ .+++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|||
T Consensus 4 ~~~~~y~~~~~E~~~~~~W~~~~~f~~~~~-~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~ 82 (874)
T PRK05729 4 ELPKTYDPKEVEAKWYQKWEEKGYFKPDDN-SKKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGT 82 (874)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCCCcccCcC-CCCCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCC
Confidence 478899999999999999999999999764 3456999999999999999999999999999999999999999999999
Q ss_pred CccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHH
Q 001289 222 DHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVR 301 (1107)
Q Consensus 222 D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~ 301 (1107)
||||||||.+||+++.+ +|++++++|||+|+++||+|++++++.|++||++||+|+||+|+||||||.|+++|+++|++
T Consensus 83 D~~Gi~~e~~ve~~l~~-~g~~~~~~~re~f~~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~ 161 (874)
T PRK05729 83 DHAGIATQMVVERQLAA-EGKSRHDLGREKFLEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVR 161 (874)
T ss_pred CccchhhHHHHHHHHHh-cCCChHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHH
Confidence 99999999999998854 59999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEeeeeeeecCCCCcccccccccccccCCcceeeecCcccccccceEEEEeeecCCCcceEEEeecccccccc
Q 001289 302 LYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLG 381 (1107)
Q Consensus 302 L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~g 381 (1107)
||++|||||+.++|||||.|+|+|||+||+|++.. |.+++++||+.+++++|+|||||||||+|
T Consensus 162 L~~~GlIyr~~~~v~wcp~~~talsd~EV~~~~~~----------------~~~~~i~f~~~~~~~~l~vaTtrPeTl~~ 225 (874)
T PRK05729 162 LYEKGLIYRGKRLVNWDPKLQTALSDLEVEYKEVK----------------GKLWHIRYPLADGSDYLVVATTRPETMLG 225 (874)
T ss_pred HHHCCCEeecCcccccCCCCCCcchhhhccccccc----------------ceEEEEEEEecCCCcEEEEEeCCcchhhc
Confidence 99999999999999999999999999999998866 57899999999888999999999999999
Q ss_pred CcEEEEcCCCcccccccCcEEecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccc
Q 001289 382 DTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKIN 461 (1107)
Q Consensus 382 dtaiaV~P~d~ry~~l~Gk~~~~P~~~~~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~ 461 (1107)
|+||||||+|+||++|+|++++||++++.+|||+|++ ||++||||+||+|||||++||++|++|||+++++||++|+|+
T Consensus 226 ~~avaV~P~d~ry~~l~g~~~~~P~~~~~ipii~~~~-V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~ 304 (874)
T PRK05729 226 DTAVAVNPEDERYKHLIGKTVILPLVGREIPIIADEY-VDPEFGTGAVKITPAHDPNDFEVGKRHNLPMINIMDEDGTIN 304 (874)
T ss_pred CeeEeECCCccHHHHhcCCEEECCCCCCeeeEecCcc-CCCCCCCcceEecCCCCHHHHHHHHHcCCCcccccCCCCeEc
Confidence 9999999999999999999999999999999999995 999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCChhhHHHHHHHHHHHcCCeeceeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCce
Q 001289 462 SNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKL 541 (1107)
Q Consensus 462 ~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i 541 (1107)
+++| +|+||+|++||++|++.|++.|++++.+++.|++|+|||||++||+++++||||+|+++++++++++ +++++
T Consensus 305 ~~~~-~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~~~~i~~~~~~QWFi~~~~~~~~~~~~v---~~~~i 380 (874)
T PRK05729 305 ENPG-EYQGLDRFEARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPALEAV---ENGEI 380 (874)
T ss_pred CCCc-ccCCCCHHHHHHHHHHHHHhCCCeeeeEEeeccCCeeCCCCceEEEEecCcceEehHHHHHHHHHHH---hcCCc
Confidence 9999 9999999999999999999999999999999999999999999999999999999999999999999 88899
Q ss_pred EEeccccHHHHHHHhccCCCeeeeecCCCcccceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccc
Q 001289 542 ELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMC 621 (1107)
Q Consensus 542 ~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~ 621 (1107)
+|+|+.+++++.+||+|++|||||||||||||||+|+|.. +.+.++.+..++ ++ +..++
T Consensus 381 ~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~------------~~~~v~~~~~~~-------~~--~~~~~ 439 (874)
T PRK05729 381 KFVPERWEKTYFHWMENIQDWCISRQLWWGHRIPAWYDED------------GEVYVGREEPEA-------RE--KALLT 439 (874)
T ss_pred EEEChHHHHHHHHHHhcCccceeeeecccCCcccEEEeCC------------CcEEeCCccccc-------cc--ccCeE
Confidence 9999999999999999999999999999999999999853 234454443211 11 12489
Q ss_pred cCCCceeeEeccCCcccccccCCCCChhhhhhCCcCcccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCc
Q 001289 622 QDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGR 701 (1107)
Q Consensus 622 ~d~DvlDtWFdSgl~p~s~lgwp~~~~d~~~~yP~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~ 701 (1107)
||+||||||||||+||++++|||+++.+|++|||+|++++|+||+|||++||+|+|+.++|++||++|++||+|+|.+|+
T Consensus 440 ~~~DvlDtWfsS~l~~~~~lgwp~~~~~~~~~~P~d~~~~G~Dii~~W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~ 519 (874)
T PRK05729 440 QDEDVLDTWFSSALWPFSTLGWPEKTEDLKRFYPTSVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYIHGLVRDEQGR 519 (874)
T ss_pred eCCceecceecCCccHHHHhCCCCCcHHHHhcCCcccccccccccchHHHHHHHHHHHhcCCCchhheEEeeeEECCCCC
Confidence 99999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHH
Q 001289 702 KMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQ 781 (1107)
Q Consensus 702 KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~ 781 (1107)
|||||+||||||.|+|+ +||+|||||||++.++.++|++|+.+
T Consensus 520 KMSKSlGNvIdP~dvi~-------------------------------------~yGaDalR~~ll~~~~~~~Di~fs~~ 562 (874)
T PRK05729 520 KMSKSKGNVIDPLDLID-------------------------------------KYGADALRFTLAALASPGRDIRFDEE 562 (874)
T ss_pred CcccCCCCCCCHHHHHH-------------------------------------HhChHHHHHHHHhCCCCCCCceeCHH
Confidence 99999999999999999 89999999999999899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhH
Q 001289 782 RVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQF 861 (1107)
Q Consensus 782 ~v~~~r~f~nKl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l 861 (1107)
.+.++++|+|||||++||+++++.+ +.+........++..|+||+++|+.+++.++++|++|+|+.|++.+|+|+|+++
T Consensus 563 ~l~~~~~~~nkl~N~~Rf~~~~~~~-~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~~ 641 (874)
T PRK05729 563 RVEGYRNFANKLWNASRFVLMNLEG-ADVGELPDPEELSLADRWILSRLNRTVAEVTEALDKYRFDEAARALYEFIWNEF 641 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-CCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999877643 221111111245688999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCcceeccCCCCCCCC
Q 001289 862 CDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGW 941 (1107)
Q Consensus 862 ~d~Yie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~a~~P~~~~~~ 941 (1107)
||+|||.+|||++ + . .++.++.+|+.+++.+++||||||||+||||||+|+... ..+||+.++||++++.+
T Consensus 642 ~~~Yle~~k~~l~-~--~---~~~~~~~~l~~~l~~~~~lL~Pf~PfitEelw~~l~~~~---~~~si~~~~~P~~~~~~ 712 (874)
T PRK05729 642 CDWYLELAKPVLQ-E--A---AKRATRATLAYVLEQILRLLHPFMPFITEELWQKLAPLG---IEESIMLAPWPEADEAI 712 (874)
T ss_pred HHHHHHHHHHHhh-h--h---HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhcccCC---CCCceeecCCCCCCccc
Confidence 9999999999987 2 1 356789999999999999999999999999999998531 13589999999998888
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--cccEEEEecChhHHHHHHHHHHHHHhhhccceEEEeccCCCCCCC
Q 001289 942 TDERAEFEMDLVESTVRCIRSLRAEVLGKQKNE--RLPAIAFCQTKGVSEIIRSHELEIVTLSTSSSLKVLLSGTDEAPT 1019 (1107)
Q Consensus 942 ~d~~~e~~~e~v~~vi~~iRslr~~~~~k~i~~--~~~~~I~~~~~~~~~~l~~~~~~I~~L~~v~~v~i~~~~~~~~p~ 1019 (1107)
|+.++..++.++++++.||++|+++ +|+. ++.+++.+.+....+.++.+.+.|+.|+++++|+++.. .+..|.
T Consensus 713 -~~~~~~~~~~~~~ii~~ir~~r~~~---~i~~~~~~~~~i~~~~~~~~~~l~~~~~~i~~l~~~~~v~~~~~-~~~~~~ 787 (874)
T PRK05729 713 -DEAAEAEFEWLKELITAIRNIRAEM---NIPPSKKLPLLLKGADAEDRARLEANEAYIKRLARLESLEILAD-DEEAPE 787 (874)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCeeeEEEEeCCHHHHHHHHHHHHHHHHHhCcCceEEecC-CCcCCc
Confidence 8899999999999999999999999 8844 44555655565666788999999999999999999765 344688
Q ss_pred CceEEeeeCCEEEEEecc--ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHH
Q 001289 1020 DCAFQNVNENLKVYLKVE--VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFE 1097 (1107)
Q Consensus 1020 ~~~~~~v~~~~~v~l~l~--iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~ 1097 (1107)
||+. ++.+++++||++. ||+++|++||+|+++++++++++++++|+|++|++|||++|++++++||++++++++.++
T Consensus 788 ~~~~-~v~~~~~i~l~l~~~id~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l~ 866 (874)
T PRK05729 788 GAAS-AVVGGAELFLPLEGLIDVEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLK 866 (874)
T ss_pred CceE-EEecCeEEEEECCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877 5667899999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 001289 1098 NESNRLG 1104 (1107)
Q Consensus 1098 ~~l~~l~ 1104 (1107)
++|+.|+
T Consensus 867 ~~l~~l~ 873 (874)
T PRK05729 867 ERLARLK 873 (874)
T ss_pred HHHHHhc
Confidence 9999886
No 6
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=2.8e-197 Score=1852.95 Aligned_cols=875 Identities=44% Similarity=0.785 Sum_probs=797.8
Q ss_pred hhhcCCCchhHHHHHHHHHHhcCCcccCCCCCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCC
Q 001289 142 QMAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 221 (1107)
Q Consensus 142 ~~~~~y~p~~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~ 221 (1107)
+|++.|||+. |++||++|+++|+|++..+..+++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|||
T Consensus 56 ~~~~~y~~~~-E~~~~~~W~~~~~f~~~~~~~~~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~ 134 (958)
T PLN02943 56 ETAKSFDFTS-EERIYNWWESQGYFKPNFDRGGDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGT 134 (958)
T ss_pred ccCCCCChhh-hHHHHHHHHHCCCcccCcccCCCCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCC
Confidence 3678899999 999999999999999987656778999999999999999999999999999999999999999999999
Q ss_pred CccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHH
Q 001289 222 DHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVR 301 (1107)
Q Consensus 222 D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~ 301 (1107)
||||||||.+||+++ +.+|++++++||++|+++||+|++++++.|++||++||+|+||+|+|+||||.|+++|+++|++
T Consensus 135 D~~Gl~~e~~vek~l-~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~ 213 (958)
T PLN02943 135 DHAGIATQLVVEKML-ASEGIKRTDLGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVR 213 (958)
T ss_pred CcccchhHHHHHHHH-HHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHH
Confidence 999999999999988 5679999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEeeeeeeecCCCCcccccccccccccCCcceeeecCcccccccceEEEEeeecCCCc-ceEEEeeccccccc
Q 001289 302 LYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGL-GEIVVATTRVETML 380 (1107)
Q Consensus 302 L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~-~~i~vaTTrPeT~~ 380 (1107)
||++|||||+.++|||||.|+|+|||+||+|++.. |.+++++|++.+++ .+|+|||||||||+
T Consensus 214 l~~~Gliyr~~~~V~wcp~~~Tals~~Evey~e~~----------------~~~~~i~f~l~~~~~~~l~vaTTrPeTl~ 277 (958)
T PLN02943 214 LHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP----------------GTLYYIKYRVAGGSEDFLTIATTRPETLF 277 (958)
T ss_pred HHHCCCEEecCceeccCCCCCCCcCHHHhhccccc----------------ccEEEEEEEEcCCCCCEEEEEeCChhhhh
Confidence 99999999999999999999999999999998765 56789999997654 68999999999999
Q ss_pred cCcEEEEcCCCcccccccCcEEecCCC-CCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCc
Q 001289 381 GDTAIAIHPEDARYSHLHGKFAIHPFN-GRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGK 459 (1107)
Q Consensus 381 gdtaiaV~P~d~ry~~l~Gk~~~~P~~-~~~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~ 459 (1107)
||+||||||+|+||++|+|++++||++ ++.+|||+|++ ||++||||+||+|||||++||++|++|||+++++||++|+
T Consensus 278 ~~~avavnP~d~ry~~l~g~~~~~Pl~~~~~ipii~~~~-V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~ 356 (958)
T PLN02943 278 GDVAIAVNPEDDRYSKYIGKMAIVPMTYGRHVPIIADRY-VDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGT 356 (958)
T ss_pred cceEEEECCCCHHHHHHcCCEEECCCcCCCeeeEEecCc-ccCCCCCceEEeCCCCChHHHHHHHHcCCCceeeeCCCce
Confidence 999999999999999999999999996 99999999995 9999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCChhhHHHHHHHHHHHcCCeeceeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCC
Q 001289 460 INSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKK 539 (1107)
Q Consensus 460 ~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~ 539 (1107)
|++++| .| |++||++|++.|+++|++++.+++.|++|+|||||++|||++++||||+|+++++++++++ +++
T Consensus 357 ~~~~~g-~~----~~ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~Ie~~~~~QWFi~~~~l~~~~l~~v---~~~ 428 (958)
T PLN02943 357 LNEVAG-LY----WFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALKAV---ENG 428 (958)
T ss_pred eeccCC-cc----HHHHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcEeEEEeccceeEEHHHHHHHHHHHH---hcC
Confidence 997766 44 9999999999999999999999999999999999999999999999999999999999999 888
Q ss_pred ceEEeccccHHHHHHHhccCCCeeeeecCCCcccceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcc
Q 001289 540 KLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFE 619 (1107)
Q Consensus 540 ~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~ 619 (1107)
+++|+|+.+++++.+||+|++|||||||||||||||+|||...+ ....|+++++.+++...+..+|+. ...
T Consensus 429 ~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~w~~~~~~--------~~~~~~v~~~~~~~~~~~~~~~g~-~~~ 499 (958)
T PLN02943 429 ELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKD--------CEEDYIVARSAEEALEKAREKYGK-DVE 499 (958)
T ss_pred CcEEEChHHHHHHHHHHhcCccceEEEecCCCCccCceeccccC--------CCceEEecCcHHHHHHHhhhhcCC-chh
Confidence 99999999999999999999999999999999999999984110 013689999999888777666643 346
Q ss_pred cccCCCceeeEeccCCcccccccCCCC-ChhhhhhCCcCcccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCC
Q 001289 620 MCQDPDVLDTWFSSGLFPLSVLGWPDD-TDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDA 698 (1107)
Q Consensus 620 l~~d~DvlDtWFdSgl~p~s~lgwp~~-~~d~~~~yP~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~ 698 (1107)
++|++||||||||||+||++++|||+. +++|++|||+|++++|+||+|||++||+|+|+.++|++||++|++||+|+|.
T Consensus 500 ~~~~~DVlDtWFdS~l~p~s~lgwp~~~~~~~~~~yP~dl~~~G~Dii~fW~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~ 579 (958)
T PLN02943 500 IYQDPDVLDTWFSSALWPFSTLGWPDVSAEDFKKFYPTTVLETGHDILFFWVARMVMMGIEFTGTVPFSYVYLHGLIRDS 579 (958)
T ss_pred eeecCceEEEEEcCccchHHhcCCCccChHHHhccCCCeEEEEeehHHHHHHHHHHHhhhhhcCCCChheEEEeccEECC
Confidence 889999999999999999999999984 5789999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccc
Q 001289 699 HGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINL 778 (1107)
Q Consensus 699 ~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf 778 (1107)
+|+|||||+||||+|.++|+ +||+|++||||++.. .++|++|
T Consensus 580 ~G~KMSKS~GN~i~p~~~i~-------------------------------------~ygaDalR~~l~~~~-~~~d~~f 621 (958)
T PLN02943 580 QGRKMSKTLGNVIDPLDTIK-------------------------------------EFGTDALRFTLALGT-AGQDLNL 621 (958)
T ss_pred CCCcccCcCCCCCCHHHHHH-------------------------------------hcCChHHHHHHHhCC-CCCCccc
Confidence 99999999999999999998 899999999999855 5899999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhhCCC-------------CCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCC
Q 001289 779 DIQRVVGYRQWCNKLWNAVRFSMSKLGEG-------------FVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYE 845 (1107)
Q Consensus 779 ~~~~v~~~r~f~nKl~N~~rf~l~~l~~~-------------~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~ 845 (1107)
+.+.+.+.++|+|||||++||+++++.+. |.+.. ....++..|+||+++|+.+++.++++|++|+
T Consensus 622 s~~~l~~~~~~~~kl~N~~rf~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~D~wilskl~~~i~~v~~~~e~y~ 699 (958)
T PLN02943 622 STERLTSNKAFTNKLWNAGKFVLQNLPSQSDTSAWEHILACKFDKEE--SLLSLPLPECWVVSKLHELIDSVTTSYDKYF 699 (958)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCccc--cccccCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999998876431 22110 1123568999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCC
Q 001289 846 FSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCAT 925 (1107)
Q Consensus 846 f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~ 925 (1107)
|+.|++.+|+|+|+++||+|||.+||+++.++.. ..+.+++.+|+.+++.+++||||||||+|||||++|+..
T Consensus 700 f~~A~~~i~~f~~~~~~d~YiE~~Kprl~~~~~~--~~~~~a~~vL~~vl~~ll~LL~PfmPfitEELwq~L~~~----- 772 (958)
T PLN02943 700 FGDVGREIYDFFWSDFADWYIEASKTRLYHSGDN--SALSRAQAVLLYVFENILKLLHPFMPFVTEELWQALPYR----- 772 (958)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccHhhccCCch--HHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHcCCC-----
Confidence 9999999999999999999999999998765321 145678999999999999999999999999999999742
Q ss_pred CCcceeccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCC--CCcccEEEEecChhHHHHHHHHHHHHHhhhc
Q 001289 926 KESIMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQK--NERLPAIAFCQTKGVSEIIRSHELEIVTLST 1003 (1107)
Q Consensus 926 ~~SI~~a~~P~~~~~~~d~~~e~~~e~v~~vi~~iRslr~~~~~k~i--~~~~~~~I~~~~~~~~~~l~~~~~~I~~L~~ 1003 (1107)
.+||+.++||+++ .+.|+.++..++.+++++++||++|+++ ++ +.++.++|.+.+ +..+.++.+...|+.|++
T Consensus 773 ~~si~~~~wP~~~-~~~d~~~~~~~~~v~~ii~~iR~~r~~~---~i~~~~~~~~~i~~~~-~~~~~~~~~~~~i~~l~~ 847 (958)
T PLN02943 773 KEALIVSPWPQTS-LPKDLKSIKRFENLQSLTRAIRNARAEY---SVEPAKRISASIVASA-EVIEYISKEKEVLALLSR 847 (958)
T ss_pred CCceeecCCCCCc-ccCCHHHHHHHHHHHHHHHHHHHHHHHc---CCCCCCcccEEEecCh-hHHHHHHHHHHHHHHHhc
Confidence 3599999999986 5678889999999999999999999999 88 455666776654 446778899999999997
Q ss_pred cc--eEEEeccCCCCCCCCceEEeeeCCEEEEEecc--ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHH
Q 001289 1004 SS--SLKVLLSGTDEAPTDCAFQNVNENLKVYLKVE--VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQ 1079 (1107)
Q Consensus 1004 v~--~v~i~~~~~~~~p~~~~~~~v~~~~~v~l~l~--iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~ 1079 (1107)
++ ++++... ......+|+..+++.++++++++. ||+++|++||+|+++++++++++++++|+|++|++|||++|+
T Consensus 848 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~l~~~iD~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv 926 (958)
T PLN02943 848 LDLQNVHFTDS-PPGDANQSVHLVASEGLEAYLPLADMVDISAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVV 926 (958)
T ss_pred CcccccccccC-CCccccceeEEEecCceEEEEeccccccHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHH
Confidence 64 7766432 111122455556767899999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001289 1080 EDNAAKLAKLLQEIDFFENESNRLGN 1105 (1107)
Q Consensus 1080 e~~~~Kl~~~~~el~~l~~~l~~l~~ 1105 (1107)
+++++||++++++++.+++.|+.|++
T Consensus 927 ~~e~~kl~~~~~~l~~~~~~l~~l~~ 952 (958)
T PLN02943 927 RGVREKAAEAEEKIKLTKNRLAFLKS 952 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999986
No 7
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.8e-194 Score=1833.99 Aligned_cols=881 Identities=47% Similarity=0.858 Sum_probs=807.3
Q ss_pred hhhhcCCCchhHHHHHHHHHHhcCCcccCC-CCCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeecc
Q 001289 141 KQMAKEYNPSSVEKSWYSWWENSGYFIADN-KSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVP 219 (1107)
Q Consensus 141 ~~~~~~y~p~~vE~~w~~~W~~~~~f~~~~-~~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~ 219 (1107)
..+++.|||+.||.+||++|+++++|++.. +.++++|+|++||||+||.|||||++|++++|+++||+||+||+|+|+|
T Consensus 13 ~~~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~ 92 (1052)
T PRK14900 13 TELAKGYEHREVEARWYPFWQERGYFHGDEHDRTRPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLP 92 (1052)
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCCccCCcccCCCCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCC
Confidence 447889999999999999999999999864 3567899999999999999999999999999999999999999999999
Q ss_pred CCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHH
Q 001289 220 GMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAF 299 (1107)
Q Consensus 220 G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F 299 (1107)
||||||||||.+||+.+...+|++++++||++|+++||+|++++++.|++||++||+|+||+|+|+||||.|+++|+|+|
T Consensus 93 G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F 172 (1052)
T PRK14900 93 GTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVF 172 (1052)
T ss_pred CCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHH
Confidence 99999999999999998777899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCEEEeeeeeeecCCCCcccccccccccccCCcceeeecCcccccccceEEEEeeecCCCcceEEEeecccccc
Q 001289 300 VRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETM 379 (1107)
Q Consensus 300 ~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~ 379 (1107)
.+||++|||||+.++|||||.|+|+|||+||+|+++.. |.+++++|++.+++.+|+|||||||||
T Consensus 173 ~~L~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~~~e~~~---------------~~~~~i~f~l~~~~~~l~vaTTrPeTl 237 (1052)
T PRK14900 173 VRLHEEGLIYREKKLINWCPDCRTALSDLEVEHEEAHQ---------------GELWSFAYPLADGSGEIVVATTRPETM 237 (1052)
T ss_pred HHHHHCCCEEeccceeccCCCCCCCccHHHhcccCCCC---------------CeEEEEEEEecCCCcEEEEEECchhhh
Confidence 99999999999999999999999999999999886442 678899999988888999999999999
Q ss_pred ccCcEEEEcCCCcccccccCcEEecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCc
Q 001289 380 LGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGK 459 (1107)
Q Consensus 380 ~gdtaiaV~P~d~ry~~l~Gk~~~~P~~~~~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~ 459 (1107)
+||+||||||+|+||++|+|++|.||++++.+|||+|..+||++||||+||+|||||++||++|++|||+++++||++|+
T Consensus 238 ~~~~avaV~P~~~~y~~L~G~~~~~Pl~~~~ipIi~d~~~vd~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~ 317 (1052)
T PRK14900 238 LGDTAVAVHPLDPRYMALHGKKVRHPITGRTFPIVADAILVDPKFGTGAVKVTPAHDFNDFEVGKRHGLEMITVIGPDGR 317 (1052)
T ss_pred hcceeEEECCCcHHHHHhcCCEEECCCCCCeeEEEecccccCcCCCCCeEEecCCCChhHHHHHHHcCCCccceECCCcE
Confidence 99999999999999999999999999999999999876569999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCChhhHHHHHHHHHHHcCCeeceeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCC
Q 001289 460 INSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKK 539 (1107)
Q Consensus 460 ~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~ 539 (1107)
|++++| +|.|+++++||+.|++.|++.|++++.+++.|+||+|||||++||+++++||||+|+++++++++++ +++
T Consensus 318 ~~~~~~-~~~Gl~~~ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~~~ie~~~s~qWFi~l~~~k~~~~~~v---~~~ 393 (1052)
T PRK14900 318 MTAEAG-PLAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSATILEPLLSDQWYVRIEPLARPAIEAV---EQG 393 (1052)
T ss_pred EecCCc-ccCCcCHHHHHHHHHHHHHhCCCeecceeeeccCceeCCCCceEEEEeccceeeehHHHHHHHHHHH---hcC
Confidence 999988 9999999999999999999999999999999999999999999999999999999999999999999 878
Q ss_pred ceEEeccccHHHHHHHhccCCCeeeeecCCCcccceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcc
Q 001289 540 KLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFE 619 (1107)
Q Consensus 540 ~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~ 619 (1107)
+++|+|+++++++.+||++++|||||||||||||||+|||.. +.|++++.... .+.+|+ +..
T Consensus 394 ~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~PIP~w~~~~------------~~~~v~~~~~~----~~~~~~--~~~ 455 (1052)
T PRK14900 394 RTRFIPEQWTNTYMAWMRNIHDWCISRQLWWGHQIPAWYCPD------------GHVTVARETPE----ACSTCG--KAE 455 (1052)
T ss_pred CcEEEChHHHHHHHHHHhcCccceEEeecCCCceeCeEEcCC------------CcEEecccccc----cccccC--ccc
Confidence 899999999999999999999999999999999999999852 34565543321 112232 235
Q ss_pred cccCCCceeeEeccCCcccccccCCCCChhhhhhCCcCcccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCC
Q 001289 620 MCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAH 699 (1107)
Q Consensus 620 l~~d~DvlDtWFdSgl~p~s~lgwp~~~~d~~~~yP~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~ 699 (1107)
++|++|||||||||++|||+++|||+++++|++|||+|++++|+||+|||++||+++|+.++|.+||++|++||||+|.+
T Consensus 456 ~~~~~dVlDvWFdS~l~y~s~~g~p~~~~~~~~~~P~d~~~~G~Dii~~W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~ 535 (1052)
T PRK14900 456 LRQDEDVLDTWFSSGLWPFSTMGWPEQTDTLRTFYPTSVMETGHDIIFFWVARMMMMGLHFMGEVPFRTVYLHPMVRDEK 535 (1052)
T ss_pred eecCCceEEEEEcCChHHHHHHcCCCchHHHHhhCCchhhcccccHHhHHHHHHHHHHHHhcCCCccceeEecccEECCC
Confidence 88999999999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccc
Q 001289 700 GRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLD 779 (1107)
Q Consensus 700 G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~ 779 (1107)
|+|||||+||||||.++|+ +||+|+|||||++.++.++|++|+
T Consensus 536 G~KMSKSkGNvIdP~dvIe-------------------------------------~yGaDalR~~L~~~~~~g~D~~fs 578 (1052)
T PRK14900 536 GQKMSKTKGNVIDPLVITE-------------------------------------QYGADALRFTLAALTAQGRDIKLA 578 (1052)
T ss_pred CCCccCCCCCCCCHHHHHH-------------------------------------HhCcHHHHHHHHhcCCCCCCCccc
Confidence 9999999999999999998 899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCC-CCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001289 780 IQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLH-PHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQ 858 (1107)
Q Consensus 780 ~~~v~~~r~f~nKl~N~~rf~l~~l~~~~~p~~~~~-~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~ 858 (1107)
.+++.++++|||+|||+.||+++++.+ |.+..... ....+..|+||+++|+.++..+.++|++|+|+.|++.+|+|+|
T Consensus 579 ~~~l~~~~~f~nkl~N~~R~~~~~~~~-~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~~~e~y~f~~A~~~i~~f~~ 657 (1052)
T PRK14900 579 KERIEGYRAFANKLWNASRFALMNLSG-YQERGEDPARLARTPADRWILARLQRAVNETVEALEAFRFNDAANAVYAFVW 657 (1052)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc-cCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999999999877643 43322111 1235678999999999999999999999999999999999999
Q ss_pred HhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCC-CCCCcceeccCCCC
Q 001289 859 YQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGC-ATKESIMLCEYPSA 937 (1107)
Q Consensus 859 ~~l~d~Yie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~-~~~~SI~~a~~P~~ 937 (1107)
+++||+||+.+|+++++++.. .+..++.+|+.+|+.+++||||||||+||+||++|+...+. ...+||++++||.+
T Consensus 658 ~~~~n~Yie~~k~~l~~~~~~---~~~~~~~~L~~~L~~l~~LLaPfmP~~aEeiw~~L~~~~~~~~~~~SV~~~~wP~~ 734 (1052)
T PRK14900 658 HELCDWYIELAKEALASEDPE---ARRSVQAVLVHCLQTSYRLLHPFMPFITEELWHVLRAQVGASAWADSVLAAEYPRK 734 (1052)
T ss_pred HhhhHHHHHhccHhhccCCHH---HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhccccccCCCCCceeecCCCCC
Confidence 999999999999998765443 45678899999999999999999999999999999753110 11369999999998
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--cc----cEEEEecChhHHHHHHH-HHHHHHhhhccceEEEe
Q 001289 938 VEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQKNE--RL----PAIAFCQTKGVSEIIRS-HELEIVTLSTSSSLKVL 1010 (1107)
Q Consensus 938 ~~~~~d~~~e~~~e~v~~vi~~iRslr~~~~~k~i~~--~~----~~~I~~~~~~~~~~l~~-~~~~I~~L~~v~~v~i~ 1010 (1107)
++ .|+.++..|+.++++++.||++|+++ +|+. ++ .++|.+.+++..+.++. +...|+.|+++++|.++
T Consensus 735 ~~--~d~~~e~~~~~v~~ii~~iR~~R~~~---~i~~~~~l~~~~~~~v~~~~~~~~~~l~~~~~~~i~~l~~~~~v~~~ 809 (1052)
T PRK14900 735 GE--ADEAAEAAFRPVLGIIDAVRNIRGEM---GIPWKVKLGAQAPVEIAVADPALRDLLQAGELARVHRVAGVEGSRLV 809 (1052)
T ss_pred Cc--ccHHHHHHHHHHHHHHHHHHHHHHHc---CCCCCCccCCCCeEEEEcCCHHHHHHHHHHHHHHHHHhhCCCeeEee
Confidence 76 67889999999999999999999999 8844 44 35666666666677888 89999999999999987
Q ss_pred ccCCCCCCCCceEEeeeCCEEEEEecc--ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHH
Q 001289 1011 LSGTDEAPTDCAFQNVNENLKVYLKVE--VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAK 1088 (1107)
Q Consensus 1011 ~~~~~~~p~~~~~~~v~~~~~v~l~l~--iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~ 1088 (1107)
.. ....+.+|++.+++.+++||+++. ||+++|++||+|+++++++++++++++|+|++|+.++|+++++++++++++
T Consensus 810 ~~-~~~~~~~~~~~~v~~~~ev~l~l~~~iD~~~e~~rLekel~kl~Kel~kl~~~L~n~~f~~kap~~~veka~~kl~~ 888 (1052)
T PRK14900 810 VA-AATAPAPQSAVGVGPGFEVRVPLAGVIDLAAETARVDKEIGKVDQDLAVLERKLQNPSFVQNAPPAVVEKDRARAEE 888 (1052)
T ss_pred cc-ccccCcccceEEecCceEEEEECCcccCHHHHHhhHHHHHHHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHHHH
Confidence 54 222466888888888999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhc
Q 001289 1089 LLQEIDFFENESNRLGN 1105 (1107)
Q Consensus 1089 ~~~el~~l~~~l~~l~~ 1105 (1107)
++++++.+++.|+.|+.
T Consensus 889 ~~~~l~~le~~l~~L~~ 905 (1052)
T PRK14900 889 LREKRGKLEAHRAMLSG 905 (1052)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999999875
No 8
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=4e-193 Score=1815.44 Aligned_cols=856 Identities=48% Similarity=0.847 Sum_probs=791.1
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCcccCCCCCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCC
Q 001289 143 MAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMD 222 (1107)
Q Consensus 143 ~~~~y~p~~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D 222 (1107)
|++.|||++||++||++|+++|+|+++.+.++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+||||
T Consensus 1 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D 80 (861)
T TIGR00422 1 MPKDYDPHEVEKKWYKKWEKSGFFKPDGNSNKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTD 80 (861)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcccCcccCCCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcC
Confidence 46889999999999999999999999876667899999999999999999999999999999999999999999999999
Q ss_pred ccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHH
Q 001289 223 HAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRL 302 (1107)
Q Consensus 223 ~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L 302 (1107)
|||||||.+||+++. ..|++++++|||+|+++||+|+++|++.|++||++||+|+||+|+|+||||.|+++|+|+|++|
T Consensus 81 ~~Glp~e~~vek~~~-~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L 159 (861)
T TIGR00422 81 HAGIATQVKVEKKLG-AEGKTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRL 159 (861)
T ss_pred cCCCcHHHHHHHHhc-ccCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHH
Confidence 999999999999874 4689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCEEEeeeeeeecCCCCcccccccccccccCCcceeeecCcccccccceEEEEeeecCCCc-ceEEEeecccccccc
Q 001289 303 YKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGL-GEIVVATTRVETMLG 381 (1107)
Q Consensus 303 ~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~-~~i~vaTTrPeT~~g 381 (1107)
|++|||||+.++|||||.|+|+|||+||+|+++. |.+++++|++.+++ ++|+|||||||||+|
T Consensus 160 ~~~GlIy~~~~~v~wcp~~~t~lsd~Ev~~~~~~----------------~~~~~i~f~~~~~~~~~l~vaTtrPeTl~~ 223 (861)
T TIGR00422 160 YEKGLIYRGEYLVNWDPKLNTAISDIEVEYKEVK----------------GKLYYIRYPLANGSKDYLVVATTRPETMFG 223 (861)
T ss_pred HHCCCeeecCcccccCCCCCCcchHhHhhccccc----------------ceEEEEEEEecCCCCCEEEEEeCCcchhhh
Confidence 9999999999999999999999999999998876 57889999997765 799999999999999
Q ss_pred CcEEEEcCCCcccccccCcEEecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccc
Q 001289 382 DTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKIN 461 (1107)
Q Consensus 382 dtaiaV~P~d~ry~~l~Gk~~~~P~~~~~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~ 461 (1107)
||||||||+|+||++|+|+++.||++++.+|||+|++ |+++||||+||+|||||++||++|++|||+++++||++|+++
T Consensus 224 ~~av~V~P~~~ry~~l~g~~~~~P~~~~~ipii~~~~-V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~ 302 (861)
T TIGR00422 224 DTAVAVHPEDERYKHLIGKKVILPLTGRKIPIIADEY-VDMEFGTGAVKVTPAHDFNDYEWGKRHNLEFINILDEDGLLN 302 (861)
T ss_pred CeEEEECCCchHHHHhcCCEEEcCCCCCcceeeecCC-CCcccCCCceEecCCCChHHHHHHHHcCCCccceeCCCCeEc
Confidence 9999999999999999999999999999999999995 999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCChhhHHHHHHHHHHHcCCeeceeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCce
Q 001289 462 SNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKL 541 (1107)
Q Consensus 462 ~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i 541 (1107)
++|| .|+||++++||++|++.|+++|++.+.+++.|.+|+|+|||++||+++++||||+|+++++++++++ +++++
T Consensus 303 ~~~~-~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~g~~ve~~~~~qWFi~~~~~~~~~~~~~---~~~~i 378 (861)
T TIGR00422 303 ENAG-KYQGLTRFEARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFVKVEKLADKALEAA---EEGEI 378 (861)
T ss_pred CCCc-ccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecCcceEecHHHHHHHHHHh---hcCCe
Confidence 9999 9999999999999999999999999999999999999999999999999999999999999999999 88899
Q ss_pred EEeccccHHHHHHHhccCCCeeeeecCCCcccceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccc
Q 001289 542 ELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMC 621 (1107)
Q Consensus 542 ~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~ 621 (1107)
+|+|+++++++.+||++++|||||||||||||||+|+|..| +.+.++.+..++...+ .++ ....+.
T Consensus 379 ~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~piP~w~~~~~-----------~~~~v~~~~~~~~~~~--~~~-~~~~~~ 444 (861)
T TIGR00422 379 KFVPKRMEKRYLNWLRNIKDWCISRQLIWGHRIPVWYCKEC-----------GEVYVAKEEPLPDDKT--NTG-PSVELE 444 (861)
T ss_pred EEEChHHHHHHHHHHhccccceeeeecccCCcceEEEECCC-----------CcEEeccchHHhhhhh--ccC-CcccEE
Confidence 99999999999999999999999999999999999999655 3455566655554432 222 234699
Q ss_pred cCCCceeeEeccCCcccccccCCCCChhhhhhCCcCcccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCc
Q 001289 622 QDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGR 701 (1107)
Q Consensus 622 ~d~DvlDtWFdSgl~p~s~lgwp~~~~d~~~~yP~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~ 701 (1107)
|++||||||||||+||++++|||+++.+|++|||+|++++|+||+|||+++|+++++.++|+.||++|++||+|+|.+|+
T Consensus 445 ~~~dVlDtWFdS~l~~~s~~g~p~~~~~~~~~~P~d~~~~G~Dii~fw~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~ 524 (861)
T TIGR00422 445 QDTDVLDTWFSSSLWPFSTLGWPDETKDLKKFYPTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEVYIHGLVRDEQGR 524 (861)
T ss_pred ECCCcccceeccchHHHHHhCCCCChHHHhhcCCcceeecchhhhhHHHHHHHHHHHHhcCCCchheEEEeeEEECCCCC
Confidence 99999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHH
Q 001289 702 KMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQ 781 (1107)
Q Consensus 702 KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~ 781 (1107)
|||||+||+|+|.++|+ +||+|+|||||++.++.++|++|+.+
T Consensus 525 KMSKS~GN~i~p~~~i~-------------------------------------~ygaDalR~~l~~~~~~~~d~~f~~~ 567 (861)
T TIGR00422 525 KMSKSLGNVIDPLDVIE-------------------------------------KYGADALRFTLASLVTPGDDINFDWK 567 (861)
T ss_pred CCCcCCCCCCCHHHHHH-------------------------------------HhChHHHHHHHHhCCCCCCCceecHH
Confidence 99999999999999999 89999999999999998999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhH
Q 001289 782 RVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQF 861 (1107)
Q Consensus 782 ~v~~~r~f~nKl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l 861 (1107)
.+.++++|+|||||+.||+.+++.. +.. ........+..|+||+++|+.+++.++++|++|+|+.|++.+++|+|+++
T Consensus 568 ~~~~~~~~~nkl~N~~rf~~~~~~~-~~~-~~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~~~f~~A~~~l~~f~~~~~ 645 (861)
T TIGR00422 568 RVESARNFLNKLWNASRFVLMNLSD-DLE-LSGGEEKLSLADRWILSKLNRTIKEVRKALDKYRFAEAAKALYEFIWNDF 645 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc-ccc-cccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999876543 210 00001235678999999999999999999999999999999999988999
Q ss_pred hHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCcceeccCCCCCCCC
Q 001289 862 CDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGW 941 (1107)
Q Consensus 862 ~d~Yie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~a~~P~~~~~~ 941 (1107)
||+||+.+|||++.++.. .+..++.+|+.+|+.+++||||||||+||+||++|+.. .+||++++||++++.+
T Consensus 646 ~n~Yie~~k~~~~~~~~~---~~~~~~~~l~~~l~~~~~lL~Pf~P~itEelw~~L~~~-----~~si~~~~~P~~~~~~ 717 (861)
T TIGR00422 646 CDWYIELVKYRLYNGNEA---EKKAARDTLYYVLDKALRLLHPFMPFITEEIWQHFKEG-----ADSIMLQSYPVVDAEF 717 (861)
T ss_pred HHHHHHHhHHHHcCCCcH---HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhCccc-----CCceeecCCCCccccc
Confidence 999999999998765433 56788999999999999999999999999999999752 3699999999999889
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhccCCC--CcccEEEEecChhHHHHHHHHHHHHHhhhccceEEEeccCCCCCCC
Q 001289 942 TDERAEFEMDLVESTVRCIRSLRAEVLGKQKN--ERLPAIAFCQTKGVSEIIRSHELEIVTLSTSSSLKVLLSGTDEAPT 1019 (1107)
Q Consensus 942 ~d~~~e~~~e~v~~vi~~iRslr~~~~~k~i~--~~~~~~I~~~~~~~~~~l~~~~~~I~~L~~v~~v~i~~~~~~~~p~ 1019 (1107)
.|++++..|+.++++++.+|++|+++ +|+ .++.+++.+.+....+.++.+...|+.|+++++|+++.. . .+.
T Consensus 718 ~d~~~e~~~~~l~~ii~~iR~~r~~~---~i~~~~~l~~~i~~~~~~~~~~l~~~~~~I~~l~~v~~v~~~~~-~--~~~ 791 (861)
T TIGR00422 718 VDEEAEKAFELLKEIIVSIRNLKAES---NIPPNAPLKVLLIYTEAETAERLKLNAVDIKGAINFSEVEVVIE-K--PEV 791 (861)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHc---CCCCCCcceEEEEeCCHHHHHHHHHHHHHHhhhcCCCceEeecc-C--Ccc
Confidence 99999999999999999999999999 884 445556656555566788999999999999999998754 2 234
Q ss_pred CceEEeeeCCEEEEEecc--ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHH
Q 001289 1020 DCAFQNVNENLKVYLKVE--VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLA 1087 (1107)
Q Consensus 1020 ~~~~~~v~~~~~v~l~l~--iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~ 1087 (1107)
+|+...+..++++++++. +|.++|++||.|+++++++++++++++|+|++|++|||++|++++++||+
T Consensus 792 ~~~~~~v~~~~~~~~~l~~~~d~~~e~~~l~k~l~~~~~~i~~~~~kl~n~~f~~kAp~~vv~~e~~kl~ 861 (861)
T TIGR00422 792 TEAVVELVPGFEIIIPVKGLINKAKELARLQKQLDKEKKEVIRIEGKLENEGFVKKAPKEVIEKEKEKLE 861 (861)
T ss_pred ccceEEEccCcEEEEEhHhhcCHHHHHHHHHHHHHHHHHHHHHHHhhhcCchhhhcCCHHHHHHHHhhcC
Confidence 677777888999999988 99999999999999999999999999999999999999999999999984
No 9
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=6.5e-176 Score=1665.47 Aligned_cols=811 Identities=21% Similarity=0.348 Sum_probs=709.0
Q ss_pred cchhhhcCCCchhHHHHHHHHHHhcCCcccCCC--CCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeee
Q 001289 139 MSKQMAKEYNPSSVEKSWYSWWENSGYFIADNK--SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNAL 216 (1107)
Q Consensus 139 ~~~~~~~~y~p~~vE~~w~~~W~~~~~f~~~~~--~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl 216 (1107)
|...+++.|||.++|.+|+++|+++++|++..+ .++++|+|++|||||||.||||||+|++++|+++||+||+||+|+
T Consensus 64 ~~~~~~~~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~ 143 (1205)
T PTZ00427 64 TFTGVSENPNIVEEEEKVLKYWKSIDAFNTSNKLAKNKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVE 143 (1205)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHhCCCcccCccccCCCCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeec
Confidence 345677889999999999999999999998764 456789999999999999999999999999999999999999999
Q ss_pred eccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHH
Q 001289 217 WVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVT 296 (1107)
Q Consensus 217 ~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~ 296 (1107)
|+|||||||||||.+|||+|.........++|+++|+++|++|+.+|++.+++|+++||+|+||+++|+||||.|.++|+
T Consensus 144 ~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~ 223 (1205)
T PTZ00427 144 RKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVW 223 (1205)
T ss_pred cCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHH
Confidence 99999999999999999987432223334699999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEeeeeeeecCCCCcccccccc--cccccCCcce-eeecC-------------cccccccceEEEEee
Q 001289 297 EAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEV--DYVDIPKREM-RNVPG-------------YEKQVEFGVLTSFAY 360 (1107)
Q Consensus 297 ~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EV--e~~e~~~~t~-~~vp~-------------y~~~~~~g~l~~~~y 360 (1107)
|+|.+||++|||||+.++|+|||.|+|+|||+|| +|+++.+++. +++|. +..+.++|.++++.|
T Consensus 224 ~~f~~L~ekGlIYr~~k~V~wcp~c~TaLS~~EV~~~ykd~~dpsi~v~F~l~~~~~~~~~~~~~~~~~~~~~~~~~i~y 303 (1205)
T PTZ00427 224 WVFSELYKNNYVYKSFKVMPYSCKCNTPISNFELNLNYKDTPDPSIIISFVLCSDFPKVEEECNIEEDKQLLGEKYSVLY 303 (1205)
T ss_pred HHHHHHHHCCCEEecceeeccCCCCCCchhHHHhhcccccccCceEEEEeecccccccccccccccccccccccceeecc
Confidence 9999999999999999999999999999999999 7999998864 45533 344667899999999
Q ss_pred ecC-----------------CCcceEEEeeccccccccCcEEEEcCCCc--cc---------------------------
Q 001289 361 PLE-----------------GGLGEIVVATTRVETMLGDTAIAIHPEDA--RY--------------------------- 394 (1107)
Q Consensus 361 ~l~-----------------~~~~~i~vaTTrPeT~~gdtaiaV~P~d~--ry--------------------------- 394 (1107)
++. .++.+++||||||||||||+||||||+++ +|
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~lliwTTtPwTLpan~AlaVnPd~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~ 383 (1205)
T PTZ00427 304 NNKRENSNNGNNNSTNNVCYAQHSEILAWTTTPWTLPSNLALCVNEHFTYLRIHHVKSNRVVIVGECRLEWIMKELKWNV 383 (1205)
T ss_pred ccccccccccccccccccccCCCCEEEEEECCchhhhhceEEEECCCCeEEEEEecCCCeEEEEehHHHHHHHHhhcccc
Confidence 872 12468999999999999999999999975 22
Q ss_pred -----------ccccCcEEecCC---------CCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCC------
Q 001289 395 -----------SHLHGKFAIHPF---------NGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNL------ 448 (1107)
Q Consensus 395 -----------~~l~Gk~~~~P~---------~~~~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L------ 448 (1107)
++|+|++|.+|| .++.+|||+|++ |++++|||+||+|||||++||++|++|||
T Consensus 384 ~~~~v~~~~~G~~L~g~~Y~pl~~~~~~~~~~~~~~~pVi~~d~-V~~~~GTGiVh~aPahg~~Dy~v~~k~gL~~~~~~ 462 (1205)
T PTZ00427 384 EDLKIVNRFKGKELKGLRYKPLFTNFYEKYNFKERAYKILADDF-VTDDAGTGIVHCAPTYGEDDFRVCKKNGVIDPEKN 462 (1205)
T ss_pred cccEEEEEeechhhCCCeeeCCccccccccccCCceeEEEccCc-cCCCCCceeeEecCCCChhHHHHHHHcCCCCcccc
Confidence 245688888887 267899999995 99999999999999999999999999999
Q ss_pred ccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCeeceeccccccceeccCCCeeEecccccccccccHHHHH
Q 001289 449 EFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAME 528 (1107)
Q Consensus 449 ~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~ 528 (1107)
+++++||++|+|++++| +|+|+.++|||+.|++.|+++|++++.+++.|+||+|||||+||++++++||||++++++++
T Consensus 463 ~~~~~vd~~G~~~~~~~-~~~G~~v~dA~~~Ii~~Lk~~g~L~~~e~~~H~yP~cwR~~tpli~~a~~QWFI~~~~~k~~ 541 (1205)
T PTZ00427 463 IFIDPLDANGYFTNEVE-EVQNLYIKEADNVIKKKLKNENRLLSNNTIVHSYPFCWRSDTPLIYRAIPAWFIRVSNSTNE 541 (1205)
T ss_pred ccccccCCCceecCCCc-ccCCCCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecceeEEeCcHHHHH
Confidence 27899999999999988 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCCceEEecccc-HHHHHHHhccCCCeeeeecCCCcccceeEEEccCcchhhccCCCCCceEEecCHHHHHH
Q 001289 529 ALYAVMDDDKKKLELIPRQY-TAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALA 607 (1107)
Q Consensus 529 a~~~v~~~~~~~i~~~P~~~-~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~ 607 (1107)
++++. ++++|+|+++ +++|.+||+|++|||||||||||||||+|+|..++ .+++..+.++..+
T Consensus 542 ~l~~~-----~~i~w~P~~~~~~r~~~wl~n~~DWcISRqR~WGtPIPvW~~~~~~-----------~~~~i~s~~el~~ 605 (1205)
T PTZ00427 542 LVKNN-----ETTYWIPAHIKEKKFHNWIKDAKDWCISRNRYWGTPIPIWADEKME-----------TVICVESIKHLEE 605 (1205)
T ss_pred HHHcC-----CccEEeCchhhHhHHHHHHhcCccceeeeccccCccceeEEcCCCC-----------eEeccCCHHHHHH
Confidence 99876 7899999999 69999999999999999999999999999996542 2333333333222
Q ss_pred HHh----------------hhcCC--CCcccccCCCceeeEeccCCcccccccCCC--CChhhhhhCCcCcccccccccc
Q 001289 608 VAN----------------KKFSG--KKFEMCQDPDVLDTWFSSGLFPLSVLGWPD--DTDDLKAFYPTSVLETGHDILF 667 (1107)
Q Consensus 608 ~~~----------------~~~~~--~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~--~~~d~~~~yP~dl~~tG~Dil~ 667 (1107)
... -.||. ....++|++||||||||||+||++++|||. ++++|+++||+|++++|+||+|
T Consensus 606 ~~~~~~~~dlh~~~iD~~~~~~~~g~~~~~~~r~~DVlD~WFdSg~~p~a~~~~P~~~~~~~f~~~fPaD~i~eG~Dq~r 685 (1205)
T PTZ00427 606 LSGVKNINDLHRHFIDHIEIKNPKGKTYPKLKRIPEVFDCWFESGSMPYAKVHYPFSTEKEDFHKIFPADFIAEGLDQTR 685 (1205)
T ss_pred HhccccchhhcccccChhhccCCccccccceeecCceEEEEEeCCCChHHHhCCCcccchhhHhccCCceEEEEecchhc
Confidence 111 01221 112589999999999999999999999998 4678999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccC
Q 001289 668 FWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQK 747 (1107)
Q Consensus 668 fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~ 747 (1107)
|||++|+++|+.++|+.||++|++||||+|++|+|||||+||||||.++|+
T Consensus 686 gWf~s~l~~s~~l~~~~PfK~VlvHG~Vld~dG~KMSKSlGNvIDP~evI~----------------------------- 736 (1205)
T PTZ00427 686 GWFYTLLVISTLLFDKAPFKNLICNGLVLASDGKKMSKRLKNYPDPLYILD----------------------------- 736 (1205)
T ss_pred cHHHHHHHHHHHhcCCCCcceeEEccEEEcCCCCCcccCCCCCCCHHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCchHHHHHHHhccC-ccccccccHHHHH-HHHHHHHHHHHHHHHHhhhhCC-------CCCCCCCCCCCC
Q 001289 748 ADFPNGIPECGTDALRFALVSYTA-QSDKINLDIQRVV-GYRQWCNKLWNAVRFSMSKLGE-------GFVPPLKLHPHN 818 (1107)
Q Consensus 748 ~~fp~gi~~~GaDaLRf~L~~~~~-~~~Dinf~~~~v~-~~r~f~nKl~N~~rf~l~~l~~-------~~~p~~~~~~~~ 818 (1107)
+||||||||||++.+. .++|++|+.+.+. .+++|++++||+++|+++++.+ +|.+........
T Consensus 737 --------kYGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~r~~l~klwN~~rF~~~~i~~~~~~~~~~f~~~~~~~~~~ 808 (1205)
T PTZ00427 737 --------KYGADSLRLYLINSVAVRAENLKFQEKGVNEVVKSFILPFYHSFRFFSQEVTRYECLNKKQFLFNTDYIYKN 808 (1205)
T ss_pred --------hcCCcHHHHHHHhcCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCcCccccccc
Confidence 9999999999998766 4789999999985 7899999999999999886642 222211100123
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHHHHhhcccccCCC-cccHHHHHHHHHHHHHHHHH
Q 001289 819 LPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDN-PAFASERSAAQHVLWVCLET 897 (1107)
Q Consensus 819 ~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~~~-~~~~~~~~~a~~~L~~~l~~ 897 (1107)
.+.+|+||+++|+++++.++++|++|+|+.|++.|++|++ ++|||||+.+|++++.+. .. .+.+++.||+.+|..
T Consensus 809 ~~~~DrWILs~l~~li~~v~~~me~Y~f~~A~~~i~~Fi~-~lsnwYIe~~K~rl~~~~~~~---~~~~a~~tL~~vL~~ 884 (1205)
T PTZ00427 809 DNIMDQWIFSSVQSLTKSVHTEMKAYKLYNVLPKLLQFIE-NLTNWYIRLNRDRMRGSLGEE---NCLQSLCTTYRTLHL 884 (1205)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HhccHHHHHcchhhccCCCcH---HHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999995 699999999999988652 22 566899999999999
Q ss_pred HHHHHhchhhHHHHHHHHhCCCCCCC--------------------CCCCcceeccCCCCCCCC-CcHHHHHHHHHHHHH
Q 001289 898 GLRLLHPFMPFVTEELWQRLPQPKGC--------------------ATKESIMLCEYPSAVEGW-TDERAEFEMDLVEST 956 (1107)
Q Consensus 898 ~l~LL~PfmPfitEelwq~L~~~~~~--------------------~~~~SI~~a~~P~~~~~~-~d~~~e~~~e~v~~v 956 (1107)
+++||||||||+||+|||+|++..+. ...+|||++.||++++.+ .|++++..|+.++++
T Consensus 885 ~~~LLaPf~PfiaEeiyq~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Svh~~~~P~~~~~~~~d~~~e~~~~~~~~i 964 (1205)
T PTZ00427 885 FTVLMAPFTPFITEYIYQQLRRVKSTNEHNENNETGNTKEGDLNRGVIHKSVHFIMLPQVDEKYIIDYEIIELIEKMKDV 964 (1205)
T ss_pred HHHHccccchHHHHHHHHHhhhccccccccccccccccccccccccCCCCeeEeeCCCCCcchhccCHHHHHHHHHHHHH
Confidence 99999999999999999999752100 013699999999998876 799999999999999
Q ss_pred HHHHHHHHHHhhccCCCCcccE---EEEecChhHHHHHHHHHHHHHhhhccceEEEec
Q 001289 957 VRCIRSLRAEVLGKQKNERLPA---IAFCQTKGVSEIIRSHELEIVTLSTSSSLKVLL 1011 (1107)
Q Consensus 957 i~~iRslr~~~~~k~i~~~~~~---~I~~~~~~~~~~l~~~~~~I~~L~~v~~v~i~~ 1011 (1107)
+..+|++|++. +++.+.++ .|.+.++...+.++.+.+.|+..+|+.+|++..
T Consensus 965 i~~~R~~R~~~---~i~~r~pl~~~~v~~~~~~~~~~~~~~~~~i~~e~nv~~v~~~~ 1019 (1205)
T PTZ00427 965 ILLGRVLRERR---KVASKKPLKSITILHPNESYFKNFDQISNYIKEELNVLNVECSN 1019 (1205)
T ss_pred HHHHHHHHHHc---CCCCCCccceeEEecCcHHHHHHHHHHHHHHHHhhCcceEEEEe
Confidence 99999999999 88666554 344455555677888899999999999998764
No 10
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6e-175 Score=1658.34 Aligned_cols=838 Identities=27% Similarity=0.420 Sum_probs=737.9
Q ss_pred chhhhcCCCchhHHHHHHHHHHhcCCcccCCC--CCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeee
Q 001289 140 SKQMAKEYNPSSVEKSWYSWWENSGYFIADNK--SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALW 217 (1107)
Q Consensus 140 ~~~~~~~y~p~~vE~~w~~~W~~~~~f~~~~~--~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~ 217 (1107)
..++++.|||.++|++|+++|+++++|++..+ .++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|
T Consensus 4 ~~~~~~~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~ 83 (975)
T PRK06039 4 YPEVDSQPDFPALEEEVLKFWKENDIFEKSIENREGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVER 83 (975)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHCCCcccCccccCCCCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccC
Confidence 34577899999999999999999999998653 4678999999999999999999999999999999999999999999
Q ss_pred ccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHH
Q 001289 218 VPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTE 297 (1107)
Q Consensus 218 ~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~ 297 (1107)
+|||||||||||.+|||++........+++|+++|+++|++|+.+|++.|++||++||+|+||+|+|+||||.|+++|+|
T Consensus 84 ~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~ 163 (975)
T PRK06039 84 RAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWW 163 (975)
T ss_pred cCCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHH
Confidence 99999999999999999874322334568999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEeeeeeeecCCCCccccccccc--ccccCCcceeeecCcccccccceEEEEeeecCC-CcceEEEeec
Q 001289 298 AFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVD--YVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEG-GLGEIVVATT 374 (1107)
Q Consensus 298 ~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe--~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~-~~~~i~vaTT 374 (1107)
+|.+||++|||||+.++|||||.|+|+|||+||+ |+++.+ ..++++|++.+ ++.+|+||||
T Consensus 164 ~F~~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~----------------~~~~v~f~l~~~~~~~l~i~TT 227 (975)
T PRK06039 164 ALKQLYDKGLLYKGYRVVPYCPRCETPLSNHEVAQGYKDVKD----------------PSVYVKFKLKGEENEYLLAWTT 227 (975)
T ss_pred HHHHHHHCCCEEecceeeeecCCCCCCccHHHHhhcccccCC----------------ceEEEEEEecCCCCCEEEEEEC
Confidence 9999999999999999999999999999999999 887774 45689999964 5679999999
Q ss_pred cccccccCcEEEEcCCC---------ccc-----------------------ccccCcEEecCCC---C--CccceEecC
Q 001289 375 RVETMLGDTAIAIHPED---------ARY-----------------------SHLHGKFAIHPFN---G--RKIPIICDA 417 (1107)
Q Consensus 375 rPeT~~gdtaiaV~P~d---------~ry-----------------------~~l~Gk~~~~P~~---~--~~iPIi~d~ 417 (1107)
|||||+||+||||||++ ++| ++|+|+++.|||. + +.+|||+|+
T Consensus 228 rP~Tl~~n~avaV~P~~~Y~~~~~~~~~yi~a~~~~~~~~~~~~~~~~~~~G~~L~G~~~~~P~~~~~~~~~~~pii~~~ 307 (975)
T PRK06039 228 TPWTLPSNLALAVHPDIDYVKVEGGGEVYILAEALLEKVLKEDYEVVETFKGSELEGLEYEPPFPYFADEKNAFRVVLAD 307 (975)
T ss_pred CccccccceEEEECCCCceEEEecCCeEEEEhHHHHHHHhhcccEEEeeecCccccCCEEECCcccccCCcceeEEEecC
Confidence 99999999999999998 677 7899999999997 3 479999999
Q ss_pred ccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCeeceeccc
Q 001289 418 ILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNE 497 (1107)
Q Consensus 418 ~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~~~~ 497 (1107)
+ |++++|||+||+|||||++||++|++|||+++++||++|+|++++| +|+|+.++|||++|++.|+++|++++.+++.
T Consensus 308 ~-V~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~~id~~G~~~~~~~-~~~G~~v~eA~~~Ii~~L~~~g~l~~~~~~~ 385 (975)
T PRK06039 308 F-VTTEDGTGIVHIAPAFGEDDFEVGKKYGLPVVCPVDDDGRFTEEVP-DYAGKFVKDADKEIIRDLKERGLLFKAETYE 385 (975)
T ss_pred c-cCCCCCccceeeCCCCChHHHHHHHHcCCCccceeCCCceEcCCCc-cccCCCHHHhhHHHHHHHHhCCCEeeeeeec
Confidence 5 9999999999999999999999999999999999999999999888 9999999999999999999999999999999
Q ss_pred cccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHH-HHHHHhccCCCeeeeecCCCccccee
Q 001289 498 MRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTA-EWRRWLEAIRDWCVSRQLWWGHQIPA 576 (1107)
Q Consensus 498 ~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~-~~~~wl~~l~DWcISRQ~~WG~pIP~ 576 (1107)
|+||+|||||++|++++++||||+++++++++++++ ++++|+|+..++ ++.+||++++|||||||||||||||+
T Consensus 386 h~~p~c~R~g~pv~~~~~~qWFi~~~~~k~~ll~~~-----~~i~~~P~~~~~~~~~~wl~~l~DW~ISRqr~WG~PIPi 460 (975)
T PRK06039 386 HSYPHCWRCDTPLIYYATESWFIRVTKIKDRMLELN-----QKINWYPEHIKDGRFGKWLENARDWNISRNRYWGTPLPI 460 (975)
T ss_pred CCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHhh-----CCeEEECcccchhhHHHHHhcCccceeeeccccCCcceE
Confidence 999999999999999999999999999999999998 569999999999 99999999999999999999999999
Q ss_pred EEEccCcchhhccCCCCCceEEecCHHHHHHHH-----------------hhhcCCCCcccccCCCceeeEeccCCcccc
Q 001289 577 WYVTLEDDELKELGSYNDHWIVARDEKEALAVA-----------------NKKFSGKKFEMCQDPDVLDTWFSSGLFPLS 639 (1107)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~-----------------~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s 639 (1107)
|+|..|+ .+.+..+.++..... ...||. +..++|++||||||||||++|++
T Consensus 461 w~~~~~g-----------~~~v~~~~~el~~~~g~~~~~~~l~~~~~d~~~~~~~~-~~~~~r~~dVlDvWFdSg~~p~a 528 (975)
T PRK06039 461 WRCEDCG-----------RIDVIGSIEELEELFGEDVEPIDLHRPYVDEVTLPCPD-GGTMRRVPDVIDVWFDSGSMPYA 528 (975)
T ss_pred EEecCCC-----------eEEEeccHHHHHHHhCCCcchhhhcccccccccccCCC-CcceEeccccccceeecCCccHH
Confidence 9997653 233333444332221 112332 44699999999999999999999
Q ss_pred cccCCCC-ChhhhhhCCcCcccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCcccccc
Q 001289 640 VLGWPDD-TDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVIN 718 (1107)
Q Consensus 640 ~lgwp~~-~~d~~~~yP~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~ 718 (1107)
++|||.+ ++.|++|||+|++++|+||+||||++|+++|+.++|+.||++|++||+|+|.+|+|||||+||||||.++|+
T Consensus 529 ~~~~p~~~~~~f~~~~Pad~~~~G~Di~r~Wf~~l~~~~~~~~~~~pfk~v~~hG~Vld~~G~KMSKSlGNvIdP~dli~ 608 (975)
T PRK06039 529 QLHYPFENKEWFEKHFPADFIVEGIDQTRGWFYTLLALSTALFDRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFD 608 (975)
T ss_pred HhCCcccChhhhhccCCceEEEechhhHhhHHHHHHHHHHHhcCCCcccEEEEeeeEECCCCCCcCCCCCCcCCHHHHHH
Confidence 9999986 456899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHH-HHHHHHHHHHHHHHH
Q 001289 719 GISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQR-VVGYRQWCNKLWNAV 797 (1107)
Q Consensus 719 g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~-v~~~r~f~nKl~N~~ 797 (1107)
+||+|||||||++.++.++|++|+.+. +..+++|+|+|||++
T Consensus 609 -------------------------------------~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~l~kl~N~~ 651 (975)
T PRK06039 609 -------------------------------------KYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFLLTLWNVY 651 (975)
T ss_pred -------------------------------------HhChHHHHHHHHhCCCCCCCceechhHHHHHHHHHHHHHHHHH
Confidence 899999999999998889999999999 788899999999999
Q ss_pred HHHhh--hhCCCCCCCCC-CCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHHHHhhccccc
Q 001289 798 RFSMS--KLGEGFVPPLK-LHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFA 874 (1107)
Q Consensus 798 rf~l~--~l~~~~~p~~~-~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~ 874 (1107)
+|++. ++. +|.+... ......+..|+||+++|+.+++.++++|++|+|+.|++.+++|+ +++||+|++.+|++++
T Consensus 652 ~f~~~y~~~~-~~~~~~~~~~~~~~~~~D~wils~l~~li~~v~~a~e~y~~~~A~~~l~~f~-~~lsn~Yi~~~k~r~w 729 (975)
T PRK06039 652 SFFVLYANLD-GFDYPPAEDEVDSLNELDRWILSRLNSLVKEVTEALDNYDITKAARAIRDFV-DDLSNWYIRRSRRRFW 729 (975)
T ss_pred HHHHHHhhhc-cCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-HHHHHHHHHHhhhhhc
Confidence 99863 332 2332211 11224568899999999999999999999999999999999998 9999999999998876
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCcceeccCCCCCCCCCcHHHHHHHHHHH
Q 001289 875 GDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWTDERAEFEMDLVE 954 (1107)
Q Consensus 875 ~~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~a~~P~~~~~~~d~~~e~~~e~v~ 954 (1107)
..... ..+++++.+|+.+|+.+++||||||||+||+||+.|+.. ...+||+.+.||++++.+.|+.++..|+.++
T Consensus 730 ~~~~~--~~~~~a~~~L~~~L~~l~~lLaPf~Pf~aEei~~~L~~~---~~~~sv~~~~~P~~~~~~~d~~le~~~~~~~ 804 (975)
T PRK06039 730 KEEDD--PDKLAAYATLYTVLETLSRLAAPFTPFIAEEIYQNLTRE---DAPESVHLADWPEVDESLIDEELEEAMDLVR 804 (975)
T ss_pred cCCCc--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccc---CCCCeeEecCCCCCccccCCHHHHHHHHHHH
Confidence 54211 146778999999999999999999999999999999752 1246999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCcccE---EEEecChhHHHHHHHHHHHHHhhhccceEE----EeccCCCCCCCCceEEeee
Q 001289 955 STVRCIRSLRAEVLGKQKNERLPA---IAFCQTKGVSEIIRSHELEIVTLSTSSSLK----VLLSGTDEAPTDCAFQNVN 1027 (1107)
Q Consensus 955 ~vi~~iRslr~~~~~k~i~~~~~~---~I~~~~~~~~~~l~~~~~~I~~L~~v~~v~----i~~~~~~~~p~~~~~~~v~ 1027 (1107)
++++.+|++|++. +++.+.++ +|.+.+ +..+.++.+.+.|+.++|+.+|. +.. ..|+|..+...
T Consensus 805 ~ii~~~r~~r~~~---~i~~~~pl~~~~v~~~~-~~~~~~~~~~~~i~~~~nv~~v~~~~~~~~----~~~~~~~~~~~- 875 (975)
T PRK06039 805 EIVSLGRSARKKA---GIKVRQPLSKITVAEDE-EVAEALERYEDLIKDELNVKEVPEEVEIEE----EAPEGYAAAEE- 875 (975)
T ss_pred HHHHHHHHHHHHc---CCCCCCccceEEEecCH-HHHHHHHHHHHHHHHHhCcccchhheEEEE----ecCCCceEEee-
Confidence 9999999999999 88666543 333333 35567888999999999998874 322 24677665554
Q ss_pred CCEEEEEeccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 001289 1028 ENLKVYLKVEVDIEAEREKIRTKLTETQKQREKLEKIINAP 1068 (1107)
Q Consensus 1028 ~~~~v~l~l~iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~ 1068 (1107)
.++.|+|.+.+|-+-+.+-+. ..+...||.++|.++-+
T Consensus 876 ~~~~v~ld~~~~~~l~~eg~~---re~~~~iq~~rk~~~~~ 913 (975)
T PRK06039 876 GGGTVALDTELTEELEAEGLA---RELIRRIQEMRKEAGLD 913 (975)
T ss_pred CCEEEEEECCcCHHHHHhhHH---HHHHHHHHHHHHhCCCC
Confidence 578999987766665555555 45667888888887653
No 11
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.5e-168 Score=1604.90 Aligned_cols=790 Identities=24% Similarity=0.391 Sum_probs=692.3
Q ss_pred hcCCCchhHHHHHHHHHHhcCCcccCCC--CCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCC
Q 001289 144 AKEYNPSSVEKSWYSWWENSGYFIADNK--SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 221 (1107)
Q Consensus 144 ~~~y~p~~vE~~w~~~W~~~~~f~~~~~--~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~ 221 (1107)
.+.|||..+|.+|+++|+++++|++..+ .++|+|+|++||||+||.||||||+|++++|+++||+||+||+|+|+|||
T Consensus 5 ~~~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~Gw 84 (1159)
T PLN02882 5 GKDFSFPKQEEKILSLWSEIDAFKTQLKRTEGLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGW 84 (1159)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCcc
Confidence 3569999999999999999999998653 46678999999999999999999999999999999999999999999999
Q ss_pred CccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHH
Q 001289 222 DHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVR 301 (1107)
Q Consensus 222 D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~ 301 (1107)
||||+|||.+||+++....+....++|+++|+++|++|+.+|.+.+++|+++||+|+||+++|+||||.|.++|+|+|.+
T Consensus 85 D~hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~ 164 (1159)
T PLN02882 85 DCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQ 164 (1159)
T ss_pred CCCCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHH
Confidence 99999999999987632212223359999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEeeeeeeecCCCCcccccccc--cccccCCcceeeecCcccccccceEEEEeeecCCCc--ceEEEeecccc
Q 001289 302 LYKEGLIYRDLRLVNWDCVLRTAISDIEV--DYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGL--GEIVVATTRVE 377 (1107)
Q Consensus 302 L~~~GlIyr~~~~V~W~p~~~TaLsd~EV--e~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~--~~i~vaTTrPe 377 (1107)
||++|||||+.++|+|||.|+|+|||+|| +|+++.++ .++++||+.++. .+++|||||||
T Consensus 165 l~~kGliyr~~~~v~wcp~~~TaLs~~E~~~~Yk~~~~~----------------si~v~F~l~~~~~~~~l~iwTTtPw 228 (1159)
T PLN02882 165 LFEKGLVYKGFKVMPYSTACKTPLSNFEAGLNYKDVSDP----------------AVMVSFPIVGDPDNASFVAWTTTPW 228 (1159)
T ss_pred HHHCCCEEecceeEeecCCCCCCcchhhhhhhcccCCCc----------------EEEEEEEecCCCCCcEEEEEeCCcc
Confidence 99999999999999999999999999888 78888754 467899997643 69999999999
Q ss_pred ccccCcEEEEcCCCc------------------ccc-------------------------------cccCcEEecCCC-
Q 001289 378 TMLGDTAIAIHPEDA------------------RYS-------------------------------HLHGKFAIHPFN- 407 (1107)
Q Consensus 378 T~~gdtaiaV~P~d~------------------ry~-------------------------------~l~Gk~~~~P~~- 407 (1107)
|||||+||||||+++ ||. +|+|++|.+||.
T Consensus 229 TLpsn~Al~VnP~~~Y~~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~y~p~~~~ 308 (1159)
T PLN02882 229 TLPSNLALCVNPNFTYVKVRNKYTGKVYIVAESRLSALPTAKPKSKKGSKPENAAEGYEVLAKVPGSSLVGKKYEPLFDY 308 (1159)
T ss_pred ccccCeEEEECCCCcEEEEEecCCCeEEEEhHHHHHHHHhhhhcccccccccccccccEEEEEecchhhcCCEEECCccc
Confidence 999999999999986 221 688999988872
Q ss_pred -----CCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCC-----ccceeeCCCCccccCCCCCCCCCChhhHH
Q 001289 408 -----GRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNL-----EFINIFTDDGKINSNGGLEFEGMPRFKAR 477 (1107)
Q Consensus 408 -----~~~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L-----~~i~iid~dG~~~~~~g~~f~Gl~~~~ar 477 (1107)
++.+|||+|++ |++++|||+||+|||||++||++|++||| +++++||++|+|++++| +|+|+.+++||
T Consensus 309 ~~~~~~~~~~Vi~~~~-V~~~~GTGiVh~aPahG~~Dy~v~~~~gl~~~~~~~~~~vd~~G~~~~~~~-~~~G~~v~eA~ 386 (1159)
T PLN02882 309 FSEFSDTAFRVVADDY-VTDDSGTGVVHCAPAFGEDDYRVCLANGIIEKGGNLPVPVDDDGCFTEKVT-DFSGRYVKDAD 386 (1159)
T ss_pred cccccCceEEEEccCc-cCCCCCcceeEecCCCChhHHHHHHHcCCCccccCccceECCCceEccCCc-ccCCCCHHHhh
Confidence 46899999995 99999999999999999999999999999 79999999999999998 99999999999
Q ss_pred HHHHHHHHHcCCeeceeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEecccc-HHHHHHHh
Q 001289 478 EAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQY-TAEWRRWL 556 (1107)
Q Consensus 478 ~~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~-~~~~~~wl 556 (1107)
+.|++.|+++|++++.+++.|+||+|||||+||++++++||||++++++++++++. ++++|+|++. ++++.+||
T Consensus 387 ~~Ii~~Lk~~g~L~~~~~~~Hsyp~cwR~~tpli~~a~~qWFi~~~~~k~~~l~~~-----~~i~w~P~~~~~~r~~~wl 461 (1159)
T PLN02882 387 KDIIAAIKAKGRLVKSGSITHSYPFCWRSDTPLIYRAVPSWFVKVEEIKDRLLENN-----KQTYWVPDYVKEKRFHNWL 461 (1159)
T ss_pred HHHHHHHHHCCCccceeeeecCCCEeeCCCCEEEEEecceeEEEcHHHHHHHHHhh-----CCcEEECCcchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999977 7899999999 58999999
Q ss_pred ccCCCeeeeecCCCcccceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhh-------------hcCC----CCcc
Q 001289 557 EAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANK-------------KFSG----KKFE 619 (1107)
Q Consensus 557 ~~l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~-------------~~~~----~~~~ 619 (1107)
+|++|||||||||||||||+|+|..+. .+++..+.++..+.... .+|. ....
T Consensus 462 ~~~~DW~ISRqR~WGtPIPvw~~~~~~-----------~~~~~~s~~el~~~~~~~~~dlh~~~id~i~~p~~~~~~~~~ 530 (1159)
T PLN02882 462 ENARDWAVSRSRFWGTPLPIWISDDGE-----------EVVVIGSIAELEKLSGVKVTDLHRHFIDHITIPSSRGPEFGV 530 (1159)
T ss_pred hcCcccceeeccccCCccceEEeCCCC-----------eEEecCcHHHHHHHhCCchhhccccchhhhccccccCCchhc
Confidence 999999999999999999999996432 23443344333222110 0121 1236
Q ss_pred cccCCCceeeEeccCCcccccccCCCC-ChhhhhhCCcCcccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCC
Q 001289 620 MCQDPDVLDTWFSSGLFPLSVLGWPDD-TDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDA 698 (1107)
Q Consensus 620 l~~d~DvlDtWFdSgl~p~s~lgwp~~-~~d~~~~yP~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~ 698 (1107)
++|++||||||||||+||++++|||.+ .++|+.+||+|++++|+||+||||++|+++|+.++|+.||++|++||||+|+
T Consensus 531 ~~r~~dVlD~WFdSg~~p~a~~~~p~e~~~~f~~~~PaD~i~eG~Dq~RgWf~~ll~~s~~l~~~~pfk~VivhG~vlde 610 (1159)
T PLN02882 531 LRRVDDVFDCWFESGSMPYAYIHYPFENKELFEKNFPADFVAEGLDQTRGWFYTLMVLSTALFDKPAFKNLICNGLVLAE 610 (1159)
T ss_pred eEecCceeeeeeccCccHHHHcCCcccChhHhhccCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEEccEEECC
Confidence 999999999999999999999999974 5679999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccC-cccccc
Q 001289 699 HGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTA-QSDKIN 777 (1107)
Q Consensus 699 ~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~-~~~Din 777 (1107)
+|+|||||+||||||.++|+ +||||||||||++... .++|++
T Consensus 611 ~G~KMSKSlGNvIdP~evi~-------------------------------------~YGADaLR~~Ll~s~~~~~~d~~ 653 (1159)
T PLN02882 611 DGKKMSKSLKNYPDPNEVID-------------------------------------KYGADALRLYLINSPVVRAEPLR 653 (1159)
T ss_pred CCCCcccCCCCCCCHHHHHH-------------------------------------HhCcHHHHHHHHhCCcccCcCcc
Confidence 99999999999999999999 8999999999997544 378999
Q ss_pred ccHHHHHHH-HHHHHHHHHHHHHHhhhhCC-------CCCCCCCCCC-CCCChhhHHHHHHHHHHHHHHHHHHhcCCHHH
Q 001289 778 LDIQRVVGY-RQWCNKLWNAVRFSMSKLGE-------GFVPPLKLHP-HNLPFSCKWILSVLNKAISRTASSLNSYEFSD 848 (1107)
Q Consensus 778 f~~~~v~~~-r~f~nKl~N~~rf~l~~l~~-------~~~p~~~~~~-~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~ 848 (1107)
|+.+.+.+. ++|++++||+++|+++++.+ +|.|...... .....+|+||+++++.+++.+.++|++|+|+.
T Consensus 654 fs~~~v~~~~~~~l~kl~Na~rfl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wIls~l~~li~~v~~~me~y~f~~ 733 (1159)
T PLN02882 654 FKEEGVFGVVKDVFLPWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQNSANVLDRWINSATQSLVKFVREEMGAYRLYT 733 (1159)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 999998865 66999999999999887642 3554311111 12467899999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhHHHHHhhcccccCCC-cccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCC
Q 001289 849 AASTVYSWWQYQFCDVFIEAIKPYFAGDN-PAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKE 927 (1107)
Q Consensus 849 a~~~i~~f~~~~l~d~Yie~~K~~l~~~~-~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~ 927 (1107)
|++.|++|+ .++||+||+.+|||++.++ .. .+++++.+|+.+|..+++||||||||+||+|||+|+.... ...+
T Consensus 734 A~~~I~~Fv-~~lsN~YIe~~Kprl~~~~~~~---~~~~al~tL~~vL~~l~~LLaPfmPf~aEeI~q~L~~~~~-~~~~ 808 (1159)
T PLN02882 734 VVPYLVKFI-DNLTNIYVRFNRKRLKGRTGEE---DCRTALSTLYNVLLTSCKVMAPFTPFFTEVLYQNLRKVLP-GSEE 808 (1159)
T ss_pred HHHHHHHHH-HHHhHHHHHhCCHhhhCCCChH---HHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHhccccC-CCCC
Confidence 999999998 4799999999999988653 22 5778999999999999999999999999999999975211 2247
Q ss_pred cceeccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCc--ccEEEEe-cChhHHH-HHHHHHHHHHhhhc
Q 001289 928 SIMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQKNER--LPAIAFC-QTKGVSE-IIRSHELEIVTLST 1003 (1107)
Q Consensus 928 SI~~a~~P~~~~~~~d~~~e~~~e~v~~vi~~iRslr~~~~~k~i~~~--~~~~I~~-~~~~~~~-~l~~~~~~I~~L~~ 1003 (1107)
||+++.||++++.+.|++++..|+.+++++..+|++|++. +++.+ +...+.. .+.+... ++..+.+.|+.++|
T Consensus 809 SVh~~~~P~~~~~~~d~~le~~~~~~~~ii~~~r~~r~~~---~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~i~~e~n 885 (1159)
T PLN02882 809 SIHYCSFPQVDEGELDERIEQSVSRMQTVIELARNIRERH---NKPLKTPLKEMVVVHPDAEFLDDITGKLKEYVLEELN 885 (1159)
T ss_pred ceeecCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHHHc---CCCCCCccceeeEecCCHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999988999999999999999999999999988 76433 4433332 3333333 33688899999999
Q ss_pred cceEEEecc
Q 001289 1004 SSSLKVLLS 1012 (1107)
Q Consensus 1004 v~~v~i~~~ 1012 (1107)
+.+|.+..+
T Consensus 886 v~~v~~~~~ 894 (1159)
T PLN02882 886 VRSLVPCND 894 (1159)
T ss_pred cceEEEeec
Confidence 999987643
No 12
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=6.8e-168 Score=1584.77 Aligned_cols=797 Identities=25% Similarity=0.395 Sum_probs=686.3
Q ss_pred CchhHHHHHHHHHHhcCCcccCCC-CCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccCh
Q 001289 148 NPSSVEKSWYSWWENSGYFIADNK-SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGI 226 (1107)
Q Consensus 148 ~p~~vE~~w~~~W~~~~~f~~~~~-~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi 226 (1107)
+...+|.+|+++|+++++|++... ..+++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+||||||||
T Consensus 4 ~~~~~E~~~~~~W~~~~~y~~~~~~~~~~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGl 83 (974)
T PLN02843 4 NSVTREPEIQKLWEENQVYKRVSDRNNGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGL 83 (974)
T ss_pred ChHHhhHHHHHHHHHCCCccccccccCCCCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCc
Confidence 456799999999999999998754 2346799999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcC
Q 001289 227 ATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEG 306 (1107)
Q Consensus 227 ~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~G 306 (1107)
|||.+||+++.. .+++++++++|+++|++|++++++.|++||++||+++||+++|+||||.|+++|+++|.+|+++|
T Consensus 84 pie~~vek~l~~---~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~G 160 (974)
T PLN02843 84 PIELKVLQSLDQ---EARKELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNG 160 (974)
T ss_pred HHHHHHHHHhch---hhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCC
Confidence 999999988732 26678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEeeeeeeecCCCCcccccccccccccCCcceeeecCcccccccceEEEEeeecCCC-------------cceEEEee
Q 001289 307 LIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGG-------------LGEIVVAT 373 (1107)
Q Consensus 307 lIyr~~~~V~W~p~~~TaLsd~EVe~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~-------------~~~i~vaT 373 (1107)
+|||+.+||+|||+|+|||||+||+|++... +..++++|++.++ +.+|+|||
T Consensus 161 lIyr~~kpV~Wcp~~~Talae~Evey~e~~~---------------~~s~yv~f~~~~~~~~~~~~~~~~~~~~~lviwT 225 (974)
T PLN02843 161 YIYRGRKPVHWSPSSRTALAEAELEYPEGHV---------------SKSIYVAFPVVSPSETSPEELEEFLPGLSLAIWT 225 (974)
T ss_pred CEEecceeeeecCCCCCcchHhHhcccCCcc---------------CceEEEEEEecCCccccccccccccccceEEEEe
Confidence 9999999999999999999999999986321 2356788888643 24899999
Q ss_pred ccccccccCcEEEEcCCCc-------------c-----------------------------------------------
Q 001289 374 TRVETMLGDTAIAIHPEDA-------------R----------------------------------------------- 393 (1107)
Q Consensus 374 TrPeT~~gdtaiaV~P~d~-------------r----------------------------------------------- 393 (1107)
|||||||||+||||||+++ |
T Consensus 226 TtPwTlpan~AiaVnP~~~Y~~v~~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~iva~~l~~~~~~~~~~~~~~~~~~~ 305 (974)
T PLN02843 226 TTPWTMPANAAVAVNDKLQYSVVEVQSFSEDESTSGGNKKKRPGNVLKEQQKLFLIVATDLVPALEAKWGVKLVVLKTFP 305 (974)
T ss_pred CcchhhccCcEEEECCCCceEEEEeccccccccccccccccccccccccccCceEEeHHHHHHHHHHhhCCceEEEeeec
Confidence 9999999999999999955 2
Q ss_pred cccccCcEEecCCCCCccceEe-cCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCC
Q 001289 394 YSHLHGKFAIHPFNGRKIPIIC-DAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMP 472 (1107)
Q Consensus 394 y~~l~Gk~~~~P~~~~~iPIi~-d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~ 472 (1107)
+++|+|+++.|||.++.+|||. ++ ||++++|||+||+|||||++||++|++|||+++++||++|++++++| +|.|+.
T Consensus 306 g~~L~g~~~~~P~~~~~~pii~~~~-~V~~~~GTG~Vh~aPaHg~~Dy~~~~~~~l~~~~~vd~~G~~~~~~~-~~~G~~ 383 (974)
T PLN02843 306 GSDLEGCRYIHPLYNRESPVVIGGD-YITTESGTGLVHTAPGHGQEDYITGLKYGLPLLSPVDDAGKFTEEAG-QFSGLS 383 (974)
T ss_pred hHHcCCCEEECCCCCCceeEEecCC-ccCCCCCCCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEccCCc-ccCCcE
Confidence 2689999999999999999986 56 59999999999999999999999999999999999999999999988 899999
Q ss_pred hh-hHHHHHHHHHHHcCCeeceeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHH
Q 001289 473 RF-KAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAE 551 (1107)
Q Consensus 473 ~~-~ar~~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~ 551 (1107)
++ +||+.|++.|++.|++++.+++.|+||||||||+||++++++||||+|+.+++++++++ ++|+|+|+.++++
T Consensus 384 v~~~a~~~Ii~~L~~~g~l~~~e~~~H~yp~cwR~~~pvi~r~t~QWFi~~~~~k~~al~~~-----~~v~~~P~~~~~r 458 (974)
T PLN02843 384 VLGEGNAAVVEALDEAGSLLMEEAYGHKYPYDWRTKKPTIFRATEQWFASVEGFRQAALDAI-----DKVKWIPAQGENR 458 (974)
T ss_pred ehhcchHHHHHHHHHCCCeeeeeeecCCCCccCCCCCeEEEEecCceeEeCHHHHHHHHHHH-----hccEEEChHHHHH
Confidence 98 89999999999999999999999999999999999999999999999999999999999 5799999999999
Q ss_pred HHHHhccCCCeeeeecCCCcccceeEEEccCcchhhc-----------cCCCCCceEEecCHHHHHHHHhhhcCCCCccc
Q 001289 552 WRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKE-----------LGSYNDHWIVARDEKEALAVANKKFSGKKFEM 620 (1107)
Q Consensus 552 ~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~-----------~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l 620 (1107)
|.+||+|++|||||||||||||||+|||..+++.... .....+.|+.. +.++.. ...+.++...+
T Consensus 459 ~~~~i~~~~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~-~~~~l~---p~~~~~~~~~~ 534 (974)
T PLN02843 459 IRAMVSGRSDWCISRQRTWGVPIPVFYHVETKEPLMNEETIAHVKSIVAQKGSDAWWYM-DVEDLL---PEKYRDKASDY 534 (974)
T ss_pred HHHHHhcCcceeeeeccccccEEEEEEEcCCCCEeechhhHHHHHHHHHhhCCcccccC-CHHHhC---cccccCchhhh
Confidence 9999999999999999999999999999766532100 01122345432 222221 11121223468
Q ss_pred ccCCCceeeEeccCCcccccccCCCCChhhhhhCCcCcccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCC
Q 001289 621 CQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHG 700 (1107)
Q Consensus 621 ~~d~DvlDtWFdSgl~p~s~lgwp~~~~d~~~~yP~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G 700 (1107)
+|++||||||||||+++...+++. .+.+||+|++++|+||+||||++|++.++.++|+.||++|++||+|+|.+|
T Consensus 535 ~k~~DvlDvWFdSg~~~~~~~~~~-----~~~~~PaDl~~eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~HG~vld~~G 609 (974)
T PLN02843 535 EKGTDTMDVWFDSGSSWAGVLGSR-----EGLSYPADLYLEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTHGFVLDEKG 609 (974)
T ss_pred EecccccccchhcCCChHHHhccc-----cccCCCceeeeeeccccchHHHHHHHHHHHhcCCCccceEEEeccEECCCC
Confidence 999999999999999887766532 134799999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccH
Q 001289 701 RKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDI 780 (1107)
Q Consensus 701 ~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~ 780 (1107)
+|||||+||||+|.++|+|++++ +++|+||+|+|||||++ +..+.|++|+.
T Consensus 610 ~KMSKSlGNvI~p~~vi~~~~~~----------------------------~~~~~yGaD~lR~~l~~-~~~~~d~~~s~ 660 (974)
T PLN02843 610 FKMSKSLGNVVDPRLVIEGGKNQ----------------------------KQEPAYGADVLRLWVAS-VDYTGDVLIGP 660 (974)
T ss_pred CCcCCCCCCcCCHHHHHhhcccc----------------------------ccccccChHHHHHHHHh-cccCCCceeCH
Confidence 99999999999999999975322 46889999999999996 55678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 001289 781 QRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQ 860 (1107)
Q Consensus 781 ~~v~~~r~f~nKl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~ 860 (1107)
+.+.+.+++++||||++||+++++.+ |.|........++.+|+||+++|+++++.+.++|++|+|+.|++.|++|++.+
T Consensus 661 ~~l~~~~~~~~kl~n~~rf~lgnl~~-~~~~~~~~~~~~~~~D~wiLskL~~li~~v~~aye~y~f~~A~~~i~~f~~~d 739 (974)
T PLN02843 661 QILKQMSDIYRKLRGTLRYLLGNLHD-WKPDNAVPYEDLPSIDKYALFQLENVVNEIEESYDNYQFFKIFQILQRFTIVD 739 (974)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccC-CCcccccCccccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999864 65522222234567899999999999999999999999999999999999999
Q ss_pred HhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCcceeccCCCCCCC
Q 001289 861 FCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEG 940 (1107)
Q Consensus 861 l~d~Yie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~a~~P~~~~~ 940 (1107)
+||+||+.+|||++.+... +..+++++.+|+.+++.+++||||||||+|||||++|+...+....+||+++.||+.++.
T Consensus 740 lsn~Yie~~Kprly~~~~~-~~~r~~~qtvL~~iLe~l~~LLaPimPf~aEEiw~~L~~~~~~~~~~sv~~~~~P~~~~~ 818 (974)
T PLN02843 740 LSNFYLDVAKDRLYVGGTT-SFTRRSCQTVLAAHLLSLLRAIAPILPHLAEDAWQNLPFQEDGSAAESVFEAGWPTPNEE 818 (974)
T ss_pred HhHHHHHhcchhhhccCCC-HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccccccCCCCCceEecCCCCCchh
Confidence 9999999999998765211 115778899999999999999999999999999999985311012469999999998877
Q ss_pred CCc--HHHHH----HHHHHHHHHHHHHHHHHHhhccCCCCc--ccEEEEecChhHHHHHHH------HHHHHHhhhccce
Q 001289 941 WTD--ERAEF----EMDLVESTVRCIRSLRAEVLGKQKNER--LPAIAFCQTKGVSEIIRS------HELEIVTLSTSSS 1006 (1107)
Q Consensus 941 ~~d--~~~e~----~~e~v~~vi~~iRslr~~~~~k~i~~~--~~~~I~~~~~~~~~~l~~------~~~~I~~L~~v~~ 1006 (1107)
+.+ +..+. .+++..++++++|++|++. .|+.+ ..++|.+.+.+..+.++. +.+.|+.|+++++
T Consensus 819 ~~~~~~~~~~~~~~~~~~r~~v~~~l~~~r~~~---~i~~~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~vs~ 895 (974)
T PLN02843 819 WLSFPAEDVDFWSLLLEVRDEVNKVLESARNGK---LIGASLEAKVYLHASDASLAARLAELCGASNGADELRRIFITSQ 895 (974)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCcccceeEEEEeCCHHHHHHHHhhccccchHHHHHHHhccCc
Confidence 765 34433 3455556889999999987 78544 445555545445566666 3477999999999
Q ss_pred EEEecc
Q 001289 1007 LKVLLS 1012 (1107)
Q Consensus 1007 v~i~~~ 1012 (1107)
|+++..
T Consensus 896 v~~~~~ 901 (974)
T PLN02843 896 VEVVSS 901 (974)
T ss_pred eEeecC
Confidence 999743
No 13
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.2e-168 Score=1583.59 Aligned_cols=788 Identities=28% Similarity=0.446 Sum_probs=700.7
Q ss_pred CccCCCCCcccccccchhhhcCCCchhHHHHHHHHHHhcCCcccCC--CCCCCcEEEECCCCCCCCCCCchhhHHhHHHH
Q 001289 125 EFVDPETPLGEKKRMSKQMAKEYNPSSVEKSWYSWWENSGYFIADN--KSSKPSFVIVLPPPNVTGALHIGHALTTAIQD 202 (1107)
Q Consensus 125 ~~~~~~t~~~~k~~~~~~~~~~y~p~~vE~~w~~~W~~~~~f~~~~--~~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D 202 (1107)
+.++|+|.|++| ||+..+|.+|+++|+++++|++.. +.++++|+|++|||||||.||||||+|++++|
T Consensus 7 tl~lp~t~f~m~----------~~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPyanG~lHiGHa~~~~~~D 76 (912)
T PRK05743 7 TLNLPKTDFPMR----------ANLPKREPEILKRWEENDLYQKIREANKGKPKFILHDGPPYANGDIHIGHALNKILKD 76 (912)
T ss_pred hcCCCCCCCCCC----------CChHHhhHHHHHHHHHCCCccccchhcCCCCcEEEeCCCCCCCCCccHHHHHHHHHHH
Confidence 678999999877 666789999999999999999754 24678899999999999999999999999999
Q ss_pred HHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCC
Q 001289 203 TIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSR 282 (1107)
Q Consensus 203 ~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r 282 (1107)
+++||+||+||+|+|+|||||||+|||.+||+++ |..++++++++|++.|++|++++++.|++||++||+++||++
T Consensus 77 ii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l----~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~ 152 (912)
T PRK05743 77 IIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKL----GKKGKKLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDN 152 (912)
T ss_pred HHHHHHHccCCcccCCCCcCCCccHhHHHHHHHc----CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCC
Confidence 9999999999999999999999999999999875 556788999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCcccccccccccccCCcceeeecCcccccccceEEEEeeec
Q 001289 283 ECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPL 362 (1107)
Q Consensus 283 ~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l 362 (1107)
+|+||||.|+++|+++|.+|+++|+|||+.++|+|||.|+|+|||+||+|++..+ ..++++|++
T Consensus 153 ~~~T~~~~~~~~v~~~f~~l~~~Gliy~~~~~v~w~p~~~TaLad~Evey~~~~s----------------~~~yv~f~l 216 (912)
T PRK05743 153 PYLTMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHDKTS----------------PSIYVAFPV 216 (912)
T ss_pred CcCCCCHHHHHHHHHHHHHHHHCCCEEecceeEecCCCcCCCchhhHhhcccccC----------------ceEEEEEEe
Confidence 9999999999999999999999999999999999999999999999999987654 456789998
Q ss_pred CCC-------cceEEEeeccccccccCcEEEEcCCCc---------cc---------------------------ccccC
Q 001289 363 EGG-------LGEIVVATTRVETMLGDTAIAIHPEDA---------RY---------------------------SHLHG 399 (1107)
Q Consensus 363 ~~~-------~~~i~vaTTrPeT~~gdtaiaV~P~d~---------ry---------------------------~~l~G 399 (1107)
.++ +.+|+|||||||||+||+||||||+++ +| ++|+|
T Consensus 217 ~~~~~~~~~~~~~l~i~TTrP~Tl~~n~aiav~p~~~Y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~G~~l~g 296 (912)
T PRK05743 217 VDGKLAAAFKDASLVIWTTTPWTLPANQAIAVHPEFDYVLVEVEGEKLIVAKDLVESVLERFGWEDYEVLATFKGKELEG 296 (912)
T ss_pred cCcchhcccCCCEEEEEeCCChhhhhCeEEEECCCCeeEEEEcCCCEEEEeHHhHHHHHHhhCCcceEEEEEechHhhcC
Confidence 663 378999999999999999999999994 77 47999
Q ss_pred cEEecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHH
Q 001289 400 KFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREA 479 (1107)
Q Consensus 400 k~~~~P~~~~~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~ 479 (1107)
+++.|||.++.+|||.+++ |++++|||+||+|||||++||++|++|||+++++||++|+|++++| +|.|+++++||++
T Consensus 297 ~~~~~Pl~~~~~pvi~~~~-V~~~~GTG~Vh~aPahg~~Dy~~~~~~~L~~~~~vd~~G~~~~~~~-~~~Gl~v~ea~~~ 374 (912)
T PRK05743 297 LVAQHPFYDRDSPVILGDH-VTLDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDDGRYTEEAP-LFAGLFVFKANPK 374 (912)
T ss_pred CEEECCCCCCeeeEeCCCc-cCCCCCcCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCc-ccCCcCHHHhHHH
Confidence 9999999999999999995 9999999999999999999999999999999999999999999888 9999999999999
Q ss_pred HHHHHHHcCCeeceeccccccceeccCCCeeEecccccccccccH--HHHHHHHhhhccCCCceEEeccccHHHHHHHhc
Q 001289 480 VNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNS--MAMEALYAVMDDDKKKLELIPRQYTAEWRRWLE 557 (1107)
Q Consensus 480 vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~--~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~ 557 (1107)
|++.|+++|++++.+++.|+||+|||||++|++++++|||++|++ +++++++++ .+++|+|+.+++++.+||+
T Consensus 375 Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k~~~l~~~-----~~v~~~P~~~~~r~~~~i~ 449 (912)
T PRK05743 375 IIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAI-----EKVKWIPAWGKNRIESMVE 449 (912)
T ss_pred HHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecCcccEeCChHHHHHHHHHHH-----cccEEEChHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998 999999999 4799999999999999999
Q ss_pred cCCCeeeeecCCCcccceeEEEccCcchhhc-c----------CCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCc
Q 001289 558 AIRDWCVSRQLWWGHQIPAWYVTLEDDELKE-L----------GSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDV 626 (1107)
Q Consensus 558 ~l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~-~----------~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~Dv 626 (1107)
+++|||||||||||||||+|||..|++.... . ....+.|+... ....+|.+...+.|++||
T Consensus 450 ~~~DWcISRQR~WG~PIP~~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~--------~~~~~~~~~~~~~~~~Dv 521 (912)
T PRK05743 450 NRPDWCISRQRTWGVPIPIFYHKETGELHPTPELIEHVAKLFEKEGIDAWFELD--------AKELLPDEADEYEKETDI 521 (912)
T ss_pred cCcCccccccceeCceEEEEEECCCCcEeecHHHHHHHHHHHHhhCCccccccC--------HHHhcCCcccCEEECCch
Confidence 9999999999999999999999876432100 0 01123454322 111244334468999999
Q ss_pred eeeEeccCCcccccccCCCCChhhhhhCCcCcccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCcccccc
Q 001289 627 LDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKS 706 (1107)
Q Consensus 627 lDtWFdSgl~p~s~lgwp~~~~d~~~~yP~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS 706 (1107)
||||||||++|++.+++- . +.+||+|++++|+||+||||++|++.++.++|..||++|++||||+|.+|+|||||
T Consensus 522 lDvWfdSg~s~~~~~~~~---~--~~~~P~Dl~~~G~Di~r~Wf~~~l~~~~~~~g~~P~k~vl~HG~vld~~G~KMSKS 596 (912)
T PRK05743 522 LDVWFDSGSSHAAVLEQR---P--ELGYPADLYLEGSDQHRGWFQSSLLTSVATRGKAPYKQVLTHGFTVDGKGRKMSKS 596 (912)
T ss_pred hhhhhhhCCCHHHHhcCc---c--ccCCCceEEEecccccchHHHHHHHHHHHhcCCCccceeEEeeeEECCCCCCCCCC
Confidence 999999999999998851 2 26899999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHHH
Q 001289 707 LGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGY 786 (1107)
Q Consensus 707 lGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~ 786 (1107)
+||||||.++|+ +||||+|||||++ ++.++|++|+.+.+.+.
T Consensus 597 lGNvIdP~~ii~-------------------------------------~yGaDalR~~ll~-~~~~~D~~~s~~~l~~~ 638 (912)
T PRK05743 597 LGNVIDPQDVIK-------------------------------------KYGADILRLWVAS-TDYSGDVRISDEILKQV 638 (912)
T ss_pred CCCcCCHHHHHH-------------------------------------hcChHHHHHHHHh-cCCCCCeeecHHHHHHH
Confidence 999999999998 8999999999997 77899999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhCCCCCCCCC-CCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHH
Q 001289 787 RQWCNKLWNAVRFSMSKLGEGFVPPLK-LHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVF 865 (1107)
Q Consensus 787 r~f~nKl~N~~rf~l~~l~~~~~p~~~-~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Y 865 (1107)
+++++||||++||+++++.+ |.|... ++...+...|+||+++|+++++.++++|++|+|+.|++.|++|+++++||+|
T Consensus 639 ~~~~~kl~N~~rf~~~nl~~-~~~~~~~~~~~~l~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~l~~f~~~~ls~~Y 717 (912)
T PRK05743 639 AEAYRRIRNTLRFLLGNLND-FDPAKDAVPYEELLELDRWALHRLAELQEEILEAYENYDFHKVYQKLHNFCSVDLSAFY 717 (912)
T ss_pred HHHHHHHHHHHHHHHhCccC-CCcccccCCchhCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhceee
Confidence 99999999999999988754 544211 1122456789999999999999999999999999999999999999999999
Q ss_pred HHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCcceeccCCCCCCCCCcHH
Q 001289 866 IEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWTDER 945 (1107)
Q Consensus 866 ie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~a~~P~~~~~~~d~~ 945 (1107)
|+.+|++++..... ...+++++.+|+.+++.+++||||||||+|||||++|+. ...+||+++.||+.++.+.|+.
T Consensus 718 ie~~K~rly~~~~~-~~~r~~~~~vL~~~l~~l~~lLaPi~P~~aEelw~~l~~----~~~~sv~~~~wP~~~~~~~~~~ 792 (912)
T PRK05743 718 LDIIKDRLYTDAAD-SLARRSAQTALYHILEALVRWLAPILSFTAEEIWQYLPG----EREESVFLEEWPEVPELADDEE 792 (912)
T ss_pred heeccHhhhcCCCC-cHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhccc----CCCCceEEecCCCCccccCCHH
Confidence 99999998765211 115778899999999999999999999999999999973 1236999999999998888999
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHhhccCCCCcccEEEEecChhHHHHHHHHHHHHHhhhccceEEEec
Q 001289 946 AEFEMDLVES----TVRCIRSLRAEVLGKQKNERLPAIAFCQTKGVSEIIRSHELEIVTLSTSSSLKVLL 1011 (1107)
Q Consensus 946 ~e~~~e~v~~----vi~~iRslr~~~~~k~i~~~~~~~I~~~~~~~~~~l~~~~~~I~~L~~v~~v~i~~ 1011 (1107)
++..++.+++ +++.+|..|++. .|+...++.+...... +.+..+.+.|..|++|++|++..
T Consensus 793 ~~~~~~~~~~~r~~v~~~i~~~r~~~---~i~~~~~~~~~~~~~~--~~l~~~~~~l~~~~~vs~v~~~~ 857 (912)
T PRK05743 793 LLAKWEELLEVRDEVNKALEEARKEK---VIGSSLEAEVTLYADA--ALLESLGDELRFLLIVSQVEVAD 857 (912)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc---CCCcccceEEEEEcCH--HHHHHHHHHHHHHhhhCceEEec
Confidence 9999999985 788888888887 7765555443332222 56777778899999999999864
No 14
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.1e-167 Score=1566.41 Aligned_cols=782 Identities=32% Similarity=0.568 Sum_probs=703.6
Q ss_pred hhhcCCCchhHHHHHHHHHHhcCCcccCCCCCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCC
Q 001289 142 QMAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 221 (1107)
Q Consensus 142 ~~~~~y~p~~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~ 221 (1107)
++++.|||+++|++||++|+++++|+++.+.++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|||
T Consensus 5 ~~~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~ 84 (800)
T PRK13208 5 ELPKKYDPEELEEKWQKIWEEEGTYKFDPDERKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGW 84 (800)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCcccccccCCCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCc
Confidence 46778999999999999999999999987555789999999999999999999999999999999999999999999999
Q ss_pred CccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHH
Q 001289 222 DHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVR 301 (1107)
Q Consensus 222 D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~ 301 (1107)
||||+|||.+||+++ |++++++|+++|++.|++|++++++.|++||++||+|+||+|+++||||.|+++|+|+|.+
T Consensus 85 D~~Glpie~~~ek~~----g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~ 160 (800)
T PRK13208 85 DDNGLPTERKVEKYY----GIRKDDISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLD 160 (800)
T ss_pred CCCcchHHHHHHHHh----CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHH
Confidence 999999999999754 8889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEeeeeeeecCCCCcccccccccccccCCcceeeecCcccccccceEEEEeeecCCCcceEEEeecccccccc
Q 001289 302 LYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLG 381 (1107)
Q Consensus 302 L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~g 381 (1107)
||++|+|||+.++|||||.|+|+|||+||+|++.. |.+++++|++.+ +.+|+|||||||||+|
T Consensus 161 L~~~Gliy~~~~~v~wcp~~~t~Lsd~ev~~~~~~----------------~~~~~ikf~~~~-~~~l~v~TtrPeTl~g 223 (800)
T PRK13208 161 LYKKGLIYRAEAPVLWCPRCETAIAQAEVEYRERE----------------GKLNYIKFPVED-GEEIEIATTRPELLPA 223 (800)
T ss_pred HHHCCCeeecCcccccCCCCCCccchhhhcccccc----------------ceEEEEEEEecC-CCEEEEEeCCcchhhh
Confidence 99999999999999999999999999999988765 457889999975 4689999999999999
Q ss_pred CcEEEEcCCCcccccccCcEEecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccc
Q 001289 382 DTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKIN 461 (1107)
Q Consensus 382 dtaiaV~P~d~ry~~l~Gk~~~~P~~~~~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~ 461 (1107)
|+||||||+|+||++|+|+++.||++++++|||++++ |++++|||+||+||+||++||++|++|||+++++||++|+|+
T Consensus 224 ~~ai~v~p~~~~~~~l~g~~~~~P~~~~~ipii~~~~-V~~~~GTG~V~~~p~hd~~D~~~~~~~~l~~~~~i~~~G~~~ 302 (800)
T PRK13208 224 CVAVVVHPDDERYKHLVGKTAIVPLFGVEVPILADPL-VDPDFGTGAVMICTFGDKTDVTWWRELNLPTRIIIDEDGRMT 302 (800)
T ss_pred CeEEEECCCchHHHHhcCCEEEcCCCCCcceEECCCc-cCCCCCcceEEeCCCCCHHHHHHHHHcCCCcccccCCCceEe
Confidence 9999999999999999999999999999999999995 999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCChhhHHHHHHHHHHHcCCeeceeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCce
Q 001289 462 SNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKL 541 (1107)
Q Consensus 462 ~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i 541 (1107)
+++| +|+||++++||++|++.|+++|++.+.+++.|++|+|||||++|++++++||||+++++++++++++ +++
T Consensus 303 ~~~g-~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwfl~~~~~~~~~~~~~-----~~~ 376 (800)
T PRK13208 303 EAAG-KLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILVTRQWFIKVLDLKEELLERG-----KEI 376 (800)
T ss_pred cCCc-ccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccCCccCCCCCEEEEeccceeeEeCHHHHHHHHHhh-----cCc
Confidence 9999 9999999999999999999999999999999999999999999999999999999999999999999 568
Q ss_pred EEeccccHHHHHHHhccCC-CeeeeecCCCcccceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCC-cc
Q 001289 542 ELIPRQYTAEWRRWLEAIR-DWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKK-FE 619 (1107)
Q Consensus 542 ~~~P~~~~~~~~~wl~~l~-DWcISRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~-~~ 619 (1107)
+|+|++.++++.+||+|++ |||||||||||||||+|+|..|+.... .. ..|..-....++.. ...|+.++ ..
T Consensus 377 ~~~P~~~~~~~~~~l~~~~~DW~ISRqr~WG~pIP~~~~~~~g~~~~---~~-~~~l~~~~~~d~~~--~~~~~~~g~~~ 450 (800)
T PRK13208 377 NWYPEHMRVRLENWIEGLNWDWCISRQRYFGTPIPVWYCKDCGHPIL---PD-EEDLPVDPTKDEPP--GYKCPQCGSPG 450 (800)
T ss_pred EEECHHHHHHHHHHHHhcCCCceeeeccccCCcceEEEeCCCCCeec---Cc-hhhhccCchhhccc--cccccccCCcC
Confidence 9999999999999999998 999999999999999999987642100 00 01110000001100 01222221 35
Q ss_pred cccCCCceeeEeccCCcccccccCCCCChhhhhhCCcCcccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCC
Q 001289 620 MCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAH 699 (1107)
Q Consensus 620 l~~d~DvlDtWFdSgl~p~s~lgwp~~~~d~~~~yP~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~ 699 (1107)
++|++||||||||||++|++++|||.++.+|++|||+|++++|+||++||+++|++++..++|..||++|++||+|+|.+
T Consensus 451 ~~~~~dvlD~WfdS~~~~~~~~~~~~~~~~~~~~~P~d~~~~G~Di~~~w~~~~l~~~~~~~~~~Pf~~v~~hg~v~~~~ 530 (800)
T PRK13208 451 FEGETDVMDTWATSSITPLIVTGWERDEDLFEKVFPMDLRPQGHDIIRTWLFYTILRAYLLTGKLPWKNIMISGMVLDPD 530 (800)
T ss_pred EEecCCEEEEEEeCCchHHHHhCCCCChhhhhhcCCceEEEeecchhhhHHHHHHHHHHHhcCCCCcceEEEeeEEECCC
Confidence 88999999999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccc
Q 001289 700 GRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLD 779 (1107)
Q Consensus 700 G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~ 779 (1107)
|+|||||+||||+|.++|+ +||+|++||||+ .++.++|++|+
T Consensus 531 G~KMSKS~GN~i~p~~~i~-------------------------------------~yg~D~lR~~l~-~~~~~~d~~fs 572 (800)
T PRK13208 531 GKKMSKSKGNVVTPEELLE-------------------------------------KYGADAVRYWAA-SARLGSDTPFD 572 (800)
T ss_pred CCCCCCCCCCCCCHHHHHH-------------------------------------HcCccHHHHHHh-cCCCCCCceec
Confidence 9999999999999999998 899999999999 78889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 001289 780 IQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQY 859 (1107)
Q Consensus 780 ~~~v~~~r~f~nKl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~ 859 (1107)
.+.+.+.++|+|||||+++|++. +.+.... .........|+||+++|+.+++.+.++|++|+|+.|++.+++|+++
T Consensus 573 ~~~~~~~~~~l~kl~N~~r~~~~-~~~~~~~---~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~A~~~i~~f~~~ 648 (800)
T PRK13208 573 EKQVKIGRRLLTKLWNASRFVLH-FSADPEP---DKAEVLEPLDRWILAKLAKVVEKATEALENYDFAKALEEIESFFWH 648 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-ccccccc---CccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 99999999999999999999873 3221101 0112356789999999999999999999999999999999999988
Q ss_pred hHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCcceeccCCCCCC
Q 001289 860 QFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVE 939 (1107)
Q Consensus 860 ~l~d~Yie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~a~~P~~~~ 939 (1107)
++||+||+.+|++++.++.. ..+.+++.+|+.+++.+++||||||||+|||||++|+. +||+.++||++++
T Consensus 649 ~~~n~Yie~~k~~~~~~~~~--~~~~~~~~~l~~~l~~l~~LLaPf~P~iaEelw~~L~~-------~si~~~~wP~~~~ 719 (800)
T PRK13208 649 VFCDDYLELVKSRAYGEDEE--EEQKSARYTLYTVLDTLLRLLAPFLPFITEEVWSWLYG-------GSVHRASWPEPDE 719 (800)
T ss_pred HhhHHHHHHhhHHhcCCCCc--HHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhCCC-------CceEeccCCCCCc
Confidence 99999999999998755332 12567889999999999999999999999999999971 4899999999988
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc--EEEEecChhHHHHHHHHHHHHHhhhccceEEEecc
Q 001289 940 GWTDERAEFEMDLVESTVRCIRSLRAEVLGKQKNERLP--AIAFCQTKGVSEIIRSHELEIVTLSTSSSLKVLLS 1012 (1107)
Q Consensus 940 ~~~d~~~e~~~e~v~~vi~~iRslr~~~~~k~i~~~~~--~~I~~~~~~~~~~l~~~~~~I~~L~~v~~v~i~~~ 1012 (1107)
.+.++.++..++.++++++.+|++|+++ +++.+.+ +.+...+.+ .+.++.+.+.|+.|+++++|.++..
T Consensus 720 ~~~~~~~~~~~~~v~~ii~~iR~~r~~~---~i~~~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~v~~~~~ 790 (800)
T PRK13208 720 ELIDEEDEELGELAKEILSAVRKYKSEA---GLSLNAPLKKVEVYGPAD-LELLEAAEEDLKAAGNIEELELVEG 790 (800)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHc---CCCcCCccceEEEecchH-HHHHHHHHHHHHHHhCcCeEEEecC
Confidence 7888889999999999999999999998 8854444 343344444 7788999999999999999998754
No 15
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.9e-167 Score=1576.10 Aligned_cols=790 Identities=25% Similarity=0.405 Sum_probs=694.6
Q ss_pred CccCCCCCcccccccchhhhcCCCchhHHHHHHHHHHhcCCcccCCC--CCCCcEEEECCCCCCCCCCCchhhHHhHHHH
Q 001289 125 EFVDPETPLGEKKRMSKQMAKEYNPSSVEKSWYSWWENSGYFIADNK--SSKPSFVIVLPPPNVTGALHIGHALTTAIQD 202 (1107)
Q Consensus 125 ~~~~~~t~~~~k~~~~~~~~~~y~p~~vE~~w~~~W~~~~~f~~~~~--~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D 202 (1107)
+.++|+|.|++| +|+..+|.+|+++|+++++|++..+ .++++|+|++|||||||.||||||+|++++|
T Consensus 12 tl~lp~t~f~m~----------~~~~~~E~~~~~~W~~~~~y~~~~~~~~~~~~f~l~dgPPyanG~lHiGHaln~~lkD 81 (961)
T PRK13804 12 TLNLPQTAFPMR----------AGLPQKEPEIQARWEEIDLYKKLREQAKGRPKFVLHDGPPYANGNIHIGHALNKILKD 81 (961)
T ss_pred hcCCCCCCCCCC----------CChHHhHHHHHHHHHHCCCccccccccCCCCcEEEeCCCCCCCCCccHHHHHHHHHHH
Confidence 678999999988 4556799999999999999998653 4678999999999999999999999999999
Q ss_pred HHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCC
Q 001289 203 TIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSR 282 (1107)
Q Consensus 203 ~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r 282 (1107)
+++||+||+||+|+|+|||||||||||.+||+++ ..+|++++++++++|+++|++|+.++++.+++||++||+++||+|
T Consensus 82 ii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~-~~~~~~~~~~~~~~f~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~ 160 (961)
T PRK13804 82 VIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKY-RAKGKNKDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWDN 160 (961)
T ss_pred HHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhh-hhcCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCC
Confidence 9999999999999999999999999999999887 446788899999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCcccccccccccccCCcceeeecCcccccccceEEEEeeec
Q 001289 283 ECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPL 362 (1107)
Q Consensus 283 ~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l 362 (1107)
+|+||||.|+++|+|+|.+|+++|||||+.+||||||.|+|||||+||+|++..+ ..++++|++
T Consensus 161 ~y~T~d~~y~~~~~~~F~~l~~kGliyr~~kpV~Wcp~~~TaLa~~Evey~~~~s----------------~~~~v~F~~ 224 (961)
T PRK13804 161 PYTTMDFHAEARIAREFGKFAAKGQLYRGSKPVMWSVVERTALAEAEIEYHDIES----------------DTIWVKFPV 224 (961)
T ss_pred CcCcCCHHHHHHHHHHHHHHHHCCCEEeCCcceecCCCCCCCccchhcccccccC----------------ceEEEEEEe
Confidence 9999999999999999999999999999999999999999999999999998764 346788998
Q ss_pred CCC------cceEEEeeccccccccCcEEEEcCCCc-------------------c-------------------cc---
Q 001289 363 EGG------LGEIVVATTRVETMLGDTAIAIHPEDA-------------------R-------------------YS--- 395 (1107)
Q Consensus 363 ~~~------~~~i~vaTTrPeT~~gdtaiaV~P~d~-------------------r-------------------y~--- 395 (1107)
.++ +.+++|||||||||+||+||||||+++ + |+
T Consensus 225 ~~~~~~~~~~~~lviwTTtPwTl~an~aiav~p~~~Y~~v~~~~~~~~~~~~~~e~~iva~~~~~~~~~~~~~~~~~~~~ 304 (961)
T PRK13804 225 KDGKGILDSGTYVVIWTTTPWTIPANRAISYSPDIEYGLYEVTGAENDFWAKPGERLVVADALAESVAKKAGVESFERLA 304 (961)
T ss_pred cCcccccCCCCeEEEEeCCchhhhhCeEEEECCCCceEEEEeccccccccccCCcEEEeHHHHHHHHHHHhCCCCcEEEE
Confidence 642 468999999999999999999999973 4 33
Q ss_pred -----cccCcEEecCCCCC-----ccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCC-ccceeeCCCCccccCC
Q 001289 396 -----HLHGKFAIHPFNGR-----KIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNL-EFINIFTDDGKINSNG 464 (1107)
Q Consensus 396 -----~l~Gk~~~~P~~~~-----~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L-~~i~iid~dG~~~~~~ 464 (1107)
+|+|+++.|||.++ .+|||.+++ |++++|||+||+|||||++||++|++||| +++++||++|+|++++
T Consensus 305 ~~~g~~L~g~~~~~P~~~~~~~~~~~pvi~~~~-V~~~~GTG~Vh~aPahg~~Dy~~~~~~~l~~~~~~vd~~G~~~~~~ 383 (961)
T PRK13804 305 DVKGEDLEKIVCAHPLDGLDGYEFEVPVLDGDH-VTDDAGTGFVHTAPGHGREDFNVWMKYGRTEIPVTVDEDGFYTENA 383 (961)
T ss_pred EEEhhhccCCEEECCCCCcccccceeEEEecCc-cCCCCCCceEEeCCCCCHHHHHHHHHcCCCcccccCCCCeEEccCC
Confidence 79999999999999 899999995 99999999999999999999999999999 9999999999999988
Q ss_pred CCC--------CCCCChhhHHHHHHHHHHHcCCeeceeccccccceeccCCCeeEecccccccccccH-------HHHHH
Q 001289 465 GLE--------FEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNS-------MAMEA 529 (1107)
Q Consensus 465 g~~--------f~Gl~~~~ar~~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~-------~~~~a 529 (1107)
| + |.|+.+++||+.|++.|++.|++++.+++.|+||+|||||++|++++++||||+|++ ++++|
T Consensus 384 ~-~~~g~~v~~~~G~~~~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pii~r~t~QWFi~~~~~~~~~~~~k~~a 462 (961)
T PRK13804 384 P-GFGGARVIDDEGKKYGDANKAVIEKLIEAGLLLARGRLKHSYPHSWRSKKPVIFRNTPQWFISMDKDLGDGTTLRSRA 462 (961)
T ss_pred C-ccccccccccCCcchhhhhHHHHHHHHhCCCcccccceecCCCccCCCCCeEEEeccccccEEcCCcccchHHHHHHH
Confidence 7 6 899999999999999999999999999999999999999999999999999999998 99999
Q ss_pred HHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeecCCCcccceeEEEccCcchhhcc-----------CCCCCceEE
Q 001289 530 LYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKEL-----------GSYNDHWIV 598 (1107)
Q Consensus 530 ~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~~-----------~~~~~~w~~ 598 (1107)
++++ .+++|+|+.+++++.+||++++|||||||||||||||+|||.. ++...+. ....+.|+.
T Consensus 463 l~~i-----~~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~w~~ 536 (961)
T PRK13804 463 LDAI-----DKTRFVPAAGQNRLYNMIEDRPDWVISRQRAWGVPIPIFVAED-GEILMDEEVNARIADAFEEEGADAWFA 536 (961)
T ss_pred HHHH-----hccEEECHHHHHHHHHHHhcCccceeeeeccCCceeeEEEcCC-CCEeccHHHHHHHHHHHHhcCCccccc
Confidence 9999 6899999999999999999999999999999999999999953 2211000 012234442
Q ss_pred ecCHHHHHHHHhhhcCC---CCcccccCCCceeeEeccCCcccccccCCCCChhhhhhCCcCcccccccccchHHHHHHH
Q 001289 599 ARDEKEALAVANKKFSG---KKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVM 675 (1107)
Q Consensus 599 ~~~~~ea~~~~~~~~~~---~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~~~~d~~~~yP~dl~~tG~Dil~fW~armi~ 675 (1107)
. ... ..++. +...++|++||||||||||++++..+++ +.++ +||+|++++|+||+||||++|++
T Consensus 537 ~-~~~-------~~~~~~~~~~~~~~r~~DvlDvWFdSg~s~~~~~~~---~~~~--~~PaD~~~eG~Di~rgWF~s~ll 603 (961)
T PRK13804 537 E-GAK-------ERFLGGFHPNGEFTKVTDILDVWFDSGSTHAFVLED---RPDL--KWPADLYLEGSDQHRGWFNSSLL 603 (961)
T ss_pred c-CHH-------HhcCcccCcccceEecCcceeeeecCCCCccccccC---Cccc--CCCceEEEEEcccccHHHHHHHH
Confidence 1 111 11222 2346999999999999999988766543 3344 58999999999999999999999
Q ss_pred HHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCC
Q 001289 676 LGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIP 755 (1107)
Q Consensus 676 ~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~ 755 (1107)
+++.++|..||++|++||+|+|.+|+|||||+||||||.++|+
T Consensus 604 ~s~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNvIdP~~ii~------------------------------------- 646 (961)
T PRK13804 604 ESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIK------------------------------------- 646 (961)
T ss_pred HHHHhcCCCChhhEEEeccEECCCCCCccCCCCCcCCHHHHHH-------------------------------------
Confidence 9999999999999999999999999999999999999999998
Q ss_pred CCCchHHHHHHHhccCccccccccHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCC-CCCCCCChhhHHHHHHHHHHH
Q 001289 756 ECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLK-LHPHNLPFSCKWILSVLNKAI 834 (1107)
Q Consensus 756 ~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r~f~nKl~N~~rf~l~~l~~~~~p~~~-~~~~~~~~~D~wil~~L~~~~ 834 (1107)
+||+|+|||||++ +..++|++|+.+.+.+.+.++++|||++||+++++.+ |.+... .....+...|+||+++|++++
T Consensus 647 ~yGaD~lRl~lls-~~~~~D~~fs~~~l~~~~~~~~kL~N~~rf~l~nl~~-~~~~~~~~~~~~~~~~D~wil~~l~~~~ 724 (961)
T PRK13804 647 QSGADILRLWVAS-VDYSDDQRIGKEILKQVSETYRKLRNTLRWLLGNLAH-FDPGEDVVAYADLPELERYMLHRLNELD 724 (961)
T ss_pred hcCHHHHHHHHHh-CCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhcccc-CCcccccCChhhcCHHHHHHHHHHHHHH
Confidence 8999999999997 5788999999999999999999999999999988864 554321 122345678999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHH
Q 001289 835 SRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELW 914 (1107)
Q Consensus 835 ~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelw 914 (1107)
+.+.++|++|+|+.|++++++|+++++||+||+.+|+|++.+... +..+++++.+|+.+++.+++||||||||+|||||
T Consensus 725 ~~v~~~~e~y~f~~a~~~l~~f~~~~lsn~Yle~~K~rl~~~~~~-~~~r~~~~~vL~~il~~l~~lLaPi~P~~aEeiw 803 (961)
T PRK13804 725 GLVREAYDAYDFKRIYKALVNFVNVDLSAFYFDIRKDALYCDAPS-SLRRRAAQTVFYEIFVRLTKWLAPILPFTAEEAW 803 (961)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCC-cHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 999999999999999999999999999999999999998865221 1156789999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCcceeccCCCCCCCCCcHHHHHHHHHHHH----HHHHHHHHHHHhhccCCCCcccE--EEEecChhHH
Q 001289 915 QRLPQPKGCATKESIMLCEYPSAVEGWTDERAEFEMDLVES----TVRCIRSLRAEVLGKQKNERLPA--IAFCQTKGVS 988 (1107)
Q Consensus 915 q~L~~~~~~~~~~SI~~a~~P~~~~~~~d~~~e~~~e~v~~----vi~~iRslr~~~~~k~i~~~~~~--~I~~~~~~~~ 988 (1107)
++|+.. ..+||+++.||.+++.+.|++++..++.+++ |.+++|++|++. +|+...++ .|.+.+....
T Consensus 804 ~~L~~~----~~~sv~l~~wP~~~~~~~d~~~~~~~~~~~~~r~~v~~~le~~R~~~---~i~~~~e~~v~l~~~~~~~~ 876 (961)
T PRK13804 804 LYRYPE----EEVSVHLEQFPETPAFWRDDALAEKWRKFRAVRDVVTGALEEERAAK---RIGSSLEAAPTVYIADPELL 876 (961)
T ss_pred HhcccC----CCCceEecCCCCCcchhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCcceeEEEEcCCHHHH
Confidence 999841 2369999999999888889888888776666 457889999987 78555554 4444443444
Q ss_pred HHHHHHHHHHHhhhccceEEEec
Q 001289 989 EIIRSHELEIVTLSTSSSLKVLL 1011 (1107)
Q Consensus 989 ~~l~~~~~~I~~L~~v~~v~i~~ 1011 (1107)
+.++.+ .|+.|+.+++|++..
T Consensus 877 ~~l~~~--~l~~~~~vs~~~~~~ 897 (961)
T PRK13804 877 AALEGL--DFAEICITSQLTVAA 897 (961)
T ss_pred HHHHHH--HHHHHhhhCceEEec
Confidence 556655 489999999999863
No 16
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=3.6e-161 Score=1525.19 Aligned_cols=760 Identities=29% Similarity=0.481 Sum_probs=669.1
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCcccCC--CCCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccC
Q 001289 143 MAKEYNPSSVEKSWYSWWENSGYFIADN--KSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPG 220 (1107)
Q Consensus 143 ~~~~y~p~~vE~~w~~~W~~~~~f~~~~--~~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G 220 (1107)
++..|||.++|++||++|+++++|++.. +.++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+||
T Consensus 2 f~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G 81 (861)
T TIGR00392 2 FPMRGNLSKREEKILAFWQENDIFEKVKKLNKGKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPG 81 (861)
T ss_pred CCCCCChhHhhHHHHHHHHHCCchhhhhhccCCCCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCC
Confidence 4567999999999999999999999765 34678899999999999999999999999999999999999999999999
Q ss_pred CCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHH
Q 001289 221 MDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFV 300 (1107)
Q Consensus 221 ~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~ 300 (1107)
|||||||||.+|||++......+.+.+++++|+++|++|+.++++.+++||++||+|+||+|+|+||||.|+++|+|+|.
T Consensus 82 ~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~ 161 (861)
T TIGR00392 82 WDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFK 161 (861)
T ss_pred cCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHH
Confidence 99999999999998863221223345788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEeeeeeeecCCCCcccccccccccc----cCCcceeeecCcccccccceEEEEeeecCCCcc--------e
Q 001289 301 RLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVD----IPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLG--------E 368 (1107)
Q Consensus 301 ~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~e----~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~--------~ 368 (1107)
+|+++|||||+.++|||||.|+|+|||+||++.+ .. +..++++|++.+++. +
T Consensus 162 ~l~~~gliyr~~~~v~w~p~~~T~La~~Ev~~~~~~~~~~----------------~~~~~v~f~~~~~~~~~~~~~~~~ 225 (861)
T TIGR00392 162 EAHEKGLLYRGLKPVYWSPRCRTALAEAEVEYKENYKDVK----------------DPSIYVKFPVKKDKKTYLKVKLSS 225 (861)
T ss_pred HHHHCCCEeecceeeecCCCcCCcccHHHHhccccccccc----------------CceEEEEEEecCCcccccccccce
Confidence 9999999999999999999999999999999875 33 345688999876554 8
Q ss_pred EEEeeccccccccCcEEEEcCCCc-----------cc--------------------------ccccCcEEecCCCCCcc
Q 001289 369 IVVATTRVETMLGDTAIAIHPEDA-----------RY--------------------------SHLHGKFAIHPFNGRKI 411 (1107)
Q Consensus 369 i~vaTTrPeT~~gdtaiaV~P~d~-----------ry--------------------------~~l~Gk~~~~P~~~~~i 411 (1107)
|+|||||||||+||+||||||+++ +| .+|+|++|.||+.++.+
T Consensus 226 l~i~TTrP~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~ 305 (861)
T TIGR00392 226 LLIWTTTPWTLPSNLAIAVHPDFEYALVQDNTKVEYFILAKKLVEKLYNKAGSDYEIIKTFKGSDLEGLEYEHPLYDFVS 305 (861)
T ss_pred EEEEECCcccccCCeeeeeCCCCceEEEEcCCCCcEEEEeHHHHHHHHHhcCCceEEEeeecchhhCCCEEECCCCcccc
Confidence 999999999999999999999975 44 56899999999999998
Q ss_pred ------ce-EecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCC------CCCCCChhhHHH
Q 001289 412 ------PI-ICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGL------EFEGMPRFKARE 478 (1107)
Q Consensus 412 ------PI-i~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~------~f~Gl~~~~ar~ 478 (1107)
|| ++|+ +|++++|||+||+|||||++||++|++|||+++++||++|+++++.+. .|.|+++++||+
T Consensus 306 ~~~~~~p~v~~~~-~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~vd~~g~~~~~~~~~~g~~~~~~g~~~~~a~~ 384 (861)
T TIGR00392 306 QLKEGAPVVIGGD-HVTTEDGTGIVHTAPGHGEEDYEIGKKYGLEVLSPVDEKGVYTEGVNDFQGRFVKDADKDIIKANK 384 (861)
T ss_pred ccccCCcEEeCCC-CCCCCCCCceeEcCCCCCHHHHHHHHHcCCCcccccCCCceECCcCccccccccccCCccHHHhHH
Confidence 96 5657 599999999999999999999999999999999999999998776652 489999999999
Q ss_pred HHHHHHHHcCCeeceeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHhcc
Q 001289 479 AVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEA 558 (1107)
Q Consensus 479 ~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~~ 558 (1107)
.|++.|++.|++++.+++.|.||+|||||++|++++++||||+++++++++++++ ++++|+|+..++++.+||++
T Consensus 385 ~ii~~L~~~g~l~~~~~~~h~~p~~~R~~~~v~~~~~~QWFi~~~~~k~~~l~~~-----~~i~~~P~~~~~~~~~~l~~ 459 (861)
T TIGR00392 385 IIIEQLKDKGLLLKAEKITHSYPHCWRTKTPVIYRATEQWFIKTKDIKDQMLEQI-----KKVNWVPEWGEGRFGNWLEN 459 (861)
T ss_pred HHHHHHHhCCCeeeeeeEecCCCccCCCCCEEEEecCccccEEcHHHHHHHHHHh-----CCcEEECchHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999 57999999999999999999
Q ss_pred CCCeeeeecCCCcccceeEEEccCcchhhcc----------CCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCcee
Q 001289 559 IRDWCVSRQLWWGHQIPAWYVTLEDDELKEL----------GSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLD 628 (1107)
Q Consensus 559 l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~~----------~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlD 628 (1107)
++|||||||||||||||+|+|..|++..... ..+.+.|..... .+-.......||.+ ..+.|++||||
T Consensus 460 l~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~-~~~~~~~~~~~~~~-~~~~r~~dvlD 537 (861)
T TIGR00392 460 RPDWCISRQRYWGIPIPIWYCEDTGEPIVVGSIEELIELIELKGIDAWFEDLH-RDFLDKITLKSGDG-GEYRRVPDVLD 537 (861)
T ss_pred CCcceeeccccCCCeeeEEEECCCCCCcCchhHHHHHHHHHHhCCccccccch-hhhcCchhccCCCC-cceEEcccccc
Confidence 9999999999999999999998765321000 001122322110 00001111234433 47899999999
Q ss_pred eEeccCCcccccccCCCCChhhhhhCCcCcccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCC
Q 001289 629 TWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLG 708 (1107)
Q Consensus 629 tWFdSgl~p~s~lgwp~~~~d~~~~yP~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlG 708 (1107)
||||||++|++.++||.++.+|++|||+|++++|+||++||+.+|++.++.++|..||++|++||||+|.+|+|||||+|
T Consensus 538 vWfdS~~~~~~~~~~~~~~~~f~~~~P~d~~i~G~Di~r~Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~~G~KMSKSkG 617 (861)
T TIGR00392 538 VWFDSGSMPYASIHYPFENEKFKEVFPADFILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITHGFTLDEKGRKMSKSLG 617 (861)
T ss_pred chhhcCcchHHhcCCCCCcchhhccCCceEEEEecchhccHHHHHHHHHHHHcCCCChHhhEecceEECCCCCCcCCCCC
Confidence 99999999999999998877899999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHHHHH
Q 001289 709 NVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQ 788 (1107)
Q Consensus 709 NvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r~ 788 (1107)
|||+|.|+|+ +||+|+|||||++. +.++|++|+.+.+.+.++
T Consensus 618 NvI~p~d~i~-------------------------------------~yGaDalR~~ll~~-~~~~D~~fs~~~l~~~~~ 659 (861)
T TIGR00392 618 NVVDPLKVIN-------------------------------------KYGADILRLYVASS-DPWEDLRFSDEILKQVVE 659 (861)
T ss_pred CCCCHHHHHH-------------------------------------HcCHHHHHHHHHhC-CCCCCceECHHHHHHHHH
Confidence 9999999999 89999999999998 889999999999998765
Q ss_pred -HHHHHHHHHHHHh--hhhCCCCCCCC-CCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHH
Q 001289 789 -WCNKLWNAVRFSM--SKLGEGFVPPL-KLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDV 864 (1107)
Q Consensus 789 -f~nKl~N~~rf~l--~~l~~~~~p~~-~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~ 864 (1107)
|+|++||+++|++ +++. +|.|.. ......+...|+||+++++.+++.+.++|++|+|+.|++.+++|++.++||+
T Consensus 660 ~~~n~l~N~~~~~~~~~~l~-~~~~~~~~~~~~~l~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~f~~~~l~n~ 738 (861)
T TIGR00392 660 KYRKIRWNTYRFLLTYANLD-KFDPLFNSVAVEKFPEEDRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNW 738 (861)
T ss_pred HHHHHHHHHHHHHHHHhccc-cCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 6654 354321 1111245678999999999999999999999999999999999998889999
Q ss_pred HHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCcceeccCCCCCCCCCcH
Q 001289 865 FIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWTDE 944 (1107)
Q Consensus 865 Yie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~a~~P~~~~~~~d~ 944 (1107)
|++.+|++++..... + .+++++.+|+.+++.+++||+|||||+||+||+.|+... ..+||+.++||+.++.+.|+
T Consensus 739 Yi~~~k~~lw~~~~~-~-~~~~~~~~l~~~l~~l~~lL~P~~P~~aeeiw~~L~~~~---~~~si~~~~wP~~~~~~~d~ 813 (861)
T TIGR00392 739 YIRIIRDRLYCEAKD-N-DKRAAQTTLYYALLTLVRLLAPFLPHTAEEIYQNLPGGE---EEESVHLNLWPEVDEEFIDE 813 (861)
T ss_pred HHHHhhHHhccCCCC-H-HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhccccC---CCCceeccCCCCCchhhcCH
Confidence 999999977654221 0 334788999999999999999999999999999997521 23699999999999888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 001289 945 RAEFEMDLVESTVRCIRSLRAEVLGKQKN 973 (1107)
Q Consensus 945 ~~e~~~e~v~~vi~~iRslr~~~~~k~i~ 973 (1107)
.++..++.++++++.+|++|++. +++
T Consensus 814 ~~~~~~~~l~~~i~~ir~ir~~~---~~~ 839 (861)
T TIGR00392 814 ALEANMAIVREIVEAFLALRDAA---NKK 839 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---Chh
Confidence 99999999999999999999998 763
No 17
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-161 Score=1471.19 Aligned_cols=754 Identities=30% Similarity=0.502 Sum_probs=669.5
Q ss_pred CccCCCCCcccccccchhhhcCCCchhHHHHHHHHHHhcCCcccCC---CCCCCcEEEECCCCCCCCCCCchhhHHhHHH
Q 001289 125 EFVDPETPLGEKKRMSKQMAKEYNPSSVEKSWYSWWENSGYFIADN---KSSKPSFVIVLPPPNVTGALHIGHALTTAIQ 201 (1107)
Q Consensus 125 ~~~~~~t~~~~k~~~~~~~~~~y~p~~vE~~w~~~W~~~~~f~~~~---~~~k~~f~i~~pPPyvnG~LHiGHal~~~i~ 201 (1107)
+.++|+|.|+++.|+ ...|++|+++|+++++|+... .+++|+|++++||||+||.+|||||+|.+|+
T Consensus 6 tl~lp~T~fpmr~~l----------~~~E~~i~~~W~e~~iy~k~~~~~~~g~~~FvfhDGPPyANG~iHiGHalnKilK 75 (933)
T COG0060 6 TLNLPKTDFPMRANL----------PKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILK 75 (933)
T ss_pred cccCccCCCCccCCh----------hhcCHHHHHHHHHhhHHHHHHHHHhCCCCcEEEeCCCCCCCCCcchhhhHHHhhh
Confidence 388999999999555 579999999999999999766 2667899999999999999999999999999
Q ss_pred HHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccC
Q 001289 202 DTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWS 281 (1107)
Q Consensus 202 D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~ 281 (1107)
|+|.||++|+||+|.++|||||||||||..||+++.. .+....++|.++|+++|++++.+|.+.++++|+|||++.||+
T Consensus 76 DiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~-~k~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~ 154 (933)
T COG0060 76 DIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGI-GKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWE 154 (933)
T ss_pred hhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCC-CcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHhheEeeccC
Confidence 9999999999999999999999999999999998854 444556799999999999999999999999999999999999
Q ss_pred CccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCcccccccccccccCCcceeeecCcccccccceEEEEeee
Q 001289 282 RECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYP 361 (1107)
Q Consensus 282 r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~ 361 (1107)
++|.|||+.|.+.++++|.+|+++||||||.++|+|||+|+|+||++||+|.++.+++ ++++||
T Consensus 155 npY~Tmd~~ye~~~~~~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d~~dpS----------------IyV~F~ 218 (933)
T COG0060 155 NPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEVEYGDVKDPS----------------IYVKFP 218 (933)
T ss_pred CCeecCCHHHHHHHHHHHHHHHHCCCeecCCeeeeecCCCCcchhhhhhcccccCCce----------------EEEEEE
Confidence 9999999999999999999999999999999999999999999999999999988776 468899
Q ss_pred cCC----CcceEEEeeccccccccCcEEEEcCCCcc---------c---------------------------ccccCcE
Q 001289 362 LEG----GLGEIVVATTRVETMLGDTAIAIHPEDAR---------Y---------------------------SHLHGKF 401 (1107)
Q Consensus 362 l~~----~~~~i~vaTTrPeT~~gdtaiaV~P~d~r---------y---------------------------~~l~Gk~ 401 (1107)
+.+ .+.+|+||||+|||||+|.||||||+-++ | ++|.|..
T Consensus 219 v~~~~~~~~~~lviWTTTPWTLPaN~aiav~pd~~Y~lv~~~~~~~IlA~~lve~~~~~~~~~~~~vl~~~kG~~Leg~~ 298 (933)
T COG0060 219 VKDEGLDENAYLVIWTTTPWTLPANLAIAVHPDLDYVLVEVNGEKLILAKALVESVAKKAGVEDYEVLETFKGSELEGLR 298 (933)
T ss_pred eccCCCCCCcEEEEEeCCCCCchhcceeEeCCCcceEEEEECCEEEEEhHHHHHHHHHHcCCcceEEeEEeehhhhCCCE
Confidence 864 46899999999999999999999999642 1 3689999
Q ss_pred EecCCCC----CccceEecCccccCCCCCCceecCCCCCcchHHHHHHhC-CccceeeCCCCccccCCCCCCCCCChhhH
Q 001289 402 AIHPFNG----RKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHN-LEFINIFTDDGKINSNGGLEFEGMPRFKA 476 (1107)
Q Consensus 402 ~~~P~~~----~~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~-L~~i~iid~dG~~~~~~g~~f~Gl~~~~a 476 (1107)
+.|||.+ +..||+.++ ||+.+-|||+||++||||++||.+|+++| ||+++++|++|+++++++ .|.|+.++||
T Consensus 299 y~hPf~~~~~~~~~~v~~gd-~VT~d~GTG~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~G~yt~~~~-~~~G~~v~dA 376 (933)
T COG0060 299 YEHPFYDFVYDRAFPVILGD-HVTLDDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEAP-KYEGLFVKDA 376 (933)
T ss_pred eeCCcccccccceeeEEecC-eEecCCCccceecCCCCCHHHHHHHHHcCCcCCccccCCCccccccch-hhCCceeccC
Confidence 9999985 999999999 59999999999999999999999999999 799999999999999998 9999999999
Q ss_pred HHHHHHHHHHcCCeeceeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHh
Q 001289 477 REAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWL 556 (1107)
Q Consensus 477 r~~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl 556 (1107)
.+.|++.|+++|++++.+.+.|+|||||||++||+++.+||||++++++++++++++ .+++|+|+..++++.+||
T Consensus 377 n~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l~~i-----~~v~w~P~~~~~R~~~mv 451 (933)
T COG0060 377 NKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEI-----NKVNWVPDWGKNRFGNMV 451 (933)
T ss_pred CHHHHHHHHhCCceeeeeeEEeCCCcccCCCCeeEEeecchheeEHHHHHHHHHHHH-----hcceEEChhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988 499999999999999999
Q ss_pred ccCCCeeeeecCCCcccceeEEEccCcchhh---ccC---------CCCCceEEecCHHHHHHHHhhhcCCCCcccccCC
Q 001289 557 EAIRDWCVSRQLWWGHQIPAWYVTLEDDELK---ELG---------SYNDHWIVARDEKEALAVANKKFSGKKFEMCQDP 624 (1107)
Q Consensus 557 ~~l~DWcISRQ~~WG~pIP~~~~~~~~~~~~---~~~---------~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~ 624 (1107)
+|.+||||||||+||+|||+|+|..+++... +.. .+.+.|... ..+ ..-..|+.++.+++|.+
T Consensus 452 e~r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~~~El~e~~~~~~~~~g~~~w~~~-~id----el~~~~~~~g~~~~rv~ 526 (933)
T COG0060 452 ENRPDWCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQLVEEKGIDDWHRP-DID----ELLPPCPEDGKEYRRVP 526 (933)
T ss_pred cCCCcceeeccccCCCceeEEEECCCCCeeccHHHHHHHHHHHhhhcCchhhhcc-chH----hhcCCCCCCcceeEecC
Confidence 9999999999999999999999987643211 000 001111100 000 00011223344899999
Q ss_pred CceeeEeccCCcccccccCCCCChhhhhhCCcCcccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCcccc
Q 001289 625 DVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMS 704 (1107)
Q Consensus 625 DvlDtWFdSgl~p~s~lgwp~~~~d~~~~yP~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMS 704 (1107)
||||||||||.+|.++++ |.+...|..++ +|++.+|+||+|+||.+++++|..++|+.||++|++|||++|++|+|||
T Consensus 527 DvlDVWFDSGs~~~a~~~-~~~~~~~~~~~-aD~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk~vltHGfvlDe~GrKMS 604 (933)
T COG0060 527 DVLDVWFDSGSTPYAVLH-PRENLKFPALF-ADFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVLTHGFVLDEKGRKMS 604 (933)
T ss_pred cceEEEEcCCCCcccccC-CcccccCcccc-CcEEEEeccccchhHHHHHHHHHHHcCCchHHHHhhcccEECCCCCCcc
Confidence 999999999999999998 77654444444 5999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHH
Q 001289 705 KSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVV 784 (1107)
Q Consensus 705 KSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~ 784 (1107)
||+||||+|.+|++ +||||+||||+++.. .+.|+.|+.+.++
T Consensus 605 KSlGN~v~P~~V~~-------------------------------------~yGADiLRLwv~ssd-~~~dl~~s~~il~ 646 (933)
T COG0060 605 KSLGNVVDPQDVID-------------------------------------KYGADILRLWVASSD-YWEDLRFSDEILK 646 (933)
T ss_pred ccCCCcCCHHHHHH-------------------------------------hhCchheeeeeeecC-chhccccCHHHHH
Confidence 99999999999999 999999999998865 7889999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhCCCCCCCCC-CCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhH
Q 001289 785 GYRQWCNKLWNAVRFSMSKLGEGFVPPLK-LHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCD 863 (1107)
Q Consensus 785 ~~r~f~nKl~N~~rf~l~~l~~~~~p~~~-~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d 863 (1107)
..+...++|||++||+++++. +|+|... .....+..+|||||++|+.+++.++++|++|+|+.+++.+++|+..+|++
T Consensus 647 ~~~~~~r~irNt~rF~l~nl~-~fdp~~~~~~~~~~~~~Drwil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~ 725 (933)
T COG0060 647 QVREVYRKIRNTYRFLLGNLD-DFDPKKDAVLPEELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSN 725 (933)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-CCCccccccchhhcchhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhH
Confidence 999999999999999999986 4888754 23346788999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccCC--CcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCcceeccCCCCCCCC
Q 001289 864 VFIEAIKPYFAGD--NPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGW 941 (1107)
Q Consensus 864 ~Yie~~K~~l~~~--~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~a~~P~~~~~~ 941 (1107)
|||+.+|++++.+ ++. +|++|+.|||++|..++++|+||+||+|||+||.|+... ..+||+++.||++.+.+
T Consensus 726 ~Yld~~kdr~y~~~~~s~---~rraa~~~Ly~il~~l~~~lAPilPftaEeiw~~l~~~~---~~eSVhl~~~p~~~~~~ 799 (933)
T COG0060 726 WYLDIIKDRLYTEAADSP---DRRAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGER---KEESVHLEDWPEVDEEL 799 (933)
T ss_pred HHHHHHHHHhhhcCCCCH---HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhCccCC---CCceeEeccCCcccccc
Confidence 9999999999876 333 899999999999999999999999999999999998742 25899999999988776
Q ss_pred C--cHHHHHHHHHHHHHHHHHHHHH
Q 001289 942 T--DERAEFEMDLVESTVRCIRSLR 964 (1107)
Q Consensus 942 ~--d~~~e~~~e~v~~vi~~iRslr 964 (1107)
. +.......+..+++-..++.+.
T Consensus 800 ~~~~~~~~~r~~~~~k~R~~v~~~l 824 (933)
T COG0060 800 IDVEAALAARWEALLKLRDPVNKAL 824 (933)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 6 3444445555555544444443
No 18
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.1e-145 Score=1391.98 Aligned_cols=725 Identities=20% Similarity=0.289 Sum_probs=604.7
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCcccCCCC----CCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeec
Q 001289 143 MAKEYNPSSVEKSWYSWWENSGYFIADNKS----SKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWV 218 (1107)
Q Consensus 143 ~~~~y~p~~vE~~w~~~W~~~~~f~~~~~~----~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~ 218 (1107)
+++.+++.++|++||++|+++++|+++... ++++|+|++||||+||.||||||+|++++|+++||+||+||+|+|+
T Consensus 9 ~~~r~~l~~iE~k~q~~W~~~~~fe~~~~~~~~~~~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp 88 (1084)
T PLN02959 9 TARRDRLLEIEVAVQKWWEEEKVFEAEAGDEPPKPGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLP 88 (1084)
T ss_pred CchhcCHHHHHHHHHHHHHhcCCcccCcccccCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccCCC
Confidence 346688899999999999999999998642 3478999999999999999999999999999999999999999999
Q ss_pred cCCCccChhHHHHHHHHHH--HHhCCC----------------------ccccChHHHHHHHHHHHHH------------
Q 001289 219 PGMDHAGIATQVVVEKKLM--RERKLT----------------------RHDIGREQFVSEVWKWKDE------------ 262 (1107)
Q Consensus 219 ~G~D~~Gi~~q~~vEk~l~--~~~g~~----------------------~~d~~re~f~~~~~~w~~~------------ 262 (1107)
|||||||+||+.+|||... .+.|.. ..++++++|+++|++++.+
T Consensus 89 ~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~~~ 168 (1084)
T PLN02959 89 FAFHCTGMPIKASADKLAREIQQYGNPPVFPEEDEDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIMR 168 (1084)
T ss_pred CCcCCCCccHHHHHHHHHHHHHHcCCCcccccccccccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHHHHh
Confidence 9999999999999988532 223432 2456788999998877655
Q ss_pred ---------------------HHHHHHHHHHHhcCccccCCccccCC--hhhHHHHHHHHHHHHHcCCEEEeeeeeeecC
Q 001289 263 ---------------------YGGTILRQQRRLGASLDWSRECFTMD--EKRSKAVTEAFVRLYKEGLIYRDLRLVNWDC 319 (1107)
Q Consensus 263 ---------------------~~~~i~~ql~~lG~s~DW~r~~~T~d--~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p 319 (1107)
+...++++|++||+++||+|+|+||| |.|.++|+|+|.+|+++|+||||.|||+|||
T Consensus 169 ~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~wcp 248 (1084)
T PLN02959 169 SFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFGLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYSP 248 (1084)
T ss_pred hcCCchhhhhhccCHHHHHHhccHHHHHHHHHhCceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeeeeCC
Confidence 33678999999999999999999999 9999999999999999999999999999999
Q ss_pred CCCcccccccccccccCCcceeeecCcccccccceEEEEeee-----------cCCCcceEEEeeccccccccCcEEEEc
Q 001289 320 VLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYP-----------LEGGLGEIVVATTRVETMLGDTAIAIH 388 (1107)
Q Consensus 320 ~~~TaLsd~EVe~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~-----------l~~~~~~i~vaTTrPeT~~gdtaiaV~ 388 (1107)
.|+|+|||+|+++.+..++.- .+.++|+ +.+++.+|+|||||||||+|+||||||
T Consensus 249 ~~~t~ladhe~~~~e~~~~~~--------------y~~ikf~v~~~~~~~~~~~~~~~~~l~~aTtrPeTl~g~ta~~Vn 314 (1084)
T PLN02959 249 LDGQPCADHDRASGEGVGPQE--------------YVLIKMEVLPPFPGKLKALEGKKVFLAAATLRPETMYGQTNCWVL 314 (1084)
T ss_pred CCCCCchhhHHhcCCCCCcce--------------eEEEEEeecCcchhhhhhcCCCCeEEEEEeCccchhhhheeEEEC
Confidence 999999999999876443321 1223333 234567999999999999999999999
Q ss_pred CCCc----------------c------c------------------ccccCcEEecCCCCCc-cceEecCccccCCCCCC
Q 001289 389 PEDA----------------R------Y------------------SHLHGKFAIHPFNGRK-IPIICDAILVDPKFGTG 427 (1107)
Q Consensus 389 P~d~----------------r------y------------------~~l~Gk~~~~P~~~~~-iPIi~d~~~Vd~~~GTG 427 (1107)
|+++ | | ++|+|+.+.||+++++ +||+++. +|++++|||
T Consensus 315 P~~~Y~~~~~~~~e~~i~s~~~~~~~~~q~~~~~~~~~~~l~~~~G~~L~G~~~~~Pl~~~~~i~ilp~~-~V~~~~GTG 393 (1084)
T PLN02959 315 PDGKYGAYEINDTEVFILTARAALNLAYQNFSKVPGKPTCLVELTGYDLIGLPLKSPLAFNEVIYALPML-TILTDKGTG 393 (1084)
T ss_pred CCCeEEEEEecCCeEEEEehhhhhhhHHhhhcccCCCcEEEEEEEHHHhCCCEEECCCCCCcceeEeceE-EEeCCCCee
Confidence 9976 2 4 5799999999999987 9999998 599999999
Q ss_pred ceecCCCCCcchHHH----------HHHhCC--------ccceeeCCCCc------------------------------
Q 001289 428 AVKITPAHDPNDFDV----------GKRHNL--------EFINIFTDDGK------------------------------ 459 (1107)
Q Consensus 428 ~V~~tPaHd~~D~~~----------~~~~~L--------~~i~iid~dG~------------------------------ 459 (1107)
+||+||||||+||.+ +++||| +++++||.+|.
T Consensus 394 vV~~vPah~pdDy~~~~dl~~k~~~~~kygi~~~~~~~~~~i~iid~~g~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~ 473 (1084)
T PLN02959 394 VVTSVPSDSPDDYMALSDLKAKPALRAKYGVKDEWVLPFEVVPIINIPEFGDKSAEKVCEDLKIKSQNDKEKLAEAKRLT 473 (1084)
T ss_pred eEEeCCCCCHHHHHHHHhhccchhHHHHcCCCcccccccCCcCccccCCCCcchhHHHHHhhcccccchhhHHHHHhhhh
Confidence 999999999999998 577887 56899888653
Q ss_pred ----cccC---CCCCCCCCChhhHHHHHHHHHHHcCCeec-eeccccccceeccCCCeeEeccccccccccc--HHHHHH
Q 001289 460 ----INSN---GGLEFEGMPRFKAREAVNEALKKKGLYRG-AKDNEMRLGLCSRSNDVVEPMIKPQWYVNCN--SMAMEA 529 (1107)
Q Consensus 460 ----~~~~---~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~-~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~--~~~~~a 529 (1107)
+.+. +| +|.|+++++||+.|++.|++.|+++. .++ ..|+|+|||++|++++++||||+|+ ++++++
T Consensus 474 Y~~~f~~g~m~~g-~~~G~~v~eAr~~Ii~~L~~~G~l~~~~ep---~~pv~~R~g~~~~v~l~~QWFi~~~~~~~k~~a 549 (1084)
T PLN02959 474 YLKGFTDGTMLVG-EYAGRKVQEAKPLIKKKLIEAGQAILYSEP---EKKVMSRSGDECVVALTDQWYLTYGEEEWKKKA 549 (1084)
T ss_pred hhhccccccccCc-CcCCcCHHHHHHHHHHHHHhCCCceeeeEc---CCCeEECCCCEEEEeecCCeeEECCchHHHHHH
Confidence 2222 67 89999999999999999999997764 453 3589999999999999999999998 699999
Q ss_pred HHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeecCCCcccceeEEEccCcchhhccCCCCCceEEecCHHHHHHHH
Q 001289 530 LYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVA 609 (1107)
Q Consensus 530 ~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~ 609 (1107)
++++ ++|+|+|+.++++|.+||+|++||||||||||||||| |++....+++.+++.++.++++++..+..
T Consensus 550 ~~~l-----~~v~~~P~~~~~~~~~wl~~l~DWciSRQr~wGtpIP-Wd~~~~ieslsdstiy~a~yti~~~~~~~---- 619 (1084)
T PLN02959 550 EKCL-----SKMNLYSDETRHGFEHTLGWLNQWACSRSFGLGTRIP-WDEQFLIESLSDSTIYMAYYTVAHLLQGG---- 619 (1084)
T ss_pred HHHH-----cccEEECHHHHHHHHHHHhCCCceeecccccCCCcCC-cccceeeccCCCCceeechhhHHHHHhhh----
Confidence 9999 6899999999999999999999999999999999999 75432222233445666655544333221
Q ss_pred hhhcCCC--Cccccc-CCCceeeEeccCCcccccccCCCC-----ChhhhhhCCcCcccccccccchHHHHHHHHHHHhc
Q 001289 610 NKKFSGK--KFEMCQ-DPDVLDTWFSSGLFPLSVLGWPDD-----TDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLG 681 (1107)
Q Consensus 610 ~~~~~~~--~~~l~~-d~DvlDtWFdSgl~p~s~lgwp~~-----~~d~~~~yP~dl~~tG~Dil~fW~armi~~~~~l~ 681 (1107)
..++.. .+..++ ++|||||||+||+||+++ |||.+ +.+|++|||+|++++|+||++||+.+|++.+..++
T Consensus 620 -~~~g~~~~~i~~~~~~~dV~D~wF~Sg~~p~~t-~~p~~~l~~~r~ef~~~yP~Dl~~sG~Dii~~wl~~~l~~~~al~ 697 (1084)
T PLN02959 620 -DMYGKDKSSIKPEQMTDEVWDFVFCGGPLPKSS-DIPAELLEKMKQEFEYWYPFDLRVSGKDLIQNHLTFAIYNHTAIW 697 (1084)
T ss_pred -hccCCccccCChhhcCccceeEeecCCCccccc-CCCHHHHhhhhHHHHhhCCCeEEEecccHHHHHHHHHHHHHHHhc
Confidence 111111 122333 789999999999999998 99985 47899999999999999999999999999999999
Q ss_pred CCCCc-cEEEEcceeeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCch
Q 001289 682 GEVPF-TKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTD 760 (1107)
Q Consensus 682 g~~PF-k~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaD 760 (1107)
|+.|| +.|++||||+ .+|+|||||+||||+|.++|+ +||||
T Consensus 698 ~~~P~p~~v~v~G~V~-~~G~KMSKSkGNvI~p~diI~-------------------------------------kyGAD 739 (1084)
T PLN02959 698 AEEHWPRGFRCNGHLM-LNSEKMSKSTGNFLTLRQAIE-------------------------------------EFSAD 739 (1084)
T ss_pred CCCCCCceEEEccEEe-cCCcCccccCCCcCCHHHHHH-------------------------------------HhCch
Confidence 99999 5799999999 999999999999999999999 89999
Q ss_pred HHHHHHHhccCccccccccHHHHHHHHHHHHHHHHHHHHHhhhhCC--CCCCCCCCCCCCCChhhHHHHHHHHHHHHHHH
Q 001289 761 ALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGE--GFVPPLKLHPHNLPFSCKWILSVLNKAISRTA 838 (1107)
Q Consensus 761 aLRf~L~~~~~~~~Dinf~~~~v~~~r~f~nKl~N~~rf~l~~l~~--~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~ 838 (1107)
+|||||++.++..+|+||+.+...+ +..+++|..+|+...+.. .+.+ ....+..|+||+++|+.+++.++
T Consensus 740 alRl~la~~~~~~~D~nF~~k~~n~---~~~~l~n~~~~~~~~~~~~~~~~~-----~~~~~~~D~wils~l~~~i~~v~ 811 (1084)
T PLN02959 740 ATRFALADAGDGVDDANFVFETANA---AILRLTKEIAWMEEVLAAESSLRT-----GPPSTYADRVFENEINIAIAETE 811 (1084)
T ss_pred HHHHHHhhcCCccCCCCccHHHHHH---HHHHHHHHHHHHHHhhhhhcccCC-----cccCCHHHHHHHHHHHHHHHHHH
Confidence 9999999988888999999877664 344566766666544321 1211 11246789999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhHhHHH-HHhhcc--cccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 001289 839 SSLNSYEFSDAASTVYSWWQYQFCDVF-IEAIKP--YFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQ 915 (1107)
Q Consensus 839 ~a~e~~~f~~a~~~i~~f~~~~l~d~Y-ie~~K~--~l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq 915 (1107)
++|++|+|+.|++.. +| |+.+++ ++++++. ..++.+|+.+|+.+++||||||||+|||||+
T Consensus 812 ~a~e~y~f~~A~~~~----------~Yel~~~k~~yr~~~~~~------~~~~~~L~~vl~~~l~LLaP~~PfiaEEiW~ 875 (1084)
T PLN02959 812 KNYEAMMFREALKSG----------FYDLQAARDEYRLSCGSG------GMNRDLVWRFMDVQTRLITPICPHYAEHVWR 875 (1084)
T ss_pred HHHHcccHHHHHHHH----------HHHHHHhHHHHhhccccc------hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 999999999999963 23 444444 3333211 1457799999999999999999999999999
Q ss_pred hCCCCCCCCCCCcceeccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 001289 916 RLPQPKGCATKESIMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLRAEV 967 (1107)
Q Consensus 916 ~L~~~~~~~~~~SI~~a~~P~~~~~~~d~~~e~~~e~v~~vi~~iRslr~~~ 967 (1107)
.|+.. .+||+.++||.++. .|+.++..++++++++..||++++.+
T Consensus 876 ~l~~~-----~~sI~~~~wP~~~~--~d~~~e~~~~~l~~~i~~iR~~~~~~ 920 (1084)
T PLN02959 876 EILKK-----EGFAVTAGWPVAGE--PDLTLKRANKYLQDSIVSFRKLLQKQ 920 (1084)
T ss_pred hccCC-----CCeEEecCCCCCCc--cCHHHHHHHHHHHHHHHHHHHhHHHh
Confidence 99632 36999999999863 47889999999999999999999886
No 19
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=1.2e-143 Score=1364.88 Aligned_cols=731 Identities=21% Similarity=0.317 Sum_probs=624.6
Q ss_pred hHHHHHHHHHHhcCCcccCCCCCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHH
Q 001289 151 SVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQV 230 (1107)
Q Consensus 151 ~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~ 230 (1107)
+||++||++|+++++|+++.+ .+++|+|++||||+||.||||||+|++++|+++||+||+||+|+|++||||||+||+.
T Consensus 2 ~iE~k~~~~W~~~~~fe~~~~-~~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~ 80 (938)
T TIGR00395 2 AIEKKWQKRWEEAHIFEADPD-DREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILG 80 (938)
T ss_pred hHHHHHHHHHHhCCCcccCCC-CCCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHH
Confidence 599999999999999999764 5789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-h----CCCccccChHHHHHHH--HHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHH
Q 001289 231 VVEKKLMRE-R----KLTRHDIGREQFVSEV--WKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLY 303 (1107)
Q Consensus 231 ~vEk~l~~~-~----g~~~~d~~re~f~~~~--~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ 303 (1107)
++|+..... . ..+++++++++|.+.| ++|+++|.+.+++||++||+|+||+|+|+||||.|+++|+|+|.+|+
T Consensus 81 ~aek~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~L~ 160 (938)
T TIGR00395 81 LAELIKRRDELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLK 160 (938)
T ss_pred HHHHhhhhhhhccccchhhccCCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHHHH
Confidence 998753211 1 1256789999999997 99999999999999999999999999999999999999999999999
Q ss_pred HcCCEEEeeeeeeecCCCCcccccccccccccCCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCc
Q 001289 304 KEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDT 383 (1107)
Q Consensus 304 ~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdt 383 (1107)
++|+|||+.++|+|||.|+|+|||+||++.+..+ .+.+++++|++.+++.+|+|||||||||+|+|
T Consensus 161 e~G~iy~g~~~v~wcp~~~t~lsd~e~~~~e~~~--------------~~~~~~ikf~~~~~~~~l~~aTtRPETl~g~t 226 (938)
T TIGR00395 161 ELGLIVKGEHPVRYCPKDGNPVEDHDLLSGEGVT--------------IVEYILIKFELEDGAFYFVAATLRPETVYGVT 226 (938)
T ss_pred HCCCEecCCeeEeecCCCCCCCchhHhccCCccc--------------cceEEEEEEEcCCCceEEEEeeCCcchhhcce
Confidence 9999999999999999999999999998754322 14567889999877779999999999999999
Q ss_pred EEEEcCCCc---------------------cc-------------ccccCcEEecCCCCCccceEecCccccCCCCCCce
Q 001289 384 AIAIHPEDA---------------------RY-------------SHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAV 429 (1107)
Q Consensus 384 aiaV~P~d~---------------------ry-------------~~l~Gk~~~~P~~~~~iPIi~d~~~Vd~~~GTG~V 429 (1107)
||||||+++ +| ++|+|+++.||++++.+||+++++ |++++|||+|
T Consensus 227 av~V~P~~~Y~~~~~~~e~~i~s~~~~~~~~~q~~~~~~~~~~~g~~l~G~~~~~P~~~~~ipil~~~~-V~~~~GTGvV 305 (938)
T TIGR00395 227 NCWVNPTITYVIAEVGGEKWITSKEAFENLSYQKLKYKPIEEVPGKQFIGKKVHNPVVGPEVPILPAEF-VDTTKGTGVV 305 (938)
T ss_pred eEEECCCCcEEEEEeCCcEEEEeHHHHHhhhhcccceeEEEEEchHhccCCEEECCCCCCeeEEeecce-eecCCCcceE
Confidence 999999986 24 689999999999999999999995 9999999999
Q ss_pred ecCCCCCcchHHHHHHh--------------CCccceeeCC---------------------------------------
Q 001289 430 KITPAHDPNDFDVGKRH--------------NLEFINIFTD--------------------------------------- 456 (1107)
Q Consensus 430 ~~tPaHd~~D~~~~~~~--------------~L~~i~iid~--------------------------------------- 456 (1107)
|+||||||+||++++++ +++++++|+.
T Consensus 306 ~~~Pah~p~Dy~~~~~l~~~~~~~gi~~~~~~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f~ 385 (938)
T TIGR00395 306 MSVPAHAPDDYIALEDLLHDPEYLGIKPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYH 385 (938)
T ss_pred EeCCCCCHHHHHHHHHhhhcchhcCCcchhcccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhcc
Confidence 99999999999998864 4667777643
Q ss_pred CCccccCCCCCCCCCChhhHHHHHHHHHHHcCCeeceeccccccceeccCCCeeEec-cccccccccc--HHHHHHHHhh
Q 001289 457 DGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPM-IKPQWYVNCN--SMAMEALYAV 533 (1107)
Q Consensus 457 dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~-~~~QWfv~~~--~~~~~a~~~v 533 (1107)
+|+|++++| +|+|+++++||+.|++.|+++|+++..+++. ..|+|+|||++|++. +++||||+++ ++++++++++
T Consensus 386 ~G~m~~~~~-~~~G~~v~ear~~i~~~L~~~g~~~~~~~~~-~~~v~~R~g~~~vv~~~~~QWFi~~~~~~~k~~~~~~l 463 (938)
T TIGR00395 386 TGVMIYNIP-PYKGMKVSEAKEKVKADLIDAGLADVMYEFS-ESPVICRCGTDCIVKVVEDQWFVKYSDESWKELAHECL 463 (938)
T ss_pred CceeccCCc-ccCCcCHHHhHHHHHHHHHHCCCceEeeecC-CCCcEecCCCeEEEeccCCCCeEEcCcHHHHHHHHHHH
Confidence 477788888 9999999999999999999999999887653 357788999999987 9999999999 5999999999
Q ss_pred hccCCCceEEeccccHHHHHHHhccCCCeeeeecCCCccccee---EEEccCcchhhccCCCCCceEEecCHHHHHHHHh
Q 001289 534 MDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPA---WYVTLEDDELKELGSYNDHWIVARDEKEALAVAN 610 (1107)
Q Consensus 534 ~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~---~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~ 610 (1107)
++++|+|+..++++.+||+|++|||||||||||||||+ |.+. ++++++.|+.++..++.....
T Consensus 464 -----~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WGtpIP~d~~~~ie----slsdstiY~~~~~i~~~l~~~----- 529 (938)
T TIGR00395 464 -----EGMRIIPEEVKNAFEGKIDWLKDWACCRRYGLGTRLPWDEKWLIE----SLSDSTIYMAYYTIAHYLNKD----- 529 (938)
T ss_pred -----hcCEEeCHHHHHHHHHHHhhhhhcccccccccCcccceeecEEee----ecchhhhhhhhccHHHHhhcc-----
Confidence 57999999999999999999999999999999999994 4432 123344444433333222110
Q ss_pred hhcCCCCcccccCCCceeeEeccCCcccccccCCCC-----ChhhhhhCCcCcccccccccchHHHHHHHHHHHhcCCCC
Q 001289 611 KKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDD-----TDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVP 685 (1107)
Q Consensus 611 ~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~~-----~~d~~~~yP~dl~~tG~Dil~fW~armi~~~~~l~g~~P 685 (1107)
.++.. . ..++++|+||+++-.++ ..|||.. +.+|++|||+|++++|+||++||..++++++.++.+..|
T Consensus 530 -~~~~~--~--l~~ev~D~~~~~~~~~~-~t~~~~~~~~~~~~ef~~~yP~D~~~~GkDii~~H~~~~i~~~~a~~~~~~ 603 (938)
T TIGR00395 530 -YYGNE--Q--MTDEFFDYIFLGKGDVK-NTNIPLPAIQKLRREFEYWYPLDWRISGKDLIPNHLTFYIFHHVAIFPEKF 603 (938)
T ss_pred -CCChH--H--CCcccCceEEECCCChh-hcCCCHHHHHHHHHHHhhcCCceEEEEeeccccchHHHHHHHHHHcCCccc
Confidence 01111 1 24689999998654443 3477753 468999999999999999999999999999988888777
Q ss_pred c-cEEEEcceeeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHH
Q 001289 686 F-TKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRF 764 (1107)
Q Consensus 686 F-k~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf 764 (1107)
| +.|++||||++ +|+|||||+||||||.++|+ +||+|++||
T Consensus 604 ~Pk~i~~~G~vl~-~G~KMSKSlGNvI~p~d~i~-------------------------------------~yGaDalRl 645 (938)
T TIGR00395 604 WPRGIVVNGYVML-EGKKMSKSKGNVLTLEQAVE-------------------------------------KFGADVARL 645 (938)
T ss_pred cCcEEEEeceEEe-CCccccCcCCCCCCHHHHHH-------------------------------------HcChHHHHH
Confidence 7 89999999996 89999999999999999999 899999999
Q ss_pred HHHhccCccccccccHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcC
Q 001289 765 ALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSY 844 (1107)
Q Consensus 765 ~L~~~~~~~~Dinf~~~~v~~~r~f~nKl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~ 844 (1107)
||++.++.++|+||+.+.+.+.+++++++||++++++.... +... ...+..|+||+++++.+++.+.++|++|
T Consensus 646 ~Ll~~~~~~~D~~fs~~~~~~~~~~l~~l~n~~~~~~~~~~----~~~~---~~~~~~D~wlls~l~~~i~~v~~a~e~~ 718 (938)
T TIGR00395 646 YIADAAETVQDADWKESEVEGTILRLERLYEFAEEITKESN----LETG---EETSFIDRWLESRMNAAIKETYEAMENF 718 (938)
T ss_pred HHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhcc----cCCC---ccCChHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999899999999999999999999999999998765422 1110 1245789999999999999999999999
Q ss_pred CHHHHH-HHHHHHHHHhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCC
Q 001289 845 EFSDAA-STVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGC 923 (1107)
Q Consensus 845 ~f~~a~-~~i~~f~~~~l~d~Yie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~ 923 (1107)
+|+.|+ ..+++|++ .||+|++..++. ...+|+.+++.+++||||||||+||+||+.|+.
T Consensus 719 ~~~~Al~~~l~~~~~--~~n~Yl~~~~~~--------------~~~~l~~~l~~~~~LLaP~~P~~aEeiw~~Lg~---- 778 (938)
T TIGR00395 719 QTRKAVKYALFDLQA--DVDWYRRRGGVN--------------HKDVLARYLETWIKLLAPFAPHFAEEMWEEVGN---- 778 (938)
T ss_pred CHHHHHHHHHHHHHH--HHHHHHHhCcch--------------HHHHHHHHHHHHHHHhcCcccHHHHHHHHHcCC----
Confidence 999999 67999973 489998853221 234799999999999999999999999999974
Q ss_pred CCCCcceeccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCC--CCcccEEEEecChhHHHHHH
Q 001289 924 ATKESIMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQK--NERLPAIAFCQTKGVSEIIR 992 (1107)
Q Consensus 924 ~~~~SI~~a~~P~~~~~~~d~~~e~~~e~v~~vi~~iRslr~~~~~k~i--~~~~~~~I~~~~~~~~~~l~ 992 (1107)
.+||+.++||++++.+.|+.++..++.+++++++||++ . ++ +....+.|.+++++..+.+.
T Consensus 779 --~~sv~~~~wP~~~~~~~d~~~~~~~~~~~~~i~~iR~~---~---~~~~~~p~~~~i~~~~~w~~~~~~ 841 (938)
T TIGR00395 779 --EGFVSLAKFPEASEPAVDKEVEAAEEYLRNLVRDIQEI---A---KIDASKPKRVYLYTSEDWKSQCLK 841 (938)
T ss_pred --CCeEEecCCCCCCcccCCHHHHHHHHHHHHHHHHHHHh---h---ccCCCCCcEEEEEECcHHHHHHHH
Confidence 36999999999998888999999999999999888885 3 44 33445667666665554443
No 20
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=5.5e-143 Score=1308.40 Aligned_cols=563 Identities=41% Similarity=0.744 Sum_probs=490.5
Q ss_pred HHHHHHHhcCCcccC--CCCCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHH
Q 001289 155 SWYSWWENSGYFIAD--NKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVV 232 (1107)
Q Consensus 155 ~w~~~W~~~~~f~~~--~~~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~v 232 (1107)
+||++|+++++|+.. ..+++++|+|++||||+||.||||||+|++++|+++||+||+||+|+|+|||||||||||.+|
T Consensus 1 k~~~~W~~~~~~~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~v 80 (601)
T PF00133_consen 1 KWQKFWEENKLFEKQLEKNKNKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKV 80 (601)
T ss_dssp HHHHHHHHTTCCHHHHHCTTTSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHH
T ss_pred CHhHHHhhCCCcccccccCCCCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhH
Confidence 699999999999988 446688999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEee
Q 001289 233 EKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1107)
Q Consensus 233 Ek~l~~~~g~~~~d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 312 (1107)
|+++..+.+++++++|+++|++.|++|++++.+.|++||++||+++||+|+|+||||.|+++|+|+|.+|+++|||||+.
T Consensus 81 ek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~ 160 (601)
T PF00133_consen 81 EKKLGIKEKKDRKDLGREEFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGK 160 (601)
T ss_dssp HHHTTTTSHHHCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhhcccccccccccccccchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeC
Confidence 99987777778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCCCcccccccccccccCCcceeeecCcccccccceEEEEeeecCCCcc-eEEEeeccccccccCcEEEEcCC-
Q 001289 313 RLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLG-EIVVATTRVETMLGDTAIAIHPE- 390 (1107)
Q Consensus 313 ~~V~W~p~~~TaLsd~EVe~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~-~i~vaTTrPeT~~gdtaiaV~P~- 390 (1107)
++|+|||.|+|+|||+||+|+++. +.+++++|++.+++. +|+|||||||||+||+||||||+
T Consensus 161 ~pv~w~p~~~t~lsd~Ev~~~~~~----------------~~~~~v~f~~~~~~~~~l~i~TtrPeTl~~~~ai~vnP~~ 224 (601)
T PF00133_consen 161 KPVNWCPSCQTALSDHEVEYKEVK----------------SPSIYVKFPLKDGEEVYLVIWTTRPETLPGNTAIAVNPDF 224 (601)
T ss_dssp EEEEEETTTTEEE-GGGEEEEEEE----------------EEEEEEEEEESSSSEEEEEEEES-GGGGGG-BEEEE-TTS
T ss_pred CCCCcCcccccchhhhhccccccc----------------CceEEEEEEecCccceEEEEEechhhHHhCCeeEEECCCc
Confidence 999999999999999999998876 457889999988765 99999999999999999999999
Q ss_pred ----------------------------CcccccccCcEEecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHH
Q 001289 391 ----------------------------DARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDV 442 (1107)
Q Consensus 391 ----------------------------d~ry~~l~Gk~~~~P~~~~~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~ 442 (1107)
+.++++|+|+++.|||+++.+|||++++ |++++|||+||+|||||++||++
T Consensus 225 ~Y~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~~vi~~~~-V~~~~GTGiV~~~Pah~~~Dy~~ 303 (601)
T PF00133_consen 225 DYVINGERYIVAKDLVEKLSKQEKTKLEDFRGKELVGLKYIHPLTGREVPVIPDDF-VDMDKGTGIVHSAPAHGPDDYEI 303 (601)
T ss_dssp EEEETTEEEEEEHHHHHHHHTTTSSSEEEEECHHHTTSEEE-TTSSSSEEEEEETT-S-SSSTTSEEEE-TTT-HHHHHH
T ss_pred cceeCCeeehHHHHHHHHHHhhhhhcccccCcceecCcEeccccccceeEEEcccc-cccccchhhhhhcccCCHHHHHH
Confidence 8889999999999999999999999995 99999999999999999999999
Q ss_pred HHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCeeceeccccccceeccCCCeeEecccccccccc
Q 001289 443 GKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNC 522 (1107)
Q Consensus 443 ~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~ 522 (1107)
+++|+|+++++||++|++++++| +|.|+++++||+.|++.|+++|+++..+++.|++|+|||||++|++++++||||++
T Consensus 304 ~~~~~l~~~~~id~~G~~~~~~~-~~~G~~v~~ar~~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~ii~~~~~QWFi~~ 382 (601)
T PF00133_consen 304 GKKHNLPIINPIDEDGRFTEEAG-KFKGMKVFEAREKIIEDLKEKGLLLKIEEIEHSYPHCWRSGTPIIPRLTDQWFIKY 382 (601)
T ss_dssp HHHHHHCCGCCCCCTSTBBSCCS-TTTTSBHHHHHHHHHHHHHHTTSEEEEEEEEEEEEEETTTSCBEEEEEEEEEEEEH
T ss_pred HhhcCceeeEecCCCceEeeccc-ccCCceeeeccHHHHHHHHHhhhhccccccccccceecCCCCEEEecccceeEEec
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeecCCCcccceeEEEccCcchhhccCCCCCceEEecCH
Q 001289 523 NSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDE 602 (1107)
Q Consensus 523 ~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~ 602 (1107)
+++++++++++ .+|+|+|+..+++|.+||++++|||||||||||||||+|+|..+++...... ...++.....
T Consensus 383 ~~~k~~~l~~~-----~~i~~~P~~~~~~~~~~i~~l~DWcISRQR~WG~PIPiw~~~~~~~~~~~~~--~~~~~~~~~~ 455 (601)
T PF00133_consen 383 DDWKKKALEAL-----EKIKFYPESYRKRFENWIDNLRDWCISRQRYWGTPIPIWYCEDCGEVLVIES--TIELIADRVE 455 (601)
T ss_dssp HHHHHHHHHHH-----HTSEESSSTCHHHHHHHHHT--EEE-EESSSSSEBETEEEETTSEEEECCGG--HHHHHHHHST
T ss_pred HHhHHHHHhhc-----ccceEEcccchhhhhhhccccccchhhccCCCCccceeeecccCcccccccc--cccccccccc
Confidence 99999999999 4999999999999999999999999999999999999999987643211000 0000000000
Q ss_pred HHHH-----HHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCC-ChhhhhhCCcCcccccccccchHHHHHHHH
Q 001289 603 KEAL-----AVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDD-TDDLKAFYPTSVLETGHDILFFWVARMVML 676 (1107)
Q Consensus 603 ~ea~-----~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~~-~~d~~~~yP~dl~~tG~Dil~fW~armi~~ 676 (1107)
.... ..+...++.++..++|++||||||||||++|+++++||++ +.+|++|||+|++++|+||+++|+++|+++
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WfdSg~~~~~~~~~~~~~~~~~~~~~P~D~~~~G~D~~~~W~~~~l~~ 535 (601)
T PF00133_consen 456 KEGIDAWLHKPAEDKLPCCGGELRRDTDVLDTWFDSGLWPFAVLGWPENDREEFEYWYPVDLYIEGKDQIRGWFQSSLFL 535 (601)
T ss_dssp HHHHSCTSSHHHHHHHTTTSSEEEEHS-EE-HHHHHCTCHHHHTTSTTCSCHHHHHHSSBSEEEEEGGGTTTHHHHHHHH
T ss_pred cccccccccccccccccccccceEEeeeeccccccccCCcccccccccccchhccccCCcccccCCccchhhHHHHhHhh
Confidence 0000 0112233556667899999999999999999999999987 789999999999999999999999999999
Q ss_pred HHHhcCCCCccEEEEcceeeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCC
Q 001289 677 GIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPE 756 (1107)
Q Consensus 677 ~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~ 756 (1107)
+.+++++.||++|++||||+|.+|+|||||+||||+|.++|+ +
T Consensus 536 ~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~-------------------------------------~ 578 (601)
T PF00133_consen 536 SVALFGKEPFKKVITHGFVLDEDGRKMSKSKGNVIDPEDIIE-------------------------------------K 578 (601)
T ss_dssp HHHHSSSTSBSEEEEE--EEETTSSB-BTTTTB--BHHHHHH-------------------------------------H
T ss_pred ccccccCCchheeeecccccccceeecccCCCcccCHHHHHH-------------------------------------H
Confidence 999999999999999999999999999999999999999999 9
Q ss_pred CCchHHHHHHHhccCcccccccc
Q 001289 757 CGTDALRFALVSYTAQSDKINLD 779 (1107)
Q Consensus 757 ~GaDaLRf~L~~~~~~~~Dinf~ 779 (1107)
||||+||||++++++.++|++||
T Consensus 579 yGaD~lRl~~~~~~~~~~D~~~s 601 (601)
T PF00133_consen 579 YGADALRLWLASSADPGQDINFS 601 (601)
T ss_dssp T-HHHHHHHHHHHS-TTS-EEE-
T ss_pred hCcHHHHHHHHhcCCcccCcccC
Confidence 99999999999889999999996
No 21
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.1e-135 Score=1287.04 Aligned_cols=686 Identities=25% Similarity=0.393 Sum_probs=585.9
Q ss_pred CCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHH---------HH-hCCCccccChHHHHHHHHHH
Q 001289 190 LHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLM---------RE-RKLTRHDIGREQFVSEVWKW 259 (1107)
Q Consensus 190 LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~---------~~-~g~~~~d~~re~f~~~~~~w 259 (1107)
||||||+|++++|+++||+||+||+|+|++||||||+||+..+|+... ++ .|+++.++ ++| ..|++|
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i--~~f-~~~~~~ 77 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEEL--EKF-KDPEYI 77 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHH--HHh-cCHHHH
Confidence 799999999999999999999999999999999999999999976310 01 14443333 345 347999
Q ss_pred HHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCcccccccccccccCCcc
Q 001289 260 KDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKRE 339 (1107)
Q Consensus 260 ~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~e~~~~t 339 (1107)
+++|.+.+++||++||+|+||+|+|+||||.|+++|+|+|.+|+++||||||.++|+|||.|+|+|||+||.+.+..+
T Consensus 78 ~~~~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~e~~~-- 155 (897)
T PRK12300 78 VEYFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEPE-- 155 (897)
T ss_pred HHHhHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcCCCCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998753222
Q ss_pred eeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCc---------------------ccc---
Q 001289 340 MRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDA---------------------RYS--- 395 (1107)
Q Consensus 340 ~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~---------------------ry~--- 395 (1107)
.+.+++++|+ .+++.+|+|||||||||+|+|||||||+++ +|+
T Consensus 156 ------------~~~~~~ikf~-~~~~~~l~~~TtrPeTl~g~tai~V~P~~~Y~~~~~~~e~~i~a~~~~~~~~~~~~~ 222 (897)
T PRK12300 156 ------------IVEYTLIKFE-ESEDLILPAATLRPETIFGVTNLWVNPDATYVKAEVDGEKWIVSKEAAEKLSFQDRD 222 (897)
T ss_pred ------------cceEEEEEEe-CCCceEEEEEECCcchhccceEEEECCCCcEEEEEECCEEEEEeHHHHHHHhcCcCC
Confidence 2445677787 556678999999999999999999999998 455
Q ss_pred ----------cccCcEEecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhC--------Cccceee---
Q 001289 396 ----------HLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHN--------LEFINIF--- 454 (1107)
Q Consensus 396 ----------~l~Gk~~~~P~~~~~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~--------L~~i~ii--- 454 (1107)
+|+|+++.|||+++.+||+++++ |++++|||+||+|||||++||+++++++ |++++++
T Consensus 223 ~~~~~~~~G~~l~G~~~~~Pl~~~~ipil~~~~-V~~~~GTGvV~~~Pah~~~Dy~~~~~~~~~~~~~~~l~~i~ii~v~ 301 (897)
T PRK12300 223 VEIIEEIKGSELIGKKVKNPVTGKEVPILPADF-VDPDNGTGVVMSVPAHAPYDYVALRDLKKNKELLDVIEPIPLIEVE 301 (897)
T ss_pred ceEEEEeehHHhcCCEEECCCCCCeEEEeccCe-eecCCCeeeEEeCCCCCHHHHHHHHHhccccccccccCCcceEecC
Confidence 79999999999999999999995 9999999999999999999999999998 7876666
Q ss_pred --------------------C---------------CCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCeeceeccccc
Q 001289 455 --------------------T---------------DDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMR 499 (1107)
Q Consensus 455 --------------------d---------------~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~~~~~~ 499 (1107)
| .+|+|++++| +|+|++++|||+.|++.|+++|++...+.++|
T Consensus 302 ~~g~~~a~~~~~~~~~~~~~d~~l~~a~~~~y~~~f~~G~~~~~~g-~~~G~~v~eA~~~I~~~L~~~g~~~~~~~~~~- 379 (897)
T PRK12300 302 GYGEFPAKEVVEKLGIKSQEDPELEEATKEVYRAEFHKGVLKENTG-EYAGKPVREAREKITKDLIEKGIADIMYEFSN- 379 (897)
T ss_pred CcCcccHHHHHHHhCCCCccchhHHHHHHHhhhccccceEEeeccc-CcCCeEHHHHHHHHHHHHHHCCCeEEEEecCC-
Confidence 3 4899998888 99999999999999999999999999988888
Q ss_pred cceeccCCCeeEecc-ccccccccc--HHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeecCCCccccee
Q 001289 500 LGLCSRSNDVVEPMI-KPQWYVNCN--SMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPA 576 (1107)
Q Consensus 500 ~p~c~Rs~~~ie~~~-~~QWfv~~~--~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~ 576 (1107)
+|+|+|||++|++++ ++||||+++ ++++++++++ ++++|+|+..++++.+||+|++|||||||||||||||+
T Consensus 380 ~~~~~R~~~~~i~~~~~~QWFi~~~~~~~k~~~~~~~-----~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WGtpiP~ 454 (897)
T PRK12300 380 RPVYCRCGTECVVKVVKDQWFIDYSDPEWKELAHKAL-----DNMEIIPEEYRKEFENTIDWLKDRACARRRGLGTRLPW 454 (897)
T ss_pred CCcCcCCCCEEEEEecCCceEEEcCcHHHHHHHHHHH-----ccCEEECHHHHHHHHHHHhhhhhcceeeccccCCcCCc
Confidence 577779999999865 699999998 7999999999 68999999999999999999999999999999999995
Q ss_pred ---EEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcc---cccccCCCC----
Q 001289 577 ---WYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFP---LSVLGWPDD---- 646 (1107)
Q Consensus 577 ---~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p---~s~lgwp~~---- 646 (1107)
|.+..+ .+++.|+..+.+++..++ ++...-.+ .++++|+||.++..+ ....|||.+
T Consensus 455 ~~~w~~esl----~ds~iY~~~~~i~~~l~~--------~g~~~~~l--~~~~~D~~~~~~~~~~~~~~~sg~p~~~~~~ 520 (897)
T PRK12300 455 DEEWIIESL----SDSTIYMAYYTIAHKIRE--------YGIKPEQL--TPEFFDYVFLGKGDPEEVSKKTGIPKEILEE 520 (897)
T ss_pred cCCEEeeec----cccchhhhHHHHHHHHHH--------cCCChHHC--ChhhCceEEeCCCccccCchhcCCCHHHHHH
Confidence 555322 223333332222211111 11111112 357888888665332 223466654
Q ss_pred -ChhhhhhCCcCcccccccccchHHHHHHHHHHHhcCCCCc-cEEEEcceeeCCCCccccccCCCccCccccccccCchh
Q 001289 647 -TDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPF-TKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEG 724 (1107)
Q Consensus 647 -~~d~~~~yP~dl~~tG~Dil~fW~armi~~~~~l~g~~PF-k~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~ 724 (1107)
+++|++|||+|++++|+||++||..++++++..+.+..|| ++|++||||++ +|+|||||+||||||.++|+
T Consensus 521 ~~~~f~~~~P~D~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~-~G~KMSKS~GNvVdp~eii~------ 593 (897)
T PRK12300 521 MREEFLYWYPVDWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLL-EGKKMSKSKGNVIPLRKAIE------ 593 (897)
T ss_pred HHHHHhccCCceEEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEE-CCccccCcCCCCCCHHHHHH------
Confidence 4679999999999999999999999999999999998888 89999999998 89999999999999999999
Q ss_pred HHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001289 725 LHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKL 804 (1107)
Q Consensus 725 l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r~f~nKl~N~~rf~l~~l 804 (1107)
+||+|+|||||++.++.++|++|+.+.+.+++++++++||+++++.+..
T Consensus 594 -------------------------------~yGaDalRl~L~~~~~~~~D~~fs~~~v~~~~~~l~r~~~~~~~~~~~~ 642 (897)
T PRK12300 594 -------------------------------EYGADVVRLYLTSSAELLQDADWREKEVESVRRQLERFYELAKELIEIG 642 (897)
T ss_pred -------------------------------HcChHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8999999999999999999999999999999999999999999876432
Q ss_pred CCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHHHHhhcccccCCCcccHHHH
Q 001289 805 GEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASER 884 (1107)
Q Consensus 805 ~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~~~~~~~~~~ 884 (1107)
. . ...+..|+||+++++.+++.+.++|++|+|+.|+++++.|+++ .+|+|++.+++
T Consensus 643 ~-----~-----~~~~~~D~wils~l~~~i~~v~~~~e~~~~~~A~~~i~~~l~~-~~n~Yi~~~k~------------- 698 (897)
T PRK12300 643 G-----E-----EELRFIDKWLLSRLNRIIKETTEAMESFQTRDAVQEAFYELLN-DLRWYLRRVGE------------- 698 (897)
T ss_pred C-----c-----cccCHhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-HHHHHHHhcch-------------
Confidence 1 1 1245789999999999999999999999999999999877655 47999998765
Q ss_pred HHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCcceeccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 001289 885 SAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLR 964 (1107)
Q Consensus 885 ~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~a~~P~~~~~~~d~~~e~~~e~v~~vi~~iRslr 964 (1107)
.++.+|+.+++.+++||+|||||+||+||+.|+. .+||+.+.||++++.+.|+.++..++.++++++.+|++|
T Consensus 699 -~~~~~l~~~l~~~~~lLaPf~P~~aEeiw~~L~~------~~sv~~~~wP~~~~~~~d~~~~~~~~~~~~~i~~ir~~~ 771 (897)
T PRK12300 699 -ANNKVLREVLEIWIRLLAPFTPHLAEELWHKLGG------EGFVSLEKWPEPDESKIDEEAELAEEYVKRLIEDIREIL 771 (897)
T ss_pred -HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCC------CCeEEeCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2467899999999999999999999999999974 269999999999998999999999999999999999999
Q ss_pred HHhhccCCCCcccEEEEecChhHH
Q 001289 965 AEVLGKQKNERLPAIAFCQTKGVS 988 (1107)
Q Consensus 965 ~~~~~k~i~~~~~~~I~~~~~~~~ 988 (1107)
+.. +++. ..+.|.+.+++..
T Consensus 772 ~~~---~~~~-~~~~i~~~~~~~~ 791 (897)
T PRK12300 772 KVA---KIKP-KKVYIYVAPDWKY 791 (897)
T ss_pred HHc---CCCC-ceEEEEECCHHHH
Confidence 988 7743 3566666655543
No 22
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=5e-134 Score=1261.73 Aligned_cols=644 Identities=28% Similarity=0.411 Sum_probs=538.8
Q ss_pred CCchhHHHHHHHHHHhcCCcccCCCCCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccCh
Q 001289 147 YNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGI 226 (1107)
Q Consensus 147 y~p~~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi 226 (1107)
|||+++|++||++|+++++|++..+.++++|++++|||||||.||||||++++++|+++||+||+||+|+|++||||||+
T Consensus 1 y~~~~iE~kwq~~W~~~~~f~~~~~~~k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Gl 80 (842)
T TIGR00396 1 YNHIEIEEKWQQKWKENKVFKFTDDSNKPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGL 80 (842)
T ss_pred CCHHHHHHHHHHHHHhcCCcccCCCCCCCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCCh
Confidence 89999999999999999999988766778999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcC
Q 001289 227 ATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEG 306 (1107)
Q Consensus 227 ~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~G 306 (1107)
|++.++++ .|.++ .+|++++++.|++||++||+++||+|+++||||.|.++++|+|.+||++|
T Consensus 81 pie~~a~~-----~g~~p------------~~~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kG 143 (842)
T TIGR00396 81 PAENAAIK-----RGIHP------------AKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKG 143 (842)
T ss_pred HHHHHHHH-----cCCCH------------HHHHHHHHHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 99988764 46554 47999999999999999999999999999999999999999999999999
Q ss_pred CEEEeeeeeeecCCCCcccccccccccc---cCCc---------ceeeecCcccccc----------------------c
Q 001289 307 LIYRDLRLVNWDCVLRTAISDIEVDYVD---IPKR---------EMRNVPGYEKQVE----------------------F 352 (1107)
Q Consensus 307 lIyr~~~~V~W~p~~~TaLsd~EVe~~e---~~~~---------t~~~vp~y~~~~~----------------------~ 352 (1107)
+|||+.++|||||.|+|+|||+||++.. ..+. .+++++.|++.+. -
T Consensus 144 liy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~~~~wp~~v~~~q~~wig~ 223 (842)
T TIGR00396 144 LAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDHWPESVKEMQRNWIGK 223 (842)
T ss_pred CeEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHHHHhhhccccHHHHHHHHhcccc
Confidence 9999999999999999999999995422 1122 2567776664321 1
Q ss_pred ceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccc---------------------------------cccC
Q 001289 353 GVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYS---------------------------------HLHG 399 (1107)
Q Consensus 353 g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~---------------------------------~l~G 399 (1107)
+..++++|++.+++.+|+|||||||||+|++||||||+++++. .|+|
T Consensus 224 s~g~~i~f~~~~~~~~l~v~TTrP~Tl~g~~~iav~p~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~g 303 (842)
T TIGR00396 224 SEGVEITFKIADHKEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAENNPKVAAFIKKILQKTTTERTKETKLKKGVFTG 303 (842)
T ss_pred cceEEEEEEcCCCCCEEEEEeCCcHHhhhccEEEECCCCHHHHhhhcchHHHHHHHHHHhccCchhhhhhhcccccEecC
Confidence 3346788999877789999999999999999999999998542 2889
Q ss_pred cEEecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCC------------CCccccCCCCC
Q 001289 400 KFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTD------------DGKINSNGGLE 467 (1107)
Q Consensus 400 k~~~~P~~~~~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~------------dG~~~~~~g~~ 467 (1107)
++++||++++.+||+.+++ |++++|||+||+|||||++||++|++|||+++++|++ +|+|++ .| .
T Consensus 304 ~~~~~P~~~~~ipi~~~~~-V~~~~GTG~V~~~Pahd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~G~~~~-~~-~ 380 (842)
T TIGR00396 304 IKAIHPLTGEKIPIWVANY-VLASYGTGAVMGVPAHDERDFEFAQKYKLPIKVVIDPAGKNLKTQAFTEDGVLVN-SG-E 380 (842)
T ss_pred CEEECCCCCCEeEEEEeCc-ccCCCCCCeEEEcCCCCHHHHHHHHHhCCCcceeeCCcccccccccccCCceEec-ch-h
Confidence 9999999999999999995 9999999999999999999999999999999999983 788874 57 8
Q ss_pred CCCCChhhHHHHHHHHHHHcCCeeceeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccc
Q 001289 468 FEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQ 547 (1107)
Q Consensus 468 f~Gl~~~~ar~~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~ 547 (1107)
|.||++++||++|++.|+++|++.+. +.+
T Consensus 381 ~~Gl~~~~A~~~Ii~~L~~~g~~~~~-----------------------------------------------v~y---- 409 (842)
T TIGR00396 381 FNGLNSSEAREAIIAMLEKEGKGKRK-----------------------------------------------VNY---- 409 (842)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCce-----------------------------------------------EEe----
Confidence 99999999999999999999985311 111
Q ss_pred cHHHHHHHhccCCCeeeeecCCCcccceeEEEccCcch-hhc-----cCCCC-CceEEec-CHHHHHHHHhhhcCCCCcc
Q 001289 548 YTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDE-LKE-----LGSYN-DHWIVAR-DEKEALAVANKKFSGKKFE 619 (1107)
Q Consensus 548 ~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~-~~~-----~~~~~-~~w~~~~-~~~ea~~~~~~~~~~~~~~ 619 (1107)
+++|||||||||||+|||+|||..|+.. .++ ..+.. ...-.+. ............||.++..
T Consensus 410 ----------rlrDW~ISRQRyWG~PIPi~~~~~~g~~~v~~~~lp~~l~~~~~~~~~~~~pl~~~~~~~~~~cp~cg~~ 479 (842)
T TIGR00396 410 ----------RLRDWLFSRQRYWGEPIPIIHCEDGGAVPVPEEDLPVILPELVNYDPDGNSPLSRIQEWVNVTCPSCGKP 479 (842)
T ss_pred ----------ecccceeecccccCCceEEEEECCCCeEeCcchhcchhhhhhhhccCCCCCchhhhhhhhcCcCccCCCC
Confidence 5789999999999999999999876531 110 00000 0000011 1122223344567766667
Q ss_pred cccCCCceeeEeccCCcccccccCCC------CChhhhhhCCcCccccccc--ccchHHHHHHHHHHH----hcCCCCcc
Q 001289 620 MCQDPDVLDTWFSSGLFPLSVLGWPD------DTDDLKAFYPTSVLETGHD--ILFFWVARMVMLGIK----LGGEVPFT 687 (1107)
Q Consensus 620 l~~d~DvlDtWFdSgl~p~s~lgwp~------~~~d~~~~yP~dl~~tG~D--il~fW~armi~~~~~----l~g~~PFk 687 (1107)
++|++|||||||||| ||+..+.||. +++++++|||+|++++|.| |+|+|++||....+. +.++.||+
T Consensus 480 ~~retDtmDtw~dSs-wy~~r~~~p~~~~~~~~~~~~~~~~PvD~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk 558 (842)
T TIGR00396 480 ALRETDTMDTFAGSS-WYYLRYLDPKNTDQPFDKEKAEYWLPVDLYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFK 558 (842)
T ss_pred cEeCCCCCCCcccCC-HHHHHhhCCCCcCCCcChHHHhccCCCcEeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHH
Confidence 999999999999998 5555544554 4567899999999999987 567778777543333 46889999
Q ss_pred EEEEcceeeC----CCCc---------------------------cccccCCCccCccccccccCchhHHHHhhcCCCCh
Q 001289 688 KVYLHPMIRD----AHGR---------------------------KMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDP 736 (1107)
Q Consensus 688 ~V~~Hg~v~D----~~G~---------------------------KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~ 736 (1107)
+|++||||+| ++|+ |||||+||||+|.++|+
T Consensus 559 ~l~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~KMSKS~GN~v~p~~ii~------------------ 620 (842)
T TIGR00396 559 KLINQGMVLGFYYPPNGKSPPDELTERDEKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVK------------------ 620 (842)
T ss_pred HHhccceEEeeeecCCCCccChhhhccccccccccCCcccccchhhhhhcCCCcCCHHHHHH------------------
Confidence 9999999999 8999 99999999999999999
Q ss_pred HHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCC
Q 001289 737 KELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHP 816 (1107)
Q Consensus 737 ~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r~f~nKl~N~~rf~l~~l~~~~~p~~~~~~ 816 (1107)
+||+|++|||+++.++.++|++|+.+.+.+.++|++||||+++++++++.+ +.. ...
T Consensus 621 -------------------~ygaDalRl~~l~~~~~~~d~~~~~~~l~~~~~~l~kl~~~~~~~~~~~~~-~~~---~~~ 677 (842)
T TIGR00396 621 -------------------KHGADALRLYIMFMGPIAASLEWNDSGLEGARRFLDRVWNLFYNILGELDG-KTY---LTP 677 (842)
T ss_pred -------------------HcCchHHHHHHHhcCCcCCCCccCHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccc---CCc
Confidence 899999999999888888999999999999999999999999998776632 210 111
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHH
Q 001289 817 HNLPFSCKWILSVLNKAISRTASSLNSYE-FSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCL 895 (1107)
Q Consensus 817 ~~~~~~D~wil~~L~~~~~~v~~a~e~~~-f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~~~~~~~~~~~~a~~~L~~~l 895 (1107)
..++..|+||+++|+++++.++++|++|+ |+.|++++|+|+ +++.+. .. ..+|+.++
T Consensus 678 ~~l~~~d~~il~~l~~~i~~v~~~~e~y~~fn~ai~~l~~f~-n~L~~~------------------~~---~~~l~~~l 735 (842)
T TIGR00396 678 TILEEAQKELRRDVHKFLKKVTEDLEKLESFNTAISAMMILL-NALYKA------------------KK---DALYLEYL 735 (842)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HHHHhh------------------hh---HHHHHHHH
Confidence 23467899999999999999999999998 999999999997 444331 00 13789999
Q ss_pred HHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCcceeccCCCCCCC
Q 001289 896 ETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEG 940 (1107)
Q Consensus 896 ~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~a~~P~~~~~ 940 (1107)
+.+++||||||||+|||||+.|+.. ..||+.++||++++.
T Consensus 736 ~~ll~lLaPf~PhiaEElW~~l~~~-----~~sv~~~~wP~~d~~ 775 (842)
T TIGR00396 736 KGFLTVLSPFAPHLAEELWEKLGSE-----PFIIKQAKWPKVDET 775 (842)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhCCC-----CCeeecCCCCCCCHH
Confidence 9999999999999999999999741 258999999998754
No 23
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=3.8e-133 Score=1251.97 Aligned_cols=649 Identities=28% Similarity=0.430 Sum_probs=540.1
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCcccCCCCCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCC
Q 001289 143 MAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMD 222 (1107)
Q Consensus 143 ~~~~y~p~~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D 222 (1107)
|.+.|||.++|++|+++|+++++|++..+.+ ++|++++|||||||.|||||+++++++|+++||+||+|++|+|++|||
T Consensus 1 ~~~~y~~~~iE~~w~~~W~~~~~f~~~~~~~-~~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D 79 (805)
T PRK00390 1 MMERYNPKEIEKKWQKYWEENKTFKTTEDSS-KKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWD 79 (805)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcccCccCC-CCEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccC
Confidence 3467999999999999999999999876433 479999999999999999999999999999999999999999999999
Q ss_pred ccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHH
Q 001289 223 HAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRL 302 (1107)
Q Consensus 223 ~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L 302 (1107)
|||+|||..+++ .|.+ +++|++++++.|++||++||+++||+++++||||.|.++|+++|.+|
T Consensus 80 ~~Glpie~~a~~-----~g~~------------~~~~~~~~~~~~~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L 142 (805)
T PRK00390 80 AFGLPAENAAIK-----TGTH------------PAEWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIFLKL 142 (805)
T ss_pred CCCCHHHHHHHH-----cCCC------------HHHHHHHHHHHHHHHHHHhCCcccCCCCeecCCHHHHHHHHHHHHHH
Confidence 999999988764 3544 46899999999999999999999999999999999999999999999
Q ss_pred HHcCCEEEeeeeeeecCCCCccccccccccc--ccCCc---------ceeeecCccccc---------------------
Q 001289 303 YKEGLIYRDLRLVNWDCVLRTAISDIEVDYV--DIPKR---------EMRNVPGYEKQV--------------------- 350 (1107)
Q Consensus 303 ~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~--e~~~~---------t~~~vp~y~~~~--------------------- 350 (1107)
+++|+|||+.++|||||.|+|+|||+||++. +..+. .+++++.|++.+
T Consensus 143 ~~~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~~~w~~~v~~~~~~w 222 (805)
T PRK00390 143 YEKGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKLEDWPEKVKTMQRNW 222 (805)
T ss_pred HHCCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHHHhhccCcHHHHHHHHhh
Confidence 9999999999999999999999999999742 22222 234555543221
Q ss_pred -ccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCccccc---------------------------------
Q 001289 351 -EFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSH--------------------------------- 396 (1107)
Q Consensus 351 -~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~--------------------------------- 396 (1107)
..+..++++|++.+++.+|+|||||||||+||+||||||+++++..
T Consensus 223 ig~~~~~~i~f~~~~~~~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 302 (805)
T PRK00390 223 IGRSEGAEVTFKVEDSDEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAEQNPAVAAFIEECKKKSDLERQTETKEKTGV 302 (805)
T ss_pred ccccceEEEEEEccCCCCEEEEEeCCchHhhcceEEEECCCChhHHhhhcchHHHHHHHHHHhhhcchhhhhcccceeee
Confidence 1235678999998777899999999999999999999999987644
Q ss_pred ccCcEEecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCC--------------CCcccc
Q 001289 397 LHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTD--------------DGKINS 462 (1107)
Q Consensus 397 l~Gk~~~~P~~~~~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~--------------dG~~~~ 462 (1107)
|+|+++.||++++.+||+.+++ |++++|||+||+|||||++||++|++|||+++++||+ +|+|++
T Consensus 303 l~g~~~~~P~~~~~ipi~~~~~-V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~i~~~g~~~~~~~~~~~~~g~~~~ 381 (805)
T PRK00390 303 FTGLYAIHPLTGEKIPVWIADY-VLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKPVIEPGDGDEDISEEAYTGDGVLIN 381 (805)
T ss_pred ecCcEEECCCCCCeeeEEEecc-ccCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeCCCCcccccccccccCCeEEEe
Confidence 5899999999999999999995 9999999999999999999999999999999999975 455543
Q ss_pred CCCCCCCCCChhhHHHHHHHHHHHcCCeeceeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceE
Q 001289 463 NGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLE 542 (1107)
Q Consensus 463 ~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~ 542 (1107)
.| .|.|+.+++||++|++.|+++|++. +.+.
T Consensus 382 -~~-~~~Gl~~~~a~~~Ii~~L~~~g~~~-----------------------------------------------~~v~ 412 (805)
T PRK00390 382 -SG-ELDGLDSEEAKEAIIAWLEEKGLGK-----------------------------------------------RKVN 412 (805)
T ss_pred -cc-ccCCCCHHHHHHHHHHHHHHcCCCC-----------------------------------------------CceE
Confidence 36 8999999999999999999999842 1122
Q ss_pred EeccccHHHHHHHhccCCCeeeeecCCCcccceeEEEccCcch-hhc--c---CC------CCCceEEecCHHHHHHHHh
Q 001289 543 LIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDE-LKE--L---GS------YNDHWIVARDEKEALAVAN 610 (1107)
Q Consensus 543 ~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~-~~~--~---~~------~~~~w~~~~~~~ea~~~~~ 610 (1107)
+ +++|||||||||||||||+|||..|+.. .+. . .+ ..+.|. ..+.....
T Consensus 413 ~--------------~l~DW~ISRQR~WG~PIPi~~~~~~g~~~v~~~~l~~~l~~~~~~~~~~~~~-----~~~~~~~~ 473 (805)
T PRK00390 413 Y--------------RLRDWGISRQRYWGEPIPIIHCEDCGIVPVPEEDLPVVLPEDVVPDGTGSPL-----AKHPEWVN 473 (805)
T ss_pred E--------------ECCCccccccccCCCceeEEEECCCCceeCchHhhhhhhhhhcccCCCCChh-----hhchhhhC
Confidence 2 4789999999999999999999876531 000 0 00 001121 11222233
Q ss_pred hhcCCCCcccccCCCceeeEeccCCcccccccCCCC------ChhhhhhCCcCcccccccc--cchHHHHHH-----HHH
Q 001289 611 KKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDD------TDDLKAFYPTSVLETGHDI--LFFWVARMV-----MLG 677 (1107)
Q Consensus 611 ~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~~------~~d~~~~yP~dl~~tG~Di--l~fW~armi-----~~~ 677 (1107)
..||.++..++|++|||||||||+ ||+..++||++ +++|++|||+|++++|+|+ +|+|++||. .++
T Consensus 474 ~~~~~~g~~~~re~Dv~DtwfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~P~Dly~~G~D~~i~hL~y~Rf~~~~l~~~~ 552 (805)
T PRK00390 474 VTCPKCGKPARRETDTMDTFVGSS-WYYLRYTDPHNDEAPFDKEAANYWLPVDQYIGGIEHAVLHLLYARFFTKVLRDLG 552 (805)
T ss_pred CCccccCCCceeCCcccccccccc-cHHHHhcCcccccCcCChHHhhCcCCCcEEeccHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555557999999999999998 88888889863 4678999999999999994 555555544 333
Q ss_pred HHhcCCCCccEEEEcceeeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCC
Q 001289 678 IKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPEC 757 (1107)
Q Consensus 678 ~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~ 757 (1107)
+ ++|+.||++|++|||| |||||+||||+|.++|+ +|
T Consensus 553 ~-~~~~~Pfk~v~~~G~v------KMSKS~GN~i~p~~~i~-------------------------------------~y 588 (805)
T PRK00390 553 L-VSSDEPFKKLLTQGMV------KMSKSKGNVVDPDDIIE-------------------------------------KY 588 (805)
T ss_pred c-ccCCcchhhheecCcE------EeCCCCCCCCCHHHHHH-------------------------------------Hc
Confidence 3 3789999999999999 99999999999999998 89
Q ss_pred CchHHHHHHHhccCccccccccHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHH
Q 001289 758 GTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRT 837 (1107)
Q Consensus 758 GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r~f~nKl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v 837 (1107)
|||++|||+++.++.++|++|+.+.+.+.++|++||||+++|.+++.. .+.+ .....|+|++++|+.+++.+
T Consensus 589 gaD~lRl~l~~~~~~~~d~~~s~~~l~~~~~~l~kl~~~~~~~~~~~~-~~~~-------~~~~~D~~il~~l~~~i~~v 660 (805)
T PRK00390 589 GADTARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVVDAKGEAG-ALDV-------AALSEDKELRRKLHKTIKKV 660 (805)
T ss_pred ChHHHHHHHHhcCCccCCcccCHHHHHHHHHHHHHHHHHHHHhhhccc-ccCc-------ccChhhHHHHHHHHHHHHHH
Confidence 999999999998899999999999999999999999999999654432 1211 23468999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhC
Q 001289 838 ASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRL 917 (1107)
Q Consensus 838 ~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L 917 (1107)
+++|++|+|+.|++.+++|+ +++..+| + +.++.+|+.+++.+++||||||||+|||||+.|
T Consensus 661 ~~~~e~~~f~~ai~~l~~f~-n~lsk~~-~-----------------~~~~~~l~~~l~~l~~lLaPf~P~iaEElw~~L 721 (805)
T PRK00390 661 TEDIERLRFNTAIAALMELV-NALYKAE-D-----------------EQDKAVLREALEILVRLLAPFAPHLAEELWEKL 721 (805)
T ss_pred HHHHHcCCHHHHHHHHHHHH-HHHHHHH-H-----------------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHc
Confidence 99999999999999999998 5666655 1 134679999999999999999999999999999
Q ss_pred CCCCCCCCCCcceeccCCCCCCCCCcHHHHHHHHHHHHHHHH
Q 001289 918 PQPKGCATKESIMLCEYPSAVEGWTDERAEFEMDLVESTVRC 959 (1107)
Q Consensus 918 ~~~~~~~~~~SI~~a~~P~~~~~~~d~~~e~~~e~v~~vi~~ 959 (1107)
+. .+||+.++||++++.+. .+..++.+.+++++
T Consensus 722 ~~------~~sv~~~~wP~~~~~~~---~~~~~~~~iqingk 754 (805)
T PRK00390 722 GH------EGSIANAPWPTADEAAL---VEDEVTIVVQVNGK 754 (805)
T ss_pred CC------CCeeEecCCCCCCHHHh---hhhccEEEEEEccc
Confidence 74 36899999999876543 33345555555553
No 24
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=5.5e-133 Score=1253.03 Aligned_cols=642 Identities=26% Similarity=0.392 Sum_probs=534.5
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCcccCC--CCCCCcEEEECCCCCCCCC-CCchhhHHhHHHHHHHHHHHhcCCeeeecc
Q 001289 143 MAKEYNPSSVEKSWYSWWENSGYFIADN--KSSKPSFVIVLPPPNVTGA-LHIGHALTTAIQDTIIRWRRMSGYNALWVP 219 (1107)
Q Consensus 143 ~~~~y~p~~vE~~w~~~W~~~~~f~~~~--~~~k~~f~i~~pPPyvnG~-LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~ 219 (1107)
+++.|||.+||++||++|+++++|+... +.++++|+|++|||||||. |||||+++++++|+++||+||+||+|+|++
T Consensus 76 ~~~~y~~~~iE~kwq~~W~e~~~f~~~~~~~~~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~ 155 (963)
T PLN02563 76 AKRAYPFHEIEPKWQRYWEENRTFRTPDDVDTSKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPM 155 (963)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccc
Confidence 5678999999999999999999999865 4567899999999999997 999999999999999999999999999999
Q ss_pred CCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHH
Q 001289 220 GMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAF 299 (1107)
Q Consensus 220 G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F 299 (1107)
||||||+|+|..+++ .|.+ +.+|+.++++.|++||++||+|+||+|+++||||.|+++|+|+|
T Consensus 156 G~D~~GlPiE~~a~~-----~g~~------------p~~~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F 218 (963)
T PLN02563 156 GWDAFGLPAEQYAIE-----TGTH------------PKITTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQWIF 218 (963)
T ss_pred cccccCcHHHHHHHH-----cCCC------------hHHhHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHHHHH
Confidence 999999999876643 4544 35789999999999999999999999999999999999999999
Q ss_pred HHHHHcCCEEEeeeeeeecCCCCccccccccccc--ccCCc---------ceeeecCcccccccc---------------
Q 001289 300 VRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYV--DIPKR---------EMRNVPGYEKQVEFG--------------- 353 (1107)
Q Consensus 300 ~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~--e~~~~---------t~~~vp~y~~~~~~g--------------- 353 (1107)
.+||++|||||+.++|||||.|+|+||++||++. +..+. .+++++.|++.+.-|
T Consensus 219 ~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~wp~~v~~~q~ 298 (963)
T PLN02563 219 LQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLDWPESIKEMQR 298 (963)
T ss_pred HHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhhcCCCHHHHHHHH
Confidence 9999999999999999999999999999999863 33333 356777777554322
Q ss_pred ------eEEEEeeecCC-----CcceEEEeeccccccccCcEEEEcCCCc---------------cccc-----------
Q 001289 354 ------VLTSFAYPLEG-----GLGEIVVATTRVETMLGDTAIAIHPEDA---------------RYSH----------- 396 (1107)
Q Consensus 354 ------~l~~~~y~l~~-----~~~~i~vaTTrPeT~~gdtaiaV~P~d~---------------ry~~----------- 396 (1107)
..++++|++.+ .+.+|+|||||||||+|+++|||||+++ +|.+
T Consensus 299 nwiG~s~g~~i~F~~~~~~~~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~~~~~~~~~~v~~y~~~~~~~~~~~~~ 378 (963)
T PLN02563 299 NWIGRSEGAELDFSVLDGEGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTTAEQKEAVEEYVDAASRKSDLERT 378 (963)
T ss_pred HhccccceEEEEEEecCccccCCCCEEEEEeCCChHHhhccEEEECCCChhhHhhhcccchHHHHHHHHHHhchhHHhhh
Confidence 14678888865 2468999999999999999999999996 3321
Q ss_pred ---------ccCcEEecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCC-----------
Q 001289 397 ---------LHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTD----------- 456 (1107)
Q Consensus 397 ---------l~Gk~~~~P~~~~~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~----------- 456 (1107)
+.|++++||++++.+||+.+++ |++++||||||+|||||++||++|++||||++++|+.
T Consensus 379 ~~~~~k~g~~~g~~~~~P~~~~~iPI~~ad~-V~~~~GTGaVm~~PaHd~~D~~~a~k~~Lpi~~vI~~~d~~~~~~~~~ 457 (963)
T PLN02563 379 ELQKEKTGVFTGSYAINPATGEAIPIWVADY-VLGSYGTGAIMAVPAHDTRDFEFAQKFDLPIKWVVKPADGNEDDAEKA 457 (963)
T ss_pred hccceecccccCcEEeccCCCCeeEEEEecc-cCCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeccCcccccccccc
Confidence 4699999999999999999995 9999999999999999999999999999999999942
Q ss_pred ---CCccccCCC---CCCCCCChhhHHHHHHHHHHHcCCeeceeccccccceeccCCCeeEecccccccccccHHHHHHH
Q 001289 457 ---DGKINSNGG---LEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEAL 530 (1107)
Q Consensus 457 ---dG~~~~~~g---~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~ 530 (1107)
+|+|. |.| ..|.||.+++||++|++.|++.|++.+
T Consensus 458 y~~~G~l~-ns~~~~~~~~Gl~~~eA~~~Ii~~L~~~g~~~~-------------------------------------- 498 (963)
T PLN02563 458 YTGEGVIV-NSSSSGLDINGLSSKEAAKKVIEWLEETGNGKK-------------------------------------- 498 (963)
T ss_pred ccCceeEe-cCCCcccccCCcCHHHHHHHHHHHHHhCCCCCC--------------------------------------
Confidence 34443 334 139999999999999999999998521
Q ss_pred HhhhccCCCceEEeccccHHHHHHHhccCCCeeeeecCCCcccceeEEEccCcch-------hhccCC--------CCCc
Q 001289 531 YAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDE-------LKELGS--------YNDH 595 (1107)
Q Consensus 531 ~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~-------~~~~~~--------~~~~ 595 (1107)
.+++ +++|||||||||||+|||+|||..|+.. ++...+ ..+.
T Consensus 499 ---------~v~y--------------~lrDW~ISRQRyWG~PIPi~~c~~cg~~v~v~e~~Lpv~lpe~~~~~~~~~g~ 555 (963)
T PLN02563 499 ---------KVNY--------------KLRDWLFARQRYWGEPIPVVFLEDSGEPVPVPESDLPLTLPELDDFTPTGTGE 555 (963)
T ss_pred ---------eeEe--------------cCCCceEeeecccCCceEEEEEcCCCcEEecchHhCcccchhhhhcccCCCCC
Confidence 1222 5899999999999999999999887631 111000 1122
Q ss_pred eEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCCCh------hhhhhCCcCccccccccc---
Q 001289 596 WIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTD------DLKAFYPTSVLETGHDIL--- 666 (1107)
Q Consensus 596 w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~~~~------d~~~~yP~dl~~tG~Dil--- 666 (1107)
|.. ..+..+....||.|+..++|++|||||||+|+|++ ..+.||+++. .+++|||+|++++|.|+.
T Consensus 556 ~pl----~~~~~~~~~~~p~cg~~~~RetDtmDtw~~Sswy~-~r~~~p~~~~~~~~~~~~~~w~PvD~yigG~dhailH 630 (963)
T PLN02563 556 PPL----AKAVSWVNTVDPSSGKPARRETNTMPQWAGSCWYY-LRFMDPKNSNALVDKEKEKYWMPVDLYVGGAEHAVLH 630 (963)
T ss_pred Cch----hcchhhhcCcCcCCCCCcEECCCcCCchhhccHHH-HHHhCCCccccccCHHHHhCcCCCcEeeccHHHHhhH
Confidence 221 11223344457777778999999999999998654 4456888642 346799999999999983
Q ss_pred ----chHHHHHHHHHHHhcCCCCccEEEEcceeeC---------CCCc--------------------------------
Q 001289 667 ----FFWVARMVMLGIKLGGEVPFTKVYLHPMIRD---------AHGR-------------------------------- 701 (1107)
Q Consensus 667 ----~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D---------~~G~-------------------------------- 701 (1107)
|||+.+|.++|+ +.++.||++|++||||+| .+|+
T Consensus 631 LlY~Rfw~~~l~~~g~-~~~~ePfk~ll~qGmVl~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (963)
T PLN02563 631 LLYARFWHKVLYDIGV-VSTKEPFQCLVNQGMILGEVEYTAFKDSDGEYVSADTADRLGELQQEKIPEEKVIKSGDSFVL 709 (963)
T ss_pred hHHHHHHHHHHHHhhc-cCCcccHHHHhccceeecCccccceecCCCcCccccccccccccccccccccccccccccccc
Confidence 899999999999 578999999999999998 7888
Q ss_pred -------------cccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHh
Q 001289 702 -------------KMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVS 768 (1107)
Q Consensus 702 -------------KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~ 768 (1107)
|||||+||||||.++|+ +||||+||||+++
T Consensus 710 ~~~~~~~~~~~~eKMSKSKGNvVdP~eiI~-------------------------------------kYGADaLRl~ll~ 752 (963)
T PLN02563 710 KDDPSIRLIARAHKMSKSRGNVVNPDDVVS-------------------------------------EYGADSLRLYEMF 752 (963)
T ss_pred ccCCcccccccccccccccCCcCCHHHHHH-------------------------------------HcCcHHHHHHHHh
Confidence 99999999999999999 8999999999999
Q ss_pred ccCccccccccHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHH
Q 001289 769 YTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSD 848 (1107)
Q Consensus 769 ~~~~~~Dinf~~~~v~~~r~f~nKl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~ 848 (1107)
.++..+|.+|+.+.+.+.++|++++||++...... ...+.+.. .......|+|++++|+.+++.++++|++|+|+.
T Consensus 753 ~ap~~dd~~w~~~~V~g~~rfL~rlwn~~~~~~~~-~~~~~~~~---~~~~~~~d~~ll~kl~~~ikkVte~~e~y~Fnt 828 (963)
T PLN02563 753 MGPLRDSKTWSTSGVEGVHRFLGRTWRLVVGAPLP-DGSFRDGT---VVTDEEPSLEQLRLLHKCIAKVTEEIESTRFNT 828 (963)
T ss_pred CCCcccccccCHHHHHHHHHHHHHHHHHHHHhhhc-ccccCccc---cccCCcchHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999998654211 11122111 011235699999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCc
Q 001289 849 AASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKES 928 (1107)
Q Consensus 849 a~~~i~~f~~~~l~d~Yie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~S 928 (1107)
|++++|+|+ +.+++++ .+++.+++.+++||||||||+|||||++|+. .+|
T Consensus 829 Ai~~lmef~-n~l~~~~-----------------------~~~~~~l~~ll~LLaPf~PhiaEELW~~Lg~------~~s 878 (963)
T PLN02563 829 AISAMMEFT-NAAYKWD-----------------------KVPREAIEPFVLLLSPYAPHLAEELWFRLGH------SNS 878 (963)
T ss_pred HHHHHHHHH-HHHhCch-----------------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHcCC------CCe
Confidence 999999997 4443210 1346789999999999999999999999974 269
Q ss_pred ceeccCCCCCCCC
Q 001289 929 IMLCEYPSAVEGW 941 (1107)
Q Consensus 929 I~~a~~P~~~~~~ 941 (1107)
|+.++||++++.+
T Consensus 879 v~~~~WP~~d~~~ 891 (963)
T PLN02563 879 LAYEPWPEANPSY 891 (963)
T ss_pred eeeCCCCCCCHHH
Confidence 9999999987643
No 25
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.2e-128 Score=1109.52 Aligned_cols=790 Identities=23% Similarity=0.338 Sum_probs=654.2
Q ss_pred CCCCccCCCCCcccccccchhhhcCCCchhHHHHHHHHHHhcCCcccCCC-CCCCcEEEECCCCCCCCCCCchhhHHhHH
Q 001289 122 NAEEFVDPETPLGEKKRMSKQMAKEYNPSSVEKSWYSWWENSGYFIADNK-SSKPSFVIVLPPPNVTGALHIGHALTTAI 200 (1107)
Q Consensus 122 ~~~~~~~~~t~~~~k~~~~~~~~~~y~p~~vE~~w~~~W~~~~~f~~~~~-~~k~~f~i~~pPPyvnG~LHiGHal~~~i 200 (1107)
-....++|+| +.+-|.. ..+.+..+-|+...++..... ..++.|++++ +||.||||||+|.++
T Consensus 17 ys~T~~lpKt--~v~~Ns~----------gr~~q~~evi~~~~~~~~qls~~q~~~f~L~d----anG~lhlghalnkIL 80 (937)
T KOG0433|consen 17 YSITSHLPKT--LVHFNST----------GRIGQVIEVIQPPEILSSQLSDQQRVEFELKD----ANGNLHLGHALNKIL 80 (937)
T ss_pred ceeecCCCCC--ccccccc----------cchHHHHHHhCChHHHHHHHhhccCceEEEec----cCCCccchHHHHHHH
Confidence 3346678888 4454443 344445566666555554433 4557899999 999999999999999
Q ss_pred HHHHHHHHHhcCCeeeeccCCCccChhHHH-HHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 001289 201 QDTIIRWRRMSGYNALWVPGMDHAGIATQV-VVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLD 279 (1107)
Q Consensus 201 ~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~-~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~D 279 (1107)
+|++.||+-++|++|+++|||||||||++. ++-+.+..++ ..++.-+.+.+++.++++.++++++.|+|+|+..|
T Consensus 81 kdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~~----~~~s~leiR~~Ar~fA~~AIk~Q~e~F~r~gv~aD 156 (937)
T KOG0433|consen 81 KDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESE----GSRTPLEIRAKARIFADEAIKKQMEAFRRWGVTAD 156 (937)
T ss_pred HHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhcc----ccCCcHHHHHHHHHHHHHHHHHHHHHHHHheeecc
Confidence 999999999999999999999999999994 5554442222 34566788899999999999999999999999999
Q ss_pred cCCccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCcccccccccccccCCcceeeecCcccccccceEEEEe
Q 001289 280 WSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFA 359 (1107)
Q Consensus 280 W~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~e~~~~t~~~vp~y~~~~~~g~l~~~~ 359 (1107)
|.+.|.||||+|..+..++|.+||++|||||+.+||+|+|+.+|||++.|+||.+.+..+ -.||+
T Consensus 157 W~n~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~KPVyWSpSSRTALAEaELEYn~nH~S~---------------S~Y~~ 221 (937)
T KOG0433|consen 157 WENPYVTKSPSYEAAQLDIFAKLYEKGLVYRSFKPVYWSPSSRTALAESELEYNDNHQST---------------SAYFR 221 (937)
T ss_pred CCCceeecChHHHHHHHHHHHHHHhccceeccCCcceecCcchhhhhhhhccCCcCCcce---------------eEEEE
Confidence 999999999999999999999999999999999999999999999999999998876543 35788
Q ss_pred eecCCC------------cceEEEeeccccccccCcEEEEcCCCcc-------------c--------------------
Q 001289 360 YPLEGG------------LGEIVVATTRVETMLGDTAIAIHPEDAR-------------Y-------------------- 394 (1107)
Q Consensus 360 y~l~~~------------~~~i~vaTTrPeT~~gdtaiaV~P~d~r-------------y-------------------- 394 (1107)
|||.+. ..++.||||+|||||+|.||+|||+-.+ |
T Consensus 222 F~L~~~S~~~~~~~~~~~~iyaLVWTTTPWTlPsN~Ai~~n~~~~Yslv~~~~~~~~~~ylvas~L~~~fe~~~~~k~~i 301 (937)
T KOG0433|consen 222 FKLINFSSSAHSEDSKIPQIYALVWTTTPWTLPSNNAISVNSAIQYSLVQFDNNPTSTFYLVASKLLEEFEKSSDRKCKI 301 (937)
T ss_pred EeccCCccccccCCCccCcEEEEEEeCCCccccccceeeeccccceEEEEeccCCcceEEEEccchhhhhhhhcCcceee
Confidence 888542 2589999999999999999999999541 1
Q ss_pred ------ccccCcEEecCCC-CCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCCC
Q 001289 395 ------SHLHGKFAIHPFN-GRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLE 467 (1107)
Q Consensus 395 ------~~l~Gk~~~~P~~-~~~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~ 467 (1107)
.+|.|.+|.||+. ....|++.++ ||+++.|||+||++||||++||.+|-.+||++.+.+|++|+++.++|+.
T Consensus 302 ~~t~~g~~L~~~~Y~~pl~~~~~~P~l~g~-hVT~~~GTGLVHTAP~HG~eDYlv~l~~~l~~~s~VD~~G~yT~ea~~~ 380 (937)
T KOG0433|consen 302 VGTVKGANLIGRRYKHPLHNELGLPILEGP-HVTDTVGTGLVHTAPAHGFEDYLVAISKGLRVESFVDSRGCYTREAGHD 380 (937)
T ss_pred eeecchhhccCceecCcCccccCCcccccc-ceecCcccceeecCCCCChHHHHHHhhcCCCcccccCCCCceecccccc
Confidence 2688999999974 5779999988 5999999999999999999999999999999999999999999999988
Q ss_pred CCCCChhh-HHHHHHHHHHHcCCeeceeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEecc
Q 001289 468 FEGMPRFK-AREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPR 546 (1107)
Q Consensus 468 f~Gl~~~~-ar~~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~ 546 (1107)
+.|+.+.+ ..+.|+..|. ..+++.+++.|+||+.|||+.|++.|.++|||+++++++..|.+++ ++++|+|.
T Consensus 381 l~Gk~VL~eG~k~vl~~l~--~~iv~~sky~HsYPYDWRTKKPvIiRAseQWFi~~e~~k~~A~~al-----~~Vk~~P~ 453 (937)
T KOG0433|consen 381 LDGKEVLGEGQKIVLRLLN--HDIVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDVEEIKKRASMAL-----DDVKVAPG 453 (937)
T ss_pred cccchhhccccHhHHHHHh--hhhhhhhcccccCCcccccCCceEEecchhheeeHHhhhhHHHHHH-----hhceeCCc
Confidence 99999875 6678888888 6788999999999999999999999999999999999999999999 78999999
Q ss_pred ccHHHHHHHhccCCCeeeeecCCCcccceeEEEccCcchhhc-----------cCCCCCceEEecCHHHHHHHHhhhcCC
Q 001289 547 QYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKE-----------LGSYNDHWIVARDEKEALAVANKKFSG 615 (1107)
Q Consensus 547 ~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~-----------~~~~~~~w~~~~~~~ea~~~~~~~~~~ 615 (1107)
....++..+|..+.+|||||||.||+|||++|....+..+.. ...+.+.|+....++-..++.....|.
T Consensus 454 ~~~~rl~~~~~~R~~WCISRQR~WGvPIP~ly~k~~~~~l~ns~~~~h~~~~~eqeGsD~Ww~~~~eellpe~~~~e~~~ 533 (937)
T KOG0433|consen 454 DSDLRLKQLVTTRPSWCISRQRVWGVPIPALYDKNGGSYLSNSLIEWHAKLTREQEGSDVWWEIDVEELLPEEEVREIPD 533 (937)
T ss_pred chHHHHHHHHcCCCcceeeeccccCCcceeEEecCCCceeehHHHHHHHHHHHHHhCCcceEeCChhHhCcHhhhcccch
Confidence 999999999999999999999999999999998765442210 112346777665554333333333444
Q ss_pred CCcccccCCCceeeEeccCCcccccccCCCCChhhhhhCCcCcccccccccchHHHHHHHHHHHhcCCCCccEEEEccee
Q 001289 616 KKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMI 695 (1107)
Q Consensus 616 ~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~~~~d~~~~yP~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v 695 (1107)
....+.+.+|+||+|||||..+-.+++- +.=.+.|++.+|.||+++||++.++++.+..+++||++|++|||+
T Consensus 534 ~a~ey~kgtDimDVWFDSGssWs~v~~~-------~~~~~aDv~LEG~DQ~rGWFQSsLLTsvA~q~kAPYk~vivHGFt 606 (937)
T KOG0433|consen 534 IASEYKKGTDIMDVWFDSGSSWSAVLDN-------EREHVADVYLEGVDQFRGWFQSSLLTSVAVQNKAPYKKVIVHGFT 606 (937)
T ss_pred hHHHhccCCceeeeEecCCCcceeecCC-------CCCcceeeEEecchhcchHHHHHHHHHHHHhccCCchheeeeeeE
Confidence 4456888999999999999977666652 122578999999999999999999999999999999999999999
Q ss_pred eCCCCccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccc
Q 001289 696 RDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDK 775 (1107)
Q Consensus 696 ~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~D 775 (1107)
+|++|.|||||+||||||..||+|. + + -|.||||+||||++. +....|
T Consensus 607 lDE~G~KMSKSlGNVidP~~v~~G~-~-------------------------k-----~payGaD~LR~WVA~-~~~t~d 654 (937)
T KOG0433|consen 607 LDENGNKMSKSLGNVVDPTMVTDGS-L-------------------------K-----QPAYGADGLRFWVAG-SENTGE 654 (937)
T ss_pred ecCCccchhhcccCcCCHHHHhCCc-c-------------------------c-----CCCccccceeeeeec-ccccCc
Confidence 9999999999999999999999961 1 1 258999999999885 555569
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCC-CCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001289 776 INLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPP-LKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVY 854 (1107)
Q Consensus 776 inf~~~~v~~~r~f~nKl~N~~rf~l~~l~~~~~p~-~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~ 854 (1107)
+....+.+.....-+.|++|++||+++++.+ |++. ..++...+..+|+++|.+|+.+++++.+.|++|+|+++++.+.
T Consensus 655 ~~iGp~il~qv~e~l~K~R~T~RfllGnl~d-~~~~~~~~p~~dl~~iDq~~L~ql~~~~~~i~e~Y~~Y~f~kVv~~lq 733 (937)
T KOG0433|consen 655 SKIGPKILDQVDEKLIKFRNTFRFLLGNLQD-FDGKQVKFPLKDLRYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQ 733 (937)
T ss_pred eecCHHHHHHHHHHHHHHHhHHHHHhhcccc-cCCccccccchhhhhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999999999999999999999976 6655 4455667888999999999999999999999999999999999
Q ss_pred HHHHHhHhHHHHHhhcccccCC--CcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCcceec
Q 001289 855 SWWQYQFCDVFIEAIKPYFAGD--NPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLC 932 (1107)
Q Consensus 855 ~f~~~~l~d~Yie~~K~~l~~~--~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~a 932 (1107)
.|+.++++++|++.+|++|+++ ++. .|+++++||++++..+++.++||+||++||+||.||... +-++..
T Consensus 734 ~F~~~~lSa~YfdivKDRLY~~~~~s~---~rrs~QttL~h~l~~l~~~iaPIlP~LaeEvwq~lP~~~-----~~~f~~ 805 (937)
T KOG0433|consen 734 QFLQRNLSAFYFDIVKDRLYCDKVGSE---SRRSAQTTLHHLLHNLAHIISPILPHLAEEVWQHLPGSH-----EKIFRL 805 (937)
T ss_pred HHHHHHhhHHHHHHHhhhhhcCCCCcH---HHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhCCCCC-----Cccccc
Confidence 9999999999999999999987 444 899999999999999999999999999999999999432 228999
Q ss_pred cCCCCCCCCCcHHHHHH--HHHHHHHHHHHHHHHHHhhc-cCCCCcccEEEEecChhHHHHHHHHHHHHHhhhccceEE
Q 001289 933 EYPSAVEGWTDERAEFE--MDLVESTVRCIRSLRAEVLG-KQKNERLPAIAFCQTKGVSEIIRSHELEIVTLSTSSSLK 1008 (1107)
Q Consensus 933 ~~P~~~~~~~d~~~e~~--~e~v~~vi~~iRslr~~~~~-k~i~~~~~~~I~~~~~~~~~~l~~~~~~I~~L~~v~~v~ 1008 (1107)
.||..++.|..+..+.. +.+++++-...-+...-..+ +.++..+++++....+ .-....|..+++.+.++
T Consensus 806 k~~~l~s~~~~~~~~~~~~~~~vl~~~~~~~~~l~la~~~~~~~s~L~~~~~~ht~------~~~~~~L~~~l~~~~~~ 878 (937)
T KOG0433|consen 806 KWEDLHSGLLTPHDQLSKHMKFVLEVRNELESTLGLAIDTSKKGSVLQVTPEYHTI------RIYESELPELLNVSQVI 878 (937)
T ss_pred CccccchhhcCchhHHHHHHHHHHHHHHhHHHHHHhhhhhhhccceEEEEEeeccc------ccchhHHHHHHHHhhhh
Confidence 99999998887665554 55555544333222111100 1334555666554433 11223455555555443
No 26
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-124 Score=1063.22 Aligned_cols=786 Identities=23% Similarity=0.383 Sum_probs=685.9
Q ss_pred hcCCCchhHHHHHHHHHHhcCCcccCC--CCCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCC
Q 001289 144 AKEYNPSSVEKSWYSWWENSGYFIADN--KSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 221 (1107)
Q Consensus 144 ~~~y~p~~vE~~w~~~W~~~~~f~~~~--~~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~ 221 (1107)
++.+|+..-|.+..++|.+.+.|+... .+++|+|.+.++||++||-+|.||.|+.||+|++.||.-|+||.|-..+||
T Consensus 5 ~~n~nfp~eEEkvle~W~e~~aF~~slk~sk~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGW 84 (1070)
T KOG0434|consen 5 PENFNFPKEEEKVLEFWREIDAFHTSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGW 84 (1070)
T ss_pred cccCCCchhHHHHHHHHHHhhHHHHHHHhhCCCCceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceeeeccc
Confidence 566888889999999999999998764 367899999999999999999999999999999999999999999999999
Q ss_pred CccChhHHHHHHHHHHHHhCCCcc----ccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHH
Q 001289 222 DHAGIATQVVVEKKLMRERKLTRH----DIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTE 297 (1107)
Q Consensus 222 D~~Gi~~q~~vEk~l~~~~g~~~~----d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~ 297 (1107)
||||+|++..+.|+| |++.. .+|.+++..+|+..+-.|...+++...|||-|+|+++-|.||+|.|.+.|+|
T Consensus 85 D~HGlPVE~eIDKkL----gI~g~~dV~kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWw 160 (1070)
T KOG0434|consen 85 DTHGLPVEYEIDKKL----GITGRDDVMKMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWW 160 (1070)
T ss_pred ccCCCccceeechhc----CCCCHHHHHHHhHHhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHH
Confidence 999999888888765 66643 3799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEeeeeeeecCCCCcccccccc--cccccCCcceeeecCcccccccceEEEEeeecCC-CcceEEEeec
Q 001289 298 AFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEV--DYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEG-GLGEIVVATT 374 (1107)
Q Consensus 298 ~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EV--e~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~-~~~~i~vaTT 374 (1107)
+|.+||++|++|||.+...||..|.|+|||-|- .|+|+.+|.. .+.||+.+ ....++.|||
T Consensus 161 vFkeL~~kglVYRG~kVMP~STac~TPLSNFEa~QNYKdV~DPav----------------~v~F~li~~~~~slvAWTT 224 (1070)
T KOG0434|consen 161 VFKELHEKGLVYRGFKVMPYSTACTTPLSNFEAQQNYKDVPDPAV----------------FVAFPLIGDPNVSLVAWTT 224 (1070)
T ss_pred HHHHHHhcCceecceeeeccccccCCcccchhcccCcccCCCCeE----------------EEEeeccCCcceeEEEEec
Confidence 999999999999999999999999999999887 4889988753 36788755 4568999999
Q ss_pred cccccccCcEEEEcCCCcc----------------------c----------------ccccCcEEecCCC-------CC
Q 001289 375 RVETMLGDTAIAIHPEDAR----------------------Y----------------SHLHGKFAIHPFN-------GR 409 (1107)
Q Consensus 375 rPeT~~gdtaiaV~P~d~r----------------------y----------------~~l~Gk~~~~P~~-------~~ 409 (1107)
+|||+|+|.|+||||+..+ | +.|.|++|..+|. ..
T Consensus 225 TPWTLPSNlal~Vnp~~~Yvki~dk~~~k~yil~esrl~~l~k~~~~~~~eiler~~G~~L~g~kYeplF~YF~~~~~~~ 304 (1070)
T KOG0434|consen 225 TPWTLPSNLALCVNPDFQYVKIKDKTTGKKYILMESRLGELYKNPKNDNYEILERFQGAALVGLKYEPLFPYFAETFEEG 304 (1070)
T ss_pred CCccCccceeEEEcCCeEEEEEEeccCCeEEEEeHHHHHHHhcCcccccHHHHHhcccccccCcccCccchHHHHHhccC
Confidence 9999999999999999531 2 3688999987763 34
Q ss_pred ccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCC-----ccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHH
Q 001289 410 KIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNL-----EFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEAL 484 (1107)
Q Consensus 410 ~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L-----~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L 484 (1107)
...|++|++ |+.+.|||+||++||.|..||.+|...|+ -++|++|++|+++.+.. .|+|.-+.||.+.||+.|
T Consensus 305 aFrvl~d~y-Vt~~sGTGiVH~AP~FGe~Dy~~c~~~giI~~d~~~~cpVDe~G~~Tsev~-dfaG~YVKDaDK~Ii~~l 382 (1070)
T KOG0434|consen 305 AFRVLSDDY-VTEDSGTGIVHQAPAFGEEDYRACVANGIIRKDSLPPCPVDESGLFTSEVT-DFAGQYVKDADKLIIRSL 382 (1070)
T ss_pred ceEEeccCc-EecCCCceeeecCCccChhhHHHHHHcCcccCCCCCCCccccCCccccccc-cccceeeccchHHHHHHH
Confidence 578999995 99999999999999999999999998876 56899999999999998 999999999999999999
Q ss_pred HHcCCeeceeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccH-HHHHHHhccCCCee
Q 001289 485 KKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYT-AEWRRWLEAIRDWC 563 (1107)
Q Consensus 485 ~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~-~~~~~wl~~l~DWc 563 (1107)
++.|.++......|+||+||||.+|+++++.|.||++++.+.+++++.. .+..|+|...+ ++|.+||+|.|||.
T Consensus 383 k~~g~lv~~~~i~HsYPFCWRSDTPLiYraVPsWFVrVk~~v~~ll~nn-----~~t~WVP~~ikeKRF~NWL~nARDW~ 457 (1070)
T KOG0434|consen 383 KASGRLVKASQITHSYPFCWRSDTPLIYRAVPSWFVRVKNIVDQLLRNN-----MKTHWVPQNIKEKRFANWLKNARDWN 457 (1070)
T ss_pred HhcCceeeeeeeeeccCceecCCChHHHhhccHhhhhHHHHHHHHHhcc-----cccccCChhhhHHHHHHHHhhhhhcc
Confidence 9999999999999999999999999999999999999999999999855 78899999875 79999999999999
Q ss_pred eeecCCCcccceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHh-------------hhcCC--CCcccccCCCcee
Q 001289 564 VSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVAN-------------KKFSG--KKFEMCQDPDVLD 628 (1107)
Q Consensus 564 ISRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~-------------~~~~~--~~~~l~~d~DvlD 628 (1107)
|||.|+||+|||.|...+-. +.-++| +..|..+-.. -..|. .+..+.|.++|+|
T Consensus 458 iSRnR~WGTPIpLWVSdD~e----------evVcig-Si~eLEeLSG~kItDlHRe~iD~itIps~~gkg~l~Rv~eVfD 526 (1070)
T KOG0434|consen 458 ISRNRYWGTPIPLWVSDDYE----------EVVCIG-SIKELEELSGVKITDLHRESIDHITIPSKKGKGVLHRVSEVFD 526 (1070)
T ss_pred cccccccCCCcceEEccCCc----------eEEEec-cHHHHHHhcCCcchhhhhhhcCceecccCCCCcceehhhhHhh
Confidence 99999999999999764321 111111 2222211100 11233 2357899999999
Q ss_pred eEeccCCcccccccCCCC-ChhhhhhCCcCcccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccC
Q 001289 629 TWFSSGLFPLSVLGWPDD-TDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSL 707 (1107)
Q Consensus 629 tWFdSgl~p~s~lgwp~~-~~d~~~~yP~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSl 707 (1107)
.||.||.+|++..+||.+ ++.|+.-||+|+.-+|-||.++||..++.++.+|+|+.||++|+|+|+|+.++|+|||||+
T Consensus 527 CWFESGSMPYAq~HyPFenk~~fe~~fPadFIaEGlDQTRGWFYTL~VlsT~LF~kppfkNvIvnGlVLAeDG~KMSKrl 606 (1070)
T KOG0434|consen 527 CWFESGSMPYAQRHYPFENKEEFEENFPADFIAEGLDQTRGWFYTLLVLSTALFGKPPFKNVIVNGLVLAEDGKKMSKRL 606 (1070)
T ss_pred hhhccCCCcchhhcCCccchHHHhhcCchHhhhhccccccchhhHHHHHHHHHcCCCcchheeEeeeEEecccHHHhhhh
Confidence 999999999999999985 5689999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccC-ccccccccHHHHHHH
Q 001289 708 GNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTA-QSDKINLDIQRVVGY 786 (1107)
Q Consensus 708 GNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~-~~~Dinf~~~~v~~~ 786 (1107)
-|.-||..||+ +|||||||+||+++.. ......|..+.+.+.
T Consensus 607 kNYPdP~~iin-------------------------------------kYGADalRlYLInSPVvraE~LkFkeeGVrev 649 (1070)
T KOG0434|consen 607 KNYPDPSLIIN-------------------------------------KYGADALRLYLINSPVVRAENLKFKEEGVREV 649 (1070)
T ss_pred hcCCCHHHHHH-------------------------------------hhcchheeeeeecCccccccccccchhhHHHH
Confidence 99999999999 9999999999997643 467889999888775
Q ss_pred -HHHHHHHHHHHHHHhhhhC-------CCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001289 787 -RQWCNKLWNAVRFSMSKLG-------EGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQ 858 (1107)
Q Consensus 787 -r~f~nKl~N~~rf~l~~l~-------~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~ 858 (1107)
...+--+||+++|..++.. ..|++...+ ...+.+|+||++..+.++.-+++-|++|++..++-.+..|+
T Consensus 650 vk~v~lPW~NsyrF~~qn~~~~~~~~g~~f~~~~~~--~S~NvmDrWI~a~~qslv~fv~~eM~~YrLytVvp~llkfi- 726 (1070)
T KOG0434|consen 650 VKDVLLPWYNSYRFLVQNAALLKKETGKDFVFDDSV--TSSNVMDRWILASTQSLVGFVREEMDQYRLYTVVPRLLKFI- 726 (1070)
T ss_pred HHhhhhhhhHHHHHHHHHHHHhccccCCcccccccc--ccchhHHHHHHHHHHHHHHHHHHHHHheehhhhHHHHHHHH-
Confidence 4467789999999987642 234443322 25568999999999999999999999999999999999998
Q ss_pred HhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCC----CCCCCcceeccC
Q 001289 859 YQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKG----CATKESIMLCEY 934 (1107)
Q Consensus 859 ~~l~d~Yie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~----~~~~~SI~~a~~ 934 (1107)
+++.||||...+.++.+++..- +...|..+|+.+|-++.++|+||+||+||.|||+|...-+ ..+..|||...|
T Consensus 727 D~LTNwYiR~nRrrlkGe~G~~--d~~~AL~~Lf~vL~t~~r~MaPfTPF~tE~iyq~Lk~~~~~~~~~~~~~SVHfl~~ 804 (1070)
T KOG0434|consen 727 DELTNWYIRFNRRRLKGENGEH--DCHNALNVLFEVLFTLVRVMAPFTPFFTEYIYQNLKKYIPIDKNEKSERSVHFLSY 804 (1070)
T ss_pred HHhhhhheehhhhhhcCCCchH--HHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhcCCccccCCccceeEEeec
Confidence 9999999999999998764431 5567899999999999999999999999999999964321 134679999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc---EEEEecChhHHHHHHHHHHHHHhhhccceEEEec
Q 001289 935 PSAVEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQKNERLP---AIAFCQTKGVSEIIRSHELEIVTLSTSSSLKVLL 1011 (1107)
Q Consensus 935 P~~~~~~~d~~~e~~~e~v~~vi~~iRslr~~~~~k~i~~~~~---~~I~~~~~~~~~~l~~~~~~I~~L~~v~~v~i~~ 1011 (1107)
|.+.++.+|+.+|..++.++.||..+|.+|... +|+.+.+ +.|..++++..+.+..+..+|..-+||.++.+..
T Consensus 805 P~~~~~~~de~ve~~v~~m~siIdl~R~iRern---~islKtPLK~~ivi~~d~~~ledik~l~~yI~eElNVr~v~~~~ 881 (1070)
T KOG0434|consen 805 PTPKEELIDETVERRVERMQSIIDLARNIRERN---TISLKTPLKELIVIHSDEEYLEDIKSLERYILEELNVREVVFTS 881 (1070)
T ss_pred CCchhhhccchHHHHHHHHHHHHHHHHHHhhcc---CCcccCchhheEEEcCCHHHHHHHHHHHHHHHHhhcceeeeecc
Confidence 999999999999999999999999999999998 7744433 4555667777788888999999889999987764
Q ss_pred c
Q 001289 1012 S 1012 (1107)
Q Consensus 1012 ~ 1012 (1107)
+
T Consensus 882 d 882 (1070)
T KOG0434|consen 882 D 882 (1070)
T ss_pred c
Confidence 4
No 27
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.2e-105 Score=966.91 Aligned_cols=647 Identities=28% Similarity=0.441 Sum_probs=511.2
Q ss_pred hcCCCchhHHHHHHHHHHhcCCcccCCCCCC-CcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCC
Q 001289 144 AKEYNPSSVEKSWYSWWENSGYFIADNKSSK-PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMD 222 (1107)
Q Consensus 144 ~~~y~p~~vE~~w~~~W~~~~~f~~~~~~~k-~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D 222 (1107)
...|+|..||++||++|++++.|+++.+.++ +||++++|+|||||.|||||++|||+.|+++||+||+|||||+++|||
T Consensus 2 ~~~y~~~~IE~KWQ~~W~e~~~Fe~~~d~~~~~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwd 81 (814)
T COG0495 2 MSRYNPREIEEKWQKRWEEAKVFEADEDSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWD 81 (814)
T ss_pred CcccchHHHHHHHHHHHHhcCCcccCCCCCCCCceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCccc
Confidence 4679999999999999999999999887665 599999999999999999999999999999999999999999999999
Q ss_pred ccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHH
Q 001289 223 HAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRL 302 (1107)
Q Consensus 223 ~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L 302 (1107)
++|+|++..+.+. |.+ +..|+.++++.+++||++||+|+||+|++.|+||+|++++||+|.+|
T Consensus 82 afGlPae~~A~~~-----~~~------------P~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL 144 (814)
T COG0495 82 AFGLPAENAAIKI-----GTD------------PAKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKL 144 (814)
T ss_pred ccCchHHHHHHHh-----CCC------------hHHHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHHHHH
Confidence 9999998887653 433 56899999999999999999999999999999999999999999999
Q ss_pred HHcCCEEEeeeeeeecCCCCccccccccccc-------ccCCc----ceeeecCcccc-------cc-------------
Q 001289 303 YKEGLIYRDLRLVNWDCVLRTAISDIEVDYV-------DIPKR----EMRNVPGYEKQ-------VE------------- 351 (1107)
Q Consensus 303 ~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~-------e~~~~----t~~~vp~y~~~-------~~------------- 351 (1107)
+++||||++.++|||||.|+|+|+|+||... .+..+ .++++..|++. ..
T Consensus 145 ~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~~wPE~Vk~mq~n 224 (814)
T COG0495 145 YEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRN 224 (814)
T ss_pred HHCCCEEeccccceeCCCcCCccccceeecCCcccCCCceeEeeeEEEEEEechhHHHHHhhhhhhccCCchhHHHHHHc
Confidence 9999999999999999999999999999743 22211 35677777531 11
Q ss_pred -cc--eEEEEeeecCCC--cceEEEeeccccccccCcEEEEcCCCccc--------------------------------
Q 001289 352 -FG--VLTSFAYPLEGG--LGEIVVATTRVETMLGDTAIAIHPEDARY-------------------------------- 394 (1107)
Q Consensus 352 -~g--~l~~~~y~l~~~--~~~i~vaTTrPeT~~gdtaiaV~P~d~ry-------------------------------- 394 (1107)
.| .-+.+.|++.+. ...+.|+||||.|++|.+.+++.|+++.-
T Consensus 225 WIg~s~g~~v~f~~~~~~~~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~~ 304 (814)
T COG0495 225 WIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAHA 304 (814)
T ss_pred CcCCCCCeEEEEecCCcccceeeeeeeccCccccCeEEEEEeCCchHHHHHhcCccchhHHHHHHHhcCCCceeeeeccC
Confidence 01 124556666554 46899999999999999999999998631
Q ss_pred ---ccccCcEEecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCC-----------Ccc
Q 001289 395 ---SHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDD-----------GKI 460 (1107)
Q Consensus 395 ---~~l~Gk~~~~P~~~~~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~d-----------G~~ 460 (1107)
.-..|.+++||+++..|||+..++ |.+.+|||+||.+||||.+||+.+++++||+..+|... |.+
T Consensus 305 ~k~gv~~g~~a~~p~~~e~iPi~~a~~-vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~~~~~~~~~~g~l 383 (814)
T COG0495 305 EKDGVFLGGYAINPVNGEKIPVWIANY-VLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGKKVYEGEGVL 383 (814)
T ss_pred CCcceeccccccCCCCCCcCCEEEeCc-ccccccccceecCCCCCchhhHHHHhcCCCeEEEEecCCCcccceeccCceE
Confidence 013577889999999999999995 99999999999999999999999999999999988653 343
Q ss_pred ccCCCCCCCCCChhhHHHHHHHHHHHcCCeeceeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCc
Q 001289 461 NSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKK 540 (1107)
Q Consensus 461 ~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~ 540 (1107)
. |.| .|.|+...+|...++..| +-....|||+++
T Consensus 384 i-nS~-~~~gl~~e~a~~~~~~~l--------------------------~~~~~~q~~v~Y------------------ 417 (814)
T COG0495 384 I-NSG-GLDGLDYEEAKVKIRCGL--------------------------VKRGLGQWFVNY------------------ 417 (814)
T ss_pred e-ccc-cccCcchhHHHHHHHHhH--------------------------HHhcCCceEEec------------------
Confidence 3 455 688888776655554443 334567999987
Q ss_pred eEEeccccHHHHHHHhccCCCeeeeecCCCcccceeEEEccCcch------hhccCCCCCce-EEecCHHHHHHHHhhhc
Q 001289 541 LELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDE------LKELGSYNDHW-IVARDEKEALAVANKKF 613 (1107)
Q Consensus 541 i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~------~~~~~~~~~~w-~~~~~~~ea~~~~~~~~ 613 (1107)
.++||++||||+||.|||+.+|+.|+.. ++...+..... -.+..+.-..++....|
T Consensus 418 -----------------~lrdW~~srqRywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~W~~~s~ 480 (814)
T COG0495 418 -----------------RLRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEEWVIESL 480 (814)
T ss_pred -----------------ccchHHHHHHHHhCCCcceeEcccCCcccCchHhcCcccccccccCCCCCCCCCCcceEEEec
Confidence 4789999999999999999999887631 11100000000 00001111111222345
Q ss_pred CCCCcccccCCCceeeEeccCCcccccccC------CCCChhhhhhCCcCcccccccccchHHHHHHHHHHHh--c----
Q 001289 614 SGKKFEMCQDPDVLDTWFSSGLFPLSVLGW------PDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKL--G---- 681 (1107)
Q Consensus 614 ~~~~~~l~~d~DvlDtWFdSgl~p~s~lgw------p~~~~d~~~~yP~dl~~tG~Dil~fW~armi~~~~~l--~---- 681 (1107)
|. .+..|+.||||+|++|+++++.++.. +..++.|++|||.|++++|.|.+-.|.....+....+ .
T Consensus 481 ~~--s~~~ret~Tm~~~~~sswy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yigG~ehavlHLly~rF~Hkal~d~g~~p 558 (814)
T COG0495 481 PD--STAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVP 558 (814)
T ss_pred CC--CceeeehhhhhHhcccccccHhhcChhcCccchhcHHHHhcccChheeecchhHHHHHHHHHHHHHHHhcccCcCC
Confidence 55 46789999999999999888776642 3345789999999999999876544444444444333 2
Q ss_pred CCCCccEEEEcceeeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchH
Q 001289 682 GEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDA 761 (1107)
Q Consensus 682 g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDa 761 (1107)
...||++++++|||+-.+|+|||||+||||+|+++|+ +||||+
T Consensus 559 ~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~-------------------------------------~yGADt 601 (814)
T COG0495 559 KDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVE-------------------------------------KYGADT 601 (814)
T ss_pred CccchhhhhccceEEecCCCccccccCCCCCHHHHHH-------------------------------------HhCchH
Confidence 3468999999999996589999999999999999999 999999
Q ss_pred HHHHHHhccCccccccccHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 001289 762 LRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSL 841 (1107)
Q Consensus 762 LRf~L~~~~~~~~Dinf~~~~v~~~r~f~nKl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~ 841 (1107)
+|+|+++.++..+|.+|+.+.++|.++|++++|+++.-........ . .......++|.++++...+ ++.+
T Consensus 602 ~Rl~~m~~ap~~~d~~W~e~gv~g~~rfL~r~~~l~~~~~~~~~~~------~-~~~~~~~~~~~~h~~~~~v---~~~~ 671 (814)
T COG0495 602 VRLYIMFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHLEKLVEE------L-TKEQGKEDRWLLHRTIKKV---TEDF 671 (814)
T ss_pred HHHHHHhhCChhhCCCCChhhhHHHHHHHHHHHHHHHHhhhccccc------c-cchhhHHHHHHHHHHHHHH---HHHH
Confidence 9999999999999999999999999999999999886554322110 0 0111267888877766554 5555
Q ss_pred hc-CCHHHHHHHHHHHHHHhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCC
Q 001289 842 NS-YEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQP 920 (1107)
Q Consensus 842 e~-~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~ 920 (1107)
++ +.|+.|+..+|.|. +. ..+|...... . ..+|...++.+++||+||+||+|||||+.|+.
T Consensus 672 e~~~~~nt~i~~~m~l~-N~-l~~~~~~~~~-----------~----~~~l~~~l~~~v~lLaP~aPH~aEElW~~lg~- 733 (814)
T COG0495 672 EARQTFNTAIAALMELL-NA-LRKYLRRTEG-----------D----RKVLREALETWVRLLAPFAPHIAEELWEELGN- 733 (814)
T ss_pred HHHHHHHHHHHHHHHHH-HH-HHHHHhcccc-----------h----HHHHHHHHHHHHHHhcccccHHHHHHHHHhcC-
Confidence 55 89999999999996 33 4555443210 1 16888999999999999999999999999985
Q ss_pred CCCCCCCcceeccCCCCCCCCCc
Q 001289 921 KGCATKESIMLCEYPSAVEGWTD 943 (1107)
Q Consensus 921 ~~~~~~~SI~~a~~P~~~~~~~d 943 (1107)
.++|..++||++++...+
T Consensus 734 -----~~~v~~~~wP~~de~~l~ 751 (814)
T COG0495 734 -----EGFVSNAPWPEPDEEALV 751 (814)
T ss_pred -----CCceeeCCCCCCChhhcc
Confidence 248999999999876544
No 28
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-100 Score=874.19 Aligned_cols=647 Identities=27% Similarity=0.392 Sum_probs=523.1
Q ss_pred hHHHHHHHHHHhcCCcccCCCCCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHH
Q 001289 151 SVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQV 230 (1107)
Q Consensus 151 ~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~ 230 (1107)
.||+.|.++|...-.|..+.+.++++ ||++++|||+|.|||||.+.|||.|+++||+||+||+|+.++|||.+|+|.|.
T Consensus 34 ~iEk~W~~~~~~~~~~~~~~d~sk~K-YiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAEN 112 (876)
T KOG0435|consen 34 MIEKHWKQYLKDGFPFSKDSDKSKKK-YILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAEN 112 (876)
T ss_pred HHHHHHHHHHhcCCccccccccCCCc-eEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhh
Confidence 79999999999887777666677778 88999999999999999999999999999999999999999999999999765
Q ss_pred HHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEE
Q 001289 231 VVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYR 310 (1107)
Q Consensus 231 ~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr 310 (1107)
++ .+.|..+ ..|+..+++.+++||++||++|||+|+..|++|+|++|.||+|++||++||.||
T Consensus 113 AA-----iergv~P------------~sWT~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq 175 (876)
T KOG0435|consen 113 AA-----IERGVHP------------ASWTINNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQ 175 (876)
T ss_pred HH-----HhcCCCc------------hhhhHHHHHHHHHHHHHcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhc
Confidence 54 3467765 489999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeecCCCCcccccccccccccCCc------------ceeeecCcccccc-------------------cceE--EE
Q 001289 311 DLRLVNWDCVLRTAISDIEVDYVDIPKR------------EMRNVPGYEKQVE-------------------FGVL--TS 357 (1107)
Q Consensus 311 ~~~~V~W~p~~~TaLsd~EVe~~e~~~~------------t~~~vp~y~~~~~-------------------~g~l--~~ 357 (1107)
.+.+|||||.++|+|+|++|+......| ++++++.|++++. .|.. ..
T Consensus 176 ~Ea~VNWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L~~W~~vk~mQrnWIG~~~G~e 255 (876)
T KOG0435|consen 176 AEAEVNWDPVDKTVLANEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLPEWPEVKDMQRNWIGRCDGAE 255 (876)
T ss_pred cccccccCcccceeecchhhcccCccccccchhhHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhHHHHHHhhcccccceE
Confidence 9999999999999999999987655544 3788899986432 2332 46
Q ss_pred EeeecCCC---cceEEEeeccccccccCcEEEEcCCCcc------cc------cc------cCcEEecCCCCCccceEec
Q 001289 358 FAYPLEGG---LGEIVVATTRVETMLGDTAIAIHPEDAR------YS------HL------HGKFAIHPFNGRKIPIICD 416 (1107)
Q Consensus 358 ~~y~l~~~---~~~i~vaTTrPeT~~gdtaiaV~P~d~r------y~------~l------~Gk~~~~P~~~~~iPIi~d 416 (1107)
+.|+|.++ ++.|.|+|||||||+|.+.+++.|++.. |+ .| .+-++.||++|+.+||+..
T Consensus 256 l~F~ll~~~~~de~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~~lkefl~~~~l~~Kg~~lp~~A~Np~tg~~iPv~~a 335 (876)
T KOG0435|consen 256 LMFPLLDDGSNDEILTVYTTRPETLFGASFLVLAPSHSLLDKDSSLKEFLSKSDLPQKGVQLPCQAKNPVTGRAIPVVVA 335 (876)
T ss_pred EEEEeccCCCCCceEEEEecCchhhccceEEEEcCCchhhhhhchHHHhhhhhhccccCcccceeeccCCCCceeeEEEe
Confidence 88898554 4899999999999999999999999863 11 22 2346899999999999998
Q ss_pred CccccCCCCCCceecCCCCCcchHHHHHHhCCccce----eeCCCCccccCCCCCCCC-CChhhHHHHHHHHHHHcCCee
Q 001289 417 AILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFIN----IFTDDGKINSNGGLEFEG-MPRFKAREAVNEALKKKGLYR 491 (1107)
Q Consensus 417 ~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~----iid~dG~~~~~~g~~f~G-l~~~~ar~~vi~~L~~~gl~~ 491 (1107)
++ |..-+|||+|+.+|+||..|++++++-++..+. +++++|+.+++. .|+| +.+.+|+..|++.++.+|+..
T Consensus 336 ~~-v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~~f~~~~K~~~~~--~~tn~~~~q~a~~~l~~~~~~~g~g~ 412 (876)
T KOG0435|consen 336 DY-VLDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEVIFTNFGKKNEQK--AFTNLDIRQNAALKLFQFAERKGVGG 412 (876)
T ss_pred ch-hccCCCcceeeeccCcccchhHHHhcccceeEEEEeeeecchhhhhccc--cccchhHHHHHHHHHHHHHHhcCCCc
Confidence 85 999999999999999999999999996665443 446788877654 5888 667789999999999888632
Q ss_pred ceeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeecCCCc
Q 001289 492 GAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWG 571 (1107)
Q Consensus 492 ~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG 571 (1107)
.... ..++||.|||||+||
T Consensus 413 ~~vs-------------------------------------------------------------~kLkDWLiSRQRyWG 431 (876)
T KOG0435|consen 413 YVVS-------------------------------------------------------------YKLKDWLISRQRYWG 431 (876)
T ss_pred ceec-------------------------------------------------------------chhhhhhhhhhhccC
Confidence 1110 158899999999999
Q ss_pred ccceeEEEccCcch------hhccCC-CCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCC
Q 001289 572 HQIPAWYVTLEDDE------LKELGS-YNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWP 644 (1107)
Q Consensus 572 ~pIP~~~~~~~~~~------~~~~~~-~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp 644 (1107)
+|||+.+|..|+.. ++...+ -++...-|.....+.++.+..||.++...+|++|+||||+||+|+||.++. |
T Consensus 432 TPIPivhc~~cG~vpVpes~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP~cg~pAkRETDTMDTFvDSsWYYlRylD-p 510 (876)
T KOG0435|consen 432 TPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLSKADEWVNVDCPRCGEPAKRETDTMDTFVDSSWYYLRYLD-P 510 (876)
T ss_pred CCcceEEcCCCCcccCcHHHCCcccccccccCCCCCcccchhhheeccCccCCCcccccccccchhhccceeeEeecC-C
Confidence 99999999988741 222212 122333455566666777778888888899999999999999999999986 4
Q ss_pred CCC------hhhhhhCCcCccccc--ccccchHHHHHHHHHHHh----cCCCCccEEEEcceeeCC------CC------
Q 001289 645 DDT------DDLKAFYPTSVLETG--HDILFFWVARMVMLGIKL----GGEVPFTKVYLHPMIRDA------HG------ 700 (1107)
Q Consensus 645 ~~~------~d~~~~yP~dl~~tG--~Dil~fW~armi~~~~~l----~g~~PFk~V~~Hg~v~D~------~G------ 700 (1107)
.|+ .--.+|+|+|+|++| |.+++..++|++...++- .+..||++++.+|||+.. .|
T Consensus 511 kN~e~~~d~a~a~k~MPVDvYIGG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF~~Li~QGmV~G~tf~~~~sG~yl~~~ 590 (876)
T KOG0435|consen 511 KNPEEPFDKAKAKKNMPVDVYIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKLITQGMVRGKTFRTKESGKYLGPE 590 (876)
T ss_pred CCcccccchhhhhccCceeEEeccHHHHHHHHHHHHHHHHHHhhcCCCcCCCcHHHHHhhhcccceEEecCCCCccCCHH
Confidence 443 334689999999999 789999999999877765 346799999999999842 12
Q ss_pred -------------------------ccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCC
Q 001289 701 -------------------------RKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIP 755 (1107)
Q Consensus 701 -------------------------~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~ 755 (1107)
+|||||++|+|||.++++
T Consensus 591 ev~~~nd~~~~~vlk~~~e~~v~t~eKMSKSK~NGVdP~~~v~------------------------------------- 633 (876)
T KOG0435|consen 591 EVQQVNDHQNKFVLKNDKEVVVVTYEKMSKSKHNGVDPADVVL------------------------------------- 633 (876)
T ss_pred HhhhhcCCcceeEecCCCcceeeeHHHhhhcccCCCCHHHHHH-------------------------------------
Confidence 799999999999999999
Q ss_pred CCCchHHHHHHHhccCccccccccHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHH
Q 001289 756 ECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAIS 835 (1107)
Q Consensus 756 ~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r~f~nKl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~ 835 (1107)
+||+|++|++++..++..+++||+.+.+.|..+|+.++|+++.-++..-.++-.+............++-+.+..|.+++
T Consensus 634 ~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi~rwl~riw~l~~~~~~ar~~g~~~d~~~~td~~dae~~kl~~~~n~fi~ 713 (876)
T KOG0435|consen 634 EYGVDTTRLYILFAAPPRDPINWNESAIPGIKRWLQRIWALVSQILQARDDGKAKDLKKLTDGFDAETRKLKETYNFFIK 713 (876)
T ss_pred HhCchHHHHHHHhhCCcccccccccccchhHHHHHHHHHHHHHHHHHHHhcCCcccccccccccchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999876665432221111111111234456789999999999
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHHHhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHH
Q 001289 836 RTASSLNS-YEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELW 914 (1107)
Q Consensus 836 ~v~~a~e~-~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelw 914 (1107)
.|+.+|+. +.++.|+..++.|. +.+...+ |..+.. ++ .....|+.++.||+||+||+|+|+|
T Consensus 714 ~vt~~~e~~~slNtaIS~~m~lt-N~l~~a~----k~~~~h-~~-----------~~~~al~~lv~mlaP~aPh~asE~W 776 (876)
T KOG0435|consen 714 QVTEHYEVLFSLNTAISDMMGLT-NALKKAL----KIVLVH-SP-----------EFERALEALVIMLAPFAPHVASELW 776 (876)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHH-HHHHHhh----hhhhhc-Ch-----------HHHHHHHHHHHHHhccCchhHHHHH
Confidence 99999987 67999999999986 5554443 222211 11 1234577889999999999999999
Q ss_pred HhCCCCCCCCCCCcc-eeccCCCCCCC
Q 001289 915 QRLPQPKGCATKESI-MLCEYPSAVEG 940 (1107)
Q Consensus 915 q~L~~~~~~~~~~SI-~~a~~P~~~~~ 940 (1107)
..|.... +. ....||.+++.
T Consensus 777 s~l~~~~------~~~~~~~WP~vd~~ 797 (876)
T KOG0435|consen 777 SALANDL------SWVSDVKWPEVDPD 797 (876)
T ss_pred HHHhccc------cchhccCCccCChh
Confidence 9998521 21 12269988754
No 29
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.8e-87 Score=817.30 Aligned_cols=505 Identities=20% Similarity=0.284 Sum_probs=413.5
Q ss_pred CcEEEECCCCCCCCCCCchhhHHh-HHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHH
Q 001289 175 PSFVIVLPPPNVTGALHIGHALTT-AIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFV 253 (1107)
Q Consensus 175 ~~f~i~~pPPyvnG~LHiGHal~~-~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~ 253 (1107)
++|+|++|||||||.||||||+++ ++.|+++||+||+|++|++++|+|+||++|+.++++ .|++
T Consensus 3 ~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~-----~g~~---------- 67 (556)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKK-----EGVT---------- 67 (556)
T ss_pred CcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHH-----cCCC----------
Confidence 479999999999999999999997 999999999999999999999999999999998874 4665
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCccccccccccc
Q 001289 254 SEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYV 333 (1107)
Q Consensus 254 ~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~ 333 (1107)
+++|+++|.+.|.++|++||+++| .++.|+||.|.+.|+++|.+|+++|+||++.++|+|||.|+|+|++.+|..
T Consensus 68 --~~~~~~~~~~~~~~~~~~l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g- 142 (556)
T PRK12268 68 --PQELADKYHEEHKEDFKKLGISYD--LFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEG- 142 (556)
T ss_pred --HHHHHHHHHHHHHHHHHHcCCcCC--CCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCccceec-
Confidence 357999999999999999999777 578999999999999999999999999999999999999999999854421
Q ss_pred ccCCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEecCCCCCccce
Q 001289 334 DIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPI 413 (1107)
Q Consensus 334 e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~P~~~~~iPI 413 (1107)
.+|.|+
T Consensus 143 ---------------------------------------------------------------------~cp~c~----- 148 (556)
T PRK12268 143 ---------------------------------------------------------------------TCPYCG----- 148 (556)
T ss_pred ---------------------------------------------------------------------cCCCCC-----
Confidence 133322
Q ss_pred EecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCeece
Q 001289 414 ICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGA 493 (1107)
Q Consensus 414 i~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~ 493 (1107)
. .+.+|.+|++||..+
T Consensus 149 -----------------------~----------------~~~~G~~ce~cg~~~------------------------- 164 (556)
T PRK12268 149 -----------------------Y----------------EGARGDQCDNCGALL------------------------- 164 (556)
T ss_pred -----------------------C----------------cccCCchhhhccccC-------------------------
Confidence 1 123788899998321
Q ss_pred eccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHhc-cCCCeeeeecCCCcc
Q 001289 494 KDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLE-AIRDWCVSRQLWWGH 572 (1107)
Q Consensus 494 ~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~-~l~DWcISRQ~~WG~ 572 (1107)
++..+..|+|+|||+++|++.++|||++++++++++++++ + ++.++|+..++++.+||+ +++|||||||++|||
T Consensus 165 ~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~---~--~~~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~WGi 239 (556)
T PRK12268 165 DPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWI---E--SSGDWPPNVLNFTLNWLKEGLKPRAITRDLDWGI 239 (556)
T ss_pred ChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHH---h--hccCCCHHHHHHHHHHHhCCCCCcCceeeCCCCe
Confidence 2223445999999999999999999999999999999999 3 578999999999999999 999999999999999
Q ss_pred cceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCccccccc-CCC---CCh
Q 001289 573 QIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLG-WPD---DTD 648 (1107)
Q Consensus 573 pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lg-wp~---~~~ 648 (1107)
||| |++. +..++|+||++.+.+++.++ |.. +..
T Consensus 240 piP-~~~~------------------------------------------~~~~iyvW~da~~~y~~~~~~~~~~~g~~~ 276 (556)
T PRK12268 240 PVP-WPGF------------------------------------------EGKVFYVWFDAVIGYISASKEWAERTGDPE 276 (556)
T ss_pred eCC-CCCC------------------------------------------CCcEEEEeehHhhHHHHHHHHHHHhcCCch
Confidence 999 5421 22689999998887776543 332 235
Q ss_pred hhhhhC----CcCcccccccccchHHHHHHHHHHHhc--CCCCccEEEEcceeeCCCCccccccCCCccCccccccccCc
Q 001289 649 DLKAFY----PTSVLETGHDILFFWVARMVMLGIKLG--GEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISL 722 (1107)
Q Consensus 649 d~~~~y----P~dl~~tG~Dil~fW~armi~~~~~l~--g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l 722 (1107)
+|..|| |.+++++|+||++||...+.++.+... ...| ++|++||+|++ +|+|||||+||||+|.|+|+
T Consensus 277 ~~~~~w~ds~~~~~~~~G~D~~~Fh~~~~p~~l~~~~~~~~~P-~~v~~~G~v~~-~G~KMSKS~GN~I~p~dli~---- 350 (556)
T PRK12268 277 AWKEFWLDPETKSYYFIGKDNIPFHSIIWPAMLLGSGEPLKLP-DEIVSSEYLTL-EGGKFSKSRGWGIWVDDALE---- 350 (556)
T ss_pred HHHHHhCCCCCeEEEEEeeccCcchHHHHHHHHHhcCCCCCCC-CEeeccCCEEE-CCeeeccCCCcccCHHHHHH----
Confidence 687788 778999999999998765443333332 4556 79999999995 89999999999999999999
Q ss_pred hhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHH--HHHHHHHHHHHHHHH
Q 001289 723 EGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG--YRQWCNKLWNAVRFS 800 (1107)
Q Consensus 723 ~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~--~r~f~nKl~N~~rf~ 800 (1107)
+||+|||||||++.++.++|++|+.+.+.. .++++|++||.+.++
T Consensus 351 ---------------------------------~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~~r~ 397 (556)
T PRK12268 351 ---------------------------------RYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRV 397 (556)
T ss_pred ---------------------------------HcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHHHHH
Confidence 899999999999998999999999998754 456899999987665
Q ss_pred hhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHHHHhhcccccCCCccc
Q 001289 801 MSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAF 880 (1107)
Q Consensus 801 l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~~~~~~ 880 (1107)
...+...+... ......+..|+||+++|+.+++.+.++|++|+|+.|++.+++|+ ++||+|++..|||...++..
T Consensus 398 ~~~~~~~~~~~--~~~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~l~~~~--~~~n~yi~~~kpw~~~~~~~- 472 (556)
T PRK12268 398 LSFIEKYFGGI--VPPGELGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELA--REANKYLDEKAPWKLAKTDR- 472 (556)
T ss_pred HHHHHHhcCCc--CCCCcCCcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHcCCChhhhcCCH-
Confidence 44332211110 01123567899999999999999999999999999999999997 69999999999985433211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCcceeccCCCC
Q 001289 881 ASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSA 937 (1107)
Q Consensus 881 ~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~a~~P~~ 937 (1107)
.....+..++..+++.+++||||||||+|||||++|+. +++....||..
T Consensus 473 -~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~Lg~-------~~~~~~~w~~~ 521 (556)
T PRK12268 473 -ERAATVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGG-------ENIEKLTWESL 521 (556)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHhCC-------CCCcccchhhh
Confidence 12334445555678889999999999999999999974 24455667653
No 30
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=8.1e-87 Score=773.78 Aligned_cols=380 Identities=63% Similarity=1.117 Sum_probs=346.8
Q ss_pred CcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHH
Q 001289 175 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVS 254 (1107)
Q Consensus 175 ~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~ 254 (1107)
|+|+|++|||||||.|||||+++++++|+++||+||+|++|+|++||||||+|||.++|+++.. .+++++++++++|++
T Consensus 1 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~-~~~~~~~~~~~~~~~ 79 (382)
T cd00817 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGI-EGKTRHDLGREEFLE 79 (382)
T ss_pred CcEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcc-cccchhcCCHHHHHH
Confidence 5799999999999999999999999999999999999999999999999999999999988743 345667899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCcccccccccccc
Q 001289 255 EVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVD 334 (1107)
Q Consensus 255 ~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~e 334 (1107)
.|++|++++++.++++|++||+++||++++.|+||.|.+.|+++|.+|+++|+||++.++|+|||.|+|+||+.||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~ev---- 155 (382)
T cd00817 80 KCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV---- 155 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchh----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997211
Q ss_pred cCCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEecCCCCCccceE
Q 001289 335 IPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPII 414 (1107)
Q Consensus 335 ~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~P~~~~~iPIi 414 (1107)
T Consensus 156 -------------------------------------------------------------------------------- 155 (382)
T cd00817 156 -------------------------------------------------------------------------------- 155 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCeecee
Q 001289 415 CDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAK 494 (1107)
Q Consensus 415 ~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~ 494 (1107)
T Consensus 156 -------------------------------------------------------------------------------- 155 (382)
T cd00817 156 -------------------------------------------------------------------------------- 155 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeecCCCcccc
Q 001289 495 DNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQI 574 (1107)
Q Consensus 495 ~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pI 574 (1107)
|+|||++++++.++|||++++++++++++.+ +++.+.|+|++.++++.+||++++|||||||++||+||
T Consensus 156 --------c~~cg~~~~~~~~~qwf~~l~~~~~~l~~~~---~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISR~~~WGipv 224 (382)
T cd00817 156 --------CSRSGDVIEPLLKPQWFVKVKDLAKKALEAV---KEGDIKFVPERMEKRYENWLENIRDWCISRQLWWGHRI 224 (382)
T ss_pred --------cccCCCeEEEEecCeeEEehHHHHHHHHHHH---hcCCcEEEChHHHHHHHHHHhhCccceeeeccccCCcc
Confidence 8899999999999999999999999999999 76679999999999999999999999999999999999
Q ss_pred eeEEEccCcchhhccCCCCCceEEecCHHHHHHHH--hhhcCCCCcccccCCCceeeEeccCCcccccccCCCCChhhhh
Q 001289 575 PAWYVTLEDDELKELGSYNDHWIVARDEKEALAVA--NKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKA 652 (1107)
Q Consensus 575 P~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~--~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~~~~d~~~ 652 (1107)
|+|+|..|+ ..+++...++....+ ...++.....+++++|||||||||+++|++.++||.++.+|++
T Consensus 225 P~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dvWfds~~~~~~~~~~~~~~~~~~~ 293 (382)
T cd00817 225 PAWYCKDGG-----------HWVVAREEDEAIDKAAPEACVPCGGEELKQDEDVLDTWFSSSLWPFSTLGWPEETKDLKK 293 (382)
T ss_pred ceEEeCCCC-----------cEEecchhHHHHHHhccccccCCCccCeeECCceeeeeecCCCcHHHHhCCCCcchhHhh
Confidence 999997653 334444444333222 1122223346889999999999999999999999988888999
Q ss_pred hCCcCcccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCccccccccCchhHHHHhhcC
Q 001289 653 FYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEG 732 (1107)
Q Consensus 653 ~yP~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~ 732 (1107)
|||+|++++|+||++||+.++++++..+.|..||++|++||+|+|.+|+|||||+||+|+|.|+++
T Consensus 294 ~~p~d~~~~G~D~~~~h~~~~l~~~~~~~g~~p~~~v~~hg~v~~~~g~KMSKS~Gn~v~~~dll~-------------- 359 (382)
T cd00817 294 FYPTSLLVTGHDIIFFWVARMIMRGLKLTGKLPFKEVYLHGLVRDEDGRKMSKSLGNVIDPLDVID-------------- 359 (382)
T ss_pred cCCCCeeeeecCcCchHHHHHHHHHHHhhCCCchHHeEeeeeEECCCCCCccccCCCCCCHHHHHH--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccc
Q 001289 733 NLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINL 778 (1107)
Q Consensus 733 nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf 778 (1107)
+||+||+|||+++.++.++|.+|
T Consensus 360 -----------------------~~g~Da~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 360 -----------------------GYGADALRFTLASAATQGRDINL 382 (382)
T ss_pred -----------------------hcCcHHHHHHHHhCCCccCCCCC
Confidence 89999999999999999999886
No 31
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=7.2e-86 Score=798.98 Aligned_cols=485 Identities=24% Similarity=0.342 Sum_probs=417.9
Q ss_pred EEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHH
Q 001289 177 FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEV 256 (1107)
Q Consensus 177 f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~ 256 (1107)
|+|++|||||||.|||||++++++.|+++||+||+|++|++++|+|+||.+|+..+++ +|+++
T Consensus 1 ~~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~-----~g~~~------------ 63 (530)
T TIGR00398 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQ-----EGLTP------------ 63 (530)
T ss_pred CEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHH-----cCCCH------------
Confidence 6899999999999999999999999999999999999999999999999999888864 46553
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCcccccccccccccC
Q 001289 257 WKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIP 336 (1107)
Q Consensus 257 ~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~e~~ 336 (1107)
+++++.+.+.+++++++||+++| .+..|+++.|.+.|+++|.+|+++|+||++.+.|+|||.|+|+|+|.+|++
T Consensus 64 ~e~~~~~~~~~~~~l~~LgI~~D--~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g---- 137 (530)
T TIGR00398 64 KELVDKYHEEFKDDWKWLNISFD--RFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEG---- 137 (530)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCC--CCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcC----
Confidence 47889999999999999999988 466799999999999999999999999999999999999999999975531
Q ss_pred CcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEecCCCCCccceEec
Q 001289 337 KREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICD 416 (1107)
Q Consensus 337 ~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~P~~~~~iPIi~d 416 (1107)
.||.|+
T Consensus 138 ------------------------------------------------------------------~cp~c~-------- 143 (530)
T TIGR00398 138 ------------------------------------------------------------------TCPKCG-------- 143 (530)
T ss_pred ------------------------------------------------------------------CCCCCC--------
Confidence 133332
Q ss_pred CccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCeeceecc
Q 001289 417 AILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDN 496 (1107)
Q Consensus 417 ~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~~~ 496 (1107)
.. |.+|.+|++|| . ..++.
T Consensus 144 --------------------~~----------------~~~g~~ce~cg-~------------------------~~~~~ 162 (530)
T TIGR00398 144 --------------------SE----------------DARGDHCEVCG-R------------------------HLEPT 162 (530)
T ss_pred --------------------Cc----------------ccccchhhhcc-c------------------------cCCHH
Confidence 21 23688899998 1 23566
Q ss_pred ccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCC-ceEEeccccHHHHHHHhcc-CCCeeeeecCC-Cccc
Q 001289 497 EMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKK-KLELIPRQYTAEWRRWLEA-IRDWCVSRQLW-WGHQ 573 (1107)
Q Consensus 497 ~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~-~i~~~P~~~~~~~~~wl~~-l~DWcISRQ~~-WG~p 573 (1107)
.+.+|+|+|||+++|++.++|||++++++++.+++.+ +++ ...+.|+..++.+.+||++ ++|||||||++ ||+|
T Consensus 163 ~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGip 239 (530)
T TIGR00398 163 ELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWI---RKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIP 239 (530)
T ss_pred HhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHH---HhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCee
Confidence 6789999999999999999999999999999999999 532 3556688888999999987 99999999999 9999
Q ss_pred ceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCC-Chhhhh
Q 001289 574 IPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDD-TDDLKA 652 (1107)
Q Consensus 574 IP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~~-~~d~~~ 652 (1107)
||.| +.+|+|||||+.+.|++.++|+.. +.+|+.
T Consensus 240 vP~~---------------------------------------------~~~~~yvW~da~~~y~~~~~~~~~~~~~~~~ 274 (530)
T TIGR00398 240 VPND---------------------------------------------PNKVVYVWFDALIGYISSLGILSGDTEDWKK 274 (530)
T ss_pred CCCC---------------------------------------------CCcEEEEeecchHHhHhhhccccCChhhHHH
Confidence 9964 126999999999999998888753 567999
Q ss_pred hCCcC-----cccccccccchH----HHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCccccccccCch
Q 001289 653 FYPTS-----VLETGHDILFFW----VARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLE 723 (1107)
Q Consensus 653 ~yP~d-----l~~tG~Dil~fW----~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~ 723 (1107)
|||.+ ++++|+||++|| ++.++++ |..||++|++||||++. |+|||||+||+|+|.|+|+
T Consensus 275 ~w~~~~~~~~v~~~G~Di~~~h~~~~~a~l~~~-----~~~~~~~~~~~g~v~~~-g~KmSKS~Gn~i~~~d~i~----- 343 (530)
T TIGR00398 275 WWNNDEDAELIHFIGKDIVRFHTIYWPAMLMGL-----GLPLPTQVFSHGYLTVE-GGKMSKSLGNVVDPSDLLA----- 343 (530)
T ss_pred hCCCCCCceEEEEEecccchhHHHHHHHHHHhC-----CCCCCCEEEeeccEEEC-CceecccCCceecHHHHHH-----
Confidence 99999 999999999964 4433332 34578999999999976 9999999999999999999
Q ss_pred hHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHHH--HHHHHHHHHHHHHHh
Q 001289 724 GLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGY--RQWCNKLWNAVRFSM 801 (1107)
Q Consensus 724 ~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~--r~f~nKl~N~~rf~l 801 (1107)
+||+|++||||++.++.+.|++|+.+.+... .++++++||++.+++
T Consensus 344 --------------------------------~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~ 391 (530)
T TIGR00398 344 --------------------------------RFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTL 391 (530)
T ss_pred --------------------------------HcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999888899999999998776 579999999987765
Q ss_pred hhhCCCC---CCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHHHHhhcccccCCCc
Q 001289 802 SKLGEGF---VPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNP 878 (1107)
Q Consensus 802 ~~l~~~~---~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~~~~ 878 (1107)
..+...+ .|. .......|+|+++++++++..+.++|++|+|+.|++.+++|+ ++||.|++.+|||....+.
T Consensus 392 ~~~~~~~~~~~~~----~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~--~~~n~Yi~~~kpw~~~~~~ 465 (530)
T TIGR00398 392 GFIKKYFNGVLPS----EDITDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLA--DRGNKYIDENKPWELFKQS 465 (530)
T ss_pred HHHHHhcCCcCCC----CcccchhhHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHhcCCChhhcCCh
Confidence 5433212 221 112356899999999999999999999999999999999997 7999999999999765433
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCC
Q 001289 879 AFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 919 (1107)
Q Consensus 879 ~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~ 919 (1107)
. .+++++.+++.+++.+++||+|||||+||+||++|+.
T Consensus 466 ~---~~~~~~~~l~~~l~~l~~ll~P~~P~~ae~i~~~L~~ 503 (530)
T TIGR00398 466 P---RLKELLAVCSMLIRVLSILLYPIMPKLSEKILKFLNF 503 (530)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCC
Confidence 2 4668899999999999999999999999999999985
No 32
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.9e-82 Score=784.82 Aligned_cols=484 Identities=20% Similarity=0.273 Sum_probs=409.8
Q ss_pred CcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHH
Q 001289 175 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVS 254 (1107)
Q Consensus 175 ~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~ 254 (1107)
.+|+|++|||||||.|||||+++++++|+++||+||+|++|+|++|||+||+||+.++++ .|+++
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~-----~g~~p---------- 66 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEK-----EGITP---------- 66 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHH-----cCCCH----------
Confidence 369999999999999999999999999999999999999999999999999999998875 47665
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCcccccccccccc
Q 001289 255 EVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVD 334 (1107)
Q Consensus 255 ~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~e 334 (1107)
.+|+++|++.++++|++||+++| .++.|+++.|.+.|+++|.+|+++|+||++...|+|||.|+++|+|.+|+.
T Consensus 67 --~e~~~~~~~~~~~~~~~l~i~~d--~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g-- 140 (673)
T PRK00133 67 --EELIARYHAEHKRDFAGFGISFD--NYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKG-- 140 (673)
T ss_pred --HHHHHHHHHHHHHHHHHhCCCCC--CCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchheec--
Confidence 47899999999999999999988 578899999999999999999999999999999999999999999965531
Q ss_pred cCCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEecCCCCCccceE
Q 001289 335 IPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPII 414 (1107)
Q Consensus 335 ~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~P~~~~~iPIi 414 (1107)
.||.|+..
T Consensus 141 --------------------------------------------------------------------~cp~C~~~---- 148 (673)
T PRK00133 141 --------------------------------------------------------------------TCPKCGAE---- 148 (673)
T ss_pred --------------------------------------------------------------------ccCCCCCc----
Confidence 14444321
Q ss_pred ecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCeecee
Q 001289 415 CDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAK 494 (1107)
Q Consensus 415 ~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~ 494 (1107)
|.+|..|++||..+ +
T Consensus 149 ----------------------------------------d~~g~~ce~cg~~~-------------------------~ 163 (673)
T PRK00133 149 ----------------------------------------DQYGDNCEVCGATY-------------------------S 163 (673)
T ss_pred ----------------------------------------ccCCchhhhccccC-------------------------C
Confidence 13677888998322 2
Q ss_pred ccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHhc-cCCCeeeeecCCC-cc
Q 001289 495 DNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLE-AIRDWCVSRQLWW-GH 572 (1107)
Q Consensus 495 ~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~-~l~DWcISRQ~~W-G~ 572 (1107)
+.....|+|.+||.++|++.++|||++++++++.+++.+ ++ +..| |+..++.+.+||+ +++|||||||++| |+
T Consensus 164 ~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~---~~-~~~~-~~~~~~~~~~~l~~~l~d~~ISR~~~W~Gi 238 (673)
T PRK00133 164 PTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWI---TR-SGEL-QPNVANKMKEWLEEGLQDWDISRDAPYFGF 238 (673)
T ss_pred hHhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHH---hc-CCCC-CHHHHHHHHHHHhCCCcccceeeeCCccce
Confidence 233455899999999999999999999999999999998 43 3445 8899999999996 6999999999999 99
Q ss_pred cceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccc-cCCCC--Chh
Q 001289 573 QIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVL-GWPDD--TDD 649 (1107)
Q Consensus 573 pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~l-gwp~~--~~d 649 (1107)
|+|. .+..|++||||+.+.|++.+ +|++. ..+
T Consensus 239 pvP~---------------------------------------------~~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~ 273 (673)
T PRK00133 239 EIPG---------------------------------------------APGKVFYVWLDAPIGYISSTKNLCDKRGGLD 273 (673)
T ss_pred ECCC---------------------------------------------CCCeEEEEcccchhhhhHHHhhhcccccchh
Confidence 9992 02369999999999999888 68764 457
Q ss_pred hhhhCC-cC----cccccccccch----HHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCcccccccc
Q 001289 650 LKAFYP-TS----VLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGI 720 (1107)
Q Consensus 650 ~~~~yP-~d----l~~tG~Dil~f----W~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~ 720 (1107)
|+.||| .+ ++++|+||++| |++++++.++ .++++|++||||++ +|+|||||+||||+|.|+|+
T Consensus 274 ~~~~w~~~~~~~~v~~iGkDi~~fH~i~wpa~l~a~g~-----~lP~~v~~hg~v~~-~G~KMSKS~GNvV~p~dlie-- 345 (673)
T PRK00133 274 WDEYWKKDSDTELYHFIGKDIIYFHTLFWPAMLEGAGY-----RLPTNVFAHGFLTV-EGAKMSKSRGTFIWARTYLD-- 345 (673)
T ss_pred HHHhcCCCCCceEEEEEeecchhHHHHHHHHHHHhCCC-----CCCCEEeeeccEEe-cCCcccccCCcccCHHHHHH--
Confidence 999994 42 89999999995 8887776443 34499999999997 99999999999999999999
Q ss_pred CchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcc-ccccccHHHHHH--HHHHHHHHHHHH
Q 001289 721 SLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQS-DKINLDIQRVVG--YRQWCNKLWNAV 797 (1107)
Q Consensus 721 ~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~-~Dinf~~~~v~~--~r~f~nKl~N~~ 797 (1107)
+||+|++||||++.++.+ +|++|+++.+.. ..+++|++||.+
T Consensus 346 -----------------------------------~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~ 390 (673)
T PRK00133 346 -----------------------------------HLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFA 390 (673)
T ss_pred -----------------------------------HcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998 999999998754 456899999988
Q ss_pred HHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHHHHhhcccccCC-
Q 001289 798 RFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGD- 876 (1107)
Q Consensus 798 rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~~- 876 (1107)
.++...+...+.... .....|+|+++++++++..+.++|++|+|+.|++.+++|+ ++||+|++.+|||....
T Consensus 391 ~R~~~~~~k~~~~~~-----~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~--~~~N~yi~~~kpw~~~~~ 463 (673)
T PRK00133 391 SRTAGFINKRFDGKL-----PDALADPELLEEFEAAAEKIAEAYEAREFRKALREIMALA--DFANKYVDDNEPWKLAKQ 463 (673)
T ss_pred HHHHHHHHHhcCCCC-----CCCcccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHHHHhcCChhhhcC
Confidence 877654433232211 1245699999999999999999999999999999999996 79999999999995433
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCC
Q 001289 877 NPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 919 (1107)
Q Consensus 877 ~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~ 919 (1107)
+.. ....+..+++.+++.+++||+|||||+||+||++|+.
T Consensus 464 ~~~---~~~~~l~~~~~~l~~l~~lL~Pf~P~~ae~i~~~Lg~ 503 (673)
T PRK00133 464 DGE---RLQAVCSVGLNLFRALAIYLKPVLPELAERAEAFLNL 503 (673)
T ss_pred CHH---HHHHHHHHHHHHHHHHHHHhhChhchHHHHHHHHhCC
Confidence 222 3445566667778899999999999999999999985
No 33
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.3e-83 Score=732.02 Aligned_cols=722 Identities=21% Similarity=0.280 Sum_probs=560.4
Q ss_pred hhHHHHHHHHHHhcCCcccCCC----CCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccC
Q 001289 150 SSVEKSWYSWWENSGYFIADNK----SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAG 225 (1107)
Q Consensus 150 ~~vE~~w~~~W~~~~~f~~~~~----~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~G 225 (1107)
.+||+++|++|+.+..|+.+.. +.+|+|+++.|.||+||.||+||+++.+-.|+.+-|+||+|++|||++|++|.|
T Consensus 15 ~eiEk~~q~~W~~e~~fevda~~el~~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHCTG 94 (1080)
T KOG0437|consen 15 LEIEKKYQKKWDTEKVFEVDAPNELQKSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHCTG 94 (1080)
T ss_pred HHHHHHHHHhhhhhhheeccCchhcccccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeecccccCC
Confidence 3799999999999999998763 567899999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHH-h--------------------------------CC----------Cc------cc--cChH---H
Q 001289 226 IATQVVVEKKLMRE-R--------------------------------KL----------TR------HD--IGRE---Q 251 (1107)
Q Consensus 226 i~~q~~vEk~l~~~-~--------------------------------g~----------~~------~d--~~re---~ 251 (1107)
+||-+.+.|. .++ + |+ .. .+ ++++ +
T Consensus 95 MPI~A~AdKL-krEie~fG~ppdf~~e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~~ 173 (1080)
T KOG0437|consen 95 MPIKASADKL-KREIELFGCPPDFPEEEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIKK 173 (1080)
T ss_pred CccHHhHHHH-HHHHHHhCCCCCCchhhhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHHHhhc
Confidence 9998776542 221 0 11 00 01 2233 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCC--hhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCccccccc
Q 001289 252 FVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMD--EKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIE 329 (1107)
Q Consensus 252 f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d--~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~E 329 (1107)
|.+ +..|..++.....+++++||..+||+|.+.|+| |.|..+|+|+|.+|.+.|.|..|+|...|||.+++++.|++
T Consensus 174 F~d-~~~WL~yFPpLc~~dlk~~gl~iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmDHD 252 (1080)
T KOG0437|consen 174 FAD-PKHWLYYFPPLCERDLKRFGLGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMDHD 252 (1080)
T ss_pred ccC-hhHHHHhCChHHHHHHHHhCCCcceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCcccccc
Confidence 444 789999999999999999999999999999987 89999999999999999999999999999999999999998
Q ss_pred ccccc---cCCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcc-------------
Q 001289 330 VDYVD---IPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDAR------------- 393 (1107)
Q Consensus 330 Ve~~e---~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~r------------- 393 (1107)
....| -++.|++++...+..- ..--.+.+.+.+++.||.|||||+|.|++.|+|+-..
T Consensus 253 R~sGEgV~PqeytliKle~le~~p------~~l~~~~~~~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~~~e~fi 326 (1080)
T KOG0437|consen 253 RASGEGVGPQEYTLIKLEVLEPFP------KALSSLKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFEACNETEVFI 326 (1080)
T ss_pred cccCCCCCcceEEEEEEEecccch------hhccccccceeeeeehhcCCccccCccceEEcCCccEEeEEecCCceEEE
Confidence 75433 3444555543222100 0000123445789999999999999999999999531
Q ss_pred ----------c------------------ccccCcEEecCCC-CCccceEecCccccCCCCCCceecCCCCCcchHHHHH
Q 001289 394 ----------Y------------------SHLHGKFAIHPFN-GRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGK 444 (1107)
Q Consensus 394 ----------y------------------~~l~Gk~~~~P~~-~~~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~ 444 (1107)
| .+|+|..+..|+. ...+.+++... |..+.|||+|.++|+.+|+||...+
T Consensus 327 ~t~raa~NmsyQ~~tk~~g~~~~~~~i~G~~~iGa~l~aPlsv~~~vy~LPMlT-i~~~KGTGvVtsVpsdsPDDf~al~ 405 (1080)
T KOG0437|consen 327 ATERAARNMSYQKLTKERGVVSCLVTITGYDLIGAPLSAPLSVYERVYALPMLT-ILATKGTGVVTSVPSDSPDDFAALQ 405 (1080)
T ss_pred eehHHHhhcchhhccccCCcccceeeecchhhcCCcccCcchhhheeeecccee-eeccCCceeEEeCCCCCchhhhHHH
Confidence 2 2578888888884 45566666664 8899999999999999999999874
Q ss_pred H-------hCC-------ccceeeCC---------------------------------------CCccccCCCCCCCCC
Q 001289 445 R-------HNL-------EFINIFTD---------------------------------------DGKINSNGGLEFEGM 471 (1107)
Q Consensus 445 ~-------~~L-------~~i~iid~---------------------------------------dG~~~~~~g~~f~Gl 471 (1107)
. +|| +++.||.- +|.|. .| +|.|.
T Consensus 406 dL~kK~~lYg~~~ew~~~E~vPii~~~~fGdl~ae~vc~~lKiqs~~dk~klaeaK~~~y~e~fy~g~ml--ig-~y~G~ 482 (1080)
T KOG0437|consen 406 DLKKKPELYGLKPEWVLFEIVPIIRIPGFGDLAAEVVCDELKIQSPNDKKKLAEAKKLAYLEGFYEGTML--IG-KYKGE 482 (1080)
T ss_pred hhhhcccccCCChhhccccccceeeccccchhhHHHHHHHHhccCchhHHHHHHhhHHHHHHhhhcceEE--Ee-ccccc
Confidence 2 233 45556542 34432 35 89999
Q ss_pred ChhhHHHHHHHHHHHcCCeeceeccccccceeccCCCeeEecccccccccccH--HHHHHHHhhhccCCCceEEeccccH
Q 001289 472 PRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNS--MAMEALYAVMDDDKKKLELIPRQYT 549 (1107)
Q Consensus 472 ~~~~ar~~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~--~~~~a~~~v~~~~~~~i~~~P~~~~ 549 (1107)
++.++++.|...|.+.|...... +..-++-+|||+.|+..|++||||++.+ +++.+.+++ .+++.+.+..+
T Consensus 483 KVe~~K~~i~~~li~~g~a~~y~--EPEkqVmSRSGdeCiVAL~DQWYldYgE~eWKk~a~~cL-----e~l~~f~dEtR 555 (1080)
T KOG0437|consen 483 KVEDAKPKIKTDLIETGDALKYN--EPEKQVMSRSGDECIVALCDQWYLDYGEAEWKKQAKECL-----ENLNTFSDETR 555 (1080)
T ss_pred cHHhhhhHHHHHHHhcccceeec--CcchhhhccCCCceEEEeccchhhhcCcHHHHHHHHHHH-----hhhhccCHHHH
Confidence 99999999999999999877653 2334677999999999999999999986 889999998 67877888889
Q ss_pred HHHHHHhccCCCeeeeecCCCcccceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCC-Ccee
Q 001289 550 AEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDP-DVLD 628 (1107)
Q Consensus 550 ~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~-DvlD 628 (1107)
+.+..-|+|+..|.+||....|++||+ -...--+++.++++|+.+|+++|-......... -+.-++...|-+ +|+|
T Consensus 556 ~~fE~tLdWL~~wacsRsyGLGTrlPW-D~qyLvESLSDSTIYmAyYTvaHll~~d~~g~~--~~plgi~~~QMtdeVwd 632 (1080)
T KOG0437|consen 556 NGFEDTLDWLGQWACSRSYGLGTRLPW-DEQYLVESLSDSTIYMAYYTVAHLLHRDLYGKV--EGPLGIKPDQMTDEVWD 632 (1080)
T ss_pred HHHHHHHHHHHhhhhhccccCCCCCCC-cHHHHHHhcchhHHHHHHHHHHHHHHHhhccCC--cccCCCChhhcCHHHHH
Confidence 999999999999999999999999994 222112346788999999999887665321100 000123344443 5888
Q ss_pred eEeccCCcccccccCCCC-----ChhhhhhCCcCcccccccccchHHHHHHHHHHHhc--CCCCccEEEEcceeeCCCCc
Q 001289 629 TWFSSGLFPLSVLGWPDD-----TDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLG--GEVPFTKVYLHPMIRDAHGR 701 (1107)
Q Consensus 629 tWFdSgl~p~s~lgwp~~-----~~d~~~~yP~dl~~tG~Dil~fW~armi~~~~~l~--g~~PFk~V~~Hg~v~D~~G~ 701 (1107)
.-|--...|- .+..|.+ +.+|++|||.|++++|+|++..+...++..+.++. ..-| +.+.++|+++ .+++
T Consensus 633 YvF~~~~~~k-~t~i~~e~L~~lr~eF~Y~YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~WP-kgiraNGHLm-LNsE 709 (1080)
T KOG0437|consen 633 YVFLNEPYPK-NTAIPEEALSNLRREFEYFYPIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWP-KGIRANGHLM-LNSE 709 (1080)
T ss_pred HhhccCCCCc-CCCccHHHHHHHHHhhhcccceeeeeccccccccceeEeeeehhhhcccccCc-cceeeCceEE-ecch
Confidence 7776555443 2233332 36899999999999999999888887777777764 3457 9999999999 9999
Q ss_pred cccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHH
Q 001289 702 KMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQ 781 (1107)
Q Consensus 702 KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~ 781 (1107)
|||||.||+.+..+.|+ +||||+.|++|+..+++-+|.||...
T Consensus 710 KMSKSTGNfmTL~qaie-------------------------------------KFgad~tRlalAdaGD~veDANF~ea 752 (1080)
T KOG0437|consen 710 KMSKSTGNFMTLEQAIE-------------------------------------KFGADGTRLALADAGDGVEDANFVEA 752 (1080)
T ss_pred hhccccCCeeeHHHHHH-------------------------------------HhCccceeeeeecccCCcccchhHHh
Confidence 99999999999999998 99999999999999999999999877
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCC-CCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHH
Q 001289 782 RVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPH-NLPFSCKWILSVLNKAISRTASSLNSYEFSDAAST-VYSWWQY 859 (1107)
Q Consensus 782 ~v~~~r~f~nKl~N~~rf~l~~l~~~~~p~~~~~~~-~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~-i~~f~~~ 859 (1107)
...+ ++-+|++...++...+.+. ..+... ...+.|+.+.+.+|.++....++|+...|..|++. .|+| .
T Consensus 753 ~AnA---aILRLyt~~ew~eEm~~~~----s~LrtGp~~~FaDrvf~nemN~~i~~t~~aye~~~fk~aLK~Gfyd~--q 823 (1080)
T KOG0437|consen 753 NANA---AILRLYTYVEWIEEMCENR----SSLRTGPASTFADRVFENEMNALIAKTERAYEDTLFKDALKYGFYDL--Q 823 (1080)
T ss_pred cccH---HHHHHHHHHHHHHHHHhhH----HhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHH--H
Confidence 6554 4557777777765544320 011112 23489999999999999999999999999999998 7888 5
Q ss_pred hHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCcceeccCCCCCC
Q 001289 860 QFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVE 939 (1107)
Q Consensus 860 ~l~d~Yie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~a~~P~~~~ 939 (1107)
...|+|-+.+- .. .....++..+++...||+||.||++|.||+.+... ++++...||.+++
T Consensus 824 aArD~Yrel~g-----~~--------mh~dLv~r~ietqtlLLaPi~Ph~aeyiw~~~~~~------~~~v~~~wP~~s~ 884 (1080)
T KOG0437|consen 824 AARDMYRELCG-----EG--------MHRDLVFRFIETQTLLLAPICPHLAEYIWRTVLKK------NFSVNVGWPFVSP 884 (1080)
T ss_pred HHHHHHHHHhc-----cc--------ccHHHHHHHHHHHHHHHhccchHHHHHHHHHhccC------CceeecCCCCCCC
Confidence 78899988763 11 22467888999999999999999999999998753 3455569999875
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHH
Q 001289 940 GWTDERAEFEMDLVESTVRCIRSL 963 (1107)
Q Consensus 940 ~~~d~~~e~~~e~v~~vi~~iRsl 963 (1107)
. ++.+...-.++++.+..+|..
T Consensus 885 ~--~e~~~~~~~yl~~~l~r~~~~ 906 (1080)
T KOG0437|consen 885 P--DEKLGSSALYLKRTLKRLRAE 906 (1080)
T ss_pred H--HHHhhhhHHHHHHHHHHHHHH
Confidence 3 333333333555555555443
No 34
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1e-81 Score=777.24 Aligned_cols=470 Identities=24% Similarity=0.350 Sum_probs=398.4
Q ss_pred CCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHH
Q 001289 174 KPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFV 253 (1107)
Q Consensus 174 k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~ 253 (1107)
+++|+|++|+|||||.|||||++++++.|+++||+||+|++|+|++|+|+||.+|+..++ +.|+++
T Consensus 3 ~~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~-----~~g~~~--------- 68 (648)
T PRK12267 3 KKTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAE-----KAGKTP--------- 68 (648)
T ss_pred CCCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHH-----HcCCCH---------
Confidence 357999999999999999999999999999999999999999999999999999977664 357764
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCccccccccccc
Q 001289 254 SEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYV 333 (1107)
Q Consensus 254 ~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~ 333 (1107)
.++++.+.+.|+++|++||+++| .++.|+|+.|.+.|+++|.+|+++|+||++...++|||.|+++|+|.++.
T Consensus 69 ---~e~~d~~~~~fk~~l~~lgI~~D--~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~-- 141 (648)
T PRK12267 69 ---QEYVDEISAGFKELWKKLDISYD--KFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLV-- 141 (648)
T ss_pred ---HHHHHHHHHHHHHHHHHcCCCCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhc--
Confidence 47889999999999999999988 67889999999999999999999999999999999999999999874321
Q ss_pred ccCCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEecCCCCCccce
Q 001289 334 DIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPI 413 (1107)
Q Consensus 334 e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~P~~~~~iPI 413 (1107)
T Consensus 142 -------------------------------------------------------------------------------- 141 (648)
T PRK12267 142 -------------------------------------------------------------------------------- 141 (648)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCeece
Q 001289 414 ICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGA 493 (1107)
Q Consensus 414 i~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~ 493 (1107)
+
T Consensus 142 -------~------------------------------------------------------------------------ 142 (648)
T PRK12267 142 -------D------------------------------------------------------------------------ 142 (648)
T ss_pred -------c------------------------------------------------------------------------
Confidence 0
Q ss_pred eccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHH-HHhcc-CCCeeeeecC-CC
Q 001289 494 KDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWR-RWLEA-IRDWCVSRQL-WW 570 (1107)
Q Consensus 494 ~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~-~wl~~-l~DWcISRQ~-~W 570 (1107)
.|+|+|||.+++++.++|||++++++++++++++ ++....+.|+..++.+. +||++ ++|||||||+ .|
T Consensus 143 ------~~~c~~cg~~~e~~~~~~~f~~l~~~~~~l~~~~---~~~~~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~W 213 (648)
T PRK12267 143 ------GGKCPDCGREVELVKEESYFFRMSKYQDRLLEYY---EENPDFIQPESRKNEMINNFIKPGLEDLSISRTSFDW 213 (648)
T ss_pred ------CCcCCCCCCcCeEEecceEEEEcHHHHHHHHHHH---hhCCcccCCHHHHHHHHHHHhhCCCCCcccCCCCCCc
Confidence 1579999999999999999999999999999999 54444577999999999 99986 9999999995 79
Q ss_pred cccceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCC-Chh
Q 001289 571 GHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDD-TDD 649 (1107)
Q Consensus 571 G~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~~-~~d 649 (1107)
|+|||.+ +.+|+||||||+++|++.+|||.. ..+
T Consensus 214 GipvP~~---------------------------------------------~~~v~yVWfDA~~~y~s~~~~~~~~~~~ 248 (648)
T PRK12267 214 GIPVPFD---------------------------------------------PKHVVYVWIDALLNYITALGYGSDDDEL 248 (648)
T ss_pred ceECCCC---------------------------------------------CCCEEEEcccchHHHHHHcCCCCCCchH
Confidence 9999941 237999999999999999999863 457
Q ss_pred hhhhCCcCcccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCccccccccCchhHHHHh
Q 001289 650 LKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRL 729 (1107)
Q Consensus 650 ~~~~yP~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l 729 (1107)
|+.|||.+++++|+||++||.....++-+. .|..||++|++||++++ +|+|||||+||||+|.++|+
T Consensus 249 ~~~~wp~~~~~~GkDii~fH~i~wpa~l~~-~~~~~p~~v~~hg~l~~-eg~KMSKS~GN~i~p~d~l~----------- 315 (648)
T PRK12267 249 FKKFWPADVHLVGKDILRFHAIYWPIMLMA-LGLPLPKKVFAHGWWLM-KDGKMSKSKGNVVDPEELVD----------- 315 (648)
T ss_pred HHhhcccceEEEeeeecchhHHHHHHHHHh-CCCCCCcEEEecceEEE-CCceecccCCcccCHHHHHH-----------
Confidence 999999999999999999744433222111 24568899999999995 69999999999999999998
Q ss_pred hcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHHH--HHHHHHHHHHHHHHhhhhCCC
Q 001289 730 EEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGY--RQWCNKLWNAVRFSMSKLGEG 807 (1107)
Q Consensus 730 ~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~--r~f~nKl~N~~rf~l~~l~~~ 807 (1107)
.||+|+|||||++.++.++|.+|+++.+... +.|+|+|||++.+++..+...
T Consensus 316 --------------------------~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~~ 369 (648)
T PRK12267 316 --------------------------RYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMINKY 369 (648)
T ss_pred --------------------------HcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 8999999999999899999999999998663 458999999987766554322
Q ss_pred CCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHHHHhhcccccCCCcccHHHHHHH
Q 001289 808 FVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAA 887 (1107)
Q Consensus 808 ~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~~~~~~~~~~~~a 887 (1107)
+..... .....+..|+|++++++.++..+.++|++|+|+.|++.+++|+ .+||+|++..|||....+.........+
T Consensus 370 ~~~~~p-~~~~~~~~D~~ll~~l~~~~~~v~~~~e~~~~~~al~~i~~~~--~~~N~Yi~~~kpW~~~~~~~~~~~~~~~ 446 (648)
T PRK12267 370 FDGEIP-APGNVTEFDEELIALAEETLKNYEELMEELQFSRALEEVWKLI--SRANKYIDETAPWVLAKDEGKKERLATV 446 (648)
T ss_pred cCCcCC-CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHhCCChhhhcCcccHHHHHHH
Confidence 221110 0123457899999999999999999999999999999999997 5899999999999543221101123445
Q ss_pred HHHHHHHHHHHHHHHhchhhHHHHHHHHhCCC
Q 001289 888 QHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 919 (1107)
Q Consensus 888 ~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~ 919 (1107)
..+++.++..+++||+|||||+||+||++|+.
T Consensus 447 l~~~~~~l~~~~~lL~P~~P~~ae~i~~~Lg~ 478 (648)
T PRK12267 447 MYHLAESLRKVAVLLSPFMPETSKKIFEQLGL 478 (648)
T ss_pred HHHHHHHHHHHHHHHhCccchHHHHHHHHcCC
Confidence 66777788888999999999999999999985
No 35
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=8.2e-80 Score=763.61 Aligned_cols=493 Identities=15% Similarity=0.205 Sum_probs=406.2
Q ss_pred CCCCcEEEECCCCCCCCCCCchhhHH-hHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChH
Q 001289 172 SSKPSFVIVLPPPNVTGALHIGHALT-TAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGRE 250 (1107)
Q Consensus 172 ~~k~~f~i~~pPPyvnG~LHiGHal~-~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re 250 (1107)
.++++|+|++|||||||.|||||+++ ++.+|+++||+||+|++|+|++|+|+||+||+..+++ .|++
T Consensus 14 ~~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~-----~g~~------- 81 (801)
T PLN02610 14 PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALE-----ENCT------- 81 (801)
T ss_pred CCCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHH-----cCCC-------
Confidence 34568999999999999999999996 6779999999999999999999999999999988754 4666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCcccccccc
Q 001289 251 QFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEV 330 (1107)
Q Consensus 251 ~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EV 330 (1107)
|++|++++++.+++++++||+++| ++++|+||.|.++|+++|.+|+++|+||++.+.++|||.|+|+|+|..|
T Consensus 82 -----p~e~~d~~~~~~~~~~~~l~i~~D--~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v 154 (801)
T PLN02610 82 -----PKEICDKYHAIHKEVYDWFDISFD--KFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLV 154 (801)
T ss_pred -----HHHHHHHHHHHHHHHHHHcCCccc--cCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHh
Confidence 458899999999999999999988 8889999999999999999999999999999999999999999999766
Q ss_pred cccccCCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEecCC--CC
Q 001289 331 DYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPF--NG 408 (1107)
Q Consensus 331 e~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~P~--~~ 408 (1107)
+. .||. |+
T Consensus 155 ~G----------------------------------------------------------------------~CP~~~C~ 164 (801)
T PLN02610 155 EG----------------------------------------------------------------------TCPTEGCN 164 (801)
T ss_pred cC----------------------------------------------------------------------cCCccccC
Confidence 42 1555 32
Q ss_pred CccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcC
Q 001289 409 RKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKG 488 (1107)
Q Consensus 409 ~~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~g 488 (1107)
.. +.+|..|++||.
T Consensus 165 ~~--------------------------------------------~a~Gd~Ce~Cg~---------------------- 178 (801)
T PLN02610 165 YD--------------------------------------------SARGDQCEKCGK---------------------- 178 (801)
T ss_pred cc--------------------------------------------ccccchhhhccc----------------------
Confidence 11 126778899982
Q ss_pred CeeceeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHH---HHHHHhc-cCCCeee
Q 001289 489 LYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTA---EWRRWLE-AIRDWCV 564 (1107)
Q Consensus 489 l~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~---~~~~wl~-~l~DWcI 564 (1107)
...+..+..|+|.+||.+++.+-+.|||++++.+++.+++++ +... +.|....+ .+.+||+ +++||||
T Consensus 179 ---~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~---~~~~--~~~~~~~n~~~~~~~~l~~gL~d~~I 250 (801)
T PLN02610 179 ---LLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYI---NETS--VAGGWSQNAIQTTNAWLRDGLKPRCI 250 (801)
T ss_pred ---cCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHH---HhCC--CCCCcCHHHHHHHHHHHhCCCCCcce
Confidence 234567778999999999999999999999999999999999 5433 44554444 4558995 6999999
Q ss_pred eecCCCcccceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccc-cC
Q 001289 565 SRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVL-GW 643 (1107)
Q Consensus 565 SRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~l-gw 643 (1107)
||...||+|+|. .+ -+..|++||||+.+.|++.+ +|
T Consensus 251 sR~~~WGipvP~-----~~--------------------------------------~~~~v~YVWfDAl~~Yis~~~~~ 287 (801)
T PLN02610 251 TRDLKWGVPVPL-----EK--------------------------------------YKDKVFYVWFDAPIGYVSITACY 287 (801)
T ss_pred eeecCCcccCCC-----CC--------------------------------------CCCcEEEEehhhHHHHHHHHhhh
Confidence 999999999993 00 02379999999999999987 78
Q ss_pred CCCChhhhhhCCc--C---cccccccccch----HHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCcc
Q 001289 644 PDDTDDLKAFYPT--S---VLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPL 714 (1107)
Q Consensus 644 p~~~~d~~~~yP~--d---l~~tG~Dil~f----W~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~ 714 (1107)
.. +|+.|||. + +++.|+||++| |++.+++.+... .+| ++|++||++. .+|+|||||+||||+|.
T Consensus 288 ~~---~~~~~W~~~~~~~~~hfiGKDi~~fH~i~wPa~L~a~g~~~--~~p-~~i~~~g~l~-~eG~KMSKS~GNvV~p~ 360 (801)
T PLN02610 288 TP---EWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENW--TMM-KTISVTEYLN-YEGGKFSKSKGVGVFGN 360 (801)
T ss_pred hh---HHHHhcCCcccceEEEEEeeecchhHHHHHHHHHHhCCCCc--CCC-CEEEeccCEe-cCCceecCcCCcccCHH
Confidence 53 58889976 6 79999999987 666655544321 134 9999999998 89999999999999999
Q ss_pred ccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCC-CCchHHHHHHHhccCccccccccHHHHHHHHH--HHH
Q 001289 715 EVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPE-CGTDALRFALVSYTAQSDKINLDIQRVVGYRQ--WCN 791 (1107)
Q Consensus 715 dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~-~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r~--f~n 791 (1107)
++++ . ||+|++||||++.++.++|.+|+++.+....| ++|
T Consensus 361 ~~i~-------------------------------------~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n 403 (801)
T PLN02610 361 DAKD-------------------------------------TNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLN 403 (801)
T ss_pred HHHh-------------------------------------ccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHH
Confidence 9998 5 99999999999999999999999999876533 899
Q ss_pred HHHHHHHHHhhhhC----CCCCCCCCC-CCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHHH
Q 001289 792 KLWNAVRFSMSKLG----EGFVPPLKL-HPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFI 866 (1107)
Q Consensus 792 Kl~N~~rf~l~~l~----~~~~p~~~~-~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yi 866 (1107)
+|+|++.+++..+. +.|...... ........|+|++++++++++.+.++|++|+|+.|++.+++| .++||+||
T Consensus 404 ~lGNlv~R~~~~i~~~~~k~~~g~vp~~~~~~~~~~d~~Ll~~~~~~i~~v~~~me~~~~~~Al~~I~~l--~~~~NkYI 481 (801)
T PLN02610 404 NLGNFINRVLSFIAKPPGAGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSI--SSEGNAYL 481 (801)
T ss_pred HHHHHHHHHHHHHHhhhhhccCCcCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH--HHHHHHHH
Confidence 99998776655443 122221100 011234579999999999999999999999999999999998 59999999
Q ss_pred Hhhccccc-CCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCC
Q 001289 867 EAIKPYFA-GDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 919 (1107)
Q Consensus 867 e~~K~~l~-~~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~ 919 (1107)
+..+||-. .++.. ....+..++..+++.+++|||||||++||+||++|+.
T Consensus 482 e~~kPW~L~k~d~~---~l~~vl~~~le~lr~la~LL~PfmP~~aeeI~~~Lg~ 532 (801)
T PLN02610 482 QESQFWKLYKEDKP---SCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLNL 532 (801)
T ss_pred HhcCchhhhCCCHH---HHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCC
Confidence 99999943 32221 2334455555688889999999999999999999985
No 36
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3e-79 Score=739.12 Aligned_cols=464 Identities=24% Similarity=0.367 Sum_probs=402.2
Q ss_pred CcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHH
Q 001289 175 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVS 254 (1107)
Q Consensus 175 ~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~ 254 (1107)
++|+|++|||||||.|||||++++++.|+++||+||+|++|.+++|+|+||.+++..++ +.|+++
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~-----~~g~~~---------- 65 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAE-----EAGISP---------- 65 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHH-----HcCCCH----------
Confidence 36999999999999999999999999999999999999999999999999999876553 457664
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCcccccccccccc
Q 001289 255 EVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVD 334 (1107)
Q Consensus 255 ~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~e 334 (1107)
.++++.|+..|+++|++||+++| .++.|+++.|...|+++|.+|+++|+||++.+.|+|||.|+|+|++.|+..
T Consensus 66 --~~~~~~~~~~~~~~l~~l~I~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~-- 139 (511)
T PRK11893 66 --QELADRNSAAFKRLWEALNISYD--DFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIE-- 139 (511)
T ss_pred --HHHHHHHHHHHHHHHHHhCCCcC--CceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcC--
Confidence 47889999999999999999887 567899999999999999999999999999999999999999999844210
Q ss_pred cCCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEecCCCCCccceE
Q 001289 335 IPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPII 414 (1107)
Q Consensus 335 ~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~P~~~~~iPIi 414 (1107)
T Consensus 140 -------------------------------------------------------------------------------- 139 (511)
T PRK11893 140 -------------------------------------------------------------------------------- 139 (511)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCeecee
Q 001289 415 CDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAK 494 (1107)
Q Consensus 415 ~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~ 494 (1107)
+
T Consensus 140 --------------------------------------------------~----------------------------- 140 (511)
T PRK11893 140 --------------------------------------------------D----------------------------- 140 (511)
T ss_pred --------------------------------------------------C-----------------------------
Confidence 0
Q ss_pred ccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHhc-cCCCeeeee-cCCCcc
Q 001289 495 DNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLE-AIRDWCVSR-QLWWGH 572 (1107)
Q Consensus 495 ~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~-~l~DWcISR-Q~~WG~ 572 (1107)
.|+|+|||++++++.++|||++++.+++.+.+.+ +++...+.|+..++.+.+||+ +++|||||| |++||+
T Consensus 141 -----~p~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~---~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~~~~WGi 212 (511)
T PRK11893 141 -----GYRCPPTGAPVEWVEEESYFFRLSKYQDKLLELY---EANPDFIQPASRRNEVISFVKSGLKDLSISRTNFDWGI 212 (511)
T ss_pred -----CCCCCCCCCcceEEecCeEEEEcHHHHHHHHHHH---HhCCCccCCHHHHHHHHHHHHCCCCCcccCCCCCCCCc
Confidence 1789999999999999999999999999999998 543334679999999999997 599999999 999999
Q ss_pred cceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCCC----h
Q 001289 573 QIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDT----D 648 (1107)
Q Consensus 573 pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~~~----~ 648 (1107)
|||.+ +.+|+||||||++.|++.+|||.+. +
T Consensus 213 piP~~---------------------------------------------~~~~~~vWfda~~~y~s~~~~p~~~~~~~~ 247 (511)
T PRK11893 213 PVPGD---------------------------------------------PKHVIYVWFDALTNYLTALGYPDDEELLAE 247 (511)
T ss_pred cCCCC---------------------------------------------CCceEEEEecCcHHHHhHhccccccccchh
Confidence 99941 2369999999999999999998753 3
Q ss_pred hhhhhCCcCcccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCccccccccCchhHHHH
Q 001289 649 DLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKR 728 (1107)
Q Consensus 649 d~~~~yP~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~ 728 (1107)
+|.+|||.|++++|+||++||....+++...+.++.| +.+++||||++ +|+|||||+||+|+|.|+++
T Consensus 248 ~~~~~~~~D~~~~G~D~~~~h~~~~~a~~~a~~~~~p-~~~~~~g~v~~-~G~KMSKS~GN~i~~~dll~---------- 315 (511)
T PRK11893 248 LFNKYWPADVHLIGKDILRFHAVYWPAFLMAAGLPLP-KRVFAHGFLTL-DGEKMSKSLGNVIDPFDLVD---------- 315 (511)
T ss_pred HHHhcCCCcceEecccccccchhHHHHHHHhCCCCCC-CEEEeeccEEE-CCeeecccCCcEEcHHHHHH----------
Confidence 6899999999999999999988888777776656778 99999999995 89999999999999999998
Q ss_pred hhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHHHH--HHHHHHHHHHHHHhhhhC-
Q 001289 729 LEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYR--QWCNKLWNAVRFSMSKLG- 805 (1107)
Q Consensus 729 l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r--~f~nKl~N~~rf~l~~l~- 805 (1107)
+||+|++||||++.++.++|++|+.+.+.... .++++++|++..+...+.
T Consensus 316 ---------------------------~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~ 368 (511)
T PRK11893 316 ---------------------------EYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIAK 368 (511)
T ss_pred ---------------------------HcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999998888899999999986643 488999998765443322
Q ss_pred --CCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHHHHhhcccccCC-CcccHH
Q 001289 806 --EGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGD-NPAFAS 882 (1107)
Q Consensus 806 --~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~~-~~~~~~ 882 (1107)
+++.|.. ......|+||+++++.++..+.++|++|+|+.|++.+++|+ ..+|+|++..+||.... +..
T Consensus 369 ~~~~~~~~~----~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~--~~~n~y~~~~~pw~~~~~~~~--- 439 (511)
T PRK11893 369 NFDGKVPEP----GALTEADEALLEAAAALLERVRAAMDNLAFDKALEAILALV--RAANKYIDEQAPWSLAKTDPE--- 439 (511)
T ss_pred hcCCCCCCC----cccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHhhCCChhhhcCCHH---
Confidence 2233321 13457799999999999999999999999999999999997 67899999999985433 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCC
Q 001289 883 ERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 919 (1107)
Q Consensus 883 ~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~ 919 (1107)
..+.+..+++.++..+++||+|||||+||+||+.|+.
T Consensus 440 ~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~L~~ 476 (511)
T PRK11893 440 RLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGV 476 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHhCC
Confidence 4566778888889999999999999999999999985
No 37
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=5.7e-77 Score=719.20 Aligned_cols=478 Identities=20% Similarity=0.308 Sum_probs=392.9
Q ss_pred hcCCcccCCC-----CCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHH
Q 001289 162 NSGYFIADNK-----SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 236 (1107)
Q Consensus 162 ~~~~f~~~~~-----~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l 236 (1107)
++.+|.++.+ ..+++|+|++|||||||.||||||++++++|+++||+||+|++|+|++|||+||++|+..++
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~--- 127 (616)
T PLN02224 51 KRALYCTSSSQESTVDEADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAA--- 127 (616)
T ss_pred cceeeccCCCcccCCCCCCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHH---
Confidence 3456665543 23468999999999999999999999999999999999999999999999999999987664
Q ss_pred HHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEeeeeee
Q 001289 237 MRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVN 316 (1107)
Q Consensus 237 ~~~~g~~~~d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~ 316 (1107)
++|.++ .++++++...+++++++||+++| +++.|++|.|.++|+++|.+|+++|+||++.++++
T Consensus 128 --~~g~~p------------~e~~~~~~~~~~~~~~~l~I~~D--~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~ 191 (616)
T PLN02224 128 --ANGRNP------------PEHCDIISQSYRTLWKDLDIAYD--KFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGL 191 (616)
T ss_pred --HcCCCh------------HHHHHHHHHHHHHHHHHcCCCCC--cCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeee
Confidence 356654 36788888999999999999666 99999999999999999999999999999999999
Q ss_pred ecCCCCcccccccccccccCCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCccccc
Q 001289 317 WDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSH 396 (1107)
Q Consensus 317 W~p~~~TaLsd~EVe~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~ 396 (1107)
|||+|++.+.+.|+..
T Consensus 192 yc~~ce~f~~~~~l~~---------------------------------------------------------------- 207 (616)
T PLN02224 192 YCVNCEEYKDEKELLE---------------------------------------------------------------- 207 (616)
T ss_pred ecCCCCCCCCHHHHcC----------------------------------------------------------------
Confidence 9999987665422210
Q ss_pred ccCcEEecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhH
Q 001289 397 LHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKA 476 (1107)
Q Consensus 397 l~Gk~~~~P~~~~~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~a 476 (1107)
T Consensus 208 -------------------------------------------------------------------------------- 207 (616)
T PLN02224 208 -------------------------------------------------------------------------------- 207 (616)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHcCCeeceeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHh
Q 001289 477 REAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWL 556 (1107)
Q Consensus 477 r~~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl 556 (1107)
-+.|..||.+++.+-+++||++++++++.+.+.+ ++..-.+.|+..++...+||
T Consensus 208 -----------------------~~~~~~~~~~~~~~~e~~~ff~Ls~~~~~L~~~~---~~~~~~~~p~~~~~~~~~~l 261 (616)
T PLN02224 208 -----------------------NNCCPVHQMPCVARKEDNYFFALSKYQKPLEDIL---AQNPRFVQPSYRLNEVQSWI 261 (616)
T ss_pred -----------------------CCCCCCCCCcceEEecceEEEEhHHHHHHHHHHH---HhCCCccCCHHHHHHHHHHH
Confidence 0235567889999999999999999999999998 53333467999999999999
Q ss_pred c-cCCCeeeeecC-CCcccceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccC
Q 001289 557 E-AIRDWCVSRQL-WWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSG 634 (1107)
Q Consensus 557 ~-~l~DWcISRQ~-~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSg 634 (1107)
+ +++||||||.+ .||+|+|.. +..|++||||+.
T Consensus 262 ~~gL~d~~ISR~~~~WGIpvP~~---------------------------------------------~~~viYVWfDAl 296 (616)
T PLN02224 262 KSGLRDFSISRALVDWGIPVPDD---------------------------------------------DKQTIYVWFDAL 296 (616)
T ss_pred hcCCCCccccCCCCCCceECCCC---------------------------------------------CCcEEEEehhhH
Confidence 7 59999999986 899999920 237999999999
Q ss_pred CcccccccCCCCCh----hhhhhCCcCcccccccccch----HHHHHHHHHHHhcCCCCccEEEEcceeeCCCCcccccc
Q 001289 635 LFPLSVLGWPDDTD----DLKAFYPTSVLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKS 706 (1107)
Q Consensus 635 l~p~s~lgwp~~~~----d~~~~yP~dl~~tG~Dil~f----W~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS 706 (1107)
+.|++.++++.+.. .+..|||.++++.|+||++| |++.+++.|+ ..| +.|++||++. .+|+|||||
T Consensus 297 ~~Yls~~~~~~~~~~~~~~~~~~w~~~v~~iGKDii~fH~i~wpa~l~~~g~----~~P-~~i~~~g~l~-~eG~KMSKS 370 (616)
T PLN02224 297 LGYISALTEDNKQQNLETAVSFGWPASLHLIGKDILRFHAVYWPAMLMSAGL----ELP-KMVFGHGFLT-KDGMKMGKS 370 (616)
T ss_pred HHHHHHhcccccccccchhhccCCCcceEEEeecccccHHHHHHHHHHHCCC----CCC-cEEEecccEe-cCCcccccc
Confidence 99999998765322 24568999999999999997 7776554432 335 9999999975 999999999
Q ss_pred CCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHHH
Q 001289 707 LGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGY 786 (1107)
Q Consensus 707 lGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~ 786 (1107)
+||+|+|.++++ +||+|++||||++.++.++|.+|+.+.+...
T Consensus 371 ~GN~i~p~e~l~-------------------------------------~ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~ 413 (616)
T PLN02224 371 LGNTLEPFELVQ-------------------------------------KFGPDAVRYFFLREVEFGNDGDYSEDRFIKI 413 (616)
T ss_pred CCccCCHHHHHH-------------------------------------HcCcHHHHHHHHhcCCCcCCCCCCHHHHHHH
Confidence 999999999998 8999999999999999999999999987543
Q ss_pred --HHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHH
Q 001289 787 --RQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDV 864 (1107)
Q Consensus 787 --r~f~nKl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~ 864 (1107)
..++|.++|.+.+++......+..... ........|+|++++++++++.+.++|++|+|+.|++.+++|+ ..+|+
T Consensus 414 ~NseLan~lgNll~R~l~~~~k~~~~~~~-~~~~~~~~d~~l~~~l~~li~~v~~~me~~~~~~Al~~i~el~--~~~N~ 490 (616)
T PLN02224 414 VNAHLANTIGNLLNRTLGLLKKNCESTLV-EDSTVAAEGVPLKDTVEKLVEKAQTNYENLSLSSACEAVLEIG--NAGNT 490 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCC-CccccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHH
Confidence 349999999987766544322211100 0011245689999999999999999999999999999999995 89999
Q ss_pred HHHhhccccc-CCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCC
Q 001289 865 FIEAIKPYFA-GDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 919 (1107)
Q Consensus 865 Yie~~K~~l~-~~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~ 919 (1107)
|++..+||.. .++.........+..+++.+++.+.+||+|||||+||+||++|+.
T Consensus 491 Yi~~~~PW~l~k~~~~~~~~~~~~l~~l~e~lr~~a~LLaPf~P~~Ae~I~~~Lg~ 546 (616)
T PLN02224 491 YMDQRAPWFLFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQLGY 546 (616)
T ss_pred HHHhCCchhhhccccccHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhCC
Confidence 9999999942 221110012344566788899999999999999999999999985
No 38
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=6.5e-77 Score=680.34 Aligned_cols=338 Identities=34% Similarity=0.642 Sum_probs=311.0
Q ss_pred CcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHH
Q 001289 175 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVS 254 (1107)
Q Consensus 175 ~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~ 254 (1107)
++|+|++|||||||.||||||++++++|+++||+||+|++|++++||||||+|||.++++++.......+.++++++|.+
T Consensus 1 ~~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~ 80 (338)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNA 80 (338)
T ss_pred CCeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999875322223457899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCcccccccccccc
Q 001289 255 EVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVD 334 (1107)
Q Consensus 255 ~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~e 334 (1107)
.|++|+++|.+.+.++|++||+++||+++++|+++.|.+.|+++|.+|+++|+||++.++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~----------------- 143 (338)
T cd00818 81 KCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW----------------- 143 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee-----------------
Confidence 999999999999999999999999999999999999999999999999999999999977766
Q ss_pred cCCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEecCCCCCccceE
Q 001289 335 IPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPII 414 (1107)
Q Consensus 335 ~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~P~~~~~iPIi 414 (1107)
T Consensus 144 -------------------------------------------------------------------------------- 143 (338)
T cd00818 144 -------------------------------------------------------------------------------- 143 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCeecee
Q 001289 415 CDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAK 494 (1107)
Q Consensus 415 ~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~ 494 (1107)
T Consensus 144 -------------------------------------------------------------------------------- 143 (338)
T cd00818 144 -------------------------------------------------------------------------------- 143 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeecCCCcccc
Q 001289 495 DNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQI 574 (1107)
Q Consensus 495 ~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pI 574 (1107)
+++++.++|||++++++++.+++.+ + +++|+|+..++++.+||++++|||||||++||+||
T Consensus 144 --------------~v~~~~~~qwf~~l~~~~~~l~~~~---~--~~~~~P~~~~~~~~~~l~~l~dw~iSR~~~WGip~ 204 (338)
T cd00818 144 --------------PLIYRATPQWFIRVTKIKDRLLEAN---D--KVNWIPEWVKNRFGNWLENRRDWCISRQRYWGTPI 204 (338)
T ss_pred --------------EEEEEecCeEEEEcHHHHHHHHHHH---h--cCcEECHHHHHHHHHHHhcchhcceeeecccCcee
Confidence 2345567899999999999999999 4 57889999999999999999999999999999999
Q ss_pred eeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCCChhhhhhC
Q 001289 575 PAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFY 654 (1107)
Q Consensus 575 P~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~~~~d~~~~y 654 (1107)
|+|+|..++ ... +.++++|+||||||+++|++.++||.++.+|++||
T Consensus 205 P~~~~~~~~-----------~~~----------------------~~~~~~v~~vWfda~~~~~~~~~~~~~~~~~~~~~ 251 (338)
T cd00818 205 PVWYCEDCG-----------EVL----------------------VRRVPDVLDVWFDSGSMPYAQLHYPFENEDFEELF 251 (338)
T ss_pred eEEEecCCC-----------eEE----------------------EecCCceEEEEEeCCCCHHHHcCCCCcchhhhccC
Confidence 999986442 111 14688999999999999999999998778899999
Q ss_pred CcCcccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCccccccccCchhHHHHhhcCCC
Q 001289 655 PTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNL 734 (1107)
Q Consensus 655 P~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl 734 (1107)
|+|++++|+||+++|+.++++.++.+.|..||++|++||++++.+|+|||||+||+|+|.|+++
T Consensus 252 p~d~~~~GkDii~~wf~~~~~~~~~~~~~~p~~~~~~hg~~~~~~g~KmSKS~gn~i~~~~~~~---------------- 315 (338)
T cd00818 252 PADFILEGSDQTRGWFYSLLLLSTALFGKAPYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVD---------------- 315 (338)
T ss_pred CCeEEeecchHHhHHHHHHHHHHHHhcCCCccceEEEEeeEECCCCCCCCCCCCCcCCHHHHHH----------------
Confidence 9999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccc
Q 001289 735 DPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINL 778 (1107)
Q Consensus 735 ~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf 778 (1107)
+||+|++||||++.++.++|++|
T Consensus 316 ---------------------~~~~D~~R~~l~~~~~~~~d~~~ 338 (338)
T cd00818 316 ---------------------KYGADALRLWVASSDVYAEDLRF 338 (338)
T ss_pred ---------------------HcCcHHHHHHHHhCCCccCCCCC
Confidence 89999999999999989999876
No 39
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-75 Score=688.23 Aligned_cols=492 Identities=24% Similarity=0.374 Sum_probs=420.9
Q ss_pred CCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHH
Q 001289 174 KPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFV 253 (1107)
Q Consensus 174 k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~ 253 (1107)
.++|+|++|+|||||.|||||+++++.+|+++||+||+|++|+|++|+|.||.|||..+++ +|++++
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~-----~g~tP~-------- 70 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEK-----EGITPQ-------- 70 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHH-----cCCCHH--------
Confidence 4689999999999999999999999999999999999999999999999999999998864 688875
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCccccccccccc
Q 001289 254 SEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYV 333 (1107)
Q Consensus 254 ~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~ 333 (1107)
+++++++..+++.++.|++|+| .+..|.++.|.+.|+++|.+|+++|+||.+...+.||++|++.|.|.+|+.
T Consensus 71 ----el~d~~~~~~~~~~~~l~IsfD--~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g- 143 (558)
T COG0143 71 ----ELVDKNHEEFKELFKALNISFD--NFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEG- 143 (558)
T ss_pred ----HHHHHHHHHHHHHHHHhCCccc--ccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheec-
Confidence 6789999999999999999999 888899999999999999999999999999999999999999999988863
Q ss_pred ccCCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEecCCCCCccce
Q 001289 334 DIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPI 413 (1107)
Q Consensus 334 e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~P~~~~~iPI 413 (1107)
.||.|+..
T Consensus 144 ---------------------------------------------------------------------~cp~cg~~--- 151 (558)
T COG0143 144 ---------------------------------------------------------------------TCPKCGGE--- 151 (558)
T ss_pred ---------------------------------------------------------------------cCCCcCcc---
Confidence 14554421
Q ss_pred EecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCeece
Q 001289 414 ICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGA 493 (1107)
Q Consensus 414 i~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~ 493 (1107)
+..|.-|++||. ..
T Consensus 152 -----------------------------------------~arGD~Ce~Cg~-------------------------~~ 165 (558)
T COG0143 152 -----------------------------------------DARGDQCENCGR-------------------------TL 165 (558)
T ss_pred -----------------------------------------ccCcchhhhccC-------------------------cC
Confidence 015666889982 22
Q ss_pred eccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHhc-cCCCeeeee-cCCCc
Q 001289 494 KDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLE-AIRDWCVSR-QLWWG 571 (1107)
Q Consensus 494 ~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~-~l~DWcISR-Q~~WG 571 (1107)
.+....-|+|+.||...|.+-++.||++++++.+.+++.+ ++....+.|.+.++.+.+||+ +++|||||| ...||
T Consensus 166 ~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~---~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WG 242 (558)
T COG0143 166 DPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWY---ESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWG 242 (558)
T ss_pred CchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHH---HhCccccCChHHHHHHHHHHHccCcccceecCCCCCC
Confidence 4455567999999999999999999999999999999999 766677899999999999996 599999999 89999
Q ss_pred ccceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCC---CCh
Q 001289 572 HQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPD---DTD 648 (1107)
Q Consensus 572 ~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~---~~~ 648 (1107)
+|+|. . ...|++||||+.+.|++.++... +..
T Consensus 243 ipvP~----~-----------------------------------------p~kv~YVWfDAligYisa~~~~~~~~~~~ 277 (558)
T COG0143 243 IPVPG----D-----------------------------------------PGKVIYVWFDALIGYISALGELAEIGDDE 277 (558)
T ss_pred ccCCC----C-----------------------------------------CCCEEEEeeccHHHHHHHhcchhccCChH
Confidence 99992 0 22699999999999999998763 567
Q ss_pred hhhhhCCcC----cccccccccch----HHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCcccccccc
Q 001289 649 DLKAFYPTS----VLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGI 720 (1107)
Q Consensus 649 d~~~~yP~d----l~~tG~Dil~f----W~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~ 720 (1107)
+|+.|||.+ +++.|+||++| |+++++..++. +| +.|+.||++. .+|+|||||+||||+|.++++
T Consensus 278 ~~~~~W~~~~~e~vhfIGKDii~FHav~wPamL~~~~~~----lP-~~i~ahg~l~-~~G~KmSKSrG~~V~~~~~~~-- 349 (558)
T COG0143 278 DFKKFWPADDTELVHFIGKDIIRFHAVYWPAMLMAAGLP----LP-TRIFAHGFLT-LEGQKMSKSRGNVVDPDELLE-- 349 (558)
T ss_pred HHHhhCCCCCceEEEEeccccCcchhhHHHHHHHhCCCC----CC-CEEEeeeeEE-ECCccccccCCcEEeHHHHHH--
Confidence 899999998 99999999986 88877776665 46 9999999999 899999999999999999998
Q ss_pred CchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHHHHH--HHHHHHHHHH
Q 001289 721 SLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQ--WCNKLWNAVR 798 (1107)
Q Consensus 721 ~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r~--f~nKl~N~~r 798 (1107)
+||+|+|||||+...+.++|.+|+++.+....| +.|++.|.+.
T Consensus 350 -----------------------------------~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~ 394 (558)
T COG0143 350 -----------------------------------QYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLAN 394 (558)
T ss_pred -----------------------------------HcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999987654 8999999988
Q ss_pred HHhhhhCCCC---CCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHHHHhhcccccC
Q 001289 799 FSMSKLGEGF---VPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAG 875 (1107)
Q Consensus 799 f~l~~l~~~~---~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~ 875 (1107)
.+++.....| .|... . ... ..|+.++.....+...+.++|+.++|++|+..+++++ ..+|.||+..+||...
T Consensus 395 R~~~fi~k~~~g~vp~~~-~-~~~-~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~--~~~N~Yi~~~~PW~l~ 469 (558)
T COG0143 395 RTLGFINKYFDGVVPAAG-A-PDL-EEDEELLALAREALEAVAEAMEKYEFRKALEEIMALA--SRANKYIDEQAPWKLA 469 (558)
T ss_pred HHHHHHHhccCCcCCccc-c-ccc-hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHhhcCCCchhh
Confidence 7776544333 33221 1 123 6889999999999999999999999999999999996 8999999999999543
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCC
Q 001289 876 DNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQP 920 (1107)
Q Consensus 876 ~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~ 920 (1107)
.+.. ..+-.++..++..+++.+..||+||||..+++||+.|+..
T Consensus 470 k~~~-~~~~~~vl~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~~ 513 (558)
T COG0143 470 KEDK-RERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLE 513 (558)
T ss_pred ccCc-HHHHHHHHHHHHHHHHHHHHHhcCcCcchHHHHHHHhCCc
Confidence 3210 0022233444445566778899999999999999999863
No 40
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=1.2e-66 Score=591.24 Aligned_cols=312 Identities=39% Similarity=0.704 Sum_probs=289.4
Q ss_pred cEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHH
Q 001289 176 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSE 255 (1107)
Q Consensus 176 ~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~ 255 (1107)
+|+|++|||||||.||||||++++++|+++||+||+|++|++++||||||+||+.++++++ +.......+++|.+.
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~----~~~~~~~~~~~~~~~ 76 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKG----GRKKKTIWIEEFRED 76 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhc----CcccccccHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999998764 333344558999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCccccccccccccc
Q 001289 256 VWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDI 335 (1107)
Q Consensus 256 ~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~e~ 335 (1107)
|++|++++.+.|+++|++||+++||++++.|+++.|.+.|+++|.+|+++|+||++.++|
T Consensus 77 ~~~~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v-------------------- 136 (312)
T cd00668 77 PKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV-------------------- 136 (312)
T ss_pred HHHHHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee--------------------
Confidence 999999999999999999999999999999999999999999999999999999987432
Q ss_pred CCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEecCCCCCccceEe
Q 001289 336 PKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIIC 415 (1107)
Q Consensus 336 ~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~P~~~~~iPIi~ 415 (1107)
T Consensus 137 -------------------------------------------------------------------------------- 136 (312)
T cd00668 137 -------------------------------------------------------------------------------- 136 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCeeceec
Q 001289 416 DAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKD 495 (1107)
Q Consensus 416 d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~~ 495 (1107)
T Consensus 137 -------------------------------------------------------------------------------- 136 (312)
T cd00668 137 -------------------------------------------------------------------------------- 136 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeecCCCcccce
Q 001289 496 NEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIP 575 (1107)
Q Consensus 496 ~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP 575 (1107)
+..+|||++++++++++++.+ +. ..+.|+..++.+.+||++..|||||||++||+|+|
T Consensus 137 -----------------~~~~~~f~~~~~l~~~~~~~~---~~--~~~~p~~~~~~~~~~l~~~~d~~isR~~~WG~~~P 194 (312)
T cd00668 137 -----------------RITEQWFFDMPKFKEKLLKAL---RR--GKIVPEHVKNRMEAWLESLLDWAISRQRYWGTPLP 194 (312)
T ss_pred -----------------EeeeeEEEEcHHHHHHHHHHH---hc--CCcCChHHHHHHHHHHhCCCCeEEeccCCCCCcCC
Confidence 224589999999999999998 54 44899999999999999988999999999999999
Q ss_pred eEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCCChhhhhhCC
Q 001289 576 AWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYP 655 (1107)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~~~~d~~~~yP 655 (1107)
- +|+||||||+++|+++++|+.++.+|+++||
T Consensus 195 ~------------------------------------------------~~i~~Wfds~~~~~~~~~~~~~~~~~~~~~~ 226 (312)
T cd00668 195 E------------------------------------------------DVFDVWFDSGIGPLGSLGYPEEKEWFKDSYP 226 (312)
T ss_pred c------------------------------------------------ccccchhhccHHHHHHcCCCccchhhhhcCC
Confidence 2 6999999999999999999988788999999
Q ss_pred cCcccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCC
Q 001289 656 TSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLD 735 (1107)
Q Consensus 656 ~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~ 735 (1107)
.|++++|.||+|||+.++++++..+.+..||+++++||+|++.+|+|||||+||+|+|.|+++
T Consensus 227 ~di~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~KmSKS~gn~v~~~d~~~----------------- 289 (312)
T cd00668 227 ADWHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVE----------------- 289 (312)
T ss_pred ceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEcCCCccccccCCCcCCHHHHHH-----------------
Confidence 999999999999999999999999988889999999999998888999999999999999998
Q ss_pred hHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccc
Q 001289 736 PKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINL 778 (1107)
Q Consensus 736 ~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf 778 (1107)
+||+||+||||++..+.++|++|
T Consensus 290 --------------------~~~~da~R~~l~~~~~~~~d~~~ 312 (312)
T cd00668 290 --------------------KYGADALRYYLTSLAPYGDDIRL 312 (312)
T ss_pred --------------------HcCcHHHHHHHHhcCCccCCCCC
Confidence 89999999999999989999886
No 41
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-62 Score=537.02 Aligned_cols=475 Identities=23% Similarity=0.349 Sum_probs=392.3
Q ss_pred CCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHH
Q 001289 174 KPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFV 253 (1107)
Q Consensus 174 k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~ 253 (1107)
.+.|++++|..|||..+||||+++.++.|+|+||+|++|..|.|..|+|+||+.||.+++. .|.++.
T Consensus 38 ~~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaat-----nG~~P~-------- 104 (578)
T KOG0436|consen 38 GETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAAT-----NGRNPP-------- 104 (578)
T ss_pred CceeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhh-----cCCChH--------
Confidence 3589999999999999999999999999999999999999999999999999999998864 576653
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCccccccccccc
Q 001289 254 SEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYV 333 (1107)
Q Consensus 254 ~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~ 333 (1107)
+.++.....+.+.++.+|++++ ++..|+||.|.+.|++.+.++.++|+||++.+..+||.+|+|++.+.+|...
T Consensus 105 ----e~cDr~s~~f~qL~k~~gi~yt--~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~ 178 (578)
T KOG0436|consen 105 ----ELCDRISQSFRQLWKDAGIAYT--KFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKN 178 (578)
T ss_pred ----HHHhhhhHHHHHHHHHhCcchh--heeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcC
Confidence 5567777888888999999998 9999999999999999999999999999999999999999999998777421
Q ss_pred ccCCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEecCCCCCccce
Q 001289 334 DIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPI 413 (1107)
Q Consensus 334 e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~P~~~~~iPI 413 (1107)
.- +.
T Consensus 179 p~-----------------------------------------------------------------------~~----- 182 (578)
T KOG0436|consen 179 PC-----------------------------------------------------------------------PP----- 182 (578)
T ss_pred CC-----------------------------------------------------------------------CC-----
Confidence 00 00
Q ss_pred EecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCeece
Q 001289 414 ICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGA 493 (1107)
Q Consensus 414 i~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~ 493 (1107)
...|.|+
T Consensus 183 ---gk~vsmE---------------------------------------------------------------------- 189 (578)
T KOG0436|consen 183 ---GKVVSME---------------------------------------------------------------------- 189 (578)
T ss_pred ---Cceeeec----------------------------------------------------------------------
Confidence 0012222
Q ss_pred eccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHhc-cCCCeeeee--c-CC
Q 001289 494 KDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLE-AIRDWCVSR--Q-LW 569 (1107)
Q Consensus 494 ~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~-~l~DWcISR--Q-~~ 569 (1107)
||.+|...-.+.+|++++.+.+++.+.+ +.+---+.|+...+....||+ +++|..||| + +.
T Consensus 190 ------------sg~~vv~~kE~NY~FrLSkfqk~l~d~l---rkNP~fvqPs~~~~qVl~~lktglpDlSISRpsarl~ 254 (578)
T KOG0436|consen 190 ------------SGNPVVWRKEDNYFFRLSKFQKPLEDHL---RKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSARLD 254 (578)
T ss_pred ------------cCCceeEecccceeeeHHhhhhHHHHHH---hcCCCccCchHHHHHHHHHHHcCCCcccccChhhhcc
Confidence 4566677777899999999999999999 655556889999999999995 799999999 4 89
Q ss_pred CcccceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCC---
Q 001289 570 WGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDD--- 646 (1107)
Q Consensus 570 WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~~--- 646 (1107)
||+|+|. .+.++++||||+.+.|++.+|+|.+
T Consensus 255 WGIPvP~---------------------------------------------ddsQtIYVWfDAL~nYiSvig~~~~~~N 289 (578)
T KOG0436|consen 255 WGIPVPG---------------------------------------------DDSQTIYVWFDALLNYISVIGYPNKQQN 289 (578)
T ss_pred cCCCCCC---------------------------------------------CCcceEEEeHHHHhhHHHhhcCCchhcc
Confidence 9999992 1447999999999999999999963
Q ss_pred -ChhhhhhCCcCcccccccccch----HHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCccccccccC
Q 001289 647 -TDDLKAFYPTSVLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGIS 721 (1107)
Q Consensus 647 -~~d~~~~yP~dl~~tG~Dil~f----W~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~ 721 (1107)
...+..+||++++++|+||++| |+|++|..|+.+ | +.|++||++. .+|.|||||+||||||.++++
T Consensus 290 ~k~~ls~~wPat~HvIGKDIlrFHavYWPafLmaAGlpl----P-~~I~vHghwt-~ngmKMsKSLGNvvdP~~l~~--- 360 (578)
T KOG0436|consen 290 LKTALSFGWPATLHVIGKDILRFHAVYWPAFLMAAGLPL----P-KMIFVHGHWT-KNGMKMSKSLGNVVDPFELVQ--- 360 (578)
T ss_pred ccceeecCCCceeeehhhhhhhhhhhhhHHHHHhcCCCC----c-cEEEEeeeee-ecceecchhhccccCHHHHHH---
Confidence 3467789999999999999986 999999888874 5 9999999998 999999999999999999998
Q ss_pred chhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHHHH--HHHHHHHHHHHH
Q 001289 722 LEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYR--QWCNKLWNAVRF 799 (1107)
Q Consensus 722 l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r--~f~nKl~N~~rf 799 (1107)
.||+|++||||+..+..+.|.+|+++++...+ .+.|+|.|++..
T Consensus 361 ----------------------------------kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnR 406 (578)
T KOG0436|consen 361 ----------------------------------KYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNR 406 (578)
T ss_pred ----------------------------------HhCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998766 489999999988
Q ss_pred Hhhh-hC-CCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHHHHhhcccccCCC
Q 001289 800 SMSK-LG-EGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDN 877 (1107)
Q Consensus 800 ~l~~-l~-~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~~~ 877 (1107)
+++. +. .+..+....+.......+.-+.+.++.+...+.+.|+++.+..|++++.+.. .-.|.|++..+||....+
T Consensus 407 c~gkkln~sn~e~~l~~~s~~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si~--n~~ntlvq~~aPWkl~~d 484 (578)
T KOG0436|consen 407 CLGKKLNISNCESTLVVDSPTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIG--NAGNTLVQQRAPWKLFKD 484 (578)
T ss_pred HhhcccChhccccccccCCcchhhccchHHHHHHHhHHHHHhhcccccHHHHHHHHHHHH--HhhhhhhhhcCCceeccc
Confidence 7763 11 1101100000001223344588899999999999999999999999998875 667999999999954332
Q ss_pred -cccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCC
Q 001289 878 -PAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPK 921 (1107)
Q Consensus 878 -~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~ 921 (1107)
............++..||+.+..||+|+||.++.+|+.+|+...
T Consensus 485 sq~~~~~la~~~~~~le~lrv~~illqpv~Psls~~llsqlgvsk 529 (578)
T KOG0436|consen 485 SQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSLRLLSQLGVSK 529 (578)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHcCCCh
Confidence 22111222334456678888899999999999999999998643
No 42
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=4.3e-61 Score=558.03 Aligned_cols=375 Identities=26% Similarity=0.425 Sum_probs=299.0
Q ss_pred EEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHH
Q 001289 177 FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEV 256 (1107)
Q Consensus 177 f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~ 256 (1107)
|+|++|+|||||.|||||+.+++.+|+++||+||+|++|+++.|+|+||.+++.++++ .|+++
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~-----~g~~p------------ 63 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEK-----QGIDP------------ 63 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHH-----TTS-H------------
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHH-----cCCCH------------
Confidence 7999999999999999999999999999999999999999999999999999988874 57665
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCcccccccccccccC
Q 001289 257 WKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIP 336 (1107)
Q Consensus 257 ~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~e~~ 336 (1107)
.++++++++.|++.|++||+++| ++..|.|+.|.++|+++|.+|+++|+||++...++||+.|++.|+|.+|+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~I~~D--~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g---- 137 (391)
T PF09334_consen 64 EEFCDKYSAKFKELLEALNISYD--RFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEG---- 137 (391)
T ss_dssp HHHHHHHHHHHHHHHHHTT---S--EEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETC----
T ss_pred HHHHHHHHHHHHHHHHHcCCCCc--ceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeec----
Confidence 47899999999999999999999 777899999999999999999999999999999999999999999988753
Q ss_pred CcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEecCCCCCccceEec
Q 001289 337 KREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICD 416 (1107)
Q Consensus 337 ~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~P~~~~~iPIi~d 416 (1107)
.||.|+..
T Consensus 138 ------------------------------------------------------------------~CP~C~~~------ 145 (391)
T PF09334_consen 138 ------------------------------------------------------------------TCPYCGSD------ 145 (391)
T ss_dssp ------------------------------------------------------------------EETTT--S------
T ss_pred ------------------------------------------------------------------cccCcCcc------
Confidence 25555411
Q ss_pred CccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCeeceecc
Q 001289 417 AILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDN 496 (1107)
Q Consensus 417 ~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~~~ 496 (1107)
+..|..|++|| ...++.
T Consensus 146 --------------------------------------~a~g~~Ce~cG-------------------------~~~~~~ 162 (391)
T PF09334_consen 146 --------------------------------------KARGDQCENCG-------------------------RPLEPE 162 (391)
T ss_dssp --------------------------------------SCTTTEETTTS-------------------------SBEECC
T ss_pred --------------------------------------ccCCCcccCCC-------------------------CCcccc
Confidence 12566788888 233456
Q ss_pred ccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHhcc-CCCeeeeecCCCcccce
Q 001289 497 EMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEA-IRDWCVSRQLWWGHQIP 575 (1107)
Q Consensus 497 ~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~~-l~DWcISRQ~~WG~pIP 575 (1107)
+..-|+|..||.+++.+..++||++++++++.+.+.+ ++.... .|+..++...+||++ ++||||||...||+|+|
T Consensus 163 ~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l---~~~~~~-~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI~vP 238 (391)
T PF09334_consen 163 ELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWL---ESNPDF-PPPRVREIVRNWLKEGLPDLSISRPLDWGIPVP 238 (391)
T ss_dssp CSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHH---HHSTTS-SHHHHHHHHHHHHHT----EE-ECTTSSSEEET
T ss_pred cccCCccccccccCccccceEEEEehHHhHHHHHHHH---hcCCCC-CChhHHHHHHHHhhcccCceeeecCCCCcceee
Confidence 6778999999999999999999999999999999988 433221 677777888899975 99999999999999999
Q ss_pred eEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCC----CChhhh
Q 001289 576 AWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPD----DTDDLK 651 (1107)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~----~~~d~~ 651 (1107)
. + +..|++||||+.+.|++.++++. +..+++
T Consensus 239 ~------~---------------------------------------~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~ 273 (391)
T PF09334_consen 239 G------D---------------------------------------PGQVIYVWFDALIGYLTATGYLAEKRGDPEEFK 273 (391)
T ss_dssp T------E---------------------------------------EEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHH
T ss_pred c------c---------------------------------------CCceEEEcchHHHHHHHHhccccccccccchhh
Confidence 2 0 22699999999999999998875 456788
Q ss_pred hhCC-----cCcccccccccch----HHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCccccccccCc
Q 001289 652 AFYP-----TSVLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISL 722 (1107)
Q Consensus 652 ~~yP-----~dl~~tG~Dil~f----W~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l 722 (1107)
.||+ ..+++.|+||++| |++.+++.++ .+| +.+++||+++ .+|+|||||+||+|+|.|+++
T Consensus 274 ~~w~~~~~~~~v~~iGkDi~~fH~i~~pa~l~a~~~----~lP-~~i~~~~~~~-~~g~K~SkS~gn~i~~~~~~~---- 343 (391)
T PF09334_consen 274 KWWANDSDVEIVHFIGKDIIRFHAIYWPAMLLAAGL----PLP-RRIVVHGFLT-LDGEKMSKSRGNVIWPDDLLE---- 343 (391)
T ss_dssp HHHCST--SEEEEEEEGGGHHHHHTHHHHHHHHCTB--------SEEEEE--EE-ETTCCEETTTTESSBHHHHHH----
T ss_pred hhccccCCceEEEEEccchhHHHHHHhHHHHhcccC----CCC-CEEEeeeeEE-ECCeeccccCCcccCHHHHHH----
Confidence 8882 2399999999987 5555544333 345 9999999999 899999999999999999998
Q ss_pred hhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHHHHH--HHHHHHHHHHHH
Q 001289 723 EGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQ--WCNKLWNAVRFS 800 (1107)
Q Consensus 723 ~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r~--f~nKl~N~~rf~ 800 (1107)
+||+|++||||++.++.++|.+|+.+.+....| +.|++.|++.++
T Consensus 344 ---------------------------------~~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~~~~gNl~~R~ 390 (391)
T PF09334_consen 344 ---------------------------------EYGADALRYYLAREGPEGQDSDFSWEDFIERVNNELANTLGNLVNRV 390 (391)
T ss_dssp ---------------------------------HH-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCCCCHHHHHHHH
T ss_pred ---------------------------------hCChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhhhhHHhcc
Confidence 899999999999999999999999999876433 778888887665
Q ss_pred h
Q 001289 801 M 801 (1107)
Q Consensus 801 l 801 (1107)
+
T Consensus 391 ~ 391 (391)
T PF09334_consen 391 L 391 (391)
T ss_dssp H
T ss_pred C
Confidence 3
No 43
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=3.8e-59 Score=530.93 Aligned_cols=313 Identities=26% Similarity=0.395 Sum_probs=273.0
Q ss_pred cEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHH
Q 001289 176 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSE 255 (1107)
Q Consensus 176 ~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~ 255 (1107)
+|+|++|||||||.|||||++++++.|+++||+||+|++|++++|+|+||++|+..+++ .|+++
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~-----~g~~~----------- 64 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEE-----EGVTP----------- 64 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHH-----cCCCH-----------
Confidence 58999999999999999999999999999999999999999999999999999988864 46654
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCccccccccccccc
Q 001289 256 VWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDI 335 (1107)
Q Consensus 256 ~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~e~ 335 (1107)
.++++.+.+.|++++++||+++| .++.|+++.|...|+++|.+|+++|+||++...++|||.|+++|+
T Consensus 65 -~e~~~~~~~~~~~~l~~LgI~~D--~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~--------- 132 (319)
T cd00814 65 -QELCDKYHEIFKDLFKWLNISFD--YFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP--------- 132 (319)
T ss_pred -HHHHHHHHHHHHHHHHHcCCcCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee---------
Confidence 47889999999999999999877 677899999999999999999999999999999999999887766
Q ss_pred CCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEecCCCCCccceEe
Q 001289 336 PKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIIC 415 (1107)
Q Consensus 336 ~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~P~~~~~iPIi~ 415 (1107)
T Consensus 133 -------------------------------------------------------------------------------- 132 (319)
T cd00814 133 -------------------------------------------------------------------------------- 132 (319)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCeeceec
Q 001289 416 DAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKD 495 (1107)
Q Consensus 416 d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~~ 495 (1107)
T Consensus 133 -------------------------------------------------------------------------------- 132 (319)
T cd00814 133 -------------------------------------------------------------------------------- 132 (319)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHhcc-CCCeeeeecC-CCccc
Q 001289 496 NEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEA-IRDWCVSRQL-WWGHQ 573 (1107)
Q Consensus 496 ~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~~-l~DWcISRQ~-~WG~p 573 (1107)
|++.++|||++++++++.+++.+ +++...+.|+..++.+.+||++ ++|||||||+ +||+|
T Consensus 133 ---------------e~~~~~~~ff~l~~~~~~l~~~~---~~~~~~~~p~~~~~~~~~~l~~~l~d~~isR~~~~WGip 194 (319)
T cd00814 133 ---------------EWREEEHYFFRLSKFQDRLLEWL---EKNPDFIWPENARNEVLSWLKEGLKDLSITRDLFDWGIP 194 (319)
T ss_pred ---------------EEEeeeeEEEEhHHHHHHHHHHH---HhCCccCCCHHHHHHHHHHHhCCCcccCCCccCcccCee
Confidence 12234689999999999999998 6666568999999999999986 9999999999 99999
Q ss_pred ceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCCCh----h
Q 001289 574 IPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTD----D 649 (1107)
Q Consensus 574 IP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~~~~----d 649 (1107)
+|. + +.+|++|||||.+.|++..+++.... .
T Consensus 195 vp~------~---------------------------------------~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~ 229 (319)
T cd00814 195 VPL------D---------------------------------------PGKVIYVWFDALIGYISATGYYNEEWGNSWW 229 (319)
T ss_pred CCC------C---------------------------------------CCcEEEEehhhHHHHHHHcccccccccchhh
Confidence 994 0 23799999999999999999876432 3
Q ss_pred hhhhCCcCcccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCccccccccCchhHHHHh
Q 001289 650 LKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRL 729 (1107)
Q Consensus 650 ~~~~yP~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l 729 (1107)
+...+|.+++++|+||++||.....++-+. .|..|++.+++||+++ .+|+|||||+||+|+|.++++
T Consensus 230 ~~~~~~~~v~~~G~D~~~fh~~~~pa~l~~-~~~~~~~~~~~~~~~~-~~g~kmSkS~gn~i~~~~~l~----------- 296 (319)
T cd00814 230 WKDGWPELVHFIGKDIIRFHAIYWPAMLLG-AGLPLPTRIVAHGYLT-VEGKKMSKSRGNVVDPDDLLE----------- 296 (319)
T ss_pred hhcCCCceEEEEeechhhhhHHHHHHHHHh-CCCCCCcEeeeeeeEE-ECCeeecccCCcccCHHHHHH-----------
Confidence 566789999999999999743322222111 2356789999999999 569999999999999999998
Q ss_pred hcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccc
Q 001289 730 EEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINL 778 (1107)
Q Consensus 730 ~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf 778 (1107)
.||+|++||||++.++.++|.||
T Consensus 297 --------------------------~~~~d~~R~~l~~~~~~~~d~~f 319 (319)
T cd00814 297 --------------------------RYGADALRYYLLRERPEGKDSDF 319 (319)
T ss_pred --------------------------HcCchHHHHHHHhcCCCCCCCCC
Confidence 89999999999999999999987
No 44
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=4.6e-55 Score=496.03 Aligned_cols=296 Identities=30% Similarity=0.487 Sum_probs=257.3
Q ss_pred cEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHH
Q 001289 176 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSE 255 (1107)
Q Consensus 176 ~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~ 255 (1107)
+|+|++|||||||.+||||+++++++|+++||+||+|++|++++|+|+||+|++..+++ .|.+
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~-----~g~~------------ 63 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIK-----IGRD------------ 63 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHH-----cCCC------------
Confidence 69999999999999999999999999999999999999999999999999999887764 3543
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCccccccccccccc
Q 001289 256 VWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDI 335 (1107)
Q Consensus 256 ~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~e~ 335 (1107)
|.+|++++.+.++++|++||+++||.+.+.|++|.|.++|+++|.+|+++|+||++.++|+||
T Consensus 64 ~~e~~~~~~~~~~~~~~~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~----------------- 126 (314)
T cd00812 64 PEDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWC----------------- 126 (314)
T ss_pred HHHHHHHHHHHHHHHHHHhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeee-----------------
Confidence 679999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEecCCCCCccceEe
Q 001289 336 PKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIIC 415 (1107)
Q Consensus 336 ~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~P~~~~~iPIi~ 415 (1107)
T Consensus 127 -------------------------------------------------------------------------------- 126 (314)
T cd00812 127 -------------------------------------------------------------------------------- 126 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCeeceec
Q 001289 416 DAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKD 495 (1107)
Q Consensus 416 d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~~ 495 (1107)
T Consensus 127 -------------------------------------------------------------------------------- 126 (314)
T cd00812 127 -------------------------------------------------------------------------------- 126 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccceeccCCCeeEecccccccccc--cHHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeecCCCccc
Q 001289 496 NEMRLGLCSRSNDVVEPMIKPQWYVNC--NSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQ 573 (1107)
Q Consensus 496 ~~~~~p~c~Rs~~~ie~~~~~QWfv~~--~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~p 573 (1107)
+.++|||+++ +++++.+.+++ + .+.+.|+..++.+.+||+ ||||++||+|
T Consensus 127 -----------------~~~~~~f~~l~~~~~~~~l~~~l---~--~~~~~p~~~~~~~~~~l~------isR~~~wGip 178 (314)
T cd00812 127 -----------------KLLDQWFLKYSETEWKEKLLKDL---E--KLDGWPEEVRAMQENWIG------CSRQRYWGTP 178 (314)
T ss_pred -----------------CccceEEEEcCcHHHHHHHHHHH---H--hcCcCCHHHHHHHHHHhe------eeeecCCcCC
Confidence 0125899999 89999999999 4 345799999999999997 9999999999
Q ss_pred ceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccc-cC----C----
Q 001289 574 IPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVL-GW----P---- 644 (1107)
Q Consensus 574 IP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~l-gw----p---- 644 (1107)
+|+ .+|+|+||||.++++.++ ++ +
T Consensus 179 vP~-----------------------------------------------~~~i~~w~ds~~y~~~y~~~~~~~~~~~~~ 211 (314)
T cd00812 179 IPW-----------------------------------------------TDTMESLSDSTWYYARYTDAHNLEQPYEGD 211 (314)
T ss_pred cCc-----------------------------------------------ccccccccccHHHHHHHHhcccccCcchhh
Confidence 993 169999999998654443 12 2
Q ss_pred --CCChhhhhhCCcCcccccccccchHHHHHHHHHHHh--cC---CCCccEEEEcceeeCCCCccccccCCCccCccccc
Q 001289 645 --DDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKL--GG---EVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVI 717 (1107)
Q Consensus 645 --~~~~d~~~~yP~dl~~tG~Dil~fW~armi~~~~~l--~g---~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI 717 (1107)
...++|++|||.|++++|+||++||...+++....+ .| ..|++++++||+|+ .+|+|||||+||+|+|.|++
T Consensus 212 ~~~~~~~~~~w~p~di~v~G~D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~~~~g~v~-~~g~KmSkS~Gn~v~~~dll 290 (314)
T cd00812 212 LEFDREEFEYWYPVDIYIGGKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGLIVQGMVL-LEGEKMSKSKGNVVTPDEAI 290 (314)
T ss_pred hhhhHHHHHHhCCCeeeecchhHHHHHHHHHHHHHHHHcCcccccccCcHHheecceEe-cCccccCCcCCCCCCHHHHH
Confidence 123468999999999999999998865444444444 33 24679999999999 68999999999999999999
Q ss_pred cccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccH
Q 001289 718 NGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDI 780 (1107)
Q Consensus 718 ~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~ 780 (1107)
+ ++|+||+||||++.++ .|++|++
T Consensus 291 ~-------------------------------------~~~~Da~R~~ll~~~~--~~~~f~~ 314 (314)
T cd00812 291 K-------------------------------------KYGADAARLYILFAAP--PDADFDW 314 (314)
T ss_pred H-------------------------------------HhCcHHHHHHHHhcCC--cCCCCCC
Confidence 9 8999999999998877 6888874
No 45
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.1e-43 Score=384.54 Aligned_cols=495 Identities=18% Similarity=0.239 Sum_probs=373.0
Q ss_pred CCCcEEEECCCCCCCCCCCchhhHH-hHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHH
Q 001289 173 SKPSFVIVLPPPNVTGALHIGHALT-TAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQ 251 (1107)
Q Consensus 173 ~k~~f~i~~pPPyvnG~LHiGHal~-~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~ 251 (1107)
++..-+|+..-||+|..+|+|+... ...+|+++||.+.+|++.++++|+|+.|.+|+..+ -++|.+|+
T Consensus 12 n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetka-----leeg~tP~------ 80 (567)
T KOG1247|consen 12 NERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKA-----LEEGLTPQ------ 80 (567)
T ss_pred CccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHH-----HHccCCHH------
Confidence 4457889999999999999999886 55599999999999999999999999999997655 25788875
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCccccccccc
Q 001289 252 FVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVD 331 (1107)
Q Consensus 252 f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe 331 (1107)
+.+++|+...+....-+++++| .+-+|+.+...+.+|.+|.+||++|+.-...--+.+|..|++.|+|..|+
T Consensus 81 ------elcdKyh~ihk~vy~Wf~IdfD--~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~ve 152 (567)
T KOG1247|consen 81 ------ELCDKYHGIHKVVYDWFKIDFD--EFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVE 152 (567)
T ss_pred ------HHHHhcchhHHHHHHhhccccc--ccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhhh
Confidence 5688999999999999998888 56679999999999999999999999999999999999999999997775
Q ss_pred ccccCCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEecCCCCCcc
Q 001289 332 YVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKI 411 (1107)
Q Consensus 332 ~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~P~~~~~i 411 (1107)
. .+|+|+..
T Consensus 153 g----------------------------------------------------------------------~cp~C~yd- 161 (567)
T KOG1247|consen 153 G----------------------------------------------------------------------KCPFCGYD- 161 (567)
T ss_pred c----------------------------------------------------------------------cCCCCCCc-
Confidence 3 26666531
Q ss_pred ceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCee
Q 001289 412 PIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYR 491 (1107)
Q Consensus 412 PIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~ 491 (1107)
|..|..|++|| ..
T Consensus 162 -------------------------------------------~ARGDqcd~cG-~l----------------------- 174 (567)
T KOG1247|consen 162 -------------------------------------------DARGDQCDKCG-KL----------------------- 174 (567)
T ss_pred -------------------------------------------cccchhhhhhh-hh-----------------------
Confidence 12677788888 11
Q ss_pred ceeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHh-ccCCCeeeeecCCC
Q 001289 492 GAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWL-EAIRDWCVSRQLWW 570 (1107)
Q Consensus 492 ~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl-~~l~DWcISRQ~~W 570 (1107)
....+...|.|.-|..-.+++-+..-|+.++.+..++.+++. ++..-.-...+..+....|| ++++..||||.+-|
T Consensus 175 -~N~~el~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~--~~~~~~~WS~Na~~it~sWlk~gl~pRCiTRDLkW 251 (567)
T KOG1247|consen 175 -VNAAELKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLR--RTLVEGDWSQNAQNITRSWLKDGLKPRCITRDLKW 251 (567)
T ss_pred -cCHHHhcCcchheeccCCeeeeeeEEEEEhHHhHHHHHHHHH--hccccCCCccchHHHHHHHHHcccccccccccccc
Confidence 112234568899888888999999999999999999988882 11111124556678889999 57999999999999
Q ss_pred cccceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCCChhh
Q 001289 571 GHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDL 650 (1107)
Q Consensus 571 G~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~~~~d~ 650 (1107)
|+|+|. + +| ...||+||||+-+.|+|.+. +-+++|
T Consensus 252 GtpVPl-----e-----------------------------~f---------k~KVfYVWFDA~IGYlsit~--~yt~ew 286 (567)
T KOG1247|consen 252 GTPVPL-----E-----------------------------KF---------KDKVFYVWFDAPIGYLSITK--NYTDEW 286 (567)
T ss_pred CCCcCh-----h-----------------------------hh---------cccEEEEEEcCcceEEEeeh--hhhHHH
Confidence 999994 0 11 33699999999998888764 235788
Q ss_pred hhhCCcC-----cccccccccchHHHHHHHHHHHhcCCCCc-cEEEEcceeeCCCCccccccCCCccCccccccccCchh
Q 001289 651 KAFYPTS-----VLETGHDILFFWVARMVMLGIKLGGEVPF-TKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEG 724 (1107)
Q Consensus 651 ~~~yP~d-----l~~tG~Dil~fW~armi~~~~~l~g~~PF-k~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~ 724 (1107)
++||-.- +.+.|+|.+-|+-..+-..-+....+-+- +++-..-+ +.-+..|+|||+|-+|-..++.++
T Consensus 287 ~kWwknpE~v~LyqFmgKDNVpFHtviFP~s~lgt~en~t~v~~l~aTeY-LnyE~gKFSKSrgvGvFG~~aqd~----- 360 (567)
T KOG1247|consen 287 EKWWKNPENVELYQFMGKDNVPFHTVIFPCSQLGTEENYTVVHHLSATEY-LNYEDGKFSKSRGVGVFGNDAQDT----- 360 (567)
T ss_pred HHHhcCHhhhhHHHHhccCCCcceeeecchhhhcCCCCchhheeechhhh-hccccCcccccccccccccccccC-----
Confidence 8888533 34567887665433322221111111121 11111112 224567999999999999998874
Q ss_pred HHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHHH--HHHHHHHHHHHHHHhh
Q 001289 725 LHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGY--RQWCNKLWNAVRFSMS 802 (1107)
Q Consensus 725 l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~--r~f~nKl~N~~rf~l~ 802 (1107)
..++|..||||+...+.++|.+|+++.+..- ..++|.|.|++..+++
T Consensus 361 -------------------------------gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NLGNFvNR~l~ 409 (567)
T KOG1247|consen 361 -------------------------------GIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNLGNFVNRVLK 409 (567)
T ss_pred -------------------------------CCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5669999999999999999999999988653 3488888888766665
Q ss_pred hhCC---CCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHHHHhhcccc-cCCCc
Q 001289 803 KLGE---GFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYF-AGDNP 878 (1107)
Q Consensus 803 ~l~~---~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l-~~~~~ 878 (1107)
.... +.+|.. .++.-|+-++...+.+..+..++||.-.+++|++.+|+. ....|.||+..+.+- +..+.
T Consensus 410 fv~~~~~g~Vp~~-----~~~~~~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m~i--s~~GNqylQ~~~~~k~~~~~r 482 (567)
T KOG1247|consen 410 FVAAKYNGVVPEM-----ELTSGDKKLLEDVNELLAKYVAAMEKVKLREALKTAMEI--SRRGNQYLQENTDNKLYEESR 482 (567)
T ss_pred HHHHhhCCcccce-----eecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhHHHhcccccchhhhcc
Confidence 5433 234432 334458889999999999999999999999999999987 588999999887442 11111
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCC
Q 001289 879 AFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 919 (1107)
Q Consensus 879 ~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~ 919 (1107)
. ....+..+-..++-.+..||+||||.++.+|..+|.-
T Consensus 483 ~---r~~~vi~~a~nii~lvs~ll~P~mP~~s~~I~kqlnl 520 (567)
T KOG1247|consen 483 Q---RAGTVIGLAANIIYLVSVLLYPYMPTTSAEILKQLNL 520 (567)
T ss_pred c---ccceeeehhhHHHHHHHHHhccccccchHHHHHHhCC
Confidence 1 1111122223344456779999999999999999875
No 46
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.4e-41 Score=403.53 Aligned_cols=353 Identities=22% Similarity=0.321 Sum_probs=270.8
Q ss_pred CCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHH
Q 001289 173 SKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQF 252 (1107)
Q Consensus 173 ~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f 252 (1107)
++.++++|.|. |+|.+|||||+++++.|+++||+||+||+|+|+.|+|.+|-+|...++ +.|.+
T Consensus 22 ~~v~~yvcgPt--vy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~-----~~g~~--------- 85 (463)
T PRK00260 22 GKVKMYVCGPT--VYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRAN-----EEGES--------- 85 (463)
T ss_pred CcceEEEeCCc--cCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHH-----HcCCC---------
Confidence 34567777655 569999999999999999999999999999999999999999866553 34654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-ccccCCccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCccccccccc
Q 001289 253 VSEVWKWKDEYGGTILRQQRRLGA-SLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVD 331 (1107)
Q Consensus 253 ~~~~~~w~~~~~~~i~~ql~~lG~-s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe 331 (1107)
|+++++.|.+.+.++|++||+ +.||.... | .|...+++++.+|+++|++|++..+|+||+..-
T Consensus 86 ---~~e~~~~~~~~f~~~~~~Lgi~~~d~~~r~-t---~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~--------- 149 (463)
T PRK00260 86 ---IKELTERYIAAFHEDMDALNVLPPDIEPRA-T---EHIPEIIELIERLIDKGHAYEADGDVYFDVRKF--------- 149 (463)
T ss_pred ---HHHHHHHHHHHHHHHHHHcCCCCCCccccc-c---ccHHHHHHHHHHHHHCCCEEEecCeEEEecccc---------
Confidence 568899999999999999999 56764322 2 478889999999999999999999999998732
Q ss_pred ccccCCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEecCCCCCcc
Q 001289 332 YVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKI 411 (1107)
Q Consensus 332 ~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~P~~~~~i 411 (1107)
|. +|.| .|.....=..+..
T Consensus 150 ------------~~------yg~l------------------------------------------s~~~~~~~~~~~~- 168 (463)
T PRK00260 150 ------------PD------YGKL------------------------------------------SGRNLDELQAGAR- 168 (463)
T ss_pred ------------cc------cccC------------------------------------------CCCCHHHHhccCc-
Confidence 11 1221 1110000000100
Q ss_pred ceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCee
Q 001289 412 PIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYR 491 (1107)
Q Consensus 412 PIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~ 491 (1107)
|+.+.+ -++|.||.++|+.+ +|
T Consensus 169 --------~~~~~~--------K~~~~DF~Lwk~~~----------------~~-------------------------- 190 (463)
T PRK00260 169 --------VEVAEE--------KRDPLDFALWKAAK----------------PG-------------------------- 190 (463)
T ss_pred --------CCcccC--------CCCccccceecCCC----------------CC--------------------------
Confidence 111111 46788888876431 12
Q ss_pred ceeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeecCCCc
Q 001289 492 GAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWG 571 (1107)
Q Consensus 492 ~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG 571 (1107)
+.. | .--||
T Consensus 191 ------------------------------------------------~~~-------------------w----~s~~g 199 (463)
T PRK00260 191 ------------------------------------------------EPS-------------------W----ESPWG 199 (463)
T ss_pred ------------------------------------------------CCC-------------------C----CCCCC
Confidence 000 0 11356
Q ss_pred ccceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCCChhhh
Q 001289 572 HQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLK 651 (1107)
Q Consensus 572 ~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~~~~d~~ 651 (1107)
.--|.||++ |. | +-...+|
T Consensus 200 ~grpgWhie-cs---------------------a------------------------------m~~~~lg--------- 218 (463)
T PRK00260 200 KGRPGWHIE-CS---------------------A------------------------------MSTKYLG--------- 218 (463)
T ss_pred CCCCChhHH-HH---------------------H------------------------------HHHHhcC---------
Confidence 667888764 10 0 0001122
Q ss_pred hhCCcCcccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCccccccccCchhHHHHhhc
Q 001289 652 AFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEE 731 (1107)
Q Consensus 652 ~~yP~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~ 731 (1107)
-|.|++.+|.|++|.|..++++.+..++| .||.++++|+.+++.+|+|||||+||+|+|.|+++
T Consensus 219 --~~~Dih~gG~DlifpHh~neiaqs~a~~g-~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~------------- 282 (463)
T PRK00260 219 --ETFDIHGGGADLIFPHHENEIAQSEAATG-KPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLK------------- 282 (463)
T ss_pred --CCcceecCccccCCCchHhHHHHHHHhcC-CCcceEEEEccEEccCCCcccCcCCCCCCHHHHHH-------------
Confidence 26789999999999999999999999999 89999999988889999999999999999999998
Q ss_pred CCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCC
Q 001289 732 GNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPP 811 (1107)
Q Consensus 732 ~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r~f~nKl~N~~rf~l~~l~~~~~p~ 811 (1107)
+||+|++||++++ +...++++|+.+.+...++++++|||+++++..
T Consensus 283 ------------------------~~~~d~lR~~ll~-~~~~~~~~fs~~~l~~a~~~~~rl~~~~~~~~~--------- 328 (463)
T PRK00260 283 ------------------------KYDPEVLRFFLLS-AHYRSPLNFSEEALEQAKKALERLYNALAETAL--------- 328 (463)
T ss_pred ------------------------HcCchHhHHHHHh-CCCCCCCccCHHHHHHHHHHHHHHHHHHHHhhh---------
Confidence 8999999999997 667889999999999999999999999988741
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHhHhHHHHHh
Q 001289 812 LKLHPHNLPFSCKWILSVLNKAISRTASSLN-SYEFSDAASTVYSWWQYQFCDVFIEA 868 (1107)
Q Consensus 812 ~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e-~~~f~~a~~~i~~f~~~~l~d~Yie~ 868 (1107)
...|+|++++++.++..+.++|+ +|+++.|+..|++|+ ...|.|+..
T Consensus 329 --------~~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~l~~lv--~~~n~~~~~ 376 (463)
T PRK00260 329 --------GEDDEALLAELEEFKERFIEAMDDDFNTPEALAVLFELA--REINRALET 376 (463)
T ss_pred --------ccchhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HHHHHHhhc
Confidence 12568999999999999999995 899999999999996 445677653
No 47
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=2.5e-36 Score=368.55 Aligned_cols=380 Identities=18% Similarity=0.255 Sum_probs=281.5
Q ss_pred cccCCCCCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHH-hcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCc
Q 001289 166 FIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRR-MSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTR 244 (1107)
Q Consensus 166 f~~~~~~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~r-m~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~ 244 (1107)
|.|.. .++=.+|+|.|-+| +.+|||||++++..|++.||.| +.||+|.|+.|+|.+|-.|...++ +.|.+.
T Consensus 53 f~p~~-~~~v~~Y~CGPTvY--d~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~-----~~g~~~ 124 (651)
T PTZ00399 53 FVPQN-GRQVRWYTCGPTVY--DSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAR-----EEKLSI 124 (651)
T ss_pred cccCC-CCeeEEEEeCCCcc--CCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHH-----HhCCCc
Confidence 55543 23347999998888 9999999999999999999999 999999999999999999866654 356651
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCcc
Q 001289 245 HDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTA 324 (1107)
Q Consensus 245 ~d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~Ta 324 (1107)
++++++.|.+.+.+.|++||+..+ ..+.|. .+|...|..++.+|.++|++|.+..-|+++...
T Consensus 125 -----------~~el~~~~~~~f~~d~~~Lni~~p--~~~~r~-tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~--- 187 (651)
T PTZ00399 125 -----------FLELARKWEKEFFEDMKALNVRPP--DVITRV-SEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEA--- 187 (651)
T ss_pred -----------HHHHHHHHHHHHHHHHHHcCCCCC--ccccCc-CccHHHHHHHHHHHHHCCCEEEECCeEEEEchh---
Confidence 246788899999999999999887 333333 689999999999999999999987666665531
Q ss_pred cccccccccccCCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEec
Q 001289 325 ISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIH 404 (1107)
Q Consensus 325 Lsd~EVe~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~ 404 (1107)
|... ...|..| .
T Consensus 188 ---------------------f~~~-----------------------------------------~~~Yg~L------~ 199 (651)
T PTZ00399 188 ---------------------FRKA-----------------------------------------GHVYPKL------E 199 (651)
T ss_pred ---------------------cccc-----------------------------------------hhhHHhh------C
Confidence 0000 0001111 1
Q ss_pred CCCCCccceEecCccccCCCCCCce-ecC-CCCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHH
Q 001289 405 PFNGRKIPIICDAILVDPKFGTGAV-KIT-PAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNE 482 (1107)
Q Consensus 405 P~~~~~iPIi~d~~~Vd~~~GTG~V-~~t-PaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~ 482 (1107)
|-..+. ...+.-|.|.+ ... =..++.||.+++... .
T Consensus 200 p~~~~~--------~~~~~~g~~~l~~~~~~Kr~~~DFaLWk~~k----------------p------------------ 237 (651)
T PTZ00399 200 PESVAD--------EDRIAEGEGALGKVSGEKRSPNDFALWKASK----------------P------------------ 237 (651)
T ss_pred hhhcCC--------HHHHhcccCCccccCcCCCCCccHHhhCCCC----------------C------------------
Confidence 111111 12233344422 222 255667776664210 0
Q ss_pred HHHHcCCeeceeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCe
Q 001289 483 ALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDW 562 (1107)
Q Consensus 483 ~L~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DW 562 (1107)
++.. |
T Consensus 238 --------------------------------------------------------gep~-------------------W 242 (651)
T PTZ00399 238 --------------------------------------------------------GEPS-------------------W 242 (651)
T ss_pred --------------------------------------------------------CCCC-------------------C
Confidence 1100 1
Q ss_pred eeeecCCCcccceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCccccccc
Q 001289 563 CVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLG 642 (1107)
Q Consensus 563 cISRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lg 642 (1107)
- --||---|.||++ |- .+-..++|
T Consensus 243 ~----SpwG~GrPGWHiE-Cs---------------------------------------------------am~~~~lg 266 (651)
T PTZ00399 243 D----SPWGKGRPGWHIE-CS---------------------------------------------------AMASNILG 266 (651)
T ss_pred C----CCCCCCCCCchHH-HH---------------------------------------------------HHHHHHcC
Confidence 1 2466667888764 20 00011123
Q ss_pred CCCCChhhhhhCCcCcccccccccchHHHHHHHHHHHhcCCCCccEEEEc-ceeeCCCCccccccCCCccCccccccccC
Q 001289 643 WPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLH-PMIRDAHGRKMSKSLGNVIDPLEVINGIS 721 (1107)
Q Consensus 643 wp~~~~d~~~~yP~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~H-g~v~D~~G~KMSKSlGNvIdP~dvI~g~~ 721 (1107)
+|.|++..|.|++|-+.-.-++.+.+++|+.||.++++| |||. .+|+|||||+||+|+|.|+++
T Consensus 267 -----------~~~DIh~gG~DL~FPHHeNEiAQseA~~~~~~~v~y~~H~G~L~-i~G~KMSKSLGNfItp~dlLe--- 331 (651)
T PTZ00399 267 -----------DPIDIHSGGIDLKFPHHDNELAQSEAYFDKHQWVNYFLHSGHLH-IKGLKMSKSLKNFITIRQALS--- 331 (651)
T ss_pred -----------CcceeeccCCCCCCCcchhHHHHHHHhhCCCCCCcEEEEEEEEE-eccchhhhcCCCcccHHHHHH---
Confidence 378999999999999999999999999999999999999 9976 899999999999999999998
Q ss_pred chhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHHHHHHHHHHHHHHHHHh
Q 001289 722 LEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSM 801 (1107)
Q Consensus 722 l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r~f~nKl~N~~rf~l 801 (1107)
+||+|+|||+|++. ..+.|++|+.+.+....+..++++|.+..+.
T Consensus 332 ----------------------------------kygaDaLR~~lLs~-~~~~dldFS~e~l~~a~~~~~~l~n~~~rl~ 376 (651)
T PTZ00399 332 ----------------------------------KYTARQIRLLFLLH-KWDKPMNYSDESMDEAIEKDKVFFNFFANVK 376 (651)
T ss_pred ----------------------------------HcChHHHHHHHHhc-CCCCCCccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999964 8889999999999999888899999887765
Q ss_pred hhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhHhHHHHH
Q 001289 802 SKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSL-NSYEFSDAASTVYSWWQYQFCDVFIE 867 (1107)
Q Consensus 802 ~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~-e~~~f~~a~~~i~~f~~~~l~d~Yie 867 (1107)
..+.....+. .......|+|++..++.+...+.++| ++|+++.|+..|++|+ ..+|.|++
T Consensus 377 s~l~~~~~~~----~~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~L~eLv--~~~N~yi~ 437 (651)
T PTZ00399 377 IKLRESELTS----PQKWTQHDFELNELFEETKSAVHAALLDNFDTPEALQALQKLI--SATNTYLN 437 (651)
T ss_pred HHHhhccccc----cccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HHHHHHHh
Confidence 5443211110 11235679999999999999999999 7799999999999997 56899996
No 48
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=100.00 E-value=4e-36 Score=356.27 Aligned_cols=356 Identities=19% Similarity=0.244 Sum_probs=256.4
Q ss_pred cccCCCCCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCcc
Q 001289 166 FIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRH 245 (1107)
Q Consensus 166 f~~~~~~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~ 245 (1107)
|.|.. .++.++|+|.| +|+|.+|||||++++..|+++||+|++||+|.++.|+|.+|-+|...++ ++|+++
T Consensus 14 f~p~~-~~~v~~yvcgp--tvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~-----~~g~~~- 84 (465)
T TIGR00435 14 FEPLV-QGKVKMYVCGP--TVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRAR-----ENGESV- 84 (465)
T ss_pred cccCC-CCcceEEEecC--ccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHH-----HcCCCH-
Confidence 55443 34557777775 6678999999999999999999999999999999999999999866553 457765
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEee-eeeeecCCCCcc
Q 001289 246 DIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL-RLVNWDCVLRTA 324 (1107)
Q Consensus 246 d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~-~~V~W~p~~~Ta 324 (1107)
+++++.|...+.+++++||+++|+-....| .|...+.++|.+|.++|++|... ..|+||+.+-.
T Consensus 85 -----------~e~a~~~~~~f~~dl~~LgI~~d~~~~raT---~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~~- 149 (465)
T TIGR00435 85 -----------YEVSERFIEAYFEDMKALNVLPPDLEPRAT---EHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFK- 149 (465)
T ss_pred -----------HHHHHHHHHHHHHHHHHhCCCCCcCCcccc---ccHHHHHHHHHHHHHCCCEEEecCCcEEEeccccc-
Confidence 467899999999999999999995333333 68889999999999999999998 89999987421
Q ss_pred cccccccccccCCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEec
Q 001289 325 ISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIH 404 (1107)
Q Consensus 325 Lsd~EVe~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~ 404 (1107)
+| |.| .|..+..
T Consensus 150 ------~y--------------------G~l------------------------------------------s~~~~~~ 161 (465)
T TIGR00435 150 ------DY--------------------GKL------------------------------------------SKQDLDQ 161 (465)
T ss_pred ------hh--------------------ccC------------------------------------------CCCCHHH
Confidence 11 211 1100000
Q ss_pred CCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHH
Q 001289 405 PFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEAL 484 (1107)
Q Consensus 405 P~~~~~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L 484 (1107)
-..+.. |+.+. =-++|.||.++|+-
T Consensus 162 ~~~~~~---------~~~~~--------~K~~p~DF~Lwk~~-------------------------------------- 186 (465)
T TIGR00435 162 LEAGAR---------VDVDE--------AKRNKLDFVLWKSS-------------------------------------- 186 (465)
T ss_pred Hhcccc---------cCccc--------ccCCCCCceeeCCC--------------------------------------
Confidence 000000 11110 02566666555321
Q ss_pred HHcCCeeceeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeee
Q 001289 485 KKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCV 564 (1107)
Q Consensus 485 ~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcI 564 (1107)
. .+++ .|
T Consensus 187 -----------------------~-----------------------------~~~~-------------------~w-- 193 (465)
T TIGR00435 187 -----------------------K-----------------------------EGEP-------------------KW-- 193 (465)
T ss_pred -----------------------C-----------------------------CCCC-------------------CC--
Confidence 0 0110 01
Q ss_pred eecCCCcccceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCC
Q 001289 565 SRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWP 644 (1107)
Q Consensus 565 SRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp 644 (1107)
.--||.--|.||++ |. | +-..++|
T Consensus 194 --~spwG~grpgWhie-cs---------------------a------------------------------m~~~~lg-- 217 (465)
T TIGR00435 194 --DSPWGKGRPGWHIE-CS---------------------A------------------------------MNDKYLG-- 217 (465)
T ss_pred --cCCCCCCCCCcHhH-HH---------------------H------------------------------HHHHhcC--
Confidence 12488888999874 20 0 0011123
Q ss_pred CCChhhhhhCCcCcccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCccccccccCchh
Q 001289 645 DDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEG 724 (1107)
Q Consensus 645 ~~~~d~~~~yP~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~ 724 (1107)
.|.|++.+|.|++|.|....++.+.+++|+ ||.++++|+-+++.+|+|||||+||+|+|.|+++
T Consensus 218 ---------~~~Dih~gG~Dl~fpHhene~aqs~a~~g~-~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~------ 281 (465)
T TIGR00435 218 ---------DQIDIHGGGVDLIFPHHENEIAQSEAAFGK-QLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLK------ 281 (465)
T ss_pred ---------CCceeeccccccccchHHHHHHHHHHhcCC-CCCcEEEEeeEEEecCccccccCCCcCCHHHHHH------
Confidence 256899999999999999999999999995 7788888877777999999999999999999998
Q ss_pred HHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001289 725 LHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKL 804 (1107)
Q Consensus 725 l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r~f~nKl~N~~rf~l~~l 804 (1107)
+||+|++|||+++ +...++++|+.+.+.+.++++++|||+++++...+
T Consensus 282 -------------------------------~~~~dalR~~ll~-~~~~~~l~fs~~~l~~a~~~~~rl~~~~~~~~~~~ 329 (465)
T TIGR00435 282 -------------------------------NYDPEILRYFLLS-VHYRSPLDFSEELLEAAKNALERLYKALRVLDTTL 329 (465)
T ss_pred -------------------------------HCCHHHHHHHHHh-CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8999999999997 46788999999999999999999999999875432
Q ss_pred CCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 001289 805 GEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLN-SYEFSDAASTVYSWW 857 (1107)
Q Consensus 805 ~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e-~~~f~~a~~~i~~f~ 857 (1107)
.... .. ... .......+...+.++|+ .+++..|+..|++++
T Consensus 330 ~~~~--~~-----~~~-----~~~~~~~~~~~f~~al~dDlnt~~a~~~l~~~~ 371 (465)
T TIGR00435 330 AYSG--NQ-----SLN-----KFPDEKEFEARFVEAMDDDLNTANALAVLFELA 371 (465)
T ss_pred cccc--cc-----ccc-----cchhHHHHHHHHHHHHhhccCHHHHHHHHHHHH
Confidence 2100 00 000 00112344566777775 599999999999886
No 49
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.3e-34 Score=332.10 Aligned_cols=342 Identities=18% Similarity=0.168 Sum_probs=254.2
Q ss_pred CcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHH
Q 001289 175 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVS 254 (1107)
Q Consensus 175 ~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~ 254 (1107)
-++++|-|.|| |.+||||+++++..|++.||+|++||+|.|+.|+|.||-+|+..++ ++|+++
T Consensus 10 v~~YvCGpTvY--~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~-----~~G~~~---------- 72 (384)
T PRK12418 10 ATMYVCGITPY--DATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAA-----RDGVDW---------- 72 (384)
T ss_pred eEEEecCCCCC--CCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHH-----HcCCCH----------
Confidence 47899999888 9999999999999999999999999999999999999999987775 367775
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC-ccccCCccccCChhhHHHHHHHHHHHHHcCCEEEeee----eeeecCCCCccccccc
Q 001289 255 EVWKWKDEYGGTILRQQRRLGA-SLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLR----LVNWDCVLRTAISDIE 329 (1107)
Q Consensus 255 ~~~~w~~~~~~~i~~ql~~lG~-s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~----~V~W~p~~~TaLsd~E 329 (1107)
+++++.|.+.+.+.|++||+ +.| .+..|++. ...+++++.+|.++|++|.... -|+++...
T Consensus 73 --~e~a~~~~~~f~~d~~~Lni~~~~--~~~raTe~--i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~-------- 138 (384)
T PRK12418 73 --RDLAEREIALFREDMEALRVLPPR--DYVGAVES--IPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDA-------- 138 (384)
T ss_pred --HHHHHHHHHHHHHHHHHhCCCCCC--ccccCCCC--HHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCc--------
Confidence 47889999999999999997 565 56667664 8899999999999999999887 68777652
Q ss_pred ccccccCCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEecCCCCC
Q 001289 330 VDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGR 409 (1107)
Q Consensus 330 Ve~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~P~~~~ 409 (1107)
+|. +|.| .|...
T Consensus 139 -------------~~~------YG~l------------------------------------------s~~~~------- 150 (384)
T PRK12418 139 -------------TPQ------FGYE------------------------------------------SGYDR------- 150 (384)
T ss_pred -------------hhh------cccc------------------------------------------cCCCH-------
Confidence 111 1221 11000
Q ss_pred ccceEecCccccCCC--CCCceec-CC-CCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHH
Q 001289 410 KIPIICDAILVDPKF--GTGAVKI-TP-AHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALK 485 (1107)
Q Consensus 410 ~iPIi~d~~~Vd~~~--GTG~V~~-tP-aHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~ 485 (1107)
-++.- |...|.. .+ -.+|.||.++|.-.
T Consensus 151 ----------~~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~-------------------------------------- 182 (384)
T PRK12418 151 ----------ATMLELFAERGGDPDRPGKRDPLDALLWRAAR-------------------------------------- 182 (384)
T ss_pred ----------HHHHhhhcccccCcccccCCCcccceeeccCC--------------------------------------
Confidence 00000 0000000 01 35666665554210
Q ss_pred HcCCeeceeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeee
Q 001289 486 KKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVS 565 (1107)
Q Consensus 486 ~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcIS 565 (1107)
.+++. |
T Consensus 183 ----------------------------------------------------~~~~~-------------------w--- 188 (384)
T PRK12418 183 ----------------------------------------------------PGEPS-------------------W--- 188 (384)
T ss_pred ----------------------------------------------------CCCCc-------------------c---
Confidence 01111 1
Q ss_pred ecCCCcccceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCC
Q 001289 566 RQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPD 645 (1107)
Q Consensus 566 RQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~ 645 (1107)
.--||---|.||++ | +.+-..++|
T Consensus 189 -~spwG~GRPGWHiE-C---------------------------------------------------sam~~~~lg--- 212 (384)
T PRK12418 189 -PSPFGPGRPGWHIE-C---------------------------------------------------SAIALNRLG--- 212 (384)
T ss_pred -cCCCCCCCChhHHH-H---------------------------------------------------HHHHHHHcC---
Confidence 22588888999864 2 001112223
Q ss_pred CChhhhhhCCcCcccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCccccccccCchhH
Q 001289 646 DTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGL 725 (1107)
Q Consensus 646 ~~~d~~~~yP~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l 725 (1107)
-|.|++.+|.|++|.|...+++.+..++|+.||.++++||.+++.+|+|||||+||+|+|.++++
T Consensus 213 --------~~~DIH~GG~DL~FPHHeneiaq~~a~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~------- 277 (384)
T PRK12418 213 --------SGFDIQGGGSDLIFPHHEFSAAHAEAATGERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRA------- 277 (384)
T ss_pred --------CCcccccCccccccchhHhHHHHHHHhcCCCCcceEEEECCEECCCCCcccCcCCCcCCHHHHHh-------
Confidence 25689999999999999999999999999999999999999999999999999999999999863
Q ss_pred HHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCch--HHHHHHHhccCccccccccHHHHHHHHHHHHHHHHHHHHHhhh
Q 001289 726 HKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTD--ALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSK 803 (1107)
Q Consensus 726 ~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaD--aLRf~L~~~~~~~~Dinf~~~~v~~~r~f~nKl~N~~rf~l~~ 803 (1107)
+|.| ++|||++ .+....+++|+.+.+.+.++.+++++|++...
T Consensus 278 -------------------------------~G~d~~~lR~~ll-s~~yr~~l~fs~e~l~~a~~~l~r~~~~~~~~--- 322 (384)
T PRK12418 278 -------------------------------AGVDPAAIRLALL-AGHYRADREWTDAVLAEAEARLARWRAAAALP--- 322 (384)
T ss_pred -------------------------------ccCChhheeEEEe-ccCCCCCcccCHHHHHHHHHHHHHHHHHHhcc---
Confidence 5555 9999988 67888999999999999999999999876321
Q ss_pred hCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHhHhHHHHH
Q 001289 804 LGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNS-YEFSDAASTVYSWWQYQFCDVFIE 867 (1107)
Q Consensus 804 l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~-~~f~~a~~~i~~f~~~~l~d~Yie 867 (1107)
.. . .+..+...+.++|++ +++..|+..|++++ ...|.|+.
T Consensus 323 -~~-----------~----------~~~~~~~~f~~al~dDlnt~~a~~~l~~~~--~~~n~~~~ 363 (384)
T PRK12418 323 -AG-----------P----------DAADVVARVRAALADDLDTPGALAAVDGWA--TDALEGGG 363 (384)
T ss_pred -cc-----------c----------hHHHHHHHHHHHHHhcCChHHHHHHHHHHH--HHHHhccC
Confidence 00 0 123445678888855 99999999999986 44666643
No 50
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=100.00 E-value=1.5e-34 Score=332.69 Aligned_cols=336 Identities=18% Similarity=0.153 Sum_probs=248.4
Q ss_pred CCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHH
Q 001289 174 KPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFV 253 (1107)
Q Consensus 174 k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~ 253 (1107)
+-++++|-|.|| +.+||||+++++..|+++||+|++||+|.|+.|+|+||-+|+..++ ++|+++
T Consensus 36 ~v~~YvCGpTvY--~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~-----~~g~t~--------- 99 (411)
T TIGR03447 36 EAGMYVCGITPY--DATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAE-----RDGVDW--------- 99 (411)
T ss_pred cceEEEeCCccC--CCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHH-----HcCCCH---------
Confidence 457999999999 8999999999999999999999999999999999999999977775 357765
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCc-cccCCccccCChhhHHHHHHHHHHHHHcCCEEEeee----eeeecCCCCcccccc
Q 001289 254 SEVWKWKDEYGGTILRQQRRLGAS-LDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLR----LVNWDCVLRTAISDI 328 (1107)
Q Consensus 254 ~~~~~w~~~~~~~i~~ql~~lG~s-~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~----~V~W~p~~~TaLsd~ 328 (1107)
+++++.|...+.+.+++||+. .| .+..|++. ...++++|.+|.++|+||...- -|+++...
T Consensus 100 ---~ela~~y~~~f~~d~~~Lni~~~d--~~~RaTe~--i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~------- 165 (411)
T TIGR03447 100 ---RELGTSQIDLFREDMEALRVLPPR--DYIGAVES--IDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEA------- 165 (411)
T ss_pred ---HHHHHHHHHHHHHHHHHcCCCCCC--cccCCCCC--HHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccc-------
Confidence 477899999999999999986 55 45556655 7899999999999999998764 57776641
Q ss_pred cccccccCCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEecCCCC
Q 001289 329 EVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNG 408 (1107)
Q Consensus 329 EVe~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~P~~~ 408 (1107)
+|. +|.| .|....
T Consensus 166 --------------~~~------YG~L------------------------------------------s~~~~~----- 178 (411)
T TIGR03447 166 --------------TEQ------FGYE------------------------------------------SGYDRA----- 178 (411)
T ss_pred --------------hhc------cccc------------------------------------------cCCCHH-----
Confidence 111 1221 111000
Q ss_pred CccceEecCccccCCCCCCc--eec-CC-CCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHH
Q 001289 409 RKIPIICDAILVDPKFGTGA--VKI-TP-AHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEAL 484 (1107)
Q Consensus 409 ~~iPIi~d~~~Vd~~~GTG~--V~~-tP-aHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L 484 (1107)
++.-|.|. |-. .+ -++|.||.++|+-+.
T Consensus 179 ------------~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~~------------------------------------ 210 (411)
T TIGR03447 179 ------------TMLELFAERGGDPDRPGKRDPLDALLWRAARE------------------------------------ 210 (411)
T ss_pred ------------HHHhhhcccccCcccccCCCCcccceeCCCCC------------------------------------
Confidence 00000000 000 11 356777777653210
Q ss_pred HHcCCeeceeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeee
Q 001289 485 KKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCV 564 (1107)
Q Consensus 485 ~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcI 564 (1107)
+++. |
T Consensus 211 ------------------------------------------------------~e~~-------------------w-- 215 (411)
T TIGR03447 211 ------------------------------------------------------GEPS-------------------W-- 215 (411)
T ss_pred ------------------------------------------------------CCCC-------------------c--
Confidence 1110 1
Q ss_pred eecCCCcccceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCC
Q 001289 565 SRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWP 644 (1107)
Q Consensus 565 SRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp 644 (1107)
.--||.--|.||++ |. | +-...+|
T Consensus 216 --~spwG~GRPGWHiE-Cs---------------------a------------------------------m~~~~lg-- 239 (411)
T TIGR03447 216 --DSPFGPGRPGWHIE-CS---------------------A------------------------------IATNRLG-- 239 (411)
T ss_pred --cCCCCCCCChhHHH-HH---------------------H------------------------------HHHHHcC--
Confidence 22588888999864 20 0 0011122
Q ss_pred CCChhhhhhCCcCcccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCccccccccCchh
Q 001289 645 DDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEG 724 (1107)
Q Consensus 645 ~~~~d~~~~yP~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~ 724 (1107)
-+.|++.+|.|++|.|...+++.+.+++|+.||.++++|+..++.+|+|||||+||+|+|.++++
T Consensus 240 ---------~~~Dih~GG~DLifpHheneiaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~------ 304 (411)
T TIGR03447 240 ---------AGFDIQGGGSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRA------ 304 (411)
T ss_pred ---------CceecccCcccccccchHhHHHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCCCCCHHHHHh------
Confidence 13488999999999999999999999999999999999999999999999999999999999976
Q ss_pred HHHHhhcCCCChHHHHHHHhccCCCCCCCCCC-CCchHHHHHHHhccCccccccccHHHHHHHHHHHHHHHHHHHHHhhh
Q 001289 725 LHKRLEEGNLDPKELEVAKKGQKADFPNGIPE-CGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSK 803 (1107)
Q Consensus 725 l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~-~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r~f~nKl~N~~rf~l~~ 803 (1107)
. +++|++|||++ .+....+++|+.+.+.+.++.++++++++...
T Consensus 305 -------------------------------~g~dp~~lRl~ll-s~~Yr~pl~fs~e~l~~a~~~l~rl~~~~~~~--- 349 (411)
T TIGR03447 305 -------------------------------AGVDPAAIRLGLL-AGHYRQDRDWTDAVLAEAEARLARWRAALAAT--- 349 (411)
T ss_pred -------------------------------cCCCcccEEEEEe-cCCCCCCCccCHHHHHHHHHHHHHHHHHHhhc---
Confidence 3 78889999998 57788899999999999999999998877421
Q ss_pred hCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 001289 804 LGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLN-SYEFSDAASTVYSWW 857 (1107)
Q Consensus 804 l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e-~~~f~~a~~~i~~f~ 857 (1107)
.. . .+..+...+.++|+ .+++..|+..|++++
T Consensus 350 -~~-----------~----------~~~~~~~~~~~al~dDln~p~a~~~l~~~~ 382 (411)
T TIGR03447 350 -DA-----------P----------DATDLIARLRQHLANDLDTPAALAAVDNWA 382 (411)
T ss_pred -cc-----------c----------hHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 10 0 12234456667775 599999999998875
No 51
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.2e-31 Score=315.84 Aligned_cols=355 Identities=17% Similarity=0.197 Sum_probs=252.8
Q ss_pred CCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeecc----------CCCccChhHHHHHHHHHHHHhCCCccccChHHH
Q 001289 183 PPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVP----------GMDHAGIATQVVVEKKLMRERKLTRHDIGREQF 252 (1107)
Q Consensus 183 PPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~----------G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f 252 (1107)
=|+|++.+|||||++++..|++.||.|++||+|.|+. |.|+||-.|...++ ++|+++
T Consensus 30 GpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~-----~~g~~~-------- 96 (490)
T PRK14536 30 GPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQ-----EHGKSV-------- 96 (490)
T ss_pred CCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHH-----HcCCCH--------
Confidence 4789999999999999999999999999999999996 99999999866553 467775
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCcccccccccc
Q 001289 253 VSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDY 332 (1107)
Q Consensus 253 ~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~ 332 (1107)
+++++.|...+.+.+++||+..+ .++|..+.|...++++|.+|.++|++|....-|+||+..
T Consensus 97 ----~e~a~~~~~~f~~d~~~Lni~~~---~~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~----------- 158 (490)
T PRK14536 97 ----LEIAAHYTAAFFRDTARLNIERP---SIVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRT----------- 158 (490)
T ss_pred ----HHHHHHHHHHHHHHHHHcCCCCC---ceecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCc-----------
Confidence 47789999999999999999987 344667999999999999999999999999999999851
Q ss_pred cccCCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEecCCCCCccc
Q 001289 333 VDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIP 412 (1107)
Q Consensus 333 ~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~P~~~~~iP 412 (1107)
+|.| | .|.|...
T Consensus 159 ----------~~~Y------G------------------------------------------~Ls~~~~---------- 170 (490)
T PRK14536 159 ----------FPSY------G------------------------------------------SLASAAV---------- 170 (490)
T ss_pred ----------ccch------h------------------------------------------hhcCCCH----------
Confidence 1111 2 1211100
Q ss_pred eEecCccccCCCCCCceecCC-CCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCee
Q 001289 413 IICDAILVDPKFGTGAVKITP-AHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYR 491 (1107)
Q Consensus 413 Ii~d~~~Vd~~~GTG~V~~tP-aHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~ 491 (1107)
-++.-|.. |-..+ -++|.||.+++...
T Consensus 171 -------~~l~~g~~-v~~~~~K~np~DFaLWK~~~-------------------------------------------- 198 (490)
T PRK14536 171 -------EDLQAGAR-IEHDTNKRNPHDFVLWFTRS-------------------------------------------- 198 (490)
T ss_pred -------HHhhcCCc-CCCCCCCCCchhchhccccc--------------------------------------------
Confidence 00000100 00111 34566666654210
Q ss_pred ceeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeecCCCc
Q 001289 492 GAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWG 571 (1107)
Q Consensus 492 ~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG 571 (1107)
...+.++++.--||
T Consensus 199 ------------------------------------------------------------------~~~~~~~~W~SpWG 212 (490)
T PRK14536 199 ------------------------------------------------------------------KFENHALTWDSPWG 212 (490)
T ss_pred ------------------------------------------------------------------CCCCCCCcccCCCC
Confidence 00111223355799
Q ss_pred ccceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCCChhhh
Q 001289 572 HQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLK 651 (1107)
Q Consensus 572 ~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~~~~d~~ 651 (1107)
...|.||++ |- | +-...+|
T Consensus 213 ~GRPGWHIE-Cs---------------------a------------------------------Ms~~~lg--------- 231 (490)
T PRK14536 213 RGYPGWHIE-CS---------------------A------------------------------MSMKYLG--------- 231 (490)
T ss_pred CCCCChHHH-HH---------------------H------------------------------HHHHHcC---------
Confidence 999999864 20 0 0011122
Q ss_pred hhCCcCcccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCccccccccCchhHHHHhhc
Q 001289 652 AFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEE 731 (1107)
Q Consensus 652 ~~yP~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~ 731 (1107)
-..|++.+|.|++|+|.-..++.+.+++|+ ||-++++|+..+..+|+|||||+||+|++.|+++
T Consensus 232 --~~~DIH~GG~DliFPHHeneiAqs~a~~g~-~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~------------- 295 (490)
T PRK14536 232 --EQCDIHIGGVDHIRVHHTNEIAQCEAATGK-PWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQE------------- 295 (490)
T ss_pred --CceeEEeccccCCCcchhhHHHHHHHhcCC-CcceEEEEcCEEeecCccccccCCCcccHHHHHh-------------
Confidence 024899999999999999999999888886 9999999999998999999999999999999998
Q ss_pred CCCChHHHHHHHhccCCCCCCCCCC-CCchHHHHHHHhccCccccccccHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCC
Q 001289 732 GNLDPKELEVAKKGQKADFPNGIPE-CGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVP 810 (1107)
Q Consensus 732 ~nl~~~e~~~a~~~~~~~fp~gi~~-~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r~f~nKl~N~~rf~l~~l~~~~~p 810 (1107)
+ |+++++||++++ +....+++|+.+.+...++-+++|.|++.-+....... .+
T Consensus 296 ------------------------~g~~~~alR~~lls-~~yr~~l~Fs~e~l~~a~~~~~rl~~~~~~~~~~~~~~-~~ 349 (490)
T PRK14536 296 ------------------------KGFQPLDYRFFLLG-GHYRSQLAFSWEALKTAKAARRSLVRRVARVVDAARAT-TG 349 (490)
T ss_pred ------------------------cCCCHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cc
Confidence 5 999999999987 77788999999999998888888888765543222110 00
Q ss_pred CCCCCC-CCCC-hhhHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 001289 811 PLKLHP-HNLP-FSCKWILSVLNKAISRTASSLN-SYEFSDAASTVYSWW 857 (1107)
Q Consensus 811 ~~~~~~-~~~~-~~D~wil~~L~~~~~~v~~a~e-~~~f~~a~~~i~~f~ 857 (1107)
...... .... ..+.-....+..+...+.++|+ .+++..|+..|++++
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~Al~~l~~~~ 399 (490)
T PRK14536 350 SVRGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKALSELQKLV 399 (490)
T ss_pred cccccccccccccccchhhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 000000 0000 0000011234556678888885 499999999999886
No 52
>PLN02946 cysteine-tRNA ligase
Probab=99.97 E-value=6.2e-31 Score=312.52 Aligned_cols=360 Identities=18% Similarity=0.194 Sum_probs=259.1
Q ss_pred CcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHH
Q 001289 175 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVS 254 (1107)
Q Consensus 175 ~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~ 254 (1107)
-..|+|- |+|.|.+|||||++++..|++.||.|+.||+|.|+.|+|.+|-+|...++ ++|+++
T Consensus 81 v~~Y~CG--pTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~-----~~g~~~---------- 143 (557)
T PLN02946 81 VGMYVCG--VTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARAN-----ELGEDP---------- 143 (557)
T ss_pred eeEEEeC--CccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHH-----HcCCCH----------
Confidence 3556553 78899999999999999999999999999999999999999999977664 357764
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCcccccccccccc
Q 001289 255 EVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVD 334 (1107)
Q Consensus 255 ~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~e 334 (1107)
+++++.|.+.+.+.|++||+. + ..+.|...+|...+++++.+|.++|++|.+..-|+||+..
T Consensus 144 --~ela~~y~~~f~~d~~~LnI~-~--p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~------------- 205 (557)
T PLN02946 144 --ISLSRRYCEEFLSDMAYLHCL-P--PSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDK------------- 205 (557)
T ss_pred --HHHHHHHHHHHHHHHHHCCCC-C--CCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCc-------------
Confidence 478899999999999999988 3 4667888899999999999999999999999999999761
Q ss_pred cCCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEecCCCCCccceE
Q 001289 335 IPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPII 414 (1107)
Q Consensus 335 ~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~P~~~~~iPIi 414 (1107)
+|. ||. |.|..+.
T Consensus 206 --------f~~------YG~------------------------------------------Ls~~~l~----------- 218 (557)
T PLN02946 206 --------FPE------YGK------------------------------------------LSGRKLE----------- 218 (557)
T ss_pred --------chh------hhh------------------------------------------cCCCChh-----------
Confidence 111 122 2221110
Q ss_pred ecCccccCCCCCCceecCC-CCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCeece
Q 001289 415 CDAILVDPKFGTGAVKITP-AHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGA 493 (1107)
Q Consensus 415 ~d~~~Vd~~~GTG~V~~tP-aHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~ 493 (1107)
++.-|.. |...+ -.+|.||.++|+.+ .
T Consensus 219 ------~l~~g~r-v~~~~~K~np~DFaLWK~~k----------------~----------------------------- 246 (557)
T PLN02946 219 ------DNRAGER-VAVDSRKKNPADFALWKAAK----------------E----------------------------- 246 (557)
T ss_pred ------HhhcCCC-CCcccccCCccccceeccCC----------------C-----------------------------
Confidence 0011111 11111 45777887775421 0
Q ss_pred eccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeecCCCccc
Q 001289 494 KDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQ 573 (1107)
Q Consensus 494 ~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~p 573 (1107)
|++. | .--||.-
T Consensus 247 ---------------------------------------------ge~~-------------------W----~SPWG~G 258 (557)
T PLN02946 247 ---------------------------------------------GEPF-------------------W----DSPWGPG 258 (557)
T ss_pred ---------------------------------------------CCCC-------------------c----cCCCCCC
Confidence 1110 1 1258888
Q ss_pred ceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCCChhhhhh
Q 001289 574 IPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAF 653 (1107)
Q Consensus 574 IP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~~~~d~~~~ 653 (1107)
-|.||++ | +.+-..++|
T Consensus 259 RPGWHIE-C---------------------------------------------------SaMs~~~lG----------- 275 (557)
T PLN02946 259 RPGWHIE-C---------------------------------------------------SAMSAAYLG----------- 275 (557)
T ss_pred CCcHHHH-H---------------------------------------------------HHHHHHHcC-----------
Confidence 8999874 2 001111223
Q ss_pred CCcCcccccccccchHHHHHHHHHHHhcCCCCccEEEEc-ceeeCCCCccccccCCCccCccccccccCchhHHHHhhcC
Q 001289 654 YPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLH-PMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEG 732 (1107)
Q Consensus 654 yP~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~H-g~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~ 732 (1107)
.+.|++.+|.|.+|-+.-.-++.+.+.+|. ||-+.++| |||. .+|+|||||+||+|++.|+++
T Consensus 276 ~~~DIH~GG~DL~FPHHENEiAQsea~~g~-~~a~yW~H~G~v~-~~G~KMSKSlGN~itl~dll~-------------- 339 (557)
T PLN02946 276 HSFDIHGGGMDLVFPHHENEIAQSCAACCD-SNISYWIHNGFVT-VDSEKMSKSLGNFFTIRQVID-------------- 339 (557)
T ss_pred CCeeEeccccccCCCcccchHHHHHHHhCC-CCCceeeEeeEEE-eCCCCcCCcCCCcCCHHHHHH--------------
Confidence 245899999999999988888888887776 55555555 8887 899999999999999999998
Q ss_pred CCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCC
Q 001289 733 NLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPL 812 (1107)
Q Consensus 733 nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r~f~nKl~N~~rf~l~~l~~~~~p~~ 812 (1107)
+||+|++||||++ +...++++|+.+.+....+-+.++++++..+...+........
T Consensus 340 -----------------------~y~~dalR~~lLs-~hyr~~l~fs~e~L~~a~~~l~~l~~~~~~~~~~l~~~~~~~~ 395 (557)
T PLN02946 340 -----------------------LYHPLALRLFLLG-THYRSPINYSDVQLESASERIFYIYQTLHDCEESLQQHDSTFE 395 (557)
T ss_pred -----------------------hcCccceeeeeec-cCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 8999999999997 5678899999999998888778888887765433321110000
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHhHhHHHHH
Q 001289 813 KLHPHNLPFSCKWILSVLNKAISRTASSLNS-YEFSDAASTVYSWWQYQFCDVFIE 867 (1107)
Q Consensus 813 ~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~-~~f~~a~~~i~~f~~~~l~d~Yie 867 (1107)
..+ .+.-+...+..+...+.++|++ +++..|+..|++++ ...|.++.
T Consensus 396 -----~~~-~~~~~~~~~~~~~~~f~~Al~DDlntp~Al~~l~~~v--k~~N~~~~ 443 (557)
T PLN02946 396 -----KDS-VPPDTLNCINKFHDEFVTSMSDDLHTPVALAALSEPL--KTINDLLH 443 (557)
T ss_pred -----ccc-cchhhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH--HHHHHHhh
Confidence 000 1111233455667788888854 99999999999997 44666664
No 53
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.97 E-value=1.6e-30 Score=309.79 Aligned_cols=334 Identities=20% Similarity=0.299 Sum_probs=246.6
Q ss_pred CCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHH
Q 001289 183 PPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDE 262 (1107)
Q Consensus 183 PPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~ 262 (1107)
=|+|-+.+|||||++++..|++.||.|++||+|.|+.|+|++|-+|...++ +.|+++ +++++.
T Consensus 255 GPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~-----e~G~sp------------~ela~~ 317 (699)
T PRK14535 255 GMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAA-----ENGETI------------GELTAR 317 (699)
T ss_pred CCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHH-----HcCCCH------------HHHHHH
Confidence 377889999999999999999999999999999999999999999877664 357765 477899
Q ss_pred HHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEeee-eeeecCCCCcccccccccccccCCccee
Q 001289 263 YGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLR-LVNWDCVLRTAISDIEVDYVDIPKREMR 341 (1107)
Q Consensus 263 ~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~-~V~W~p~~~TaLsd~EVe~~e~~~~t~~ 341 (1107)
|...+.+.+++||++.| .++|....|...+..++.+|.++|++|.+.. -|+||+.+-
T Consensus 318 y~~~F~~d~~~LnI~~p---~~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f------------------- 375 (699)
T PRK14535 318 FIQAMHEDADALGVLRP---DIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREF------------------- 375 (699)
T ss_pred HHHHHHHHHHHcCCCCC---cEeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEecccc-------------------
Confidence 99999999999999988 3567778999999999999999999998743 688887621
Q ss_pred eecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEecCCCCCccceEecCcccc
Q 001289 342 NVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVD 421 (1107)
Q Consensus 342 ~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~P~~~~~iPIi~d~~~Vd 421 (1107)
| .|..|.|.... +
T Consensus 376 --~------------------------------------------------~YG~LS~~~~~-----------------~ 388 (699)
T PRK14535 376 --A------------------------------------------------AYGQLSGKSLD-----------------D 388 (699)
T ss_pred --c------------------------------------------------ccccccCCChH-----------------H
Confidence 1 11112111100 0
Q ss_pred CCCCCCceecCC-CCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCeeceecccccc
Q 001289 422 PKFGTGAVKITP-AHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRL 500 (1107)
Q Consensus 422 ~~~GTG~V~~tP-aHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~~~~~~~ 500 (1107)
+.-|.. |...+ -++|.||.++|+.. .|
T Consensus 389 l~~g~r-ve~d~~Krnp~DFaLWK~sk----------------~G----------------------------------- 416 (699)
T PRK14535 389 LRAGER-VEVDGFKRDPLDFVLWKAAK----------------AG----------------------------------- 416 (699)
T ss_pred hcCCCc-cccccccCCccccceeccCC----------------CC-----------------------------------
Confidence 000110 00111 46778887775421 01
Q ss_pred ceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeecCCCcccceeEEEc
Q 001289 501 GLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVT 580 (1107)
Q Consensus 501 p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~ 580 (1107)
+.. | .--||---|.||++
T Consensus 417 ---------------------------------------ep~-------------------W----~SPWG~GRPGWHIE 434 (699)
T PRK14535 417 ---------------------------------------EPA-------------------W----ESPWGNGRPGWHIE 434 (699)
T ss_pred ---------------------------------------CCC-------------------c----cCCCCCCCCchHHH
Confidence 100 1 12578878999864
Q ss_pred cCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCCChhhhhhCCcCccc
Q 001289 581 LEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLE 660 (1107)
Q Consensus 581 ~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~~~~d~~~~yP~dl~~ 660 (1107)
| +.+-..++| -+.|++.
T Consensus 435 -C---------------------------------------------------SAMs~~~LG-----------~~~DIHg 451 (699)
T PRK14535 435 -C---------------------------------------------------SAMSENLFG-----------DTFDIHG 451 (699)
T ss_pred -H---------------------------------------------------HHHHHHHcC-----------CcceeEC
Confidence 2 001111223 1348999
Q ss_pred ccccccchHHHHHHHHHHHhcCCC---------------CccEEEEc-ceeeCCCCccccccCCCccCccccccccCchh
Q 001289 661 TGHDILFFWVARMVMLGIKLGGEV---------------PFTKVYLH-PMIRDAHGRKMSKSLGNVIDPLEVINGISLEG 724 (1107)
Q Consensus 661 tG~Dil~fW~armi~~~~~l~g~~---------------PFk~V~~H-g~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~ 724 (1107)
+|.|.+|-+.-.-++.+.+.+|+. ||-+.++| |||. .+|+|||||+||+|+|.++++
T Consensus 452 GG~DLiFPHHENEiAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~-vdGeKMSKSLGN~it~~dlLe------ 524 (699)
T PRK14535 452 GGADLQFPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIR-VDGEKMSKSLGNFFTIREVLK------ 524 (699)
T ss_pred CccccCCCCCccHHHHHHHhhCCCcccccccccccccccccccEEEECCeEe-eCCCccCCCCCCcCCHHHHHH------
Confidence 999999999999999888887762 58888887 6666 899999999999999999998
Q ss_pred HHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001289 725 LHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKL 804 (1107)
Q Consensus 725 l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r~f~nKl~N~~rf~l~~l 804 (1107)
+||+|++|||+++ +...++++|+.+.+++.++.++++|++++-+.
T Consensus 525 -------------------------------~ygpdalRl~lLs-shYRspL~fS~e~Le~Ak~~l~Rl~~~l~~~~--- 569 (699)
T PRK14535 525 -------------------------------QYDPEVVRFFILR-AHYRSPLNYSDAHLDDAKGALTRLYTTLKNTP--- 569 (699)
T ss_pred -------------------------------hCCHHHHHHHHHc-CCCCCCCCcCHHHHHHHHHHHHHHHHHHHhhh---
Confidence 8999999999997 67888999999999999999999998875331
Q ss_pred CCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHH
Q 001289 805 GEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNS-YEFSDAASTVYSWW 857 (1107)
Q Consensus 805 ~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~-~~f~~a~~~i~~f~ 857 (1107)
. ..+ . ....+..+...+.++|++ +++..|+..|++++
T Consensus 570 -~-~~~--------~------~~~~l~~~~~~f~~AL~DDlntp~Ala~L~~lv 607 (699)
T PRK14535 570 -A-AEF--------M------LSENVNDYTRRFYAAMNDDFGTVEAVAVLFELA 607 (699)
T ss_pred -h-ccc--------h------hhhhHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 0 000 0 112344566778888854 99999999998886
No 54
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.97 E-value=3.8e-30 Score=275.48 Aligned_cols=94 Identities=20% Similarity=0.246 Sum_probs=82.0
Q ss_pred cccCCCCCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCcc
Q 001289 166 FIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRH 245 (1107)
Q Consensus 166 f~~~~~~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~ 245 (1107)
|+|.. .++.+|+++.|.|| |.+||||++++++.|+++||+||+|++|+|+.|+|.||.+|+..+++ +|++
T Consensus 13 ~~p~~-~~~~~~y~~gpt~y--~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~-----~g~~-- 82 (213)
T cd00672 13 FVPLN-PGLVTMYVCGPTVY--DYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRARE-----EGLS-- 82 (213)
T ss_pred eecCC-CCCceEEEeCCccC--CCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHH-----cCCC--
Confidence 44443 35568999998888 78999999999999999999999999999999999999999888864 4665
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-c
Q 001289 246 DIGREQFVSEVWKWKDEYGGTILRQQRRLGASL-D 279 (1107)
Q Consensus 246 d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~-D 279 (1107)
+++|++.+.+.+++++++||++. |
T Consensus 83 ----------p~e~~~~~~~~f~~~~~~l~i~~~d 107 (213)
T cd00672 83 ----------WKEVADYYTKEFFEDMKALNVLPPD 107 (213)
T ss_pred ----------HHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 45889999999999999999888 5
No 55
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.96 E-value=1.7e-28 Score=295.55 Aligned_cols=119 Identities=24% Similarity=0.253 Sum_probs=102.4
Q ss_pred CCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHH
Q 001289 173 SKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQF 252 (1107)
Q Consensus 173 ~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f 252 (1107)
.+++++|..+.|||||.|||||+++.++.|+++|+.|+.||+|.++.|+|++|.++...++...
T Consensus 109 ~~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~---------------- 172 (507)
T PRK01611 109 KGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLE---------------- 172 (507)
T ss_pred CCCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHH----------------
Confidence 3458999999999999999999999999999999999999999999999999999877665421
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEE
Q 001289 253 VSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYR 310 (1107)
Q Consensus 253 ~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr 310 (1107)
...+++++.+.+.++++|++||+++| ....+.+..+...+.+++.+|.++|++|+
T Consensus 173 -~~~~~~~~~~~~~~~~~l~~LgI~~D--~~~~es~~~~~~~~~~~~~~L~~~G~~y~ 227 (507)
T PRK01611 173 -LLWRKAVDISLDEIKEDLDRLGVHFD--VWFSESELYYNGKVDEVVEDLKEKGLLYV 227 (507)
T ss_pred -HHHHHHHHHHHHHHHHHHHHcCCeee--EEeecCcchhcchHHHHHHHHHHCCCEEE
Confidence 02357789999999999999999998 33345555667789999999999999993
No 56
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.96 E-value=1e-28 Score=289.72 Aligned_cols=354 Identities=16% Similarity=0.180 Sum_probs=247.5
Q ss_pred EECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeee---------ccCC-CccChhHHHHHHHHHHHHhCCCccccC
Q 001289 179 IVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALW---------VPGM-DHAGIATQVVVEKKLMRERKLTRHDIG 248 (1107)
Q Consensus 179 i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~---------~~G~-D~~Gi~~q~~vEk~l~~~~g~~~~d~~ 248 (1107)
|..-=|+|-..+||||+++++..|++.||.|++||+|.| +.|+ ||||-+|...++ ++|+++
T Consensus 24 mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~-----~~g~~~---- 94 (481)
T PRK14534 24 VYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAAR-----ERGLTV---- 94 (481)
T ss_pred EEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHH-----HcCCCH----
Confidence 333447888999999999999999999999999999999 7898 777778866554 467765
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCcccccc
Q 001289 249 REQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDI 328 (1107)
Q Consensus 249 re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~ 328 (1107)
+++++.|...+.+.+++||++.| ..+.| .++|...+++++.+|.++|++|.....|+||+.+-
T Consensus 95 --------~e~a~~~~~~f~~d~~~Lni~~~--~~~p~-atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~~------ 157 (481)
T PRK14534 95 --------YEISRFFTEAFFDDCKKLNIVYP--DKVLV-ASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSCF------ 157 (481)
T ss_pred --------HHHHHHHHHHHHHHHHHcCCCCC--ceecC-ccchHHHHHHHHHHHHHCCCEEEECCeEEEecccc------
Confidence 47789999999999999999988 33334 57999999999999999999999999999998731
Q ss_pred cccccccCCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEecCCCC
Q 001289 329 EVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNG 408 (1107)
Q Consensus 329 EVe~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~P~~~ 408 (1107)
|+ |..|.|...
T Consensus 158 ---------------~~------------------------------------------------YG~ls~~~l------ 168 (481)
T PRK14534 158 ---------------KS------------------------------------------------YGQMAGINL------ 168 (481)
T ss_pred ---------------cc------------------------------------------------hhhhcCCCH------
Confidence 11 112222110
Q ss_pred CccceEecCccccCC--CCCCceecCC-CCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHH
Q 001289 409 RKIPIICDAILVDPK--FGTGAVKITP-AHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALK 485 (1107)
Q Consensus 409 ~~iPIi~d~~~Vd~~--~GTG~V~~tP-aHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~ 485 (1107)
-++. .|++ |...+ -++|.||.+++..
T Consensus 169 -----------~~l~~~~~~~-v~~~~~K~np~DFaLWK~~--------------------------------------- 197 (481)
T PRK14534 169 -----------NDFKDMSVSR-VEIDKSKRNKSDFVLWFTN--------------------------------------- 197 (481)
T ss_pred -----------HHHhhhccCc-CCcccCCCCcccchhcCcC---------------------------------------
Confidence 0011 1111 00111 3445555444310
Q ss_pred HcCCeeceeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeee
Q 001289 486 KKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVS 565 (1107)
Q Consensus 486 ~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcIS 565 (1107)
+.+++.+++
T Consensus 198 -----------------------------------------------------------------------~~~~~~~~~ 206 (481)
T PRK14534 198 -----------------------------------------------------------------------SKFKDQEMK 206 (481)
T ss_pred -----------------------------------------------------------------------CcCCCCCCe
Confidence 012333455
Q ss_pred ecCCCcccceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCC
Q 001289 566 RQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPD 645 (1107)
Q Consensus 566 RQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~ 645 (1107)
+..-||.--|.||++ | .| +-...+|
T Consensus 207 w~spWG~GrPgWHiE-C---------------------sa------------------------------m~~~~lg--- 231 (481)
T PRK14534 207 WDSPWGFGYPSWHLE-C---------------------AA------------------------------MNLEYFK--- 231 (481)
T ss_pred ecCCCCCcCCcHHHH-H---------------------HH------------------------------HHHHHcC---
Confidence 667899999999864 1 00 0001111
Q ss_pred CChhhhhhCCcCcccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCccccccccCchhH
Q 001289 646 DTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGL 725 (1107)
Q Consensus 646 ~~~d~~~~yP~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l 725 (1107)
-..|++.+|.|++|++.-..++++.+.+|+ ||-+.++|+-.+..+|+|||||+||+|+..|+++
T Consensus 232 --------~~~DIH~GG~DliFPHHene~Aqs~a~~g~-~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll~------- 295 (481)
T PRK14534 232 --------STLDIHLGGVDHIGVHHINEIAIAECYLNK-KWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLED------- 295 (481)
T ss_pred --------CcceEEecccccCCCcchhHHHHHhhhcCC-CcceEEEEecEEEecCceecccCCCcccHHHHHh-------
Confidence 124899999999999999999998888876 7777887765445899999999999999999997
Q ss_pred HHHhhcCCCChHHHHHHHhccCCCCCCCCCC-CCchHHHHHHHhccCccccccccHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001289 726 HKRLEEGNLDPKELEVAKKGQKADFPNGIPE-CGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKL 804 (1107)
Q Consensus 726 ~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~-~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r~f~nKl~N~~rf~l~~l 804 (1107)
+ ++++++||++++ +....+++|+++.++..++-+++|+++++.+...+
T Consensus 296 ------------------------------~~~~~~alR~~lls-~~yr~~l~Fs~e~l~~a~~~~~~~~~~~~~~~~~~ 344 (481)
T PRK14534 296 ------------------------------QGFSPLDFRYFCLT-AHYRTQLKFTFNNLKACKIARENMLNKLTYFYSSL 344 (481)
T ss_pred ------------------------------cCCChhHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4 889999999876 67778999999999999999999999887553333
Q ss_pred CCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 001289 805 GEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLN-SYEFSDAASTVYSWW 857 (1107)
Q Consensus 805 ~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e-~~~f~~a~~~i~~f~ 857 (1107)
.. ... ........+ .....+..+...+.++|+ .+++..|+..|++++
T Consensus 345 ~~-~~~-~~~~~~~~~----~~~~~~~~~~~~f~~Al~DDlNtp~Al~~l~~~~ 392 (481)
T PRK14534 345 DQ-FDL-NLLNKDLEN----IEFSLEKEYYDSFLEKIAFDLNIPQGLALLWDII 392 (481)
T ss_pred hh-ccc-ccccccccc----chhhhHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 21 000 000000000 000112334467777885 499999999999886
No 57
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.95 E-value=1.1e-26 Score=244.35 Aligned_cols=179 Identities=30% Similarity=0.463 Sum_probs=149.0
Q ss_pred ccHHHHHHHHH-HHHHHHHHHHHHhh--hhCCCCCCCCC-CCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 001289 778 LDIQRVVGYRQ-WCNKLWNAVRFSMS--KLGEGFVPPLK-LHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTV 853 (1107)
Q Consensus 778 f~~~~v~~~r~-f~nKl~N~~rf~l~--~l~~~~~p~~~-~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i 853 (1107)
|+.+.+++.++ |||||||++||+++ ++. ++.|... ......+..|+||++++++++..+.++|++|+|+.|++.+
T Consensus 1 ~s~~~v~~~~~~f~~KlwN~~rf~l~~~~~~-~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~e~~~f~~a~~~l 79 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLD-GFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRAL 79 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 57788999888 99999999999986 443 2444311 1122467899999999999999999999999999999999
Q ss_pred HHHHHHhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCcceecc
Q 001289 854 YSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCE 933 (1107)
Q Consensus 854 ~~f~~~~l~d~Yie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~a~ 933 (1107)
|.|++ .++|+|++.+|+.+++++.. ..+..++.+|+.+++.+++||||||||+|||||++++...+ ++.+||+.++
T Consensus 80 ~~f~~-~~~~~Y~e~~K~~~~~~~~~--~~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~~~~-~~~~si~~~~ 155 (183)
T cd07961 80 LEFID-ELTNWYIRRNRKRFWGEEGD--DDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRRELG-DAPESVHLLD 155 (183)
T ss_pred HHHHH-HhhhhHhhhchHHhcCCCCc--hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcC-CCCCceeeec
Confidence 99996 56699999999988765311 14567888999999999999999999999999999975211 1236899999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHH
Q 001289 934 YPSAVEGWTDERAEFEMDLVESTVRCIR 961 (1107)
Q Consensus 934 ~P~~~~~~~d~~~e~~~e~v~~vi~~iR 961 (1107)
||++++.+.|+.++..++.++++++++|
T Consensus 156 wP~~~~~~~~~~~~~~~~~l~~~i~~~r 183 (183)
T cd07961 156 WPEVDESLIDEELEEAMELVREIVELGR 183 (183)
T ss_pred CCCCcccccCHHHHHHHHHHHHHHHhhC
Confidence 9999888889999999999999999987
No 58
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.94 E-value=1.1e-26 Score=264.37 Aligned_cols=124 Identities=15% Similarity=0.186 Sum_probs=98.8
Q ss_pred CCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCcc--------ChhHHHHHHHHHHHHhCCCcc
Q 001289 174 KPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHA--------GIATQVVVEKKLMRERKLTRH 245 (1107)
Q Consensus 174 k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~--------Gi~~q~~vEk~l~~~~g~~~~ 245 (1107)
+++|+|++|++ |||.+||||++.++..|+++||+||+|++|.+++|+|.| |+|.+ +++. .|+...
T Consensus 18 ~~~~~v~tgi~-psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~--~~~~----~G~pi~ 90 (353)
T cd00674 18 KEKYVVASGIS-PSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPES--YEQY----IGMPLS 90 (353)
T ss_pred CCeEEEecCCC-CCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhH--HHHh----cCccch
Confidence 35799999985 999999999999999999999999999999999999999 56643 4443 466655
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCCh-hhHHHHHHHHHHHHHcCCEE
Q 001289 246 DIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDE-KRSKAVTEAFVRLYKEGLIY 309 (1107)
Q Consensus 246 d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~-~~~~~v~~~F~~L~~~GlIy 309 (1107)
.+..+. ..|.+|++.+...+.+.|++||+++|+ +.|++. ..-.....++..|.+.+.|.
T Consensus 91 ~ip~p~--g~~~~~~d~~~~~f~~~l~~lgi~~d~---~~~T~~y~~g~~~~~i~~~L~~~~~I~ 150 (353)
T cd00674 91 SVPDPF--GCCESYAEHFERPFEESLEKLGIEVEF---ISQSQMYKSGLYDENILIALEKRDEIM 150 (353)
T ss_pred hchhhc--CCCHHHHHHHHHHHHHHHHHcCCeeee---eecCCchhhchHHHHHHHHHHHCChHH
Confidence 444322 335689999999999999999999993 334443 34477888888998888874
No 59
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.93 E-value=1.5e-24 Score=227.44 Aligned_cols=176 Identities=26% Similarity=0.439 Sum_probs=147.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCC-CCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001289 778 LDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKL-HPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSW 856 (1107)
Q Consensus 778 f~~~~v~~~r~f~nKl~N~~rf~l~~l~~~~~p~~~~-~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f 856 (1107)
++.+.+.+.+++++|+||++||+++.+.+ +.|.... .....+..|+||+++++.+++.+.++|++|+|+.|++.+|+|
T Consensus 1 i~~~~~~~~~~~~~Kl~N~~rf~~~~~~~-~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~e~~~f~~a~~~i~~f 79 (180)
T cd07960 1 ISDEILKQVAEAYRKIRNTFRFLLGNLND-FDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQALNNF 79 (180)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccC-CCcccccCChhhccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 35677899999999999999999987754 5443211 123567899999999999999999999999999999999999
Q ss_pred HHHhHhHHHHHhhcccccCCC--cccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCcceeccC
Q 001289 857 WQYQFCDVFIEAIKPYFAGDN--PAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEY 934 (1107)
Q Consensus 857 ~~~~l~d~Yie~~K~~l~~~~--~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~a~~ 934 (1107)
+++++||+|++.+|||++++. .. .+..+..+|+.+++.+++||||||||+||+||+.|+.. .+..||+.++|
T Consensus 80 ~~~~l~n~Yi~~~k~~~~~~~~~~~---~~~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~~~---~~~~~v~~~~w 153 (180)
T cd07960 80 CTVDLSAFYLDIIKDRLYCDAKDSL---ERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGE---KKEESVFLEDW 153 (180)
T ss_pred HHHHHHHHHHHhcccceecCCCCCH---HHHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhcccc---CCCCCeeccCC
Confidence 998999999999999987532 22 34568889999999999999999999999999999752 11368999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHH
Q 001289 935 PSAVEGWTDERAEFEMDLVESTVRCI 960 (1107)
Q Consensus 935 P~~~~~~~d~~~e~~~e~v~~vi~~i 960 (1107)
|++++.+.|++++..|+.++++-..|
T Consensus 154 P~~~~~~~~~~~~~~~~~~~~i~~~~ 179 (180)
T cd07960 154 PELPEEWKDEELEEKWEKLLALRDEV 179 (180)
T ss_pred CCCcccccCHHHHHHHHHHHHHHHhh
Confidence 99988888999999988888775543
No 60
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=6.5e-24 Score=244.13 Aligned_cols=146 Identities=22% Similarity=0.332 Sum_probs=122.5
Q ss_pred cCcccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCC
Q 001289 656 TSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLD 735 (1107)
Q Consensus 656 ~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~ 735 (1107)
.|++-+|.|++|-+.-.-++.+.+.+|..||-++++|.-.+.-+|+|||||+||+|...|+++
T Consensus 222 ~DIHgGG~DLiFPHHENEiAQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~----------------- 284 (464)
T COG0215 222 FDIHGGGSDLIFPHHENEIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLK----------------- 284 (464)
T ss_pred cceecCcccccCCCcccHHHHHHhhhCCCcceeEeEEcceeeecCcCcccccCCeeEHHHHHh-----------------
Confidence 389999999999999999999999999899999999954445999999999999999999998
Q ss_pred hHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCC
Q 001289 736 PKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLH 815 (1107)
Q Consensus 736 ~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r~f~nKl~N~~rf~l~~l~~~~~p~~~~~ 815 (1107)
+|+..+|||+|++ +....+++|+.+.++.+++.+.+|+|+++.+.....+ ..
T Consensus 285 --------------------~~~p~~lR~~lls-~HYR~pl~fsee~L~~A~~~l~rl~~~~~~~~~~~~~-~~------ 336 (464)
T COG0215 285 --------------------KYDPEVLRLFLLS-SHYRSPLDFSEELLEEAKKALERLYNALRRLRDLAGD-AE------ 336 (464)
T ss_pred --------------------hcCHHHHHHHHHH-HHhCCccccCHHHHHHHHHHHHHHHHHHHHHHhhccc-cc------
Confidence 8999999999987 5667899999999999999999999999876532211 10
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 001289 816 PHNLPFSCKWILSVLNKAISRTASSLN-SYEFSDAASTVYSWW 857 (1107)
Q Consensus 816 ~~~~~~~D~wil~~L~~~~~~v~~a~e-~~~f~~a~~~i~~f~ 857 (1107)
.. .+......+.++|+ .|++..|++.|++++
T Consensus 337 ---~~--------~~~~~~~~f~~al~DDfnt~~al~~l~~l~ 368 (464)
T COG0215 337 ---LA--------DLKEFEARFREALDDDFNTPKALAVLFELA 368 (464)
T ss_pred ---cc--------hhHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 00 34455566777774 599999999999886
No 61
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=99.88 E-value=2.4e-22 Score=204.65 Aligned_cols=150 Identities=33% Similarity=0.560 Sum_probs=121.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 001289 823 CKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLL 902 (1107)
Q Consensus 823 D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL 902 (1107)
|+||+++++.+++.++++|++|+|+.|++.+++|+++++||+|++.+||++++++... .++ ++.+++.++..+++||
T Consensus 1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~--~~~-~~~~l~~~l~~~~~ll 77 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDE--SRE-AQYTLYEILKILLILL 77 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCH--HHH-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchh--HHH-HHHHHHHHHHHHhhcc
Confidence 8999999999999999999999999999999999889999999999999988764431 345 8999999999999999
Q ss_pred hchhhHHHHHHHHhCCCCCCCCCCCcceeccCCCCCCCCCcHHH-HHHHHHHHHHHHHHHHHHHHhhccCCCCcccEEE
Q 001289 903 HPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWTDERA-EFEMDLVESTVRCIRSLRAEVLGKQKNERLPAIA 980 (1107)
Q Consensus 903 ~PfmPfitEelwq~L~~~~~~~~~~SI~~a~~P~~~~~~~d~~~-e~~~e~v~~vi~~iRslr~~~~~k~i~~~~~~~I 980 (1107)
||||||+||+|||+|+.... ...+||+.+.||. .....+... +..++.+.++++.+|++|+.. +++.+.++.|
T Consensus 78 ~P~~P~~aEeiw~~l~~~~~-~~~~si~~~~~p~-~~~~~~~~~~~~~~~~~~~v~~~i~~~r~~~---~i~~~~~~~v 151 (153)
T PF08264_consen 78 SPFMPFIAEEIWQRLKSEKL-GEKSSIFLEKWPE-DPEFIDEELEEEAFEILKEVVQVIRKIRKEK---NIKPKEPLKV 151 (153)
T ss_dssp TTTSHHHHHHHHHHCTTHHT-TSSSSGGGS------GGGGHHHH-HHHHHHHHHHHHHHHHHHHCC---EESTTCGEEE
T ss_pred CCCCcHHHHHHHHHhhhccC-CCCCeeeeCCCCC-ChhhhcHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCc
Confidence 99999999999998842211 3458999999998 543335555 789999999999999999998 7755555443
No 62
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.88 E-value=2.1e-22 Score=241.59 Aligned_cols=125 Identities=18% Similarity=0.157 Sum_probs=90.8
Q ss_pred CCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccC--------hhHHHHHHHHHHHHhCCCcc
Q 001289 174 KPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAG--------IATQVVVEKKLMRERKLTRH 245 (1107)
Q Consensus 174 k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~G--------i~~q~~vEk~l~~~~g~~~~ 245 (1107)
++.++|.+|+ +|||.+||||++.++..|+++|+.|++|++|.+++|+|.|| +|.+..+++. .|+...
T Consensus 22 ~~~~~~~~g~-~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~----~G~pl~ 96 (510)
T PRK00750 22 KPPVVVETGI-GPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEY----LGKPLT 96 (510)
T ss_pred CCcEEEEeCC-CCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHh----cCcccc
Confidence 3458888887 59999999999999999999999999999999999999998 7765444443 465533
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhH-HHHHHHHHHHHHcCCE
Q 001289 246 DIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRS-KAVTEAFVRLYKEGLI 308 (1107)
Q Consensus 246 d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~-~~v~~~F~~L~~~GlI 308 (1107)
.+... |=. +..|++.+...+.+.|.++|+++| .+.|.+-..+ .....++.-|.+.+.|
T Consensus 97 ~~p~p-~G~-~~~~~~~~~~~~~~~~~~~gi~~d---~~~~t~~y~~g~~~~~i~~~l~~~~~i 155 (510)
T PRK00750 97 EIPDP-FGC-HESYAEHFNAPLREFLDRFGIEYE---FISATECYKSGRYDEAILTALENRDEI 155 (510)
T ss_pred cCCCC-CCC-chHHHHHHHHHHHHHHHHcCCceE---EEehhhhhccCchHHHHHHHHHhHHHH
Confidence 32211 111 578999999999999999999998 3333332222 3344444555555554
No 63
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A ....
Probab=99.88 E-value=9.6e-23 Score=212.13 Aligned_cols=127 Identities=39% Similarity=0.626 Sum_probs=98.2
Q ss_pred EEEeeecCCCcceEEEeeccccccccCcEEEEcCCCccc---------------------------------ccccCcEE
Q 001289 356 TSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARY---------------------------------SHLHGKFA 402 (1107)
Q Consensus 356 ~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry---------------------------------~~l~Gk~~ 402 (1107)
..+.|++.++++.|.|+||||+||+|.+.||+.|+++.- .-+.|.++
T Consensus 10 ~~i~F~i~~~~~~i~vFTTrpdTifGvtfials~~H~lv~~l~~~~~~l~~fi~~~~~~~~~~~~~~~~~k~Gv~tg~~a 89 (185)
T PF13603_consen 10 AEIDFKIKGSNEKIEVFTTRPDTIFGVTFIALSPEHPLVKKLAENNPELQEFIEKCKKIKNSERNKDFKEKEGVFTGLYA 89 (185)
T ss_dssp EEEEEEBTTSSCEEEEEES-GGGGGG--EEEEETTSCHHHHCTTTHHHHHHHHHHHHTS-HHHHHHCSSS--EEEEEEEE
T ss_pred EEEEEEecCCCCEEEEEECCcchhhCceEEEECCCCHHHHhhhhhhhhHHHHHHHHhcCCHhHhhhhccccccCcCCCEE
Confidence 357788888888999999999999999999999998721 02468999
Q ss_pred ecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCC----------------CCccccCCCC
Q 001289 403 IHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTD----------------DGKINSNGGL 466 (1107)
Q Consensus 403 ~~P~~~~~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~----------------dG~~~~~~g~ 466 (1107)
.||++++++||+..+| |.+++||||||.|||||.+||++|++||||+..||.. +|.|. |+|
T Consensus 90 ihP~t~~~iPI~va~y-Vl~~yGtgAVmgvPahD~rD~~FAk~~~lpi~~Vi~~~~~~~~~~~~~~~~~~~G~l~-nS~- 166 (185)
T PF13603_consen 90 IHPLTGKKIPIYVANY-VLMDYGTGAVMGVPAHDERDFEFAKKYNLPIKQVIKPKDDNEEIDNKQEAYTGDGILI-NSG- 166 (185)
T ss_dssp E-TTTS-EEEEEEETT-S-TTSTTSEEEE-CCC-HHHHHHHHHHT------EEBSSSS---STTSS---S--EE--SSG-
T ss_pred ECCCCCCCccEEEECc-eeecCCcceEEEcCCCCHHHHHHHHHcCCCeeEEEcCCCCcccccccccCcCCCEEEE-eCC-
Confidence 9999999999999995 9999999999999999999999999999999888853 36676 788
Q ss_pred CCCCCChhhHHHHHHHHHH
Q 001289 467 EFEGMPRFKAREAVNEALK 485 (1107)
Q Consensus 467 ~f~Gl~~~~ar~~vi~~L~ 485 (1107)
+|.||+..+|+++|++.|+
T Consensus 167 ~f~Gl~~~eA~~~I~~~Le 185 (185)
T PF13603_consen 167 EFNGLSSKEAREKIIKKLE 185 (185)
T ss_dssp GGTTSBHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhC
Confidence 9999999999999999985
No 64
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.88 E-value=4.4e-23 Score=227.14 Aligned_cols=123 Identities=20% Similarity=0.254 Sum_probs=89.3
Q ss_pred cEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHH
Q 001289 176 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSE 255 (1107)
Q Consensus 176 ~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~ 255 (1107)
+.|+|- |+|...+|||||++++..|++.||.+..||+|.++.+.-...=.| -++. ++.|++.
T Consensus 10 ~~Y~CG--PTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKi----i~~A-~~~g~~~----------- 71 (300)
T PF01406_consen 10 RMYVCG--PTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKI----IKRA-REEGVSP----------- 71 (300)
T ss_dssp EEEEEE--EBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHH----HHHH-HHTTS-H-----------
T ss_pred EEEcCC--CCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHH----HHHH-HhccCCH-----------
Confidence 455554 778899999999999999999999999999999999865543333 2221 3456653
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEee-eeeeecCC
Q 001289 256 VWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL-RLVNWDCV 320 (1107)
Q Consensus 256 ~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~-~~V~W~p~ 320 (1107)
++.+..|.+.+.+.|++||+.-...-+..| ++...+.+...+|.++|+.|... .-|+++..
T Consensus 72 -~ela~~y~~~f~~dm~~Lnv~~p~~~prat---e~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~ 133 (300)
T PF01406_consen 72 -QELARRYEEEFFEDMKALNVLPPDHYPRAT---EHIPEIIELIEKLIDKGHAYESEDGSVYFDVS 133 (300)
T ss_dssp -HHHHHHHHHHHHHHHHHTT----SEEEEGG---GGHHHHHHHHHHHHHTTSEEEETTSEEEE-CC
T ss_pred -HHHHHHHHHHHHHHHHHcCCCCCccccchh---ccHHHHHHHHHHHHHCCCeEEcCCCcEEEeec
Confidence 467888999999999999998763333334 78889999999999999999998 88887764
No 65
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.86 E-value=1.5e-19 Score=220.73 Aligned_cols=220 Identities=18% Similarity=0.125 Sum_probs=135.4
Q ss_pred cccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCccccccccCchhHHHHhhcCCC-ChHHHH
Q 001289 662 GHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNL-DPKELE 740 (1107)
Q Consensus 662 G~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl-~~~e~~ 740 (1107)
|.|+ ..++.++......+ |..+-+++.+|++.+ ..|.|||||+||+|+|.|+++... +...+.+...+- +..+
T Consensus 335 g~~q-~~h~~~v~~~l~~l-G~~~~~~l~h~~~~~-V~~~kmSkr~Gn~V~~~dll~~~~-~ra~~~i~~~~~~~~~~-- 408 (566)
T TIGR00456 335 GSDH-HLHIAQFFAILEKL-GFYKKKELIHLNFGM-VPLGSMKTRRGNVISLDNLLDEAS-KRAGNVITIKNDLEEED-- 408 (566)
T ss_pred cCcH-HHHHHHHHHHHHHc-CCCCCCceEEEEEEE-EECCCCCccCCceeeHHHHHHHHH-HHHHHHHHhcCCccHHH--
Confidence 5553 34566665444433 422337888888776 467899999999999999987210 000111111111 1111
Q ss_pred HHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHHHH-HHHHHHHHHHHHHhhhhCC---CCCCCCCCCC
Q 001289 741 VAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYR-QWCNKLWNAVRFSMSKLGE---GFVPPLKLHP 816 (1107)
Q Consensus 741 ~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r-~f~nKl~N~~rf~l~~l~~---~~~p~~~~~~ 816 (1107)
-+..+|+||+||++++.. .+.|++||++.+.... +..+-+-|+..++.+.+.. +..+....+.
T Consensus 409 ------------~~~~vg~dAvRy~~L~~~-~~~d~~Fd~d~~~~~~~n~~~yiqYa~aR~~SIlrK~~~~~~~~~~~~~ 475 (566)
T TIGR00456 409 ------------VADAVGIGAVRYFDLSQN-RETHYVFDWDAMLSFEGNTAPYIQYAHARICSILRKADIDGEKLIADDF 475 (566)
T ss_pred ------------HHHHhcccceeeHHhhcC-CCCCceecHHHHhccCCCCchhHHHHHHHHHHHHHhccccccccccccc
Confidence 223799999999999977 5789999999865421 1223333333333222211 1111111111
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHH
Q 001289 817 HNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLE 896 (1107)
Q Consensus 817 ~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~ 896 (1107)
......++.++..+..+...+.+++++++++.++..+++++ ..+|.|++.+ +.+..++++....|.........+|.
T Consensus 476 ~~~~~~e~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~l~~La--~~~N~yy~~~-~Vl~~~~~~~~~~RL~L~~a~~~vl~ 552 (566)
T TIGR00456 476 SLLEEKEKELLKLLLQFPDVLEEAAEELEPHVLTNYLYELA--SLFSSFYKAC-PVLDAENENLAAARLALLKATRQTLK 552 (566)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH--HHHHHHHhcC-ccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12245677889999999999999999999999999999986 7778888876 55543333222245555555666777
Q ss_pred HHHHHHh
Q 001289 897 TGLRLLH 903 (1107)
Q Consensus 897 ~~l~LL~ 903 (1107)
.+|.||.
T Consensus 553 ~gL~lLG 559 (566)
T TIGR00456 553 NGLQLLG 559 (566)
T ss_pred HHHHhcC
Confidence 7888774
No 66
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1e-18 Score=198.14 Aligned_cols=168 Identities=17% Similarity=0.173 Sum_probs=138.3
Q ss_pred cCcccccccccchHHHHHHHHHHHhcCCCCccEEEEc-ceeeCCCCccccccCCCccCccccccccCchhHHHHhhcCCC
Q 001289 656 TSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLH-PMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNL 734 (1107)
Q Consensus 656 ~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~H-g~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl 734 (1107)
.|++-+|.|+-|-+.-.-++.+.+.....++-+.++| |++. .+|+|||||++|+|+..+++.
T Consensus 259 lDIH~GG~DL~FPHHeNEiAQ~eA~~~~~~wVnYflHtGhL~-i~g~KMSKSLkNFiTIke~Lk---------------- 321 (586)
T KOG2007|consen 259 LDIHGGGIDLAFPHHENEIAQSEAAFDDSQWVNYFLHTGHLT-INGEKMSKSLKNFITIKEALK---------------- 321 (586)
T ss_pred cceecCcccccCCCcccHHHHHHHHhcCCccceeEEEcCeee-eccchhhhhhccceeHHHHHH----------------
Confidence 4788899999999999999999998888889999999 5555 899999999999999999998
Q ss_pred ChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCC
Q 001289 735 DPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKL 814 (1107)
Q Consensus 735 ~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r~f~nKl~N~~rf~l~~l~~~~~p~~~~ 814 (1107)
.|.+++||++++. .....+++|+.+.++....+...+.|++.-+.... +.-.|
T Consensus 322 ---------------------~~sp~qLRl~fl~-~~wr~~ldYs~s~m~~a~q~e~~~~~ff~~~~al~-~~~~~---- 374 (586)
T KOG2007|consen 322 ---------------------KYSPRQLRLAFLL-HQWRSPLDYSDSTMEQALQLEKSLNNFFLDVKALL-RGAKP---- 374 (586)
T ss_pred ---------------------hcCHHHHHHHHHH-HHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHH-hccch----
Confidence 8999999999886 45567999999999888887777777654332222 21111
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhHhHHHHHhhc
Q 001289 815 HPHNLPFSCKWILSVLNKAISRTASSL-NSYEFSDAASTVYSWWQYQFCDVFIEAIK 870 (1107)
Q Consensus 815 ~~~~~~~~D~wil~~L~~~~~~v~~a~-e~~~f~~a~~~i~~f~~~~l~d~Yie~~K 870 (1107)
....+..+.-++.++..+..++..++ ++++-..++..+.+++ ..+|.||....
T Consensus 375 -~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~lv--s~~N~~i~~~~ 428 (586)
T KOG2007|consen 375 -FEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEAIRELV--SQGNAYIRESG 428 (586)
T ss_pred -hhccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHHHHHHH--hhhhHHHHHhc
Confidence 23567788889999999999998888 7799999999999986 78999998765
No 67
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=6.9e-16 Score=186.07 Aligned_cols=214 Identities=20% Similarity=0.263 Sum_probs=130.0
Q ss_pred cccccchHHHHHHHHHHHhcCCCCccEEEEc---ceeeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCChHH
Q 001289 662 GHDILFFWVARMVMLGIKLGGEVPFTKVYLH---PMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKE 738 (1107)
Q Consensus 662 G~Dil~fW~armi~~~~~l~g~~PFk~V~~H---g~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e 738 (1107)
|.|+ ..++.++... +.+.|..|-+.+++| |++++.+|.||||-.||+|...|+++-. . ...+.+
T Consensus 342 gadq-~~~~~ql~~~-l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~~vtl~dllde~-----~------era~~~ 408 (577)
T COG0018 342 GADQ-HGHFKQLKAV-LELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEA-----G------ERAPEE 408 (577)
T ss_pred CCcc-hhHHHHHHHH-HHHhcCCCccceEEEEEEeeeECCCCccccccCCceEEHHHHHHHH-----H------HHhhhH
Confidence 5554 3455555442 223344443455555 8888999999999999999999998721 1 111111
Q ss_pred HHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHHH------------HHHHHHHHHHHHHHhhhhCC
Q 001289 739 LEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGY------------RQWCNKLWNAVRFSMSKLGE 806 (1107)
Q Consensus 739 ~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~------------r~f~nKl~N~~rf~l~~l~~ 806 (1107)
++.. .+.. -+-....|.||+||++++..+. .++.||++.+.+. .+.|.-+.++- .. ..
T Consensus 409 ~~~~---~~~~-~~iA~~vgi~Avry~~l~~~~~-~~~~Fd~d~~lsfegNt~pYvQYA~ARi~SIlrka~----e~-~~ 478 (577)
T COG0018 409 MEEK---EEKN-EEIAEVVGIDAVRYADLSRSRD-KDYVFDWDKALSFEGNTAPYVQYAHARICSILRKAG----ED-EL 478 (577)
T ss_pred hhhh---hhhh-HHHHHHhhhhhHHHHHHhcCCC-CCcEeeHHHHHhccCCCchhHHHHHHHHHHHHHhcc----cc-cc
Confidence 1111 0000 1122368999999999986654 6999999987541 22222222211 00 00
Q ss_pred CCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHHHHhhcccccCCCcccHHHHHH
Q 001289 807 GFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSA 886 (1107)
Q Consensus 807 ~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~~~~~~~~~~~~ 886 (1107)
.+. ......-..+.++-++.+|.++...+.++.+.++.+..+..+|++. ..|+++|=. + |.+..++++....|..
T Consensus 479 ~~~--~~~~~~l~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA-~~Fn~fY~~-~-~Vl~~~~~~~~~aRL~ 553 (577)
T COG0018 479 DLS--TEADALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLA-GSFNSFYNA-C-PVLGAENEELRAARLA 553 (577)
T ss_pred ccc--cccchhccChHHHHHHHHHHHhHHHHHHHHHhcCchHHHHHHHHHH-HHHHHHHhh-C-CcCCCCcHHHHHHHHH
Confidence 010 0000011223367799999999999999999999999999999997 899999943 2 4444444322234555
Q ss_pred HHHHHHHHHHHHHHHHh
Q 001289 887 AQHVLWVCLETGLRLLH 903 (1107)
Q Consensus 887 a~~~L~~~l~~~l~LL~ 903 (1107)
.......+|..+|.||-
T Consensus 554 L~~a~~~vL~ngL~LLG 570 (577)
T COG0018 554 LVKATRQVLKNGLDLLG 570 (577)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 55566667788888774
No 68
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.72 E-value=8.3e-17 Score=192.17 Aligned_cols=97 Identities=18% Similarity=0.158 Sum_probs=75.7
Q ss_pred CcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCcc--------ChhHHHHHHHHHHHHhCCCccc
Q 001289 175 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHA--------GIATQVVVEKKLMRERKLTRHD 246 (1107)
Q Consensus 175 ~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~--------Gi~~q~~vEk~l~~~~g~~~~d 246 (1107)
.+++|.+|.+ |||.+||||++..+..|+++|+.|++|++|.+++|+|++ ++| + ..++. -|+....
T Consensus 18 ~~~~~~tg~~-psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p-~-~~~~y----lG~Pl~~ 90 (515)
T TIGR00467 18 NLYTVASGIT-PSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLP-E-ELETY----LGMPLTR 90 (515)
T ss_pred CeEEEecCCC-CCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCccccccccccc-H-HHHHh----CCCccee
Confidence 3699999999 999999999999999999999999999999999999999 455 1 13333 2433222
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 001289 247 IGREQFVSEVWKWKDEYGGTILRQQRRLGASLDW 280 (1107)
Q Consensus 247 ~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW 280 (1107)
++. .| ..+..|++.|...+.+.|..||+.+++
T Consensus 91 vpd-p~-g~~~s~~~h~~~~~~~~l~~~gi~~e~ 122 (515)
T TIGR00467 91 IPD-PE-GCKTSYAEHFLIPFLESLPVLGINPEF 122 (515)
T ss_pred cCC-CC-CCcHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 211 11 113689999999999999999998873
No 69
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.70 E-value=3.1e-14 Score=173.76 Aligned_cols=208 Identities=22% Similarity=0.181 Sum_probs=126.8
Q ss_pred cccccchHHHHHHHHHHHhcCCCC--ccEEEEcceeeCCCCccccccCCCccCccccccccCchhHHHHhhcCC--CChH
Q 001289 662 GHDILFFWVARMVMLGIKLGGEVP--FTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGN--LDPK 737 (1107)
Q Consensus 662 G~Dil~fW~armi~~~~~l~g~~P--Fk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~n--l~~~ 737 (1107)
|.|+ ..++.++....- ..|..+ --.++.+|+|. .+|+||||.+||+|...|+++-. .+...+.+.+.+ |++.
T Consensus 332 g~dq-~~h~~~l~~~~~-~lg~~~~~~l~h~~~g~V~-~~g~kmStR~G~~v~l~dLldea-~~~a~~~~~~~~~~l~~~ 407 (562)
T PRK12451 332 GPEQ-SLHFNQFFTVLK-KLGYTWVDGMEHVPFGLIL-KDGKKMSTRKGRVVLLEEVLEEA-IELAKQNIEEKNPNLKQK 407 (562)
T ss_pred CCcH-HHHHHHHHHHHH-HcCCCcccCeEEEeeeeEe-cCCCCCcCCCCCeeEHHHHHHHH-HHHHHHHHHhhccccccH
Confidence 5553 345555544333 334322 13467889998 68899999999999999999721 111122222222 2221
Q ss_pred HHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHH------------HHHHHHHHHHHHHHHhhhhC
Q 001289 738 ELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG------------YRQWCNKLWNAVRFSMSKLG 805 (1107)
Q Consensus 738 e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~------------~r~f~nKl~N~~rf~l~~l~ 805 (1107)
|. .|. .-|.||+||++++... ..++.||++.+.. +.+.|.-+..+ +
T Consensus 408 ~~-~a~------------~vg~~Airy~~l~~~~-~~~~~Fd~d~~l~~~g~t~pYiQYa~AR~~SIlrka--------~ 465 (562)
T PRK12451 408 EE-VAK------------QVGVGAVIFHDLKNER-MHNIEFSLENMLKFEGETGPYVQYTHARACSILRKE--------S 465 (562)
T ss_pred HH-HHH------------HhccceeeeHHhhcCC-CCCceECHHHHhCcCCCccHHHHHHHHHHHHHHHhc--------C
Confidence 11 111 6789999999998655 4699999998532 22333322221 1
Q ss_pred CCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHHHHhhcccccCCCcccHHHHH
Q 001289 806 EGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERS 885 (1107)
Q Consensus 806 ~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~~~~~~~~~~~ 885 (1107)
.++.. ....-..+.+.-++..+..+...+.+++++++++.++..+++++ ...|.|++.+ +.+. +++....|.
T Consensus 466 ~~~~~---~~~~l~~~~E~~Ll~~L~~~~~~v~~a~e~~ep~~~~~yl~~LA--~~fN~fy~~~-~Vl~--~~~~~~~RL 537 (562)
T PRK12451 466 VEFET---CTFALKDDYSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVA--QSFNKYYGNV-RILE--ESAEKDSRL 537 (562)
T ss_pred CCccc---cccCCCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHHHHhC-CCCC--CHHHHHHHH
Confidence 11110 11111245567789999999999999999999999999999986 5666677654 3442 222122444
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 001289 886 AAQHVLWVCLETGLRLLH 903 (1107)
Q Consensus 886 ~a~~~L~~~l~~~l~LL~ 903 (1107)
........+|..+|.||.
T Consensus 538 ~L~~a~~~vL~~gL~LLG 555 (562)
T PRK12451 538 ALVYAVTVVLKEGLRLLG 555 (562)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 455555667777777774
No 70
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=99.67 E-value=1e-15 Score=153.19 Aligned_cols=135 Identities=47% Similarity=0.895 Sum_probs=108.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001289 778 LDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWW 857 (1107)
Q Consensus 778 f~~~~v~~~r~f~nKl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~ 857 (1107)
||.+.+.+.++|++|+||+.+|+.+.... +.+... +.......|+|+++.++.++..+.++|++|+|+.|++.+++++
T Consensus 1 ~~~~~~~~~~~~l~k~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~~~ 78 (135)
T cd07962 1 FDEKRVEGGRNFCNKLWNAARFVLMNLED-DDEPEE-DPESLSLADRWILSRLNKTVEEVTEALENYRFSEAATALYEFF 78 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccc-cCcccc-ccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 67889999999999999999998553221 222110 1123456789999999999999999999999999999999998
Q ss_pred HHhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhC
Q 001289 858 QYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRL 917 (1107)
Q Consensus 858 ~~~l~d~Yie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L 917 (1107)
..+++|+|++..+||....+.. .......++..++..+++||+|||||+||+||+.|
T Consensus 79 ~~~~~N~Yi~~~~pW~~~~~~~---~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 79 WNDFCDWYLELVKPRLYGEDEE---EKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHHHhHHHHHHhhHHHcCCChH---HHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhcC
Confidence 5569999999999995543322 34456778888999999999999999999999875
No 71
>PLN02286 arginine-tRNA ligase
Probab=99.65 E-value=3.5e-13 Score=164.67 Aligned_cols=214 Identities=10% Similarity=0.078 Sum_probs=132.8
Q ss_pred cccccchHHHHHHHHHHHhcCCC-C----ccEEEEcceeeCCCCccccccCCCccCccccccccCchhHHHHhhc----C
Q 001289 662 GHDILFFWVARMVMLGIKLGGEV-P----FTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEE----G 732 (1107)
Q Consensus 662 G~Dil~fW~armi~~~~~l~g~~-P----Fk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~----~ 732 (1107)
|.|+ ..++.++....- ..|.. + --.++.+|||+..+|+||||..||+|...|+++-. .+...+.+.+ .
T Consensus 335 g~~q-~~hf~~v~~~l~-~lG~~~~~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea-~~~a~~~~~~~~~~~ 411 (576)
T PLN02286 335 DVGQ-QQHFDMVFKAAK-RAGWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEA-KSRSKAALIERGKDS 411 (576)
T ss_pred eCcH-HHHHHHHHHHHH-HcCCCccccCCceEEEeeccEECCCCCcccCCCCCeeEHHHHHHHH-HHHHHHHHHhccCcc
Confidence 4443 345555554333 33432 2 13578899998788999999999999999999831 1111112221 1
Q ss_pred CCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHH------------HHHHHHHHHHHHHHH
Q 001289 733 NLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG------------YRQWCNKLWNAVRFS 800 (1107)
Q Consensus 733 nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~------------~r~f~nKl~N~~rf~ 800 (1107)
.+++.|.+... ...|.||+||++++... ..+++||++.+.. +.+.|.-+.++-
T Consensus 412 ~~~~~~~~~~a-----------~~vg~~Airy~~L~~~~-~~~~~Fd~d~~l~~~g~t~pYlQYahAR~~SIlrKa~--- 476 (576)
T PLN02286 412 EWTPEELEQAA-----------EAVGYGAVKYADLKNNR-LTNYTFSFDQMLDLKGNTAVYLLYAHARICSIIRKSG--- 476 (576)
T ss_pred ccchhhHHHHH-----------HHhhhhhhhhhhhhcCC-CCCCccCHHHHHhhcCCChHHHHHHHHHHHHHHHhcc---
Confidence 24333332211 16899999999998655 4699999998543 222332222210
Q ss_pred hhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHHHHhhcccccCCCccc
Q 001289 801 MSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAF 880 (1107)
Q Consensus 801 l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~~~~~~ 880 (1107)
... ..+.... ...-..+.++-++..|..+...+.++.++++.+..++.++++. ..|..+|=+ + +.+..++..
T Consensus 477 -~~~-~~~~~~~--~~~l~~~~E~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~LA-~~F~~fY~~-~-~Vl~~~~~~- 548 (576)
T PLN02286 477 -KDI-DELKKTG--KIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLS-EKFTKFYSN-C-KVNGSEEET- 548 (576)
T ss_pred -Ccc-ccccccc--cccCCCHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH-HHHHHHHhc-C-ccCCCCchh-
Confidence 000 0010000 0112245677889999999999999999999999999999987 788888843 2 555432222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 001289 881 ASERSAAQHVLWVCLETGLRLLH 903 (1107)
Q Consensus 881 ~~~~~~a~~~L~~~l~~~l~LL~ 903 (1107)
.|.........+|..+|.||-
T Consensus 549 --aRL~L~~a~~~vL~~gL~LLG 569 (576)
T PLN02286 549 --SRLLLCEATAIVMRKCFHLLG 569 (576)
T ss_pred --HHHHHHHHHHHHHHHHHHhcC
Confidence 566666666777888888874
No 72
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.62 E-value=2.6e-15 Score=161.73 Aligned_cols=122 Identities=20% Similarity=0.234 Sum_probs=105.7
Q ss_pred EEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHH
Q 001289 177 FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEV 256 (1107)
Q Consensus 177 f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~ 256 (1107)
.+|=..+|||||.|||||+++.++.|+++||.|+.|++|.+..|+|++|.+++..++... .+
T Consensus 2 v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~------------------~~ 63 (212)
T cd00671 2 ILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLE------------------KW 63 (212)
T ss_pred eEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHH------------------HH
Confidence 456678999999999999999999999999999999999999999999999987775431 16
Q ss_pred HHHHHHHHHHHHHHHHHhcCccc-cCCccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCC
Q 001289 257 WKWKDEYGGTILRQQRRLGASLD-WSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVL 321 (1107)
Q Consensus 257 ~~w~~~~~~~i~~ql~~lG~s~D-W~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~ 321 (1107)
+++++.+...+.+.+++||+++| |.+ |.+. ...+..++.+|.++|++|...--+..|+..
T Consensus 64 ~~~~~~~~~~~~~~~~~L~i~~d~~~~---es~~--~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~ 124 (212)
T cd00671 64 RKLVEESIKADLETYGRLDVRFDVWFG---ESSY--LGLMGKVVELLEELGLLYEEDGALWLDLTE 124 (212)
T ss_pred HHHHHHHHHHHHHHHHHhCCcCceecc---hhhh--hhHHHHHHHHHHHCCCEEEeCCcEEEechh
Confidence 78899999999999999999998 544 4443 778999999999999999998777777643
No 73
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.62 E-value=6.1e-15 Score=143.16 Aligned_cols=116 Identities=22% Similarity=0.328 Sum_probs=96.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH-HHH
Q 001289 778 LDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTV-YSW 856 (1107)
Q Consensus 778 f~~~~v~~~r~f~nKl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i-~~f 856 (1107)
|+.+.+.++.+|++++|+.+....+ . ..|. ...+..|+|++++++.+++++.++|++|+|+.|++.+ +.|
T Consensus 1 w~~~~~~~~~~~l~R~~~~~~~~~~---~-~~~~-----~~~~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~ 71 (117)
T cd07959 1 FREEEANSAILRLERFYELAEELIE---T-EGEL-----EELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYEL 71 (117)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHh---c-cCCc-----cccchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5677889999999999998865221 1 1221 1345789999999999999999999999999999997 777
Q ss_pred HHHhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhC
Q 001289 857 WQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRL 917 (1107)
Q Consensus 857 ~~~~l~d~Yie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L 917 (1107)
+ .+||+|++.++|+ .++.+++.+++.+++||+|||||+|||||+.|
T Consensus 72 ~--~~~~~Y~~~~~~~-------------~~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~~ 117 (117)
T cd07959 72 Q--NDLDWYRERGGAG-------------MNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred H--HHHHHHHHHhCcc-------------chHHHHHHHHHHHHHHHcCcchHhHHHHHhhC
Confidence 4 5899999998886 12458999999999999999999999999975
No 74
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.56 E-value=3e-14 Score=137.98 Aligned_cols=117 Identities=24% Similarity=0.339 Sum_probs=94.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001289 778 LDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWW 857 (1107)
Q Consensus 778 f~~~~v~~~r~f~nKl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~ 857 (1107)
||.+.+.++++|+|++||++++..+. ..|.. ........|+|++++++++++++.++|++|+|+.|++.+++|+
T Consensus 1 w~~~~~~~~~n~l~R~~~~~~~~~~~----~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~ 74 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTELAEA----LAAPA--AAAELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELV 74 (117)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHhh----ccccc--cccccchhhHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence 67888999999999999998764322 11211 0113456799999999999999999999999999999999997
Q ss_pred HHhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhC
Q 001289 858 QYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRL 917 (1107)
Q Consensus 858 ~~~l~d~Yie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L 917 (1107)
..+|.|++..+| ...++..+++.+++||+|||||+||+||+.|
T Consensus 75 --~~~n~~~~~~~p---------------~~~~~~~~l~~~~~lL~P~~P~~aeei~~~l 117 (117)
T cd07958 75 --NALYKYKKKDAQ---------------HAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred --HHHHHhhccccc---------------hHHHHHHHHHHHHHHHcccchHHHHHHHhhC
Confidence 457888764332 3568889999999999999999999999875
No 75
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.52 E-value=1.3e-13 Score=135.93 Aligned_cols=124 Identities=20% Similarity=0.297 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHh
Q 001289 783 VVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFC 862 (1107)
Q Consensus 783 v~~~r~f~nKl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~ 862 (1107)
+..+.++++++++.+. .... +..|.. ......|+|++++++++++++.++|++|+|+.|++.+++|+ ++|
T Consensus 6 ~~~~gnll~r~~~~~~---~~~~-~~~~~~----~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~ 75 (129)
T cd07957 6 ANNLGNLVNRTLNMAS---KYFG-GVVPEF----GGLTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELA--RAA 75 (129)
T ss_pred HhhHhhHHHHHHHHHH---HHcC-CcCCCC----CCCCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHH
Confidence 3445567777666443 2222 122211 12456799999999999999999999999999999999997 799
Q ss_pred HHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhC
Q 001289 863 DVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRL 917 (1107)
Q Consensus 863 d~Yie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L 917 (1107)
|+|++..|||...+++. ....+.+..++..++..+++||+|||||+|||||+.|
T Consensus 76 n~y~~~~kpw~~~~~~~-~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~l 129 (129)
T cd07957 76 NKYIDETAPWKLAKEED-PERLATVLYVLLELLRILAILLSPFMPETAEKILDQL 129 (129)
T ss_pred HhhhccCCCHHHHccCC-HHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHhC
Confidence 99999999996543211 0133445567777789999999999999999999975
No 76
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=99.29 E-value=7.1e-12 Score=109.73 Aligned_cols=66 Identities=32% Similarity=0.524 Sum_probs=61.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001289 1039 DIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLG 1104 (1107)
Q Consensus 1039 D~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~~l~ 1104 (1107)
|+++|++||+|+++++++++++++++|+|++|++|||++||+.+++||++++.+++.+++.|+.|+
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 789999999999999999999999999999999999999999999999999999999999999874
No 77
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=99.27 E-value=6.9e-11 Score=136.97 Aligned_cols=138 Identities=24% Similarity=0.293 Sum_probs=88.4
Q ss_pred CCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHH---HHHHHHH---------
Q 001289 172 SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVV---EKKLMRE--------- 239 (1107)
Q Consensus 172 ~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~v---Ek~l~~~--------- 239 (1107)
...++.+|=..=|||||+|||||+++.+|.|+|+|-.+-.||+|.-..-....|..+-..+ .+....+
T Consensus 17 ~~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~ 96 (354)
T PF00750_consen 17 GKGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEELLEEDPIKH 96 (354)
T ss_dssp TTSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSHSSCHHH
T ss_pred CCCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhcccccccc
Confidence 3446888889999999999999999999999999999999999999888888887653322 1111000
Q ss_pred -------------hCCC----cccc---ChHHHHH-------HHHHHHHHHHHHHHHHHHHhcCccc-cCCccccCChhh
Q 001289 240 -------------RKLT----RHDI---GREQFVS-------EVWKWKDEYGGTILRQQRRLGASLD-WSRECFTMDEKR 291 (1107)
Q Consensus 240 -------------~g~~----~~d~---~re~f~~-------~~~~w~~~~~~~i~~ql~~lG~s~D-W~r~~~T~d~~~ 291 (1107)
.... ..++ .++.|.+ -...|.....+.++++|.++|+.+| |..+ .+-.+
T Consensus 97 l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~fDv~~~E---~Es~~ 173 (354)
T PF00750_consen 97 LEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIRFDVWFDE---SESFY 173 (354)
T ss_dssp HHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT---SEEEEH---CHHHH
T ss_pred hhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhCcCccc---chhhh
Confidence 0000 0000 0111111 0123444577788999999999999 5433 33345
Q ss_pred HHHHHHHHHHHHHcCCEEEee
Q 001289 292 SKAVTEAFVRLYKEGLIYRDL 312 (1107)
Q Consensus 292 ~~~v~~~F~~L~~~GlIyr~~ 312 (1107)
...+..++.+|.++|++|+..
T Consensus 174 ~~~v~~vl~~L~e~g~~~~~d 194 (354)
T PF00750_consen 174 SGKVDEVLERLKEKGLLYESD 194 (354)
T ss_dssp TTHHHHHHHHHHCTTTEEEET
T ss_pred hhHHHHHHHHHHhCCcEEecC
Confidence 667899999999999999754
No 78
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=99.24 E-value=8.8e-11 Score=113.04 Aligned_cols=116 Identities=23% Similarity=0.373 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 001289 781 QRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQ 860 (1107)
Q Consensus 781 ~~v~~~r~f~nKl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~ 860 (1107)
+.+.+.++|+|++||+++|+.....+ ..|... .......|+|++++++.++..+.++|++|+|+.|++.+++|+ +.
T Consensus 2 ~~v~~~~~~~n~~~r~~~~~~~~~~~-~~~~~~--~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~-~~ 77 (117)
T cd07375 2 ERLKQARAFLNRLYRLLSFFRKALGG-TQPKWD--NELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFT-NE 77 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCcC--hhhcCHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-Hh
Confidence 46788999999999999997654432 222110 012346799999999999999999999999999999999997 34
Q ss_pred HhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchh
Q 001289 861 FCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFM 906 (1107)
Q Consensus 861 l~d~Yie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~Pfm 906 (1107)
+ |+|++..|||...+. ....+..+++.++..++++|+|||
T Consensus 78 ~-n~y~~~~~pw~~~~~-----~~~~~~~~~~~~l~~l~~lL~P~~ 117 (117)
T cd07375 78 L-NWYLDELKPALQTEE-----LREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred c-cHHHHHhhHHHcCch-----hHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4 999999999976541 334566789999999999999997
No 79
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.04 E-value=4.1e-10 Score=113.90 Aligned_cols=77 Identities=21% Similarity=0.201 Sum_probs=66.1
Q ss_pred EECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHH
Q 001289 179 IVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWK 258 (1107)
Q Consensus 179 i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~ 258 (1107)
|+.+.|||||.|||||++++++.|+++||+|++|++|.++.|+|.+|.++...+.+ .+.+ +++
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~-----~~~~------------~~~ 63 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANK-----KGEN------------AKA 63 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHh-----cCCC------------HHH
Confidence 35688999999999999999999999999999999999999999999998666543 2333 457
Q ss_pred HHHHHHHHHHHHHH
Q 001289 259 WKDEYGGTILRQQR 272 (1107)
Q Consensus 259 w~~~~~~~i~~ql~ 272 (1107)
|++.+.+.++++++
T Consensus 64 ~~~~~~~~~~~~~~ 77 (143)
T cd00802 64 FVERWIERIKEDVE 77 (143)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888887
No 80
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=98.61 E-value=9.4e-08 Score=109.01 Aligned_cols=99 Identities=15% Similarity=0.168 Sum_probs=61.6
Q ss_pred CCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccC--------hhHHHHHHHHHHHHhCCCcc
Q 001289 174 KPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAG--------IATQVVVEKKLMRERKLTRH 245 (1107)
Q Consensus 174 k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~G--------i~~q~~vEk~l~~~~g~~~~ 245 (1107)
+..+++-++ =.|+|.+|||+++-.+..|++.|-.|.+|++|-++..||..- +|-+ ..++. .|+...
T Consensus 22 ~~~~v~~sG-~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~-~~~~y----lg~Plt 95 (360)
T PF01921_consen 22 KEPYVFASG-ISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNP-ELEKY----LGKPLT 95 (360)
T ss_dssp -SEEEEEEE-E--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC--CCCC----TTSBTT
T ss_pred CccEEEecC-CCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChH-HHHHh----cCCccc
Confidence 456666666 578999999999999999999999999999999999998752 3322 22221 132222
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 001289 246 DIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDW 280 (1107)
Q Consensus 246 d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW 280 (1107)
.++. -| ..+..|++.+...+.+.|..+|+-+.+
T Consensus 96 ~VPd-P~-G~~~SyaeH~~~~~~~~L~~~gie~e~ 128 (360)
T PF01921_consen 96 RVPD-PF-GCHESYAEHFNAPFEEFLDEFGIEYEF 128 (360)
T ss_dssp TSB--TT-SSSSCHHHHHHHHHHHHHHTTT---EE
T ss_pred cCCC-CC-CCCccHHHHHHHHHHHHHHHcCCceEE
Confidence 2211 11 114578999999999999999997763
No 81
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=1.2e-06 Score=102.66 Aligned_cols=98 Identities=15% Similarity=0.191 Sum_probs=73.7
Q ss_pred CcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccC--------hhHHHHHHHHHHHHhCCCccc
Q 001289 175 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAG--------IATQVVVEKKLMRERKLTRHD 246 (1107)
Q Consensus 175 ~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~G--------i~~q~~vEk~l~~~~g~~~~d 246 (1107)
..+++-++ =.|+|.+|||+++-.+..|++.|-.|-+|+.|.+++=||..- +|-+...++.+ |+....
T Consensus 19 ~~~~v~tG-isPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Yl----g~Plt~ 93 (521)
T COG1384 19 DEYVVATG-ISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYL----GMPLTE 93 (521)
T ss_pred CcEEEecC-cCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHc----CCcccc
Confidence 35666665 579999999999999999999999999999999999998764 34444555543 444333
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 001289 247 IGREQFVSEVWKWKDEYGGTILRQQRRLGASLD 279 (1107)
Q Consensus 247 ~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~D 279 (1107)
++-. | -.|..|++.+...+.+-|.++|+-+.
T Consensus 94 IPdP-~-G~~~Sya~hf~~~f~~~l~~~Gi~~E 124 (521)
T COG1384 94 IPDP-F-GCCDSYAEHFLRPFEEFLDEFGIEVE 124 (521)
T ss_pred CCCC-c-cccchHHHHHHHHHHHHHHhcCCceE
Confidence 3211 1 13567888999999999999997765
No 82
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=98.26 E-value=2.1e-05 Score=94.66 Aligned_cols=95 Identities=28% Similarity=0.320 Sum_probs=68.7
Q ss_pred EECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHH
Q 001289 179 IVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWK 258 (1107)
Q Consensus 179 i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~ 258 (1107)
.+==+|.|||.||||||++.++.-.++|-+ .|.-+|.+==+|.. |
T Consensus 6 ~~RfAPSPtG~lHiG~~rtal~n~l~Ar~~--~G~fiLRieDtD~~-------------------R-------------- 50 (476)
T PRK01406 6 RTRFAPSPTGYLHIGGARTALFNWLFARHH--GGKFILRIEDTDQE-------------------R-------------- 50 (476)
T ss_pred eEEeCCCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEEeCcCCCC-------------------C--------------
Confidence 344479999999999999999999998864 56666655555531 1
Q ss_pred HHHHHHHHHHHHHHHhcCccccCCc--------cccCChhhHHHHHHHHHHHHHcCCEEEee
Q 001289 259 WKDEYGGTILRQQRRLGASLDWSRE--------CFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1107)
Q Consensus 259 w~~~~~~~i~~ql~~lG~s~DW~r~--------~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 312 (1107)
-+..+.+.|.+.|+.||+ +|+.. |+.++ +-..-.+...+|.++|++|+..
T Consensus 51 ~~~~~~~~i~~~L~wlGl--~~De~p~~~~~gpy~QS~--r~~~y~~~~~~L~~~g~aY~C~ 108 (476)
T PRK01406 51 STEEAEEAILEGLKWLGL--DWDEGPDGGPYGPYRQSE--RLDIYKEYAEQLLEEGKAYYCY 108 (476)
T ss_pred CChHHHHHHHHHHHHCCC--CCCCCCccCCCCceehhc--CHHHHHHHHHHHHHcCCeeecC
Confidence 124566889999999996 55544 55433 3345677888999999999764
No 83
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.92 E-value=2.1e-05 Score=85.90 Aligned_cols=92 Identities=22% Similarity=0.307 Sum_probs=65.4
Q ss_pred CCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHH
Q 001289 182 PPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKD 261 (1107)
Q Consensus 182 pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~ 261 (1107)
=+|.|||.||||||++.++.++++| ++++.|+-=+|..--+ +. ....
T Consensus 6 faPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~----------------r~------------~~~~ 52 (240)
T cd09287 6 FAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPR----------------TK------------RPDP 52 (240)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCC----------------cc------------cchH
Confidence 3799999999999999999999999 4555555555442111 00 0123
Q ss_pred HHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEE
Q 001289 262 EYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYR 310 (1107)
Q Consensus 262 ~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr 310 (1107)
.+.+.|.++|+.||+ +|+..++.+ ++.+...++..+|.++|++|.
T Consensus 53 ~~~~~i~~dL~wLGl--~~d~~~~qS--~r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 53 EAYDMIPEDLEWLGV--KWDEVVIAS--DRIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred HHHHHHHHHHHHcCC--CCCCccchh--ccHHHHHHHHHHHHHcCCccc
Confidence 344569999999998 777665543 444556677889999999997
No 84
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.78 E-value=5e-05 Score=92.26 Aligned_cols=96 Identities=26% Similarity=0.314 Sum_probs=68.6
Q ss_pred ECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHH
Q 001289 180 VLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKW 259 (1107)
Q Consensus 180 ~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w 259 (1107)
+==||+|||.||||||++.++.+.++| +..|.-++-.=-+|. .| .+ .
T Consensus 104 tRFaPsPtG~LHIGharaalln~~~Ar--~~~G~~iLRidDTDp---k~--------------~R--------------~ 150 (567)
T PRK04156 104 MRFAPNPSGPLHLGHARAAILNDEYAK--MYGGKFILRFEDTDP---RT--------------KR--------------P 150 (567)
T ss_pred EEeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEeEccCCC---Cc--------------cc--------------c
Confidence 334899999999999999999999999 334554444444432 00 01 1
Q ss_pred HHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEee
Q 001289 260 KDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1107)
Q Consensus 260 ~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 312 (1107)
..++.+.|.++|+.||+ +|+..++++ .|.....+...+|.++|++|...
T Consensus 151 ~~e~~~~I~edL~wLGl--~wD~~~~qS--dr~~~y~~~a~~Li~~G~AY~C~ 199 (567)
T PRK04156 151 DPEAYDMILEDLKWLGV--KWDEVVIQS--DRLEIYYEYARKLIEMGGAYVCT 199 (567)
T ss_pred hHHHHHHHHHHHHHcCC--CCCCccCcc--cCHHHHHHHHHHHHHcCCCccCC
Confidence 23455789999999997 676766654 45566677888999999999653
No 85
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=97.58 E-value=0.00021 Score=79.82 Aligned_cols=91 Identities=24% Similarity=0.337 Sum_probs=68.3
Q ss_pred CCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHH
Q 001289 183 PPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDE 262 (1107)
Q Consensus 183 PPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~ 262 (1107)
+|.|||.||||||++.++...++| +..|.-+|.+==+|.. | -..+
T Consensus 6 APSPtG~lHiG~~rtAL~n~l~Ar--~~gG~~iLRiEDtD~~-------------------R--------------~~~~ 50 (272)
T TIGR03838 6 APSPSGPLHFGSLVAALGSYLDAR--AHGGRWLVRIEDLDPP-------------------R--------------EVPG 50 (272)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCCC-------------------C--------------CChH
Confidence 699999999999999999999999 4467777766555541 0 0234
Q ss_pred HHHHHHHHHHHhcCccccCCc-cccCChhhHHHHHHHHHHHHHcCCEEEee
Q 001289 263 YGGTILRQQRRLGASLDWSRE-CFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1107)
Q Consensus 263 ~~~~i~~ql~~lG~s~DW~r~-~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 312 (1107)
+.+.|.++|+.||+ +|+.. ++.. .+.+.-.++..+|.++|++|...
T Consensus 51 ~~~~I~~dL~wLGl--~wDe~~~~QS--~r~~~Y~~~~~~L~~~G~aY~C~ 97 (272)
T TIGR03838 51 AADDILRTLEAYGL--HWDGEVVYQS--QRHALYQAALDRLLAAGLAYPCQ 97 (272)
T ss_pred HHHHHHHHHHHcCC--CCCCCeeeee--CCHHHHHHHHHHHHHcCCEEecC
Confidence 56789999999996 45553 3433 34456677889999999999764
No 86
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=97.57 E-value=0.00022 Score=85.77 Aligned_cols=96 Identities=25% Similarity=0.340 Sum_probs=72.1
Q ss_pred EEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHH
Q 001289 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1107)
Q Consensus 178 ~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~ 257 (1107)
+++==||.|||.||||||.+.++...++|-+ .|.-+|..==+|- .|
T Consensus 12 v~tRFAPsPtG~LHiGharaAlln~l~Ar~~--gG~~iLRiEDTDp-------------------~R------------- 57 (523)
T PLN03233 12 IVTRFPPEPSGYLHIGHAKAALLNDYYARRY--KGRLILRFDDTNP-------------------SK------------- 57 (523)
T ss_pred EEEeeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEECCCCC-------------------Cc-------------
Confidence 5566689999999999999999999999853 5666655443332 11
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEee
Q 001289 258 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1107)
Q Consensus 258 ~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 312 (1107)
-..+|.+.|.++|+-||+. |+..+++. .|-....+...+|.++|++|...
T Consensus 58 -~~~e~~~~I~~dL~WLGl~--wD~~~~qS--dr~~~y~~~a~~Li~~G~AY~C~ 107 (523)
T PLN03233 58 -EKAEFEESIIEDLGKIEIK--PDSVSFTS--DYFEPIRCYAIILIEEGLAYMDD 107 (523)
T ss_pred -cchHHHHHHHHHHHHhCCC--CCCCcccc--ccHHHHHHHHHHHHHcCCeEecC
Confidence 1245678999999999965 55666654 44566778899999999999764
No 87
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=97.53 E-value=0.00028 Score=85.21 Aligned_cols=96 Identities=24% Similarity=0.252 Sum_probs=69.6
Q ss_pred EEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHH
Q 001289 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1107)
Q Consensus 178 ~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~ 257 (1107)
+++==||.|||.||||||++.++...++|.+ .|.-+|..==+|.. +
T Consensus 52 v~tRFaPsPtG~LHiGharaalln~~~Ar~~--gG~~iLRiEDTDp~-------------------r------------- 97 (574)
T PTZ00437 52 PYFRFPPEPNGFLHIGHAKSMNLNFGSARAH--GGKCYLRYDDTNPE-------------------T------------- 97 (574)
T ss_pred EEEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEECCCCcc-------------------c-------------
Confidence 4455589999999999999999999999864 46655554444420 0
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEee
Q 001289 258 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1107)
Q Consensus 258 ~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 312 (1107)
-..+|.+.|.++|+.||+. |+..+++ ..|.....+...+|.++|++|...
T Consensus 98 -~~~e~~~~I~~dL~wLGi~--~D~~~~q--S~y~~~~ye~A~~Li~~G~AY~C~ 147 (574)
T PTZ00437 98 -EEQVYIDAIMEMVKWMGWK--PDWVTFS--SDYFDQLHEFAVQLIKDGKAYVDH 147 (574)
T ss_pred -cChHHHHHHHHHHHHcCCC--CCCCCcC--chhHHHHHHHHHHHHHcCCEEEcC
Confidence 1245678999999999965 5555544 345555667778999999999764
No 88
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=97.52 E-value=0.00038 Score=84.68 Aligned_cols=96 Identities=24% Similarity=0.299 Sum_probs=70.5
Q ss_pred EEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHH
Q 001289 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1107)
Q Consensus 178 ~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~ 257 (1107)
+++==||.|||.||||||++.++.+.++| ...|.-+|..==+|. .+.
T Consensus 94 vvtRFaPsPtG~LHiGharaalln~~~Ar--~~~G~~iLRidDTDp-------------------~R~------------ 140 (560)
T TIGR00463 94 VVMRFAPNPSGPLHIGHARAAILNQYFAK--KYKGKLIIRFDDTDP-------------------RRV------------ 140 (560)
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--hcCCEEEEEeCcCCc-------------------ccc------------
Confidence 56666899999999999999999999997 334554444433332 010
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEee
Q 001289 258 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1107)
Q Consensus 258 ~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 312 (1107)
..+|.+.|.++|+.||+. |+..+++ ..|.....+...+|.++|+.|...
T Consensus 141 --~~e~~~~I~edL~wLGi~--~d~~~~q--Sd~~~~y~~~a~~Li~~G~AY~C~ 189 (560)
T TIGR00463 141 --KPEAYDMILEDLDWLGVK--GDEVVYQ--SDRIEEYYDYCRKLIEMGKAYVCD 189 (560)
T ss_pred --cHHHHHHHHHHHHHcCCC--CCccccc--cccHHHHHHHHHHHHHcCCceeec
Confidence 234678899999999977 5565554 345666788889999999999765
No 89
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=97.50 E-value=0.00031 Score=80.48 Aligned_cols=92 Identities=30% Similarity=0.417 Sum_probs=62.6
Q ss_pred CCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHH
Q 001289 183 PPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDE 262 (1107)
Q Consensus 183 PPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~ 262 (1107)
+|.|||.||||||++.++.-.++| +..|.-+|.+==+|.. |. ..+
T Consensus 7 APsPtG~lHiG~~r~al~n~~~Ar--~~~G~~iLRieDtD~~-------------------R~--------------~~~ 51 (314)
T PF00749_consen 7 APSPTGYLHIGHARTALLNYLFAR--KYGGKFILRIEDTDPE-------------------RC--------------RPE 51 (314)
T ss_dssp ---SSSS-BHHHHHHHHHHHHHHH--HTTSEEEEEEETSSTT-------------------TC--------------HHH
T ss_pred CCCCCCCcccchhHHHHHHHHHHh--ccCceEEEeccccccc-------------------cc--------------hhh
Confidence 699999999999999999999998 5567666665555531 11 234
Q ss_pred HHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEee
Q 001289 263 YGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1107)
Q Consensus 263 ~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 312 (1107)
+.+.|.+.|+.||+..| ...++.+ .+-..-+++..+|.++|++|...
T Consensus 52 ~~~~i~~~L~wlGl~~D-~~~~~QS--~r~~~Y~~~~~~L~~~g~aY~C~ 98 (314)
T PF00749_consen 52 FYDAILEDLRWLGLEWD-YGPYYQS--DRLEIYQEAAEKLIDKGKAYPCF 98 (314)
T ss_dssp HHHHHHHHHHHHT---S-TCEEEGG--GGHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhheeEEEEecC-CeEEeHH--HHHHHHHHHHHHHhhcCCCcccc
Confidence 56789999999996655 2445543 44455677788999999999765
No 90
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.06 Score=62.09 Aligned_cols=163 Identities=17% Similarity=0.242 Sum_probs=98.7
Q ss_pred EEEEcceeeCCCCccccccCCCccCcccccccc---CchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHH
Q 001289 688 KVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGI---SLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRF 764 (1107)
Q Consensus 688 ~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~---~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf 764 (1107)
..+--|+|+..+|+|+-..-|.+|-..|+++.. +.+.|..+=++-.++|.|+..|.+.- .|| ++.|
T Consensus 433 ~HvgFGlVLGeD~KkFkTRsgetVrL~DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~eav---------ayG--ciKY 501 (656)
T KOG4426|consen 433 EHVGFGLVLGEDKKKFKTRSGETVRLLDLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEAV---------AYG--CIKY 501 (656)
T ss_pred eeeeeeeEEccCcccccccccceeeHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHH---------Hhc--chhH
Confidence 445568999999999999999999999998632 45555555566689999998876553 455 4666
Q ss_pred HHHhccCccccccccHHHHHH------------HHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHH-HHHH
Q 001289 765 ALVSYTAQSDKINLDIQRVVG------------YRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWIL-SVLN 831 (1107)
Q Consensus 765 ~L~~~~~~~~Dinf~~~~v~~------------~r~f~nKl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil-~~L~ 831 (1107)
+=++.+.. .|.-|+.+++-. |.+.|.-+.+.-.-.. ++.+.......+ .+...+.|-| ..|-
T Consensus 502 aDL~hnR~-~dY~FSFDkML~DrGnTAvYLLYa~tRIcSI~rksg~d~~-~l~~~lkkT~ki---~LDH~~E~kLg~~lL 576 (656)
T KOG4426|consen 502 ADLSHNRI-TDYIFSFDKMLEDRGNTAVYLLYAYTRICSIARKSGKDNV-DLIKELKKTGKI---ALDHEKEWKLGKHLL 576 (656)
T ss_pred hhhccccc-cceeeeHHHHhhccCcceehhHHHHHHHHHHHHHcCCchh-hHHHHHHhcCcc---ccCCHHHHHHHHHHH
Confidence 64444333 477787776532 2333332222110000 000000000011 2233344544 4566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHHHH
Q 001289 832 KAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIE 867 (1107)
Q Consensus 832 ~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie 867 (1107)
++...+..++++.-++..+..+|+.. ..|..+|-+
T Consensus 577 kf~e~v~~~~~~L~lh~lC~y~y~l~-t~Ft~FY~~ 611 (656)
T KOG4426|consen 577 KFAEIVEKALDSLFLHVLCDYLYELA-TLFTEFYDS 611 (656)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhc
Confidence 77777888888888888888888875 677777743
No 91
>PLN02907 glutamate-tRNA ligase
Probab=97.42 E-value=0.00055 Score=86.14 Aligned_cols=94 Identities=29% Similarity=0.411 Sum_probs=70.9
Q ss_pred EEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHH
Q 001289 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1107)
Q Consensus 178 ~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~ 257 (1107)
+++==||.|||.||||||++.++...++| +..|.-+|..==+|- .|
T Consensus 214 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar--~~~G~~iLR~eDTdp-------------------~r------------- 259 (722)
T PLN02907 214 VCTRFPPEPSGYLHIGHAKAALLNQYFAR--RYKGKLIVRFDDTNP-------------------SK------------- 259 (722)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEecCCCC-------------------Cc-------------
Confidence 66667899999999999999999999998 345666655433332 11
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEE
Q 001289 258 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYR 310 (1107)
Q Consensus 258 ~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr 310 (1107)
-..+|.+.|.++|+-||+ +|+..++++| |-....+...+|.++|+.|.
T Consensus 260 -~~~e~~~~I~~dl~wLG~--~~d~~~~qS~--r~~~y~~~a~~Li~~G~aY~ 307 (722)
T PLN02907 260 -ESDEFVENILKDIETLGI--KYDAVTYTSD--YFPQLMEMAEKLIKEGKAYV 307 (722)
T ss_pred -CChHHHHHHHHHHHHcCC--CCCCcccccc--cHHHHHHHHHHHHHcCCeee
Confidence 124567899999999996 4557666654 44566788899999999996
No 92
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=97.40 E-value=0.00045 Score=83.30 Aligned_cols=93 Identities=26% Similarity=0.354 Sum_probs=65.9
Q ss_pred CCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHH
Q 001289 182 PPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKD 261 (1107)
Q Consensus 182 pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~ 261 (1107)
=||.|||.||||||++.++...++|- ..|.-+|..==+|- .| -..
T Consensus 5 FaPsPtG~LHiG~ar~al~n~~~A~~--~~G~~iLRieDTd~-------------------~r--------------~~~ 49 (522)
T TIGR00440 5 FPPEPNGYLHIGHAKSICLNFGYAKY--YNGTCNLRFDDTNP-------------------VK--------------EDP 49 (522)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEEcCCCc-------------------cc--------------CCh
Confidence 48999999999999999999999984 45666655544443 01 124
Q ss_pred HHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEee
Q 001289 262 EYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1107)
Q Consensus 262 ~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 312 (1107)
+|.+.|.++|+-||+..| ...+++.| |-....+.-.+|.++|+.|...
T Consensus 50 e~~~~I~~dL~wLG~~~d-~~~~~qS~--~~~~~~~~a~~Li~~G~AY~c~ 97 (522)
T TIGR00440 50 EYVESIKRDVEWLGFKWE-GKIRYSSD--YFDELYRYAEELIKKGLAYVDE 97 (522)
T ss_pred HHHHHHHHHHHHcCCCCC-CCceEccc--cHHHHHHHHHHHHHcCCEEeec
Confidence 567899999999996544 34455443 2233344558999999999765
No 93
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=97.40 E-value=0.0004 Score=84.50 Aligned_cols=93 Identities=27% Similarity=0.439 Sum_probs=69.5
Q ss_pred EEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHH
Q 001289 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1107)
Q Consensus 178 ~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~ 257 (1107)
+++==||.|||.||||||.+.++...++|-+ .|.-+|..==+|- ++
T Consensus 53 v~tRFAPsPtGyLHIGharaAllN~l~Ar~~--gG~~iLRiEDTDp-------------------~R------------- 98 (601)
T PTZ00402 53 VVTRFPPEASGFLHIGHAKAALINSMLADKY--KGKLVFRFDDTNP-------------------SK------------- 98 (601)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEEcCCCC-------------------cc-------------
Confidence 5566689999999999999999999999854 5655554433332 11
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCC-ccccCChhhHHHHHHHHHHHHHcCCEE
Q 001289 258 KWKDEYGGTILRQQRRLGASLDWSR-ECFTMDEKRSKAVTEAFVRLYKEGLIY 309 (1107)
Q Consensus 258 ~w~~~~~~~i~~ql~~lG~s~DW~r-~~~T~d~~~~~~v~~~F~~L~~~GlIy 309 (1107)
-..+|.+.|.++|+.||+ +|+. .+++.| |-....++..+|.++|+.|
T Consensus 99 -~~~e~~d~IleDL~WLGl--~wDe~~~~QSd--r~d~y~e~a~~Li~~G~AY 146 (601)
T PTZ00402 99 -EKEHFEQAILDDLATLGV--SWDVGPTYSSD--YMDLMYEKAEELIKKGLAY 146 (601)
T ss_pred -cCHHHHHHHHHHHHHCCC--CCCCceeeccc--cHHHHHHHHHHHHHcCCEE
Confidence 124567899999999996 6765 455543 5566778889999999998
No 94
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.37 E-value=0.00061 Score=74.44 Aligned_cols=92 Identities=23% Similarity=0.264 Sum_probs=66.4
Q ss_pred ECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHH
Q 001289 180 VLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKW 259 (1107)
Q Consensus 180 ~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w 259 (1107)
+==+|.|||.||+||+++.++.-.++|-+ .|.-++.+==+|- +| -
T Consensus 4 ~RFAPsPtG~lHlG~~~~al~~~l~Ar~~--~G~~iLRieDtD~-------------------~R--------------~ 48 (238)
T cd00807 4 TRFPPEPNGYLHIGHAKAILLNFGYAKKY--GGRCNLRFDDTNP-------------------EK--------------E 48 (238)
T ss_pred EecCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEecCCCC-------------------cc--------------c
Confidence 33479999999999999999999999764 4555544333332 11 1
Q ss_pred HHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEE
Q 001289 260 KDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYR 310 (1107)
Q Consensus 260 ~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr 310 (1107)
..++.+.|.++|+.||+. |+..++.. .+.+.-+++..+|.++|++|.
T Consensus 49 ~~~~~~~I~~dL~wlGl~--wD~~~~QS--~r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 49 EEEYVDSIKEDVKWLGIK--PYKVTYAS--DYFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred chHHHHHHHHHHHHcCCC--CCCceecc--cCHHHHHHHHHHHHHcCCeec
Confidence 245667899999999964 55555543 444566788899999999998
No 95
>PLN02859 glutamine-tRNA ligase
Probab=97.34 E-value=0.00063 Score=84.83 Aligned_cols=96 Identities=27% Similarity=0.293 Sum_probs=69.0
Q ss_pred EEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHH
Q 001289 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1107)
Q Consensus 178 ~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~ 257 (1107)
+++==||.|||.||||||++..+...++|.+ .|.-.|..==+|- ++
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar~~--~G~~~LRieDTdp-------------------~r------------- 310 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAKER--GGCCYLRFDDTNP-------------------EA------------- 310 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEecCCCC-------------------Cc-------------
Confidence 5566689999999999999999999999975 5666555444442 11
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEee
Q 001289 258 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1107)
Q Consensus 258 ~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 312 (1107)
-..+|.+.|.++|+-|| ++|+..+++.|- -....+.-.+|.++|+.|...
T Consensus 311 -~~~e~~~~I~edL~WLG--~~~d~~~~qSd~--f~~~Y~~A~~Li~~G~AY~C~ 360 (788)
T PLN02859 311 -EKKEYIDHIEEIVEWMG--WEPFKITYTSDY--FQELYELAVELIRRGHAYVDH 360 (788)
T ss_pred -cchHHHHHHHHHHHHcC--CCCCCcccccHh--HHHHHHHHHHHHHcCCeEecc
Confidence 12457789999999999 567777776542 212223456799999999764
No 96
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=97.32 E-value=0.00063 Score=76.96 Aligned_cols=95 Identities=25% Similarity=0.326 Sum_probs=67.9
Q ss_pred EECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHH
Q 001289 179 IVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWK 258 (1107)
Q Consensus 179 i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~ 258 (1107)
++==+|.|||.|||||+++.++.-.++|-+ .|.-+|.+==+|. +|.
T Consensus 7 ~~RFAPSPTG~LHlG~~rtAL~n~l~Ar~~--~G~~iLRiEDtD~-------------------~R~------------- 52 (299)
T PRK05710 7 IGRFAPSPSGPLHFGSLVAALGSWLDARAH--GGRWLLRIEDIDP-------------------PRE------------- 52 (299)
T ss_pred eEEeCcCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEEECcCCC-------------------Ccc-------------
Confidence 344479999999999999999999988865 3555554433332 111
Q ss_pred HHHHHHHHHHHHHHHhcCccccCC-ccccCChhhHHHHHHHHHHHHHcCCEEEee
Q 001289 259 WKDEYGGTILRQQRRLGASLDWSR-ECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1107)
Q Consensus 259 w~~~~~~~i~~ql~~lG~s~DW~r-~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 312 (1107)
..++.+.|.++|+.||+ ||+. .++.++ +...-.++..+|.++|++|.-.
T Consensus 53 -~~~~~~~I~~dL~wlGl--~wDe~~~~QS~--r~~~Y~~~~~~L~~~G~aY~C~ 102 (299)
T PRK05710 53 -VPGAADAILADLEWLGL--HWDGPVLYQSQ--RHDAYRAALDRLRAQGLVYPCF 102 (299)
T ss_pred -chHHHHHHHHHHHHCCC--CCCCCceEeec--cHHHHHHHHHHHHHCCCceecC
Confidence 23466889999999995 5654 555443 4456678888999999999654
No 97
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=97.32 E-value=0.00061 Score=82.38 Aligned_cols=97 Identities=27% Similarity=0.299 Sum_probs=67.7
Q ss_pred EEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHH
Q 001289 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1107)
Q Consensus 178 ~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~ 257 (1107)
+++==||.|||.||||||++.++...++|-+ .|.-+|..==+|.. +
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~--~G~~iLRieDTd~~-------------------r------------- 75 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQDY--GGKCNLRFDDTNPE-------------------K------------- 75 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEECCCCCC-------------------c-------------
Confidence 5566689999999999999999999999853 56665554444421 1
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEee
Q 001289 258 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1107)
Q Consensus 258 ~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 312 (1107)
-..+|.+.|.++|+.||+..| ...+++++ |-....+.-.+|.++|++|...
T Consensus 76 -~~~e~~~~I~~dL~wLGi~~d-~~~~~qS~--r~~~~y~~a~~Li~~G~AY~c~ 126 (554)
T PRK05347 76 -EDQEYVDSIKEDVRWLGFDWS-GELRYASD--YFDQLYEYAVELIKKGKAYVDD 126 (554)
T ss_pred -CChHHHHHHHHHHHHcCCCCC-CCceeeec--CHHHHHHHHHHHHHcCCEeeCC
Confidence 124567899999999997554 34555544 2222334446999999999764
No 98
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.00072 Score=80.92 Aligned_cols=96 Identities=30% Similarity=0.365 Sum_probs=71.1
Q ss_pred EEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHH
Q 001289 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1107)
Q Consensus 178 ~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~ 257 (1107)
|++==+|.|||.||||||++.++...++|.+ .|.-++.+==||- .|.
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~--~G~fiLRiEDTD~-------------------~R~------------ 56 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKY--GGKFILRIEDTDP-------------------ERE------------ 56 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHh--CCEEEEEecCCCC-------------------CCC------------
Confidence 6666689999999999999999999999875 4666666544443 111
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCCc-cccCChhhHHHHHHHHHHHHHcCCEEEee
Q 001289 258 KWKDEYGGTILRQQRRLGASLDWSRE-CFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1107)
Q Consensus 258 ~w~~~~~~~i~~ql~~lG~s~DW~r~-~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 312 (1107)
..++.+.|.++|+-|| ++|+.. ++.+ ++-..-.+.-.+|.++|+.|...
T Consensus 57 --~~e~~~~I~~~L~WLG--l~wde~~~~QS--~r~~~Y~~~~~~Li~~G~AY~c~ 106 (472)
T COG0008 57 --TPEAEDAILEDLEWLG--LDWDEGPYYQS--ERFDIYYEYAEKLIEKGKAYVCY 106 (472)
T ss_pred --CHHHHHHHHHHHHhcC--CCCCCceeehh--hhHHHHHHHHHHHHHCCCeEEec
Confidence 2356689999999999 566673 5543 34445566778999999999764
No 99
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.27 E-value=0.0008 Score=81.02 Aligned_cols=94 Identities=29% Similarity=0.381 Sum_probs=70.3
Q ss_pred ECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHH
Q 001289 180 VLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKW 259 (1107)
Q Consensus 180 ~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w 259 (1107)
+==.|.|||.||||||++.++.-.++| +..|.-+|.+==+|. +| -
T Consensus 7 tRFAPSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLRIEDTD~-------------------~R--------------~ 51 (513)
T PRK14895 7 TRFAPSPTGFLHIGSARTALFNYLFAR--HHNGKFLLRIEDTDK-------------------ER--------------S 51 (513)
T ss_pred EeeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECCCCc-------------------cc--------------c
Confidence 444799999999999999999999999 457777776655553 01 1
Q ss_pred HHHHHHHHHHHHHHhcCccccC-CccccCChhhHHHHHHHHHHHHHcCCEEEee
Q 001289 260 KDEYGGTILRQQRRLGASLDWS-RECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1107)
Q Consensus 260 ~~~~~~~i~~ql~~lG~s~DW~-r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 312 (1107)
..++.+.|.+.|+.||+ ||+ .+|+.++ +...-.++..+|.++|+.|+..
T Consensus 52 ~~~~~~~i~~~L~WLGl--~wDe~py~QSe--R~~~Y~~~a~~Li~~G~AY~Cf 101 (513)
T PRK14895 52 TKEAVEAIFSGLKWLGL--DWNGEVIFQSK--RNNLYKEAALKLLQNGKAYYCF 101 (513)
T ss_pred ChHHHHHHHHHHHHcCC--CCCCCceeEeC--cHHHHHHHHHHHHHcCCeEEec
Confidence 24566789999999995 565 4566544 2345677888999999999764
No 100
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=97.25 E-value=0.0008 Score=80.03 Aligned_cols=94 Identities=29% Similarity=0.335 Sum_probs=68.0
Q ss_pred ECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHH
Q 001289 180 VLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKW 259 (1107)
Q Consensus 180 ~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w 259 (1107)
+==+|.|||.||||||++.+..-.++|-+ .|.-+|.+==+|. + .-
T Consensus 5 ~RFAPSPTG~lHiG~artAL~n~l~Ar~~--gG~fiLRIEDTD~---------~------------------------Rs 49 (445)
T PRK12558 5 TRFAPSPTGYLHVGNARTALLNWLYARKH--GGKFILRIDDTDL---------E------------------------RS 49 (445)
T ss_pred EEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEeccCCc---------c------------------------cc
Confidence 33479999999999999999888888754 4666665555552 0 01
Q ss_pred HHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEee
Q 001289 260 KDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1107)
Q Consensus 260 ~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 312 (1107)
.+++.+.|.+.|+.||+.+| ..|+ ...+...+.++..+|.++|++|+..
T Consensus 50 ~~~~~~~I~e~L~wLGI~~D--e~y~--QSer~~~y~~~~e~L~e~G~AY~C~ 98 (445)
T PRK12558 50 KQEYADAIAEDLKWLGINWD--RTFR--QSDRFDRYDEAAEKLKAAGRLYPCY 98 (445)
T ss_pred hHHHHHHHHHHHHHcCCCCC--cccc--HHHHHHHHHHHHHHHHHCCCEEEec
Confidence 24566789999999998776 3332 2233357889999999999999764
No 101
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=97.23 E-value=0.00084 Score=79.54 Aligned_cols=91 Identities=16% Similarity=0.262 Sum_probs=68.3
Q ss_pred CCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHH
Q 001289 183 PPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDE 262 (1107)
Q Consensus 183 PPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~ 262 (1107)
.|.|||.||||||++.++.-.++|-+ .|.-+|.+==+|.. | -..+
T Consensus 5 APSPTG~LHiG~artAL~n~l~Ar~~--gG~fiLRiEDTD~~-------------------R--------------~~~e 49 (433)
T PRK12410 5 APSPTGDMHIGNLRAAIFNYIVAKQQ--NEDFLIRIEDTDKE-------------------R--------------NIEG 49 (433)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEEeCcCCCC-------------------c--------------CChH
Confidence 69999999999999999999998854 57666666555541 1 1245
Q ss_pred HHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEee
Q 001289 263 YGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1107)
Q Consensus 263 ~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 312 (1107)
+.+.|.+.|+.||+ ||+..|+.++. -..-.++..+|.++|.+|+..
T Consensus 50 ~~~~I~~~L~WlGl--~wDe~y~QSeR--~~~Y~~~a~~Li~~G~AY~C~ 95 (433)
T PRK12410 50 KDKEILEILNLFGI--SWDKLVYQSEN--LKFHRQMAEKLLSEKKAFACF 95 (433)
T ss_pred HHHHHHHHHHHcCC--CCCCCeehhcc--HHHHHHHHHHHHHcCCeeeec
Confidence 66789999999996 55577766542 345567888999999999764
No 102
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=97.16 E-value=0.00084 Score=84.46 Aligned_cols=96 Identities=27% Similarity=0.290 Sum_probs=69.6
Q ss_pred EEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHH
Q 001289 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1107)
Q Consensus 178 ~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~ 257 (1107)
+++==||.|||.||||||++.++...++|-+ .|.-.|..==+|- .+
T Consensus 32 v~tRFaPsPtG~lHiGhar~alln~~~A~~~--~G~~~LR~eDTd~-------------------~r------------- 77 (771)
T PRK14703 32 VVTRFPPEPNGYLHIGHAKSILLNFGIARDY--GGRCHLRMDDTNP-------------------ET------------- 77 (771)
T ss_pred eEEEeCcCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEeCCCCC-------------------Cc-------------
Confidence 6677789999999999999999999999753 4655554433332 11
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCC-ccccCChhhHHHHHHHHHHHHHcCCEEEee
Q 001289 258 KWKDEYGGTILRQQRRLGASLDWSR-ECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1107)
Q Consensus 258 ~w~~~~~~~i~~ql~~lG~s~DW~r-~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 312 (1107)
-..+|.+.|.++|+-||+..| . .++++ .|-....+...+|.++|++|...
T Consensus 78 -~~~e~~~~I~~dl~wLG~~wd--~~~~~qS--~~~~~y~~~a~~Li~~G~aY~c~ 128 (771)
T PRK14703 78 -EDTEYVEAIKDDVRWLGFDWG--EHLYYAS--DYFERMYAYAEQLIKMGLAYVDS 128 (771)
T ss_pred -CChHHHHHHHHHHHHcCCCCC--CCceEee--cCHHHHHHHHHHHHHcCCcccCc
Confidence 124567899999999996544 4 35543 45556677888999999999754
No 103
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=97.07 E-value=0.0018 Score=70.65 Aligned_cols=86 Identities=31% Similarity=0.383 Sum_probs=62.9
Q ss_pred CCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHH
Q 001289 182 PPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKD 261 (1107)
Q Consensus 182 pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~ 261 (1107)
=+|.|||.||+||+++.++.-.++|-+ .|.-++.+==+|. .| -..
T Consensus 6 FAPsPtG~lHlG~~r~al~n~l~Ar~~--~G~~iLRieDtD~-------------------~R--------------~~~ 50 (230)
T cd00418 6 FAPSPTGYLHIGHARTALFNFAFARKY--GGKFILRIEDTDP-------------------ER--------------SRP 50 (230)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHHc--CCeEEEEeCcCCC-------------------CC--------------CCh
Confidence 379999999999999999999999865 5666655544443 11 124
Q ss_pred HHHHHHHHHHHHhcCccccCC-ccccCChhhHHHHHHHHHHHHHcC
Q 001289 262 EYGGTILRQQRRLGASLDWSR-ECFTMDEKRSKAVTEAFVRLYKEG 306 (1107)
Q Consensus 262 ~~~~~i~~ql~~lG~s~DW~r-~~~T~d~~~~~~v~~~F~~L~~~G 306 (1107)
++.+.|.++|+.||+ +|+. .++.. .+-..-+++..+|.++|
T Consensus 51 ~~~~~I~~dL~wlGl--~wd~~~~~QS--~r~~~y~~~~~~L~~~g 92 (230)
T cd00418 51 EYVESILEDLKWLGL--DWDEGPYRQS--DRFDLYRAYAEELIKKG 92 (230)
T ss_pred HHHHHHHHHHHHcCC--CCCCCeeehh--cCHHHHHHHHHHHHHcC
Confidence 567899999999996 5556 55543 34455667888999999
No 104
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=97.05 E-value=0.0017 Score=78.46 Aligned_cols=92 Identities=28% Similarity=0.361 Sum_probs=66.6
Q ss_pred CCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHH
Q 001289 182 PPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKD 261 (1107)
Q Consensus 182 pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~ 261 (1107)
=+|.|||.||||||++.++.-.++|- ..|.-+|.+==+|. .| -..
T Consensus 6 fAPsPtG~lHiG~~rtal~n~l~Ar~--~~G~~iLRieDtD~-------------------~R--------------~~~ 50 (470)
T TIGR00464 6 FAPSPTGYLHIGGARTALFNYLFAKH--TGGEFILRIEDTDL-------------------ER--------------NIE 50 (470)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCCC-------------------cc--------------CCh
Confidence 47999999999999999999999984 34666655544443 01 123
Q ss_pred HHHHHHHHHHHHhcCccccC-CccccCChhhHHHHHHHHHHHHHcCCEEEee
Q 001289 262 EYGGTILRQQRRLGASLDWS-RECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1107)
Q Consensus 262 ~~~~~i~~ql~~lG~s~DW~-r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 312 (1107)
++.+.|.+.|+.||+ +|+ .+|+.++ +...-.++..+|.++|++|+..
T Consensus 51 ~~~~~i~~~L~wlGl--~~de~~~~QS~--r~~~y~~~~~~L~~~g~aY~C~ 98 (470)
T TIGR00464 51 EAEEAILEGLKWLGI--SWDEGPYYQSQ--RLDIYKKYAKELLEEGLAYRCY 98 (470)
T ss_pred HHHHHHHHHHHHCCC--CCCCCeeehhC--CHHHHHHHHHHHHHcCCEEecC
Confidence 466789999999995 566 4555544 2344567778999999999764
No 105
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.03 E-value=0.0021 Score=70.64 Aligned_cols=86 Identities=28% Similarity=0.346 Sum_probs=60.3
Q ss_pred CCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHH
Q 001289 182 PPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKD 261 (1107)
Q Consensus 182 pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~ 261 (1107)
=+|.|||.|||||+++.++.-.++|- ..|.-.+.+==+|. .|. ..
T Consensus 6 fAPsPtG~LHlG~~~~al~n~l~ar~--~~G~~ilRieDtd~-------------------~r~--------------~~ 50 (239)
T cd00808 6 FAPSPTGFLHIGGARTALFNYLFARK--HGGKFILRIEDTDQ-------------------ERS--------------VP 50 (239)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHH--cCCeEEEEECcCCC-------------------CCC--------------ch
Confidence 37999999999999999999998884 35544433333332 110 23
Q ss_pred HHHHHHHHHHHHhcCccccCC---------ccccCChhhHHHHHHHHHHHHHcC
Q 001289 262 EYGGTILRQQRRLGASLDWSR---------ECFTMDEKRSKAVTEAFVRLYKEG 306 (1107)
Q Consensus 262 ~~~~~i~~ql~~lG~s~DW~r---------~~~T~d~~~~~~v~~~F~~L~~~G 306 (1107)
++.+.|.++|..||+ ||+. .++..+ +.....++..+|.++|
T Consensus 51 ~~~~~i~~dL~wlGl--~~d~~~~~~g~~~~~~QS~--r~~~y~~~~~~L~~~g 100 (239)
T cd00808 51 EAEEAILEALKWLGL--DWDEGPDVGGPYGPYRQSE--RLEIYRKYAEKLLEKG 100 (239)
T ss_pred HHHHHHHHHHHHcCC--CCCcCCccCCCCCCEeeeC--CHHHHHHHHHHHHHcC
Confidence 456788999999995 6666 555554 4455667788899888
No 106
>PLN02627 glutamyl-tRNA synthetase
Probab=96.93 E-value=0.0026 Score=76.81 Aligned_cols=96 Identities=28% Similarity=0.377 Sum_probs=69.7
Q ss_pred EEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHH
Q 001289 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1107)
Q Consensus 178 ~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~ 257 (1107)
+++==+|.|||.||||||++.++.-.++| +..|.-+|.+==+|.. |
T Consensus 46 vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar--~~gG~fiLRIEDTD~~-------------------R------------- 91 (535)
T PLN02627 46 VRVRFAPSPTGNLHVGGARTALFNYLFAR--SKGGKFVLRIEDTDLA-------------------R------------- 91 (535)
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCCC-------------------C-------------
Confidence 44445689999999999999999999999 4567777666555531 1
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCCc---------cccCChhhHHHHHHHHHHHHHcCCEEEee
Q 001289 258 KWKDEYGGTILRQQRRLGASLDWSRE---------CFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1107)
Q Consensus 258 ~w~~~~~~~i~~ql~~lG~s~DW~r~---------~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 312 (1107)
-+.++.+.|.+.|+.||+ ||+.. |+-++ +...-.++..+|.++|++|+..
T Consensus 92 -~~~e~~~~I~~~L~WLGl--~wDegp~~gg~~gpy~QSe--R~~~Y~~~a~~Li~~G~AY~Cf 150 (535)
T PLN02627 92 -STKESEEAVLRDLKWLGL--DWDEGPDVGGEYGPYRQSE--RNAIYKQYAEKLLESGHVYPCF 150 (535)
T ss_pred -CChHHHHHHHHHHHHcCC--CCCcCcccCCCCCCeeeec--cHHHHHHHHHHHHHcCCeeecc
Confidence 124566889999999995 66653 44332 2345567788999999999764
No 107
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=95.86 E-value=0.26 Score=50.72 Aligned_cols=139 Identities=18% Similarity=0.226 Sum_probs=82.3
Q ss_pred CCCchHHHHHHHhccCccccccccHHHHHHHH--------HHHHHHHHHHHHHhhhhCCCCCCCCCCCCC-CCChhhHHH
Q 001289 756 ECGTDALRFALVSYTAQSDKINLDIQRVVGYR--------QWCNKLWNAVRFSMSKLGEGFVPPLKLHPH-NLPFSCKWI 826 (1107)
Q Consensus 756 ~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r--------~f~nKl~N~~rf~l~~l~~~~~p~~~~~~~-~~~~~D~wi 826 (1107)
..|.||+||++++.... .++.||++.+.... .-..++.|.++-. .....+....+.. -....++-+
T Consensus 2 ~i~~~a~~~~~l~~~~~-~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~----~~~~~~~~~~~~~ll~~~~E~~L 76 (156)
T cd07956 2 EVGVGAVKYQDLSNKRI-KDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKA----GETIEAEADADLSLLPEPDERDL 76 (156)
T ss_pred ccchhHHHHHHHhcCCC-CCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhC----CCcCccccccchhhcCCHHHHHH
Confidence 57899999999986654 59999998854311 1112223332211 1100000011111 123456667
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHh
Q 001289 827 LSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLH 903 (1107)
Q Consensus 827 l~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~ 903 (1107)
+..+..+...+..++.+.+++.++..++++. ..+.++| +.+ +.+ +++.+....|......+..++..++.+|.
T Consensus 77 ~~~l~~~~~~i~~~~~~~~~~~l~~~l~~L~-~~~~~ff-d~v-~V~-~~~~~i~~nRL~Ll~~v~~vl~~~l~llg 149 (156)
T cd07956 77 ILLLAKFPEVVKNAAETLEPHTIATYLFDLA-HAFSKFY-NAC-PVL-GAEEELRNARLALVAAARQVLANGLDLLG 149 (156)
T ss_pred HHHHHHhHHHHHHHHHHcCcHHHHHHHHHHH-HHHHHHH-hcC-ccc-CCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888888888999999999999999999985 4555544 543 222 23333222444555566667777777764
No 108
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=95.07 E-value=0.033 Score=62.67 Aligned_cols=58 Identities=26% Similarity=0.214 Sum_probs=40.3
Q ss_pred cCcccccccccch-HHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCcccccc
Q 001289 656 TSVLETGHDILFF-WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVIN 718 (1107)
Q Consensus 656 ~dl~~tG~Dil~f-W~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~ 718 (1107)
.++...|.||... =.+|-++--+ ....| -.+.|.++.+.+|+|||||.||.++ ..+.+
T Consensus 152 ~~l~~~G~DQ~~~i~~~rd~a~r~--~~~~~--~~l~~~ll~~l~G~KMSKS~~~~~~-i~l~d 210 (269)
T cd00805 152 VDLQLGGSDQRGNITLGRDLIRKL--GYKKV--VGLTTPLLTGLDGGKMSKSEGNAIW-DPVLD 210 (269)
T ss_pred CCeeEecHHHHHHHHHHHHHHHHh--CCCCc--EEEeeccccCCCCCcccCCCCCccc-ccCCC
Confidence 4788889999643 2233333222 22334 4578999999999999999999997 55554
No 109
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.89 E-value=0.063 Score=63.57 Aligned_cols=98 Identities=29% Similarity=0.402 Sum_probs=69.2
Q ss_pred EEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHH
Q 001289 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1107)
Q Consensus 178 ~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~ 257 (1107)
+++-=||-|+|.||||||-...+- -|.... |+=-.+.-||..--+
T Consensus 201 Vv~RFPPEpSGyLHIGHAKAALLN----qYfa~~-~~G~LIvRFDDTNPa------------------------------ 245 (712)
T KOG1147|consen 201 VVTRFPPEPSGYLHIGHAKAALLN----QYFAQA-YQGKLIVRFDDTNPA------------------------------ 245 (712)
T ss_pred eEEecCCCCCceeehhhHHHHHHH----HHHHHh-cCceEEEEecCCCcc------------------------------
Confidence 455558999999999999876553 333322 222344556664321
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEeeee
Q 001289 258 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRL 314 (1107)
Q Consensus 258 ~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~ 314 (1107)
+=.+++.+.|.+++..|||-.| .+|...+|-..+...=++|.++|..|-+..|
T Consensus 246 KE~~eFe~~IleDl~~LgIkpd----~~TyTSDyF~~i~dycv~likeGKAYvDDTp 298 (712)
T KOG1147|consen 246 KENEEFEDVILEDLSLLGIKPD----RVTYTSDYFDEIMDYCVKLIKEGKAYVDDTP 298 (712)
T ss_pred hhhHHHHHHHHHHHHHhCcCcc----eeeechhhHHHHHHHHHHHHhcCcccccCCc
Confidence 1134567899999999999998 4566667778888888999999999988754
No 110
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=94.89 E-value=0.049 Score=61.38 Aligned_cols=61 Identities=15% Similarity=0.081 Sum_probs=41.4
Q ss_pred CCcCcccccccccc-hHHHHHHHHHHHhcC-CCCccEEEEcceeeCCCCccccccCCCccCcccccc
Q 001289 654 YPTSVLETGHDILF-FWVARMVMLGIKLGG-EVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVIN 718 (1107)
Q Consensus 654 yP~dl~~tG~Dil~-fW~armi~~~~~l~g-~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~ 718 (1107)
+..++...|.||.. +=.+|-++-- +.+ ..| ..+++.++.+.+|.|||||.||.|+...+.+
T Consensus 152 ~~~~~vp~G~DQ~~~i~l~rdla~r--~n~~~~p--~~l~~p~l~~l~G~KMSKS~~~~i~l~~~~d 214 (273)
T cd00395 152 EGCDIQPGGSDQWGNITLGRELARR--FNGFTIA--EGLTIPLVTKLDGPKFGKSESGPKWLDTEKT 214 (273)
T ss_pred cCCcEEEecHHHHHHHHHHHHHHHH--hCCCCCC--eEEeeccccCCCCCcCCCCCCCCccccccCC
Confidence 34578888999964 2333444322 222 234 4566799999999999999999987665554
No 111
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=94.51 E-value=0.032 Score=66.37 Aligned_cols=59 Identities=27% Similarity=0.181 Sum_probs=41.6
Q ss_pred CCcCcccccccccchHH-HHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCcccc
Q 001289 654 YPTSVLETGHDILFFWV-ARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEV 716 (1107)
Q Consensus 654 yP~dl~~tG~Dil~fW~-armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dv 716 (1107)
|.+++...|.||..... .|-++ -.+.+..| -.+++.++.+.+|.|||||.||.|+..|=
T Consensus 185 ~~~~iq~gG~DQ~~ni~~grdl~--~r~~~~~~--~~lt~PlL~g~dG~KMsKS~~naI~L~d~ 244 (410)
T PRK13354 185 EDVDLQIGGTDQWGNILMGRDLQ--RKLEGEEQ--FGLTMPLLEGADGTKMGKSAGGAIWLDPE 244 (410)
T ss_pred CCCCEEEecHHHHHHHHHHHHHH--HHhCCCCc--eEeccCCccCCCCCccCCCCCCceeccCC
Confidence 46788889999964322 22222 22334445 46678899999999999999999987765
No 112
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=93.83 E-value=0.047 Score=64.95 Aligned_cols=59 Identities=27% Similarity=0.316 Sum_probs=42.3
Q ss_pred CCcCcccccccccchHH-HHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCcccc
Q 001289 654 YPTSVLETGHDILFFWV-ARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEV 716 (1107)
Q Consensus 654 yP~dl~~tG~Dil~fW~-armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dv 716 (1107)
|.+++...|.||..... +|-++- .+..+.+| .++..++.+.+|+|||||.||.|+..|-
T Consensus 187 ~~~~i~~gG~DQ~~ni~~grdla~--r~~~~~~~--~l~~plL~~~~G~KMsKS~~naI~L~d~ 246 (408)
T PRK05912 187 YGCDLQLGGSDQWGNILSGRDLQR--RYGGKPQF--GLTMPLLTGLDGKKMGKSEGNAVWLDEE 246 (408)
T ss_pred CCCCEEeccHHHHHHHHHHHHHHH--HhCCCCeE--EEecCCcCCCCCCcccCCCCCceeCCCC
Confidence 57889999999975332 243432 23333344 3578888899999999999999988774
No 113
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=92.88 E-value=0.1 Score=52.71 Aligned_cols=50 Identities=28% Similarity=0.173 Sum_probs=34.7
Q ss_pred cCcccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccC
Q 001289 656 TSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSL 707 (1107)
Q Consensus 656 ~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSl 707 (1107)
.++++.|.|+.+ ++.....+.-.+.+..+ ...+.+|++...+|+|||||+
T Consensus 94 ~~i~~~G~Dq~~-h~~~~~~i~~~~~~~~~-p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 94 CDIHLGGSDQLG-HIELGLELLKKAGGPAR-PFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred cEEEEechhHHH-HHHHHHHHHHHhCCCCC-ceEEEeCCeECCCCCcCCCCC
Confidence 578889999986 44444333334434322 466778999988899999995
No 114
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=92.87 E-value=0.36 Score=54.92 Aligned_cols=62 Identities=23% Similarity=0.142 Sum_probs=40.6
Q ss_pred CcCcccccccccch-HHHHHHHHHHHhcCCCCccEEEEcceeeCCCCc-cccccCCC-ccCcccc
Q 001289 655 PTSVLETGHDILFF-WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGR-KMSKSLGN-VIDPLEV 716 (1107)
Q Consensus 655 P~dl~~tG~Dil~f-W~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~-KMSKSlGN-vIdP~dv 716 (1107)
-.++...|.||... =.+|-++-.+......|-...+++.++.+.+|. |||||.+| .|+..|-
T Consensus 149 ~~~~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~~l~G~~KMSKS~~ns~I~L~d~ 213 (292)
T PF00579_consen 149 KADLVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPLLPGLDGQKKMSKSDPNSAIFLDDS 213 (292)
T ss_dssp THSEEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETCBBSTTSSSBTTTTTTGGS-BTTTT
T ss_pred ccccccccchHHHHHHHHHHHHhhhcccccccCchheeeccccccCCccccCccCCccEEEEecc
Confidence 34688889999753 344544433332222333578888899999999 99999999 6655443
No 115
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=92.77 E-value=0.4 Score=52.65 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.9
Q ss_pred EEEEcceeeCCCCccccccCCC
Q 001289 688 KVYLHPMIRDAHGRKMSKSLGN 709 (1107)
Q Consensus 688 ~V~~Hg~v~D~~G~KMSKSlGN 709 (1107)
...-++++.|.+|+|||||.|+
T Consensus 139 ~~~H~pll~~~~g~KLSKr~~~ 160 (230)
T cd00418 139 RFYHFPRLLLEDGTKLSKRKLN 160 (230)
T ss_pred eEEEeeeeeCCCCCCccCcCCC
Confidence 6677799999999999999998
No 116
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=92.63 E-value=0.11 Score=60.15 Aligned_cols=59 Identities=31% Similarity=0.394 Sum_probs=39.2
Q ss_pred CCcCcccccccccc-hHHHHHHHHHHHh-cC---CCCccEEE--EcceeeCCCCccccccCCCccCc
Q 001289 654 YPTSVLETGHDILF-FWVARMVMLGIKL-GG---EVPFTKVY--LHPMIRDAHGRKMSKSLGNVIDP 713 (1107)
Q Consensus 654 yP~dl~~tG~Dil~-fW~armi~~~~~l-~g---~~PFk~V~--~Hg~v~D~~G~KMSKSlGNvIdP 713 (1107)
|..++...|.||.. +=++|-++-.+.. .| ..| ..++ .|.++.+.+|+|||||.+|.|..
T Consensus 148 ~~~d~VpvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P-~~~~~~~~~~l~gLdg~KMSKS~~n~I~L 213 (332)
T PRK12556 148 FQATHVPVGKDQIQHIEIARDIATYFNHTFGDTFTLP-EYVIQEEGAILPGLDGRKMSKSYGNVIPL 213 (332)
T ss_pred ccCCEEEeccccHHHHHHHHHHHHHHHHhccccCCCc-eeccccccccccCCCCCCCCCCCCCcccc
Confidence 45677778999974 5667777644321 12 224 2232 37777788999999999998754
No 117
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.97 E-value=0.4 Score=57.63 Aligned_cols=97 Identities=27% Similarity=0.295 Sum_probs=61.3
Q ss_pred EEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHH
Q 001289 177 FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEV 256 (1107)
Q Consensus 177 f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~ 256 (1107)
-+.+-=||-|||.||||||-..-+-==+++++ .|..-|. +|.. .+|
T Consensus 248 kV~TRFPPEPNG~LHIGHaKAInvNFgyAk~~--~G~cyLR---fDDT-----------------------NPE------ 293 (764)
T KOG1148|consen 248 KVVTRFPPEPNGILHIGHAKAINVNFGYAKAH--GGVCYLR---FDDT-----------------------NPE------ 293 (764)
T ss_pred eeEEeCCCCCCceeeecchhheeechhhhhhh--CCeEEEe---cCCC-----------------------Ccc------
Confidence 35666789999999999986544333334432 2333221 2221 111
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEee
Q 001289 257 WKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1107)
Q Consensus 257 ~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 312 (1107)
.=.++|-..|++...-|| |.-.-.|.+.+|-....+.=+.|.++|+.|-..
T Consensus 294 -kEee~yf~sI~e~V~WLG----~~P~kvTysSDyFdqLy~~av~LIrkG~AYVcH 344 (764)
T KOG1148|consen 294 -KEEEEYFESIKEMVAWLG----FEPYKVTYSSDYFDQLYELAVELIRKGKAYVCH 344 (764)
T ss_pred -hhhHHHHHHHHHHHHHhC----CCceeeecchhHHHHHHHHHHHHHhcCceeEEe
Confidence 112456677777777777 456677888887777777777899999988654
No 118
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.92 E-value=2.2 Score=50.94 Aligned_cols=153 Identities=19% Similarity=0.305 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhcCCcccCCCCCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeec-------------
Q 001289 152 VEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWV------------- 218 (1107)
Q Consensus 152 vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~------------- 218 (1107)
++.-....|++...|....-...++-+|-..-||.+-..|+||.++.+|.-.++.-++-.|+.|.-+
T Consensus 87 ~k~~l~~i~~~~~~~g~~~~~~~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFgll 166 (567)
T KOG1195|consen 87 IKSVLPIIEEQREKYGKNELGSGKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFGLL 166 (567)
T ss_pred HHHHHHHHHHHhcccCccccccCceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhhHH
Confidence 4555566677766666543223467888899999999999999999999999999999999999763
Q ss_pred -cCCCccCh-------hHHHHHHHHHHH----HhCCCccccChHHHH-------H--HHHH-HHHHHHHHHHHHHHHhcC
Q 001289 219 -PGMDHAGI-------ATQVVVEKKLMR----ERKLTRHDIGREQFV-------S--EVWK-WKDEYGGTILRQQRRLGA 276 (1107)
Q Consensus 219 -~G~D~~Gi-------~~q~~vEk~l~~----~~g~~~~d~~re~f~-------~--~~~~-w~~~~~~~i~~ql~~lG~ 276 (1107)
-||--.|- ||+...+..+.. +......+.-|+-|- + +.|+ +.+-.+....+...|||+
T Consensus 167 ~~g~~~~g~e~~L~~~pI~hL~dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v 246 (567)
T KOG1195|consen 167 ALGFQLYGDEEELQLNPIKHLFDVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLNV 246 (567)
T ss_pred hccHHhhCchhhhccchHHHHHHHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhce
Confidence 24444443 343322222211 111111111222221 1 1233 556667777788899999
Q ss_pred ccc-cCCccccCChhhHHHHHHHHHHHHHcCCE
Q 001289 277 SLD-WSRECFTMDEKRSKAVTEAFVRLYKEGLI 308 (1107)
Q Consensus 277 s~D-W~r~~~T~d~~~~~~v~~~F~~L~~~GlI 308 (1107)
-|| |+-+ +.-+.+..+.+...+...||+
T Consensus 247 ~FD~y~gE----Sqv~~e~~~~~~d~~rs~~l~ 275 (567)
T KOG1195|consen 247 KFDEYSGE----SQVSNEKMQEALDLLRSANLT 275 (567)
T ss_pred eeeeccch----HHHHHHHHHHHHHHHHhcCCc
Confidence 999 4432 335666777777777777754
No 119
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=91.23 E-value=0.16 Score=60.32 Aligned_cols=60 Identities=27% Similarity=0.325 Sum_probs=39.4
Q ss_pred CCcCcccccccccc-hHHHHHHHHHHHh-cC----CCCccEEEE--cceeeCCCCccccccCCCccCcc
Q 001289 654 YPTSVLETGHDILF-FWVARMVMLGIKL-GG----EVPFTKVYL--HPMIRDAHGRKMSKSLGNVIDPL 714 (1107)
Q Consensus 654 yP~dl~~tG~Dil~-fW~armi~~~~~l-~g----~~PFk~V~~--Hg~v~D~~G~KMSKSlGNvIdP~ 714 (1107)
|-+++...|.||.. .=++|-++..+.. .| .+| ..++. +..|.+.+|+|||||.||.|...
T Consensus 147 y~ad~VPVG~DQ~qHlELaRdIA~rFN~~yg~~~F~~P-e~~i~~~~~~I~gLdg~KMSKS~~n~I~L~ 214 (431)
T PRK12284 147 FNAHKVPVGRDQIQHIEMARDIAQRFNHLYGGEFFVLP-EAVIEESVATLPGLDGRKMSKSYDNTIPLF 214 (431)
T ss_pred cCCCEEEEcchhHHHHHHHHHHHHHHhhhcCCcccCCC-ccccccccccccCCCCccccCCCCCEeeec
Confidence 44666777999973 5667777654321 22 134 23332 46788889999999999998544
No 120
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=90.92 E-value=0.17 Score=58.59 Aligned_cols=59 Identities=29% Similarity=0.312 Sum_probs=42.4
Q ss_pred CCcCcccccccccc-hHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCc--cccccC-CCccCcccc
Q 001289 654 YPTSVLETGHDILF-FWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGR--KMSKSL-GNVIDPLEV 716 (1107)
Q Consensus 654 yP~dl~~tG~Dil~-fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~--KMSKSl-GNvIdP~dv 716 (1107)
|.+|+...|.||.. +=++|-++-. +....| .++.|.++.+.+|. |||||. ||.|...|=
T Consensus 167 ~~ad~vpvG~DQ~~h~~l~Rdia~~--~n~~~p--~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~D~ 229 (329)
T PRK08560 167 LDVDIAVGGMDQRKIHMLAREVLPK--LGYKKP--VCIHTPLLTGLDGGGIKMSKSKPGSAIFVHDS 229 (329)
T ss_pred hCCCEEEechhHHHHHHHHHHhhHh--cCCCCc--eEEEcCccCCCCCCCCCCcCCCCCCeecccCC
Confidence 45778888999974 4455555433 223345 56679999999998 999999 999976543
No 121
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=90.23 E-value=0.36 Score=56.81 Aligned_cols=25 Identities=40% Similarity=0.442 Sum_probs=21.1
Q ss_pred EcceeeCCCCccccccCCCccCccc
Q 001289 691 LHPMIRDAHGRKMSKSLGNVIDPLE 715 (1107)
Q Consensus 691 ~Hg~v~D~~G~KMSKSlGNvIdP~d 715 (1107)
.|..|.+.+|+|||||.||.|...|
T Consensus 253 ~~~~I~gLdg~KMSKS~~n~I~L~D 277 (398)
T PRK12283 253 EASKMPGLDGQKMSKSYGNTIGLRE 277 (398)
T ss_pred CCCcccCCCCCcCCCCCCCeeeCcC
Confidence 3788889999999999999887554
No 122
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=89.93 E-value=0.25 Score=62.99 Aligned_cols=82 Identities=26% Similarity=0.326 Sum_probs=63.5
Q ss_pred HHHHHHHHHcCCeeceec--------------cccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceE-
Q 001289 478 EAVNEALKKKGLYRGAKD--------------NEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLE- 542 (1107)
Q Consensus 478 ~~vi~~L~~~gl~~~~~~--------------~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~- 542 (1107)
+-+.-.|.++||+...+. +.-....|||||.+|++.--+|||++..+.++++++.+ ..+.
T Consensus 138 QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l-----~~l~~ 212 (814)
T COG0495 138 QWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDL-----DKLAT 212 (814)
T ss_pred HHHHHHHHHCCCEEeccccceeCCCcCCccccceeecCCcccCCCceeEeeeEEEEEEechhHHHHHhhh-----hhhcc
Confidence 456778999998765422 22334689999999999999999999999999999887 4555
Q ss_pred EeccccHHHHHHHhccCCCeee
Q 001289 543 LIPRQYTAEWRRWLEAIRDWCV 564 (1107)
Q Consensus 543 ~~P~~~~~~~~~wl~~l~DWcI 564 (1107)
..|+..+..-.+|+..-..--+
T Consensus 213 ~wPE~Vk~mq~nWIg~s~g~~v 234 (814)
T COG0495 213 LWPETVKGMQRNWIGPSEGYEV 234 (814)
T ss_pred CCchhHHHHHHcCcCCCCCeEE
Confidence 5899999888888864444333
No 123
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=89.89 E-value=0.62 Score=51.49 Aligned_cols=51 Identities=29% Similarity=0.417 Sum_probs=34.0
Q ss_pred cCcccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCC
Q 001289 656 TSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGN 709 (1107)
Q Consensus 656 ~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGN 709 (1107)
.+..+-|.|.+ ....++..+.-.|.-..| .+.-++++++.+|+||||+.||
T Consensus 119 ithViRG~D~~-~~t~~q~~l~~aLg~~~p--~~~h~pll~~~~g~KLSKR~~~ 169 (239)
T cd00808 119 ITHVIRGEEHL-SSTPKQILLYEALGWEPP--KFAHLPLILNPDGKKLSKRKGD 169 (239)
T ss_pred CCEEEEChhhh-hChHHHHHHHHHcCCCCC--ceEeeccccCCCCCcccCCCCC
Confidence 34445577744 345555555445433334 5667788889999999999999
No 124
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=89.48 E-value=0.25 Score=57.17 Aligned_cols=60 Identities=22% Similarity=0.197 Sum_probs=38.1
Q ss_pred CCcCcccccccccc-hHHHHHHHHHHHh-cC---CCCccEEEEcce---eeCCCCccccccCCC-ccCccc
Q 001289 654 YPTSVLETGHDILF-FWVARMVMLGIKL-GG---EVPFTKVYLHPM---IRDAHGRKMSKSLGN-VIDPLE 715 (1107)
Q Consensus 654 yP~dl~~tG~Dil~-fW~armi~~~~~l-~g---~~PFk~V~~Hg~---v~D~~G~KMSKSlGN-vIdP~d 715 (1107)
|-.|+...|.||.. +=++|-++--+.- .| ..| ..+.|.+ +.+.+|+|||||.+| .|...|
T Consensus 138 ~~~d~vpvG~DQ~~h~elaRdia~r~n~~~~~~f~~P--~~l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D 206 (328)
T TIGR00233 138 YQADLVPVGIDQDQHLELTRDLAERFNKKFKNFFPKP--ESLISKFFPRLMGLSGKKMSKSDPNSAIFLTD 206 (328)
T ss_pred cCCCeeecccccHHHHHHHHHHHHHhhhhcCcccCCC--hhhhccccCCCCCCCCCcCCCCCCCCeEeecC
Confidence 34567778999974 5667776644431 12 345 4555555 556677999999997 665443
No 125
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=88.88 E-value=0.26 Score=57.81 Aligned_cols=59 Identities=20% Similarity=0.176 Sum_probs=39.6
Q ss_pred CcCcccccccccc-hHHHHHHHHHHHh-cC-CCCccEEEEcceeeCCCCccccccC-CCccCccc
Q 001289 655 PTSVLETGHDILF-FWVARMVMLGIKL-GG-EVPFTKVYLHPMIRDAHGRKMSKSL-GNVIDPLE 715 (1107)
Q Consensus 655 P~dl~~tG~Dil~-fW~armi~~~~~l-~g-~~PFk~V~~Hg~v~D~~G~KMSKSl-GNvIdP~d 715 (1107)
-.++...|.||.. +=++|-++-.+.- .| ..| ..+.|.++.+.+|.|||||. +|.|...|
T Consensus 203 ~~~lvPvG~DQ~~h~~ltRdiA~r~n~~~gf~~P--~~l~~~~lpgL~G~KMSkS~~~s~I~L~D 265 (368)
T PRK12285 203 KPTLVPVGIDQDPHIRLTRDIAERLHGGYGFIKP--SSTYHKFMPGLTGGKMSSSKPESAIYLTD 265 (368)
T ss_pred CceEEEeccchHHHHHHHHHHHHHHhhhcCCCCc--hhHhhhcccCCCCCcCCCCCCCCeeeccC
Confidence 3456667999974 5566766654411 12 234 45567888899999999998 67886654
No 126
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=88.85 E-value=0.35 Score=56.09 Aligned_cols=62 Identities=24% Similarity=0.266 Sum_probs=40.1
Q ss_pred CCcCcccccccccc-hHHHHHHHHHHHh-cCC--CCc-cEEEE-cceeeCCCC-ccccccCCCccCccc
Q 001289 654 YPTSVLETGHDILF-FWVARMVMLGIKL-GGE--VPF-TKVYL-HPMIRDAHG-RKMSKSLGNVIDPLE 715 (1107)
Q Consensus 654 yP~dl~~tG~Dil~-fW~armi~~~~~l-~g~--~PF-k~V~~-Hg~v~D~~G-~KMSKSlGNvIdP~d 715 (1107)
|.+|+...|.||.. +=.+|-++--+.. .|+ .+. ..++. |.+|.+.+| .|||||.+|.|...|
T Consensus 141 ~~~d~vpvG~DQ~~h~~laRdiA~~~n~~~~~~~~~~p~~~~~~~~~i~~L~g~~KMSKS~~~~I~L~D 209 (333)
T PRK12282 141 FKATLVPVGDDQLPMIEQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDGKAKMSKSLGNAIYLSD 209 (333)
T ss_pred hCCCEEEeccccHHHHHHHHHHHHHHhhhcCCccccCchhcccCCCcccCCCCCCcCCCCCCCeeeeeC
Confidence 56788888999974 5667777754442 221 111 11221 567777777 899999999876544
No 127
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=88.78 E-value=0.38 Score=54.94 Aligned_cols=60 Identities=22% Similarity=0.197 Sum_probs=38.2
Q ss_pred CcCcccccccccc-hHHHHHHHHHHHh-c-CCCCccEEEEcc--eeeCCCC-ccccccCCC-ccCcc
Q 001289 655 PTSVLETGHDILF-FWVARMVMLGIKL-G-GEVPFTKVYLHP--MIRDAHG-RKMSKSLGN-VIDPL 714 (1107)
Q Consensus 655 P~dl~~tG~Dil~-fW~armi~~~~~l-~-g~~PFk~V~~Hg--~v~D~~G-~KMSKSlGN-vIdP~ 714 (1107)
-+++.-.|.||-- .=.+|=++--+.. . ...|--+.+.|. .+.+.+| +|||||.+| +|...
T Consensus 145 ~a~~VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P~~~~~~~~~i~gL~g~~KMSkS~~ns~I~L~ 211 (314)
T COG0180 145 QATLVPVGEDQDQHLELTRDIARRFNHLYGEVFPLPEALISKVARLPGLDGPGKMSKSDPNSAIFLL 211 (314)
T ss_pred cCCeeccCCCchHHHHHHHHHHHHHHhhcCCccCCccccccCCCcccCCCCCCcccccCCCCeeecc
Confidence 3455556888863 4455655544331 1 112334777777 8989999 899999999 66443
No 128
>PLN02563 aminoacyl-tRNA ligase
Probab=88.77 E-value=0.5 Score=62.05 Aligned_cols=81 Identities=25% Similarity=0.292 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHcCCeeceec--------------cccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCc
Q 001289 475 KAREAVNEALKKKGLYRGAKD--------------NEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKK 540 (1107)
Q Consensus 475 ~ar~~vi~~L~~~gl~~~~~~--------------~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~ 540 (1107)
..-..+...|-++|++...+. .+-..++|+|||.+++.+-..|||++++++++++++.+ + .
T Consensus 212 ~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l---~--~ 286 (963)
T PLN02563 212 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDL---D--D 286 (963)
T ss_pred HHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhh---h--h
Confidence 455678899999998765322 12235789999999999999999999999999999998 4 4
Q ss_pred eEEeccccHHHHHHHhccCCC
Q 001289 541 LELIPRQYTAEWRRWLEAIRD 561 (1107)
Q Consensus 541 i~~~P~~~~~~~~~wl~~l~D 561 (1107)
+. .|+..++.-.+||..-.-
T Consensus 287 ~~-wp~~v~~~q~nwiG~s~g 306 (963)
T PLN02563 287 LD-WPESIKEMQRNWIGRSEG 306 (963)
T ss_pred cC-CCHHHHHHHHHhccccce
Confidence 45 699999999999865443
No 129
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=87.47 E-value=1 Score=53.25 Aligned_cols=52 Identities=21% Similarity=0.305 Sum_probs=36.2
Q ss_pred cCcccccccccchHHHHHHHHHHHh-cCCCCccEEEEcceeeCCCCccccccCCCcc
Q 001289 656 TSVLETGHDILFFWVARMVMLGIKL-GGEVPFTKVYLHPMIRDAHGRKMSKSLGNVI 711 (1107)
Q Consensus 656 ~dl~~tG~Dil~fW~armi~~~~~l-~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvI 711 (1107)
.|+.++|.|| |..-|+..-+.- .|..+ .-.+++.++.+.+|.|||||.||.+
T Consensus 181 ~dlq~GG~DQ---~~ni~~grdl~rr~g~~~-~~~lt~PLL~~ldG~KmgKs~~~a~ 233 (401)
T COG0162 181 KDLQLGGSDQ---WGNILAGRDLIRRLGQKK-VVGLTTPLLTGLDGKKMGKSEGGAV 233 (401)
T ss_pred cchhcCChHH---HHHHHHHHHHHHHhCCCC-eEEEEeccccCCCCCcccccCCCce
Confidence 4588899999 555444332211 23333 4678889999999999999999933
No 130
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=86.98 E-value=0.53 Score=55.59 Aligned_cols=59 Identities=27% Similarity=0.233 Sum_probs=38.5
Q ss_pred CCcCcccccccc-cchHHHHHHHHHHHhcCCCCccEEEEcceeeCC-CC-ccccccCCC-ccCccc
Q 001289 654 YPTSVLETGHDI-LFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDA-HG-RKMSKSLGN-VIDPLE 715 (1107)
Q Consensus 654 yP~dl~~tG~Di-l~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~-~G-~KMSKSlGN-vIdP~d 715 (1107)
|-+|+...|.|| -++=++|-++-.+... ..| -++.|.+|.+. +| .|||||.+| .|...|
T Consensus 209 l~adivpvG~DQ~~~~~LaRdia~~~~~~-~~~--~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~D 271 (383)
T PTZ00126 209 LKADICQLGMDQRKVNMLAREYCDKKKIK-KKP--IILSHHMLPGLLEGQEKMSKSDPNSAIFMED 271 (383)
T ss_pred cCCCEEEeCccHHHHHHHHHHHHHHhCCC-CCc--eeecccccccCCCCCCCCCcCCCCCeecCCC
Confidence 456777789999 4556666665443211 122 34478888887 35 799999987 575544
No 131
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=86.78 E-value=0.62 Score=55.01 Aligned_cols=56 Identities=23% Similarity=0.168 Sum_probs=36.4
Q ss_pred cCcccccccccch-HHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCccc
Q 001289 656 TSVLETGHDILFF-WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLE 715 (1107)
Q Consensus 656 ~dl~~tG~Dil~f-W~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~d 715 (1107)
.|+...|.||... =..|+++-- +.++.+| .+++.++...+|.|||||.||.|+..+
T Consensus 178 ~di~~gG~DQ~~ni~~g~dLar~--~~~~~~~--~~t~pLl~~~dg~KmgKS~~~~i~l~~ 234 (377)
T TIGR00234 178 VDLQIGGSDQWGNIRKGRDLIRR--NLPSLGF--GLTVPLLTPADGEKMGKSGGGAVSLDE 234 (377)
T ss_pred CCeeEecchhHHHHHHHHHHHHH--hcCCCce--eeceeeecCCCCCCccCCCCCcccCCc
Confidence 5688889999643 223333322 2233343 355667777889999999999987543
No 132
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=86.46 E-value=0.67 Score=61.70 Aligned_cols=60 Identities=18% Similarity=0.187 Sum_probs=57.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 001289 1038 VDIEAEREKIRTKLTETQKQREKLEK-IINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFEN 1098 (1107)
Q Consensus 1038 iD~~~Ei~kL~kkl~kl~k~i~~l~~-~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~ 1098 (1107)
-.+++|++||+|+++++++.++..+- +++++.|++++|+.+ ++.++++++++++++.+..
T Consensus 845 ~rLekel~kl~Kel~kl~~~L~n~~f~~kap~~~veka~~kl-~~~~~~l~~le~~l~~L~~ 905 (1052)
T PRK14900 845 ARVDKEIGKVDQDLAVLERKLQNPSFVQNAPPAVVEKDRARA-EELREKRGKLEAHRAMLSG 905 (1052)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999998 899999999999999 9999999999999999886
No 133
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=85.94 E-value=0.66 Score=52.58 Aligned_cols=60 Identities=25% Similarity=0.240 Sum_probs=38.0
Q ss_pred cCcccccccccc-hHHHHHHHHHHHhc-CC-CCccEEEEc--ceeeCCCC--ccccccCC-CccCccc
Q 001289 656 TSVLETGHDILF-FWVARMVMLGIKLG-GE-VPFTKVYLH--PMIRDAHG--RKMSKSLG-NVIDPLE 715 (1107)
Q Consensus 656 ~dl~~tG~Dil~-fW~armi~~~~~l~-g~-~PFk~V~~H--g~v~D~~G--~KMSKSlG-NvIdP~d 715 (1107)
.++...|.||.. +=.+|-++--+.-. |. .|-...++| .+|.+.+| .|||||.| |.|...|
T Consensus 138 ~~~vpvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d 205 (280)
T cd00806 138 ACLVPVGIDQDPHLELTRDIARRFNKLYGEIFPKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTD 205 (280)
T ss_pred CCEEeeccccHHHHHHHHHHHHHhccccccccCCCeeeccCCCccccCCCCCCcccCCCCCCeEEeeC
Confidence 466666999964 34445554333210 10 232366777 88888877 49999999 9987655
No 134
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=84.93 E-value=4.6 Score=37.39 Aligned_cols=62 Identities=16% Similarity=0.270 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001289 1040 IEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1105 (1107)
Q Consensus 1040 ~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~~l~~ 1105 (1107)
+..||.+++.++......++.++.+|..+ ..|++-++.-.+.+..+...+...++.|..|.+
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL~~~----eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRLRRR----ELSPEARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHccc----CCChHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 56899999999999999999999999965 568888888888888888888888888888765
No 135
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=82.91 E-value=0.71 Score=60.09 Aligned_cols=83 Identities=22% Similarity=0.262 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHcCCeeceec--------------ccc-ccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCC
Q 001289 475 KAREAVNEALKKKGLYRGAKD--------------NEM-RLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKK 539 (1107)
Q Consensus 475 ~ar~~vi~~L~~~gl~~~~~~--------------~~~-~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~ 539 (1107)
++-..+...|-++|++...+. .+. ..++|+|||.+++.+-.+|||++++++++++++.+ .
T Consensus 130 ~~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l-----~ 204 (842)
T TIGR00396 130 KWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDL-----E 204 (842)
T ss_pred HHHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHHHH-----h
Confidence 345567788999998543211 011 12789999999999999999999999999999988 3
Q ss_pred ceEEeccccHHHHHHHhccCCCe
Q 001289 540 KLELIPRQYTAEWRRWLEAIRDW 562 (1107)
Q Consensus 540 ~i~~~P~~~~~~~~~wl~~l~DW 562 (1107)
.+...|++.++...+||..-.-.
T Consensus 205 ~~~~wp~~v~~~q~~wig~s~g~ 227 (842)
T TIGR00396 205 ELDHWPESVKEMQRNWIGKSEGV 227 (842)
T ss_pred hhccccHHHHHHHHhcccccceE
Confidence 45568999999999998654433
No 136
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=82.58 E-value=0.89 Score=52.85 Aligned_cols=61 Identities=26% Similarity=0.299 Sum_probs=40.5
Q ss_pred CCcCcccccccccc-hHHHHHHHHHHHh-cC---CCCccEEEE-c-ceeeCCCCc--cccccCC---CccCccc
Q 001289 654 YPTSVLETGHDILF-FWVARMVMLGIKL-GG---EVPFTKVYL-H-PMIRDAHGR--KMSKSLG---NVIDPLE 715 (1107)
Q Consensus 654 yP~dl~~tG~Dil~-fW~armi~~~~~l-~g---~~PFk~V~~-H-g~v~D~~G~--KMSKSlG---NvIdP~d 715 (1107)
|-+|+...|.||.. +=++|-++--+.. .| ..| ..++. | .++.+.+|. |||||.+ |.|...|
T Consensus 137 ~~~divpvG~DQ~~h~elaRdia~~~n~~~~~~f~~P-~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D 209 (333)
T PRK00927 137 YKADLVPVGEDQKQHLELTRDIARRFNNLYGEVFPVP-EPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLD 209 (333)
T ss_pred cCCCEEeeccchHHHHHHHHHHHHHhhhhccccCCCC-hhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeC
Confidence 45678888999984 5667776644321 12 245 33432 2 678888887 9999999 7886554
No 137
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=81.72 E-value=3.6 Score=50.09 Aligned_cols=110 Identities=18% Similarity=0.202 Sum_probs=59.3
Q ss_pred CcccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCccccccc-cCchhHHHHhh-cCCC
Q 001289 657 SVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVING-ISLEGLHKRLE-EGNL 734 (1107)
Q Consensus 657 dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g-~~l~~l~~~l~-~~nl 734 (1107)
+..+-|.|.+. ...+.+.+.-.|.-..| .+.-++++++.+|.||||..| .+...++++. +.-+.+...+. -|.-
T Consensus 199 thvIrG~d~~~-~t~~~~~l~~aLg~~~p--~~~H~p~l~~~~g~kLSKR~g-~~~l~~l~~~g~~p~a~~~~~~~lG~~ 274 (470)
T TIGR00464 199 THVIRGEDHIS-NTPKQILIYQALGWKIP--VFAHLPMILDEDGKKLSKRDG-ATSIMQFKEQGYLPEALINYLALLGWS 274 (470)
T ss_pred CEEEECchhhc-CHHHHHHHHHHcCCCCC--eEEEEeeeecCCCccccccCC-CccHHHHHHCCCCHHHHHHHHHHcCCC
Confidence 44446777654 33344333333332233 566667888899999999999 5555555542 12222222221 1211
Q ss_pred ChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHH
Q 001289 735 DPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG 785 (1107)
Q Consensus 735 ~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~ 785 (1107)
++. .. -..--.+++|++.+...+. .++.||++.+.-
T Consensus 275 ~~~-------------~~-e~~~~~~~i~~f~l~~~~~-~~~~fd~~kL~~ 310 (470)
T TIGR00464 275 PPD-------------DQ-EFFSLEELIEIFSLNRVSK-SPAKFDWKKLQW 310 (470)
T ss_pred CCC-------------cc-ccCCHHHHHHhcCcccCCC-CCCeecHHHHHH
Confidence 110 00 0011248899887765444 589999988654
No 138
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=80.54 E-value=2.3 Score=55.23 Aligned_cols=101 Identities=24% Similarity=0.281 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHHHcCCeeceec--------------cccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCC
Q 001289 474 FKAREAVNEALKKKGLYRGAKD--------------NEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKK 539 (1107)
Q Consensus 474 ~~ar~~vi~~L~~~gl~~~~~~--------------~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~ 539 (1107)
.++-..+...|.++|++...+. .+...++|+|||.+++.+-.+|||+++.++++++++.+ +
T Consensus 132 ~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l---~-- 206 (805)
T PRK00390 132 YKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDL---D-- 206 (805)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHH---H--
Confidence 3455678889999998654321 12224789999999999999999999999999999988 3
Q ss_pred ceEEeccccHHHHHHHhccCCCeeeeecC-CCcccceeEEE
Q 001289 540 KLELIPRQYTAEWRRWLEAIRDWCVSRQL-WWGHQIPAWYV 579 (1107)
Q Consensus 540 ~i~~~P~~~~~~~~~wl~~l~DWcISRQ~-~WG~pIP~~~~ 579 (1107)
.+.=.|+..+..-.+||..-.-+.|.=.+ .-+..|++|-.
T Consensus 207 ~~~~w~~~v~~~~~~wig~~~~~~i~f~~~~~~~~l~v~TT 247 (805)
T PRK00390 207 KLEDWPEKVKTMQRNWIGRSEGAEVTFKVEDSDEKIEVFTT 247 (805)
T ss_pred hhccCcHHHHHHHHhhccccceEEEEEEccCCCCEEEEEeC
Confidence 33235888888888998755555442111 11245666643
No 139
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=80.24 E-value=4.7 Score=49.94 Aligned_cols=78 Identities=12% Similarity=0.059 Sum_probs=49.6
Q ss_pred cEEEEcceeeCCCCccccccCCCccCccccc------cccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCch
Q 001289 687 TKVYLHPMIRDAHGRKMSKSLGNVIDPLEVI------NGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTD 760 (1107)
Q Consensus 687 k~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI------~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaD 760 (1107)
...+-+|++. .+|.|||||++...--.-.+ .-.++.+|+.+ .|-++
T Consensus 324 P~~~H~~~L~-~~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrr---------------------------G~~Pe 375 (567)
T PRK04156 324 PETIHYGRLK-IEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRR---------------------------GILPE 375 (567)
T ss_pred ceEEEcceec-CCCceeecccchhccccCccccccCCchHHHHHHHHc---------------------------CCCHH
Confidence 4566677776 68999999984311000001 11233344333 57799
Q ss_pred HHHHHHHhccCccccccccHHHHHHH-HHHHHH
Q 001289 761 ALRFALVSYTAQSDKINLDIQRVVGY-RQWCNK 792 (1107)
Q Consensus 761 aLRf~L~~~~~~~~Dinf~~~~v~~~-r~f~nK 792 (1107)
|+|.|++..+....|..|+++.+... |+.++.
T Consensus 376 Ai~~fl~~lG~s~~~~~~~~~~L~~~nr~~ld~ 408 (567)
T PRK04156 376 AIRELIIEVGVKETDATISWENLYAINRKLIDP 408 (567)
T ss_pred HHHHHHHHhCCCCCCcccCHHHHHHHHHHHHhc
Confidence 99999998777768999999988764 334443
No 140
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=78.65 E-value=6.5 Score=43.49 Aligned_cols=31 Identities=10% Similarity=0.174 Sum_probs=25.7
Q ss_pred CCCchHHHHHHHhccCccccccccHHHHHHH
Q 001289 756 ECGTDALRFALVSYTAQSDKINLDIQRVVGY 786 (1107)
Q Consensus 756 ~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~ 786 (1107)
.+-++|++-|++..+....++.|+++.+...
T Consensus 197 G~~peal~~~l~~lG~s~~~~~~~~~~l~~~ 227 (238)
T cd00807 197 GVTPEAIRQFILRQGVSKADSTIDWDKLEAC 227 (238)
T ss_pred CCCHHHHHHHHHHhCCCCCCcccCHHHHHHH
Confidence 4568999999998888888999999887653
No 141
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=78.55 E-value=2.6 Score=47.61 Aligned_cols=34 Identities=29% Similarity=0.498 Sum_probs=24.6
Q ss_pred CCC-CCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCc
Q 001289 186 VTG-ALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1107)
Q Consensus 186 vnG-~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~ 223 (1107)
||| .|||||.+. -..+.++++ .|+++.+..|=.|
T Consensus 8 PTg~~lHlGh~~~---l~~~~~lq~-~g~~~~~~I~d~~ 42 (273)
T cd00395 8 PTADSLHIGHLIG---LLTFRRFQH-AGHRPIFLIGGQT 42 (273)
T ss_pred CCCCCccHHHHHH---HHHHHHHHH-CCCCEEEEEecCc
Confidence 699 799999877 334556655 6899888777444
No 142
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=77.91 E-value=0.78 Score=56.17 Aligned_cols=52 Identities=25% Similarity=0.376 Sum_probs=42.3
Q ss_pred cceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHhc
Q 001289 500 LGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLE 557 (1107)
Q Consensus 500 ~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~ 557 (1107)
-+++||||.+||.....||||+.+++++++++.+ + .+.=.|+ .++.-.+|+.
T Consensus 198 ~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L---~--~L~~W~~-vk~mQrnWIG 249 (876)
T KOG0435|consen 198 DGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGL---E--TLPEWPE-VKDMQRNWIG 249 (876)
T ss_pred cCccccccchhhHHHHHHHHhhhhHHHHHHHHHH---H--hhhhhhh-HHHHHHhhcc
Confidence 4789999999999999999999999999999998 3 4544455 5566667764
No 143
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=76.76 E-value=12 Score=44.07 Aligned_cols=61 Identities=18% Similarity=0.220 Sum_probs=39.7
Q ss_pred HHHHhcCCcccCCC--------CCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCc
Q 001289 158 SWWENSGYFIADNK--------SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1107)
Q Consensus 158 ~~W~~~~~f~~~~~--------~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~ 223 (1107)
-.+...|+|-...+ ..+++|++.+|. -|||.+||||... -..+.+++. .|+.+.+..+=+|
T Consensus 40 h~~~rR~~~~~hrd~d~il~~~~~~~~~~iytG~-~PSG~lHLGh~~~---~~~~~~lQ~-~g~~~~i~IaD~h 108 (368)
T PRK12285 40 HPLMRRGIIFGHRDYDKILEAYRNGKPFAVYTGF-MPSGPMHIGHKMV---FDELKWHQE-FGANVYIPIADDE 108 (368)
T ss_pred chHHhcCeeeecCCHHHHHHHHhcCCCeEEEEcc-CCCCCccHHHHHH---HHHHHHHHh-cCCCEEEEecchH
Confidence 34556677655432 234567777764 4689999999753 335666666 7888877776555
No 144
>PLN02486 aminoacyl-tRNA ligase
Probab=75.04 E-value=8 Score=45.84 Aligned_cols=58 Identities=17% Similarity=0.172 Sum_probs=35.1
Q ss_pred HHhcCCcccCCC--------CCCCcEEEECCCCCCCC-CCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCC
Q 001289 160 WENSGYFIADNK--------SSKPSFVIVLPPPNVTG-ALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMD 222 (1107)
Q Consensus 160 W~~~~~f~~~~~--------~~k~~f~i~~pPPyvnG-~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D 222 (1107)
|-..|+|-...+ +.+++|++.+| --||| .|||||.... ..+..+++..|..+... -+|
T Consensus 49 ~lrRgi~~~hrd~~~~l~~~e~~~~~~vYtG-~~PSg~~lHlGHlv~~---~~~~~lQ~~~~~~~~I~-iaD 115 (383)
T PLN02486 49 FLRRGVFFAHRDLEEILDAYEKGEKFYLYTG-RGPSSEALHLGHLIPF---MFTKYLQDAFKVPLVIQ-LTD 115 (383)
T ss_pred ccccceeeeccCHHHHHHHHhcCCCeEEEeC-CCCCCccccHHHHHHH---HHHHHHHHhCCCeEEEE-ecC
Confidence 445566554332 23457888887 46898 5999996554 34445555656665555 345
No 145
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=75.01 E-value=3.7 Score=44.53 Aligned_cols=50 Identities=22% Similarity=0.130 Sum_probs=31.6
Q ss_pred cccccccccchHHHHHHHHHHHhcCC-CCccEEEEcceeeCCCCccccccCC
Q 001289 658 VLETGHDILFFWVARMVMLGIKLGGE-VPFTKVYLHPMIRDAHGRKMSKSLG 708 (1107)
Q Consensus 658 l~~tG~Dil~fW~armi~~~~~l~g~-~PFk~V~~Hg~v~D~~G~KMSKSlG 708 (1107)
+++.|.|+. .++.++..+.-.+.-. .|--..+.+|+|+..+|.||||..|
T Consensus 162 i~v~g~~~~-~~~~~~~~~~~~lg~~~~~~~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 162 IYVVGADHH-GHFKRLFAALELLGYDEAKKLEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred EEEECCCHH-HHHHHHHHHHHHcCCCCCCCeEEEEEEeEEcCCCCCCCCCCC
Confidence 457788864 4445544433333212 3434556679999888999999987
No 146
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=74.87 E-value=6.8 Score=44.46 Aligned_cols=36 Identities=25% Similarity=0.416 Sum_probs=24.1
Q ss_pred CCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCc
Q 001289 185 NVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1107)
Q Consensus 185 yvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~ 223 (1107)
-|||.|||||.++.+. .+.+.++. |+++.+..+=+|
T Consensus 7 ~PTG~lHLG~~~~al~--~~~~lQ~a-g~~~~~~IaD~h 42 (280)
T cd00806 7 QPSGSLHLGHYLGAFR--FWVWLQEA-GYELFFFIADLH 42 (280)
T ss_pred CCCchhhHHHHHHHHH--HHHHHHhC-CCCEEEEecchH
Confidence 3699999999888433 23344433 888877776444
No 147
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=73.69 E-value=9.2 Score=45.78 Aligned_cols=61 Identities=21% Similarity=0.313 Sum_probs=48.0
Q ss_pred Eecc-ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001289 1034 LKVE-VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1105 (1107)
Q Consensus 1034 l~l~-iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~~l~~ 1105 (1107)
+.+. +|.++.++.++++++++++++++++.++..- | +.+.|+.+++.+++.+++.++.++.
T Consensus 233 ~~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~------~-----k~~~k~~~~~~q~~~~~k~~~~~~~ 294 (406)
T PF02388_consen 233 FFLAELNGKEYLESLQEKLEKLEKEIEKLEEKLEKN------P-----KKKNKLKELEEQLASLEKRIEEAEE 294 (406)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------T-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------c-----chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445 8999999999999999999999999987642 2 5666777777777777777776654
No 148
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=73.08 E-value=94 Score=37.85 Aligned_cols=192 Identities=13% Similarity=0.101 Sum_probs=100.1
Q ss_pred CCccEEEEcceeeCCCCccccccCCCccCccccccccCchhHHHHhhcC------CCChHHHHHHHhccCCCCCCCCCCC
Q 001289 684 VPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEG------NLDPKELEVAKKGQKADFPNGIPEC 757 (1107)
Q Consensus 684 ~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~------nl~~~e~~~a~~~~~~~fp~gi~~~ 757 (1107)
.|+.+ ++-|+| +=||.-+|+++-..|+++... +.+++..... +.+|+++.. -.
T Consensus 355 ~~~qH-V~~G~v-----~GmsTRkG~~~fl~dil~e~r-e~m~e~M~s~~t~~~~~~~~~~vad--------------~l 413 (567)
T KOG1195|consen 355 KKLQH-VNFGRV-----QGMSTRKGKVVFLDDILEEAR-EQMLEVMASNKTKPVQMANPDEVAD--------------RL 413 (567)
T ss_pred hhcce-eccccc-----ccccccCCceeeHHHHHHHHH-HHHHHHHHhccCCCCCCCCHHHHHH--------------HH
Confidence 35443 455666 469999999999999997321 1111111111 233343332 46
Q ss_pred CchHHHHHHHhccCccccccccHHHHHHHHH--HHHHHHHHHH--HHhhhhCCCCCCCCC--CCCCCCC-hhhHHHHHHH
Q 001289 758 GTDALRFALVSYTAQSDKINLDIQRVVGYRQ--WCNKLWNAVR--FSMSKLGEGFVPPLK--LHPHNLP-FSCKWILSVL 830 (1107)
Q Consensus 758 GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r~--f~nKl~N~~r--f~l~~l~~~~~p~~~--~~~~~~~-~~D~wil~~L 830 (1107)
|+-|+.+-..... -..+..|+++++-.... =.--.|+-.| -+..+..+ +.+... .+...+. +.-.-|+..|
T Consensus 414 g~sAviv~d~k~r-r~s~yeF~w~~~~~~~gdtg~yLQY~HsRL~Slerk~~~-~~~~~l~~~d~~~l~ep~~~~Lv~~L 491 (567)
T KOG1195|consen 414 GLSAVIVQDFKGR-RISNYEFSWNRVLSFEGDTGPYLQYTHSRLRSLERKFSD-VTLDDLDEIDFSLLTEPDALLLVRLL 491 (567)
T ss_pred hhHHHHHHHHHHH-hcccceEEhhhhheecCCchHHHHHHHHHHHHHHHhccc-cCchhhhccchhhcCChhHHHHHHHH
Confidence 7777777655433 33588899887643110 0000111111 11122221 211110 1111111 1123477889
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 001289 831 NKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLL 902 (1107)
Q Consensus 831 ~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL 902 (1107)
..+...+..+++.++.+..+..+.+.. +.++..|=. -|..+...+..-.|.........+|.+++++|
T Consensus 492 ~~fp~vve~s~e~lE~~~lV~YL~~La-~a~s~~yk~---l~V~d~~~eia~aRL~Lf~AvRqVL~ngm~lL 559 (567)
T KOG1195|consen 492 LQFPEVVEKSMEQLEPCTLVTYLFKLA-HAVSSAYKI---LWVKDSPMEIALARLLLFSAVRQVLNNGMRLL 559 (567)
T ss_pred hhhHHHHHHHHHhhcchhHHHHHHHHH-HHHHhHHhh---eeecCCcHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 999999999999999999999998876 566666521 12222222222233333334445666677776
No 149
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=71.67 E-value=3.3 Score=46.75 Aligned_cols=72 Identities=18% Similarity=0.203 Sum_probs=43.6
Q ss_pred CCCC-CCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCC--ccccChHHHHHHHHHHHH
Q 001289 185 NVTG-ALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLT--RHDIGREQFVSEVWKWKD 261 (1107)
Q Consensus 185 yvnG-~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~--~~d~~re~f~~~~~~w~~ 261 (1107)
-||| .|||||.+.. -.+.|++++ |++|.+..|=.|+=+- ...|++ |.....++ ..
T Consensus 8 ~PTg~~lHLG~~~~~---~~~~~lq~~-g~~~~ilI~D~~a~~~----------~~~~~~~~r~~~~~~~--------i~ 65 (269)
T cd00805 8 DPTAPSLHLGHLVPL---MKLRDFQQA-GHEVIVLIGDATAMIG----------DPSGKSEERKLLDLEL--------IR 65 (269)
T ss_pred CCCCCcccHHHHHHH---HHHHHHHHC-CCeEEEEECCCeeecC----------CCCCccccccCCCHHH--------HH
Confidence 3699 8999998752 367888876 9998888875553210 011211 22222222 23
Q ss_pred HHHHHHHHHHHHhcCcc
Q 001289 262 EYGGTILRQQRRLGASL 278 (1107)
Q Consensus 262 ~~~~~i~~ql~~lG~s~ 278 (1107)
.+...+..++..+|...
T Consensus 66 ~~~~~~~~~~~a~g~~~ 82 (269)
T cd00805 66 ENAKYYKKQLKAILDFI 82 (269)
T ss_pred HHHHHHHHHHHHHHccC
Confidence 34456788899999763
No 150
>PLN02486 aminoacyl-tRNA ligase
Probab=70.59 E-value=4.4 Score=47.95 Aligned_cols=54 Identities=26% Similarity=0.241 Sum_probs=34.2
Q ss_pred ccccccccc-chHHHHHHHHHHHhcCCCCccEEEEcceeeCCCC--ccccccCCC-ccCccc
Q 001289 658 VLETGHDIL-FFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHG--RKMSKSLGN-VIDPLE 715 (1107)
Q Consensus 658 l~~tG~Dil-~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G--~KMSKSlGN-vIdP~d 715 (1107)
+.-.|.||. ++=++|-++-- +....| .++.|.++...+| .|||||.+| .|...|
T Consensus 222 lVPvG~DQd~~~~ltRdia~r--~~~~kp--~~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D 279 (383)
T PLN02486 222 LIPCAIDQDPYFRMTRDVAPR--LGYYKP--ALIESRFFPALQGESGKMSASDPNSAIYVTD 279 (383)
T ss_pred eeecccchHHHHHHHHHHHHH--hCCCCc--ceeccccccCCCCCCCcCcCcCCCCeeeccC
Confidence 444588876 34555665533 333356 3444567777776 799999988 687655
No 151
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=69.05 E-value=4.1 Score=51.52 Aligned_cols=58 Identities=24% Similarity=0.106 Sum_probs=36.3
Q ss_pred CCcCccccccccc-chHHHHHHHHHHHhcCCCCccEE-EEcceeeCCCC--ccccccC-CCccCccc
Q 001289 654 YPTSVLETGHDIL-FFWVARMVMLGIKLGGEVPFTKV-YLHPMIRDAHG--RKMSKSL-GNVIDPLE 715 (1107)
Q Consensus 654 yP~dl~~tG~Dil-~fW~armi~~~~~l~g~~PFk~V-~~Hg~v~D~~G--~KMSKSl-GNvIdP~d 715 (1107)
|..|+...|.||. ++=++|-++-. .|..| +.+ +.|.++.+.+| .|||||. +|.|...|
T Consensus 174 l~adivpvG~DQ~qh~eLaRdia~~---~g~~~-kpvil~~~~LpGL~gg~~KMSKS~p~naI~L~D 236 (682)
T PTZ00348 174 LKADICQLGLDQRKVNMLAREYCDL---IGRKL-KPVILSHHMLAGLKQGQAKMSKSDPDSAIFMED 236 (682)
T ss_pred cCCCEEEeCccHHHHHHHHHHHHHH---hCCCC-CceecccccCcCCCCCCCcCCCCCCCCeecccC
Confidence 4566777799985 44555655532 23222 223 45677776653 6999999 68887655
No 152
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=69.00 E-value=26 Score=33.82 Aligned_cols=81 Identities=16% Similarity=0.169 Sum_probs=55.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHH
Q 001289 820 PFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGL 899 (1107)
Q Consensus 820 ~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~~l 899 (1107)
...++-++..+..+...+..+++.++++.+++.++++. ..|+.+| +.+ +.+..+++.....|.........++..++
T Consensus 32 ~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La-~~f~~fy-~~~-~I~~~~~~~~~~~RL~Ll~~v~~vl~~~l 108 (119)
T PF05746_consen 32 EEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELA-QAFNSFY-DNV-RILDEDEEIRKNNRLALLKAVRQVLKNGL 108 (119)
T ss_dssp SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHH-HHHHHHH-HHS--STTSTTCHH-HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHH-hhc-cccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788999999999999999999999999999987 6777777 433 33433333210244555555566677777
Q ss_pred HHHh
Q 001289 900 RLLH 903 (1107)
Q Consensus 900 ~LL~ 903 (1107)
.||.
T Consensus 109 ~llg 112 (119)
T PF05746_consen 109 DLLG 112 (119)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 7764
No 153
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=68.45 E-value=24 Score=41.84 Aligned_cols=94 Identities=20% Similarity=0.206 Sum_probs=59.2
Q ss_pred CCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHH
Q 001289 183 PPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDE 262 (1107)
Q Consensus 183 PPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~ 262 (1107)
-|-|||.||+|-++|...-=+++|- ..|.-+|.+=-||-. |.- ..
T Consensus 39 APSPTGfLHlGgLRTALfNYLfArk--~gGkFiLRiEDTDq~-------------------R~v--------------~g 83 (524)
T KOG1149|consen 39 APSPTGFLHLGGLRTALFNYLFARK--KGGKFILRIEDTDQK-------------------RLI--------------RG 83 (524)
T ss_pred cCCCCcceehhhHHHHHHHHHHHHh--cCCeEEEEecccccc-------------------ccc--------------cc
Confidence 4888999999999998777777764 468888877777741 110 11
Q ss_pred HHHHHHHHHHHhcCccccCCccc--cCCh----hhHHHHHHHHHHHHHcCCEEEee
Q 001289 263 YGGTILRQQRRLGASLDWSRECF--TMDE----KRSKAVTEAFVRLYKEGLIYRDL 312 (1107)
Q Consensus 263 ~~~~i~~ql~~lG~s~DW~r~~~--T~d~----~~~~~v~~~F~~L~~~GlIyr~~ 312 (1107)
...+|.+.|+-+|+..|=. +.+ ..-| +..+.-...-.+|.+.|..||..
T Consensus 84 s~e~i~~~L~w~nl~~DEg-P~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYrCF 138 (524)
T KOG1149|consen 84 SEEAIYEDLKWANLDWDEG-PGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYRCF 138 (524)
T ss_pred hHHHHHHHHHhcCCCcccC-CCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeEec
Confidence 2257788888888666611 111 1111 12222334455789999999864
No 154
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=66.57 E-value=15 Score=44.21 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=18.4
Q ss_pred EEEEcceeeCCCCccccccCCC
Q 001289 688 KVYLHPMIRDAHGRKMSKSLGN 709 (1107)
Q Consensus 688 ~V~~Hg~v~D~~G~KMSKSlGN 709 (1107)
...-+++++|.+|+||||+.|.
T Consensus 221 ~f~Hlpli~~~~g~KLSKR~~~ 242 (433)
T PRK12410 221 TYAHLPIILNEEGKKMSKRDNA 242 (433)
T ss_pred eEEEeeeeeCCCCCeeecccCh
Confidence 4555589999999999999884
No 155
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=63.64 E-value=38 Score=36.27 Aligned_cols=75 Identities=20% Similarity=0.295 Sum_probs=58.0
Q ss_pred EEEEEecc----ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001289 1030 LKVYLKVE----VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1105 (1107)
Q Consensus 1030 ~~v~l~l~----iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~~l~~ 1105 (1107)
..+|=.+. ......+.+|.++++.++.+++.++..+.... ..+-+.+-++..-+++.+++.+++.+++.++.+..
T Consensus 53 sn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~-~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~ 131 (188)
T PF03962_consen 53 SNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAK-KGREESEEREELLEELEELKKELKELKKELEKYSE 131 (188)
T ss_pred eeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555444 45677788899999999999998888888763 45566677888888899999999999998887654
No 156
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=62.72 E-value=24 Score=39.25 Aligned_cols=30 Identities=7% Similarity=0.153 Sum_probs=23.1
Q ss_pred CCCchHHHHHHHhccCccccccccHHHHHH
Q 001289 756 ECGTDALRFALVSYTAQSDKINLDIQRVVG 785 (1107)
Q Consensus 756 ~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~ 785 (1107)
.+-++|++-|++..+-...+..++++.+..
T Consensus 199 G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~ 228 (240)
T cd09287 199 GIRPEAIRDFIIEVGVKQTDATISWENLYA 228 (240)
T ss_pred CCCHHHHHHHHHHhCCCCCCCccCHHHHHH
Confidence 466899999888877766788888877654
No 157
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=62.45 E-value=17 Score=44.70 Aligned_cols=51 Identities=31% Similarity=0.416 Sum_probs=33.1
Q ss_pred CcccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCc
Q 001289 657 SVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNV 710 (1107)
Q Consensus 657 dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNv 710 (1107)
+-.+-|.|.+. ...+.+.+.-++.-..| ...-+++|++.+|.||||..|.+
T Consensus 198 thVIRG~d~~~-~t~~q~~l~~aLG~~~p--~~~H~plv~~~~g~KLSKR~g~~ 248 (513)
T PRK14895 198 THIIRGDDHLT-NAARQLAIYQAFGYAVP--SMTHIPLIHGADGAKLSKRHGAL 248 (513)
T ss_pred CEEEECchHhh-hHHHHHHHHHHcCCCCC--eEEEEEeEEcCCCCccccccCch
Confidence 33345666442 34444444444433334 77777999999999999999874
No 158
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=62.15 E-value=6.7 Score=40.11 Aligned_cols=23 Identities=35% Similarity=0.842 Sum_probs=19.8
Q ss_pred HHHHHHhcCCeeeeccCCCccCh
Q 001289 204 IIRWRRMSGYNALWVPGMDHAGI 226 (1107)
Q Consensus 204 i~Ry~rm~G~~Vl~~~G~D~~Gi 226 (1107)
++||.|+.||+|++..+.+..-|
T Consensus 12 Lar~LR~lG~Dt~~~~~~~D~~i 34 (147)
T PF01927_consen 12 LARWLRLLGYDTLYSRDIDDDEI 34 (147)
T ss_pred HHHHHHHCCCcEEEeCCCChHHH
Confidence 69999999999999998866544
No 159
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=61.57 E-value=15 Score=43.94 Aligned_cols=45 Identities=22% Similarity=0.307 Sum_probs=29.6
Q ss_pred CcEEEECCCCCCCC-CCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCcc
Q 001289 175 PSFVIVLPPPNVTG-ALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHA 224 (1107)
Q Consensus 175 ~~f~i~~pPPyvnG-~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~ 224 (1107)
+++.+..| --||| +|||||+... -.+.++ ...|++++++.|=-|+
T Consensus 32 ~~~~iy~G-~dPT~~sLHlGhlv~l---~~l~~l-q~~G~~~~~ligd~ta 77 (410)
T PRK13354 32 KPLTLYLG-FDPTAPSLHIGHLVPL---MKLKRF-QDAGHRPVILIGGFTG 77 (410)
T ss_pred CCcEEEEc-ccCCCCCcchhhHHHH---HHHHHH-HHcCCeEEEEEccccc
Confidence 45566665 35799 5999995542 224444 4579999988876553
No 160
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=60.67 E-value=61 Score=33.79 Aligned_cols=62 Identities=24% Similarity=0.431 Sum_probs=45.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001289 1039 DIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1105 (1107)
Q Consensus 1039 D~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~~l~~ 1105 (1107)
+++.++..|+.++..++.++..++..|++ ..+.|.. +.-+..++++++|++.+++.|..|+.
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~---L~~~~t~--~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELAS---LSSEPTN--EELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677888888999999888888888885 3445532 23455677777888888888877765
No 161
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=60.64 E-value=24 Score=43.38 Aligned_cols=76 Identities=18% Similarity=0.152 Sum_probs=49.9
Q ss_pred EEcceeeCCCCccccccCCCccCccccccc------cCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHH
Q 001289 690 YLHPMIRDAHGRKMSKSLGNVIDPLEVING------ISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALR 763 (1107)
Q Consensus 690 ~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g------~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLR 763 (1107)
+.|-..++..|.||||++..-.-=.-.++| -|+.+|+.+ .|-++|+|
T Consensus 234 ~~~f~rln~~~~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrr---------------------------G~~peAi~ 286 (523)
T PLN03233 234 IHAFARMNFMNTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRR---------------------------GIDIDALK 286 (523)
T ss_pred eeeeEEECCCCCcccccCchhhhccCcccCccCCchHhHHHHHHC---------------------------CCCHHHHH
Confidence 467777889999999997321100001111 023344433 57799999
Q ss_pred HHHHhccCccccccccHHHHHHH-HHHHHH
Q 001289 764 FALVSYTAQSDKINLDIQRVVGY-RQWCNK 792 (1107)
Q Consensus 764 f~L~~~~~~~~Dinf~~~~v~~~-r~f~nK 792 (1107)
=|++..+....|..++++.+... |+.++.
T Consensus 287 ~f~~~~G~s~~~~~i~~~~l~~~nR~~ld~ 316 (523)
T PLN03233 287 MFMCSQGASRRVVNLDWAKFWAENKKEIDK 316 (523)
T ss_pred HHHHHhCCCCCCceecHHHHHHHHHHHhcc
Confidence 99999888888999999988764 445544
No 162
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=59.63 E-value=12 Score=44.61 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=23.1
Q ss_pred CCC-CCCchhhHHhHHHHHHHHHHHhcCCeeeeccCC
Q 001289 186 VTG-ALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 221 (1107)
Q Consensus 186 vnG-~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~ 221 (1107)
||| +|||||..... .+ |.....|++|..+.|-
T Consensus 41 PTa~slHlGhlv~l~---kL-~~fQ~aGh~~ivLigd 73 (401)
T COG0162 41 PTAPSLHLGHLVPLM---KL-RRFQDAGHKPIVLIGD 73 (401)
T ss_pred CCCCccchhhHHHHH---HH-HHHHHCCCeEEEEecc
Confidence 499 89999986532 23 4445579999998883
No 163
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=59.06 E-value=7.5 Score=46.03 Aligned_cols=41 Identities=17% Similarity=0.318 Sum_probs=27.3
Q ss_pred EEEECCCCCCCC-CCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCC
Q 001289 177 FVIVLPPPNVTG-ALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMD 222 (1107)
Q Consensus 177 f~i~~pPPyvnG-~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D 222 (1107)
+.+..| --||| +|||||.... -.+.|+++ .|++|.++.|=-
T Consensus 31 ~~vy~G-~dPTg~~lHlGh~v~l---~~l~~lq~-~G~~~~iligd~ 72 (377)
T TIGR00234 31 IKLYVG-FDPTAPSLHLGHLVPL---LKLRDFQQ-AGHEVIVLLGDA 72 (377)
T ss_pred CEEEEe-eCCCCCCccHHHHHHH---HHHHHHHH-CCCcEEEEEecc
Confidence 444444 24699 8999997752 33556665 699988887633
No 164
>PF14282 FlxA: FlxA-like protein
Probab=57.87 E-value=48 Score=32.06 Aligned_cols=56 Identities=13% Similarity=0.261 Sum_probs=38.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001289 1039 DIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLG 1104 (1107)
Q Consensus 1039 D~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~~l~ 1104 (1107)
+.+..|++|.+++..|+.+|..+..- ...+++.. .++...++.+|..|+..|.++.
T Consensus 16 ~~~~~I~~L~~Qi~~Lq~ql~~l~~~-------~~~~~e~k---~~q~q~Lq~QI~~LqaQI~qlq 71 (106)
T PF14282_consen 16 SSDSQIEQLQKQIKQLQEQLQELSQD-------SDLDAEQK---QQQIQLLQAQIQQLQAQIAQLQ 71 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcc-------cCCCHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999877653 12233332 4566667777777777777664
No 165
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=55.58 E-value=9.2 Score=44.48 Aligned_cols=43 Identities=19% Similarity=0.277 Sum_probs=27.1
Q ss_pred cEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCc
Q 001289 176 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1107)
Q Consensus 176 ~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~ 223 (1107)
++++.+| --|||.+||||... +.. +.++++. |+++.+..|=.|
T Consensus 30 ~~~v~~G-~~PTG~lHLG~~~~-~~~--~~~lq~~-g~~~~i~IaD~h 72 (329)
T PRK08560 30 EPKAYIG-FEPSGKIHLGHLLT-MNK--LADLQKA-GFKVTVLLADWH 72 (329)
T ss_pred CCEEEEc-cCCCCcchhhhhHH-HHH--HHHHHHC-CCeEEEEEccch
Confidence 4445554 35689999999653 222 6666664 888766665444
No 166
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=54.31 E-value=1e+02 Score=27.71 Aligned_cols=56 Identities=16% Similarity=0.247 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001289 1040 IEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESN 1101 (1107)
Q Consensus 1040 ~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~ 1101 (1107)
....+.+++..++.+..-|++++--+.+ +|...+..-..|+.+++.++..++..+.
T Consensus 23 r~~~i~~~e~~l~ea~~~l~qMe~E~~~------~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 23 RKSLIREIERDLDEAEELLKQMELEVRS------LPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCT------S-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456778888888888888888876663 4889999999999999999999998775
No 167
>PRK11020 hypothetical protein; Provisional
Probab=52.86 E-value=33 Score=33.37 Aligned_cols=50 Identities=20% Similarity=0.175 Sum_probs=31.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001289 1039 DIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLG 1104 (1107)
Q Consensus 1039 D~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~~l~ 1104 (1107)
++.+||.+|..+|++++..++..+.+=+ .+.++++..|++.+++.|++++
T Consensus 2 ~~K~Eiq~L~drLD~~~~Klaaa~~rgd----------------~~~i~qf~~E~~~l~k~I~~lk 51 (118)
T PRK11020 2 VEKNEIKRLSDRLDAIRHKLAAASLRGD----------------AEKYAQFEKEKATLEAEIARLK 51 (118)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCC----------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888877766654322 2344555555555555555554
No 168
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=52.52 E-value=57 Score=36.50 Aligned_cols=63 Identities=14% Similarity=0.266 Sum_probs=48.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001289 1038 VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1105 (1107)
Q Consensus 1038 iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~~l~~ 1105 (1107)
-|+..+..-++.+++.++.+.++|++.|...+ .-+-+-+-+.+|.+.+.||+.++.++..|.+
T Consensus 128 ~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~-----~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~ 190 (262)
T PF14257_consen 128 EDVTEQYVDLEARLKNLEAEEERLLELLEKAK-----TVEDLLEIERELSRVRSEIEQLEGQLKYLDD 190 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777888888888888888888888543 3333555667799999999999998888764
No 169
>KOG2916 consensus Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=51.82 E-value=47 Score=36.94 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=34.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHH
Q 001289 1038 VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAK 1088 (1107)
Q Consensus 1038 iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~ 1088 (1107)
.|.++-++.|+.-++.+...|++...... +...|.-|-+.++..|+.
T Consensus 234 ldK~~g~e~l~~Ai~~i~~~I~~~~G~~~----V~~~pk~vte~d~~~l~~ 280 (304)
T KOG2916|consen 234 LDKTKGLEVLEEAIEVIISKIEEYGGTFT----VIMEPKLVTETDEAELAR 280 (304)
T ss_pred ccccccHHHHHHHHHHHHHHHHhhCCEEE----EEeCCeecccccHHHHHH
Confidence 67777888888888888888887766554 344566677777777776
No 170
>PLN02886 aminoacyl-tRNA ligase
Probab=51.30 E-value=14 Score=43.94 Aligned_cols=60 Identities=25% Similarity=0.318 Sum_probs=32.7
Q ss_pred CCcCccccccccc-chHHHHHHHHHHHh-cC---------------CCCccEEEE--cceeeCCC-C-ccccccCCC---
Q 001289 654 YPTSVLETGHDIL-FFWVARMVMLGIKL-GG---------------EVPFTKVYL--HPMIRDAH-G-RKMSKSLGN--- 709 (1107)
Q Consensus 654 yP~dl~~tG~Dil-~fW~armi~~~~~l-~g---------------~~PFk~V~~--Hg~v~D~~-G-~KMSKSlGN--- 709 (1107)
|-.++...|.||. ++=++|-++-.+.- .| .+| ..++. +..|.+.. | .|||||..|
T Consensus 183 ~~a~~VPVG~DQ~qH~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~~P-~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s 261 (389)
T PLN02886 183 YQADLVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVP-EALIPPAGARVMSLTDGTSKMSKSAPSDQS 261 (389)
T ss_pred cCCCeEEEccchHHHHHHHHHHHHHHhhhccccccccccccCCceecCC-eeccCcccceeeeCCCCCCcCCCCCCCCCC
Confidence 4456667799987 35566666544321 11 122 22221 23455553 3 699999954
Q ss_pred ccCcc
Q 001289 710 VIDPL 714 (1107)
Q Consensus 710 vIdP~ 714 (1107)
.|...
T Consensus 262 ~I~L~ 266 (389)
T PLN02886 262 RINLL 266 (389)
T ss_pred eEEec
Confidence 66443
No 171
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=51.03 E-value=38 Score=42.16 Aligned_cols=72 Identities=17% Similarity=0.228 Sum_probs=49.2
Q ss_pred cEEEEcceeeCCCCccccccCC-CccCccccccc------cCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCc
Q 001289 687 TKVYLHPMIRDAHGRKMSKSLG-NVIDPLEVING------ISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGT 759 (1107)
Q Consensus 687 k~V~~Hg~v~D~~G~KMSKSlG-NvIdP~dvI~g------~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~Ga 759 (1107)
..+.-++++++..|+|+||+.. ..+.- -.+.| .++.+|+.+ .+-+
T Consensus 314 P~~~h~~~l~~~~~~kLskk~k~~~l~~-g~~~gWdDPr~~ti~~lrrr---------------------------G~~p 365 (560)
T TIGR00463 314 PEFIHWGRLKINDVRTLSTSSKLKGIVR-GDYSGWDDPRLPTLRAVRRR---------------------------GITP 365 (560)
T ss_pred CeEEEEcceecCCCcEecchhhhhhhhc-cCccCcCCccHHHHHHHHHC---------------------------CCCH
Confidence 4888899999999999999863 11110 01111 123333332 5678
Q ss_pred hHHHHHHHhccCccccccccHHHHHHH
Q 001289 760 DALRFALVSYTAQSDKINLDIQRVVGY 786 (1107)
Q Consensus 760 DaLRf~L~~~~~~~~Dinf~~~~v~~~ 786 (1107)
+|+|-|++..+....|+.++++.+.+.
T Consensus 366 eAi~~f~~~~G~s~~~~~i~~~~l~~~ 392 (560)
T TIGR00463 366 EAIRNFMLSIGVKRNDVNLSWKNIYAF 392 (560)
T ss_pred HHHHHHHHHhCCCCCCceeeHHHHHHH
Confidence 999999999888778999999877653
No 172
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=49.75 E-value=59 Score=41.38 Aligned_cols=63 Identities=6% Similarity=0.089 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCH-HHH------HHHHHHHHHHHHHHHHHHHHHHHh
Q 001289 1041 EAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPS-RIQ------EDNAAKLAKLLQEIDFFENESNRL 1103 (1107)
Q Consensus 1041 ~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~-~v~------e~~~~Kl~~~~~el~~l~~~l~~l 1103 (1107)
.+++++|++++++++.+++.++..|++|.+-...+. .+. ++.+++++++.++-+.+++.++++
T Consensus 562 ~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~ 631 (638)
T PRK10636 562 RKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQM 631 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778999999999999999999998865333221 222 233334444444444444444443
No 173
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=49.24 E-value=14 Score=44.37 Aligned_cols=41 Identities=24% Similarity=0.367 Sum_probs=27.6
Q ss_pred cEEEECCCCCCCC-CCCchhhHHhHHHHHHHHHHHhcCCeeeeccCC
Q 001289 176 SFVIVLPPPNVTG-ALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 221 (1107)
Q Consensus 176 ~f~i~~pPPyvnG-~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~ 221 (1107)
++.+..| --||| +|||||.+. -..+.++++ .|++++++.|=
T Consensus 33 ~~~vy~G-~dPTg~slHlGhlv~---l~~l~~lQ~-~G~~~~~ligd 74 (408)
T PRK05912 33 PLRIYLG-FDPTAPSLHLGHLVP---LLKLRRFQD-AGHKPIALIGG 74 (408)
T ss_pred CCEEEEe-ecCCCCCccHHhHHH---HHHHHHHHH-CCCcEEEEEcC
Confidence 4555555 35699 599999874 245555555 68988887763
No 174
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=48.98 E-value=47 Score=40.26 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.1
Q ss_pred EEEEcceeeCCCCccccccCCC
Q 001289 688 KVYLHPMIRDAHGRKMSKSLGN 709 (1107)
Q Consensus 688 ~V~~Hg~v~D~~G~KMSKSlGN 709 (1107)
...-++++++.+|+||||..|.
T Consensus 226 ~f~H~pli~~~~g~KLSKR~g~ 247 (445)
T PRK12558 226 VFAHLSLLTGADGKGLSKRLGG 247 (445)
T ss_pred eEEEcccccCCCcccccccCCC
Confidence 6666799999999999999875
No 175
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=46.39 E-value=10 Score=43.06 Aligned_cols=43 Identities=23% Similarity=0.434 Sum_probs=27.7
Q ss_pred cEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCc
Q 001289 176 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1107)
Q Consensus 176 ~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~ 223 (1107)
++.+.++ --|||.|||||.... ..+.++++ .|++|.+..|=+|
T Consensus 5 ~~~~y~G-~~PTg~lHlG~l~~~---~~~~~lq~-~g~~~~i~iaD~~ 47 (292)
T PF00579_consen 5 PFRVYTG-IDPTGDLHLGHLVPI---MKLIWLQK-AGFKVIILIADLH 47 (292)
T ss_dssp SEEEEEE-EESSSS-BHHHHHHH---HHHHHHHH-TTSEEEEEEEHHH
T ss_pred CcEEEEe-ECCCCcccchHHHHH---HHHHHHHh-cCCccceEecchh
Confidence 3444444 246999999987764 33455555 8999988877444
No 176
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=46.09 E-value=36 Score=40.96 Aligned_cols=97 Identities=15% Similarity=0.119 Sum_probs=52.6
Q ss_pred CCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHH
Q 001289 186 VTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGG 265 (1107)
Q Consensus 186 vnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~~~~ 265 (1107)
|||.|||||.++.+-. .++.+...|+++.|... |-|-+-. .+ ..++. .++ .-
T Consensus 11 PTG~lHLGNylGaik~--~v~lq~q~~~~~~~~IA-DlHAlT~---------------~~--dp~~l----r~~----~~ 62 (431)
T PRK12284 11 TTGTPHLGNYAGAIRP--AIAASRQPGVESFYFLA-DYHALIK---------------CD--DPARI----QRS----TL 62 (431)
T ss_pred CCCcchHHHHHHHHHH--HHHHHHhCCCcEEEEee-chhhccC---------------CC--CHHHH----HHH----HH
Confidence 6999999997765432 33344345888765443 3333310 01 11111 122 23
Q ss_pred HHHHHHHHhcCccccCCccccCC-hhhHHHHHHHHHHHHHcCCEEEe
Q 001289 266 TILRQQRRLGASLDWSRECFTMD-EKRSKAVTEAFVRLYKEGLIYRD 311 (1107)
Q Consensus 266 ~i~~ql~~lG~s~DW~r~~~T~d-~~~~~~v~~~F~~L~~~GlIyr~ 311 (1107)
.+...+...|+..+=...|+-.| |.+ .-..|++..+-..|.+-|-
T Consensus 63 e~aa~~LA~GlDPek~~if~QSdvpeh-~EL~wiL~~it~~g~L~Rm 108 (431)
T PRK12284 63 EIAATWLAAGLDPERVTFYRQSDIPEI-PELTWLLTCVAGKGLLNRA 108 (431)
T ss_pred HHHHHHHHhCCCccceEEEECCcchhH-HHHHHHHHhhhhHHHHHhh
Confidence 35666777886665333344444 444 3457777777777766554
No 177
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=44.93 E-value=43 Score=41.35 Aligned_cols=72 Identities=15% Similarity=0.198 Sum_probs=44.4
Q ss_pred CCccEEEEcceeeCCCCccccccCCCccCccccccc------cCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCC
Q 001289 684 VPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVING------ISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPEC 757 (1107)
Q Consensus 684 ~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g------~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~ 757 (1107)
.|..--|.| ++.+|.||||+++...==.-+++| .|+.+|+.+ .|
T Consensus 226 ~P~~~~F~r---ln~~~~kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrr---------------------------G~ 275 (522)
T TIGR00440 226 RPAQYEFSR---LNLEGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRR---------------------------GY 275 (522)
T ss_pred CCceEEEEE---ECCCCCCcccccchhccccCcccCCCCCccccHHHHHHC---------------------------CC
Confidence 364445555 678999999999764211112222 134445444 57
Q ss_pred CchHHHHHHHhccCccccccccHHHHHH
Q 001289 758 GTDALRFALVSYTAQSDKINLDIQRVVG 785 (1107)
Q Consensus 758 GaDaLRf~L~~~~~~~~Dinf~~~~v~~ 785 (1107)
-++|||=|++..+....|...++..+..
T Consensus 276 ~PeAi~nfl~~lG~s~~~~~~e~~~l~~ 303 (522)
T TIGR00440 276 TPASIREFCNRIGVTKQDNNIEVVRLES 303 (522)
T ss_pred CHHHHHHHHHHhCCCCCCCceehhhHHH
Confidence 7899999999877654455556666554
No 178
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=43.68 E-value=77 Score=37.67 Aligned_cols=61 Identities=13% Similarity=0.208 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcCccc--------------cCC---------HHHHHHHHHHHHHHHHHHHHHH
Q 001289 1041 EAEREKIRTKLTETQKQREKLEKIINAPGYQE--------------KVP---------SRIQEDNAAKLAKLLQEIDFFE 1097 (1107)
Q Consensus 1041 ~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~--------------KaP---------~~v~e~~~~Kl~~~~~el~~l~ 1097 (1107)
..+|+.|++++..|++++..|+++|....=.. -+| ++-+.+++++++..+-+.+.|+
T Consensus 24 a~~i~~L~~ql~aLq~~v~eL~~~laa~~~aa~~gA~~~~~~~a~~~aP~~~a~~~~T~d~~~~~~qqiAn~~lKv~~l~ 103 (514)
T PF11336_consen 24 ADQIKALQAQLQALQDQVNELRAKLAAKPAAAPGGAAIGPAATAAAAAPSSDAQAGLTNDDATEMRQQIANAQLKVESLE 103 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccCCCcccccccChHHHHHHHHHHHhhhhhHHHHh
Confidence 36788999999999999999999987642111 123 5566777888888888888887
Q ss_pred HHHH
Q 001289 1098 NESN 1101 (1107)
Q Consensus 1098 ~~l~ 1101 (1107)
++.+
T Consensus 104 da~~ 107 (514)
T PF11336_consen 104 DAAE 107 (514)
T ss_pred hHHh
Confidence 7654
No 179
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=42.30 E-value=15 Score=42.76 Aligned_cols=41 Identities=20% Similarity=0.339 Sum_probs=26.8
Q ss_pred EEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCc
Q 001289 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1107)
Q Consensus 178 ~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~ 223 (1107)
.+.+| =-|||.|||||.++.... ++....|+++.+..+=.|
T Consensus 4 ~v~~G-~~PTG~~HlG~~l~~~~~----~~~~q~~~~~~i~IaD~h 44 (328)
T TIGR00233 4 RVLTG-IQPSGKMHLGHYLGAIQT----KWLQQFGVELFICIADLH 44 (328)
T ss_pred EEEEe-eCCCcHhHHHHHHHHHHH----HHHHhCCCCEEEEeecch
Confidence 34443 357999999998876442 333346888877766555
No 180
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=42.17 E-value=68 Score=40.24 Aligned_cols=37 Identities=11% Similarity=0.023 Sum_probs=28.6
Q ss_pred CCCchHHHHHHHhccCccccccccHHHHHHH-HHHHHH
Q 001289 756 ECGTDALRFALVSYTAQSDKINLDIQRVVGY-RQWCNK 792 (1107)
Q Consensus 756 ~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~-r~f~nK 792 (1107)
.|-.+++|=|+...+....+..||++.+... |+.++.
T Consensus 321 G~~peai~~f~~~~Gvsk~~~~~d~~~L~~~nr~~l~~ 358 (601)
T PTZ00402 321 GLKMEALRQFVQEQGMSKTVNFMEWSKLWYFNTQILDP 358 (601)
T ss_pred CCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHhh
Confidence 4678999999888888888999999988764 334444
No 181
>COG2348 Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]
Probab=42.05 E-value=54 Score=39.30 Aligned_cols=62 Identities=19% Similarity=0.392 Sum_probs=53.7
Q ss_pred EEEecc-ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001289 1032 VYLKVE-VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESN 1101 (1107)
Q Consensus 1032 v~l~l~-iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~ 1101 (1107)
+++.|. +|++..+.+|+.+++++..++.+.+..+... |. .++.+.++..++.+++..++.++
T Consensus 235 a~~~la~l~~~e~~~~l~~~l~~~~~~~~r~~~~l~~~------~~--~~k~~~~l~~l~~q~~~~~~~~~ 297 (418)
T COG2348 235 AELPLAYLDLDEYLKKLNQELAKLAAEIERVQEALKES------PK--SEKAQNKLNRLQMQLEAFEERIA 297 (418)
T ss_pred hhhhhhhcCHHHHHHHHHHHHHHHHhHHHHHHHHhccC------cc--hhhhhhhHHHHHHHHHhhHHHHh
Confidence 566777 9999999999999999999999999988742 33 67888899999999999988887
No 182
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=42.02 E-value=2.1e+02 Score=26.76 Aligned_cols=66 Identities=24% Similarity=0.291 Sum_probs=44.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccc-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001289 1038 VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQE-----KVPSRIQEDNAAKLAKLLQEIDFFENESNRLG 1104 (1107)
Q Consensus 1038 iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~-----KaP~~v~e~~~~Kl~~~~~el~~l~~~l~~l~ 1104 (1107)
..++.|+.+|+++|.+=..--..|++-++.+...- ..|+.+.+- -+-++-++.|+..++..+..|.
T Consensus 11 ~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keL-L~EIA~lE~eV~~LE~~v~~L~ 81 (88)
T PF14389_consen 11 SALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKEL-LEEIALLEAEVAKLEQKVLSLY 81 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999888888888888888764432 344444433 3335666677777766666553
No 183
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=41.95 E-value=67 Score=37.54 Aligned_cols=66 Identities=14% Similarity=0.108 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001289 1040 IEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1105 (1107)
Q Consensus 1040 ~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~~l~~ 1105 (1107)
.++|+++++..+..+...|+...+++++.+-.--+-++++.+.+++|..++.+...++...++|++
T Consensus 215 r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~ 280 (499)
T COG4372 215 RTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEA 280 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568889999999999999999999999988777788999999999999999999999999888874
No 184
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=41.27 E-value=16 Score=42.53 Aligned_cols=32 Identities=22% Similarity=0.432 Sum_probs=21.4
Q ss_pred CCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccC
Q 001289 185 NVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPG 220 (1107)
Q Consensus 185 yvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G 220 (1107)
-|||.|||||.++.+.+ +.+++. +++|.+..+
T Consensus 9 ~PTG~lHLG~~~g~~~~--~~~lQ~--~~~~~~~Ia 40 (333)
T PRK00927 9 QPTGKLHLGNYLGAIKN--WVELQD--EYECFFCIA 40 (333)
T ss_pred CCCccchHHhHHHHHHH--HHHHHh--cCCeEEEEe
Confidence 36999999998866432 455554 366666554
No 185
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=40.65 E-value=85 Score=39.06 Aligned_cols=31 Identities=6% Similarity=0.038 Sum_probs=26.1
Q ss_pred CCCchHHHHHHHhccCccccccccHHHHHHH
Q 001289 756 ECGTDALRFALVSYTAQSDKINLDIQRVVGY 786 (1107)
Q Consensus 756 ~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~ 786 (1107)
.|-++|+|=|++..+....|..++++.+...
T Consensus 303 G~~PeAi~nf~~~lG~s~~~~~i~~~~L~~~ 333 (554)
T PRK05347 303 GYTPESIREFCERIGVTKQDSVIDMSMLESC 333 (554)
T ss_pred CCCHHHHHHHHHHhCCCCCCCeecHHHHHHH
Confidence 5779999999999888778889998877653
No 186
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.20 E-value=1.1e+02 Score=33.98 Aligned_cols=63 Identities=13% Similarity=0.200 Sum_probs=47.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001289 1039 DIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVP----SRIQEDNAAKLAKLLQEIDFFENESNRLGN 1105 (1107)
Q Consensus 1039 D~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP----~~v~e~~~~Kl~~~~~el~~l~~~l~~l~~ 1105 (1107)
-+..||++|.|.|..--+.|-.-.++++|= |+. .++-...+++.++++.+++..-.+|++|++
T Consensus 229 ~lkeeia~Lkk~L~qkdq~ileKdkqisnL----Kad~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~~ 295 (305)
T KOG3990|consen 229 KLKEEIARLKKLLHQKDQLILEKDKQISNL----KADKEYQKELEKKHKERVQQLQKKKEESLKAIAQLRN 295 (305)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhhhhhhhcc----CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467889999988887777776667777753 232 335566778889999999999999999985
No 187
>PLN02859 glutamine-tRNA ligase
Probab=39.59 E-value=69 Score=41.37 Aligned_cols=64 Identities=17% Similarity=0.181 Sum_probs=44.7
Q ss_pred eeCCCCccccccCCCccCccccccc------cCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHh
Q 001289 695 IRDAHGRKMSKSLGNVIDPLEVING------ISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVS 768 (1107)
Q Consensus 695 v~D~~G~KMSKSlGNvIdP~dvI~g------~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~ 768 (1107)
.++.+|.||||+++...==.-+++| .|+.+|+.+ .|-++|+|=|++.
T Consensus 492 rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrr---------------------------G~~PeAi~nFi~~ 544 (788)
T PLN02859 492 RLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRR---------------------------GVTPTAINAFCRG 544 (788)
T ss_pred eECCCCCcccCcCchhccccCcccCCCCCcchhHHHHHHC---------------------------CCCHHHHHHHHHH
Confidence 6789999999999875322223333 345555544 5779999999988
Q ss_pred ccCccccc-cccHHHHHH
Q 001289 769 YTAQSDKI-NLDIQRVVG 785 (1107)
Q Consensus 769 ~~~~~~Di-nf~~~~v~~ 785 (1107)
.+....|. .++++.++.
T Consensus 545 lG~s~~~~e~i~~~~Le~ 562 (788)
T PLN02859 545 IGITRSDNSLIRMDRLEH 562 (788)
T ss_pred hCCCCCCCceecHHHHHh
Confidence 77665566 788887744
No 188
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=39.02 E-value=1.5e+02 Score=26.34 Aligned_cols=64 Identities=14% Similarity=0.324 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 001289 1041 EAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGNS 1106 (1107)
Q Consensus 1041 ~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~~l~~~ 1106 (1107)
+..++.|++++.+-.+..+..++.+.. |..+-..........+|.+...+|+.|...|..+..+
T Consensus 8 ~~~l~~L~~~l~~E~~~r~Gaenm~~~--~~~~~~~~~~~~~~~~l~es~~ki~~Lr~~L~k~~~~ 71 (72)
T cd00089 8 QSRLERLEKELSIELKVKEGAENLLRL--YSDEKKKKLLAEAEQMLRESKQKLELLKMQLEKLKQE 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456778888888888888888877752 3322222456677778888889999999888887654
No 189
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=38.25 E-value=3.9e+02 Score=26.04 Aligned_cols=38 Identities=32% Similarity=0.410 Sum_probs=24.4
Q ss_pred CEEEEEecc------ccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001289 1029 NLKVYLKVE------VDIEAEREKIRTKLTETQKQREKLEKIIN 1066 (1107)
Q Consensus 1029 ~~~v~l~l~------iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~ 1066 (1107)
.-.|++.+. .+++.-+.-+.++++.++++++.+++.+.
T Consensus 68 ~~~v~v~iG~~~~ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~ 111 (129)
T cd00890 68 DDKVLVDLGTGVYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLE 111 (129)
T ss_pred CCEEEEEecCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555544 35555567777888888877777776544
No 190
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=38.23 E-value=32 Score=38.77 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=21.4
Q ss_pred CCCcEEEECCCCCCCCCCCchhhHHh
Q 001289 173 SKPSFVIVLPPPNVTGALHIGHALTT 198 (1107)
Q Consensus 173 ~k~~f~i~~pPPyvnG~LHiGHal~~ 198 (1107)
.+++||+.++----+|++|+||...+
T Consensus 82 q~kpFyLYTGRGpSS~smHlGHliPF 107 (397)
T KOG2145|consen 82 QGKPFYLYTGRGPSSESMHLGHLIPF 107 (397)
T ss_pred cCCceEEEeCCCCCccccccccchhH
Confidence 45689999988878999999997544
No 191
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=36.96 E-value=34 Score=39.25 Aligned_cols=29 Identities=34% Similarity=0.559 Sum_probs=21.3
Q ss_pred hcCCCCccEEEEcceeeCCCCccccccCCCc
Q 001289 680 LGGEVPFTKVYLHPMIRDAHGRKMSKSLGNV 710 (1107)
Q Consensus 680 l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNv 710 (1107)
|.-..| ...-|++++|.+|+||||+.|..
T Consensus 216 Lg~~~P--~y~H~pll~~~~g~kLSKr~~~~ 244 (299)
T PRK05710 216 LGLPTP--RYLHLPLVLNADGQKLSKQNGAP 244 (299)
T ss_pred cCCCCC--eEEEeecccCCCCCcccccCCcc
Confidence 333445 45555899999999999998754
No 192
>PLN02886 aminoacyl-tRNA ligase
Probab=36.58 E-value=23 Score=41.99 Aligned_cols=29 Identities=21% Similarity=0.533 Sum_probs=19.1
Q ss_pred CCCCCCchhhHHhHHHHHHHHHHHhcCCeeeec
Q 001289 186 VTGALHIGHALTTAIQDTIIRWRRMSGYNALWV 218 (1107)
Q Consensus 186 vnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~ 218 (1107)
|||.+||||.++.+ .-+++++. |+++.+.
T Consensus 55 PSG~lHLGnylGai--~~~v~lQ~--~~~~~~~ 83 (389)
T PLN02886 55 PTGSIHLGNYLGAI--KNWVALQE--TYDTFFC 83 (389)
T ss_pred CCCccHHHHHHHHH--HHHHHHhc--cCCEEEE
Confidence 48999999977654 23444444 7776543
No 193
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=35.42 E-value=1.2e+02 Score=33.63 Aligned_cols=102 Identities=15% Similarity=0.183 Sum_probs=57.0
Q ss_pred CCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHH
Q 001289 184 PNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEY 263 (1107)
Q Consensus 184 PyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~~ 263 (1107)
++.+|.+++.+-.. -+. .+.+..+-.|-+|+...|-...+-... .+. + .-.|++|++.+.++..+|
T Consensus 33 i~~~G~l~~~~~~~-~~~-~~~~~~~~~~~kvl~sigg~~~~~~~~-~~~---------~--~~~r~~fi~~lv~~~~~~ 98 (253)
T cd06545 33 PDANGTLNANPVRS-ELN-SVVNAAHAHNVKILISLAGGSPPEFTA-ALN---------D--PAKRKALVDKIINYVVSY 98 (253)
T ss_pred ECCCCeEEecCcHH-HHH-HHHHHHHhCCCEEEEEEcCCCCCcchh-hhc---------C--HHHHHHHHHHHHHHHHHh
Confidence 45688888864211 112 233444557888887665433221110 111 1 112566766655554332
Q ss_pred HHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCE
Q 001289 264 GGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLI 308 (1107)
Q Consensus 264 ~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlI 308 (1107)
+ -=|+.+||+....+ ...|..+++++-..|...|++
T Consensus 99 ~--------~DGIdiDwE~~~~~-~~~~~~fv~~Lr~~l~~~~~~ 134 (253)
T cd06545 99 N--------LDGIDVDLEGPDVT-FGDYLVFIRALYAALKKEGKL 134 (253)
T ss_pred C--------CCceeEEeeccCcc-HhHHHHHHHHHHHHHhhcCcE
Confidence 1 23789999876443 467888888888888777754
No 194
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=35.24 E-value=3.1e+02 Score=26.45 Aligned_cols=80 Identities=20% Similarity=0.236 Sum_probs=50.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHH
Q 001289 821 FSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLR 900 (1107)
Q Consensus 821 ~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~~l~ 900 (1107)
..++-++..+..+...+..++.+.+++.++..++++. ..+.++| +.. +.+..++.+....|......+..++..+++
T Consensus 36 ~~E~~L~~~i~~~~~~i~~~~~~~~~~~l~~~l~~L~-~~~~~fy-~~v-~V~~~~~~~~~~~RL~Ll~~~~~~l~~~~~ 112 (122)
T smart00836 36 PEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLA-SAFHSFY-NKC-RVLGEENPELRAARLALLKAVRQVLANGLR 112 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHH-HHHHHHH-ccC-cccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677788888888899999999999999999885 4554444 544 233222232222344444444555666666
Q ss_pred HHh
Q 001289 901 LLH 903 (1107)
Q Consensus 901 LL~ 903 (1107)
+|.
T Consensus 113 llg 115 (122)
T smart00836 113 LLG 115 (122)
T ss_pred HcC
Confidence 664
No 195
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=34.30 E-value=1.3e+02 Score=27.72 Aligned_cols=57 Identities=12% Similarity=0.249 Sum_probs=42.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001289 1038 VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1105 (1107)
Q Consensus 1038 iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~~l~~ 1105 (1107)
-|++.+...|..|+.+++..+..+.. +++. ++.-.++++++++++....+.|..|++
T Consensus 24 kd~~~~~~~lk~Klq~ar~~i~~lpg-------i~~s----~eeq~~~i~~Le~~i~~k~~~L~~~~~ 80 (83)
T PF07544_consen 24 KDLDTATGSLKHKLQKARAAIRELPG-------IDRS----VEEQEEEIEELEEQIRKKREVLQKFKE 80 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC-------ccCC----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888887776655 2322 345566788888888888888888875
No 196
>PF04918 DltD_M: DltD central region; InterPro: IPR007002 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the central region of DltD.; PDB: 3BMA_C.
Probab=34.18 E-value=33 Score=35.79 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=12.2
Q ss_pred CCCeeEecccccccccccHHHHHHHH
Q 001289 506 SNDVVEPMIKPQWYVNCNSMAMEALY 531 (1107)
Q Consensus 506 s~~~ie~~~~~QWfv~~~~~~~~a~~ 531 (1107)
.|.-++.+++||||.+-. +...+..
T Consensus 23 k~KK~V~iiSPQWF~k~G-~~~~aF~ 47 (163)
T PF04918_consen 23 KNKKAVFIISPQWFTKKG-VDPDAFQ 47 (163)
T ss_dssp TT-EEEEE--GGG--TT--S-HHHHH
T ss_pred cCCcEEEEECCcccCCCC-cCHHHHH
Confidence 367789999999999743 4444433
No 197
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=33.90 E-value=31 Score=40.18 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=20.9
Q ss_pred CCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCc
Q 001289 186 VTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1107)
Q Consensus 186 vnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~ 223 (1107)
|||.|||||.++.+.. .++.+.-.|.++.+...=.|
T Consensus 12 PTG~~HLGnylga~k~--~~~lq~~~~~~~~~~IADlH 47 (332)
T PRK12556 12 PTGYPHLGNYIGAIKP--ALQMAKNYEGKALYFIADYH 47 (332)
T ss_pred CCCcchHHHHHHHHHH--HHHHHHhcCCeEEEEEechh
Confidence 5999999997764332 22333334655665544333
No 198
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=32.99 E-value=89 Score=36.84 Aligned_cols=60 Identities=12% Similarity=0.195 Sum_probs=44.9
Q ss_pred ecc-ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001289 1035 KVE-VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1105 (1107)
Q Consensus 1035 ~l~-iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~~l~~ 1105 (1107)
.+. |+++.||.+++.++.|++.-+++-.+ ...++++-.++|.+.+++|+.+.++.+.+.+
T Consensus 412 ~~~lv~~edeirrlkrdm~klkq~l~RN~g-----------d~v~s~~lqe~L~ev~~~Lasl~aqea~ls~ 472 (486)
T KOG2185|consen 412 GAALVEYEDEIRRLKRDMLKLKQMLNRNKG-----------DLVVSEALQERLKEVRKALASLLAQEAALSN 472 (486)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccc-----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 334 88889998888888888777665333 3457788888888888888888887777653
No 199
>PLN02627 glutamyl-tRNA synthetase
Probab=32.98 E-value=98 Score=38.38 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=22.2
Q ss_pred HHhcCCCCccEEEEcceeeCCCCccccccCCC
Q 001289 678 IKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGN 709 (1107)
Q Consensus 678 ~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGN 709 (1107)
-+|.-..| ...-+++|++.+|+||||..|.
T Consensus 271 ~aLg~~~P--~f~Hlpli~~~~g~KLSKR~~~ 300 (535)
T PLN02627 271 KALGFPMP--RFAHVSLILAPDRSKLSKRHGA 300 (535)
T ss_pred HHcCCCCC--eEEEccceeCCCCCccccccCC
Confidence 33333445 5666799999999999999864
No 200
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=32.63 E-value=1.8e+02 Score=30.10 Aligned_cols=64 Identities=17% Similarity=0.179 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccC-CH----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001289 1040 IEAEREKIRTKLTETQKQREKLEKIINAPGYQEKV-PS----------------RIQEDNAAKLAKLLQEIDFFENESNR 1102 (1107)
Q Consensus 1040 ~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~Ka-P~----------------~v~e~~~~Kl~~~~~el~~l~~~l~~ 1102 (1107)
.++++.||+.+.+.|+...+-.+.+|++..-.... .. .+-..+..+|..++++.+.|+-++++
T Consensus 73 ~e~~l~kL~Rr~~tL~ak~EL~~~RL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~L~~kKerL~y~ver 152 (153)
T PF08287_consen 73 AEKHLEKLQRREETLKAKCELQQGRLSNYESTDSSSESGESEEERLSTDPVVMKSSDEEELERLKALRQKKERLKYSVER 152 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCccccccchhhhhhccchhhcccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888888888888888778888875433322 21 23456677888888888888888776
Q ss_pred h
Q 001289 1103 L 1103 (1107)
Q Consensus 1103 l 1103 (1107)
|
T Consensus 153 L 153 (153)
T PF08287_consen 153 L 153 (153)
T ss_pred C
Confidence 4
No 201
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=32.39 E-value=1.2e+02 Score=31.67 Aligned_cols=91 Identities=16% Similarity=0.313 Sum_probs=47.9
Q ss_pred HHHHHHhcCCeeeecc-CCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCC
Q 001289 204 IIRWRRMSGYNALWVP-GMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSR 282 (1107)
Q Consensus 204 i~Ry~rm~G~~Vl~~~-G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r 282 (1107)
++||.||.||.|.|.. +.|.- ++. + ..+..+-=++|+. ...... ++|. +
T Consensus 18 LARwLRllGydt~~~~~~~d~~---i~~-i------~~~e~rIllTRDr--------------~L~~r~-k~g~-----~ 67 (165)
T COG1656 18 LARWLRLLGYDTVYSSNESDDE---IIL-I------AKKEGRILLTRDR--------------ELYKRA-KLGI-----K 67 (165)
T ss_pred HHHHHHHcCCceeeeccCCcHH---HHH-H------HhcCCeEEEeccH--------------HHHHHh-hccC-----c
Confidence 6999999999999986 55531 111 1 1111121233320 112222 4443 2
Q ss_pred ccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCccccc
Q 001289 283 ECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISD 327 (1107)
Q Consensus 283 ~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd 327 (1107)
.++--+.+..+.+.++..+|-.++ +-.-.-.=||.|++.|..
T Consensus 68 ~i~i~~~s~~~Ql~e~~~~~~l~~---~~~~e~~RCp~CN~~L~~ 109 (165)
T COG1656 68 AILIRSDSIEEQLAEFLARLGLKP---RLFPEFSRCPECNGELEK 109 (165)
T ss_pred eEEEeCCCHHHHHHHHHHHhccch---hcccccccCcccCCEecc
Confidence 334444555566666655555444 222224569999998765
No 202
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=31.90 E-value=1.7e+02 Score=31.57 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=22.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001289 1039 DIEAEREKIRTKLTETQKQREKLEKIINA 1067 (1107)
Q Consensus 1039 D~~~Ei~kL~kkl~kl~k~i~~l~~~l~~ 1067 (1107)
|-+-|..||+++|+.|...+.+.++...+
T Consensus 93 ~~dwEevrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 93 GTDWEEVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567778888888888888888888776
No 203
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=31.90 E-value=1.1e+02 Score=37.39 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=20.9
Q ss_pred cEEEEcceeeCCCCccccccCCCccCc
Q 001289 687 TKVYLHPMIRDAHGRKMSKSLGNVIDP 713 (1107)
Q Consensus 687 k~V~~Hg~v~D~~G~KMSKSlGNvIdP 713 (1107)
-..+-++++++.+|+|||||+| .++.
T Consensus 235 P~~~H~~li~~~~g~kLSKr~~-~~~~ 260 (472)
T COG0008 235 PVYAHLPLLLNEDGKKLSKRKG-AVSI 260 (472)
T ss_pred CcEEEeeeeecCCCCeecCccC-cccc
Confidence 3667779999999999999999 4433
No 204
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=31.85 E-value=53 Score=37.17 Aligned_cols=56 Identities=29% Similarity=0.332 Sum_probs=36.6
Q ss_pred CCcCcccccccccc-hHHHHHHHHHHHhcCCCCccEEEEcceeeCCC-CccccccCCCccCcccccc
Q 001289 654 YPTSVLETGHDILF-FWVARMVMLGIKLGGEVPFTKVYLHPMIRDAH-GRKMSKSLGNVIDPLEVIN 718 (1107)
Q Consensus 654 yP~dl~~tG~Dil~-fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~-G~KMSKSlGNvIdP~dvI~ 718 (1107)
.-+|....|.||-. |-+|+-..-.+ |.. =+-.+.|.||-... |.|||+| ||..-|+
T Consensus 176 L~vD~qfgGvDQRKIf~~A~eylp~l---~yk-KrihLmnpMvPGL~q~~KMSsS-----d~~SkId 233 (360)
T KOG2144|consen 176 LEVDAQFGGVDQRKIFVLAEEYLPDL---GYK-KRIHLMNPMVPGLAQGEKMSSS-----DPLSKID 233 (360)
T ss_pred HhhhHHhcCccHHHHHHHHHHhhhhh---Ccc-cceeecCCCCccccccCccccC-----Ccccccc
Confidence 45788889999854 44454433222 222 14678899998766 9999999 5555554
No 205
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=31.51 E-value=1.4e+02 Score=29.52 Aligned_cols=41 Identities=17% Similarity=0.400 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 001289 1054 TQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFEN 1098 (1107)
Q Consensus 1054 l~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~ 1098 (1107)
+.++|-.++..|+.+ ..|++|+...+..|+.++.+++.-+.
T Consensus 2 lK~riRdieRLL~r~----~Lp~~vR~~~Er~L~~L~~~l~~~~~ 42 (114)
T PF10153_consen 2 LKKRIRDIERLLKRK----DLPADVRVEKERELEALKRELEEAER 42 (114)
T ss_pred HHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888876 78999999999999999999887544
No 206
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=31.48 E-value=2.4e+02 Score=28.70 Aligned_cols=60 Identities=15% Similarity=0.334 Sum_probs=39.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001289 1039 DIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENES 1100 (1107)
Q Consensus 1039 D~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l 1100 (1107)
.+.++.+..+++++..+++++++.+.+... ....+++..+.....+.....++....+.+
T Consensus 40 ~l~~~~~~~~~~l~~~~~el~~~~~~l~~~--~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~ 99 (158)
T PF03938_consen 40 KLQEKFKALQKELQAKQKELQKLQQKLQSQ--KATLSEEERQKRQQELQQKEQELQQFQQQA 99 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS------SSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677788888888888888888865 356777777777777766666666554443
No 207
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=31.39 E-value=58 Score=40.54 Aligned_cols=73 Identities=16% Similarity=0.165 Sum_probs=50.9
Q ss_pred eCCCCccccccCCCccCccccccc------cCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhc
Q 001289 696 RDAHGRKMSKSLGNVIDPLEVING------ISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSY 769 (1107)
Q Consensus 696 ~D~~G~KMSKSlGNvIdP~dvI~g------~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~ 769 (1107)
++.+|.||||+++...==.-+++| .|+.+|+.+ .|-++|||=|++..
T Consensus 280 ln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrr---------------------------G~~peAi~~f~~~~ 332 (574)
T PTZ00437 280 LNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRR---------------------------GYTPAAINRFCELV 332 (574)
T ss_pred ecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHC---------------------------CCCHHHHHHHHHHh
Confidence 568999999999874322223333 234444444 57799999999988
Q ss_pred cCccccccccHHHHHHH-HHHHHHHHH
Q 001289 770 TAQSDKINLDIQRVVGY-RQWCNKLWN 795 (1107)
Q Consensus 770 ~~~~~Dinf~~~~v~~~-r~f~nKl~N 795 (1107)
+....|..++++.+.+. |+.+++..+
T Consensus 333 G~sk~~~~i~~~~Le~~nR~~ld~~a~ 359 (574)
T PTZ00437 333 GITRSMNVIQISMLENTLREDLDERCE 359 (574)
T ss_pred CCCccceEeeHHHHHHHHHHHhcccCc
Confidence 88778999999988764 455655443
No 208
>PLN02381 valyl-tRNA synthetase
Probab=31.20 E-value=66 Score=43.42 Aligned_cols=64 Identities=8% Similarity=0.102 Sum_probs=40.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001289 1038 VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKV--PSRIQEDNAAKLAKLLQEIDFFENESNRLG 1104 (1107)
Q Consensus 1038 iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~Ka--P~~v~e~~~~Kl~~~~~el~~l~~~l~~l~ 1104 (1107)
+++...+ -+++++++++++++++++.+.. ...+. |.=+..+-.+..+.-+++++.+++.++.++
T Consensus 987 l~l~~~i-D~~~E~~rL~K~l~klekei~~--~~~kLsN~~F~~KAP~~vve~e~~kl~~~~~~l~~l~ 1052 (1066)
T PLN02381 987 LQAQGAV-NAEAELEKLRNKMDEIQKQQEK--LEKKMNASGYKEKVPANIQEEDARKLTKLLQELEFFE 1052 (1066)
T ss_pred EECCccc-CHHHHHHHHHHHHHHHHHHHHH--HHhhhcCCchhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555444 4788899999999999988863 33333 233344445555556666666666666655
No 209
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.94 E-value=1.6e+02 Score=32.77 Aligned_cols=54 Identities=15% Similarity=0.205 Sum_probs=40.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001289 1038 VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESN 1101 (1107)
Q Consensus 1038 iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~ 1101 (1107)
.++.+|+.+++|+..+|+.+++.+++++++- ...+.+..+.++.+++.+...+.
T Consensus 53 ~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~----------~~~~~t~~~~ie~~l~~l~~~aG 106 (247)
T COG3879 53 LDLVKELRSLQKKVNTLAAEVEDLENKLDSV----------RRSVLTDDAALEDRLEKLRMLAG 106 (247)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhHHhHHHHHHHHHHHHHHHhc
Confidence 5778999999999999999999999999852 23444455556666666665543
No 210
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=30.16 E-value=32 Score=40.95 Aligned_cols=28 Identities=29% Similarity=0.704 Sum_probs=18.8
Q ss_pred CCCCCCchhhHHhHHHHHHHHHHHh-cCCeeeec
Q 001289 186 VTGALHIGHALTTAIQDTIIRWRRM-SGYNALWV 218 (1107)
Q Consensus 186 vnG~LHiGHal~~~i~D~i~Ry~rm-~G~~Vl~~ 218 (1107)
|||.+||||.++.+ + .|..| .|+++.+.
T Consensus 11 PSG~~HLGnylG~i-k----~wv~lq~~~~~~~~ 39 (398)
T PRK12283 11 PTGRLHLGHYHGVL-K----NWVKLQHEYECFFF 39 (398)
T ss_pred CCCcchHHHHHHHH-H----HHHHHhcCCcEEEE
Confidence 59999999988833 2 55554 46665443
No 211
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=29.82 E-value=2.6e+02 Score=27.03 Aligned_cols=58 Identities=21% Similarity=0.286 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-cCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001289 1041 EAEREKIRTKLTETQKQREKLEKIINA-PGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLG 1104 (1107)
Q Consensus 1041 ~~Ei~kL~kkl~kl~k~i~~l~~~l~~-~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~~l~ 1104 (1107)
..+++++..+++....+++.++.++.+ |+ .+-+..-+-.+++++.++..+++.+..+.
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt------~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPT------RDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 467788888889999999999998886 33 23455666667777777777777766554
No 212
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=29.59 E-value=1.7e+02 Score=37.24 Aligned_cols=60 Identities=20% Similarity=0.254 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001289 1043 EREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRL 1103 (1107)
Q Consensus 1043 Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~~l 1103 (1107)
+++++++++++++.+++.++..|.+|.+.+. ++.-..+-.+++++++++++.+.+.-..+
T Consensus 569 ~~~~~e~~i~~le~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 628 (635)
T PRK11147 569 ELEQLPQLLEDLEAEIEALQAQVADADFFSQ-PHEQTQKVLADLADAEQELEVAFERWEEL 628 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3889999999999999999999999865332 33234444455555555555555544433
No 213
>PRK11637 AmiB activator; Provisional
Probab=29.35 E-value=91 Score=37.61 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001289 1083 AAKLAKLLQEIDFFENESNR 1102 (1107)
Q Consensus 1083 ~~Kl~~~~~el~~l~~~l~~ 1102 (1107)
++.++.++.++..+++.|+.
T Consensus 95 ~~~i~~~~~ei~~l~~eI~~ 114 (428)
T PRK11637 95 QNTLNQLNKQIDELNASIAK 114 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 214
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=28.69 E-value=50 Score=37.45 Aligned_cols=26 Identities=31% Similarity=0.510 Sum_probs=20.0
Q ss_pred CCCccEEEEcceeeCCCCccccccCCCc
Q 001289 683 EVPFTKVYLHPMIRDAHGRKMSKSLGNV 710 (1107)
Q Consensus 683 ~~PFk~V~~Hg~v~D~~G~KMSKSlGNv 710 (1107)
..| ...-|+++++.+|+|+||+.|-.
T Consensus 212 ~~P--~y~H~pll~~~~g~kLSKR~~~~ 237 (272)
T TIGR03838 212 PPP--RYLHLPLVVNADGEKLSKQNGAP 237 (272)
T ss_pred CCC--eEEechhhhCCCCCeeeccCCcc
Confidence 445 45555899999999999998653
No 215
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.65 E-value=31 Score=39.79 Aligned_cols=46 Identities=20% Similarity=0.198 Sum_probs=28.2
Q ss_pred cEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCC-eeeeccCCCccChh
Q 001289 176 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGY-NALWVPGMDHAGIA 227 (1107)
Q Consensus 176 ~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~-~Vl~~~G~D~~Gi~ 227 (1107)
++.|++| =-|||.|||||.++.+ -.+|+.-.++ ++ |.+=.|-|.+-
T Consensus 5 ~~~vlSG-~~PSG~lHLGny~ga~----~~~v~~q~~~~~~-f~~IaDlha~t 51 (314)
T COG0180 5 KFRVLSG-IQPSGKLHLGNYLGAI----RNWVLLQEEYYEC-FFFIADLHAIT 51 (314)
T ss_pred CceEEec-CCCCCCcchhHhHHHH----HHHHHHhcccCce-EEEEecHHHhh
Confidence 4555555 3469999999998864 3455555554 54 44445655543
No 216
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=28.62 E-value=1e+02 Score=22.23 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 001289 1083 AAKLAKLLQEIDFFENESNRL 1103 (1107)
Q Consensus 1083 ~~Kl~~~~~el~~l~~~l~~l 1103 (1107)
+.+|+++++||+.+++..+..
T Consensus 4 qakla~YqaeLa~vqk~na~~ 24 (25)
T PF06696_consen 4 QAKLAQYQAELARVQKANADY 24 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 578899999999998877653
No 217
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=28.39 E-value=62 Score=34.81 Aligned_cols=56 Identities=13% Similarity=-0.020 Sum_probs=31.0
Q ss_pred cceeeCCCCccccCC-CCCCCCCChhhHHHHHHHHHHHcCCeeceeccccccceeccCCCeeEe
Q 001289 450 FINIFTDDGKINSNG-GLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEP 512 (1107)
Q Consensus 450 ~i~iid~dG~~~~~~-g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~ie~ 512 (1107)
..-+||.+|++.... ++.-.|.+. +.+++.|++. ...+.+...-|..|+-|+.++.
T Consensus 119 ~~fiID~~G~I~~~~~~~~~~gr~~----~ell~~l~~l---q~~~~~~~~~p~~w~~g~~~~~ 175 (203)
T cd03016 119 AVFIIDPDKKIRLILYYPATTGRNF----DEILRVVDAL---QLTDKHKVATPANWKPGDDVIV 175 (203)
T ss_pred EEEEECCCCeEEEEEecCCCCCCCH----HHHHHHHHHH---hhHhhcCcCcCCCCCCCCceec
Confidence 356899999975321 212234443 3344444432 2233445667999998876543
No 218
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=28.21 E-value=2.2e+02 Score=26.43 Aligned_cols=66 Identities=12% Similarity=0.243 Sum_probs=46.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001289 1039 DIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVP--SRIQEDNAAKLAKLLQEIDFFENESNRLGN 1105 (1107)
Q Consensus 1039 D~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP--~~v~e~~~~Kl~~~~~el~~l~~~l~~l~~ 1105 (1107)
.++..+..+......+..+++++...|..-......+ -+... -..||..++.++..+.+.+..++.
T Consensus 18 ~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~ 85 (92)
T PF14712_consen 18 RLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKK 85 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777778888888888888886543323333 23344 888888888888888888777653
No 219
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=28.08 E-value=48 Score=39.45 Aligned_cols=40 Identities=10% Similarity=0.105 Sum_probs=21.9
Q ss_pred EEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccC
Q 001289 177 FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPG 220 (1107)
Q Consensus 177 f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G 220 (1107)
+.+..+ -=|||.|||||..-. .--+..++ -.|++|.+..|
T Consensus 67 ~~v~~G-~~PTG~lHLG~g~i~--~~~~~~lq-~~G~~v~~~Ia 106 (383)
T PTZ00126 67 PICYDG-FEPSGRMHIAQGILK--AINVNKLT-KAGCVFVFWVA 106 (383)
T ss_pred CEEEEE-ECCCCcccccchHhH--hHHHHHHH-hCCCeEEEEEc
Confidence 344443 235999999993211 11222333 23888877666
No 220
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=27.04 E-value=1.9e+02 Score=25.62 Aligned_cols=59 Identities=19% Similarity=0.379 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001289 1044 REKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1105 (1107)
Q Consensus 1044 i~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~~l~~ 1105 (1107)
++.|.++|++=.+-++..++.+.. | ++-++.++.....++.+...+|..|+..|..+..
T Consensus 3 i~~L~~~i~~E~ki~~Gae~m~~~--~-~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~ 61 (70)
T PF02185_consen 3 IEELQKKIDKELKIKEGAENMLQA--Y-STDKKKVLSEAESQLRESNQKIELLREQLEKLQQ 61 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--H-CCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--H-ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777766777777766662 2 1122238889999999999999999999998875
No 221
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=26.91 E-value=1.6e+02 Score=35.51 Aligned_cols=30 Identities=30% Similarity=0.546 Sum_probs=23.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001289 1038 VDIEAEREKIRTKLTETQKQREKLEKIINA 1067 (1107)
Q Consensus 1038 iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~~ 1067 (1107)
+.++.+..++..+++.++.+...+.+.+..
T Consensus 33 ~~ld~~~r~~~~~~~~l~~erN~~sk~i~~ 62 (418)
T TIGR00414 33 IALDDERKKLLSEIEELQAKRNELSKQIGK 62 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888888888888888877754
No 222
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=26.81 E-value=1.3e+02 Score=29.43 Aligned_cols=48 Identities=25% Similarity=0.274 Sum_probs=33.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHH
Q 001289 1038 VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLA 1087 (1107)
Q Consensus 1038 iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~ 1087 (1107)
-|++.|++||.+-++++..+++.+...+.... ..-..++.+....-|.
T Consensus 31 ~~~~~E~~rl~~Al~~~~~eL~~l~~~~~~~~--~~~~a~If~ah~~~L~ 78 (123)
T PF05524_consen 31 DDIEAEIERLEQALEKAREELEQLAERAESKL--GEEEAAIFEAHLMMLE 78 (123)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--HSSCTHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHhc
Confidence 38899999999999999999999998854321 1112245555444443
No 223
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=26.78 E-value=1.4e+02 Score=37.29 Aligned_cols=66 Identities=12% Similarity=0.244 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001289 1040 IEAEREKIRTKLTETQKQREKLEKIINAPGYQEK---VPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1105 (1107)
Q Consensus 1040 ~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~K---aP~~v~e~~~~Kl~~~~~el~~l~~~l~~l~~ 1105 (1107)
++.+++.+++++.+|+.+++++...+..+--.++ +-+.-++.-+.+|.+-..+++.|+..|+.+++
T Consensus 441 L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 441 LKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555442211111 22333444555666666666677777766664
No 224
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=26.72 E-value=1.3e+02 Score=36.25 Aligned_cols=30 Identities=33% Similarity=0.581 Sum_probs=24.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001289 1038 VDIEAEREKIRTKLTETQKQREKLEKIINA 1067 (1107)
Q Consensus 1038 iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~~ 1067 (1107)
+.++++..++..+++.++.+...+.+.+..
T Consensus 31 ~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 31 LELDEERRELQTELEELQAERNALSKEIGQ 60 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888888888887764
No 225
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=26.45 E-value=1.2e+02 Score=34.17 Aligned_cols=59 Identities=7% Similarity=0.090 Sum_probs=38.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcc----------ccCCHHHHHHHHHHHHHHHHHHHHH
Q 001289 1038 VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQ----------EKVPSRIQEDNAAKLAKLLQEIDFF 1096 (1107)
Q Consensus 1038 iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~----------~KaP~~v~e~~~~Kl~~~~~el~~l 1096 (1107)
-++..+|+.|+++++.-+.+++++.+...+.+-. .-+-++.+++|++.+.+|+.++..+
T Consensus 190 ~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~~~L 258 (259)
T PF08657_consen 190 NQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERKKREL 258 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 5777888899988888888888887666654321 0134455566666666666655543
No 226
>COG1937 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.32 E-value=2.7e+02 Score=26.26 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcCccc
Q 001289 1041 EAEREKIRTKLTETQKQREKLEKIINAPGYQE 1072 (1107)
Q Consensus 1041 ~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~ 1072 (1107)
.++.+++-.++.+++.++..+.+++.+..|..
T Consensus 5 ~~~kkkl~~RlrRi~GQv~gI~rMlEe~~~C~ 36 (89)
T COG1937 5 IEEKKKLLNRLRRIEGQVRGIERMLEEDRDCI 36 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHH
Confidence 46788999999999999999999999998864
No 227
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=26.19 E-value=2.7e+02 Score=33.03 Aligned_cols=61 Identities=16% Similarity=0.302 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Q 001289 1042 AEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQ----------EDNAAKLAKLLQEIDFFENESNR 1102 (1107)
Q Consensus 1042 ~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~----------e~~~~Kl~~~~~el~~l~~~l~~ 1102 (1107)
+-..+|=|+++||+.+..-|++|+..|.-..-.|.+|- +.+..-...+++|++++...+..
T Consensus 201 alvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~ 271 (552)
T KOG2129|consen 201 ALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSR 271 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33468999999999999999999988865555566654 23333334456666666555443
No 228
>PRK11637 AmiB activator; Provisional
Probab=25.92 E-value=1.1e+02 Score=36.77 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001289 1081 DNAAKLAKLLQEIDFFENESN 1101 (1107)
Q Consensus 1081 ~~~~Kl~~~~~el~~l~~~l~ 1101 (1107)
...++++.++.+|..+++.|+
T Consensus 100 ~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 100 QLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433
No 229
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=25.67 E-value=1.5e+02 Score=28.40 Aligned_cols=65 Identities=20% Similarity=0.390 Sum_probs=39.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccc-CCHHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Q 001289 1038 VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEK-VPSRIQ---EDNAAKLAKLLQEIDFFENESNRL 1103 (1107)
Q Consensus 1038 iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~K-aP~~v~---e~~~~Kl~~~~~el~~l~~~l~~l 1103 (1107)
++++.+...+..+++.++.+...+.+.+.... ..+ -.++.+ ..-++++.++++++..+++.+..+
T Consensus 32 ~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~-~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 32 IELDQERRELQQELEELRAERNELSKEIGKLK-KAGEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh-hCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888888888888887766432 111 122222 223455556666666666555543
No 230
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=25.64 E-value=1.6e+02 Score=35.94 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 001289 1080 EDNAAKLAKLLQEIDFFENESNRLG 1104 (1107)
Q Consensus 1080 e~~~~Kl~~~~~el~~l~~~l~~l~ 1104 (1107)
+..++|++++++|++.|+++++.+.
T Consensus 100 ~dle~KIkeLEaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 100 GDDQRRIEKLGQDNAALAEQVKALG 124 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3457788888999988888876543
No 231
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=25.49 E-value=50 Score=42.10 Aligned_cols=41 Identities=12% Similarity=0.151 Sum_probs=22.9
Q ss_pred CcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHH-hcCCeeeeccC
Q 001289 175 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRR-MSGYNALWVPG 220 (1107)
Q Consensus 175 ~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~r-m~G~~Vl~~~G 220 (1107)
+++.+.+| -=|||.|||||. ++. .+..+.. -.|++|.+..+
T Consensus 31 ~~~rv~sG-i~PTG~lHLGng---~~~-aik~~~~~q~g~~~~~lIA 72 (682)
T PTZ00348 31 PLIRCYDG-FEPSGRMHIAQG---IFK-AVNVNKCTQAGCEFVFWVA 72 (682)
T ss_pred CCCEEEEe-eCCCCcCeeccH---HHH-HHHHHHHHhCCCeEEEEEc
Confidence 34555555 346999999993 222 2222222 35887665443
No 232
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=25.21 E-value=1.7e+02 Score=29.93 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001289 1080 EDNAAKLAKLLQEIDFFENESN 1101 (1107)
Q Consensus 1080 e~~~~Kl~~~~~el~~l~~~l~ 1101 (1107)
.....++....+|+.++...+.
T Consensus 104 ~~~~~~~k~~kee~~klk~~~~ 125 (151)
T PF11559_consen 104 KSLEAKLKQEKEELQKLKNQLQ 125 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 233
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.93 E-value=2.2e+02 Score=32.15 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001289 1079 QEDNAAKLAKLLQEIDFFENESNR 1102 (1107)
Q Consensus 1079 ~e~~~~Kl~~~~~el~~l~~~l~~ 1102 (1107)
+.+..+.+..++.+|+.+++.|..
T Consensus 75 i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 75 IDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666665544
No 234
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=24.89 E-value=2.3e+02 Score=26.55 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=15.9
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001289 1070 YQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRL 1103 (1107)
Q Consensus 1070 f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~~l 1103 (1107)
|+..-.+++.+.-.++.+.++.++..++..+..+
T Consensus 55 fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l 88 (106)
T PF01920_consen 55 FVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYL 88 (106)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444555555555555555544444433
No 235
>PRK13599 putative peroxiredoxin; Provisional
Probab=24.82 E-value=58 Score=35.54 Aligned_cols=52 Identities=19% Similarity=0.068 Sum_probs=27.9
Q ss_pred CccceeeCCCCccccCC-CCCCCCCChhhHHHHHHHHHHHcCCeeceeccccccceeccC
Q 001289 448 LEFINIFTDDGKINSNG-GLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRS 506 (1107)
Q Consensus 448 L~~i~iid~dG~~~~~~-g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~~~~~~~p~c~Rs 506 (1107)
++..-|||.+|++.... .+.-.|-.. +.|++.|+.. .....+...-|..|+-
T Consensus 119 ~R~tfIID~dG~Ir~~~~~p~~~gr~~----~eilr~l~~l---q~~~~~~~~~p~~w~~ 171 (215)
T PRK13599 119 VRAVFIVDDKGTIRLIMYYPQEVGRNV----DEILRALKAL---QTADQYGVALPEKWPN 171 (215)
T ss_pred eeEEEEECCCCEEEEEEEcCCCCCCCH----HHHHHHHHHh---hhhhhcCCCcCCCCCC
Confidence 45667999999975321 112234322 3444555442 2233345566888986
No 236
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=24.70 E-value=6.3e+02 Score=24.28 Aligned_cols=29 Identities=31% Similarity=0.469 Sum_probs=21.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001289 1038 VDIEAEREKIRTKLTETQKQREKLEKIIN 1066 (1107)
Q Consensus 1038 iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~ 1066 (1107)
.+++.-++.+.+++..++++++++++.+.
T Consensus 73 ~s~~eA~~~l~~r~~~l~~~~~~l~~~~~ 101 (120)
T PF02996_consen 73 MSLEEAIEFLKKRIKELEEQLEKLEKELA 101 (120)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777888888888888887776544
No 237
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=24.46 E-value=72 Score=36.92 Aligned_cols=51 Identities=29% Similarity=0.372 Sum_probs=28.9
Q ss_pred cccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCcc
Q 001289 658 VLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVI 711 (1107)
Q Consensus 658 l~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvI 711 (1107)
-.+=|.|.+.. -.+.+.+.-+|.-..| ...-|.+++|.+|+|+||+.|..-
T Consensus 202 HViRG~D~l~~-t~~Q~~L~~~Lg~~~P--~~~H~pl~l~~~g~kLSKR~~~~~ 252 (314)
T PF00749_consen 202 HVIRGEDLLSS-TPRQILLYEALGWPPP--PYAHLPLILNEDGKKLSKRKGAKS 252 (314)
T ss_dssp EEEEEGGGTTC-HHHHHHHHHHCTSSS---EEEEEEEEEETTSSBSSTTCSHHB
T ss_pred eEEEccccccc-cHHHHHHHHHhCCCCc--ceEeeeeeecCCCcEechhhcccc
Confidence 34446675542 2222222223322223 445558899999999999987653
No 238
>PRK10884 SH3 domain-containing protein; Provisional
Probab=24.23 E-value=1.9e+02 Score=31.50 Aligned_cols=22 Identities=0% Similarity=0.191 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001289 1042 AEREKIRTKLTETQKQREKLEK 1063 (1107)
Q Consensus 1042 ~Ei~kL~kkl~kl~k~i~~l~~ 1063 (1107)
..+.++++++++++.+++.+..
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~ 114 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDN 114 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555555544444443
No 239
>PLN02678 seryl-tRNA synthetase
Probab=24.05 E-value=1.7e+02 Score=35.70 Aligned_cols=30 Identities=20% Similarity=0.312 Sum_probs=23.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001289 1038 VDIEAEREKIRTKLTETQKQREKLEKIINA 1067 (1107)
Q Consensus 1038 iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~~ 1067 (1107)
+.++.+..++..+++.++.+...+.+.+..
T Consensus 36 l~ld~~~r~l~~~~e~lr~erN~~sk~I~~ 65 (448)
T PLN02678 36 IALDKEWRQRQFELDSLRKEFNKLNKEVAK 65 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888888888888888877753
No 240
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=23.81 E-value=2e+02 Score=35.05 Aligned_cols=37 Identities=22% Similarity=0.402 Sum_probs=21.8
Q ss_pred EEEEEecc-ccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001289 1030 LKVYLKVE-VDIEAEREKIRTKLTETQKQREKLEKIIN 1066 (1107)
Q Consensus 1030 ~~v~l~l~-iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~ 1066 (1107)
..+.+-+. -++.+++.+|.+++.+++.+++++++.+.
T Consensus 321 T~i~vg~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~ 358 (451)
T PF03961_consen 321 TEIEVGVDRPELKEKLEELEEELEELKEELEKLKKNLK 358 (451)
T ss_pred EEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444333 34556666777777777766666666654
No 241
>PLN02320 seryl-tRNA synthetase
Probab=23.72 E-value=1.8e+02 Score=35.92 Aligned_cols=30 Identities=3% Similarity=0.216 Sum_probs=25.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001289 1038 VDIEAEREKIRTKLTETQKQREKLEKIINA 1067 (1107)
Q Consensus 1038 iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~~ 1067 (1107)
+.++.+..++..+++.++.+...+.+.+..
T Consensus 96 ~~ld~~~r~~~~~~~~lr~ern~~sk~i~~ 125 (502)
T PLN02320 96 LELYENMLALQKEVERLRAERNAVANKMKG 125 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677888888888899998888888888864
No 242
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=23.65 E-value=7.5e+02 Score=24.75 Aligned_cols=29 Identities=28% Similarity=0.390 Sum_probs=23.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001289 1038 VDIEAEREKIRTKLTETQKQREKLEKIIN 1066 (1107)
Q Consensus 1038 iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~ 1066 (1107)
.+++.-+.-|.++++.+.+.++.+.+.+.
T Consensus 90 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~ 118 (140)
T PRK03947 90 KDLDEAIEILDKRKEELEKALEKLEEALQ 118 (140)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777788888888888888888887665
No 243
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=23.58 E-value=2.8e+02 Score=29.41 Aligned_cols=59 Identities=15% Similarity=0.314 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001289 1045 EKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1105 (1107)
Q Consensus 1045 ~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~~l~~ 1105 (1107)
+-|+.+++.+..+++.|+..++.-. +++--=-.-+.+..++++.+.|..|++.|+.++.
T Consensus 88 ~lLe~~~~~l~~ri~eLe~~l~~ka--d~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 88 EQLEAQLNTITRRLDELERQLQQKA--DDVVSYQLLQHRREMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555555554321 1111112356677788888999999998888765
No 244
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.58 E-value=2.2e+02 Score=32.20 Aligned_cols=60 Identities=13% Similarity=0.204 Sum_probs=35.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001289 1039 DIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1105 (1107)
Q Consensus 1039 D~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~~l~~ 1105 (1107)
+-+.++.-+++....++++|+.|...+..- ..-++..+++..+.+++++.++..|+.+++
T Consensus 35 ~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~-------~~k~~~~~~~i~~~~~eik~l~~eI~~~~~ 94 (265)
T COG3883 35 NQDSKLSELQKEKKNIQNEIESLDNQIEEI-------QSKIDELQKEIDQSKAEIKKLQKEIAELKE 94 (265)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666665555421 123445566677777777777777776653
No 245
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=23.31 E-value=60 Score=39.62 Aligned_cols=27 Identities=41% Similarity=0.551 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHHHcCCEEEeeeee
Q 001289 289 EKRSKAVTEAFVRLYKEGLIYRDLRLV 315 (1107)
Q Consensus 289 ~~~~~~v~~~F~~L~~~GlIyr~~~~V 315 (1107)
..|...|.++|.-||.+|.|||+.+|-
T Consensus 523 rF~~acv~EAfeYLH~k~iIYRDLKPE 549 (732)
T KOG0614|consen 523 RFYVACVLEAFEYLHRKGIIYRDLKPE 549 (732)
T ss_pred hhhHHHHHHHHHHHHhcCceeccCChh
Confidence 467888999999999999999999763
No 246
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=23.03 E-value=3.1e+02 Score=29.68 Aligned_cols=30 Identities=20% Similarity=0.432 Sum_probs=26.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001289 1038 VDIEAEREKIRTKLTETQKQREKLEKIINA 1067 (1107)
Q Consensus 1038 iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~~ 1067 (1107)
-++.+|..+|..-|.+++.+++.|++.|.+
T Consensus 51 ~ei~~eN~~L~epL~~a~~e~~eL~k~L~~ 80 (201)
T PF13851_consen 51 AEISQENKRLSEPLKKAEEEVEELRKQLKN 80 (201)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 467788889999999999999999999885
No 247
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=23.03 E-value=3.8e+02 Score=23.82 Aligned_cols=51 Identities=16% Similarity=0.342 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001289 1040 IEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLG 1104 (1107)
Q Consensus 1040 ~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~~l~ 1104 (1107)
++.-+..|+-+++..+..++.|.. |+-+-...+..++.++..+.+.+..+.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~--------------~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELND--------------VVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566777777777777776664 555566667777777777777777665
No 248
>PLN02907 glutamate-tRNA ligase
Probab=22.49 E-value=2.2e+02 Score=36.92 Aligned_cols=37 Identities=11% Similarity=0.106 Sum_probs=28.3
Q ss_pred CCCchHHHHHHHhccCccccccccHHHHHHH-HHHHHH
Q 001289 756 ECGTDALRFALVSYTAQSDKINLDIQRVVGY-RQWCNK 792 (1107)
Q Consensus 756 ~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~-r~f~nK 792 (1107)
.|-+++||=++...+....+..|+++.+... |+.++.
T Consensus 481 G~~~eai~~f~~~~g~s~~~~~~~~~~l~~~nr~~id~ 518 (722)
T PLN02907 481 GLKIEALKQFILSQGASKNLNLMEWDKLWTINKKIIDP 518 (722)
T ss_pred CCCHHHHHHHHHHhCCCcCCccccHHHHHHHHHHHhcc
Confidence 4778999999988888778999999888764 334443
No 249
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=22.35 E-value=3e+02 Score=29.52 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001289 1042 AEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLG 1104 (1107)
Q Consensus 1042 ~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~~l~ 1104 (1107)
.|+.++-.+++.++++++.+++.+. .| ....++.++..++....+...+.+...-|-.++
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~--~~-~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~ 162 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELE--KY-SENDPEKIEKLKEEIKIAKEAANRWTDNIFSLK 162 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HH-HhcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 5666777777788888888888777 45 345667888888888888888888887776654
No 250
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=22.09 E-value=2e+02 Score=34.89 Aligned_cols=68 Identities=12% Similarity=0.101 Sum_probs=47.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001289 1038 VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1105 (1107)
Q Consensus 1038 iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~~l~~ 1105 (1107)
-|..+--+++..++.+.+..+.+.+.+++.=+-.-|--...+..+-++-..++.+.+.+|.+|..++.
T Consensus 38 ed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d 105 (604)
T KOG3564|consen 38 EDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKD 105 (604)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 46666667777788888888888888777543333334456666777777788888888888877664
No 251
>PF10653 Phage-A118_gp45: Protein gp45 of Bacteriophage A118; InterPro: IPR018915 The proteins in this entry represents Gp45 in Listeria phage A118 (Bacteriophage A118) and related proteins; Gp45 is thought to have a function in the phage tail-fibre system.
Probab=22.07 E-value=66 Score=26.83 Aligned_cols=34 Identities=26% Similarity=0.624 Sum_probs=27.4
Q ss_pred HHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHH
Q 001289 1059 EKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEID 1094 (1107)
Q Consensus 1059 ~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~ 1094 (1107)
....++++||.|.+|.| ++|.-=+|+.++.+|++
T Consensus 20 ~~rtkmianpaf~qkip--lietgcekm~dyieelk 53 (62)
T PF10653_consen 20 NDRTKMIANPAFQQKIP--LIETGCEKMTDYIEELK 53 (62)
T ss_pred cchHHHhcCHHHHhccc--hhhhhhHHHHHHHHHHh
Confidence 45567899999999998 56777788888888765
No 252
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=21.83 E-value=2.3e+02 Score=36.90 Aligned_cols=37 Identities=16% Similarity=0.031 Sum_probs=29.6
Q ss_pred CCCchHHHHHHHhccCccccccccHHHHHHH-HHHHHH
Q 001289 756 ECGTDALRFALVSYTAQSDKINLDIQRVVGY-RQWCNK 792 (1107)
Q Consensus 756 ~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~-r~f~nK 792 (1107)
.|-++|+|-|++..+....|..++++.+... |+.++.
T Consensus 306 G~~peAi~~f~~~lG~s~~~~~i~~~~L~~~~R~~ld~ 343 (771)
T PRK14703 306 GVTPEAIRDFADQIGVAKTNSTVDIGVLEFAIRDDLNR 343 (771)
T ss_pred CCCHHHHHHHHHHhCCCccCceecHHHHHHHHHHHhcc
Confidence 5779999999998888778999999988764 445554
No 253
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=21.58 E-value=3.9e+02 Score=24.21 Aligned_cols=54 Identities=24% Similarity=0.285 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001289 1042 AEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNR 1102 (1107)
Q Consensus 1042 ~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~~ 1102 (1107)
.|-++|.++--+....|.+|+..+..- +.-+..-..+++....++..++..+..
T Consensus 19 eEGekLSk~el~~~~~IKKLr~~~~e~-------e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 19 EEGEKLSKKELKLNNTIKKLRAKIKEL-------EKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455677777777777777777766532 345556667777777777777666543
No 254
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.43 E-value=75 Score=37.45 Aligned_cols=59 Identities=22% Similarity=0.152 Sum_probs=38.3
Q ss_pred CCcCcccccccccchHHHHHHHHHHHh----cCCCCccEEEEcceeeCCCCccccccCCCccCccccc
Q 001289 654 YPTSVLETGHDILFFWVARMVMLGIKL----GGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVI 717 (1107)
Q Consensus 654 yP~dl~~tG~Dil~fW~armi~~~~~l----~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI 717 (1107)
|-..+.+.|.||.-.- +.|..+ .+..-+--=++-.++.+..|.|+-||-||.|+.+--+
T Consensus 226 ~g~~~QlGGsDQwGNi-----taG~dlI~ki~~~~~~vfGlT~PLlTsstG~KlGKSaGnAvWLdp~~ 288 (467)
T KOG2623|consen 226 YGCRFQLGGSDQWGNI-----TAGTDLIRKIMPIQAFVFGLTFPLLTSSTGAKLGKSAGNAVWLDPSK 288 (467)
T ss_pred cCeeEEeccccccccc-----chHHHHHHHhcccccceeeeeeeeEecCcchhhccCCCceEEecCcc
Confidence 4567888999986431 222222 1110122235667888999999999999999876544
No 255
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=21.24 E-value=3.4e+02 Score=31.49 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 001289 1045 EKIRTKLTETQKQREKLEKIIN 1066 (1107)
Q Consensus 1045 ~kL~kkl~kl~k~i~~l~~~l~ 1066 (1107)
.++..+.+.+..++..+++...
T Consensus 180 ~~l~~~~~~L~~e~~~Lk~~~~ 201 (325)
T PF08317_consen 180 PKLRERKAELEEELENLKQLVE 201 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444455544444433
No 256
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=21.23 E-value=48 Score=38.72 Aligned_cols=15 Identities=40% Similarity=0.645 Sum_probs=12.2
Q ss_pred CCCCCCchhhHHhHH
Q 001289 186 VTGALHIGHALTTAI 200 (1107)
Q Consensus 186 vnG~LHiGHal~~~i 200 (1107)
|||.+||||.++.+.
T Consensus 11 PTG~~HLGn~l~~~~ 25 (333)
T PRK12282 11 PTGKLHLGHYVGSLK 25 (333)
T ss_pred CCCcchHHHHHHHHH
Confidence 489999999887543
No 257
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=20.78 E-value=1.9e+02 Score=25.68 Aligned_cols=30 Identities=20% Similarity=0.399 Sum_probs=24.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001289 1038 VDIEAEREKIRTKLTETQKQREKLEKIINA 1067 (1107)
Q Consensus 1038 iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~~ 1067 (1107)
.....+++.+++++++++++.+.++..+..
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888888877663
No 258
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=20.48 E-value=4.2e+02 Score=27.61 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC----cCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001289 1046 KIRTKLTETQKQREKLEKIINA----PGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNR 1102 (1107)
Q Consensus 1046 kL~kkl~kl~k~i~~l~~~l~~----~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~~ 1102 (1107)
+..++..++++|+.++.+.+++ +.|. --.+.++|+.++++|++++++.+..
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFA------kwaKl~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAISAQDEFA------KWAKLNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-TTTSHH------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555554 2342 2345688889999999988887654
No 259
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=20.19 E-value=2.8e+02 Score=35.46 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001289 1040 IEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENES 1100 (1107)
Q Consensus 1040 ~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l 1100 (1107)
..+++..+.+++.+++.+++.++++|+... .++.++.-.+++.+++.++..++..+
T Consensus 389 ~~~~~~~~~~~~~~~e~el~~l~~~l~~~~-----~~e~i~~l~e~l~~l~~~l~~~~~~~ 444 (650)
T TIGR03185 389 LQDAKSQLLKELRELEEELAEVDKKISTIP-----SEEQIAQLLEELGEAQNELFRSEAEI 444 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888999999999999999987521 11344444444554444444444433
No 260
>PRK10884 SH3 domain-containing protein; Provisional
Probab=20.05 E-value=4.1e+02 Score=28.93 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=18.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001289 1039 DIEAEREKIRTKLTETQKQREKLEKIIN 1066 (1107)
Q Consensus 1039 D~~~Ei~kL~kkl~kl~k~i~~l~~~l~ 1066 (1107)
.+++|+++|+.+++.+..+.+.....|+
T Consensus 97 ~le~el~~l~~~l~~~~~~~~~~~~~l~ 124 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTWNQRTAEMQ 124 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5677777777777777666555544443
No 261
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=20.03 E-value=2.9e+02 Score=28.23 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=21.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001289 1038 VDIEAEREKIRTKLTETQKQREKLEKIINA 1067 (1107)
Q Consensus 1038 iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~~ 1067 (1107)
...+.||.-|++++..++.++++++..|..
T Consensus 31 ~~~E~EI~sL~~K~~~lE~eld~~~~~l~~ 60 (143)
T PF12718_consen 31 EQKEQEITSLQKKNQQLEEELDKLEEQLKE 60 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777777763
Done!