Query 001289
Match_columns 1107
No_of_seqs 472 out of 3185
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 20:27:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001289.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001289hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gax_A Valrs, valyl-tRNA synth 100.0 5E-196 2E-200 1828.1 76.2 853 143-1104 3-862 (862)
2 1ffy_A Isoleucyl-tRNA syntheta 100.0 2E-165 6E-170 1563.7 50.9 791 125-1011 6-862 (917)
3 1ile_A Ilers, isoleucyl-tRNA s 100.0 2E-161 6E-166 1521.8 48.2 743 145-967 6-819 (821)
4 1wz2_A Leucyl-tRNA synthetase; 100.0 1E-144 5E-149 1384.5 51.7 743 145-988 2-871 (967)
5 4arc_A Leucine--tRNA ligase; l 100.0 4E-136 1E-140 1280.2 52.0 649 141-939 19-812 (880)
6 2v0c_A Aminoacyl-tRNA syntheta 100.0 1E-133 3E-138 1268.3 53.8 667 146-962 3-829 (878)
7 1wkb_A Leucyl-tRNA synthetase; 100.0 1E-129 5E-134 1232.4 53.0 682 145-918 2-810 (810)
8 3u1f_A Methionyl-tRNA syntheta 100.0 4.6E-93 1.6E-97 863.6 31.2 471 173-919 7-499 (542)
9 1rqg_A Methionyl-tRNA syntheta 100.0 8.3E-91 2.8E-95 864.2 33.8 492 175-919 2-521 (722)
10 3h99_A Methionyl-tRNA syntheta 100.0 2.5E-87 8.4E-92 815.4 27.7 489 172-919 15-521 (560)
11 2x1l_A Methionyl-tRNA syntheta 100.0 9.5E-86 3.2E-90 796.2 32.9 469 172-920 9-492 (524)
12 4dlp_A Aminoacyl-tRNA syntheta 100.0 1.9E-85 6.4E-90 794.9 33.9 465 173-920 23-499 (536)
13 3kfl_A Methionyl-tRNA syntheta 100.0 4.9E-85 1.7E-89 794.3 31.0 479 163-919 14-515 (564)
14 2d5b_A Methionyl-tRNA syntheta 100.0 3E-84 1E-88 779.0 26.7 458 174-919 2-469 (500)
15 2csx_A Methionyl-tRNA syntheta 100.0 6.6E-82 2.3E-86 758.0 24.6 455 174-919 4-468 (497)
16 3tqo_A Cysteinyl-tRNA syntheta 100.0 1.2E-42 4.2E-47 407.5 20.6 347 176-867 25-373 (462)
17 3sp1_A Cysteinyl-tRNA syntheta 100.0 4.1E-41 1.4E-45 396.1 19.6 352 175-857 43-412 (501)
18 3c8z_A Cysteinyl-tRNA syntheta 100.0 5.3E-40 1.8E-44 384.8 26.2 139 655-857 244-385 (414)
19 1li5_A Cysrs, cysteinyl-tRNA s 100.0 2.8E-38 9.6E-43 374.1 21.7 346 175-868 23-372 (461)
20 1wka_A Valyl-tRNA synthetase; 100.0 3.9E-37 1.3E-41 309.8 15.6 139 353-496 4-146 (147)
21 1wny_A Isoleucyl-tRNA syntheta 100.0 1.6E-33 5.6E-38 294.7 13.6 140 356-499 6-186 (186)
22 2ajg_A Leucyl-tRNA synthetase; 100.0 6.5E-31 2.2E-35 277.2 13.3 138 353-492 10-194 (196)
23 3o0a_A Leucyl-tRNA synthetase 100.0 1.7E-30 5.7E-35 277.7 12.0 128 367-496 38-217 (219)
24 3fnr_A Arginyl-tRNA synthetase 100.0 1.1E-26 3.9E-31 273.7 33.9 197 658-904 239-448 (464)
25 2wfg_A Cytosolic leucyl-tRNA s 99.9 2.5E-28 8.5E-33 267.7 10.7 136 363-500 29-256 (261)
26 2wfd_A Leucyl-tRNA synthetase, 99.9 6.1E-27 2.1E-31 255.8 14.2 126 364-493 27-250 (252)
27 1iq0_A Arginyl-tRNA synthetase 99.9 1.1E-25 3.7E-30 274.5 25.5 194 688-903 381-585 (592)
28 3pz6_A Leurs, leucyl-tRNA synt 99.9 2.6E-26 9E-31 250.8 10.5 156 319-494 48-305 (311)
29 2zue_A Arginyl-tRNA synthetase 99.9 1.1E-23 3.6E-28 257.9 28.3 191 688-903 411-622 (629)
30 1irx_A Lysyl-tRNA synthetase; 99.9 1.2E-23 4.1E-28 253.4 5.2 124 177-310 21-152 (523)
31 1f7u_A Arginyl-tRNA synthetase 99.7 6.1E-16 2.1E-20 188.2 31.8 133 174-312 142-319 (607)
32 3aii_A Glutamyl-tRNA synthetas 98.8 2.2E-08 7.6E-13 119.1 12.5 94 178-310 97-190 (553)
33 2cfo_A Glutamyl-tRNA synthetas 98.6 3.6E-07 1.2E-11 108.5 14.4 89 183-310 7-96 (492)
34 2ja2_A Glutamyl-tRNA synthetas 98.5 1.3E-06 4.6E-11 103.5 18.1 91 183-312 12-111 (498)
35 1nzj_A Hypothetical protein YA 97.8 1.3E-05 4.6E-10 89.3 5.5 91 183-312 11-102 (298)
36 2o5r_A Glutamyl-tRNA synthetas 97.8 3.5E-05 1.2E-09 91.4 8.9 97 176-311 12-117 (481)
37 3al0_C Glutamyl-tRNA(Gln) amid 97.7 7.6E-05 2.6E-09 90.5 9.9 97 176-312 129-234 (592)
38 4g6z_A Glutamate-tRNA ligase; 97.6 9.7E-05 3.3E-09 87.3 8.5 93 181-312 29-122 (490)
39 1qtq_A GLNRS, protein (glutami 97.5 0.00018 6.2E-09 85.8 10.2 95 178-310 27-121 (553)
40 2hz7_A Glutaminyl-tRNA synthet 97.4 0.00027 9.3E-09 87.9 9.8 95 178-310 67-161 (851)
41 4gri_A Glutamate--tRNA ligase; 97.3 0.00053 1.8E-08 82.1 10.0 95 183-312 30-129 (512)
42 3afh_A Glutamyl-tRNA synthetas 97.2 0.00062 2.1E-08 80.7 9.9 95 179-312 27-130 (488)
43 1j09_A Glutamyl-tRNA synthetas 97.2 0.00041 1.4E-08 81.9 8.3 91 183-312 7-106 (468)
44 2cyb_A Tyrosyl-tRNA synthetase 97.2 0.00053 1.8E-08 77.4 7.7 59 653-715 168-227 (323)
45 2g36_A Tryptophanyl-tRNA synth 94.8 0.025 8.4E-07 64.2 5.7 71 654-730 152-228 (340)
46 3tzl_A Tryptophanyl-tRNA synth 94.7 0.018 6.2E-07 64.7 4.3 61 654-715 138-205 (322)
47 1h3f_A Tyrosyl-tRNA synthetase 94.6 0.027 9.3E-07 65.8 5.6 57 655-715 187-245 (432)
48 2zp1_A Tyrosyl-tRNA synthetase 94.6 0.025 8.7E-07 63.4 5.2 54 655-716 163-218 (314)
49 2yxn_A Tyrosyl-tRNA synthetase 94.2 0.024 8.2E-07 63.8 3.7 57 655-715 191-248 (322)
50 1jil_A Tyrrs, tyrosyl-tRNA syn 94.1 0.031 1.1E-06 65.1 4.6 59 654-716 185-245 (420)
51 2ts1_A Tyrosyl-tRNA synthetase 94.0 0.028 9.7E-07 65.3 3.9 60 654-716 184-244 (419)
52 2pid_A Tyrosyl-tRNA synthetase 94.0 0.026 8.9E-07 64.3 3.5 58 655-716 210-268 (356)
53 2jan_A Tyrosyl-tRNA synthetase 93.9 0.034 1.2E-06 64.8 4.2 59 654-716 186-246 (432)
54 1y42_X Tyrosyl-tRNA synthetase 93.7 0.029 1E-06 64.7 3.3 62 655-716 232-307 (392)
55 2lw1_A ABC transporter ATP-bin 93.5 0.37 1.3E-05 43.7 9.5 60 1039-1099 19-78 (89)
56 1n3l_A Tyrosyl-tRNA synthetase 93.2 0.06 2E-06 61.8 4.8 58 654-715 177-236 (372)
57 2dlc_X Tyrosyl-tRNA synthetase 92.9 0.056 1.9E-06 62.5 4.1 58 654-715 181-241 (394)
58 1yi8_B Tryptophanyl-tRNA synth 92.9 0.066 2.3E-06 60.9 4.4 62 654-716 161-229 (351)
59 2el7_A Tryptophanyl-tRNA synth 92.6 0.074 2.5E-06 60.2 4.4 60 654-715 140-208 (337)
60 2o5r_A Glutamyl-tRNA synthetas 92.6 0.27 9.2E-06 58.2 9.4 58 657-718 220-277 (481)
61 3vgj_A Tyrosyl-tRNA synthetase 91.2 0.16 5.3E-06 58.3 5.0 58 654-715 199-261 (373)
62 1qtq_A GLNRS, protein (glutami 91.1 0.098 3.4E-06 62.5 3.3 73 686-786 252-330 (553)
63 1j09_A Glutamyl-tRNA synthetas 90.4 0.39 1.3E-05 56.6 7.5 72 660-771 204-275 (468)
64 2ip1_A Tryptophanyl-tRNA synth 90.2 0.14 4.9E-06 59.6 3.5 58 654-715 248-309 (432)
65 2yy5_A Tryptophanyl-tRNA synth 90.1 0.19 6.3E-06 57.1 4.3 61 654-715 146-218 (348)
66 3i05_A Tryptophanyl-tRNA synth 89.7 0.13 4.3E-06 59.5 2.5 56 656-715 225-283 (395)
67 2cya_A Tyrosyl-tRNA synthetase 89.7 0.25 8.5E-06 56.5 4.9 59 654-716 176-253 (364)
68 3hzr_A Tryptophanyl-tRNA synth 89.7 0.2 6.7E-06 57.6 4.1 55 657-715 226-283 (386)
69 2cyc_A Tyrosyl-tRNA synthetase 89.6 0.47 1.6E-05 54.4 7.2 72 185-278 41-113 (375)
70 1i6k_A TRPRS, tryptophanyl-tRN 89.6 0.23 7.9E-06 55.9 4.5 61 654-715 136-208 (328)
71 4arc_A Leucine--tRNA ligase; l 89.6 0.17 5.8E-06 64.2 3.7 79 475-558 154-246 (880)
72 2dlc_X Tyrosyl-tRNA synthetase 89.0 0.9 3.1E-05 52.4 9.0 71 187-283 49-119 (394)
73 3afh_A Glutamyl-tRNA synthetas 88.8 0.59 2E-05 55.3 7.4 70 661-770 217-286 (488)
74 2j5b_A Tyrosyl-tRNA synthetase 88.8 0.34 1.2E-05 54.9 5.2 57 655-715 186-246 (348)
75 1r6u_A Tryptophanyl-tRNA synth 88.7 0.24 8.3E-06 57.8 3.9 55 657-715 258-316 (437)
76 3hv0_A Tryptophanyl-tRNA synth 88.5 0.24 8.2E-06 57.1 3.7 54 658-715 223-280 (393)
77 3jxe_A Tryptophanyl-tRNA synth 88.4 0.27 9.4E-06 56.5 4.1 56 656-715 208-267 (392)
78 1r6t_A Tryptophanyl-tRNA synth 87.6 0.31 1.1E-05 57.6 3.9 55 657-715 305-363 (477)
79 3tze_A Tryptophanyl-tRNA synth 87.3 0.31 1E-05 56.4 3.6 57 655-715 243-303 (406)
80 2hz7_A Glutaminyl-tRNA synthet 87.2 0.51 1.7E-05 59.0 5.7 71 688-786 294-370 (851)
81 3p0j_A Tyrosyl-tRNA synthetase 86.3 0.54 1.8E-05 58.0 5.2 57 654-714 182-243 (690)
82 1nzj_A Hypothetical protein YA 86.3 0.41 1.4E-05 53.1 3.8 46 662-710 191-236 (298)
83 2v0c_A Aminoacyl-tRNA syntheta 84.7 0.97 3.3E-05 57.5 6.6 77 475-557 134-225 (878)
84 3al0_C Glutamyl-tRNA(Gln) amid 84.3 0.57 1.9E-05 56.8 4.0 55 660-718 320-374 (592)
85 3n9i_A Tryptophanyl-tRNA synth 83.4 0.82 2.8E-05 51.7 4.6 61 654-714 151-222 (346)
86 3foc_A Tryptophanyl-tRNA synth 82.4 0.27 9.3E-06 57.4 0.2 51 659-713 291-345 (451)
87 3sz3_A Tryptophanyl-tRNA synth 81.2 0.53 1.8E-05 53.2 2.0 62 654-715 142-217 (341)
88 2cyc_A Tyrosyl-tRNA synthetase 78.8 1.7 6E-05 49.6 5.3 27 689-715 220-265 (375)
89 1n3l_A Tyrosyl-tRNA synthetase 77.8 3.4 0.00012 47.1 7.3 38 178-220 37-74 (372)
90 4g6z_A Glutamate-tRNA ligase; 77.7 5.3 0.00018 47.1 9.0 83 661-783 226-309 (490)
91 2cyb_A Tyrosyl-tRNA synthetase 77.0 3.3 0.00011 46.3 6.8 43 176-223 32-74 (323)
92 3prh_A Tryptophanyl-tRNA synth 75.6 1.9 6.5E-05 49.5 4.4 62 654-715 170-242 (388)
93 1go4_E MAD1 (mitotic arrest de 75.5 5.5 0.00019 36.7 6.5 69 1038-1106 15-97 (100)
94 3a04_A Tryptophanyl-tRNA synth 74.4 2 6.8E-05 49.1 4.1 57 657-713 210-268 (372)
95 2ke4_A CDC42-interacting prote 72.0 12 0.00042 34.4 8.0 62 1043-1105 23-90 (98)
96 3tzl_A Tryptophanyl-tRNA synth 71.8 0.87 3E-05 51.1 0.3 36 186-226 12-47 (322)
97 3hzr_A Tryptophanyl-tRNA synth 68.2 7.9 0.00027 44.4 7.2 59 159-221 57-123 (386)
98 3a04_A Tryptophanyl-tRNA synth 67.6 1.9 6.4E-05 49.3 1.9 59 160-223 46-112 (372)
99 2cya_A Tyrosyl-tRNA synthetase 67.5 3.3 0.00011 47.1 3.9 33 185-221 43-75 (364)
100 1i6k_A TRPRS, tryptophanyl-tRN 64.4 1.9 6.5E-05 48.4 1.1 32 186-221 10-41 (328)
101 3viq_B Mating-type switching p 63.2 29 0.001 31.0 8.2 48 1039-1091 5-52 (85)
102 3hv0_A Tryptophanyl-tRNA synth 62.8 8.6 0.0003 44.1 6.2 44 175-222 73-117 (393)
103 3vgj_A Tyrosyl-tRNA synthetase 61.1 3.1 0.00011 47.5 2.1 36 186-226 65-101 (373)
104 1lrz_A FEMA, factor essential 59.4 18 0.00061 41.8 8.2 63 1033-1103 237-300 (426)
105 2el7_A Tryptophanyl-tRNA synth 58.7 3.6 0.00012 46.4 2.0 32 186-220 10-42 (337)
106 2pid_A Tyrosyl-tRNA synthetase 58.0 5.8 0.0002 45.0 3.6 42 177-223 47-89 (356)
107 3foc_A Tryptophanyl-tRNA synth 57.9 7.9 0.00027 45.2 4.8 59 159-221 66-133 (451)
108 3jxe_A Tryptophanyl-tRNA synth 57.8 3.3 0.00011 47.6 1.5 60 160-223 49-116 (392)
109 1y42_X Tyrosyl-tRNA synthetase 57.7 6.7 0.00023 45.1 4.1 34 186-223 73-107 (392)
110 2jan_A Tyrosyl-tRNA synthetase 56.8 6.2 0.00021 45.9 3.7 33 186-222 41-74 (432)
111 2yxn_A Tyrosyl-tRNA synthetase 55.3 6.9 0.00024 43.7 3.6 33 186-222 42-75 (322)
112 2ts1_A Tyrosyl-tRNA synthetase 54.6 7.9 0.00027 44.8 4.0 34 186-223 39-73 (419)
113 2g36_A Tryptophanyl-tRNA synth 53.6 6.5 0.00022 44.3 3.1 39 177-220 14-52 (340)
114 2ip1_A Tryptophanyl-tRNA synth 53.1 7.1 0.00024 45.4 3.3 58 159-220 77-143 (432)
115 1jil_A Tyrrs, tyrosyl-tRNA syn 52.6 7.9 0.00027 44.9 3.6 34 186-223 41-75 (420)
116 2zp1_A Tyrosyl-tRNA synthetase 52.4 4.7 0.00016 44.9 1.6 33 187-223 38-70 (314)
117 2yy5_A Tryptophanyl-tRNA synth 51.6 3.4 0.00011 46.8 0.3 32 186-221 13-44 (348)
118 2l5g_B Putative uncharacterize 51.5 20 0.00067 27.6 4.3 26 1040-1065 14-39 (42)
119 3p0j_A Tyrosyl-tRNA synthetase 49.2 8.4 0.00029 47.5 3.3 45 176-226 40-85 (690)
120 1r6t_A Tryptophanyl-tRNA synth 48.8 9 0.00031 45.1 3.4 61 159-223 130-199 (477)
121 3tze_A Tryptophanyl-tRNA synth 48.8 8.2 0.00028 44.5 2.9 61 159-223 76-145 (406)
122 1h3f_A Tyrosyl-tRNA synthetase 48.0 10 0.00035 44.1 3.6 34 186-223 46-80 (432)
123 4gqc_A Thiol peroxidase, perox 47.8 20 0.0007 35.3 5.4 28 301-328 28-56 (164)
124 1r6u_A Tryptophanyl-tRNA synth 46.9 9 0.00031 44.6 2.9 60 159-222 83-151 (437)
125 2j5b_A Tyrosyl-tRNA synthetase 45.3 12 0.0004 42.3 3.4 44 176-223 40-83 (348)
126 3hnw_A Uncharacterized protein 44.8 28 0.00095 34.0 5.6 67 1038-1104 64-130 (138)
127 3sz3_A Tryptophanyl-tRNA synth 42.7 5.5 0.00019 44.9 0.2 31 186-220 15-45 (341)
128 1yi8_B Tryptophanyl-tRNA synth 42.6 6.3 0.00021 44.6 0.7 29 187-220 32-61 (351)
129 1vcs_A Vesicle transport throu 39.9 83 0.0029 28.8 7.8 59 1041-1105 37-95 (102)
130 2lf0_A Uncharacterized protein 39.9 35 0.0012 32.1 5.0 50 1040-1098 8-57 (123)
131 3prh_A Tryptophanyl-tRNA synth 39.6 7.3 0.00025 44.7 0.6 41 179-225 38-78 (388)
132 3u1c_A Tropomyosin alpha-1 cha 37.3 89 0.003 28.7 7.4 59 1040-1105 42-100 (101)
133 3onj_A T-snare VTI1; helix, HA 36.8 58 0.002 29.6 6.1 57 1042-1104 34-93 (97)
134 2qyw_A Vesicle transport throu 35.8 88 0.003 28.7 7.2 54 1041-1100 48-101 (102)
135 3n9i_A Tryptophanyl-tRNA synth 34.0 8.8 0.0003 43.3 0.1 30 186-220 24-54 (346)
136 3lof_A Heat shock 70 kDa prote 32.6 1.8E+02 0.0061 26.7 9.0 42 1050-1091 10-51 (113)
137 4gri_A Glutamate--tRNA ligase; 32.4 97 0.0033 36.7 8.7 29 680-710 253-281 (512)
138 2dfs_A Myosin-5A; myosin-V, in 32.2 78 0.0027 41.1 8.4 54 1041-1104 990-1043(1080)
139 2pms_C Pneumococcal surface pr 31.5 1.2E+02 0.004 29.0 7.2 26 1042-1067 6-31 (125)
140 3i05_A Tryptophanyl-tRNA synth 31.3 17 0.00059 41.7 1.9 61 159-223 53-122 (395)
141 2lw1_A ABC transporter ATP-bin 28.5 27 0.00093 31.2 2.4 57 1046-1103 19-75 (89)
142 1l8d_A DNA double-strand break 27.6 1.8E+02 0.006 26.6 8.0 61 1041-1104 16-91 (112)
143 2pms_C Pneumococcal surface pr 27.2 2.6E+02 0.0088 26.7 8.8 59 1044-1102 63-121 (125)
144 4g2e_A Peroxiredoxin; redox pr 26.7 65 0.0022 31.1 5.0 16 313-328 38-53 (157)
145 2k48_A Nucleoprotein; viral pr 24.8 95 0.0032 28.6 5.1 61 1042-1103 35-101 (107)
146 2p32_A Heat shock 70 kDa prote 24.7 2E+02 0.0069 26.7 7.9 41 1051-1091 20-60 (120)
147 2eqb_B RAB guanine nucleotide 24.2 1.8E+02 0.0061 26.6 6.8 27 1040-1066 10-36 (97)
148 1t3j_A Mitofusin 1; coiled coi 23.7 2E+02 0.0068 26.2 7.0 21 1039-1059 51-71 (96)
149 3u59_A Tropomyosin beta chain; 23.7 2.1E+02 0.0072 26.0 7.5 57 1041-1104 43-99 (101)
150 1ses_A Seryl-tRNA synthetase; 22.8 1.9E+02 0.0066 33.2 8.7 60 1038-1103 31-90 (421)
151 3hnw_A Uncharacterized protein 21.9 1.1E+02 0.0036 29.8 5.3 26 1078-1103 111-136 (138)
152 1ud0_A HSC70, 70 kDa heat-shoc 21.8 1.4E+02 0.0047 27.4 6.0 41 1051-1091 6-46 (113)
153 4dac_A Computationally designe 21.8 39 0.0013 22.8 1.4 21 1040-1060 6-26 (28)
154 2k48_A Nucleoprotein; viral pr 21.0 2.5E+02 0.0084 25.9 7.0 60 1039-1098 39-103 (107)
No 1
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=5e-196 Score=1828.07 Aligned_cols=853 Identities=41% Similarity=0.733 Sum_probs=787.1
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCcccCCCCCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCC
Q 001289 143 MAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMD 222 (1107)
Q Consensus 143 ~~~~y~p~~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D 222 (1107)
|++.|||..+|++||++|++ ++|++..+.++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+||||
T Consensus 3 ~~~~y~~~~~E~~~~~~W~~-~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D 81 (862)
T 1gax_A 3 LPKAYDPKSVEPKWAEKWAK-NPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTD 81 (862)
T ss_dssp CCSSCCGGGTHHHHHHHHHH-SCCCCCTTCCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEB
T ss_pred CccCCChHHHHHHHHHHHHh-CCCccCcCCCCCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccC
Confidence 67899999999999999999 99999876678899999999999999999999999999999999999999999999999
Q ss_pred ccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHH
Q 001289 223 HAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRL 302 (1107)
Q Consensus 223 ~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L 302 (1107)
|||||||.+||+++. ++|++++++||++|+++||+|+++|++.|++||++||+|+||+|+|+||||.|+++|+|+|.+|
T Consensus 82 ~~Glp~e~~vek~l~-~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L 160 (862)
T 1gax_A 82 HAGIATQVVVERLLL-KEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRY 160 (862)
T ss_dssp CCTHHHHHHHHTTTT-TTTSCCSCCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHH-HcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHH
Confidence 999999999998873 5799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCEEEeeeeeeecCCCCcccccccccccccCCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccC
Q 001289 303 YKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGD 382 (1107)
Q Consensus 303 ~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gd 382 (1107)
|++|||||+.++|||||.|+|+|||+||+|++.. |.+++|+||+.++ ++|+|||||||||+||
T Consensus 161 ~~kGliYrg~~~v~wcp~~~T~Lsd~EV~~~e~~----------------g~~~~v~f~~~~~-~~l~v~TTrPeTl~g~ 223 (862)
T 1gax_A 161 YHEGLAYRAPRLVNWCPRCETTLSDLEVETEPTP----------------GKLYTLRYEVEGG-GFIEIATVRPETVFAD 223 (862)
T ss_dssp HTTSSEEEECCEEEEETTTTEEECGGGEEECCEE----------------EEEEEEECCCSSS-CCCEEEESCSGGGTTC
T ss_pred HHCCCEEecccccccCCCcCcccccccccccccc----------------ceEEEEEEEecCC-CEEEEEeCCccccccc
Confidence 9999999999999999999999999999998866 6789999999876 7999999999999999
Q ss_pred cEEEEcCCCcccccccCcEEecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCcccc
Q 001289 383 TAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINS 462 (1107)
Q Consensus 383 taiaV~P~d~ry~~l~Gk~~~~P~~~~~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~ 462 (1107)
+||||||+|+||++|+|+++.||++++.+|||+|++ |+++||||+||+|||||++||++|++||||++++||++|++++
T Consensus 224 ~avav~P~~~ry~~l~G~~~~~P~~~~~ipii~~~~-V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~ 302 (862)
T 1gax_A 224 QAIAVHPEDERYRHLLGKRARIPLTEVWIPILADPA-VEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEG 302 (862)
T ss_dssp CCEEECSSCCTTCSCTTCCCBCTTCCCBCCEEECTT-CCTTSSSSEEECCGGGCHHHHHHHHHTTCCCCCSBCTTSBBCS
T ss_pred eEEEECCCccHHHHHcCCEEECCCCCCeeeEEeccc-cccCCCCcceEecCCCCchHHHHHHHcCCCccceeCCCCcccc
Confidence 999999999999999999999999999999999995 9999999999999999999999999999999999999999999
Q ss_pred CC--CCCCCCCChhhHHHHHHHHHHHcCCeeceeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCc
Q 001289 463 NG--GLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKK 540 (1107)
Q Consensus 463 ~~--g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~ 540 (1107)
+| | +|.||++++||++|++.|++.|++.+.+++.|++|+|||||++|++++++||||+|+++++++++++ ++++
T Consensus 303 ~~~~g-~~~Gl~~~~a~~~iv~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~qWFv~~~~~~~~~l~~v---~~~~ 378 (862)
T 1gax_A 303 ERVPE-ALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGL---RRGD 378 (862)
T ss_dssp SSSCT-TTSSSBSSHHHHHHHHHHHTTTCEEEEEEEEECCEEETTTCSBCCEEECCEEEECHHHHHHHHHHHH---HHTC
T ss_pred ccCCc-ccCCcCHHHHHHHHHHHHHhCCCeeeeccccccCCeecCCCCeEEEEecceEEEEhHHHHHHHHHHH---HcCC
Confidence 99 8 9999999999999999999999999999999999999999999999999999999999999999999 8889
Q ss_pred eEEeccccHHHHHHHhccCCCeeeeecCCCcccceeEEEccCcchhhccCCCCCceEEecCHH---HHHHHHhhhcCCCC
Q 001289 541 LELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEK---EALAVANKKFSGKK 617 (1107)
Q Consensus 541 i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~---ea~~~~~~~~~~~~ 617 (1107)
++|+|++.++++.+||++++|||||||||||||||+|||..|+ ...++..++ ++. .+.+|++
T Consensus 379 ~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~pIP~w~~~~~~-----------~i~v~~~~~l~~~~~--~~~~~g~-- 443 (862)
T 1gax_A 379 IAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDCQ-----------AVNVPRPERYLEDPT--SCEACGS-- 443 (862)
T ss_dssp CEESSSHHHHHHHHHHHTCCCCCCBCCCSSSCCCCCEEETTTC-----------CEECCCGGGTTCCCC--SCTTTCC--
T ss_pred ceEcCHHHHHHHHHHHhcccceeEecccCCCcccCceecCCCC-----------EEEEeccccccccch--hhhhcCc--
Confidence 9999999999999999999999999999999999999997552 122222000 000 1122332
Q ss_pred cccccCCCceeeEeccCCcccccccCCCCChhhhhhCCcCcccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeC
Q 001289 618 FEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRD 697 (1107)
Q Consensus 618 ~~l~~d~DvlDtWFdSgl~p~s~lgwp~~~~d~~~~yP~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D 697 (1107)
..++|++||||||||||+||++++|||+++++|++|||+|++++|+||+|||++||+++++.++|+.||++|++||+|+|
T Consensus 444 ~~~~r~~DvlDtWfdS~~~~~~~~~~p~~~~~~~~~~P~d~~v~G~Dii~~W~a~~~~~~~~~~g~~Pfk~v~~hG~vld 523 (862)
T 1gax_A 444 PRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLD 523 (862)
T ss_dssp SCEEECCCCBCHHHHHTSCTTGGGTTTSCCHHHHHSCSBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEECCEEC
T ss_pred hheecCCcccceeeccCCcchhhccCCCchHHHHhhCCceEEecCccccccHHHHHHHHHHHhcCCCcccEEEEeeeEEc
Confidence 26899999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccc
Q 001289 698 AHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKIN 777 (1107)
Q Consensus 698 ~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Din 777 (1107)
.+|+|||||+||||||.|+|+ +||+|+|||||++.++.++|++
T Consensus 524 ~~G~KMSKSlGNvIdP~dli~-------------------------------------~yGaDalR~~ll~~~~~~~D~~ 566 (862)
T 1gax_A 524 EKGQKMSKSKGNVIDPLEMVE-------------------------------------RYGADALRFALIYLATGGQDIR 566 (862)
T ss_dssp TTSCBCCTTTTCCCCHHHHHH-------------------------------------HHCHHHHHHHHHHHCCTTCCEE
T ss_pred CCCCCccccCCCCCCHHHHHH-------------------------------------HcChHHHHHHHHhcCCCCCCCc
Confidence 999999999999999999999 8999999999999888999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001289 778 LDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWW 857 (1107)
Q Consensus 778 f~~~~v~~~r~f~nKl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~ 857 (1107)
|+.+.+.++++|+|||||++||+++++.+ +.|.. ...+..|+||+++++.+++.++++|++|+|+.|++.+|+|+
T Consensus 567 fs~~~l~~~~~f~nkl~N~~rf~~~~~~~-~~~~~----~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~ 641 (862)
T 1gax_A 567 LDLRWLEMARNFANKLYNAARFVLLSREG-FQAKE----DTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELV 641 (862)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHSSS-CCCCB----CCCCHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCcc----ccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999999999999999999987754 43311 24678999999999999999999999999999999999999
Q ss_pred HHhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCcceeccCCCC
Q 001289 858 QYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSA 937 (1107)
Q Consensus 858 ~~~l~d~Yie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~a~~P~~ 937 (1107)
|+++||||++.+|++++++ +++++.+|+.+|+.+++||||||||+||||||+|+. .+||++++||++
T Consensus 642 ~~~~~n~Yie~~k~~l~~~-------~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~------~~sv~~~~wP~~ 708 (862)
T 1gax_A 642 WSEFCDWYLEAAKPALKAG-------NAHTLRTLEEVLAVLLKLLHPMMPFLTSELYQALTG------KEELALEAWPEP 708 (862)
T ss_dssp HHHTTTTHHHHHHHHHHTT-------BHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHC------CSCGGGSCCCCC
T ss_pred HHHhhHHHHHHcchhhhcc-------HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCC------CCeEEecCCCCC
Confidence 9999999999999998643 246788999999999999999999999999999974 269999999998
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccEEEEecChhHHHHHHHHHHHHHhhhccceEEEeccCCCCC
Q 001289 938 VEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQKNERLPAIAFCQTKGVSEIIRSHELEIVTLSTSSSLKVLLSGTDEA 1017 (1107)
Q Consensus 938 ~~~~~d~~~e~~~e~v~~vi~~iRslr~~~~~k~i~~~~~~~I~~~~~~~~~~l~~~~~~I~~L~~v~~v~i~~~~~~~~ 1017 (1107)
+ +.|+.++..++.++++++.+|++|+++ +|+.+.++.+.+.+ .. +.++.+.+.|+.|+++++| .. .
T Consensus 709 ~--~~d~~~~~~~~~~~~v~~~~r~~r~~~---~i~~~~~~~~~v~~-~~-~~~~~~~~~i~~~~~~~~~---~~----~ 774 (862)
T 1gax_A 709 G--GRDEEAERAFEALKQAVTAVRALKAEA---GLPPAQEVRVYLEG-ET-APVEENLEVFRFLSRADLL---PE----R 774 (862)
T ss_dssp C--CCCHHHHHHHHHHHHHHHHHHHHHHHH---TCCTTCCEEEEEEE-SC-HHHHHTHHHHHHHHCEEEC---SS----C
T ss_pred C--cCCHHHHHHHHHHHHHHHHHHHhhhhh---cCCCCCeeEEEEeC-hH-HHHHHHHHHHHHHhCcccc---cc----c
Confidence 7 368999999999999999999999999 88555444333222 33 6688889999999999887 12 5
Q ss_pred CCCceEEeeeCCEEEEEecc--ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHH
Q 001289 1018 PTDCAFQNVNENLKVYLKVE--VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDF 1095 (1107)
Q Consensus 1018 p~~~~~~~v~~~~~v~l~l~--iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~ 1095 (1107)
|.+|+..++ +++++++++. ||+++|++||.|+++++++++++++++|+|++|++|||++|++++++|++++++++++
T Consensus 775 ~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~rl~k~~~~~~~~~~~~~~~l~~~~f~~~ap~~~~~~~~~~~~~~~~~~~~ 853 (862)
T 1gax_A 775 PAKALVKAM-PRVTARMPLEGLLDVEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAER 853 (862)
T ss_dssp CSSEEEEEC-SSEEEEEECCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSSSCTTHHHHHHHHHHHHHHHHHH
T ss_pred cccceEEec-CCcEEEEEeccccCHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 788877654 5799999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 001289 1096 FENESNRLG 1104 (1107)
Q Consensus 1096 l~~~l~~l~ 1104 (1107)
++++|++|+
T Consensus 854 ~~~~~~~~~ 862 (862)
T 1gax_A 854 IREALSQIG 862 (862)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhcC
Confidence 999999873
No 2
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=1.6e-165 Score=1563.65 Aligned_cols=791 Identities=24% Similarity=0.380 Sum_probs=695.9
Q ss_pred CccCCCCCcccccccchhhhcCCCchhHHHHHHHHHHhcCCcccCC--CCCCCcEEEECCCCCCCCCCCchhhHHhHHHH
Q 001289 125 EFVDPETPLGEKKRMSKQMAKEYNPSSVEKSWYSWWENSGYFIADN--KSSKPSFVIVLPPPNVTGALHIGHALTTAIQD 202 (1107)
Q Consensus 125 ~~~~~~t~~~~k~~~~~~~~~~y~p~~vE~~w~~~W~~~~~f~~~~--~~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D 202 (1107)
+.++|+|.|++| ||+..+|++||++|+++++|++.. +.++++|+|++|||||||.||||||+|++++|
T Consensus 6 tl~lp~t~fpm~----------~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPY~nG~lHiGHa~n~~~~D 75 (917)
T 1ffy_A 6 TLLMPKTDFPMR----------GGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKD 75 (917)
T ss_dssp GSCCCCCCCCSS----------CCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCEECCCCBSSSCCCHHHHHHHHHHH
T ss_pred hhcCCCCCCCCC----------CChHHHhHHHHHHHHHCCCcccchhhccCCCceeeCCCCCCCCCcchHHHHHHHHHHH
Confidence 678899988765 788899999999999999999864 35678999999999999999999999999999
Q ss_pred HHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCC
Q 001289 203 TIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSR 282 (1107)
Q Consensus 203 ~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r 282 (1107)
+++||+||+||+|+|+|||||||||||.+|+++ |++++++++++|+++|++|+.++++.|++||++||+|+||+|
T Consensus 76 ii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~-----G~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~rlG~~~Dwd~ 150 (917)
T 1ffy_A 76 FIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKK-----GVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFND 150 (917)
T ss_dssp HHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHH-----TCCSTTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTS
T ss_pred HHHHHHHhCCCCCCCcccCchhhHHHHHHHHHc-----CCCchhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEccCC
Confidence 999999999999999999999999999999874 888999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCcccccccccccccCCcceeeecCcccccccceEEEEeeec
Q 001289 283 ECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPL 362 (1107)
Q Consensus 283 ~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l 362 (1107)
+|+||||.|+++|+++|.+|+++|+|||+.++|||||.|+|+|||+||+|++..+ ..++++|++
T Consensus 151 ~~~T~d~~~~~~v~~~F~~l~~kGliYr~~~~v~wcp~~~T~Lae~eVey~d~~~----------------~~~~v~f~~ 214 (917)
T 1ffy_A 151 PYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHDKRS----------------ASIYVAFNV 214 (917)
T ss_dssp CEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEEEEEE----------------EEEECCBCC
T ss_pred CeEcCCHHHHHHHHHHHHHHHHcCCeEecccceeccCCCCcCcchhhhhcccccC----------------ceEEEEEEe
Confidence 9999999999999999999999999999999999999999999999999988654 345678888
Q ss_pred CC------CcceEEEeeccccccccCcEEEEcCC---------Cc-------------------ccc----------ccc
Q 001289 363 EG------GLGEIVVATTRVETMLGDTAIAIHPE---------DA-------------------RYS----------HLH 398 (1107)
Q Consensus 363 ~~------~~~~i~vaTTrPeT~~gdtaiaV~P~---------d~-------------------ry~----------~l~ 398 (1107)
.+ ++.+|+||||||||||||+||||||+ |+ +|+ +|+
T Consensus 215 ~~~~g~~~~~~~~~i~TTrP~Tl~~~~av~v~p~~~Y~~v~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~ 294 (917)
T 1ffy_A 215 KDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIKLEKEYTGKELE 294 (917)
T ss_dssp CSSTTGGGTTCCBCCEESCGGGSSCCBCCCCCTTCCCCCCCTTTTCCCCCHHHHHHHHTTTTCCSSCCCCCCCCCTTTCT
T ss_pred cccccccCCCCeEEEEeCCcchhhhceEEEECCCCceEEEEeCCceeehHHHHHHHHHHhcCcccceeeeeeeeeccccc
Confidence 65 26799999999999999999999998 43 565 799
Q ss_pred CcEEecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHH
Q 001289 399 GKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKARE 478 (1107)
Q Consensus 399 Gk~~~~P~~~~~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~ 478 (1107)
|+++.|||+++.+||+.+++ |++++|||+||+|||||++||++|++|||+++++||++|++++++| +|.||++++||+
T Consensus 295 g~~~~~P~~~~~~pvi~~~~-V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~vd~~G~~~~~~~-~~~G~~v~~A~~ 372 (917)
T 1ffy_A 295 WVVAQHPFLDRESLVINGDH-VTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGG-QFEGMFYDKANK 372 (917)
T ss_dssp TCCCBCCTTCCSBCCCCCCS-SCCSSSCSCCCBCTTSCSHHHHTTTSSSCCCCCCCCSSSCCCTTCS-SCSSSCSSHHHH
T ss_pred CCEEECCCCCCeeeEEeccc-cccCCCCceeEeCCCCCHHHHHHHHHcCCCeeeeECCCceeCCccc-ccCCcCHHHHHH
Confidence 99999999999999999995 9999999999999999999999999999999999999999999998 999999999999
Q ss_pred HHHHHHHHcCCeeceeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHhcc
Q 001289 479 AVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEA 558 (1107)
Q Consensus 479 ~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~~ 558 (1107)
.|++.|++.|++++.+++.|+||+|||||++|++++++|||++|+++++++++++ + +++|+|+..++++.+||++
T Consensus 373 ~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~t~QWFi~~~~lr~~~l~~i---~--~~~~~P~~~~~r~~~~l~~ 447 (917)
T 1ffy_A 373 AVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAI---E--NTNFKVNWGKTRIYNMVRD 447 (917)
T ss_dssp TTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEEEEEEEECHHHHHHHHHHHH---H--TSEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCccccccccccCCEecCCCCEEEEEeccceEeeHHHHHHHHHHHH---h--cCcccCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999 4 6999999999999999999
Q ss_pred CCCeeeeecCCCcccceeEEEccCcch-hhcc----------CCCCCceEEecCHHHHHHHHhhhcCCCC-cccccCCCc
Q 001289 559 IRDWCVSRQLWWGHQIPAWYVTLEDDE-LKEL----------GSYNDHWIVARDEKEALAVANKKFSGKK-FEMCQDPDV 626 (1107)
Q Consensus 559 l~DWcISRQ~~WG~pIP~~~~~~~~~~-~~~~----------~~~~~~w~~~~~~~ea~~~~~~~~~~~~-~~l~~d~Dv 626 (1107)
++|||||||||||||||+|||.. +.. .++. ......|+.+. ..+... ....||.++ ..++|++||
T Consensus 448 ~~DW~ISRqr~WG~PIP~~~~~~-g~~~~~~~~~~~i~~~~~~~g~~~W~~~~-~~~~~~-~~~~~~~~g~~~~~~~~D~ 524 (917)
T 1ffy_A 448 RGEWVISRQRVWGVPLPVFYAEN-GEIIMTKETVNHVADLFAEHGSNIWFERE-AKDLLP-EGFTHPGSPNGTFTKETDI 524 (917)
T ss_dssp CCCEECEESCSSSCBCCCEECTT-SCEECCHHHHHHHHHHHHHHCTHHHHHSC-HHHHSS-TTCCCSSCTTSCCEECCCE
T ss_pred CccceeeccCCcCcccceeeCCC-CCEecCHHHHHHHHHHhhhcCCcccccCC-HHHhcc-cccccccCCcccccccCCC
Confidence 99999999999999999999864 210 0000 00112333211 111100 011344433 368999999
Q ss_pred eeeEeccCCcccccccCCCCChhhhhhCCcCcccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCcccccc
Q 001289 627 LDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKS 706 (1107)
Q Consensus 627 lDtWFdSgl~p~s~lgwp~~~~d~~~~yP~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS 706 (1107)
||||||||++|++++++++ ++ .||+|++++|+||+||||.+|++.+..++|..||++|++||||+|.+|+|||||
T Consensus 525 lD~WfdSg~~~~~~l~~~~---~~--~~P~Dl~~~G~D~~r~wf~~~l~~s~~~~g~~Pfk~v~~hG~V~d~~G~KMSKS 599 (917)
T 1ffy_A 525 MDVWFDSGSSHRGVLETRP---EL--SFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKS 599 (917)
T ss_dssp ECHHHHHHTHHHHTTTTST---TC--CSSBSEEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSCCCCSS
T ss_pred cCeecCCCCCHHHHcCCch---hc--CCCceEEEEEecccccHHHHHHHHHHHhhCCCcccceeEeeeEEcCCCcCcccc
Confidence 9999999999999988642 34 399999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHHH
Q 001289 707 LGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGY 786 (1107)
Q Consensus 707 lGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~ 786 (1107)
+||||+|.++|+ +||+|+|||||++ ++.++|++|+.+.+.+.
T Consensus 600 lGNvV~P~dvi~-------------------------------------~yGaDalR~~lls-~~~~~D~~fs~~~l~~~ 641 (917)
T 1ffy_A 600 LGNVIVPDQVVK-------------------------------------QKGADIARLWVSS-TDYLADVRISDEILKQT 641 (917)
T ss_dssp SSCCCCHHHHHH-------------------------------------HTCHHHHHHHHHT-SCTTSCEECCHHHHHHH
T ss_pred cCCcCChHHHHH-------------------------------------hCCHHHHHHHHhc-cCCCCCcccCHHHHHHH
Confidence 999999999999 8999999999998 78899999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhCCCCCCC-CCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHH
Q 001289 787 RQWCNKLWNAVRFSMSKLGEGFVPP-LKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVF 865 (1107)
Q Consensus 787 r~f~nKl~N~~rf~l~~l~~~~~p~-~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Y 865 (1107)
++++++|||+++|+++++.+ |.+. .......++..|+||+++|+.+++.+.++|++|+|+.|++.|++|+++++||+|
T Consensus 642 ~~~~~kl~n~~r~~l~nl~~-~~~~~~~v~~~~l~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~l~~~Y 720 (917)
T 1ffy_A 642 SDDYRKIRNTLRFMLGNIND-FNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFY 720 (917)
T ss_dssp HHHHHHHHHHHHHHHHTSTT-CCHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCH
T ss_pred HHHHHHHHHHHHHHHhhhhc-cCcccccCCccccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988753 5431 111122457889999999999999999999999999999999999977999999
Q ss_pred HHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCcceeccCCCCCCCCCcHH
Q 001289 866 IEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWTDER 945 (1107)
Q Consensus 866 ie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~a~~P~~~~~~~d~~ 945 (1107)
++.+|++++.++.. +..+++++.+|+.+++.+++||||||||+|||||++|+.. ..+||+.+.||++++ .|+.
T Consensus 721 l~~~k~rl~~~~~~-~~~r~~~~~~l~~~l~~l~~lLaP~~P~~aEeiw~~l~~~----~~~sv~~~~wP~~~~--~~~~ 793 (917)
T 1ffy_A 721 LDYGKDILYIEQRD-SHIRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPHV----KEESVHLADMPKVVE--VDQA 793 (917)
T ss_dssp HHHHHHHHTTSCTT-CHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHTTSTTC----SSSSGGGSCCCCCCC--CCHH
T ss_pred HHhcchhhhccCCC-cHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHcccC----CCCCeEecCCCCCCc--chHH
Confidence 99999998765321 1157789999999999999999999999999999999852 246999999999876 4788
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHhhccCCCCccc--EEEEecChh-HHHHHHHHHHHHHhhhccceEEEec
Q 001289 946 AEFEMDLVEST----VRCIRSLRAEVLGKQKNERLP--AIAFCQTKG-VSEIIRSHELEIVTLSTSSSLKVLL 1011 (1107)
Q Consensus 946 ~e~~~e~v~~v----i~~iRslr~~~~~k~i~~~~~--~~I~~~~~~-~~~~l~~~~~~I~~L~~v~~v~i~~ 1011 (1107)
+++.++.++++ ++++|.+|++. +|+...+ +.|.+.++. ..+.|+.+ +.|+.+++++++++..
T Consensus 794 l~~~~~~~~~v~~~v~~~~~~~R~~~---~i~~~l~~~v~i~~~~~~~~~~~l~~~-~~l~~~~~~s~~~~~~ 862 (917)
T 1ffy_A 794 LLDKWRTFMNLRDDVNRALETARNEK---VIGKSLEAKVTIASNDKFNASEFLTSF-DALHQLFIVSQVKVVD 862 (917)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT---SCSSGGGEEEEEECCSSCCHHHHGGGC-SCHHHHTTSSEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCceEEEEEeCChhhHHHHHhhH-HHHHHHhcccceEEec
Confidence 88899999875 66788889887 8865554 445544443 56667766 7799999999999864
No 3
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=1.9e-161 Score=1521.78 Aligned_cols=743 Identities=24% Similarity=0.409 Sum_probs=664.9
Q ss_pred cCCCchhHHHHHHHHHHhcCCcccCCC--CCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCC
Q 001289 145 KEYNPSSVEKSWYSWWENSGYFIADNK--SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMD 222 (1107)
Q Consensus 145 ~~y~p~~vE~~w~~~W~~~~~f~~~~~--~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D 222 (1107)
+.|||..+|++||++|+++++|++..+ .++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|++|||
T Consensus 6 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D 85 (821)
T 1ile_A 6 GEPNFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWD 85 (821)
T ss_dssp CCCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEEC
T ss_pred cCCCHHHHHHHHHHHHHHCCCcccChhhcCCCCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCccccccccc
Confidence 679999999999999999999998752 467899999999999999999999999999999999999999999999999
Q ss_pred ccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHH
Q 001289 223 HAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRL 302 (1107)
Q Consensus 223 ~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L 302 (1107)
|||+|||.+|++++....+..++++|+++|++.|++|++++++.|++||++||+|+||+|+++||||.|+++|+|+|.+|
T Consensus 86 ~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L 165 (821)
T 1ile_A 86 THGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNL 165 (821)
T ss_dssp CCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHhcccccchHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHH
Confidence 99999999999764221112235789999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCEEEeeeeeeecCCCCccccccccc--ccccCCcceeeecCcccccccceEEEEeeecCCC------cceEEEeec
Q 001289 303 YKEGLIYRDLRLVNWDCVLRTAISDIEVD--YVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGG------LGEIVVATT 374 (1107)
Q Consensus 303 ~~~GlIyr~~~~V~W~p~~~TaLsd~EVe--~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~------~~~i~vaTT 374 (1107)
+++|+|||+.++|||||.|+|+|||+||+ |+++. |..++++|++.++ +.+|+||||
T Consensus 166 ~~~Gliy~~~~~v~wcp~~~t~Lad~ev~~G~~~~~----------------~~~~~v~f~~~~~~~~~~~~~~l~v~TT 229 (821)
T 1ile_A 166 FDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYKEIQ----------------DPSVYVRFPLKEPKKLGLEKASLLIWTT 229 (821)
T ss_dssp HHTTCEEEECCEEEEETTTTEECCHHHHHHTEEEEE----------------EEEEEEEEEBSSGGGGTCSSEEEEEEES
T ss_pred HHcCCeeecCcceEecCCCCCcccHhHhhcCccccc----------------CceEEEEEEecCCcccCCCCCEEEEEcC
Confidence 99999999999999999999999999994 66544 4567899999875 689999999
Q ss_pred cccccccCcEEEEcCC---------Cccc-----------------------ccccCcEEecCCC---CCccceEecCcc
Q 001289 375 RVETMLGDTAIAIHPE---------DARY-----------------------SHLHGKFAIHPFN---GRKIPIICDAIL 419 (1107)
Q Consensus 375 rPeT~~gdtaiaV~P~---------d~ry-----------------------~~l~Gk~~~~P~~---~~~iPIi~d~~~ 419 (1107)
|||||+||+||||||+ |++| ++|+|+.+.|||. ++.+||+.+++
T Consensus 230 rP~Tl~g~~av~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~p~~~~~~~~~pi~~~~~- 308 (821)
T 1ile_A 230 TPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTQVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADY- 308 (821)
T ss_dssp CGGGGGGCCCEEECTTSCEEEEEETTEEEEEETTHHHHHTCTTSCEEEEECHHHHTTCBBCCSSCCCCSSCSBEEECTT-
T ss_pred CChhhhhcEEEEECCCCceeEEEcCCcEEEehHHHHHHHHhhCcEEEEEechHHhcCCEEEcCCcccCCCEEEEEecCc-
Confidence 9999999999999999 5565 4789999999995 89999999995
Q ss_pred ccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCeeceeccccc
Q 001289 420 VDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMR 499 (1107)
Q Consensus 420 Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~~~~~~ 499 (1107)
|++++|||+||+|||||++||++|++|||+++++||++|+++++ | |.||.+++||+.|++.|+++|++++.+++.|+
T Consensus 309 V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~-~--~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~h~ 385 (821)
T 1ile_A 309 VSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVE-P--FKGLYFREANRAILRDLRGRGLLFKEESYLHS 385 (821)
T ss_dssp CCSSSSCSCEECCTTSCHHHHHHHHHTTCCCCCCBCTTSBBCSG-G--GTTCBHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred CccCCCCcceEecCCCCHHHHHHHHHcCCCcceeECCCCcCccc-C--cCCCCHHHHHHHHHHHHHhCCCeeeeeccccc
Confidence 99999999999999999999999999999999999999999977 5 99999999999999999999999999999999
Q ss_pred cceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEecccc-HHHHHHHhccCCCeeeeecCCCcccceeEE
Q 001289 500 LGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQY-TAEWRRWLEAIRDWCVSRQLWWGHQIPAWY 578 (1107)
Q Consensus 500 ~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~-~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~ 578 (1107)
+|+|||||++|++++++|||++|+++++++++++ ++++|+|+.. ++++.+||++++|||||||||||||||+|+
T Consensus 386 ~p~c~r~~~~~~~~~~~qWF~~~~~~~~~~~~~~-----~~~~~~P~~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~ 460 (821)
T 1ile_A 386 YPHCWRCSTPLMYYATESWFIKNTLFKDELIRNN-----QEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWV 460 (821)
T ss_dssp EEBCSSSCCBCEEEECCEEEECGGGGHHHHHHHH-----HHSEESSGGGTTTTTHHHHHTCCCEECCBCCSSSCBCCEEE
T ss_pred CCEecCCCCEEEEEecchhhhchHHHHHHHHHHh-----cCeEEECchhhHhHHHHHHhCCchheecccCCCCCeeeEEE
Confidence 9999999999999999999999999999999998 5789999998 468999999999999999999999999999
Q ss_pred EccCcchhhccCCCCCceEEecCHHHHHHH------------------HhhhcCCCCcccccCCCceeeEeccCCccccc
Q 001289 579 VTLEDDELKELGSYNDHWIVARDEKEALAV------------------ANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSV 640 (1107)
Q Consensus 579 ~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~------------------~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~ 640 (1107)
|..|+. .++++ ++++..+. ....|| ++..++|++||||||||||++|+++
T Consensus 461 ~~~~~~----------~~vi~-~~~~l~~~~~~~~~~~~~l~~~~~d~~~~~~~-~g~~~~r~~dvld~WfdS~~~~~~~ 528 (821)
T 1ile_A 461 CQACGK----------EEAIG-SFQELKARATKPLPEPFDPHRPYVDQVELACA-CGGTMRRVPYVIDVWYDSGAMPFAS 528 (821)
T ss_dssp ESSSSC----------CEECC-SHHHHHHHBSSCCCSSCCCSHHHHTTCEEECT-TSSEEEECSCBCCHHHHHHHHHHHT
T ss_pred ecCCCc----------EEeeC-cHHHHHhhccccccchhhhccccccccccCCC-CCCchhhcccccceecccccchHhh
Confidence 976641 23222 22222110 001244 3457899999999999999999999
Q ss_pred ccCCCCC-hhhhhhCCcCcccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCccccccc
Q 001289 641 LGWPDDT-DDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVING 719 (1107)
Q Consensus 641 lgwp~~~-~d~~~~yP~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g 719 (1107)
++||.++ ++|++|||+|++++|+||+|||+++|++++..++|+.||++|++||+|+|.+|+|||||+||||+|.|+|+
T Consensus 529 ~~~p~~~~~~f~~~~P~dl~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G~KMSKS~GNvV~p~dli~- 607 (821)
T 1ile_A 529 LHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIR- 607 (821)
T ss_dssp TTTTTSCHHHHHHHSSBSBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHT-
T ss_pred cCCCccchHHHhhcCCcccccchhhhhccHHHHHHHHHHHhcCCCCcceEEEEeeEECCCCCCCCccCCCCCCHHHHHH-
Confidence 9999764 67999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHH-HHHHHHHHHHHHH
Q 001289 720 ISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG-YRQWCNKLWNAVR 798 (1107)
Q Consensus 720 ~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~-~r~f~nKl~N~~r 798 (1107)
+||+|+|||||++.++.++|++|+.+.+.+ +++|+|+|||+++
T Consensus 608 ------------------------------------~yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~~~~~~kl~N~~~ 651 (821)
T 1ile_A 608 ------------------------------------KFGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVYS 651 (821)
T ss_dssp ------------------------------------TTCHHHHHHHHHHHSCSSSCEECCHHHHHHHHHHTHHHHHHHHH
T ss_pred ------------------------------------HhCHHHHHHHHHhCCCCCCCcEecHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999988889999999999999 6999999999999
Q ss_pred HHhh--hhCCCCCC-CCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHHHHhhcccccC
Q 001289 799 FSMS--KLGEGFVP-PLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAG 875 (1107)
Q Consensus 799 f~l~--~l~~~~~p-~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~ 875 (1107)
|++. ++. ++.| ... ....++..|+||+++++.+++.+.++|++|+|+.|++.|++|+|+++||+|++.+|++++.
T Consensus 652 ~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yl~~~k~~~~~ 729 (821)
T 1ile_A 652 FFVTYANLD-RPDLKNPP-PPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFWK 729 (821)
T ss_dssp HHHHHHHHH-CCCTTSCC-CSTTSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTHHHHHHHHHT
T ss_pred HHHHhhccc-cCCccccc-ccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 9752 332 3443 211 1224568899999999999999999999999999999999999999999999999987654
Q ss_pred CC-cccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCC-cceeccCCCCCCCCCcHHHHHHHHHH
Q 001289 876 DN-PAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKE-SIMLCEYPSAVEGWTDERAEFEMDLV 953 (1107)
Q Consensus 876 ~~-~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~-SI~~a~~P~~~~~~~d~~~e~~~e~v 953 (1107)
.. .. .+++++.+|+.+|+.+++||||||||+|||||++|+...+ ...+ ||+.+.||++++.+.|++++..++.+
T Consensus 730 ~~~~~---~r~~~~~~l~~~l~~~~~lLaP~~P~~aeelw~~L~~~~~-~~~~~sv~~~~~P~~~~~~~~~~~~~~~~~~ 805 (821)
T 1ile_A 730 NEDAL---DREAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRSVR-LEAKESVHLADWPEADPALADEALVAQMRAV 805 (821)
T ss_dssp CTTTS---STTHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHTTTTS-TTSCSSGGGSCCCCCCTTTCCHHHHHHHHHH
T ss_pred CCCcH---HHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHhcccccc-CCCCCceEeecCCCCCcccCCHHHHHHHHHH
Confidence 32 11 3457889999999999999999999999999999986321 1235 99999999999888899999999999
Q ss_pred HHHHHHHHHHHHHh
Q 001289 954 ESTVRCIRSLRAEV 967 (1107)
Q Consensus 954 ~~vi~~iRslr~~~ 967 (1107)
+++++.+|++|+++
T Consensus 806 ~~~~~~~r~~r~~~ 819 (821)
T 1ile_A 806 LKVVDLARAARAKS 819 (821)
T ss_dssp HHHHHHHTTCTTSC
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999987
No 4
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.5e-144 Score=1384.55 Aligned_cols=743 Identities=22% Similarity=0.350 Sum_probs=620.0
Q ss_pred cCCCchhHHHHHHHHHHhcCCcccCCCCCC---CcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCC
Q 001289 145 KEYNPSSVEKSWYSWWENSGYFIADNKSSK---PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 221 (1107)
Q Consensus 145 ~~y~p~~vE~~w~~~W~~~~~f~~~~~~~k---~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~ 221 (1107)
+.|||..+|++||++|+++++|++..+ ++ ++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|||
T Consensus 2 ~~~~~~~iE~~~~~~W~~~~~f~~~~~-~~~~~~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~Gw 80 (967)
T 1wz2_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIR-DKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAW 80 (967)
T ss_dssp --CCCHHHHHHHHHHHHHHTTTSCCGG-GSCGGGCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCB
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccCcc-ccCCCCcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcC
Confidence 469999999999999999999998764 34 79999999999999999999999999999999999999999999999
Q ss_pred CccChhHHHHHHHHHH---H--HhCCCccccChHHH--HHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCC--hhhH
Q 001289 222 DHAGIATQVVVEKKLM---R--ERKLTRHDIGREQF--VSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMD--EKRS 292 (1107)
Q Consensus 222 D~~Gi~~q~~vEk~l~---~--~~g~~~~d~~re~f--~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d--~~~~ 292 (1107)
||||+|++.++++... . +.-.....++++++ ...|++|+++|++.+++||++||+|+||+|+|+||| |.|+
T Consensus 81 D~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~ 160 (967)
T 1wz2_A 81 HITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFS 160 (967)
T ss_dssp BCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHH
T ss_pred CCCCcHHHHHHHHhhccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHH
Confidence 9999999998875310 0 00001123334432 235999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHcCCEEEeeeeeeecCCCCcccccccccccccCCcceeeecCcccccccceEEEEeeecCCCc--ceEE
Q 001289 293 KAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGL--GEIV 370 (1107)
Q Consensus 293 ~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~--~~i~ 370 (1107)
++|+|+|.+||++|||||+.++|||||.|+|+|||+||++.+..+ .+..++++|++.+++ .+|+
T Consensus 161 ~~v~~~F~~L~~kGliyr~~~~v~wcp~~~T~Lad~Ev~~~~~~~--------------~~~~~~v~f~~~~~~~~~~l~ 226 (967)
T 1wz2_A 161 KFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVP--------------ILDYIIIKFELRENGEVIYLP 226 (967)
T ss_dssp HHHHHHHHHTTTTTCEEECCCCCEECTTTSCBCCSSSCSSCCCCC--------------EECCEEEEEECCCSSSCCEEE
T ss_pred HHHHHHHHHHHHCCCEEEeceEecccCCCCCCcchhhhccCCCce--------------eceeEEEEEEecCCCCceEEE
Confidence 999999999999999999999999999999999999999865322 234577899997753 7899
Q ss_pred EeeccccccccCcEEEEcCC---------C----cc------------cc-------------cccCcEEecCCCCCccc
Q 001289 371 VATTRVETMLGDTAIAIHPE---------D----AR------------YS-------------HLHGKFAIHPFNGRKIP 412 (1107)
Q Consensus 371 vaTTrPeT~~gdtaiaV~P~---------d----~r------------y~-------------~l~Gk~~~~P~~~~~iP 412 (1107)
|||||||||+|||||||||+ + ++ |+ +|+|+++.||++++.+|
T Consensus 227 i~TTrPeTl~g~~avav~P~~~Y~~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~G~~l~G~~~~~P~~~~~ip 306 (967)
T 1wz2_A 227 AATLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVI 306 (967)
T ss_dssp EEESCGGGGGGCCEEEECSSSCEEEEEEECSSCEEEEEEEHHHHHHHHHSSCEEEEEEECCSSTTSSCEEECSSSSCEEE
T ss_pred EEcCCchHhhhheEEEECCCCcEEEEEecCCCcceeeehHHHHHHHHHhhccCcEEEEEEEchhhcCCEEECCCCCCceE
Confidence 99999999999999999999 4 32 32 79999999999999999
Q ss_pred eEecCccccCCCCCCceecCCCCCcchHHH----------HHHhCCc--------cceeeCC------------------
Q 001289 413 IICDAILVDPKFGTGAVKITPAHDPNDFDV----------GKRHNLE--------FINIFTD------------------ 456 (1107)
Q Consensus 413 Ii~d~~~Vd~~~GTG~V~~tPaHd~~D~~~----------~~~~~L~--------~i~iid~------------------ 456 (1107)
|+++++ |++++|||+||+|||||++||++ +++|||+ ++++|+.
T Consensus 307 i~~~~~-V~~~~GTG~V~~~Pah~~~Dy~~~~~~~~~~~~~~k~~l~~~~~~~l~~i~vi~~~~~g~~~~~~~~~~~~i~ 385 (967)
T 1wz2_A 307 ILPAEF-VDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIK 385 (967)
T ss_dssp EEECSS-CCSSSTTSCEEECTTSCTTTTTTTSCCSCCSCCCCTTCCCCCCC----------------CCSSCCTTTSSSC
T ss_pred EEeccc-ccCCCCcccEEeecCCCHHHHHHHHhhccchhHHHHcCCchhhcccccceeeeecCCccccchhhhhhhccCC
Confidence 999995 99999999999999999999985 5788876 7777632
Q ss_pred ---------------------CCccccCCCCCCCCCChhhHHHHHHHHHHHcCCeeceeccccccceeccCCCeeEec-c
Q 001289 457 ---------------------DGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPM-I 514 (1107)
Q Consensus 457 ---------------------dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~-~ 514 (1107)
+|+|+ +| +|.|+++++||+.|++.|++.|++....++.| +|+|+|||++|+++ +
T Consensus 386 ~~~d~~~l~~a~~~~y~~~~~~G~~~--~g-~~~G~~v~ea~~~i~~~L~~~g~l~~~~~~~~-~p~~~R~g~~~i~~~~ 461 (967)
T 1wz2_A 386 SQKDKEKLEQATKTIYKAEYHKGIFK--VP-PYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAE-KNVISRFGNRAVIKII 461 (967)
T ss_dssp CCSSCTTHHHHTTHHHHHHHHSCBCC--SS-SSCSSBHHHHTTTTHHHHHHHTSEEECCEESS-SCCBCSSSSBCEECCC
T ss_pred CccchHHHHHHHHHhhhccccCceEe--cc-CcCCcCHHHHHHHHHHHHHhCCCceEEEecCC-CceECCCCCEEEEecc
Confidence 67776 77 89999999999999999999999987766544 79999999999998 6
Q ss_pred cccccccccH--HHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeecCCCccccee---EEEccCcchhhcc
Q 001289 515 KPQWYVNCNS--MAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPA---WYVTLEDDELKEL 589 (1107)
Q Consensus 515 ~~QWfv~~~~--~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~---~~~~~~~~~~~~~ 589 (1107)
++||||++++ +++.+++++ ++++|+|+..++++.+||++++||||||||+||||||+ |.+. ...++
T Consensus 462 ~~qWFi~~~~~~~k~~~l~~~-----~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~piP~d~~~~~~----~~~ds 532 (967)
T 1wz2_A 462 HDQWFIDYGNPEWKEKARKAL-----ERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIE----SLSDS 532 (967)
T ss_dssp SSCEEEESCCTTHHHHHHHHH-----TTSCEESSTTHHHHHHHHHSCCEECCCBSSSSSEECTTCTTSEEC----HHHHT
T ss_pred CCccceecCchHHHHHHHHhh-----hccEeeCccccchHHHhhhcccCeeeccCCCCCccCCcCcccccc----cCCCC
Confidence 9999999994 899999999 57899999999999999999999999999999999994 3332 11222
Q ss_pred CCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEecc----CC-ccc-ccccCCCC-----ChhhhhhCCcCc
Q 001289 590 GSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSS----GL-FPL-SVLGWPDD-----TDDLKAFYPTSV 658 (1107)
Q Consensus 590 ~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdS----gl-~p~-s~lgwp~~-----~~d~~~~yP~dl 658 (1107)
+.|..++.+++..+++. ..++.....+ .++++|+||++ |. +++ ...|||.. +++|++|||.|+
T Consensus 533 ~iYv~~~~~~~~~~~~~----~~~g~~~~~l--~~~~~d~~~~~~~~~g~~~~~~~~sG~~~~~~~~~~~~~~~w~P~Di 606 (967)
T 1wz2_A 533 TIYMAYYTISRHINKLR----QEGKLDPEKL--TPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDW 606 (967)
T ss_dssp TSTHHHHHHHHHHHHHH----HTTCCCGGGC--CHHHHHHTTTSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHCSCSE
T ss_pred ceEeehhhhhhHHHHHH----HhcCCChHHc--CcccceeeccCccccCccccchhhcCCCHHHHhhhHHHHHhhCCCeE
Confidence 33322223333332221 1222211112 45899999975 32 221 25688865 367999999999
Q ss_pred ccccccccchHHHHHHHHHHHhcCCCCc-cEEEEcceeeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCChH
Q 001289 659 LETGHDILFFWVARMVMLGIKLGGEVPF-TKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPK 737 (1107)
Q Consensus 659 ~~tG~Dil~fW~armi~~~~~l~g~~PF-k~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~ 737 (1107)
+++|+||+|||..++++++..+++..|| +.|++||||++ +|+|||||+||||||.++|+
T Consensus 607 ~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~d~i~------------------- 666 (967)
T 1wz2_A 607 RCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIE------------------- 666 (967)
T ss_dssp EEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEE-SSSCCCTTTCCCCBHHHHHH-------------------
T ss_pred EeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEee-CCEEccccccCCCCHHHHHH-------------------
Confidence 9999999999999999999998888776 99999999996 89999999999999999999
Q ss_pred HHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCC
Q 001289 738 ELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPH 817 (1107)
Q Consensus 738 e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r~f~nKl~N~~rf~l~~l~~~~~p~~~~~~~ 817 (1107)
+||+|+|||||++.++.++|++|+.+.+.++++|++++||+++++++.. .|. ..
T Consensus 667 ------------------~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~----~~~----~~ 720 (967)
T 1wz2_A 667 ------------------ENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFAEYE----VKG----NV 720 (967)
T ss_dssp ------------------TTCHHHHHHHHHHHCCTTCCEEECHHHHHHHHHHHHHHHHHHHHHHSSC----CCC----CC
T ss_pred ------------------HhChHHHHHHHHhCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHhcCC----CCC----cc
Confidence 8999999999998889999999999999999999999999999986431 111 12
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHH
Q 001289 818 NLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLET 897 (1107)
Q Consensus 818 ~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~ 897 (1107)
..+..|+||+++++.+++.+.++|++|+|+.|+.+++.|+++ .||+|++.+|+. .+++++.+|+.+|+.
T Consensus 721 ~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~A~~~~~~~l~~-~~n~Yi~~~k~~----------~~~~~~~~l~~~l~~ 789 (967)
T 1wz2_A 721 ELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMN-DLRWYLRRTEGR----------DDEAKRYVLRTLADV 789 (967)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHH-HHHHHHHHTTTC----------CCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-HHHHHHHhccch----------hHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999987656544 579999998852 123678899999999
Q ss_pred HHHHHhchhhHHHHHHHHhCCCCCCCCCCCcceeccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q 001289 898 GLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQKNERLP 977 (1107)
Q Consensus 898 ~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~a~~P~~~~~~~d~~~e~~~e~v~~vi~~iRslr~~~~~k~i~~~~~ 977 (1107)
+++||||||||+|||||+.|+. .+||+.+.||++++.+.|++++..++.++++++.+|++|+.+ +++....
T Consensus 790 l~~LLaP~~P~~aEeiw~~L~~------~~sv~~~~wP~~~~~~~d~~~~~~~~~~~~~~~~vr~~~~~~---~~~~p~~ 860 (967)
T 1wz2_A 790 WVRLMAPFTPHICEELWEKLGG------EGFVSLAKWPEPVEEWWNETIEAEEEFIRSVMEDIKEIIEVA---KIENAKR 860 (967)
T ss_dssp HHHHHTTTSHHHHHHHHHHSSC------CSCGGGSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHTS---CCCCSBE
T ss_pred HHHHhccccchHHHHHHHhcCC------CCceeccCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHh---CCCCCCe
Confidence 9999999999999999999974 369999999999988889999999999999999999999998 7733366
Q ss_pred EEEEecChhHH
Q 001289 978 AIAFCQTKGVS 988 (1107)
Q Consensus 978 ~~I~~~~~~~~ 988 (1107)
+.|.+.+++..
T Consensus 861 ~~i~~~~~~~~ 871 (967)
T 1wz2_A 861 AYIYTAEDWKW 871 (967)
T ss_dssp EEECCCTTTTT
T ss_pred EEEEECCHHHH
Confidence 77766665443
No 5
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=4e-136 Score=1280.21 Aligned_cols=649 Identities=24% Similarity=0.383 Sum_probs=529.9
Q ss_pred hhhhcCCCchhHHHHHHHHHHhcCCcccCCCCCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccC
Q 001289 141 KQMAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPG 220 (1107)
Q Consensus 141 ~~~~~~y~p~~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G 220 (1107)
.+|.+.|||++||++||++|+++++|++..+.++++|+|++|||||||.|||||+++++++|+++||+||+||+|+|++|
T Consensus 19 ~~m~~~y~~~~iE~kw~~~W~~~~~f~~~~~~~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G 98 (880)
T 4arc_A 19 SHMQEQYRPEEIESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIG 98 (880)
T ss_dssp --CCSSCCHHHHHHHHHHHHHHTTTTCCCCCTTSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCE
T ss_pred ccccccCChHHHHHHHHHHHHhcCCcccCCcCCCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecC
Confidence 45788999999999999999999999988766788999999999999999999999999999999999999999999999
Q ss_pred CCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHH
Q 001289 221 MDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFV 300 (1107)
Q Consensus 221 ~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~ 300 (1107)
|||||+||+..+++ .|.+ +++|++++++.|++||++||+++||+|+++||||.|+++|+++|.
T Consensus 99 ~D~~Glpie~~a~~-----~g~~------------p~~~~~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~ 161 (880)
T 4arc_A 99 WDAFGLPAEGAAVK-----NNTA------------PAPWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFT 161 (880)
T ss_dssp ECCCSTHHHHHHHH-----TTSC------------HHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHH
T ss_pred ccccCcHHHHHHHH-----cCCC------------HHHHHHHHHHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHH
Confidence 99999999887753 4554 368999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEeeeeeeecCCCCccccccccc------------ccccCCcceeeecCccccc--------------c---
Q 001289 301 RLYKEGLIYRDLRLVNWDCVLRTAISDIEVD------------YVDIPKREMRNVPGYEKQV--------------E--- 351 (1107)
Q Consensus 301 ~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe------------~~e~~~~t~~~vp~y~~~~--------------~--- 351 (1107)
+|+++|+||++.++|||||.|+|+|||.||. +++.+ ..+++++.|++.+ .
T Consensus 162 ~L~ekGliY~~~~~v~wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~~-~~f~~i~~y~~~Ll~~l~~~~~wp~~v~~~~ 240 (880)
T 4arc_A 162 ELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIP-QWFIKITAYADELLNDLDKLDHWPDTVKTMQ 240 (880)
T ss_dssp HHHHTTCEEEEEECC------------------------------CEE-EEEECGGGGHHHHHHHGGGCTTSCHHHHHHH
T ss_pred HHHHCCCEEEeceeEeecCCcCCEecchhhhcCcCcCCCCccEEEEcc-ceEEeechhHHHHHHHHhhcccccHHHHHHH
Confidence 9999999999999999999999999997664 44433 2466777665321 1
Q ss_pred ---cc--eEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccc-----------------------------
Q 001289 352 ---FG--VLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHL----------------------------- 397 (1107)
Q Consensus 352 ---~g--~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l----------------------------- 397 (1107)
+| .-.+++|++.+++++|+|||||||||+|+|||||||++++|.++
T Consensus 241 ~~wig~s~g~~v~f~~~~~~~~i~v~TTrP~Tl~g~t~vav~Pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (880)
T 4arc_A 241 RNWIGRSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATMEK 320 (880)
T ss_dssp HHHHCEEEEEEEEEEETTCSSEEEEEESCGGGGGGCCEEEECTTCHHHHHHGGGCHHHHHHHTC----------------
T ss_pred HhhhccccceEEEEEecCCCceEEEEeCCchhhcCCeEEEECCCcHHHHHHhcChHHHHHHHHHHhccCchhhhhcccee
Confidence 12 13578889988888999999999999999999999999987553
Q ss_pred ----cCcEEecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCC---------------CC
Q 001289 398 ----HGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTD---------------DG 458 (1107)
Q Consensus 398 ----~Gk~~~~P~~~~~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~---------------dG 458 (1107)
+|++++||++|+++||+.+++ |++++||||||+|||||++||++|++||||++++|+. +|
T Consensus 321 ~g~~~g~~~~~P~~~~~ipi~~~~y-V~~~~GTGaV~~~Pahd~~D~~~~~~~~Lpi~~vi~~~~~~~~~~~~~~~~~~g 399 (880)
T 4arc_A 321 KGVDTGFKAVHPLTGEEIPVWAANF-VLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKG 399 (880)
T ss_dssp CEEEEEEEEECTTTCCEEEEEEETT-SCSSSTTSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSCCCCCSSSCCCSCC
T ss_pred eccccCcEEecCCCCCEeEEEEeCc-cccCCCCceEEEccCCCHHHHHHHHHcCCCceEeeccCcccccccccccccCCc
Confidence 799999999999999999995 9999999999999999999999999999999999963 45
Q ss_pred ccccCCCCCCCCCChhhHHHHHHHHHHHcCCeeceeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCC
Q 001289 459 KINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDK 538 (1107)
Q Consensus 459 ~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~ 538 (1107)
.+. |+| +|.||++++||++|++.|+++|++.+.
T Consensus 400 ~~~-ns~-~~~Gl~~~eA~~~ii~~L~~~g~~~~~--------------------------------------------- 432 (880)
T 4arc_A 400 VLF-NSG-EFNGLDHEAAFNAIADKLTAMGVGERK--------------------------------------------- 432 (880)
T ss_dssp CBC-SSG-GGTTCCHHHHHHHHHHHHHHTTSEEEE---------------------------------------------
T ss_pred eee-cCc-ccCCCCHHHHHHHHHHHHHHcCCccee---------------------------------------------
Confidence 543 677 899999999999999999999986432
Q ss_pred CceEEeccccHHHHHHHhccCCCeeeeecCCCcccceeEEEccCcch------hhccCCCCC-ceEEecCHHHHHHHHhh
Q 001289 539 KKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDE------LKELGSYND-HWIVARDEKEALAVANK 611 (1107)
Q Consensus 539 ~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~------~~~~~~~~~-~w~~~~~~~ea~~~~~~ 611 (1107)
+.+ +++|||||||||||+|||+|||..|+.. ++...+.+- ..-.+.....+..+...
T Consensus 433 --v~y--------------rlrDW~iSRQRyWG~PIPi~~c~~cg~v~v~~~~Lpv~lp~~~~~~~~g~pl~~~~~w~~~ 496 (880)
T 4arc_A 433 --VNY--------------RLRDWGVSRQRYWGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDGITSPIKADPEWAKT 496 (880)
T ss_dssp --EEE--------------SCCCEECEESCSSSCBCCEEEETTSCEEECCGGGCSCCCCSSCCCCSSSCHHHHSTTTTEE
T ss_pred --EEE--------------EcccceeeeeeccCCcceEEEECCCCeEeCChHHCccccchhcccCCCCCchHhCccceee
Confidence 111 5899999999999999999999887631 111111100 00012222222223345
Q ss_pred hcCCCCcccccCCCceeeEeccCCcccccccCCCCC------hhhhhhCCcCccccccc--ccchHHHHHHHHHHH----
Q 001289 612 KFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDT------DDLKAFYPTSVLETGHD--ILFFWVARMVMLGIK---- 679 (1107)
Q Consensus 612 ~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~~~------~d~~~~yP~dl~~tG~D--il~fW~armi~~~~~---- 679 (1107)
.||+ ..++|++|||||||||+ |||+.++||+++ +++++|||+|++++|.| |+|+|++|+....+.
T Consensus 497 ~cpg--~~~~retDtmDtw~dSs-wy~~r~~~p~~~~~~~~~~~~~~~~PvD~yigG~EHailHllyaRf~~~~L~~~g~ 573 (880)
T 4arc_A 497 TVNG--MPALRETDTFDTFMESS-WYYARYTCPQYKEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGM 573 (880)
T ss_dssp ESSS--SEEEECCCEECTTTGGG-THHHHTTSTTCCSSSCCHHHHHHHCSEEEEECCGGGTTTHHHHHHHHHHHHHHTTS
T ss_pred ccCC--CcceeCCCcCCCcccCc-HHHHhhcCCCccccccChHHHhccCCceEeecchhhHHHHHHHHHHHHHHHHHhhc
Confidence 6773 36899999999999998 899999999853 56889999999999976 788888886533322
Q ss_pred hcCCCCccEEEEcceee-------CCCCc------------------------------------cccccCCCccCcccc
Q 001289 680 LGGEVPFTKVYLHPMIR-------DAHGR------------------------------------KMSKSLGNVIDPLEV 716 (1107)
Q Consensus 680 l~g~~PFk~V~~Hg~v~-------D~~G~------------------------------------KMSKSlGNvIdP~dv 716 (1107)
+.++.||++|++||||+ |.+|+ |||||+||||||.|+
T Consensus 574 ~~~~ePFk~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~di 653 (880)
T 4arc_A 574 VNSDEPAKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVM 653 (880)
T ss_dssp CCCSCSEEEEECCCCEEEEEEEEECTTSCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEEEECCTTTTCCCCHHHH
T ss_pred ccCCCChHHeEEeceEeecceeccccCCcccccCHHHhccccccccccccccccCCccccccccccccCcCCCCCCHHHH
Confidence 36789999999999995 89998 999999999999999
Q ss_pred ccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHHHHHHHHHHHHH
Q 001289 717 INGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNA 796 (1107)
Q Consensus 717 I~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r~f~nKl~N~ 796 (1107)
|+ +||||+||||+++.++.++|++|+.+.++++++|++++||+
T Consensus 654 Ie-------------------------------------kYGADalRl~ll~~~~~~~dl~~s~~~ie~a~rfl~rlwn~ 696 (880)
T 4arc_A 654 VE-------------------------------------RYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKL 696 (880)
T ss_dssp HH-------------------------------------HHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHHHHHHHH
T ss_pred HH-------------------------------------HcCchHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 99 99999999999999899999999999999999999999999
Q ss_pred HHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHhHhHHHHHhhcccccC
Q 001289 797 VRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLN-SYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAG 875 (1107)
Q Consensus 797 ~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e-~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~ 875 (1107)
+++++..... + ......++..|+||+++++++++.++++|+ +|+|+.|++++|+|+ ++++. | .
T Consensus 697 ~~~~~~~~~~---~--~~~~~~l~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~l~efv-n~l~k-~--------~- 760 (880)
T 4arc_A 697 VYEHTAKGDV---A--ALNVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELM-NKLAK-A--------P- 760 (880)
T ss_dssp HHHHHHTCCC---C--CCCSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-HHHHT-S--------C-
T ss_pred HHHHHhcccc---c--ccccccCCHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH-HHHHh-h--------h-
Confidence 9987654211 1 111224678999999999999999999999 799999999999997 55432 1 1
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCcceeccCCCCCC
Q 001289 876 DNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVE 939 (1107)
Q Consensus 876 ~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~a~~P~~~~ 939 (1107)
.+. ..++.+|+.+++.+++||||||||+|||||+.|+. .+||+.++||++++
T Consensus 761 ~~~------~~~~~~l~~~l~~ll~LLaPf~PhiaEElW~~Lg~------~~sv~~~~wP~~d~ 812 (880)
T 4arc_A 761 TDG------EQDRALMQEALLAVVRMLNPFTPHICFTLWQELKG------EGDIDNAPWPVADE 812 (880)
T ss_dssp CSS------HHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTC------SSCGGGSCCCCCCH
T ss_pred ccc------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHcCC------CCeEEeCCCCCCCH
Confidence 111 23567899999999999999999999999999985 36999999999875
No 6
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=9.9e-134 Score=1268.30 Aligned_cols=667 Identities=23% Similarity=0.383 Sum_probs=544.6
Q ss_pred CCCchhHHHHHHHHHHhcCCcccCC-CCCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCcc
Q 001289 146 EYNPSSVEKSWYSWWENSGYFIADN-KSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHA 224 (1107)
Q Consensus 146 ~y~p~~vE~~w~~~W~~~~~f~~~~-~~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~ 224 (1107)
.|||..+|++||++|+++++|++.. +.++++|++++|||||||.||||||++++++|+++||+||+||+|+|++|||||
T Consensus 3 ~y~~~~iE~kw~~~W~~~~~f~~~~~~~~~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~ 82 (878)
T 2v0c_A 3 KYNPHAIEAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAF 82 (878)
T ss_dssp CCCCTTHHHHHHHHHHHHTTTCCCSCCC---EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCS
T ss_pred CCCHHHHHHHHHHHHHHcCCcccCcccCCCCCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcc
Confidence 6999999999999999999999987 566789999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHH
Q 001289 225 GIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYK 304 (1107)
Q Consensus 225 Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~ 304 (1107)
|+||+..+++ .|.+ +++|++++++.|++||++||+++||+|+++|||+.|+++++++|.+|++
T Consensus 83 Glpie~~a~k-----~g~~------------~~~~~~~~~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~ 145 (878)
T 2v0c_A 83 GLPAENAALK-----FGVH------------PKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWE 145 (878)
T ss_dssp SHHHHHHHHH-----TTCC------------HHHHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHH-----cCCC------------HHHHHHHHHHHHHHHHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHH
Confidence 9999988764 4654 4689999999999999999999999999999999999999999999999
Q ss_pred cCCEEEeeeeeeecCCCCcccccccccccc--c-CCc---------ceeeecCcccccc-------------------cc
Q 001289 305 EGLIYRDLRLVNWDCVLRTAISDIEVDYVD--I-PKR---------EMRNVPGYEKQVE-------------------FG 353 (1107)
Q Consensus 305 ~GlIyr~~~~V~W~p~~~TaLsd~EVe~~e--~-~~~---------t~~~vp~y~~~~~-------------------~g 353 (1107)
+|+||++.++|||||.|+|+|||+||++.. . .+. .+++++.|++.+. +|
T Consensus 146 kGliY~~~~~v~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~~~~p~~~~~~~~~wi~ 225 (878)
T 2v0c_A 146 KGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIG 225 (878)
T ss_dssp TTCEEEEEEEEEEETTTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECGGGGHHHHHHTTTTCBSCHHHHHHHHHHHC
T ss_pred CCCEEEcceeEEEeCCCCCCcCHHHHhcCCCcccCCCceEEEecceeeEecchhHHHHHHHhhhcCCCHHHHHHHHHHhc
Confidence 999999999999999999999999997432 1 121 2456666653210 01
Q ss_pred --eEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccc----------------------------------
Q 001289 354 --VLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHL---------------------------------- 397 (1107)
Q Consensus 354 --~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l---------------------------------- 397 (1107)
.-..++|++.+++.+|+|||||||||+|+|||||||+++++.++
T Consensus 226 ~s~g~~v~f~~~~~~~~l~v~TTrP~Tl~g~~~vav~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 305 (878)
T 2v0c_A 226 RSEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQAEGREKTGV 305 (878)
T ss_dssp EEEEEEEEEEBTTSSCEEEEEESCGGGGGGCCEEEECTTSHHHHHHSCGGGHHHHHHHHHHHHTSCHHHHHCSSSCCCCE
T ss_pred cccCceEEEEecCCCceEEEEeCCchhhhCcEEEEEcCCCeeeehhccchhHHHHHHHHHHHhhhhhhhhhhccceeeeE
Confidence 23568899988889999999999999999999999999987554
Q ss_pred -cCcEEecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCC---------------CCccc
Q 001289 398 -HGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTD---------------DGKIN 461 (1107)
Q Consensus 398 -~Gk~~~~P~~~~~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~---------------dG~~~ 461 (1107)
+|++++||++++.+||+.+++ |++++||||||+|||||++||++|++||||++++|++ +|.+.
T Consensus 306 ~~g~~~~~P~~~~~ipi~~~~~-V~~~~GTG~V~~~PaHd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~~~~g~~~ 384 (878)
T 2v0c_A 306 FLGAYALNPATGERIPIWTADY-VLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMV 384 (878)
T ss_dssp EEEEEEECTTTCCEEEEEECTT-SCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCCEECSSSCCCSSCSSCCCSCCEEC
T ss_pred ecCcEEECCCCCCEeEEEEeCc-ccCCCCCceEEeCCCCCHHHHHHHHHcCCCceeeeCCCCccccccccccccCCeeEe
Confidence 799999999999999999995 9999999999999999999999999999999999985 33342
Q ss_pred cCCCCCCCCCChhhHHHHHHHHHHHcCCeeceeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCce
Q 001289 462 SNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKL 541 (1107)
Q Consensus 462 ~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i 541 (1107)
|+| +|.||++++||++|++.|+++|+... .+
T Consensus 385 -ns~-~~~Gl~~~eA~~~Ii~~L~~~g~~~~-----------------------------------------------~v 415 (878)
T 2v0c_A 385 -NSG-PFDGTESEEGKRKVIAWLEEKGLGKG-----------------------------------------------RV 415 (878)
T ss_dssp -SSG-GGTTCBHHHHHHHHHHHHHHHTSEEE-----------------------------------------------EE
T ss_pred -cCC-CCCCcCHHHHHHHHHHHHHHCCCCCC-----------------------------------------------ce
Confidence 567 89999999999999999999998421 11
Q ss_pred EEeccccHHHHHHHhccCCCeeeeecCCCcccceeEEEccCcch------hhccCCCCCce--EE--ec-CHHHHHHHHh
Q 001289 542 ELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDE------LKELGSYNDHW--IV--AR-DEKEALAVAN 610 (1107)
Q Consensus 542 ~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~------~~~~~~~~~~w--~~--~~-~~~ea~~~~~ 610 (1107)
.+ +++|||||||||||||||+|||..|+.. ++...+....+ .. +. ....+.....
T Consensus 416 ~~--------------rlrDW~ISRQR~WG~PIPi~~~~~~~~v~v~~~~lpv~lp~~~~~~~~~~~g~~pl~~~~~~~~ 481 (878)
T 2v0c_A 416 TY--------------RLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYE 481 (878)
T ss_dssp EE--------------SCCCEECEESCSSSEECCEEEETTTEEEECCGGGCCCCCCCCCCHHHHSCSSSCGGGGCHHHHE
T ss_pred EE--------------ecccchhhcccccCCcccEEEECCCCeEecCHHHccccccchhhhhccccCCCChhhhhHhhcC
Confidence 11 5899999999999999999999876431 11000000001 00 11 1122233344
Q ss_pred hhcCCCCcccccCCCceeeEeccCCcccccccCCCCC------hhhhhhCCcCccccccc--ccchHHHHHHHHHHH---
Q 001289 611 KKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDT------DDLKAFYPTSVLETGHD--ILFFWVARMVMLGIK--- 679 (1107)
Q Consensus 611 ~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~~~------~d~~~~yP~dl~~tG~D--il~fW~armi~~~~~--- 679 (1107)
..||.++..++|++|||||||||+ ||+..++||+++ +++++|||+|++++|.| |+|+|++||++..+.
T Consensus 482 ~~cp~cg~~~~retDtmDtwfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~P~D~yi~G~d~~ilhl~y~r~~~~~l~~~g 560 (878)
T 2v0c_A 482 TTCPKCGGPAKRDTDTMDTFFDSS-WYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLG 560 (878)
T ss_dssp EECTTTCSEEEECCCEECHHHHHT-SHHHHTTSTTCSSSSCCHHHHHHHCSBSEEECCGGGTTTHHHHHHHHHHHHHHTT
T ss_pred CcCCCCCCcceecccccccccccc-chhhhccCccccccccCHHHHccCCCCeEEEechHHHHHHHHHHHHHHHHHHHhh
Confidence 567777778999999999999997 788888999863 67899999999999976 688999999776554
Q ss_pred -hcCCCCccEEEEcceeeCC----------------------------------------------CC-------ccccc
Q 001289 680 -LGGEVPFTKVYLHPMIRDA----------------------------------------------HG-------RKMSK 705 (1107)
Q Consensus 680 -l~g~~PFk~V~~Hg~v~D~----------------------------------------------~G-------~KMSK 705 (1107)
+.++.||++|++||||+|. +| +||||
T Consensus 561 ~~~~~~Pfk~l~~~G~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~KMSK 640 (878)
T 2v0c_A 561 MVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSK 640 (878)
T ss_dssp SCSCSCSBSBEECCCCEEEEEEEEEEEEETTEEECCHHHHHHHTCSCSEEEHHHHHHTTCEEEECTTSSEEEEEEEECSG
T ss_pred cccCCCchHhheecceEeccceeccccccccceeccccccccccccCchhhhhccccccceeeccCCCCchhhhHHHhhc
Confidence 4668999999999999984 99 99999
Q ss_pred cCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHH
Q 001289 706 SLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG 785 (1107)
Q Consensus 706 SlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~ 785 (1107)
|+||||||.|+|+ +||||+|||||++.++.++|++|+.+.+.+
T Consensus 641 SkGNvVdP~diI~-------------------------------------~yGADalRl~ll~~~~~~~D~~fs~~~v~~ 683 (878)
T 2v0c_A 641 SKGNGVMVGPFVK-------------------------------------EQGADIARITILFAAPPENEMVWTEEGVQG 683 (878)
T ss_dssp GGTCCCBHHHHHH-------------------------------------HSCHHHHHHHHHHHSCTTSCEEECHHHHHH
T ss_pred cCCCcccHHHHHH-------------------------------------HcCccHHHHHHhccCCCCCCceeCHHHHHH
Confidence 9999999999999 999999999999989999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHH
Q 001289 786 YRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVF 865 (1107)
Q Consensus 786 ~r~f~nKl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Y 865 (1107)
.++|++++||++++....+..... ......++..|+||+++++.+++.++++|++|+|+.|++++++|+ ++++ .|
T Consensus 684 ~~~~l~Rl~n~~~~~~~~~~~~~~---~~~~~~l~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~l~~f~-~~l~-k~ 758 (878)
T 2v0c_A 684 AWRFLNRIYRRVAEDREALLETSG---VFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFL-NALY-EY 758 (878)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCC---CCCGGGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHH-HH
T ss_pred HHHHHHHHHHHHHHHHhccccccc---ccCcccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH-HHHh-hh
Confidence 999999999999887665321000 111224578899999999999999999999999999999999998 5664 45
Q ss_pred HHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCcceeccCCCCCCCCCcHH
Q 001289 866 IEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWTDER 945 (1107)
Q Consensus 866 ie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~a~~P~~~~~~~d~~ 945 (1107)
.+. + .. +.+|+.+|+.+++||||||||+|||||+.|+ .+||+.++||++++.+.
T Consensus 759 ~~~-------~-~~--------~~~l~~~l~~l~~LLaPf~P~~aEElw~~Lg-------~~sv~~~~wP~~d~~~l--- 812 (878)
T 2v0c_A 759 RKD-------R-PV--------TPVYRTAIRYYLQMLFPFAPHLAEELWHWFW-------PDSLFEAGWPELDEKAL--- 812 (878)
T ss_dssp HHH-------C-CS--------CHHHHHHHHHHHHHHTTTSHHHHHHHHHHHC-------SSCGGGSCCCCCCGGGG---
T ss_pred ccc-------c-hh--------HHHHHHHHHHHHHHHcccchHHHHHHHHHcC-------CCceeecCCCCCCHHHH---
Confidence 432 1 11 1579999999999999999999999999997 26899999999886543
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001289 946 AEFEMDLVESTVRCIRS 962 (1107)
Q Consensus 946 ~e~~~e~v~~vi~~iRs 962 (1107)
.++.++.+++|++++|.
T Consensus 813 ~~~~~~~~vqvngkvR~ 829 (878)
T 2v0c_A 813 EKDVVEVAVQVNGAVAG 829 (878)
T ss_dssp C----------------
T ss_pred HHHHHHHHHhhHHHHHH
Confidence 45678888888877765
No 7
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.4e-129 Score=1232.38 Aligned_cols=682 Identities=22% Similarity=0.348 Sum_probs=561.6
Q ss_pred cCCCchhHHHHHHHHHHhcCCcccCCCC--CCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCC
Q 001289 145 KEYNPSSVEKSWYSWWENSGYFIADNKS--SKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMD 222 (1107)
Q Consensus 145 ~~y~p~~vE~~w~~~W~~~~~f~~~~~~--~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D 222 (1107)
..|||..+|++||++|+++++|++..+. ++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|++|||
T Consensus 2 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D 81 (810)
T 1wkb_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWH 81 (810)
T ss_dssp --CCCHHHHHHHHHHHHHTTTTCCCGGGSCGGGEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBB
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccCchhcCCCCcEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccC
Confidence 4699999999999999999999987642 36799999999999999999999999999999999999999999999999
Q ss_pred ccChhHHHHHHHHHH-----HHhCCCccccChHHH--HHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCC--hhhHH
Q 001289 223 HAGIATQVVVEKKLM-----RERKLTRHDIGREQF--VSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMD--EKRSK 293 (1107)
Q Consensus 223 ~~Gi~~q~~vEk~l~-----~~~g~~~~d~~re~f--~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d--~~~~~ 293 (1107)
|||+|++.++++... .+.-...+.+.++++ ...|++|++++.+.|++||++||+++||+++|+||| |.|++
T Consensus 82 ~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~ 161 (810)
T 1wkb_A 82 ITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSK 161 (810)
T ss_dssp CCBSHHHHHHHHHHTTCHHHHHHHHHTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHH
T ss_pred CCCChHHHHHHHhcccCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHH
Confidence 999999988875210 000000123334433 236999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHcCCEEEeeeeeeecCCCCcccccccccccccCCcceeeecCcccccccceEEEEeeecCCCc--ceEEE
Q 001289 294 AVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGL--GEIVV 371 (1107)
Q Consensus 294 ~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~--~~i~v 371 (1107)
+|+++|.+|+++|+|||+.++|+|||.|+|+|||+||++.+... .+..++++|++.+++ .+|+|
T Consensus 162 ~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~La~~ev~~~~~~~--------------~~~~~~v~f~~~~~~~~~~l~v 227 (810)
T 1wkb_A 162 FIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVP--------------ILDYIIIKFELRENGEVIYLPA 227 (810)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTCCSBCSSCC--------------EEEEEEEEEECCSSCSCCEEEE
T ss_pred HHHHHHHHHHHCCCEEECCeeeeccCCcCCCccHHHHhcCCCCc--------------cceeEEEEEEccCCCCceEEEE
Confidence 99999999999999999999999999999999999998764322 234577899997754 68999
Q ss_pred eeccccccccCcEEEEcCCC-------------c------------cc-------------ccccCcEEecCCCCCccce
Q 001289 372 ATTRVETMLGDTAIAIHPED-------------A------------RY-------------SHLHGKFAIHPFNGRKIPI 413 (1107)
Q Consensus 372 aTTrPeT~~gdtaiaV~P~d-------------~------------ry-------------~~l~Gk~~~~P~~~~~iPI 413 (1107)
||||||||+|++||||||+. + +| .+|+|++++||++++.+||
T Consensus 228 ~TTrP~Tl~g~~av~v~P~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~ipi 307 (810)
T 1wkb_A 228 ATLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVII 307 (810)
T ss_dssp EESCGGGGGGCCEEEECTTSCEEEEEEEETTEEEEEEEEHHHHHHHTTSSCEEEEEEECTTTTTTTCEEECSSSCCEEEE
T ss_pred EcCCchHhhhhhEEEECCCCcEEEEEecCCCcceeeeeHHHHHHHHHhhhcceEEEEEEEchhhcCCEEECCCCCCeeEE
Confidence 99999999999999999993 2 23 2699999999999999999
Q ss_pred EecCccccCCCCCCceecCCCCCcchHHH----------HHHhCCc--------cceeeCC-------------------
Q 001289 414 ICDAILVDPKFGTGAVKITPAHDPNDFDV----------GKRHNLE--------FINIFTD------------------- 456 (1107)
Q Consensus 414 i~d~~~Vd~~~GTG~V~~tPaHd~~D~~~----------~~~~~L~--------~i~iid~------------------- 456 (1107)
+.+++ |++++|||+||+|||||++||++ |++|||+ ++++|+.
T Consensus 308 ~~~~~-V~~~~GTG~V~~~Pah~~~D~~~~~~~~~~~~~~~k~~l~~~~~~~l~~~~vi~~~~~~~~~~~~~~~~~~i~~ 386 (810)
T 1wkb_A 308 LPAEF-VDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKS 386 (810)
T ss_dssp EECTT-SCTTSTTSCEEECTTTCHHHHHHHCCCSCCSCCCTTCSCCCCCC----------------CCTTCCSGGGTSCC
T ss_pred EecCc-ccCCCCceeEEeCCCCCHHHHHHHHhhccchhHHHHcCCChhhcccccceeeeccCCccccchhhhhhhccCCC
Confidence 99995 99999999999999999999986 4678876 7888742
Q ss_pred --------------------CCccccCCCCCCCCCChhhHHHHHHHHHHHcCCeeceeccccccceeccCCCeeEec-cc
Q 001289 457 --------------------DGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPM-IK 515 (1107)
Q Consensus 457 --------------------dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~-~~ 515 (1107)
+|+|+ +| +|.|+.+++||+.|++.|+++|++...+++.| +|+|+|||++|+++ ++
T Consensus 387 ~~d~~~~~~~~~~~~~~~~~~G~~~--~g-~~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~-~~~~~r~g~~vi~~~~~ 462 (810)
T 1wkb_A 387 QKDKEKLEQATKTIYKAEYHKGIFK--VP-PYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAE-KNVISRFGNRAVIKIIH 462 (810)
T ss_dssp CTTCSCTHHHHHHHHHHHHHSCEEC--SG-GGTTEEHHHHHHHHHHHHHTTTSEEEEEEESS-SCCBCTTSCBCEEEEEE
T ss_pred cchhhhhhhhhhhhhhccccCceEe--cc-CcCCeEHHHhHHHHHHHHHhCCCeeeEEecCC-CCcCCCCCCEEEEEecC
Confidence 57776 67 89999999999999999999999987777655 79999999999888 79
Q ss_pred ccccccccH--HHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeecCCCccccee---EEEccCcchhhccC
Q 001289 516 PQWYVNCNS--MAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPA---WYVTLEDDELKELG 590 (1107)
Q Consensus 516 ~QWfv~~~~--~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~---~~~~~~~~~~~~~~ 590 (1107)
+||||++++ +++.+++++ +++.|+|+..++++.+||++++||||||||+||||||+ |.+... .++.
T Consensus 463 ~qwF~~~~~~~~~~~~l~~~-----~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~d~~~~~~~~----~~~~ 533 (810)
T 1wkb_A 463 DQWFIDYGNPEWKEKARKAL-----ERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESL----SDST 533 (810)
T ss_dssp EEEEECTTCHHHHHHHHHHH-----HTSEEESGGGHHHHHHHHHHCCCEECEESSSBSCEETTEEEEEECTT----TSSS
T ss_pred CceeEecChHHHHHHHHhhh-----cccEEECcchhchHHHHhhcccCccccccCCCCCcCCcCcceecccC----CCCc
Confidence 999999995 899999999 56899999999999999999999999999999999993 444211 1111
Q ss_pred CCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEecc----CCc-cc-ccccCCCC-----ChhhhhhCCcCcc
Q 001289 591 SYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSS----GLF-PL-SVLGWPDD-----TDDLKAFYPTSVL 659 (1107)
Q Consensus 591 ~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdS----gl~-p~-s~lgwp~~-----~~d~~~~yP~dl~ 659 (1107)
.|...+.+.+..+++ ...++.... .-.++++|+||++ |.+ ++ ...|||.+ +++|++|||.|++
T Consensus 534 iYv~~~~~~~~~~~~----~~~~~~~~~--~l~~~~~d~~~~~~~~~g~~~~~~~~sg~~~~~~~~~~~~~~~~~p~Di~ 607 (810)
T 1wkb_A 534 IYMAYYTISRHINKL----RQEGKLDPE--KLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWR 607 (810)
T ss_dssp SHHHHHHHHHHHHHH----HHTTCCCGG--GCCHHHHHHHHHSCCCHHHHHHHHHHHSCCHHHHHHHHHHHHHHCSCSEE
T ss_pred eeeehhhhHHHHHHh----HhhcCCCHH--HcCccceeeeeccccccCccccchhhhCCCHHHHHhhHHHHHhhCCceEE
Confidence 111011111112111 112221111 1245899999964 321 11 24578754 3578999999999
Q ss_pred cccccccchHHHHHHHHHHHhcCCCCc-cEEEEcceeeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCChHH
Q 001289 660 ETGHDILFFWVARMVMLGIKLGGEVPF-TKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKE 738 (1107)
Q Consensus 660 ~tG~Dil~fW~armi~~~~~l~g~~PF-k~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e 738 (1107)
++|+||+|||...+++++..+.+..|| +.|++||||++ +|+|||||+||||+|.++|+
T Consensus 608 ~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~dli~-------------------- 666 (810)
T 1wkb_A 608 CSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIE-------------------- 666 (810)
T ss_dssp EEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEE-TTBCCCTTTTCCCBHHHHHH--------------------
T ss_pred eecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEe-CCeehhhcCCCcCCHHHHHH--------------------
Confidence 999999999999999999888887565 99999999996 89999999999999999998
Q ss_pred HHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCC
Q 001289 739 LEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHN 818 (1107)
Q Consensus 739 ~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r~f~nKl~N~~rf~l~~l~~~~~p~~~~~~~~ 818 (1107)
+||+|+|||||++.++.++|++|+.+.+.++++|++++||+++++.+.. .|. ...
T Consensus 667 -----------------~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~----~~~----~~~ 721 (810)
T 1wkb_A 667 -----------------ENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFAEYE----VKG----NVE 721 (810)
T ss_dssp -----------------HHCHHHHHHHHHHHCCTTCCEEECHHHHHHHHHHHHHHHHHHHHHHTCC----CCS----CCC
T ss_pred -----------------HcChHHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhcc----Ccc----ccc
Confidence 8999999999998889999999999999999999999999999886431 111 123
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHHHHhhcccccCCCcccHHHHHHH-HHHHHHHHHH
Q 001289 819 LPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAA-QHVLWVCLET 897 (1107)
Q Consensus 819 ~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~~~~~~~~~~~~a-~~~L~~~l~~ 897 (1107)
.+..|+||+++++.+++.+.++|++|+|+.|+.+++.+++ ..+|+|++.+|+. + . ++ +.+|+.+|+.
T Consensus 722 ~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~~~~~l~-~~~n~yi~~~k~~----~-----~--~~~~~~l~~~l~~ 789 (810)
T 1wkb_A 722 LKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIM-NDLRWYLRRTEGR----D-----D--EAKRYVLRTLADV 789 (810)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHH-HHHHHHHHHTTTC----C-----C--HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HHHHHHHHHhcCc----c-----h--hHHHHHHHHHHHH
Confidence 5678999999999999999999999999999997754443 4589999998852 1 1 23 6799999999
Q ss_pred HHHHHhchhhHHHHHHHHhCC
Q 001289 898 GLRLLHPFMPFVTEELWQRLP 918 (1107)
Q Consensus 898 ~l~LL~PfmPfitEelwq~L~ 918 (1107)
+++||||||||+|||||++|+
T Consensus 790 l~~lLaP~~P~~aEelw~~Lg 810 (810)
T 1wkb_A 790 WVRLMAPFTPHICEELWEKLG 810 (810)
T ss_dssp HHHHHTTTSHHHHHHHHHHCC
T ss_pred HHHHHhhhhhHHHHHHHHhcC
Confidence 999999999999999999985
No 8
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=4.6e-93 Score=863.64 Aligned_cols=471 Identities=20% Similarity=0.250 Sum_probs=398.3
Q ss_pred CCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHH
Q 001289 173 SKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQF 252 (1107)
Q Consensus 173 ~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f 252 (1107)
.+++|+|++|||||||.||||||++++++|+++||+||+||+|+|++||||||+|||.++++ +|+++
T Consensus 7 ~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k-----~g~~~-------- 73 (542)
T 3u1f_A 7 VEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQ-----KQVSP-------- 73 (542)
T ss_dssp CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHH-----TTSCH--------
T ss_pred CCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHH-----cCCCH--------
Confidence 45689999999999999999999999999999999999999999999999999999888764 57765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCcccccccccc
Q 001289 253 VSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDY 332 (1107)
Q Consensus 253 ~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~ 332 (1107)
++|+++|++.|++||++||+++|| ++.||||.|.++|+++|.+|+++|+||++.++|+|||.|+|+|+|.||+.
T Consensus 74 ----~e~~~~~~~~~~~~~~~lgi~~D~--~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~ 147 (542)
T 3u1f_A 74 ----YDFTTAVAGEFKKCFEQMDYSIDY--FIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITD 147 (542)
T ss_dssp ----HHHHHHHHHHHHHHHHHHTCCCSE--EEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEE
T ss_pred ----HHHHHHHHHHHHHHHHHhCCccCc--CccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhc
Confidence 478999999999999999999998 46799999999999999999999999999999999999999999987742
Q ss_pred cccCCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEecCCCCCccc
Q 001289 333 VDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIP 412 (1107)
Q Consensus 333 ~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~P~~~~~iP 412 (1107)
.
T Consensus 148 ~------------------------------------------------------------------------------- 148 (542)
T 3u1f_A 148 G------------------------------------------------------------------------------- 148 (542)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred eEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCeec
Q 001289 413 IICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRG 492 (1107)
Q Consensus 413 Ii~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~ 492 (1107)
++ .+|
T Consensus 149 -------~~-----------------------------------------~~g--------------------------- 153 (542)
T 3u1f_A 149 -------VD-----------------------------------------KDG--------------------------- 153 (542)
T ss_dssp -------EC-----------------------------------------TTS---------------------------
T ss_pred -------cc-----------------------------------------ccC---------------------------
Confidence 00 111
Q ss_pred eeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHhcc-CCCeeeeecCC--
Q 001289 493 AKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEA-IRDWCVSRQLW-- 569 (1107)
Q Consensus 493 ~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~~-l~DWcISRQ~~-- 569 (1107)
+.+++|+|||++++++.++|||++++++++++++++ +++...+.|+..++.+.+|+++ ++|||||||||
T Consensus 154 -----~~~~~~~~sg~~ve~~~~~~~f~~l~~~~~~l~~~~---~~~~~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~ 225 (542)
T 3u1f_A 154 -----NPCKVSLESGHVVTWVSEENYMFRLSAFRERLLEWY---HANPGCIVPEFRRREVIRAVEKGLPDLSVSRARATL 225 (542)
T ss_dssp -----CEEEEETTTCCBEEEEEEEEEEECGGGGHHHHHHHH---HHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGG
T ss_pred -----ccccccCCCCCcceeeccccceecchhHHHHHHHHH---hhcccccCCchhhHhHhhhhhccccccCccccccCc
Confidence 124789999999999999999999999999999999 7778889999999999999975 99999999998
Q ss_pred --CcccceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCC-
Q 001289 570 --WGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDD- 646 (1107)
Q Consensus 570 --WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~~- 646 (1107)
||+|||.+ +..++++|||+...+++..+++.+
T Consensus 226 ~~WGipiP~~---------------------------------------------~~~~~~vw~da~~~~~~~~~~~~~~ 260 (542)
T 3u1f_A 226 HNWAIPVPGN---------------------------------------------PDHXVYVWLDALTNYLTGSRLRVDE 260 (542)
T ss_dssp TTCSCEETTE---------------------------------------------EEEEECHHHHHHTHHHHHHTEEECT
T ss_pred CCCCCccCCC---------------------------------------------cCeeeeeeeccchhhhhhhhccccc
Confidence 99999942 113667777766555544332211
Q ss_pred ---------ChhhhhhCCcCcccccccccch----HHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCc
Q 001289 647 ---------TDDLKAFYPTSVLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDP 713 (1107)
Q Consensus 647 ---------~~d~~~~yP~dl~~tG~Dil~f----W~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP 713 (1107)
..+...+||.|++++|+||++| |+++|++.| ..|++.|++||++. .+|+|||||+||||+|
T Consensus 261 ~g~~~~~~d~~~~~~~~p~d~~~~G~D~~~fh~~~~~a~l~~~g-----~~~~~~v~~hg~l~-~~G~KMSKSlGNvi~p 334 (542)
T 3u1f_A 261 SGKEVSLVDDFNELERFPADVHVIGKDILKFHAIYWPAFLLSAG-----LPLPKKIVAHGWWT-KDRKKISKSLGNVFDP 334 (542)
T ss_dssp TSCEEEECSSGGGTTCCSCSEEEEEGGGHHHHHTHHHHHHHHHT-----CCCCSCEEEECCCE-ETTBCCBTTTTBCCCH
T ss_pred cCCcccccchhhhhcCCcceEEEecccccccccchhHHHHHhhc-----ccccceecccccee-cCCceeccccCCCCCh
Confidence 1122245899999999999998 778777654 45789999999976 6899999999999999
Q ss_pred cccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHHHHH--HHH
Q 001289 714 LEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQ--WCN 791 (1107)
Q Consensus 714 ~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r~--f~n 791 (1107)
.|+|+ +||+|+|||||++.++.++|++|+.+.+.+..+ |+|
T Consensus 335 ~~~i~-------------------------------------~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~~l~n 377 (542)
T 3u1f_A 335 VEKAE-------------------------------------EFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELAD 377 (542)
T ss_dssp HHHHH-------------------------------------HHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHHHTTTT
T ss_pred hHHHh-------------------------------------hcCchHHHHHHHhcCcccccccccHHHHHHHhhhHHHH
Confidence 99999 899999999999989999999999999977543 999
Q ss_pred HHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHHHHhhcc
Q 001289 792 KLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKP 871 (1107)
Q Consensus 792 Kl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~ 871 (1107)
+|||++++++....+ +... .......+..|+||+++++.+++.++++|++|+|+.|++.|++|+ ++||+|++..||
T Consensus 378 ~l~N~~~r~~~~~~~-~~~~-~~~~~~~~~~d~~il~~l~~~~~~~~~~~~~~~~~~a~~~i~~~~--~~~n~Y~~~~~p 453 (542)
T 3u1f_A 378 TLGNLVMRCTSAKIN-VNGE-WPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVL--RAINAYVTDMAP 453 (542)
T ss_dssp THHHHHHHHHCTTTS-TTSB-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhhhc-ccCC-CCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcCc
Confidence 999999988765332 2111 112235678999999999999999999999999999999999997 689999999999
Q ss_pred c-ccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCC
Q 001289 872 Y-FAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 919 (1107)
Q Consensus 872 ~-l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~ 919 (1107)
| +..++++ +.+++..+++.++..+++||||||||+|||||++|+.
T Consensus 454 w~l~k~d~~---~~~~~l~~~~~~l~~~~~ll~P~~P~~aeei~~~Lg~ 499 (542)
T 3u1f_A 454 WKLVKTDPE---RLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGV 499 (542)
T ss_dssp HHHHHHCHH---HHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTC
T ss_pred hhhhcCCHH---HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHCCC
Confidence 8 3333333 4455666777788888999999999999999999975
No 9
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=8.3e-91 Score=864.20 Aligned_cols=492 Identities=19% Similarity=0.268 Sum_probs=410.0
Q ss_pred CcEEEECCCCCCCCCCCchhhHH-hHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHH
Q 001289 175 PSFVIVLPPPNVTGALHIGHALT-TAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFV 253 (1107)
Q Consensus 175 ~~f~i~~pPPyvnG~LHiGHal~-~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~ 253 (1107)
++|+|++|||||||.||||||++ ++++|+++||+||+||+|+|++||||||+|||.++++ +|++
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k-----~G~~---------- 66 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK-----EGRS---------- 66 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHH-----HTCC----------
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHH-----cCCC----------
Confidence 47999999999999999999998 9999999999999999999999999999999999875 3766
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCccccccccccc
Q 001289 254 SEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYV 333 (1107)
Q Consensus 254 ~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~ 333 (1107)
+++|+++|++.|+++|++||+++|| +++|+||.|.++|+++|.+|+++|+||++.++|+|||.|+|+|+|.+|+.
T Consensus 67 --p~e~~~~~~~~~~~~~~~lgis~D~--~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~g- 141 (722)
T 1rqg_A 67 --PREIVDEFHEQIKITFQRAKISFDF--FGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIG- 141 (722)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTCCCSE--EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCS-
T ss_pred --HHHHHHHHHHHHHHHHHHhCCCCCC--CeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhccc-
Confidence 4589999999999999999999886 68899999999999999999999999999999999999999999965531
Q ss_pred ccCCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEecCCCCCccce
Q 001289 334 DIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPI 413 (1107)
Q Consensus 334 e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~P~~~~~iPI 413 (1107)
++|.|+.
T Consensus 142 ---------------------------------------------------------------------tcP~c~~---- 148 (722)
T 1rqg_A 142 ---------------------------------------------------------------------TCPYCGA---- 148 (722)
T ss_dssp ---------------------------------------------------------------------BCSSSCC----
T ss_pred ---------------------------------------------------------------------ccCccCC----
Confidence 1343332
Q ss_pred EecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCeece
Q 001289 414 ICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGA 493 (1107)
Q Consensus 414 i~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~ 493 (1107)
. +..|.+|++||..+
T Consensus 149 ------------------------~----------------~~~Gd~c~~~G~~l------------------------- 163 (722)
T 1rqg_A 149 ------------------------E----------------DQKGDQCEVCGRPL------------------------- 163 (722)
T ss_dssp ------------------------S----------------CCCTTTCSSSCCCC-------------------------
T ss_pred ------------------------c----------------cCCcchhhhccccc-------------------------
Confidence 1 12566677787222
Q ss_pred eccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHh-ccCCCeeeeecCCCcc
Q 001289 494 KDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWL-EAIRDWCVSRQLWWGH 572 (1107)
Q Consensus 494 ~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl-~~l~DWcISRQ~~WG~ 572 (1107)
.+..+..|+|+|||++++++.++|||++++++++.+++++ ++.. .|++.++++.+|| ++++|||||||++||+
T Consensus 164 ~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~---~~~~---wp~~~~~~~~~wl~~gl~dw~ISR~~~WG~ 237 (722)
T 1rqg_A 164 TPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWI---EKQP---WKPNVKNMVLSWIEEGLEERAITRDLNWGI 237 (722)
T ss_dssp CTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHH---HSSC---CCHHHHHHHHHHHTTCCCCEECEECCSSSC
T ss_pred ChhhccCCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHH---HhCC---CCHHHHHHHHHHHHCCCcccceeccccCcc
Confidence 2345668999999999999999999999999999999999 5443 5999999999999 8999999999999999
Q ss_pred cceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCccccccc-CCC---CCh
Q 001289 573 QIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLG-WPD---DTD 648 (1107)
Q Consensus 573 pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lg-wp~---~~~ 648 (1107)
|||+|++. -+.+|+|+|||+.+.+++.++ |+. ..+
T Consensus 238 piP~~~~g-----------------------------------------~~~~~iyvW~da~i~y~~~~~~~~~~~g~~~ 276 (722)
T 1rqg_A 238 PVPLDEED-----------------------------------------MKGKVLYVWFEAPIGYISITIEHFKRIGKPN 276 (722)
T ss_dssp BCSCCCSS-----------------------------------------STTCEECHHHHGGGHHHHHHHHHHHHTTCTT
T ss_pred ccCccccC-----------------------------------------CCCCEEEEEeccccchhhhHHHHHhhcCCch
Confidence 99975311 023699999999988877664 543 224
Q ss_pred hhhhhCC--cC----cccccccccch----HHHHHHHHHH-----HhcC-CCCccEEEEcceeeCCCCccccccCCCccC
Q 001289 649 DLKAFYP--TS----VLETGHDILFF----WVARMVMLGI-----KLGG-EVPFTKVYLHPMIRDAHGRKMSKSLGNVID 712 (1107)
Q Consensus 649 d~~~~yP--~d----l~~tG~Dil~f----W~armi~~~~-----~l~g-~~PFk~V~~Hg~v~D~~G~KMSKSlGNvId 712 (1107)
+|+.||| .+ ++++|+||++| |++.+++.+. .+.| .+| ++|++||||++ +|+|||||+||||+
T Consensus 277 ~~~~~w~~pd~~~~~~h~~GkDii~fH~~~wpA~l~~~~~~l~~d~~rg~~~P-k~v~~hG~v~~-~G~KMSKS~GNvV~ 354 (722)
T 1rqg_A 277 EWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLP-YDIPANEYLTL-EGKKFSTSRNWAIW 354 (722)
T ss_dssp TTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTCCBCSSSCCBCBCCC-SBCCEECCEEE-TTEECBTTTTBSCB
T ss_pred HHHhccCCCCCCCeeEEEccccccccchhhhHHHHhccCCCcccccccCCCCC-CEEEEeeeEEe-CCeeeeeeCCCcCC
Confidence 6887887 32 89999999998 8885543331 0113 568 99999999997 99999999999999
Q ss_pred ccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHHHHH--HH
Q 001289 713 PLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQ--WC 790 (1107)
Q Consensus 713 P~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r~--f~ 790 (1107)
|.++|+ +||+|+|||||++.++.++|++|+++.+....+ ++
T Consensus 355 p~d~i~-------------------------------------~ygaDalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~ 397 (722)
T 1rqg_A 355 VHEFLD-------------------------------------VFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELV 397 (722)
T ss_dssp HHHHTT-------------------------------------TSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTTT
T ss_pred HHHHHH-------------------------------------hcCchHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHH
Confidence 999999 899999999999988999999999999987654 88
Q ss_pred HHHHHHHHHHh----hhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHHH
Q 001289 791 NKLWNAVRFSM----SKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFI 866 (1107)
Q Consensus 791 nKl~N~~rf~l----~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yi 866 (1107)
|++||++.++. .++. +..|. ...+...|+|++++++.++..+.++|++|+|+.|++.|++|+ ++||+|+
T Consensus 398 ~~l~N~~~R~~~~~~k~~~-~~~~~----~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~~~~--~~~n~Yi 470 (722)
T 1rqg_A 398 NNLGNFVHRALTFVNRYFD-GVVPE----RGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLA--SFGNRYF 470 (722)
T ss_dssp TTHHHHHHHHHHHHHHHST-TBCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcC-CCCCC----cccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHHH
Confidence 88888765443 3332 22221 123567899999999999999999999999999999999997 7999999
Q ss_pred HhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCC
Q 001289 867 EAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 919 (1107)
Q Consensus 867 e~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~ 919 (1107)
+..+||....+.. .....+..+++.+++.+++||+|||||+||+||+.|+.
T Consensus 471 ~~~kpw~~~k~~~--~~~~~vl~~l~~~l~~l~~lL~P~~P~~aeei~~~L~~ 521 (722)
T 1rqg_A 471 DHKQPWKTAKEDK--VRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNL 521 (722)
T ss_dssp HTTCHHHHTTTCH--HHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HhcCchhhcCCCH--HHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHcCC
Confidence 9999997643221 13345666788899999999999999999999999985
No 10
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=2.5e-87 Score=815.40 Aligned_cols=489 Identities=17% Similarity=0.253 Sum_probs=415.2
Q ss_pred CCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHH
Q 001289 172 SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQ 251 (1107)
Q Consensus 172 ~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~ 251 (1107)
.++++|+|+.|||||||.|||||+++++++|+++||+||+||+|++++|||+||+||+..+++ .|.++
T Consensus 15 ~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~-----~g~~~------- 82 (560)
T 3h99_A 15 QVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ-----LGITP------- 82 (560)
T ss_dssp --CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHH-----HTSCH-------
T ss_pred CCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHH-----hCCCH-------
Confidence 466799999999999999999999999999999999999999999999999999999988875 46554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCccccccccc
Q 001289 252 FVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVD 331 (1107)
Q Consensus 252 f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe 331 (1107)
.++++++.+.|+++|++||+++| +++.|+++.|.+.|+++|.+|+++|+||++.+.|+|||.|+|+|+|.+|+
T Consensus 83 -----~~~~~~~~~~~~~~~~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~ 155 (560)
T 3h99_A 83 -----EQMIGEMSQEHQTDFAGFNISYD--NYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVK 155 (560)
T ss_dssp -----HHHHHHHHHHHHHHHHHTTCCCS--EEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEE
T ss_pred -----HHHHHHHHHHHHHHHHHcCCCCC--CceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcC
Confidence 36788899999999999999876 78899999999999999999999999999999999999999999997774
Q ss_pred ccccCCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEecCCCCCcc
Q 001289 332 YVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKI 411 (1107)
Q Consensus 332 ~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~P~~~~~i 411 (1107)
. .||.|++.
T Consensus 156 g----------------------------------------------------------------------~cp~c~~~- 164 (560)
T 3h99_A 156 G----------------------------------------------------------------------TCPKCKSP- 164 (560)
T ss_dssp E----------------------------------------------------------------------ECTTTCCS-
T ss_pred C----------------------------------------------------------------------CCCCCCCc-
Confidence 2 14544321
Q ss_pred ceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCee
Q 001289 412 PIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYR 491 (1107)
Q Consensus 412 PIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~ 491 (1107)
++.|..|++||..+
T Consensus 165 -------------------------------------------~~~gd~ce~cg~~~----------------------- 178 (560)
T 3h99_A 165 -------------------------------------------DQYGDNCEVCGATY----------------------- 178 (560)
T ss_dssp -------------------------------------------SEETTBCTTTCCBC-----------------------
T ss_pred -------------------------------------------ccccchhhhccccC-----------------------
Confidence 23577788999333
Q ss_pred ceeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHhc-cCCCeeeeecC-C
Q 001289 492 GAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLE-AIRDWCVSRQL-W 569 (1107)
Q Consensus 492 ~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~-~l~DWcISRQ~-~ 569 (1107)
.+.....|+|+|||++++++.++|||++++++++.+++++ +++ ++|+..++.+.+||+ +++|||||||+ |
T Consensus 179 --~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~---~~~---~~~~~~~~~~~~~l~~~l~D~~IsR~~~~ 250 (560)
T 3h99_A 179 --SPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWT---RSG---ALQEQVANKMQEWFESGLQQWDISRDAPY 250 (560)
T ss_dssp --CGGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHH---HTS---CSCHHHHHHHHHHHHHCCCCEECEEESSC
T ss_pred --ChhhhcCCccccCCCCceEEecceEEEEHHHHHHHHHHHH---HhC---CCCHHHHHHHHHHHhcCCCCCCccccCCc
Confidence 2334556999999999999999999999999999999999 553 357778999999997 89999999998 9
Q ss_pred CcccceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccc-cCCCC--
Q 001289 570 WGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVL-GWPDD-- 646 (1107)
Q Consensus 570 WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~l-gwp~~-- 646 (1107)
||+|||.. +.+|+|||||+.+.|++.+ +|+++
T Consensus 251 WG~~iP~~---------------------------------------------~~~viyvW~da~~~y~s~~~~~~~~~~ 285 (560)
T 3h99_A 251 FGFEIPNA---------------------------------------------PGKYFYVWLDAPIGLMGSFKNLCDKRG 285 (560)
T ss_dssp SSCBCTTC---------------------------------------------TTEEECHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeeCCCC---------------------------------------------CCceEEeCcccchhHHHHHHHHhhccC
Confidence 99999930 2369999999999998887 57653
Q ss_pred -ChhhhhhCCcC-----cccccccccc----hHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCcccc
Q 001289 647 -TDDLKAFYPTS-----VLETGHDILF----FWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEV 716 (1107)
Q Consensus 647 -~~d~~~~yP~d-----l~~tG~Dil~----fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dv 716 (1107)
..+|+.|||.| ++++|+||++ ||+++|+++|+ ..| ++|++||||++ +|+|||||+||||+|.|+
T Consensus 286 ~~~~~~~~wp~~~~~~~~~~~G~D~~~fh~~~~~a~l~~~g~----~~p-~~v~~hg~v~~-~G~KMSKS~GNvv~p~d~ 359 (560)
T 3h99_A 286 DSVSFDEYWKKDSTAELYHFIGKDIVYFLSLFWPAMLEGSNF----RKP-SNLFVHGYVTV-NGAKMSKSRGTFIKASTW 359 (560)
T ss_dssp CSSHHHHHHBTTCCSEEEEEEEGGGHHHHHTHHHHHHHHTTB----CCC-SEEEEECCEEE-TTEECCTTTTCCCBHHHH
T ss_pred ChhhHHHhCcCCCCceeEEEeccccchhHHHHHHHHHHhCCC----CCC-cEEEEEeEEEe-CCeeccccCCCcCCHHHH
Confidence 36899999999 9999999999 78888887664 457 99999999997 999999999999999999
Q ss_pred ccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcc-ccccccHHHHHH--HHHHHHHH
Q 001289 717 INGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQS-DKINLDIQRVVG--YRQWCNKL 793 (1107)
Q Consensus 717 I~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~-~Dinf~~~~v~~--~r~f~nKl 793 (1107)
|+ +||+||+||||++.++.+ +|++|+++.+.. .++|+|++
T Consensus 360 i~-------------------------------------~~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~l 402 (560)
T 3h99_A 360 LN-------------------------------------HFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKV 402 (560)
T ss_dssp HH-------------------------------------HSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCCC
T ss_pred HH-------------------------------------HcCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 99 899999999999988766 899999999875 56799999
Q ss_pred HHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHHHHhhcccc
Q 001289 794 WNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYF 873 (1107)
Q Consensus 794 ~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l 873 (1107)
||++.+++..+...+... . .....|+||+++|+.+++.+.++|++|+|+.|++.+++|+ ++||+|++.+|||.
T Consensus 403 ~n~~~R~~~~~~~~~~~~--~---~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~l~--~~~n~Yi~~~kpw~ 475 (560)
T 3h99_A 403 VNLASRNAGFINKRFDGV--L---ASELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALA--DLANRYVDEQAPWV 475 (560)
T ss_dssp THHHHTTHHHHHHHSTTB--C---CSSCSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhcCCC--C---CCccccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhcCchh
Confidence 998765544332212111 1 1235799999999999999999999999999999999997 89999999999984
Q ss_pred cCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCC
Q 001289 874 AGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 919 (1107)
Q Consensus 874 ~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~ 919 (1107)
...+......+..+..+++.+|+.+++||+|||||+||+||++|+.
T Consensus 476 l~k~~~~~~~~~~~~~~~~~~l~~~~~lL~P~~P~~aeei~~~L~~ 521 (560)
T 3h99_A 476 VAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNT 521 (560)
T ss_dssp HTTSTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTS
T ss_pred hcCCcCcHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHcCC
Confidence 3332111124556677889999999999999999999999999974
No 11
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=9.5e-86 Score=796.17 Aligned_cols=469 Identities=21% Similarity=0.321 Sum_probs=401.5
Q ss_pred CCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHH
Q 001289 172 SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQ 251 (1107)
Q Consensus 172 ~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~ 251 (1107)
.+++.|+|++|||||||.||||||++++++|+++||+||+||+|+|++||||||+||+..+++ +|.++
T Consensus 9 ~~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~-----~g~~~------- 76 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAK-----EGIPA------- 76 (524)
T ss_dssp --CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHH-----HTSCH-------
T ss_pred CCCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHH-----cCCCH-------
Confidence 456799999999999999999999999999999999999999999999999999999887764 46654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCccccccccc
Q 001289 252 FVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVD 331 (1107)
Q Consensus 252 f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe 331 (1107)
.+|++++.+.+++++++||+++| +++.|+|+.|.+.|+++|.+|+++|+||++.+.|+|||.|+|++++.||+
T Consensus 77 -----~~~~~~~~~~~~~~~~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~ 149 (524)
T 2x1l_A 77 -----AELARRNSDVFQRLQEKLNISFD--RFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETT 149 (524)
T ss_dssp -----HHHHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEE
T ss_pred -----HHHHHHHHHHHHHHHHHcCCcCC--CCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhc
Confidence 46889999999999999999888 67789999999999999999999999999999999999999999987663
Q ss_pred ccccCCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEecCCCCCcc
Q 001289 332 YVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKI 411 (1107)
Q Consensus 332 ~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~P~~~~~i 411 (1107)
+
T Consensus 150 ~------------------------------------------------------------------------------- 150 (524)
T 2x1l_A 150 E------------------------------------------------------------------------------- 150 (524)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred ceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCee
Q 001289 412 PIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYR 491 (1107)
Q Consensus 412 PIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~ 491 (1107)
|+ ||
T Consensus 151 -------------g~-------------------------------------~G-------------------------- 154 (524)
T 2x1l_A 151 -------------QP-------------------------------------DG-------------------------- 154 (524)
T ss_dssp -------------CT-------------------------------------TS--------------------------
T ss_pred -------------CC-------------------------------------CC--------------------------
Confidence 00 02
Q ss_pred ceeccccccceec-cCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHh-ccCCCeeeeecC-
Q 001289 492 GAKDNEMRLGLCS-RSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWL-EAIRDWCVSRQL- 568 (1107)
Q Consensus 492 ~~~~~~~~~p~c~-Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl-~~l~DWcISRQ~- 568 (1107)
+.|+ |||.+++++.++|||++++++++++++.+ +.+...+.|+..++.+.+|+ ++++||||||||
T Consensus 155 ---------~~c~~~~g~~v~~~~~~qwF~~l~~~~~~l~~~~---~~~~~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~ 222 (524)
T 2x1l_A 155 ---------TRIATETGAPVTWTEEQTYFFRLSAYTDRLLALY---EEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTF 222 (524)
T ss_dssp ---------CEEETTTCCBEEEEEEEEEEECGGGSHHHHHHHH---HHCGGGEESHHHHHHHHHHHTTCCCCEECEESSC
T ss_pred ---------CccccccCCcceEEecCCeEeeHHHHHHHHHHHH---HhCCCeeCCHHHHHHHHHHHHcCCcccceECCCC
Confidence 2588 99999999999999999999999999998 54445688999999999999 589999999996
Q ss_pred CCcccceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCCC-
Q 001289 569 WWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDT- 647 (1107)
Q Consensus 569 ~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~~~- 647 (1107)
+||+||| |. +.+|+||||||+++|++.+|||.+.
T Consensus 223 ~WG~~iP-~~--------------------------------------------~~~~~yvWfds~~~~~~~~g~p~~~~ 257 (524)
T 2x1l_A 223 DWGVPVP-DH--------------------------------------------PDHVMYVWVDALTNYLTGVGFPDTES 257 (524)
T ss_dssp CSSCEET-TE--------------------------------------------EEEEECHHHHHHTHHHHTTTTTCTTS
T ss_pred CcCccCC-CC--------------------------------------------CCCEEEEecCCchHHHHHcCCCCCch
Confidence 6999999 21 1268999999999999999999864
Q ss_pred hhhhhhCCcCcccccccccch----HHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCccccccccCch
Q 001289 648 DDLKAFYPTSVLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLE 723 (1107)
Q Consensus 648 ~d~~~~yP~dl~~tG~Dil~f----W~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~ 723 (1107)
.+|++|||.|++++|+||++| |++.++++ |..||++|++||||++ +|+|||||+||||+|.|+|+
T Consensus 258 ~~~~~~~p~di~~~G~D~~~fh~~~~~a~l~~~-----g~~~~~~v~~hG~v~~-~G~KMSKS~GN~v~p~d~i~----- 326 (524)
T 2x1l_A 258 ESFRRYWPADLHMIGKDIIRFHTVYWPAFLMSA-----GLPLPKRIFAHGWLLN-RGEKMSKSIGNVVDPVNLVD----- 326 (524)
T ss_dssp HHHHHHCSCSEEEEEGGGHHHHHTHHHHHHHHH-----TCCCCSCEEEECCEEE-CSCSEETTTEESSCHHHHHH-----
T ss_pred HHHHhhCCCeEEEEeechhHhHHHHHHHHHHHC-----CCCCCcEEEECcEEEe-CCcccCCcCCCCCCHHHHHH-----
Confidence 478999999999999999998 66666554 4568899999999997 89999999999999999998
Q ss_pred hHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHHHHH--HHHHHHHHHHHHh
Q 001289 724 GLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQ--WCNKLWNAVRFSM 801 (1107)
Q Consensus 724 ~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r~--f~nKl~N~~rf~l 801 (1107)
+||+|++||||++.++.++|++|+.+.+.++.+ ++|+|||+.+++.
T Consensus 327 --------------------------------~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n~~~r~~ 374 (524)
T 2x1l_A 327 --------------------------------TFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSL 374 (524)
T ss_dssp --------------------------------HHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHHHHHHHH
T ss_pred --------------------------------HcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999988889999999999988764 8999999987654
Q ss_pred hhhC---CCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHHHHhhccc-ccCCC
Q 001289 802 SKLG---EGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPY-FAGDN 877 (1107)
Q Consensus 802 ~~l~---~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~-l~~~~ 877 (1107)
..+. ++..|. .......|+|++++++.+++.+.++|++|+|+.|++.|++|+ .+||+|++.+||| +..+.
T Consensus 375 ~~~~~~~~~~~~~----~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~--~~~n~y~~~~k~w~l~~~~ 448 (524)
T 2x1l_A 375 SMVAKNLGAAVPD----PGEFTDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVL--GAANRYFSAQEPWVLRKSD 448 (524)
T ss_dssp HHHHHHSTTBCCC----CCCCCHHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHTTCC
T ss_pred HHHHHhcCCCCCC----ccccchhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHhcCChhhhcCc
Confidence 4321 222221 123567899999999999999999999999999999999997 5899999999997 33321
Q ss_pred -cccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCC
Q 001289 878 -PAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQP 920 (1107)
Q Consensus 878 -~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~ 920 (1107)
+.......++..+++.+++.+++||+|||||+|||||+.|+..
T Consensus 449 ~~~~~~~~~~~l~~l~~~l~~~~~ll~P~~P~~aeei~~~L~~~ 492 (524)
T 2x1l_A 449 AAEDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAKLLDLLGQP 492 (524)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTCC
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC
Confidence 1100123345667788888899999999999999999999863
No 12
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=1.9e-85 Score=794.94 Aligned_cols=465 Identities=23% Similarity=0.347 Sum_probs=396.3
Q ss_pred CCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHH
Q 001289 173 SKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQF 252 (1107)
Q Consensus 173 ~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f 252 (1107)
++++|+|+.|+|||||.|||||++++++.|+++||+||+||+|++++|+|+||.+|+..+++ .|.++
T Consensus 23 ~~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~-----~g~~~-------- 89 (536)
T 4dlp_A 23 SREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARK-----EGITP-------- 89 (536)
T ss_dssp -CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHH-----HTSCH--------
T ss_pred CCCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHH-----cCCCH--------
Confidence 35689999999999999999999999999999999999999999999999999999877653 46654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCcccccccccc
Q 001289 253 VSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDY 332 (1107)
Q Consensus 253 ~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~ 332 (1107)
.++++++.+.++++|++||+++| +++.|+++.|.+.++++|.+|+++|+||++...++||+.|++++++.||+.
T Consensus 90 ----~~~~~~~~~~~~~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~ 163 (536)
T 4dlp_A 90 ----RDLADRNTSAFRRMAEVLNSSND--DYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEV 163 (536)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEE
T ss_pred ----HHHHHHHHHHHHHHHHHcCCCCC--cceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhc
Confidence 46789999999999999999988 677899999999999999999999999999999999999999999866531
Q ss_pred cccCCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEecCCCCCccc
Q 001289 333 VDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIP 412 (1107)
Q Consensus 333 ~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~P~~~~~iP 412 (1107)
.
T Consensus 164 ~------------------------------------------------------------------------------- 164 (536)
T 4dlp_A 164 R------------------------------------------------------------------------------- 164 (536)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred eEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCeec
Q 001289 413 IICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRG 492 (1107)
Q Consensus 413 Ii~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~ 492 (1107)
++ |
T Consensus 165 -------------------------------------------~~-------g--------------------------- 167 (536)
T 4dlp_A 165 -------------------------------------------AD-------G--------------------------- 167 (536)
T ss_dssp -------------------------------------------TT-------S---------------------------
T ss_pred -------------------------------------------CC-------C---------------------------
Confidence 01 1
Q ss_pred eeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHhc-cCCCeeeeec-CCC
Q 001289 493 AKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLE-AIRDWCVSRQ-LWW 570 (1107)
Q Consensus 493 ~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~-~l~DWcISRQ-~~W 570 (1107)
..|+|||++++++.++|||++++++++.+++++ +++...|.|+..++.+.+||+ +++||||||| .||
T Consensus 168 --------~~c~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~---~~~~~~i~P~~~~~~~~~~l~~~l~D~~ISR~~~~W 236 (536)
T 4dlp_A 168 --------VRYGPQGTPVEWVEEESYFFRLSAYQDKLLDLY---ENNPGFIMPAERRNEIVSFVKSGLKDLSISRTTFDW 236 (536)
T ss_dssp --------CEECTTSSBCEEEEEEEEEECGGGGHHHHHHHH---HHCTTSEESHHHHHHHHHHHHTCCCCEECEEC--CC
T ss_pred --------CcccCCCCcceEEeccceEEecHHHHHHHHHHH---HhCCCccCcHHHHHHHHHHHhcCCCccCCccCCCcC
Confidence 158899999999999999999999999999999 666667899999999999996 8999999998 689
Q ss_pred cccceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCCChhh
Q 001289 571 GHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDL 650 (1107)
Q Consensus 571 G~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~~~~d~ 650 (1107)
|||||. + +.+|+||||||+++|++++|||.++.+|
T Consensus 237 GipiP~------~---------------------------------------~~~v~yvWfda~~~y~s~~~~~~~~~~~ 271 (536)
T 4dlp_A 237 GIPVPG------D---------------------------------------EKHVMYVWVDALTNYITALGYPDTTDER 271 (536)
T ss_dssp SCBCTT------C---------------------------------------TTSEECHHHHHHHHHHHTTTTTCTTSGG
T ss_pred CeeCCC------C---------------------------------------CCCceEEeeCCcHHHHHhcCCCCCchHH
Confidence 999992 0 2379999999999999999999988999
Q ss_pred hhhCCcCcccccccccch----HHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCccccccccCchhHH
Q 001289 651 KAFYPTSVLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLH 726 (1107)
Q Consensus 651 ~~~yP~dl~~tG~Dil~f----W~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~ 726 (1107)
+.|||.|++++|+||++| |+++|+++ |..||++|++||||++ +|+|||||+||||+|.|+|+
T Consensus 272 ~~~~p~dv~~~G~D~~~fh~~~~~a~l~a~-----g~~~~~~v~~hg~v~~-~G~KMSKS~GNvi~p~d~i~-------- 337 (536)
T 4dlp_A 272 WAYWPANAHIIGKDISRFHAVYWPAFLMSA-----QLPLPKRVFAHGFLFN-RGEKMSKSVGNVIDPFELVE-------- 337 (536)
T ss_dssp GGGCSCSEEEEEGGGHHHHHTHHHHHHHHT-----TCCCCSCEEEECCEEC-------------CCHHHHHH--------
T ss_pred HhhCCcceEEeechHHHHHHHHHHHHHHHC-----CCCCCcEEEeeeeEee-CCceecccCCCCCCHHHHHH--------
Confidence 999999999999999998 88888765 4468899999999985 99999999999999999999
Q ss_pred HHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHHHH--HHHHHHHHHHHHHhhhh
Q 001289 727 KRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYR--QWCNKLWNAVRFSMSKL 804 (1107)
Q Consensus 727 ~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r--~f~nKl~N~~rf~l~~l 804 (1107)
+||+|++||||++..+.++|++|+++.+.+.. +|+|++||++++++..+
T Consensus 338 -----------------------------~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~ 388 (536)
T 4dlp_A 338 -----------------------------RYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMI 388 (536)
T ss_dssp -----------------------------HHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_pred -----------------------------HcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999998888999999999998754 59999999887655433
Q ss_pred C---CCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHHHHhhccccc-CCCccc
Q 001289 805 G---EGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFA-GDNPAF 880 (1107)
Q Consensus 805 ~---~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~-~~~~~~ 880 (1107)
. +++.|.. ...+..|+||+++|+++++.+.++|++|+|+.|++.+++|+ ++||+|++.+|||.. .++..
T Consensus 389 ~~~~~~~~p~~----~~~~~~d~~ll~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~--~~~n~Y~~~~k~w~l~~~~~~- 461 (536)
T 4dlp_A 389 AKNCEGKVPQP----GAFSEADKAILDQADAALETARKAMDDQALHLALGAIFAVV--AEANRYFAGQEPWALRKTDPA- 461 (536)
T ss_dssp HHHSTTBCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHHHHCHH-
T ss_pred HhhcCCCCCCc----ccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhCCchhhcCCCHH-
Confidence 2 2344421 24678999999999999999999999999999999999996 899999999999733 22322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCC
Q 001289 881 ASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQP 920 (1107)
Q Consensus 881 ~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~ 920 (1107)
.+.++..+++.+++.+++||+|||||+||+||+.|+..
T Consensus 462 --~~~~~~~~l~~~l~~~~~lL~P~~P~~aeei~~~L~~~ 499 (536)
T 4dlp_A 462 --RMGTVLYVTAEVLRRVGIMVQPFIPQSAEKLLDILAVP 499 (536)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHTTTCC
T ss_pred --HHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHcCCC
Confidence 44567888889999999999999999999999999853
No 13
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=4.9e-85 Score=794.26 Aligned_cols=479 Identities=19% Similarity=0.234 Sum_probs=410.1
Q ss_pred cCCcccCCCCCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCC
Q 001289 163 SGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKL 242 (1107)
Q Consensus 163 ~~~f~~~~~~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~ 242 (1107)
...|.+.....+++|+|+.|+|||||.|||||++++++.|+++||+||+||+|++++|+|+||.+|+..+++ .|.
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~-----~g~ 88 (564)
T 3kfl_A 14 AQTQGPGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAK-----QGV 88 (564)
T ss_dssp ----------CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHH-----TTC
T ss_pred hhhcCCccccCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHH-----cCC
Confidence 345666655566789999999999999999999999999999999999999999999999999999877753 576
Q ss_pred CccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCC
Q 001289 243 TRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLR 322 (1107)
Q Consensus 243 ~~~d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~ 322 (1107)
++ ++|++++.+.++++|++||+++| +++.|+|+.|.+.|+++|.+|+++|+||++...++||+.|+
T Consensus 89 ~p------------~~~~~~~~~~~~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~ 154 (564)
T 3kfl_A 89 SP------------MDFTTSVSSEFKQCFQEMNYDMN--YFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDE 154 (564)
T ss_dssp CH------------HHHHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTT
T ss_pred CH------------HHHHHHHHHHHHHHHHHcCCCCC--ccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcC
Confidence 64 46899999999999999999999 56789999999999999999999999999999999999999
Q ss_pred cccccccccccccCCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEE
Q 001289 323 TAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFA 402 (1107)
Q Consensus 323 TaLsd~EVe~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~ 402 (1107)
+++++.||...
T Consensus 155 ~~l~~~~~~~~--------------------------------------------------------------------- 165 (564)
T 3kfl_A 155 SFLTAQNVADG--------------------------------------------------------------------- 165 (564)
T ss_dssp EEECGGGEEEE---------------------------------------------------------------------
T ss_pred CCCCHHHhccC---------------------------------------------------------------------
Confidence 99999776420
Q ss_pred ecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHH
Q 001289 403 IHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNE 482 (1107)
Q Consensus 403 ~~P~~~~~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~ 482 (1107)
+| .+|.. |+
T Consensus 166 ------------~~---------------------------------------~~g~~---c~----------------- 174 (564)
T 3kfl_A 166 ------------VD---------------------------------------RDGKP---CK----------------- 174 (564)
T ss_dssp ------------EC---------------------------------------TTSCE---EE-----------------
T ss_pred ------------cC---------------------------------------CCCCE---ec-----------------
Confidence 00 01111 11
Q ss_pred HHHHcCCeeceeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHhc-cCCC
Q 001289 483 ALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLE-AIRD 561 (1107)
Q Consensus 483 ~L~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~-~l~D 561 (1107)
.|.+||++++++.++|||++++++++.+++++ +++...|.|+..++++.+||+ +++|
T Consensus 175 -------------------~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~---~~~~~~i~P~~~~~~~~~wl~~gl~D 232 (564)
T 3kfl_A 175 -------------------VSLESGHVVTWVEEENYMFRLSAFRERLLKYF---HDHPNCIVPEFRRREVIKTVEKGLFD 232 (564)
T ss_dssp -------------------EETTTSCBCEEEEEEEEEECGGGGHHHHHHHH---HHCTTSEESHHHHHHHHHHHHHCCCC
T ss_pred -------------------cccCCCCccEEEecceeEEEHHHHHHHHHHHH---HhCCCccCCHHHHHHHHHHHhCCCCC
Confidence 11257999999999999999999999999999 655567899999999999997 8999
Q ss_pred eeeee----cCCCcccceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcc
Q 001289 562 WCVSR----QLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFP 637 (1107)
Q Consensus 562 WcISR----Q~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p 637 (1107)
||||| |++||+|||. + +.+|+||||||+++|
T Consensus 233 ~~ISR~~~~~~~WGipiP~------~---------------------------------------~~~v~yVWfDa~~~y 267 (564)
T 3kfl_A 233 LSISRKRESVMNWSIPVPG------D---------------------------------------ERHCIYVWLDALFNY 267 (564)
T ss_dssp EECEEEGGGGTTCSCEETT------E---------------------------------------EEEEECHHHHHHTHH
T ss_pred ccccCcCCCCCCCCeecCC------C---------------------------------------CCCEEEEeccCcHHH
Confidence 99999 8999999992 1 237999999999999
Q ss_pred cccccC-CCCChh------h--hhhCCcCcccccccccch----HHHHHHHHHHHhcCCCCccEEEEcceeeCCCCcccc
Q 001289 638 LSVLGW-PDDTDD------L--KAFYPTSVLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMS 704 (1107)
Q Consensus 638 ~s~lgw-p~~~~d------~--~~~yP~dl~~tG~Dil~f----W~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMS 704 (1107)
++.++| |+++.+ | +.|||.|++++|+||++| |+++|+++| ..||++|++|||| +.+|+|||
T Consensus 268 ~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~~GkDii~FH~~~wpa~L~a~g-----~~~~~~v~~hg~v-~~~G~KMS 341 (564)
T 3kfl_A 268 YTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILKFHAIYWPAFLMSAE-----LPLPERLVSHGWW-TKDHKKIS 341 (564)
T ss_dssp HHHHHEEECTTSCEEECSSSTTTTCCSCSEEEEEGGGHHHHHTHHHHHHHHTT-----CCCCSCEEEECCE-EETTEECC
T ss_pred HHHhCccccccccccchhcchhhhcCccceEEEeecccchHHHHHHHHHHhCC-----CCCCcEEEEcccE-eeCCcccc
Confidence 999998 887655 8 899999999999999998 889887754 4688999999999 69999999
Q ss_pred ccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHH
Q 001289 705 KSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVV 784 (1107)
Q Consensus 705 KSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~ 784 (1107)
||+||||+|.++|+ +||+|+|||||++..+.++|++|+++.+.
T Consensus 342 KS~GNvV~p~d~i~-------------------------------------~~G~DalR~~ll~~~~~~~D~~fs~~~~~ 384 (564)
T 3kfl_A 342 KSLGNAFDPVEKAK-------------------------------------EFGIDALKYFLMRESNFQDDGDYSDKNMV 384 (564)
T ss_dssp TTTTCCCCHHHHHH-------------------------------------HHCHHHHHHHHHHHCCSSCCEECCHHHHH
T ss_pred ccCCCCCCHHHHHH-------------------------------------HcCcHHHHHHHHHcCCcccCCCCCHHHHH
Confidence 99999999999999 89999999999998888999999999998
Q ss_pred HHH--HHHHHHHHHHHHHhhhhC--CCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 001289 785 GYR--QWCNKLWNAVRFSMSKLG--EGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQ 860 (1107)
Q Consensus 785 ~~r--~f~nKl~N~~rf~l~~l~--~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~ 860 (1107)
+.. +++|+|||++++++..+. +++.|. ....+..|+|++++++.+++.+.++|++|+|+.|++.|++|+ .
T Consensus 385 ~~~n~~l~~~l~N~~~R~~~~~~~~~g~~p~----~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~i~~l~--~ 458 (564)
T 3kfl_A 385 ARLNGELADTLGNLVSRCVAPKINVNGMWPE----PAEYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVL--R 458 (564)
T ss_dssp HHHHHTTTTTHHHHHHHHHCTTTSTTSBCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH--H
Confidence 754 499999999998876543 123332 124578999999999999999999999999999999999997 5
Q ss_pred HhHHHHHhhccc-ccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCC
Q 001289 861 FCDVFIEAIKPY-FAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 919 (1107)
Q Consensus 861 l~d~Yie~~K~~-l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~ 919 (1107)
+||+|++.++|| +..++.. ...++..+++.+++.+++||+|||||+||+||+.|+.
T Consensus 459 ~~n~Y~~~~kpW~l~~~~~~---~~~~~~~~l~~~l~~l~~lL~P~~P~~ae~i~~~Lg~ 515 (564)
T 3kfl_A 459 SLNAYVTENAPWKLVKMDTA---RLGTVLYVTMEGLRICTMFLQPVMPQKAKEIMDALGV 515 (564)
T ss_dssp HHHHHHHHHCHHHHTTTCHH---HHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCChhhhcCCHH---HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcCC
Confidence 899999999996 4443333 4556788999999999999999999999999999985
No 14
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=3e-84 Score=779.01 Aligned_cols=458 Identities=23% Similarity=0.319 Sum_probs=393.3
Q ss_pred CCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHH
Q 001289 174 KPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFV 253 (1107)
Q Consensus 174 k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~ 253 (1107)
+++|+|+.|||||||.||||||++++++|+++||+||+||+|++++|||+||++++..+++ +|.++
T Consensus 2 ~~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~-----~g~~~--------- 67 (500)
T 2d5b_A 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQA-----AGEDP--------- 67 (500)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHH-----HTSCH---------
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHH-----cCCCH---------
Confidence 4689999999999999999999999999999999999999999999999999999877754 36654
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCccccccccccc
Q 001289 254 SEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYV 333 (1107)
Q Consensus 254 ~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~ 333 (1107)
.+|++++.+.|+++|++||+++| .++.|+|+.|.+.++++|.+|+++|+||++.+.++|||.|+|++++.++
T Consensus 68 ---~~~~~~~~~~~~~~~~~lgi~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l--- 139 (500)
T 2d5b_A 68 ---KAFVDRVSGRFKRAWDLLGIAYD--DFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKEL--- 139 (500)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTS---
T ss_pred ---HHHHHHHHHHHHHHHHHhCCcCC--CCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhc---
Confidence 36889999999999999999888 5788999999999999999999999999999999999999998886322
Q ss_pred ccCCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEecCCCCCccce
Q 001289 334 DIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPI 413 (1107)
Q Consensus 334 e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~P~~~~~iPI 413 (1107)
T Consensus 140 -------------------------------------------------------------------------------- 139 (500)
T 2d5b_A 140 -------------------------------------------------------------------------------- 139 (500)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCeece
Q 001289 414 ICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGA 493 (1107)
Q Consensus 414 i~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~ 493 (1107)
|+
T Consensus 140 ------~~------------------------------------------------------------------------ 141 (500)
T 2d5b_A 140 ------VE------------------------------------------------------------------------ 141 (500)
T ss_dssp ------BT------------------------------------------------------------------------
T ss_pred ------cC------------------------------------------------------------------------
Confidence 00
Q ss_pred eccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHhc-cCCCeeeee--cC-C
Q 001289 494 KDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLE-AIRDWCVSR--QL-W 569 (1107)
Q Consensus 494 ~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~-~l~DWcISR--Q~-~ 569 (1107)
+.|+|||.+++++.++|||++++++++.+++.+ +++...+.|+..++.+.+|++ +++|||||| |+ +
T Consensus 142 -------g~c~~~~~~v~~~~~~~wf~~l~~~~~~l~~~~---~~~~~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~ 211 (500)
T 2d5b_A 142 -------GLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYI---QENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVP 211 (500)
T ss_dssp -------TBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHH---HTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCC
T ss_pred -------CcCCCCCCeeeEEecCceEEEcHHHHHHHHHHH---HhCCCeeCCHHHHHHHHHHHhcCCCCeeccccccccc
Confidence 248999999999999999999999999999999 655556789999999999994 789999999 65 7
Q ss_pred CcccceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCCChh
Q 001289 570 WGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDD 649 (1107)
Q Consensus 570 WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~~~~d 649 (1107)
||+|||. + +++|+||||||++.|++.+|||.+..
T Consensus 212 WG~piP~-----~----------------------------------------~~~v~~vWfds~~~y~~~~g~~~~~~- 245 (500)
T 2d5b_A 212 WGIPLPW-----D----------------------------------------ENHVTFVWFDALLNYVSALDYPEGEA- 245 (500)
T ss_dssp SSCEETT-----E----------------------------------------EEEEECHHHHHHTHHHHTTTTTTCHH-
T ss_pred CccccCC-----C----------------------------------------CCCeeEEccccchhhHHHcCCCCCch-
Confidence 9999993 0 12699999999999999999997644
Q ss_pred hhhhCCcCcccccccccc----hHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCccccccccCchhH
Q 001289 650 LKAFYPTSVLETGHDILF----FWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGL 725 (1107)
Q Consensus 650 ~~~~yP~dl~~tG~Dil~----fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l 725 (1107)
++++||.|++++|+||++ ||++++.++ |..||++|++||||++.+|+|||||+||||+|.|+|+
T Consensus 246 ~~~~~p~di~~~G~D~~~fh~~~~~a~~~~~-----g~~~~~~v~~~G~v~~~~G~KMSKS~GN~i~p~d~i~------- 313 (500)
T 2d5b_A 246 YRTFWPHAWHLIGKDILKPHAVFWPTMLKAA-----GIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLE------- 313 (500)
T ss_dssp HHHHGGGEEEEEEGGGHHHHHTHHHHHHHHH-----TCCCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHH-------
T ss_pred HHHcCCCeEEEEeechhhhHHHHHHHHHHHc-----CCCCCcEEEECceEEeCCCCcccccCCCCCCHHHHHH-------
Confidence 888999999999999999 677877654 4568999999999998899999999999999999998
Q ss_pred HHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHHHH--HHHHHHHHHHHHHhhh
Q 001289 726 HKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYR--QWCNKLWNAVRFSMSK 803 (1107)
Q Consensus 726 ~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r--~f~nKl~N~~rf~l~~ 803 (1107)
+||+|+|||||++.++.++|++|+.+.+.+.. +++|++||+..++...
T Consensus 314 ------------------------------~~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~r~~~~ 363 (500)
T 2d5b_A 314 ------------------------------KYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAM 363 (500)
T ss_dssp ------------------------------HHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_pred ------------------------------hcCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999987888999999999998754 5899999987654433
Q ss_pred hCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHHHHhhcccccCCCcccHHH
Q 001289 804 LGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASE 883 (1107)
Q Consensus 804 l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~~~~~~~~~ 883 (1107)
+...+.. ... . ..++|++++++.+++.+.++|++|+|+.|++.+++|+ .+||+|++.+|||....+.. ..
T Consensus 364 ~~~~~~~--~~~--~--~~~~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~--~~~n~y~~~~k~w~~~~~~~--~~ 433 (500)
T 2d5b_A 364 LFRFAEG--RIP--E--PVAGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYV--KALNRYINEKKPWELFKKEP--EE 433 (500)
T ss_dssp HHHHSTT--BCC--C--CCCCGGGGGGGGHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHHHHCH--HH
T ss_pred HHHhcCC--CCC--c--hhHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhcCchhhccCcH--HH
Confidence 2111110 011 0 1148999999999999999999999999999999997 68999999999984322111 13
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCC
Q 001289 884 RSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 919 (1107)
Q Consensus 884 ~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~ 919 (1107)
.+.+..+++.+++.+++||+|||||+|||||+.|+.
T Consensus 434 ~~~~~~~l~~~l~~~~~ll~P~~P~~aeei~~~l~~ 469 (500)
T 2d5b_A 434 ARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGL 469 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHcCC
Confidence 345677888888899999999999999999999986
No 15
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=6.6e-82 Score=757.96 Aligned_cols=455 Identities=22% Similarity=0.295 Sum_probs=361.0
Q ss_pred CCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHH
Q 001289 174 KPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFV 253 (1107)
Q Consensus 174 k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~ 253 (1107)
+++|+|+.|||||||.||||||++++++|+++||+||+||+|++++||||||+||+..+++ +|.++
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~-----~g~~~--------- 69 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEE-----LGISP--------- 69 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHH-----SSSCH---------
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHH-----cCCCH---------
Confidence 5789999999999999999999999999999999999999999999999999999877753 46654
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCccccccccccc
Q 001289 254 SEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYV 333 (1107)
Q Consensus 254 ~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~TaLsd~EVe~~ 333 (1107)
.++++++.+.|+++|++||+++| .++.|+|+.|.+.++++|.+|+++|+||++.+.++|||.|+|++++.|+.
T Consensus 70 ---~~~~~~~~~~~~~~~~~lgi~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~-- 142 (497)
T 2csx_A 70 ---KELVDRNAERFKKLWEFLKIEYT--KFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELA-- 142 (497)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC--------------------
T ss_pred ---HHHHHHHHHHHHHHHHHhCCcCC--CCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhc--
Confidence 36788999999999999999777 57889999999999999999999999999999999999999988874321
Q ss_pred ccCCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEecCCCCCccce
Q 001289 334 DIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPI 413 (1107)
Q Consensus 334 e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~P~~~~~iPI 413 (1107)
T Consensus 143 -------------------------------------------------------------------------------- 142 (497)
T 2csx_A 143 -------------------------------------------------------------------------------- 142 (497)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCeece
Q 001289 414 ICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGA 493 (1107)
Q Consensus 414 i~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~ 493 (1107)
+
T Consensus 143 -------~------------------------------------------------------------------------ 143 (497)
T 2csx_A 143 -------E------------------------------------------------------------------------ 143 (497)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------c------------------------------------------------------------------------
Confidence 0
Q ss_pred eccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHhc-cCCCeeeee--cC-C
Q 001289 494 KDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLE-AIRDWCVSR--QL-W 569 (1107)
Q Consensus 494 ~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~-~l~DWcISR--Q~-~ 569 (1107)
.+.|+|||.+++++.++|||++++++++++++.+ +++...+.|+..++.+.+|++ +++|||||| |+ +
T Consensus 144 ------~~~c~~~~~~~~~~~~~~wf~~l~~~~~~l~~~~---~~~~~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~ 214 (497)
T 2csx_A 144 ------DHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELY---EKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVK 214 (497)
T ss_dssp --------------------CCEEEEECTTSSHHHHHHHH---HHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTTCC
T ss_pred ------CCCCCCCCCCCeEEecCceEEEcHHHHHHHHHHH---HhCCCeeCcHHHHHHHHHHHhcCCccccccccCCCCC
Confidence 0358999999999999999999999999999998 655556789999999999995 799999999 55 7
Q ss_pred CcccceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCCChh
Q 001289 570 WGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDD 649 (1107)
Q Consensus 570 WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~~~~d 649 (1107)
||+|||.. ..+++||||||++.|.+.+ +++ .+
T Consensus 215 WG~~iP~~---------------------------------------------~~~~i~vW~ds~~~~~s~~--~~~-~~ 246 (497)
T 2csx_A 215 WGIPVPFD---------------------------------------------PEHTIYVWFDALFNYISAL--EDK-VE 246 (497)
T ss_dssp SSEEETTE---------------------------------------------EEEEECSHHHHHTHHHHTT--TTT-HH
T ss_pred CceecCCC---------------------------------------------CCceEEEecccchhhcccC--CCc-ch
Confidence 99999931 1268999999999988877 322 11
Q ss_pred hhhhCCcCcccccccccc----hHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCccccccccCchhH
Q 001289 650 LKAFYPTSVLETGHDILF----FWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGL 725 (1107)
Q Consensus 650 ~~~~yP~dl~~tG~Dil~----fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l 725 (1107)
.+||.|++++|+||++ ||++.+.++ |..||+++++||||++ +|+|||||+||||+|.|+|+
T Consensus 247 --~~~p~di~~~G~D~~~~H~~~~~a~l~~~-----g~~~~~~~~~~G~v~~-~G~KMSKS~GN~i~~~dli~------- 311 (497)
T 2csx_A 247 --IYWPADLHLVGKDILRFHTVYWPAFLMSL-----GYELPKKVFAHGWWTV-EGKKMSKTLGNVVDPYEVVQ------- 311 (497)
T ss_dssp --HHCSCSCEEEEGGGHHHHHTHHHHHHHHH-----TCCCCSCEEEECCEES-SSSBCCTTTTCCCCHHHHHH-------
T ss_pred --hhCCceEEEeecchhHhHHHHHHHHHHHc-----CCCCCcEEEECcEEEe-CCceeCCcCCCCCCHHHHHH-------
Confidence 5679999999999999 677766544 5678999999999997 99999999999999999998
Q ss_pred HHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHHHH--HHHHHHHHHHHHHhhh
Q 001289 726 HKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYR--QWCNKLWNAVRFSMSK 803 (1107)
Q Consensus 726 ~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r--~f~nKl~N~~rf~l~~ 803 (1107)
+||+|++||||++.++.++|++|+.+.+.+.. .++|+|||+..++...
T Consensus 312 ------------------------------~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~~ 361 (497)
T 2csx_A 312 ------------------------------EYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNM 361 (497)
T ss_dssp ------------------------------HHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHH
T ss_pred ------------------------------HCCcHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999988888999999999998754 3788999987665544
Q ss_pred hCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHHHHhhcccccCCCcccHHH
Q 001289 804 LGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASE 883 (1107)
Q Consensus 804 l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~~~~~~~~~ 883 (1107)
+...+.. .. . +..|+|++++++.+++.+.++|++|+|+.|++.+++|+ .+||+|++.+|||....+.. ...
T Consensus 362 ~~~~~~~--~~---~-~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~--~~~n~y~~~~k~~~~~~~~~-~~~ 432 (497)
T 2csx_A 362 AHKFLGG--EV---S-GARDEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFT--SYLNKYVDEKQPWALNKERK-KEE 432 (497)
T ss_dssp HHHHSTT--CB---C-CCCCTTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHHTTSC-HHH
T ss_pred HHHhcCC--CC---C-chhHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhcCchhhccccc-HHH
Confidence 3211110 01 1 35689999999999999999999999999999999997 58999999999984322111 013
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCC
Q 001289 884 RSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 919 (1107)
Q Consensus 884 ~~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~ 919 (1107)
.+.+..+++.+++.+++||+|||||+|||||+.|+.
T Consensus 433 ~~~~~~~~~~~l~~~~~ll~P~~P~~aeei~~~L~~ 468 (497)
T 2csx_A 433 LQKVLYALVDGLFVLTHLLYPITPNKMKEALQMLGE 468 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHcCC
Confidence 345677888889999999999999999999999985
No 16
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=1.2e-42 Score=407.53 Aligned_cols=347 Identities=20% Similarity=0.249 Sum_probs=258.1
Q ss_pred cEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHH
Q 001289 176 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSE 255 (1107)
Q Consensus 176 ~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~ 255 (1107)
+..+....|+|+|.+|||||+++++.|+++||+||+||+|.|++|+|++|.+|+..++ +.|.+
T Consensus 25 ~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~-----~~g~~------------ 87 (462)
T 3tqo_A 25 KVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAG-----ENKES------------ 87 (462)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHH-----HTTSC------------
T ss_pred eEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHH-----HcCCC------------
Confidence 4555556789999999999999999999999999999999999999999999877664 34654
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEe-eeeeeecCCCCcccccccccccc
Q 001289 256 VWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRD-LRLVNWDCVLRTAISDIEVDYVD 334 (1107)
Q Consensus 256 ~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~-~~~V~W~p~~~TaLsd~EVe~~e 334 (1107)
+++|+++|.+.+.+++++||++.||..+..| .|...++++|.+|+++|++|++ ...|+||+.+-. .|.
T Consensus 88 ~~e~a~~~~~~f~~d~~~LgI~~d~~~praT---e~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~~-------~yg- 156 (462)
T 3tqo_A 88 PAALAERFIQILHEDEKALRVLSPDQEPRAT---QYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFK-------DYG- 156 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCSBCCBGG---GCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTCT-------TTT-
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCccccChh---hHHHHHHHHHHHHHHCCCEEEecCCcEEecccccc-------ccc-
Confidence 6789999999999999999999998776666 8999999999999999999999 789999997431 111
Q ss_pred cCCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEecCCCCCccceE
Q 001289 335 IPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPII 414 (1107)
Q Consensus 335 ~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~P~~~~~iPIi 414 (1107)
.|.|+..
T Consensus 157 -------------------------------------------------------------~Ls~~~~------------ 163 (462)
T 3tqo_A 157 -------------------------------------------------------------KLSHRHL------------ 163 (462)
T ss_dssp -------------------------------------------------------------TTTTCSC------------
T ss_pred -------------------------------------------------------------cccCCCh------------
Confidence 1111100
Q ss_pred ecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCeecee
Q 001289 415 CDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAK 494 (1107)
Q Consensus 415 ~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~ 494 (1107)
-++..|+.+--..--.+|.||.+++..
T Consensus 164 -----~~~~~g~r~~~~~~K~~p~DF~LWK~~------------------------------------------------ 190 (462)
T 3tqo_A 164 -----DELQAGARVEVSDSKRDPLDFVLWKKA------------------------------------------------ 190 (462)
T ss_dssp -----C------------CCSSTTCEEEEEEC------------------------------------------------
T ss_pred -----HHhhccCccccccccCCccccceeeec------------------------------------------------
Confidence 001111110000001233343322110
Q ss_pred ccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeecCCCcccc
Q 001289 495 DNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQI 574 (1107)
Q Consensus 495 ~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pI 574 (1107)
+.++. -|- --||---
T Consensus 191 ------------------------------------------k~~ep-------------------~W~----spwG~Gr 205 (462)
T 3tqo_A 191 ------------------------------------------KPGEP-------------------KWD----SPWGEGR 205 (462)
T ss_dssp ------------------------------------------CTTSC-------------------CBC----CTTCSEE
T ss_pred ------------------------------------------CCCCC-------------------ccc----CCCCCCC
Confidence 00111 121 2488888
Q ss_pred eeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCCChhhhhhC
Q 001289 575 PAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFY 654 (1107)
Q Consensus 575 P~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~~~~d~~~~y 654 (1107)
|.||++ | .| +-...+| -
T Consensus 206 PGWHiE-c---------------------sa------------------------------m~~~~lG-----------~ 222 (462)
T 3tqo_A 206 PGWHIE-C---------------------SA------------------------------MSSSILG-----------Q 222 (462)
T ss_dssp ECHHHH-H---------------------HH------------------------------HHHHHHC-----------S
T ss_pred CCCcee-h---------------------HH------------------------------HHHHhcC-----------C
Confidence 888764 1 00 0011122 2
Q ss_pred CcCcccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCccccccccCchhHHHHhhcCCC
Q 001289 655 PTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNL 734 (1107)
Q Consensus 655 P~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl 734 (1107)
+.|++.+|.|++|+|+.++++.+.+++|+ ||.++++|+.+++.+|+|||||+||+|+|.|+++
T Consensus 223 ~~dih~gG~Dl~FpHheneiaqs~a~~g~-p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~---------------- 285 (462)
T 3tqo_A 223 PFDIHGGGLDLKFPHHENEIAQSEAGEEK-PFVKLWMHAGLLEINKEKMSKSLGNIISIREALK---------------- 285 (462)
T ss_dssp SEEEEEEEGGGTTTHHHHHHHHHHHHHSS-CCEEEEEEECCEEETTEECCTTTTCCCBHHHHHH----------------
T ss_pred CeEEEccccccccHHHHhHHHHHHHHcCC-CcceEEEEccEEecCCcCccccCCCcccHHHHHh----------------
Confidence 56899999999999999999999999998 9999999988888999999999999999999998
Q ss_pred ChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCC
Q 001289 735 DPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKL 814 (1107)
Q Consensus 735 ~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r~f~nKl~N~~rf~l~~l~~~~~p~~~~ 814 (1107)
+||+|++||||++. ....+++|+.+.+.+.++++++|||+++++.. ..+
T Consensus 286 ---------------------~~g~dalR~~lls~-~yr~~l~fs~~~l~~a~~~l~rl~~~~~~~~~-----~~~---- 334 (462)
T 3tqo_A 286 ---------------------ESDVEVLRYFLLSG-HYRNPLSYSKENLENGRLALERFYLALRGLPV-----VNH---- 334 (462)
T ss_dssp ---------------------HSCHHHHHHHHHHS-CTTSCEEECHHHHHHHHHHHHHHHHHHTTCCC------------
T ss_pred ---------------------hcChHHhhhhhccC-CCCCCcCcCHHHHHHHHHHHHHHHHHHHHhhh-----ccc----
Confidence 89999999999974 67889999999999999999999999876421 000
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHhHhHHHHH
Q 001289 815 HPHNLPFSCKWILSVLNKAISRTASSLN-SYEFSDAASTVYSWWQYQFCDVFIE 867 (1107)
Q Consensus 815 ~~~~~~~~D~wil~~L~~~~~~v~~a~e-~~~f~~a~~~i~~f~~~~l~d~Yie 867 (1107)
+ .+..+...+.++|+ .++...|+..|++++ ...|.++.
T Consensus 335 --------~-----~~~~~~~~~~~a~~dD~nt~~a~~~l~~~~--~~~n~~~~ 373 (462)
T 3tqo_A 335 --------E-----KTSSYTDRFYEAMDDDFNTPIAFALLFEMV--REINRFRD 373 (462)
T ss_dssp ----------------CHHHHHHHHHHTBTCCHHHHHHHHHHHH--HHHHHHHH
T ss_pred --------h-----hHHHHHHHHHHHHHhccChHHHHHHHHHHH--HHHhhhhc
Confidence 0 13346677888997 699999999999986 44565543
No 17
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=100.00 E-value=4.1e-41 Score=396.11 Aligned_cols=352 Identities=16% Similarity=0.186 Sum_probs=225.5
Q ss_pred CcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccC---------C-CccChhHHHHHHHHHHHHhCCCc
Q 001289 175 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPG---------M-DHAGIATQVVVEKKLMRERKLTR 244 (1107)
Q Consensus 175 ~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G---------~-D~~Gi~~q~~vEk~l~~~~g~~~ 244 (1107)
-++|++ +|+|+|.+|||||+++++.|+++||+||+||+|.|++| + |+||.+|+..+++ +|++
T Consensus 43 v~~Yvc--gPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~-----~g~~- 114 (501)
T 3sp1_A 43 VKVYAC--GPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTARE-----KGLT- 114 (501)
T ss_dssp EEEEEC--CCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC------------------------CC-
T ss_pred ceEEeC--CCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHH-----cCCC-
Confidence 345555 56677999999999999999999999999999999954 4 7778888666543 4654
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEEeeeeeeecCCCCcc
Q 001289 245 HDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTA 324 (1107)
Q Consensus 245 ~d~~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~V~W~p~~~Ta 324 (1107)
+++|+++|.+.+.++|++||++.||. .+.++.|...++++|.+|+++|+||+++..|+||+.+-
T Consensus 115 -----------~~e~a~~~~~~f~~d~~~Lgi~~d~~---~~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~f-- 178 (501)
T 3sp1_A 115 -----------VYEISEFFTEAFFNDCRKLNIVYPDK---VLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCF-- 178 (501)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHTTCCCCSE---EEEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGGC--
T ss_pred -----------HHHHHHHHHHHHHHHHHHcCCCCCCc---ccCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCcc--
Confidence 46899999999999999999999974 35688999999999999999999999999999999741
Q ss_pred cccccccccccCCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEec
Q 001289 325 ISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIH 404 (1107)
Q Consensus 325 Lsd~EVe~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~ 404 (1107)
-.| ..|.|..+.
T Consensus 179 -----~~y--------------------------------------------------------------G~ls~~~~~- 190 (501)
T 3sp1_A 179 -----KSY--------------------------------------------------------------GEMAGIDLI- 190 (501)
T ss_dssp -----TTT--------------------------------------------------------------TTTTC-----
T ss_pred -----CCc--------------------------------------------------------------cccCCCChh-
Confidence 011 111111000
Q ss_pred CCCCCccceEecCccccCCCCCCceecCC-CCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHH
Q 001289 405 PFNGRKIPIICDAILVDPKFGTGAVKITP-AHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEA 483 (1107)
Q Consensus 405 P~~~~~iPIi~d~~~Vd~~~GTG~V~~tP-aHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~ 483 (1107)
-++..|.. |-+.+ -++|.||.++++-
T Consensus 191 ---------------~~~~~g~r-~~~~~~K~~p~Df~lWk~~------------------------------------- 217 (501)
T 3sp1_A 191 ---------------DKDMTLPR-VDVDKFKRNKTDFVLWFTN------------------------------------- 217 (501)
T ss_dssp -----------------------------CCSSTTCEEEEEEC-------------------------------------
T ss_pred ---------------hhhccCCc-cCcccccCCchhhHhcCCC-------------------------------------
Confidence 00000100 00000 0122222111000
Q ss_pred HHHcCCeeceeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCee
Q 001289 484 LKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWC 563 (1107)
Q Consensus 484 L~~~gl~~~~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWc 563 (1107)
| . + ..+.+ -|
T Consensus 218 -----------------p-----~---------------~-------------~~~~~-------------------~W- 227 (501)
T 3sp1_A 218 -----------------S-----K---------------F-------------KDQEM-------------------KW- 227 (501)
T ss_dssp -----------------C-----C---------------------------------C-------------------CB-
T ss_pred -----------------C-----C---------------C-------------CCCCc-------------------ee-
Confidence 0 0 0 00000 12
Q ss_pred eeecCCCcccceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccC
Q 001289 564 VSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGW 643 (1107)
Q Consensus 564 ISRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lgw 643 (1107)
.--||.--|.||++ |. | +....+|
T Consensus 228 ---~spwG~GrPGWhiE-cs---------------------a------------------------------m~~~~lg- 251 (501)
T 3sp1_A 228 ---DSPWGFGYPSWHLE-CA---------------------A------------------------------MNLEYFK- 251 (501)
T ss_dssp ---CCTTCSEEECHHHH-HH---------------------H------------------------------HHHHHTT-
T ss_pred ---cCCCCCCCCCchHH-HH---------------------H------------------------------HHHHHcC-
Confidence 12377777877642 10 0 0001112
Q ss_pred CCCChhhhhhCCcCcccccccccchHHHHHHHHHHHhcCCCCccEEEEc-ceeeCCCCccccccCCCccCccccccccCc
Q 001289 644 PDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLH-PMIRDAHGRKMSKSLGNVIDPLEVINGISL 722 (1107)
Q Consensus 644 p~~~~d~~~~yP~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~H-g~v~D~~G~KMSKSlGNvIdP~dvI~g~~l 722 (1107)
-|.|++.+|.|++|+|...+++.+.+++|+ ||.++++| |||. .+|+|||||+||+|+|.|+++
T Consensus 252 ----------~~~DIH~gG~DLifpHheneiAqs~a~~g~-~~~~~w~H~g~v~-~~G~KMSKSlGN~it~~dll~---- 315 (501)
T 3sp1_A 252 ----------DALDIHLGGVDHIGVHHINEIAIAECFLNK-KWCDVFVHGEFLI-MDYNKMSKSRGNFITVKDLED---- 315 (501)
T ss_dssp ----------TCCCEEEEEGGGTTTHHHHHHHHHHHHHTS-CCCSEEEEECCEE-CC----------CCCHHHHHH----
T ss_pred ----------CCceEEeeccccccchHHHHHHHHHHccCC-CCCeEEEEeeeEe-eCCeEccccCCCcCCHHHHHh----
Confidence 145899999999999999999999999986 99999999 9998 699999999999999999998
Q ss_pred hhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCC-CCchHHHHHHHhccCccccccccHHHHHHHHHH----HHHHHHHH
Q 001289 723 EGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPE-CGTDALRFALVSYTAQSDKINLDIQRVVGYRQW----CNKLWNAV 797 (1107)
Q Consensus 723 ~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~-~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r~f----~nKl~N~~ 797 (1107)
+ ||+|++||||++. ....|++|+.+.+.+.+++ +++|||++
T Consensus 316 ---------------------------------~gyg~d~lR~~lls~-~yr~~l~fs~~~l~~a~~~~~~ll~rl~~~~ 361 (501)
T 3sp1_A 316 ---------------------------------QNFSPLDFRYLCLTS-HYRNQLKFSLDNLQASKIARENLINKLSYFY 361 (501)
T ss_dssp ---------------------------------TTCCHHHHHHHHHTS-CTTSCEECCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------cCCCHHHHHHHHHhc-cCCCCCccCHHHHHHHHHhhHHHHHHHHHHH
Confidence 7 9999999999986 7889999999999999999 99999998
Q ss_pred HHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 001289 798 RFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLN-SYEFSDAASTVYSWW 857 (1107)
Q Consensus 798 rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e-~~~f~~a~~~i~~f~ 857 (1107)
+.+............ . ... ...+..+...+.++|+ .++...|+..|++++
T Consensus 362 ~~~~~~~~~~~~~~~-~---~~~------~~~~~~~~~~f~~am~dDlnt~~al~~l~~~~ 412 (501)
T 3sp1_A 362 ESLDPVDLNTLNKDL-K---NFG------FSVEKEYYDSFVEKISFDLNVAQGLALLWEII 412 (501)
T ss_dssp HTCCHHHHHHHHSCT-T---SCS------SHHHHHHHHHHHHHHHBTSCHHHHHHHHHHHH
T ss_pred HHHHhhhcccccccc-c---chh------hhhHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 754211110000000 0 000 1234566778889997 699999999999886
No 18
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=5.3e-40 Score=384.79 Aligned_cols=139 Identities=22% Similarity=0.287 Sum_probs=112.8
Q ss_pred CcCcccccccccchHHHHHHHHHHHhcCCCCccEEEEc-ceeeCCCCccccccCCCccCccccccccCchhHHHHhhcCC
Q 001289 655 PTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLH-PMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGN 733 (1107)
Q Consensus 655 P~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~H-g~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~n 733 (1107)
|.|++.+|+||+|||...+++++..++|..||.++++| |+|. .+|+|||||+||+|+|.++++
T Consensus 244 ~~di~~~G~D~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~-~~G~KMSKS~GN~v~~~~ll~--------------- 307 (414)
T 3c8z_A 244 GLDIQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIG-WDGHKMSKSRGNLVLVSQLRA--------------- 307 (414)
T ss_dssp CEEEEEEEGGGTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC--------------CBHHHHHH---------------
T ss_pred CceEEEeccccccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEe-cCCeEcccccCCcCCHHHHhh---------------
Confidence 88999999999999999999999998898899999999 8997 599999999999999999998
Q ss_pred CChHHHHHHHhccCCCCCCCCCC-CCchHHHHHHHhccCccccccccHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCC
Q 001289 734 LDPKELEVAKKGQKADFPNGIPE-CGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPL 812 (1107)
Q Consensus 734 l~~~e~~~a~~~~~~~fp~gi~~-~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r~f~nKl~N~~rf~l~~l~~~~~p~~ 812 (1107)
+ ||+|++||||++ ++..+|++|+.+.+.+.++++++|||+++++ ++ +
T Consensus 308 ----------------------~g~g~D~lR~~ll~-~~~~~d~~fs~~~l~~~~~~l~~l~n~~~~~-----~~--~-- 355 (414)
T 3c8z_A 308 ----------------------QGVDPSAIRLGLFS-GHYREDRFWSNEVLDEANARLARWRSATALP-----EA--P-- 355 (414)
T ss_dssp ----------------------TTCCHHHHHHHHHT-SCTTSCBCCCHHHHHHHHHHHHHHHHHHTSS-----CB--S--
T ss_pred ----------------------ccCCcchheeEEEe-cCcCCCCCcCHHHHHHHHHHHHHHHHHHHhc-----cc--h--
Confidence 7 999999999998 7889999999999999999999999987532 10 0
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 001289 813 KLHPHNLPFSCKWILSVLNKAISRTASSL-NSYEFSDAASTVYSWW 857 (1107)
Q Consensus 813 ~~~~~~~~~~D~wil~~L~~~~~~v~~a~-e~~~f~~a~~~i~~f~ 857 (1107)
.++.+++.+.++| ++|+|+.|+..|++|+
T Consensus 356 ----------------~~~~~~~~v~~a~~d~~~~~~Al~~i~~~~ 385 (414)
T 3c8z_A 356 ----------------DATDVIARVRQYLADDLDTPKALAALDGWC 385 (414)
T ss_dssp ----------------CCHHHHHHHHHHHHBTCCHHHHHHHHHHHH
T ss_pred ----------------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 1256788899999 7999999999999997
No 19
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=100.00 E-value=2.8e-38 Score=374.13 Aligned_cols=346 Identities=18% Similarity=0.212 Sum_probs=249.5
Q ss_pred CcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHH
Q 001289 175 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVS 254 (1107)
Q Consensus 175 ~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~ 254 (1107)
-+++++.|-| +|.+|||||+++++.|+++||+|++||+|.++.|+|.+|.+|+..++ +.|.+
T Consensus 23 v~~yv~gPt~--y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~-----~~g~~----------- 84 (461)
T 1li5_A 23 VGMYVCGITV--YDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRAN-----ENGES----------- 84 (461)
T ss_dssp EEEEECCCBS--SSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHH-----HTTCC-----------
T ss_pred eeEEEcCCcC--CCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHH-----HcCCC-----------
Confidence 3677775544 59999999999999999999999999999999999999988755443 35654
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcc-ccCCccccCChhhHHHHHHHHHHHHHcCCEEEe-eeeeeecCCCCcccccccccc
Q 001289 255 EVWKWKDEYGGTILRQQRRLGASL-DWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRD-LRLVNWDCVLRTAISDIEVDY 332 (1107)
Q Consensus 255 ~~~~w~~~~~~~i~~ql~~lG~s~-DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~-~~~V~W~p~~~TaLsd~EVe~ 332 (1107)
++++++.+.+.+++.+++||+++ |+ +..|+ .|...++++|.+|.++|++|.+ ...|+||+.+- -+|
T Consensus 85 -~~~~~~~~~~~f~~~~~~LgI~~~d~--~~r~t--~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~~-------~~y 152 (461)
T 1li5_A 85 -FVAMVDRMIAEMHKDFDALNILRPDM--EPRAT--HHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTD-------PTY 152 (461)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTCCCCSB--CCBGG--GCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGC-------TTT
T ss_pred -HHHHHHHHHHHHHHHHHHcCCCCCcc--ccccc--chHHHHHHHHHHHHHCCCEEEecCCCEEEecccc-------ccc
Confidence 46789999999999999999998 63 22343 3889999999999999999998 78888887531 001
Q ss_pred cccCCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEecCCCCCccc
Q 001289 333 VDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIP 412 (1107)
Q Consensus 333 ~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~P~~~~~iP 412 (1107)
. +++++.+
T Consensus 153 --------------------------------------------------------------g---------~lsg~~~- 160 (461)
T 1li5_A 153 --------------------------------------------------------------G---------VLSRQDL- 160 (461)
T ss_dssp --------------------------------------------------------------T---------TTTTC---
T ss_pred --------------------------------------------------------------c---------cccCCCH-
Confidence 0 1111110
Q ss_pred eEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCeec
Q 001289 413 IICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRG 492 (1107)
Q Consensus 413 Ii~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~ 492 (1107)
.++.-|+.+. + + .
T Consensus 161 -------~~l~~g~rv~---~---------------------~------------------------------------~ 173 (461)
T 1li5_A 161 -------DQLQAGARVD---V---------------------V------------------------------------D 173 (461)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------HHhhcCCccc---c---------------------h------------------------------------h
Confidence 1111111000 0 0 0
Q ss_pred eeccccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeecCCCcc
Q 001289 493 AKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGH 572 (1107)
Q Consensus 493 ~~~~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~ 572 (1107)
.+.+ | .+.+. |-.. +.+ .+|+...||.
T Consensus 174 ~k~~----p-----~Df~l------wk~~---------------~~g-----------------------~~~w~s~WG~ 200 (461)
T 1li5_A 174 DKRN----P-----MDFVL------WKMS---------------KEG-----------------------EPSWPSPWGA 200 (461)
T ss_dssp -CCS----T-----TCEEE------EEEC---------------CTT-----------------------SCCBCCTTCS
T ss_pred cccC----c-----cceEE------EccC---------------CCC-----------------------CCcccCCCCC
Confidence 0000 0 00000 0000 001 1233457999
Q ss_pred cceeEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCCChhhhh
Q 001289 573 QIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKA 652 (1107)
Q Consensus 573 pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~d~DvlDtWFdSgl~p~s~lgwp~~~~d~~~ 652 (1107)
+.|.||.. | .+ + ....+|
T Consensus 201 g~PgWhie-c---------------------sa---------------------m---------~~~~lg---------- 218 (461)
T 1li5_A 201 GRPGWHIE-C---------------------SA---------------------M---------NCKQLG---------- 218 (461)
T ss_dssp EEECSSHH-H---------------------HH---------------------H---------HHHHHC----------
T ss_pred cCCCccch-h---------------------HH---------------------H---------HHHHhC----------
Confidence 99988642 1 00 0 000112
Q ss_pred hCCcCcccccccccchHHHHHHHHHHHhcCCCCccEEEEc-ceeeCCCCccccccCCCccCccccccccCchhHHHHhhc
Q 001289 653 FYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLH-PMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEE 731 (1107)
Q Consensus 653 ~yP~dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~H-g~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~ 731 (1107)
.|.|++.+|+||+|||....++.+..++|. ||.++++| |||.. +|+|||||+||+|+|.|+++
T Consensus 219 -~~~dih~gG~Dl~fpH~~~~~aq~~a~~g~-~~~~~~~h~g~v~~-~G~KMSKS~GN~v~~~dll~------------- 282 (461)
T 1li5_A 219 -NHFDIHGGGSDLMFPHHENEIAQSTCAHDG-QYVNYWMHSGMVMV-DREKMSKSLGNFFTVRDVLK------------- 282 (461)
T ss_dssp -SSEEEEECBGGGTTTHHHHHHHHHHHHSSS-CCEEEECCBCCEEE-TTBCCCGGGTCCCBHHHHHT-------------
T ss_pred -CCceEEeccCccCchHHHHHHHHHHHhcCC-CCCcEEEEeeEEEE-CCeEccccCCCccChhHHhh-------------
Confidence 267899999999999999999998888887 78888887 99984 89999999999999999998
Q ss_pred CCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCC
Q 001289 732 GNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPP 811 (1107)
Q Consensus 732 ~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~~r~f~nKl~N~~rf~l~~l~~~~~p~ 811 (1107)
+||+|++||||++ ++..+|++|+.+.+.+.++++++|||+++++ .. .
T Consensus 283 ------------------------~~g~dalR~~ll~-~~~~~~~~fs~~~l~~~~~~l~rl~n~~~~~----~~--~-- 329 (461)
T 1li5_A 283 ------------------------YYDAETVRYFLMS-GHYRSQLNYSEENLKQARAALERLYTALRGT----DK--T-- 329 (461)
T ss_dssp ------------------------TSCHHHHHHHHHS-SCTTSCEEECHHHHHHHHHHHHHHHHHHTTC----CT--T--
T ss_pred ------------------------hCCHHHHHHHHHc-CCcCCCCCCCHHHHHHHHHHHHHHHHHHHHh----hc--C--
Confidence 8999999999997 6788999999999999999999999988643 11 0
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhHhHHHHHh
Q 001289 812 LKLHPHNLPFSCKWILSVLNKAISRTASSL-NSYEFSDAASTVYSWWQYQFCDVFIEA 868 (1107)
Q Consensus 812 ~~~~~~~~~~~D~wil~~L~~~~~~v~~a~-e~~~f~~a~~~i~~f~~~~l~d~Yie~ 868 (1107)
.. . | +++.+...+.++| ++|+++.|+..|++|+ ..+|.|++.
T Consensus 330 --~~-----~-d-----~l~~~~~~~~~am~dd~n~~~Al~~l~~l~--~~~N~~~~~ 372 (461)
T 1li5_A 330 --VA-----P-A-----GGEAFEARFIEAMDDDFNTPEAYSVLFDMA--REVNRLKAE 372 (461)
T ss_dssp --SC-----C-C-----SCHHHHHHHHHHHHBTSCHHHHHHHHHHHH--HHHHHHHHH
T ss_pred --CC-----H-H-----HHHHHHHHHHHHHHhccCHHHHHHHHHHHH--HHHHHHHhc
Confidence 00 1 2 3667888999999 8999999999999997 567889864
No 20
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Probab=100.00 E-value=3.9e-37 Score=309.78 Aligned_cols=139 Identities=42% Similarity=0.740 Sum_probs=133.0
Q ss_pred ceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCcEEecCCCCCccceEecCccccCCCCCCceecC
Q 001289 353 GVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKIT 432 (1107)
Q Consensus 353 g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~ry~~l~Gk~~~~P~~~~~iPIi~d~~~Vd~~~GTG~V~~t 432 (1107)
|.+++++|++ +++.+|+|||||||||+|++||||||+|+||++|+|+++.|||+++.+||+.+++ |++++|||+||+|
T Consensus 4 ~~~~~v~F~~-~~~~~l~i~TTrP~Tl~g~~aiav~P~~~~~~~l~g~~~~~P~~~~~ipI~~~~~-V~~~~GTG~V~~~ 81 (147)
T 1wka_A 4 GKLYTLRYEV-EGGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTEVWIPILADPA-VEKDFGTGALKVT 81 (147)
T ss_dssp CEEEEEEEEB-TTSCEEEEEESCGGGGGGCCEEEECTTCTTTGGGTTCEEECTTSSCEEEEEECTT-CCTTSTTSEEEEC
T ss_pred ceEEEEEEEC-CCCcEEEEEECCceecccceEEEECCCCchHHHhcCCEEECCCCCCeeEEEEeCc-cccCCCCCcEEEc
Confidence 6789999999 6678999999999999999999999999999999999999999999999999995 9999999999999
Q ss_pred CCCCcchHHHHHHhCCccceeeCCCCccccCCCCC----CCCCChhhHHHHHHHHHHHcCCeeceecc
Q 001289 433 PAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLE----FEGMPRFKAREAVNEALKKKGLYRGAKDN 496 (1107)
Q Consensus 433 PaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~----f~Gl~~~~ar~~vi~~L~~~gl~~~~~~~ 496 (1107)
||||++||++|++|||+++++||++|+| ++| + |.||++++||++|++.|+++|++.+.+++
T Consensus 82 Pah~~~D~~~~~~~~L~~~~~id~~G~~--~~~-~~~~~~~Gl~~~~A~~~Ii~~L~~~g~l~~~~~~ 146 (147)
T 1wka_A 82 PAHDPLDYEIGERHGLKPVSVINLEGRM--EGE-RVPEALRGLDRFEARRKAVELFREAGHLVKEEDY 146 (147)
T ss_dssp TTTCHHHHHHHHHHTCCCCCSBCTTSBB--CST-TSCGGGTTSBHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred cCCCHHHHHHHHHcCCCcceEECCCCEE--cCC-CcccccCCcCHHHHHHHHHHHHHHCCCeeeeeEc
Confidence 9999999999999999999999999999 777 6 99999999999999999999999887654
No 21
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A
Probab=100.00 E-value=1.6e-33 Score=294.66 Aligned_cols=140 Identities=24% Similarity=0.364 Sum_probs=127.5
Q ss_pred EEEeeecCCC------cceEEEeeccccccccCcEEEEcCC---------Cccc-----------------------ccc
Q 001289 356 TSFAYPLEGG------LGEIVVATTRVETMLGDTAIAIHPE---------DARY-----------------------SHL 397 (1107)
Q Consensus 356 ~~~~y~l~~~------~~~i~vaTTrPeT~~gdtaiaV~P~---------d~ry-----------------------~~l 397 (1107)
.+++||+.+. +.+|+|||||||||+|++||||||+ +++| .+|
T Consensus 6 i~V~F~~~~~~~~~~~~~~l~i~TTrP~Tl~g~~aiav~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~G~~l 85 (186)
T 1wny_A 6 VYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTPVLKTFPGKAL 85 (186)
T ss_dssp EEEEEEBSCGGGGTCSSEEEEEEESCGGGGGGCCEEEECTTSEEEEEEETTEEEEEEHHHHHHHHCTTSCEEEEEEHHHH
T ss_pred EEEEEEeCCCccccCCCcEEEEEECCcchhhcceEEEECCCCcEEEEEeCCcchHHHHHHHHHHhhcCcEEEEEEEcccc
Confidence 4688898764 5789999999999999999999999 6677 469
Q ss_pred cCcEEecCCC---CCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCCCCccccCCCCCCCCCChh
Q 001289 398 HGKFAIHPFN---GRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRF 474 (1107)
Q Consensus 398 ~Gk~~~~P~~---~~~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~dG~~~~~~g~~f~Gl~~~ 474 (1107)
.|+++.|||. ++.+||+.+++ |++++|||+||++||||++||++|++||||++++||++|+++++ | |.||.++
T Consensus 86 ~g~~~~~P~~~~~~~~ipi~~~~~-V~~~~GTG~V~~aPahg~~D~~~~~~~~L~i~~~id~~G~~~~~-~--~~Gl~v~ 161 (186)
T 1wny_A 86 EGLPYTPPYPQALEKGYFVVLADY-VSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVE-P--FKGLYFR 161 (186)
T ss_dssp TTCBBCCSSCCCCSSCCBEEECTT-CCSSSSCSCEEECGGGCHHHHHHHHHHTCCCCCCBCTTSBBCST-T--CTTCBHH
T ss_pred cCcEEECCccccCCCEEEEEEeCc-CcCCCCcccEEEcCCCCHHHHHHHHHcCCceEeeeCCCccCccC-C--CCCcCHH
Confidence 9999999996 89999999995 99999999999999999999999999999999999999999976 5 9999999
Q ss_pred hHHHHHHHHHHHcCCeeceeccccc
Q 001289 475 KAREAVNEALKKKGLYRGAKDNEMR 499 (1107)
Q Consensus 475 ~ar~~vi~~L~~~gl~~~~~~~~~~ 499 (1107)
+||+.|++.|+++|++.+.+++.|+
T Consensus 162 ~A~~~Ii~~L~~~g~l~~~~~~~Hs 186 (186)
T 1wny_A 162 EANRAILRDLRGRGLLFKEESYLHS 186 (186)
T ss_dssp HHHHHHHHHHHHTTCEEEEEC----
T ss_pred HHHHHHHHHHHHCCCeecceeEEcC
Confidence 9999999999999999999988874
No 22
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A
Probab=99.97 E-value=6.5e-31 Score=277.20 Aligned_cols=138 Identities=25% Similarity=0.425 Sum_probs=122.8
Q ss_pred ceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCcc-------------cc--------------------cccC
Q 001289 353 GVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDAR-------------YS--------------------HLHG 399 (1107)
Q Consensus 353 g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~r-------------y~--------------------~l~G 399 (1107)
|.-.+++|++.+++.+|+|||||||||+|++||||||++++ |. .|.|
T Consensus 10 ~~g~~v~F~~~~~~~~l~i~TTrP~TL~g~~avav~P~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~l~G 89 (196)
T 2ajg_A 10 GEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATMEKKGVDTG 89 (196)
T ss_dssp -CEEEEEEEBTTCSSEEEEEESCGGGGGGCCEEEECTTSHHHHHHHTTCHHHHHHHHHHHHCCCCGGGGGGSCCCEEEEE
T ss_pred CceEEEEEEeCCCCcEEEEEECChhhhcCccEEEECCCCcEEEEEcCCHHHHHHHHHHhhcccccceEEEeeeeCCEEcC
Confidence 45568899998878899999999999999999999999862 21 2779
Q ss_pred cEEecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeC---------CCCccccC-----CC
Q 001289 400 KFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFT---------DDGKINSN-----GG 465 (1107)
Q Consensus 400 k~~~~P~~~~~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid---------~dG~~~~~-----~g 465 (1107)
+++.|||+++.+||+.+++ |++++|||+||++||||++||++|++|||+++++|+ ++|.++++ +|
T Consensus 90 ~~~~~P~~~~~ipV~~ad~-V~~~~GTG~V~~aPah~~~D~~~~~k~~L~i~~vI~~~~g~~~d~~~g~y~~~g~~~ns~ 168 (196)
T 2ajg_A 90 FKAVHPLTGEEIPVWAANF-VLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSG 168 (196)
T ss_dssp EEEECTTTCCEEEEEEETT-CCSSSSCSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSSCCCCSSSCCCSCCCBCSSG
T ss_pred CEEECCCCCCeeEEEEeCC-CccCCCCceEEECCCCCHHHHHHHHHcCCCceeEEeCCcCcccccccccccCCceEecCc
Confidence 9999999999999999995 999999999999999999999999999999999996 36666554 35
Q ss_pred CCCCCCChhhHHHHHHHHHHHcCCeec
Q 001289 466 LEFEGMPRFKAREAVNEALKKKGLYRG 492 (1107)
Q Consensus 466 ~~f~Gl~~~~ar~~vi~~L~~~gl~~~ 492 (1107)
+|.||.+++||+.|++.|+++|++.+
T Consensus 169 -~~~Gl~v~eA~~~Ii~~L~~~g~~~~ 194 (196)
T 2ajg_A 169 -EFNGLDHEAAFNAIADKLTAMGVGER 194 (196)
T ss_dssp -GGTTCCHHHHHHHHHHHHHHTTSEEE
T ss_pred -ccCCeEHHHHHHHHHHHHHHCCCcee
Confidence 79999999999999999999999764
No 23
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A
Probab=99.96 E-value=1.7e-30 Score=277.66 Aligned_cols=128 Identities=30% Similarity=0.475 Sum_probs=112.2
Q ss_pred ceEEEeeccccccccCcEEEEcCCCccc------------------------------------c----cccCcEEecCC
Q 001289 367 GEIVVATTRVETMLGDTAIAIHPEDARY------------------------------------S----HLHGKFAIHPF 406 (1107)
Q Consensus 367 ~~i~vaTTrPeT~~gdtaiaV~P~d~ry------------------------------------~----~l~Gk~~~~P~ 406 (1107)
.+|+|||||||||+|++||||||+++.. . .|.|+++.|||
T Consensus 38 ~~l~vwTTtPwTL~gn~~iav~pe~~yv~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~G~l~G~~~~~Pl 117 (219)
T 3o0a_A 38 IYIDVFTTRPDTVFGATFVVLAPEHPLVPVLACIGERLGNACYSDVENFVEKMKKMSTRERTMEEDKEGVFLGVYATNPA 117 (219)
T ss_dssp EEEEEEESCGGGGGGCCEEEECTTCTHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCCHHHHHSCSSCCEEEEEEEEECTT
T ss_pred CEEEEEECCcchhhcccEEEECCCCcEEEEEecCCccccchhHHHHHHHHHHHHhhccccceeEEEeeeEEcCCEEECCC
Confidence 6899999999999999999999997621 0 24689999999
Q ss_pred CCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceeeCC-------CCcccc-----CCCCCCCCCChh
Q 001289 407 NGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTD-------DGKINS-----NGGLEFEGMPRF 474 (1107)
Q Consensus 407 ~~~~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~~~L~~i~iid~-------dG~~~~-----~~g~~f~Gl~~~ 474 (1107)
+++.+||+.+++ |++++|||+||+|||||++||++|++||||++++||+ +|.+++ ++| +|.||+++
T Consensus 118 ~~~~iPI~~ady-V~~~~GTGaV~~aPaHd~~D~~~~~k~~Lpi~~vi~~~~~~~~~~g~ft~~g~~~~~~-~~~Gl~~~ 195 (219)
T 3o0a_A 118 NGEKIPVWSANY-VLYEYGTGAIMCVPAHDQRDWEFAKKYDLPIKVVVKPEGAWDFEKGAYEGKGTLVNSD-GFDGLDSE 195 (219)
T ss_dssp TCCEEEEEEETT-SCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCCEECSSCCCTTTCCCCSCCEECSCG-GGTTCBHH
T ss_pred CCCeeeEEEecc-cccCCCCCeEEECCCCCHHHHHHHHHcCCCceeeeCCccccccccccccccceEecCC-CCCCCCHH
Confidence 999999999995 9999999999999999999999999999999999987 344433 457 89999999
Q ss_pred hHHHHHHHHHHHcCCeeceecc
Q 001289 475 KAREAVNEALKKKGLYRGAKDN 496 (1107)
Q Consensus 475 ~ar~~vi~~L~~~gl~~~~~~~ 496 (1107)
+||++|++.|+++|++.+..+|
T Consensus 196 eA~~~Ii~~L~~~g~l~~~~~y 217 (219)
T 3o0a_A 196 TAKRKITEWLQDRGLGEKKVSY 217 (219)
T ss_dssp HHHHHHHHHHHHTTSEEEC---
T ss_pred HHHHHHHHHHHHCCCeeeeeee
Confidence 9999999999999999877654
No 24
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.96 E-value=1.1e-26 Score=273.75 Aligned_cols=197 Identities=18% Similarity=0.161 Sum_probs=131.6
Q ss_pred cccccccccchHHHHHHHHHHHhcCCCCcc-EEEEccee-eCCCCc--cccccCCCccCccccccccCchhHHHHhhcCC
Q 001289 658 VLETGHDILFFWVARMVMLGIKLGGEVPFT-KVYLHPMI-RDAHGR--KMSKSLGNVIDPLEVINGISLEGLHKRLEEGN 733 (1107)
Q Consensus 658 l~~tG~Dil~fW~armi~~~~~l~g~~PFk-~V~~Hg~v-~D~~G~--KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~n 733 (1107)
+++.|.|+. .|+.++. ..+...|..|.+ .++.|||| ++.+|+ |||||+||+|+|.|+++
T Consensus 239 Iyv~G~dq~-~~f~~l~-~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dll~--------------- 301 (464)
T 3fnr_A 239 INIWGADHH-GYIPRMK-AAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVD--------------- 301 (464)
T ss_dssp EEEEEGGGG-GGHHHHH-HHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHH---------------
T ss_pred EEEecCcHH-HHHHHHH-HHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcCCCCCCHHHHHh---------------
Confidence 345588876 6788754 455666766766 78899999 566674 99999999999999999
Q ss_pred CChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccccHHHHHH--------HHHH-HHHHHHHHHHHhhhh
Q 001289 734 LDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG--------YRQW-CNKLWNAVRFSMSKL 804 (1107)
Q Consensus 734 l~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~~~Dinf~~~~v~~--------~r~f-~nKl~N~~rf~l~~l 804 (1107)
++|+|++|||+++. ....|++||++.+.. |-++ ..++.++++..-
T Consensus 302 ----------------------~~g~dalRy~~l~~-~~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~~--- 355 (464)
T 3fnr_A 302 ----------------------EIGSDALRYIFLSK-KCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAG--- 355 (464)
T ss_dssp ----------------------HHCHHHHHHHTTSS-CTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTT---
T ss_pred ----------------------hccHHHHHHHHHhc-CCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh---
Confidence 89999999999875 456799999987743 1111 233444444321
Q ss_pred CCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHHHHhhcccccCCCcccHHHH
Q 001289 805 GEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASER 884 (1107)
Q Consensus 805 ~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~~~~~~~~~~ 884 (1107)
..++.+. ..+...++..|++++.+|.++...+.+++++|+|+.+++.+++|. ..|..+|-+ + +.+..++ +....|
T Consensus 356 ~~~~~~~-~~~~~~L~~~e~~Ll~~L~~~~~~v~~a~~~~ep~~i~~yL~~La-~~~n~fY~~-~-~vl~~~~-~~~~aR 430 (464)
T 3fnr_A 356 KKIDDVM-KADLQSLNQDGVNLLFEALNLKAVLNDAFEARALQKIPDYLKNLA-ANFHKFYNE-N-KVVGSAN-ENDLLK 430 (464)
T ss_dssp CCTTTST-TCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHTCTTHHHHHHHHHH-HHHHHHHHH-C-CCTTSTT-HHHHHH
T ss_pred ccCCCcc-ccChhhCChHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHh-C-cCCCCCH-HHHHHH
Confidence 1122221 112223455599999999999999999999999999999999997 677777644 3 4443322 211123
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 001289 885 SAAQHVLWVCLETGLRLLHP 904 (1107)
Q Consensus 885 ~~a~~~L~~~l~~~l~LL~P 904 (1107)
....... +|..+|.||--
T Consensus 431 L~L~~a~--vL~~gL~lLGi 448 (464)
T 3fnr_A 431 LFSLVAL--SIKTAFSLMGI 448 (464)
T ss_dssp HHHHHHH--HHHHHHHHTTC
T ss_pred HHHHHHH--HHHHHHHhcCC
Confidence 2222222 67777777753
No 25
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A*
Probab=99.95 E-value=2.5e-28 Score=267.68 Aligned_cols=136 Identities=24% Similarity=0.307 Sum_probs=115.5
Q ss_pred CCCcceEEEeeccccccccCcEEEEcCCCc----------------c------------------------cccccCcEE
Q 001289 363 EGGLGEIVVATTRVETMLGDTAIAIHPEDA----------------R------------------------YSHLHGKFA 402 (1107)
Q Consensus 363 ~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~----------------r------------------------y~~l~Gk~~ 402 (1107)
.+.+.+|+|||||||||||++||||||+.+ + +.+|+|+++
T Consensus 29 ~~~~~~l~v~TTrP~TL~g~talav~Pe~~yv~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~L~G~~~ 108 (261)
T 2wfg_A 29 KENKVYLVAATLRPETMYGQTCCFVSPKIDYGVFDAGNGDYFITTERAFKNMSFQNLTPKRGYYKPLFTINGKTLIGSRI 108 (261)
T ss_dssp TTSEEEEEEEESCGGGGGGCCEEEECTTCEEEEEECSTTEEEEECHHHHHHHTTTTCSSSTTCCCCSEEEEHHHHTTCEE
T ss_pred CCCCCEEEEEECCchHHhhhheEEECCCCceEEEEecCceEEEhHHHHHHHHHHHhhhhcccccEEEEEEecccccCCEE
Confidence 344678999999999999999999999932 1 224899999
Q ss_pred ecCCC-CCccceEecCccccCCCCCCceecCCCCCcchHHHHHH-------hC-------CccceeeCC--CCccc----
Q 001289 403 IHPFN-GRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKR-------HN-------LEFINIFTD--DGKIN---- 461 (1107)
Q Consensus 403 ~~P~~-~~~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~~~~-------~~-------L~~i~iid~--dG~~~---- 461 (1107)
+|||+ ++.+||+.+++ |++++|||+||++||||++||++|++ || ||++++|++ +|.++
T Consensus 109 ~~Pl~~~~~ipV~~ady-V~~~~GTG~V~~vPaHd~~Dy~~~~kl~~~~~~ygi~~~~~~L~i~~vId~~~~g~~~~~~~ 187 (261)
T 2wfg_A 109 DAPYAVNKNLRVLPMET-VLATKGTGVVTCVPSDSPDDFVTTRDLANKPEYYGIEKDWVQTDIVPIVHTEKYGDKCAEFL 187 (261)
T ss_dssp ECTTCSSCSEEEEECTT-CCTTSTTSCEEECTTTCHHHHHHHHHHHHSTTTTTCCGGGCCCCCCCCEEBTTTBTCHHHHH
T ss_pred ECCCCCCceeEEEeecc-ccCCCCCCeeEEcCCCCHHHHHHHHHhhcchhhcCCccccccCCceeEEcCcccCccchhhh
Confidence 99998 68899999995 99999999999999999999999999 99 899999987 44332
Q ss_pred -----------------------------c--CCCCCCCCCChhhHHHHHHHHHHHcCCeeceecccccc
Q 001289 462 -----------------------------S--NGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRL 500 (1107)
Q Consensus 462 -----------------------------~--~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~~~~~~~ 500 (1107)
. ++| +|.||++++||+.|++.|+++|++.....+.|+-
T Consensus 188 ~~~~~i~s~~d~~~l~~a~~~~y~~G~~~g~~~~g-~f~Gl~v~eA~~~Ii~~L~~~G~~~~~~~~~h~~ 256 (261)
T 2wfg_A 188 VNDLKIQSPKDSVQLANAKELAYKEGFYNGTMLIG-KYKGDKVEDAKPKVKQDLIDEGLAFVYNEPELEH 256 (261)
T ss_dssp HHHTTCCSTTCHHHHHHHHHHHHHHHHHHCEECSS-TTTTSBHHHHHHHHHHHHHHTTSEEEECC-----
T ss_pred hccccccccchhhhhhhhhhhhhhcccccceEecc-ccCCeEHHHHHHHHHHHHHHCCCeeeeeeeeecc
Confidence 1 166 8999999999999999999999999988877754
No 26
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Probab=99.94 E-value=6.1e-27 Score=255.80 Aligned_cols=126 Identities=21% Similarity=0.299 Sum_probs=109.7
Q ss_pred CCcceEEEeeccccccccCcEEEEcCCCc----------------c------ccc------------------ccCcEEe
Q 001289 364 GGLGEIVVATTRVETMLGDTAIAIHPEDA----------------R------YSH------------------LHGKFAI 403 (1107)
Q Consensus 364 ~~~~~i~vaTTrPeT~~gdtaiaV~P~d~----------------r------y~~------------------l~Gk~~~ 403 (1107)
+.+.+|+|||||||||+|+|||||||+++ + |++ |+|++++
T Consensus 27 ~~~~~l~v~TTrP~TL~g~talav~Pe~~yv~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~G~~~~ 106 (252)
T 2wfd_A 27 GKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVNGDIFICTQKAARNMSYQGFTKDNGVVPVVKELMGEEILGASLS 106 (252)
T ss_dssp TSCEEEEEEESCGGGGGGCCEEEECSSSCCEEEECTTSCEEEECHHHHHHHHTTTSSSSTTCCCEEEECCHHHHTTCEEE
T ss_pred CCCCEEEEEECChHHHhhhheEEECCCCcEEEEEecCCcEEEEhhhhHHHHHHHHhhccCcccEEEEEEEcccccCCEEE
Confidence 45679999999999999999999999973 1 333 8999999
Q ss_pred cCCCC-CccceEecCccccCCCCCCceecCCCCCcchHHH----------HHHhCCc--------cceeeCC--------
Q 001289 404 HPFNG-RKIPIICDAILVDPKFGTGAVKITPAHDPNDFDV----------GKRHNLE--------FINIFTD-------- 456 (1107)
Q Consensus 404 ~P~~~-~~iPIi~d~~~Vd~~~GTG~V~~tPaHd~~D~~~----------~~~~~L~--------~i~iid~-------- 456 (1107)
|||++ +.+||+.+++ |++++|||+||++||||++||++ +++|||+ ++++|+.
T Consensus 107 ~Pl~~~~~ipV~~ady-V~~~~GTG~V~~vPaHd~~D~~~~~~l~~~~~fa~kygL~~~~~~~~~~~~vI~~~~~g~~~~ 185 (252)
T 2wfd_A 107 APLTSYKVIYVLPMLT-IKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAKYGIRDDMVLPFEPVPVIEIPGFGNLSA 185 (252)
T ss_dssp CSSCSSSCEEEEECSC-CCSSSSCSSEEECTTTCHHHHHHHHHHHHCSHHHHTTTCCGGGTTTCCCCCCEEBTTTBSSHH
T ss_pred cCCCCCceeEEEEeCc-ccCCCCCCeEEEcCCCCHHHHHHHhhhccchhHHHHcCCCchhccccCceeEEecCcccccch
Confidence 99999 5899999995 99999999999999999999994 7889988 4666642
Q ss_pred -------------------------------CCccccCCCCCCCCCChhhHHHHHHHHHHHcCCeece
Q 001289 457 -------------------------------DGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGA 493 (1107)
Q Consensus 457 -------------------------------dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~ 493 (1107)
+|+|+ +| +|.||++++||+.|++.|+++|++...
T Consensus 186 ~~~~~~~~i~~~~d~~~l~~~~~~~y~~~~~~G~~~--~~-~~~Gl~v~eA~~~Ii~~L~~~g~~~~~ 250 (252)
T 2wfd_A 186 VTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIML--VD-GFKGQKVQDVKKTIQKKMIDAGDALIY 250 (252)
T ss_dssp HHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCEEC--ST-TSTTCBHHHHHHHHHHHHHHTTSEEEE
T ss_pred hhhhhhccccCcchhhhhhhhhhhhccccccCceEe--ee-ccCCeEHHHHHHHHHHHHHHCCCCccc
Confidence 46776 67 899999999999999999999987654
No 27
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.94 E-value=1.1e-25 Score=274.51 Aligned_cols=194 Identities=18% Similarity=0.108 Sum_probs=121.1
Q ss_pred EEEEcceeeCCCCccccccCCCccCccccccccCchhHHHHhhc--CCCChHHHHHHHhccCCCCCCCCCCCCchHHHHH
Q 001289 688 KVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEE--GNLDPKELEVAKKGQKADFPNGIPECGTDALRFA 765 (1107)
Q Consensus 688 ~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~--~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLRf~ 765 (1107)
.++.||||+ .+|+|||||+||+|+|.|+++.. .+...+.+.+ ..+++.| +.|. .+|+|++||+
T Consensus 381 ~H~~~g~v~-~~g~KMSKr~Gn~v~l~dll~~~-~~~~~~~~~~~~~~~~~~e-~~a~------------~vg~~aiRyf 445 (592)
T 1iq0_A 381 HHLAYETVL-LEGRQMSGRKGLAVSVDEVLEEA-TRRARAIVEEKNPDHPDKE-EAAR------------MVALGAIRFS 445 (592)
T ss_dssp EEEEECCEE-ETTBCSCC----CCBHHHHHHHH-HHHHHHHHHHHCTTCSCHH-HHHH------------HHHHHHHHHH
T ss_pred EEEEeeEEE-cCCCcccCCCCCccCHHHHHHHH-HHHHHHHHHhhCCCCCcHH-HHHH------------hhcHHHHHHH
Confidence 578899998 68999999999999999999721 1223333322 2344444 3332 4999999999
Q ss_pred HHhccCccccccccHHHHHHHHH-HHHHHHHHHHHHh---hhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 001289 766 LVSYTAQSDKINLDIQRVVGYRQ-WCNKLWNAVRFSM---SKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSL 841 (1107)
Q Consensus 766 L~~~~~~~~Dinf~~~~v~~~r~-f~nKl~N~~rf~l---~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~ 841 (1107)
+++... ..|++||++.+....+ -.+-+-++...+. .+...+..+ . .......++-++..|.++...+.+++
T Consensus 446 ~L~~~~-~~~~~Fd~d~~~~~~~~~~~ylqya~aR~~sil~k~~~~~~~--~--~~l~~~~e~~L~~~l~~~~~~v~~a~ 520 (592)
T 1iq0_A 446 MVKTEP-KKQIDFRYQEALSFEGDTGPYVQYAHARAHSILRKAGEWGAP--D--LSQATPYERALALDLLDFEEAVLEAA 520 (592)
T ss_dssp HHHSCT-TSCEEECHHHHHCSSSSSHHHHHHHHHHHHHHHHHHCCCCCC--C--GGGCCHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHhcCC-CCCCeecHHHHHHHhccchHHHHHHHHHHHHHHHhhcccCCC--c--cCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 998654 6899999998864322 1122222222221 122211111 1 11124556778889999999999999
Q ss_pred hcCCHHHHHHHHHHHHHHhHhHHHHHhhcc-----cccCCCcccHHHHHHHHHHHHHHHHHHHHHHh
Q 001289 842 NSYEFSDAASTVYSWWQYQFCDVFIEAIKP-----YFAGDNPAFASERSAAQHVLWVCLETGLRLLH 903 (1107)
Q Consensus 842 e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~-----~l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~ 903 (1107)
++++++.+++.++++. ...|.|++.++| ++...+++....|.........+|..+|.||.
T Consensus 521 ~~~~p~~~~~yl~~La--~~fn~fy~~~~~~~~~~~vl~~~~~~~~~RL~L~~a~~~vl~~~l~lLG 585 (592)
T 1iq0_A 521 EERTPHVLAQYLLDLA--ASWNAYYNARENGQPATPVLTAPEGLRELRLSLVQSLQRTLATGLDLLG 585 (592)
T ss_dssp HHTCHHHHHHHHHHHH--HHHHHHHHCEETTEESSCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHH--HHHHHHHHhccccccCCceeCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999985 555667787764 43333332122344444556667777888875
No 28
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis}
Probab=99.93 E-value=2.6e-26 Score=250.79 Aligned_cols=156 Identities=19% Similarity=0.202 Sum_probs=126.3
Q ss_pred CCCCcccccccccccccCCcceeeecCcccccccceEEEEeeecCCCcceEEEeeccccccccCcEEEEcCCCc------
Q 001289 319 CVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDA------ 392 (1107)
Q Consensus 319 p~~~TaLsd~EVe~~e~~~~t~~~vp~y~~~~~~g~l~~~~y~l~~~~~~i~vaTTrPeT~~gdtaiaV~P~d~------ 392 (1107)
..++|+||+-|-.. ..+..||.++ .+++.+.+.+++||||||||||||+||||||+.+
T Consensus 48 ~~~~~~l~~f~~~~--------------~~k~~~~~~~--~~~l~g~~v~lvIWTTTPWTLPgNtAiaVnPd~~Yv~v~~ 111 (311)
T 3pz6_A 48 EKLNIKLPRFYSNP--------------KNKAIFDQLW--ENQVDNAKVYLLAATLRPETMVGQTNCWVLPTGRYGAYYI 111 (311)
T ss_dssp CTTSCCCCCCCCCH--------------HHHHHHHHHH--TTTCCSCEEEEEEEESCGGGGGGCCEEEECTTCEEEEEEE
T ss_pred HHhCCCccccccCC--------------Ccccccchhe--eeecCCCCEEEEEEECCchhhhhheEEEECCCCcEEEEEE
Confidence 35677777765531 1234456666 6688888899999999999999999999999942
Q ss_pred ----c------------cc--------------------cccCcEEecCCCCC-ccceEecCccccCCCCCCceecCCCC
Q 001289 393 ----R------------YS--------------------HLHGKFAIHPFNGR-KIPIICDAILVDPKFGTGAVKITPAH 435 (1107)
Q Consensus 393 ----r------------y~--------------------~l~Gk~~~~P~~~~-~iPIi~d~~~Vd~~~GTG~V~~tPaH 435 (1107)
+ |+ +|+|+++.|||.++ .+||+.+++ |++++|||+||++|||
T Consensus 112 ~~ge~~IvAe~l~e~l~~q~~~~~~~~~~~~vl~~~kG~eL~G~~~~hPl~~~~~ipIl~ad~-Vt~d~GTGiVh~aPaH 190 (311)
T 3pz6_A 112 NKDEVIIVSEHAAVNMAHQGLNNNKPFGELDFISEISGSDLLLATVRAPLSPYEQIFVLPLET-IKMDKGTGIVTSVPSD 190 (311)
T ss_dssp ETTEEEEEEHHHHHHHHTTTCSSSCCTTCCCEEEEEEHHHHTTCEEECTTCSSSCEEEEECTT-CCTTSTTSEEEECTTT
T ss_pred CCCCEEEEeHHHHHHHHHhcccccccCCCcEEEEEEEhHHhcCCEEECCCCCCCeeEEEecCc-CccCCCcceEEeCCCC
Confidence 1 11 37799999999997 999999995 9999999999999999
Q ss_pred CcchHHHHHH-----------hC---------CccceeeCC---------------------------------------
Q 001289 436 DPNDFDVGKR-----------HN---------LEFINIFTD--------------------------------------- 456 (1107)
Q Consensus 436 d~~D~~~~~~-----------~~---------L~~i~iid~--------------------------------------- 456 (1107)
|++||.++++ +| +++|.||+.
T Consensus 191 g~dDy~~~~d~Lk~k~~~~~Kygi~~e~v~~~~e~ipvI~~~g~G~~~A~~~ve~~~I~sq~D~~kLeeA~~~~Y~~ef~ 270 (311)
T 3pz6_A 191 APDDYACYKDILENRNGIAEKYGVDVGLMLEPYSPLPIIEIPDIGTLSAVRLCEESNVSSLHDRAKLTQIKEICYTKGFY 270 (311)
T ss_dssp CHHHHHHHHHHHTTGGGHHHHTTCCHHHHTTTSCCCCCEEBTTTBSSHHHHHHHHTTC----CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccHHHHHHcCCchHHhccCCCeEEEEecCCCCCccHHHHHHHhCCCCcchHHHHHHHHHHHHhccCC
Confidence 9999997776 66 478888852
Q ss_pred CCccccCCCCCCCCCChhhHHHHHHHHHHHcCCeecee
Q 001289 457 DGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAK 494 (1107)
Q Consensus 457 dG~~~~~~g~~f~Gl~~~~ar~~vi~~L~~~gl~~~~~ 494 (1107)
+|.|. +| +|.|+++.+||+.|+++|.++|......
T Consensus 271 ~Gvm~--~g-~~~G~~V~eAk~~i~~~L~~~g~a~~yy 305 (311)
T 3pz6_A 271 TGIMK--MG-PFAGQSVKDCKQSCRDLLVQNNQCIVYS 305 (311)
T ss_dssp HCEEC--SS-TTTTSBHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCEEe--ee-ccCCeEHHHHHHHHHHHHHHCCCceEEc
Confidence 35554 57 8999999999999999999999876553
No 29
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.92 E-value=1.1e-23 Score=257.87 Aligned_cols=191 Identities=16% Similarity=0.112 Sum_probs=122.6
Q ss_pred EEEEcceeeCCCCccccccCC--CccCccccccccCchhHHHHhh--cCCCChHHHHHHHhccCCCCCCCCCCCCchHHH
Q 001289 688 KVYLHPMIRDAHGRKMSKSLG--NVIDPLEVINGISLEGLHKRLE--EGNLDPKELEVAKKGQKADFPNGIPECGTDALR 763 (1107)
Q Consensus 688 ~V~~Hg~v~D~~G~KMSKSlG--NvIdP~dvI~g~~l~~l~~~l~--~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDaLR 763 (1107)
.++.||||. .+|.|||||+| |+|+|.|+++.. .+..++.+. ..++++.|.+...+ .+|+||+|
T Consensus 411 ~h~~~g~V~-~~~~KMSkr~G~~n~v~l~dLl~e~-~~~a~~~~~~~~~~~~~~~~~~~a~-----------~vg~~AvR 477 (629)
T 2zue_A 411 YHLAYEHVE-RPEGKFSGRKGTWVGFTVDEVIQEA-VKRARELIEEKNPALSDEEKAEVAE-----------KVGIGAIR 477 (629)
T ss_dssp EEEEECCEE-BTTBCCCTTTTTTTTCBHHHHHHHH-HHHHHHHHHHHCTTSCHHHHHHHHH-----------HHHHHHHH
T ss_pred EEEEeeeEE-cCCCcccCCCCCCCeeeHHHHHHHH-HHHHHHHHHhcCcccchhhHHHHHH-----------hcChhHhh
Confidence 588999998 68899999999 999999999721 111222222 12355555543221 59999999
Q ss_pred HHHHhccCccccccccHHHHHH------------HHHHHHHHHHHHHHHhhhhCCCCCC-----CCCCCCCCCChhhHHH
Q 001289 764 FALVSYTAQSDKINLDIQRVVG------------YRQWCNKLWNAVRFSMSKLGEGFVP-----PLKLHPHNLPFSCKWI 826 (1107)
Q Consensus 764 f~L~~~~~~~~Dinf~~~~v~~------------~r~f~nKl~N~~rf~l~~l~~~~~p-----~~~~~~~~~~~~D~wi 826 (1107)
|++++.. ...|++||++.+.. +.+.|.-+.++.. .+..+ ............++-+
T Consensus 478 y~~L~~~-~~~~~~Fd~d~~~~~~~~t~~ylqYa~aRi~Silrka~~-------~~~~~~~~~~~~~~~~~l~~~~e~~L 549 (629)
T 2zue_A 478 YNLIKYS-PDKKIIFRWEDVLNFEGESAPYIQYAHARCSSILRKAEE-------EGIKVDPETLFKNADFTKLSEREREL 549 (629)
T ss_dssp HHHHSSC-TTSCEECCHHHHSCCSSSSHHHHHHHHHHHHHHHHHHHH-------TTCCCCHHHHHHHCCCSSCCHHHHHH
T ss_pred HHHHhcC-CCCCCeecHHHHHHHhcCchHHHHHHHHHHHHHHHhhhc-------cccccccccccccccccCCCHHHHHH
Confidence 9999865 47899999998752 2223332222210 00000 0000011124567778
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHh
Q 001289 827 LSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLH 903 (1107)
Q Consensus 827 l~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~~~~~~~~~~~~a~~~L~~~l~~~l~LL~ 903 (1107)
+..|..+...+.+++++++++.++..++++. ..|..+| +.+ +.+.. +++....|.........+|..+|.||.
T Consensus 550 ~~~l~~fp~~v~~a~~~~~p~~l~~yl~~La-~~fn~fy-~~~-~vl~~-~~~~~~~RL~L~~a~~~vL~~gL~lLG 622 (629)
T 2zue_A 550 VIMLSKFPRIVEQAGKDVKPHLIAWFANELA-SLFNKFY-MDH-PVLKA-EEGVREARLLLVMAVEQVLKNALYLMG 622 (629)
T ss_dssp HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHH-HHHHHHH-HHC-CSTTS-CTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHHHHH-Hhc-cccCC-ChHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999986 5665555 544 44433 232122344444566677888888875
No 30
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.88 E-value=1.2e-23 Score=253.44 Aligned_cols=124 Identities=11% Similarity=0.157 Sum_probs=95.2
Q ss_pred EEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccC----hhHHHHHHHHHHHHh--CCCccccChH
Q 001289 177 FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAG----IATQVVVEKKLMRER--KLTRHDIGRE 250 (1107)
Q Consensus 177 f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~G----i~~q~~vEk~l~~~~--g~~~~d~~re 250 (1107)
.+++...|||||.||||||++.++.|+++||.|++|++|.|+.|+|.+| +|.. +.+. .++ |+++.+++..
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~--~~~a--~~~~~G~~~~~~p~p 96 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRN--VPQE--WKDYLGMPISEVPDP 96 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSS--SCGG--GGGGTTSBGGGSCCT
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhH--HHHH--HHHHcCCCcccCCcc
Confidence 4455557999999999999999999999999999999999999999999 2211 0000 123 6666444432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccccCCccccCChhhHH-HHHHHHHHHHHcC-CEEE
Q 001289 251 QFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSK-AVTEAFVRLYKEG-LIYR 310 (1107)
Q Consensus 251 ~f~~~~~~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~-~v~~~F~~L~~~G-lIyr 310 (1107)
| ..|++|++++.+.|.+.|+.||+++|+ +++++. |.. .+++++.+|.++| .||+
T Consensus 97 -~-~~~~~~~~~~~~~~~~~l~~Lgi~~D~---~~~se~-~~~g~~~~~i~~L~~~G~~iy~ 152 (523)
T 1irx_A 97 -W-GCHESYAEHFMRKFEEEVEKLGIEVDL---LYASEL-YKRGEYSEEIRLAFEKRDKIME 152 (523)
T ss_dssp -T-SSSSSHHHHHHHHHHHHHHTTTCCCEE---EEHHHH-HHTTTTHHHHHHHHHTHHHHHH
T ss_pred -h-hhHHHHHHHHHHHHHHHHHHcCCCceE---Eechhh-ccchHHHHHHHHHHHchHHHHH
Confidence 2 236789999999999999999998773 244433 666 7899999999999 7774
No 31
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.74 E-value=6.1e-16 Score=188.23 Aligned_cols=133 Identities=16% Similarity=0.216 Sum_probs=97.3
Q ss_pred CCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCC-----------
Q 001289 174 KPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKL----------- 242 (1107)
Q Consensus 174 k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~----------- 242 (1107)
.++.+|-.-=|||||.+||||+++.++.|+++|+.+..||+|..+.....+|..+-..+.- + .+.|.
T Consensus 142 ~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~-~-~~~g~~~~~~~~~i~~ 219 (607)
T 1f7u_A 142 NKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVG-F-ERYGNEEALVKDPIHH 219 (607)
T ss_dssp CCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHH-H-HHHCCHHHHHHCHHHH
T ss_pred CCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHH-H-HHhCchhhccCCChHH
Confidence 3478888899999999999999999999999999999999999999998888876443311 0 00110
Q ss_pred -----------------------Ccccc----------ChHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-cCCccccCC
Q 001289 243 -----------------------TRHDI----------GREQFVSEVWKWKDEYGGTILRQQRRLGASLD-WSRECFTMD 288 (1107)
Q Consensus 243 -----------------------~~~d~----------~re~f~~~~~~w~~~~~~~i~~ql~~lG~s~D-W~r~~~T~d 288 (1107)
...+. |.++-++..+++++.+...+++.+.+||+.+| |.++-+-
T Consensus 220 l~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~~~ES~~-- 297 (607)
T 1f7u_A 220 LFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQV-- 297 (607)
T ss_dssp HHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGGC--
T ss_pred HHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeecCcchh--
Confidence 00000 11222222345678888999999999999998 5544321
Q ss_pred hhhHHHHHHHHHHHHHcCCEEEee
Q 001289 289 EKRSKAVTEAFVRLYKEGLIYRDL 312 (1107)
Q Consensus 289 ~~~~~~v~~~F~~L~~~GlIyr~~ 312 (1107)
+...+..++.+|.++|++|...
T Consensus 298 --~~~~~~~vi~~L~~kG~~ye~d 319 (607)
T 1f7u_A 298 --SKESMLKAIDLFKEKGLTHEDK 319 (607)
T ss_dssp --CHHHHHHHHHHHHHTTCEEEET
T ss_pred --hhhHHHHHHHHHHhCCCEEEEC
Confidence 2256899999999999999764
No 32
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=98.77 E-value=2.2e-08 Score=119.08 Aligned_cols=94 Identities=27% Similarity=0.361 Sum_probs=66.9
Q ss_pred EEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHH
Q 001289 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1107)
Q Consensus 178 ~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~ 257 (1107)
+++==||.|||.||||||++.++...++|- ..|.-++-+-=+|.. +.
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~Ar~--~~G~~iLRieDtD~~-------------------R~------------ 143 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYARK--YDGRLILRIEDTDPR-------------------RV------------ 143 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHHH--TTCEEEEEECCCCGG-------------------GC------------
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEECcCCcc-------------------cc------------
Confidence 345558999999999999999997777763 244444444444421 00
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEE
Q 001289 258 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYR 310 (1107)
Q Consensus 258 ~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr 310 (1107)
..+|.+.|.++|+.||+ +|+..++.+ +|.....++..+|.++|+.|.
T Consensus 144 --~~e~~~~I~edL~wLGl--~wd~~~~qS--dr~~~y~~~~~~Li~~G~AY~ 190 (553)
T 3aii_A 144 --DPEAYDMIPADLEWLGV--EWDETVIQS--DRMETYYEYTEKLIERGGAYV 190 (553)
T ss_dssp --CTTHHHHHHHHHHHHTC--CCSEEEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred --cHHHHHHHHHHHHHcCC--CCCCCcccc--cCHHHHHHHHHHHHHcCCcee
Confidence 23467899999999995 554555443 567778889999999999996
No 33
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=98.56 E-value=3.6e-07 Score=108.52 Aligned_cols=89 Identities=31% Similarity=0.463 Sum_probs=64.3
Q ss_pred CCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHH
Q 001289 183 PPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDE 262 (1107)
Q Consensus 183 PPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~ 262 (1107)
+|.|||.||||||++.+....++|- ..|.-++.+-=+|. .|. ..+
T Consensus 7 APSPtG~lHiG~artal~n~l~Ar~--~~G~filRieDtD~-------------------~R~--------------~~~ 51 (492)
T 2cfo_A 7 APSPTGNLHIGTARTAVFNWLYARH--RGGKFILRIEDTDR-------------------ERS--------------RPE 51 (492)
T ss_dssp CCCTTSCCBHHHHHHHHHHHHHHHH--TTCEEEEEECCCSS-------------------SSC--------------CHH
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHh--cCCeEEEEEeeCCc-------------------ccc--------------chH
Confidence 7999999999999999987766663 34555555555553 111 145
Q ss_pred HHHHHHHHHHHhcCccccCC-ccccCChhhHHHHHHHHHHHHHcCCEEE
Q 001289 263 YGGTILRQQRRLGASLDWSR-ECFTMDEKRSKAVTEAFVRLYKEGLIYR 310 (1107)
Q Consensus 263 ~~~~i~~ql~~lG~s~DW~r-~~~T~d~~~~~~v~~~F~~L~~~GlIyr 310 (1107)
+.+.|.++|+.||+ ||+. .++.+ ++.....++..+|.++|+.|.
T Consensus 52 ~~~~i~~dL~wLGl--~wde~~~~QS--~r~~~y~~~~~~Li~~G~AY~ 96 (492)
T 2cfo_A 52 YTENILEGLQWLGL--TWDEGPYFQS--DRLDLYRQAIQTLLDKGLAYY 96 (492)
T ss_dssp HHHHHHHHHHHTTC--CCSEEEEEGG--GCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCC--CCCCCCcccc--CCHHHHHHHHHHHHHCCCceE
Confidence 66899999999995 6665 34432 445567778889999999997
No 34
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=98.53 E-value=1.3e-06 Score=103.51 Aligned_cols=91 Identities=24% Similarity=0.359 Sum_probs=67.7
Q ss_pred CCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHH
Q 001289 183 PPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDE 262 (1107)
Q Consensus 183 PPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~ 262 (1107)
+|.|||.|||||+++..+.-.++|- ..|.-++.+==+|.. |. ..+
T Consensus 12 APsPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRieDtD~~-------------------R~--------------~~~ 56 (498)
T 2ja2_A 12 CPSPTGTPHVGLVRTALFNWAYARH--TGGTFVFRIEDTDAQ-------------------RD--------------SEE 56 (498)
T ss_dssp CCCSSSSCBHHHHHHHHHHHHHHHH--HTCEEEECBCCCCTT-------------------TC--------------CHH
T ss_pred CcCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEECcCCCc-------------------cc--------------ChH
Confidence 6999999999999999999999985 457666655555431 11 234
Q ss_pred HHHHHHHHHHHhcCccccCC---------ccccCChhhHHHHHHHHHHHHHcCCEEEee
Q 001289 263 YGGTILRQQRRLGASLDWSR---------ECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1107)
Q Consensus 263 ~~~~i~~ql~~lG~s~DW~r---------~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 312 (1107)
+.+.|.++|+.||+ ||+. .|+.+ ++...-+++..+|.++|++|...
T Consensus 57 ~~~~I~~~L~wlGl--~wDegp~~gG~~~~~~QS--~r~~~y~~~~~~L~~~g~aY~c~ 111 (498)
T 2ja2_A 57 SYLALLDALRWLGL--DWDEGPEVGGPYGPYRQS--QRAEIYRDVLARLLAAGEAYHAF 111 (498)
T ss_dssp HHHHHHHHHHHHTC--CCSBBTTTBCTTCCCBGG--GCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHcCC--CcCCCcCcCCCCCCeeee--cCHHHHHHHHHHHHHcCCeEEeC
Confidence 56789999999995 5656 34443 34556778889999999999764
No 35
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=97.81 E-value=1.3e-05 Score=89.30 Aligned_cols=91 Identities=27% Similarity=0.374 Sum_probs=62.1
Q ss_pred CCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHH
Q 001289 183 PPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDE 262 (1107)
Q Consensus 183 PPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~ 262 (1107)
+|.|||.||||||++.++...++|-+ .|.-++.+-=+|. + |. ..+
T Consensus 11 APsPtG~LHiG~~rtal~n~l~Ar~~--~g~~ilRieDtD~---~----------------R~--------------~~~ 55 (298)
T 1nzj_A 11 APSPSGELHFGSLIAALGSYLQARAR--QGRWLVRIEDIDP---P----------------RE--------------VPG 55 (298)
T ss_dssp CCCTTSCCCHHHHHHHHHHHHHHHHT--TCEEEEEECCSCG---G----------------GS--------------CTT
T ss_pred CcCCCCCccHHHHHHHHHHHHHHHhc--CCeEEEEEecCCc---h----------------hh--------------HHH
Confidence 79999999999999998655555532 3443433433332 0 00 134
Q ss_pred HHHHHHHHHHHhcCccccCC-ccccCChhhHHHHHHHHHHHHHcCCEEEee
Q 001289 263 YGGTILRQQRRLGASLDWSR-ECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1107)
Q Consensus 263 ~~~~i~~ql~~lG~s~DW~r-~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 312 (1107)
+.+.|.++|+.||+. |+. .++.+ ++.....++..+|.++|++|...
T Consensus 56 ~~~~I~~dL~~LGl~--~D~~~~~qS--er~~~y~~~~~~L~~~G~aY~c~ 102 (298)
T 1nzj_A 56 AAETILRQLEHYGLH--WDGDVLWQS--QRHDAYREALAWLHEQGLSYYCT 102 (298)
T ss_dssp HHHHHHHHHHHTTCC--CSSCCEEGG--GCHHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHHcCCC--CCCCCeeee--CCHHHHHHHHHHHHHcCCcccCc
Confidence 567899999999965 445 33333 35577888999999999999643
No 36
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=97.78 E-value=3.5e-05 Score=91.43 Aligned_cols=97 Identities=30% Similarity=0.353 Sum_probs=72.4
Q ss_pred cEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHH
Q 001289 176 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSE 255 (1107)
Q Consensus 176 ~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~ 255 (1107)
.++++--+|+|||.||||||++.++.|.++|. ..|+-++-+--+|. .|.
T Consensus 12 ~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G~~iLRieDtD~-------------------~r~---------- 60 (481)
T 2o5r_A 12 HMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKGKFILRIEDTDL-------------------ERS---------- 60 (481)
T ss_dssp -CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCSSC-------------------CSG----------
T ss_pred eEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCCeEEEEEecCCc-------------------ccc----------
Confidence 46677778999999999999999999999998 67888877554442 111
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccCC---------ccccCChhhHHHHHHHHHHHHHcCCEEEe
Q 001289 256 VWKWKDEYGGTILRQQRRLGASLDWSR---------ECFTMDEKRSKAVTEAFVRLYKEGLIYRD 311 (1107)
Q Consensus 256 ~~~w~~~~~~~i~~ql~~lG~s~DW~r---------~~~T~d~~~~~~v~~~F~~L~~~GlIyr~ 311 (1107)
..++.+.|.+.|+.||+. |+. +|+. .++.....++..+|.++|..|..
T Consensus 61 ----~~~~~~~I~~~l~wlGl~--~de~p~~gg~~g~y~Q--S~r~~~y~~~a~~L~~~G~aY~c 117 (481)
T 2o5r_A 61 ----EREYEEKLMESLRWLGLL--WDEGPDVGGDHGPYRQ--SERVEIYREHAERLVKEGKAYYV 117 (481)
T ss_dssp ----GGHHHHHHHHHHHHHTCC--CSBBTTTBCTTCCCBG--GGGHHHHHHHHHHHHHTTSEEEE
T ss_pred ----HHHHHHHHHHHHHHcCCC--CCCCcccCCCCCceee--eccHHHHHHHHHHHHHCCCeeEe
Confidence 234567889999999964 554 2332 24556677888999999999854
No 37
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=97.69 E-value=7.6e-05 Score=90.49 Aligned_cols=97 Identities=25% Similarity=0.304 Sum_probs=71.2
Q ss_pred cEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHH
Q 001289 176 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSE 255 (1107)
Q Consensus 176 ~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~ 255 (1107)
++.+=.+ |+|||.||||||++.++.+.++|. ..|.-++.+==+|. .|.
T Consensus 129 ~v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~--~~G~~ilRieDtD~-------------------~r~---------- 176 (592)
T 3al0_C 129 LVRVRFA-PSPTGHLHVGGARTALFNWMFARK--EGGKFILRIEDTDT-------------------ERS---------- 176 (592)
T ss_dssp CCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCCCS-------------------SSC----------
T ss_pred eEEEEEC-CCCCCCccHHHHHHHHHHHHHHHh--cCCcEEEEecCcCh-------------------hhc----------
Confidence 4444455 999999999999999999999996 45766666644441 111
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccCCc---------cccCChhhHHHHHHHHHHHHHcCCEEEee
Q 001289 256 VWKWKDEYGGTILRQQRRLGASLDWSRE---------CFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1107)
Q Consensus 256 ~~~w~~~~~~~i~~ql~~lG~s~DW~r~---------~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 312 (1107)
..++.+.|.++|+.||+. |+.. |+.+ ++.....++..+|.++|++|...
T Consensus 177 ----~~~~~~~I~~dL~wlGl~--~D~~~~~gG~~gp~~qS--er~~~y~~~~~~L~~~G~aY~c~ 234 (592)
T 3al0_C 177 ----SREYEQQILESLRWCGLD--WDEGPDIGGDFGPYRQS--ERLEIYREYAEKLVEDKRAYYVV 234 (592)
T ss_dssp ----CHHHHHHHHHHHHHTTCC--CSBBTTTBCTTCCCBST--TCHHHHHHHHHHHHHTTTEEEEE
T ss_pred ----cHHHHHHHHHHHHHcCCC--CCCCCCcCCCCCCeeee--CCHHHHHHHHHHHHHcCCceEec
Confidence 234567899999999964 6563 4443 33467888999999999999864
No 38
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=97.58 E-value=9.7e-05 Score=87.27 Aligned_cols=93 Identities=24% Similarity=0.343 Sum_probs=70.5
Q ss_pred CCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHH
Q 001289 181 LPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWK 260 (1107)
Q Consensus 181 ~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~ 260 (1107)
==+|.|||.|||||+++.+....++|. ..|.-++-+--+|.. |. .
T Consensus 29 RFAPSPTG~lHiG~~rtal~n~l~Ar~--~~G~filRieDtD~~-------------------R~--------------~ 73 (490)
T 4g6z_A 29 RFAPSPTGFIHLGNIRSALYPWAFARK--MKGTFVLRIEDTDVE-------------------RS--------------S 73 (490)
T ss_dssp EECCCCCSCCBHHHHHHHHHHHHHHHH--TTCEEEEEECCCCGG-------------------GC--------------C
T ss_pred EeCCCCCCCccHHHHHHHHHHHHHHHh--cCCeEEEEeCCCCcc-------------------cc--------------c
Confidence 336999999999999999999999885 467777766666641 00 2
Q ss_pred HHHHHHHHHHHHHhcCccccCCc-cccCChhhHHHHHHHHHHHHHcCCEEEee
Q 001289 261 DEYGGTILRQQRRLGASLDWSRE-CFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1107)
Q Consensus 261 ~~~~~~i~~ql~~lG~s~DW~r~-~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 312 (1107)
.+|.+.|.++|+.||+ +|+.. |+. ..+.....++..+|.++|++|...
T Consensus 74 ~~~~~~i~~dl~wlGl--~~d~~~~~q--S~r~~~y~~~~~~Li~~G~aY~C~ 122 (490)
T 4g6z_A 74 QEAVDAILEGMAWLGL--DYDEGPYYQ--MQRMDRYREVLAQMQEKGLVYPCY 122 (490)
T ss_dssp HHHHHHHHHHHHHTTC--CCSEEEEEG--GGCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHHHcCC--CCCCCCccc--ccCHHHHHHHHHHHHHCCCEEeCC
Confidence 4567899999999996 56553 333 346667788899999999999764
No 39
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=97.55 E-value=0.00018 Score=85.77 Aligned_cols=95 Identities=23% Similarity=0.289 Sum_probs=66.4
Q ss_pred EEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHH
Q 001289 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1107)
Q Consensus 178 ~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~ 257 (1107)
+++==+|.|||.||||||++.++...++| ...|.-++-+-=+|.. |
T Consensus 27 v~tRFaPSPtG~LHIGhaRtal~n~l~Ar--~~gG~fiLRieDTD~~-------------------R------------- 72 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQ--DYKGQCNLRFDDTNPV-------------------K------------- 72 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHH--HTTCEEEEEECCCCGG-------------------G-------------
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECCCCch-------------------h-------------
Confidence 34444799999999999999999888887 3456656555555531 0
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEE
Q 001289 258 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYR 310 (1107)
Q Consensus 258 ~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr 310 (1107)
-..+|.+.|.++|+.||+..| +..++.+ +|.....+.-.+|.++|+.|.
T Consensus 73 -~~~e~~~~I~edL~wLGl~wd-e~~~~qS--er~~~~~~~a~~Li~~G~AY~ 121 (553)
T 1qtq_A 73 -EDIEYVESIKNDVEWLGFHWS-GNVRYSS--DYFDQLHAYAIELINKGLAYV 121 (553)
T ss_dssp -CCHHHHHHHHHHHHHTTCCCS-SSCEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred -cCHHHHHHHHHHHHHcCCCCC-CCCeehc--ccHHHHHHHHHHHHHCCCcee
Confidence 124567899999999996444 2344443 344444455579999999997
No 40
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=97.42 E-value=0.00027 Score=87.87 Aligned_cols=95 Identities=19% Similarity=0.279 Sum_probs=67.8
Q ss_pred EEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHH
Q 001289 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1107)
Q Consensus 178 ~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~ 257 (1107)
+++==+|.|||.||||||++.++...++|- ..|.-++-+-=+|.. |.
T Consensus 67 v~tRFaPSPtG~LHIGhARtAL~n~l~Ar~--~gG~fiLRIEDTD~~-------------------R~------------ 113 (851)
T 2hz7_A 67 VVTRFPPDPSGYAHLGHVFASLLDFNTARQ--YGGQFNLRMDDTNPE-------------------LA------------ 113 (851)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHHH--TTCEEEEEECCCCTT-------------------TC------------
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEECcCCcc-------------------cc------------
Confidence 344447999999999999999998877773 355555554444431 11
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCCccccCChhhHHHHHHHHHHHHHcCCEEE
Q 001289 258 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYR 310 (1107)
Q Consensus 258 ~w~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr 310 (1107)
..+|.+.|.++|+.||+..| +..++. .+|.....++..+|.++|+.|.
T Consensus 114 --~~e~~~~IledL~wLGl~wd-e~~~~q--Ser~d~y~e~a~~LI~~G~AY~ 161 (851)
T 2hz7_A 114 --RQEYVDSIADDLKWLGLDWG-EHFYYA--SDYFDRYYAYAEQLIRQGDAYV 161 (851)
T ss_dssp --CHHHHHHHHHHHHHHTCCCT-TCEEEG--GGGHHHHHHHHHHHHHTTSEEE
T ss_pred --cHHHHHHHHHHHHHcCCCCC-CCcccH--hhhHHHHHHHHHHHHHCCCcEe
Confidence 34677899999999995443 234443 3566777888899999999997
No 41
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=97.29 E-value=0.00053 Score=82.10 Aligned_cols=95 Identities=22% Similarity=0.242 Sum_probs=65.4
Q ss_pred CCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHH
Q 001289 183 PPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDE 262 (1107)
Q Consensus 183 PPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~ 262 (1107)
+|.|||.||||||++.++.-.++|- ..|.-+|.+==+|. +|. +.+
T Consensus 30 APsPtG~LHiG~artAl~n~~~Ar~--~~G~fiLRieDtD~-------------------~R~--------------~~~ 74 (512)
T 4gri_A 30 APSPTGLQHIGGIRTALFNYFFAKS--CGGKFLLRIEDTDQ-------------------SRY--------------SPE 74 (512)
T ss_dssp CCCSSSCCBHHHHHHHHHHHHHHHH--TTCEEEECBCCCCT-------------------TSC--------------CHH
T ss_pred CcCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCCC-------------------CcC--------------CHH
Confidence 7999999999999999999999875 46766655544443 111 235
Q ss_pred HHHHHHHHHHHhcCccccCC----cccc-CChhhHHHHHHHHHHHHHcCCEEEee
Q 001289 263 YGGTILRQQRRLGASLDWSR----ECFT-MDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1107)
Q Consensus 263 ~~~~i~~ql~~lG~s~DW~r----~~~T-~d~~~~~~v~~~F~~L~~~GlIyr~~ 312 (1107)
+.+.|.++|+.||+..|-.- .|.. .-..+...-+++..+|.++|++|...
T Consensus 75 ~~~~I~~~L~wlGl~wDe~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~C~ 129 (512)
T 4gri_A 75 AENDLYSSLKWLGISFDEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYYCY 129 (512)
T ss_dssp HHHHHHHHHHHHTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHcCCCCCcCCccCCCCCCccccchHHHHHHHHHHHHHcCCccccc
Confidence 66789999999996555211 1111 11233455567888999999999764
No 42
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=97.25 E-value=0.00062 Score=80.72 Aligned_cols=95 Identities=27% Similarity=0.311 Sum_probs=69.8
Q ss_pred EECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHH
Q 001289 179 IVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWK 258 (1107)
Q Consensus 179 i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~ 258 (1107)
++==+|.|||.||||||++.+..-.++|- ..|.-++.+==+|.. |.
T Consensus 27 ~~RFAPsPtG~LHiG~~rtal~n~l~Ar~--~~G~filRieDtD~~-------------------R~------------- 72 (488)
T 3afh_A 27 RVRFAPSPTGHLHVGGARTALFNWMFARK--EGGKFILRIEDTDTE-------------------RS------------- 72 (488)
T ss_dssp EEEECCCCSSSCBHHHHHHHHHHHHHHHH--HTCEEEECBCCCCTT-------------------TC-------------
T ss_pred eEEECCCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEEeeCCcc-------------------cc-------------
Confidence 34447999999999999999998888875 356666665555541 11
Q ss_pred HHHHHHHHHHHHHHHhcCccccCCc---------cccCChhhHHHHHHHHHHHHHcCCEEEee
Q 001289 259 WKDEYGGTILRQQRRLGASLDWSRE---------CFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1107)
Q Consensus 259 w~~~~~~~i~~ql~~lG~s~DW~r~---------~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 312 (1107)
..++.+.|.++|+.||+ ||+.. |+.+ ++.....++..+|.++|++|...
T Consensus 73 -~~~~~~~I~~dL~wlGl--~wDe~~~~gG~~gp~~QS--er~~~y~~~~~~L~~~G~aY~c~ 130 (488)
T 3afh_A 73 -SREYEQQILESLRWCGL--DWDEGPDIGGDFGPYRQS--ERLEIYREYAEKLVEDKRAYYVV 130 (488)
T ss_dssp -CHHHHHHHHHHHHHTTC--CCSBBTTTBCTTCCCBGG--GCHHHHHHHHHHHHHTTSEEEEE
T ss_pred -cHHHHHHHHHHHHHcCC--CCCcCCCCCCCCCCeeee--CCHHHHHHHHHHHHHcCCeEecC
Confidence 23456789999999996 56663 4443 34467888999999999999864
No 43
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=97.25 E-value=0.00041 Score=81.87 Aligned_cols=91 Identities=23% Similarity=0.276 Sum_probs=67.1
Q ss_pred CCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHH
Q 001289 183 PPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDE 262 (1107)
Q Consensus 183 PPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~ 262 (1107)
+|.|||.||||||++..+.-.++|- ..|.-++.+==+|.. |. ..+
T Consensus 7 aPsPtG~LHiG~~rtal~n~l~Ar~--~~G~filRieDtD~~-------------------R~--------------~~~ 51 (468)
T 1j09_A 7 APSPTGDPHVGTAYIALFNYAWARR--NGGRFIVRIEDTDRA-------------------RY--------------VPG 51 (468)
T ss_dssp CCCCSSSCBHHHHHHHHHHHHHHHH--TTCEEEECBCCCCTT-------------------SC--------------CTT
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCCCc-------------------cc--------------ChH
Confidence 7999999999999999999998884 456655555555531 11 134
Q ss_pred HHHHHHHHHHHhcCccccCCc---------cccCChhhHHHHHHHHHHHHHcCCEEEee
Q 001289 263 YGGTILRQQRRLGASLDWSRE---------CFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1107)
Q Consensus 263 ~~~~i~~ql~~lG~s~DW~r~---------~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 312 (1107)
+.+.|.++|+.||+ ||+.. |+. .++...-.++..+|.++|++|...
T Consensus 52 ~~~~I~~dl~wlGl--~wd~~~~~gG~~gp~~Q--S~r~~~y~~~~~~L~~~G~aY~c~ 106 (468)
T 1j09_A 52 AEERILAALKWLGL--SYDEGPDVGGPHGPYRQ--SERLPLYQKYAEELLKRGWAYRAF 106 (468)
T ss_dssp HHHHHHHHHHHTTC--CCSBBTTTBCTTCCCBG--GGCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHHcCC--CCCCCCCCCCCCCCeec--cCCHHHHHHHHHHHHHcCCeEEcC
Confidence 56789999999995 56665 343 344556778889999999999764
No 44
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=97.16 E-value=0.00053 Score=77.41 Aligned_cols=59 Identities=27% Similarity=0.318 Sum_probs=41.8
Q ss_pred hCCcCcccccccccchH-HHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCccc
Q 001289 653 FYPTSVLETGHDILFFW-VARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLE 715 (1107)
Q Consensus 653 ~yP~dl~~tG~Dil~fW-~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~d 715 (1107)
.|.+++...|.||.... .+|-++ -.+....| .++.|+++.+.+|+|||||.||+|++.|
T Consensus 168 ~~~~~~v~~G~DQ~~~~~l~rdla--~~~~~~~p--~~l~~pll~~l~G~KMSKS~~n~I~l~d 227 (323)
T 2cyb_A 168 HLGVDLAVGGIDQRKIHMLARENL--PRLGYSSP--VCLHTPILVGLDGQKMSSSKGNYISVRD 227 (323)
T ss_dssp HTTCSEEEEEGGGHHHHHHHHHHG--GGGTCCCC--EEEEECCCBCTTSSBCCTTTTCSCBTTC
T ss_pred hcCCCEEEechhhHHHHHHHHHHH--HhcCCCCc--eEEecCcccCCCCCcccCCcCceeCCCC
Confidence 36788889999997521 222222 22333345 3778999999999999999999998764
No 45
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=94.81 E-value=0.025 Score=64.16 Aligned_cols=71 Identities=25% Similarity=0.364 Sum_probs=46.6
Q ss_pred CCcCcccccccccch-HHHHHHHHHHHh-cC---CCCccEEEE-cceeeCCCCccccccCCCccCccccccccCchhHHH
Q 001289 654 YPTSVLETGHDILFF-WVARMVMLGIKL-GG---EVPFTKVYL-HPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHK 727 (1107)
Q Consensus 654 yP~dl~~tG~Dil~f-W~armi~~~~~l-~g---~~PFk~V~~-Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~ 727 (1107)
|-+++...|.||... =.+|-++--+.. .| ..| ..++. +.++.+.+|+|||||.||.|+..| +-+.+.+
T Consensus 152 ~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P-~~~~~~~~~l~gldG~KMSKS~~n~I~L~d-----sp~~i~~ 225 (340)
T 2g36_A 152 YKAEGVPVGEDQVYHIELTREIARRFNYLYDEVFPEP-EAILSRVPKLPGTDGRKMSKSYGNIINLEI-----SEKELEQ 225 (340)
T ss_dssp TTCSEEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCC-EEEECCSCCCCCTTSSCCCGGGTCCCBTTC-----CHHHHHH
T ss_pred hCCCEEEcccchHHHHHHHHHHHHHhhhhcccccCCc-hhhhccccccCCCCccccCCCCCCeEeeeC-----CHHHHHH
Confidence 567888889999753 344544433321 24 345 34444 689999999999999999987766 3344444
Q ss_pred Hhh
Q 001289 728 RLE 730 (1107)
Q Consensus 728 ~l~ 730 (1107)
++.
T Consensus 226 Ki~ 228 (340)
T 2g36_A 226 TIL 228 (340)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 46
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=94.72 E-value=0.018 Score=64.74 Aligned_cols=61 Identities=28% Similarity=0.384 Sum_probs=41.5
Q ss_pred CCcCcccccccccch-HHHHHHHHHHHh-cC---CCCccEEE--EcceeeCCCCccccccCCCccCccc
Q 001289 654 YPTSVLETGHDILFF-WVARMVMLGIKL-GG---EVPFTKVY--LHPMIRDAHGRKMSKSLGNVIDPLE 715 (1107)
Q Consensus 654 yP~dl~~tG~Dil~f-W~armi~~~~~l-~g---~~PFk~V~--~Hg~v~D~~G~KMSKSlGNvIdP~d 715 (1107)
|-+++...|.||... =.+|-++--+.. .| ..| ..++ .+.++.+.+|+|||||.||.|+..|
T Consensus 138 ~~~~~vpvG~DQ~~hi~l~Rdia~r~n~~~g~~f~~P-~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d 205 (322)
T 3tzl_A 138 FDTRIVPVGKDQIQHVEIARDIALKVNNEWGEIFTLP-EARVNEEVAVVVGTDGAKMSKSYQNTIDIFS 205 (322)
T ss_dssp TTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCSCCC-EEECCCSSCCCBCTTSSBCCGGGTCCCBSSC
T ss_pred hCCcEEEeccchHHHHHHHHHHHHHhcccccCCCCCc-hhhhccccccccCCCCCcCCCCCCCceecCC
Confidence 557888889999753 344555433221 12 234 4555 3789999999999999999887654
No 47
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=94.62 E-value=0.027 Score=65.76 Aligned_cols=57 Identities=37% Similarity=0.477 Sum_probs=40.5
Q ss_pred CcCcccccccccchHH-HHHHHHHHHhcCCCCccEEEEcceeeCCCCc-cccccCCCccCccc
Q 001289 655 PTSVLETGHDILFFWV-ARMVMLGIKLGGEVPFTKVYLHPMIRDAHGR-KMSKSLGNVIDPLE 715 (1107)
Q Consensus 655 P~dl~~tG~Dil~fW~-armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~-KMSKSlGNvIdP~d 715 (1107)
.+++...|.||..... .|-++- .+ |..| .-++.+.++...+|. |||||.||.|+..|
T Consensus 187 ~~~l~~gG~DQ~~ni~l~rdlar--r~-~~~~-~~~lt~pll~gldG~~KMSKS~~n~I~L~d 245 (432)
T 1h3f_A 187 RADVEMGGTDQRFNLLVGREVQR--AY-GQSP-QVCFLMPLLVGLDGREKMSKSLDNYIGLTE 245 (432)
T ss_dssp TCSEEEEEGGGHHHHHHHHHHHH--HT-TCCC-CEEEEECCCBCTTSSSBCCGGGTCCCBTTS
T ss_pred CccEEEechHHHHHHHHHHHHHH--Hh-CCCC-ceEeecccccCCCCccccCcCCCCeeCCCC
Confidence 4788889999964322 233322 22 3334 457789999999996 99999999998776
No 48
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=94.62 E-value=0.025 Score=63.38 Aligned_cols=54 Identities=26% Similarity=0.219 Sum_probs=38.4
Q ss_pred CcCcccccccccchH-HHHHHHHHHHhcCCCCccEEEEcceeeCCCC-ccccccCCCccCcccc
Q 001289 655 PTSVLETGHDILFFW-VARMVMLGIKLGGEVPFTKVYLHPMIRDAHG-RKMSKSLGNVIDPLEV 716 (1107)
Q Consensus 655 P~dl~~tG~Dil~fW-~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G-~KMSKSlGNvIdP~dv 716 (1107)
-+++...|.||.... ++|- +....| -++.+.++.+.+| +|||||.||.|+..|=
T Consensus 163 ~~~~v~~G~DQ~~~~~l~R~------i~~~~~--~~~~~~~l~~l~G~~KMSKS~~~~I~L~d~ 218 (314)
T 2zp1_A 163 GVDVAVGGMEQRKIHMLARE------LLPKKV--VCIHNPVLTGLDGEGKMSSSKGNFIAVDDS 218 (314)
T ss_dssp TCSEEEEEGGGHHHHHHHHH------HSSSCC--EEEEECCCBCTTSSSBCCTTTTCSCBTTCC
T ss_pred CCCEEEcChhHHHHHHHHHH------hcCCCc--EEeeccccccCCcccccCCCCcceecCCCC
Confidence 467778899997633 2222 223334 4577899999999 7999999999987654
No 49
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=94.18 E-value=0.024 Score=63.80 Aligned_cols=57 Identities=18% Similarity=0.020 Sum_probs=41.2
Q ss_pred CcCcccccccccchH-HHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCccc
Q 001289 655 PTSVLETGHDILFFW-VARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLE 715 (1107)
Q Consensus 655 P~dl~~tG~Dil~fW-~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~d 715 (1107)
++++.+.|.||.... .+|-++-- +.+..| -.+.+.++...+|+|||||.||.|+..|
T Consensus 191 ~~~v~~gG~DQ~~~i~l~rdla~r--~n~~~~--~~l~~pll~gldG~KMSKS~~n~I~L~d 248 (322)
T 2yxn_A 191 GVVLCIGGSDQWGNITSGIDLTRR--LHQNQV--FGLTVPLITKADGTKFGKTEGGAVWLDP 248 (322)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHH--HHCCCC--EEEECCCCBCTTSCBTTEETTEECBSST
T ss_pred CceEEecCchhHHHHHHHHHHHHH--hCCCCc--eeeccCccCCCCcccccCCCCCeeeccC
Confidence 788888899997542 33434322 223334 4568899998899999999999998877
No 50
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=94.11 E-value=0.031 Score=65.08 Aligned_cols=59 Identities=15% Similarity=0.105 Sum_probs=42.5
Q ss_pred CCcCcccccccccchHH-HHHHHHHHHh-cCCCCccEEEEcceeeCCCCccccccCCCccCcccc
Q 001289 654 YPTSVLETGHDILFFWV-ARMVMLGIKL-GGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEV 716 (1107)
Q Consensus 654 yP~dl~~tG~Dil~fW~-armi~~~~~l-~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dv 716 (1107)
|.+++...|.||..... .|-++- .+ .+..| -.+.+.++...+|+|||||.||.|+..|-
T Consensus 185 ~~~~i~~gG~DQ~~ni~~grdla~--r~~~~~~~--~~l~~pll~~ldG~KMSKS~~naI~L~d~ 245 (420)
T 1jil_A 185 LNCKIQVGGSDQWGNITSGIELMR--RMYGQTDA--YGLTIPLVTKSDGKKFGKSESGAVWLDAE 245 (420)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHHH--HHHCCCCC--EEEEECCCBCTTSCBTTBCSSSBCBSSTT
T ss_pred CCCcEEeccHHHHHHHHHHHHHHH--HhcCCCCe--eEeecccccCCccccccCCCCCeEecCCC
Confidence 47888889999965432 233332 22 33333 56779999999999999999999987764
No 51
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=94.01 E-value=0.028 Score=65.32 Aligned_cols=60 Identities=17% Similarity=0.038 Sum_probs=41.6
Q ss_pred CCcCcccccccccchHH-HHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCcccc
Q 001289 654 YPTSVLETGHDILFFWV-ARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEV 716 (1107)
Q Consensus 654 yP~dl~~tG~Dil~fW~-armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dv 716 (1107)
|.+++...|.||..... .|-++--+. .+..| -++.+.++...+|+|||||.||.|+..|-
T Consensus 184 ~~~~i~~gG~DQ~~ni~lgrdlarr~~-~~~~~--~~lt~pll~~ldG~KMSKS~~naI~L~d~ 244 (419)
T 2ts1_A 184 EGCRLQIGGSDQWGNITAGLELIRKTK-GEARA--FGLTIPLVTKADGTKFGKTESGTIWLDKE 244 (419)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHHHHHH-C--CC--EEEEECCCCCTTSCCTTCCSSCCCBSSTT
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHhc-CCCCe--eecccccccCCCcccccCCCCCeEecCCC
Confidence 37888889999965432 233332220 23333 56778999999999999999999987764
No 52
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=93.98 E-value=0.026 Score=64.33 Aligned_cols=58 Identities=28% Similarity=0.158 Sum_probs=29.5
Q ss_pred CcCcccccccccchH-HHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCcccc
Q 001289 655 PTSVLETGHDILFFW-VARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEV 716 (1107)
Q Consensus 655 P~dl~~tG~Dil~fW-~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dv 716 (1107)
.+++...|.||.... .+|-++- .+.+..| -++.+.++...+|+|||||.||.|+..|-
T Consensus 210 ~~~i~p~G~DQ~~~i~l~rdla~--r~n~~~~--~~l~~pll~~ldG~KMSKS~~naI~L~d~ 268 (356)
T 2pid_A 210 GCRVQLGGSDQLGNIMSGYEFIN--KLTGEDV--FGITVPLITSTTGAKLGKSAGNAVWLNRD 268 (356)
T ss_dssp CCCEEEEEGGGHHHHHHHHHHHH--HHSSCCC--EEEEECCCC-------------CCBSSTT
T ss_pred CCcEEeccHHHHHHHHHHHHHHH--HhCCCCc--cccccccccCCCcccccCCCCCeeeccCC
Confidence 788888999997542 2333332 2333334 46778999999999999999999988774
No 53
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=93.86 E-value=0.034 Score=64.82 Aligned_cols=59 Identities=17% Similarity=0.079 Sum_probs=42.1
Q ss_pred CCcCcccccccccchH-HHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCC-ccCcccc
Q 001289 654 YPTSVLETGHDILFFW-VARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGN-VIDPLEV 716 (1107)
Q Consensus 654 yP~dl~~tG~Dil~fW-~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGN-vIdP~dv 716 (1107)
|.+++...|.||.... ..|-++- .+.+..| -.+.+.++...+|+|||||.|| .|+..|-
T Consensus 186 ~~~~i~~gG~DQ~~ni~lgrdlar--r~~~~~~--~~l~~plL~~ldG~KMSKS~~nsaI~L~d~ 246 (432)
T 2jan_A 186 HGCTLQIGGADQWGNIIAGVRLVR--QKLGATV--HALTVPLVTAADGTKFGKSTGGGSLWLDPQ 246 (432)
T ss_dssp HCCCEEEECSTTHHHHHHHHHHHH--HHHCCCC--EEEECCCCBCTTSCBTTBCSSSCBCBSSTT
T ss_pred CCCcEEeccHHHHHHHHHHHHHHH--HhCCCCc--cccccccccCCCcCcCCCCCCCCeEEccCC
Confidence 3788899999996543 2333332 2233333 5677899999999999999999 8877663
No 54
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=93.70 E-value=0.029 Score=64.71 Aligned_cols=62 Identities=19% Similarity=0.154 Sum_probs=40.3
Q ss_pred CcCcccccccccchHH-HHHHHHHHHh-----------cCCCCc--cEEEEcceeeCCCCccccccCCCccCcccc
Q 001289 655 PTSVLETGHDILFFWV-ARMVMLGIKL-----------GGEVPF--TKVYLHPMIRDAHGRKMSKSLGNVIDPLEV 716 (1107)
Q Consensus 655 P~dl~~tG~Dil~fW~-armi~~~~~l-----------~g~~PF--k~V~~Hg~v~D~~G~KMSKSlGNvIdP~dv 716 (1107)
.+++...|.||..... .|-++--..- ..+.++ .-.+.+.++...+|+|||||.||.|+..|-
T Consensus 232 ~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d~ 307 (392)
T 1y42_X 232 GVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSGAKFGKSAGNAIWLDPY 307 (392)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTCCBTTBCSSSBCBSSTT
T ss_pred CccEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCchhhccCCCCCeeeccCC
Confidence 7888899999954322 2222211100 011111 346788999999999999999999987764
No 55
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=93.46 E-value=0.37 Score=43.72 Aligned_cols=60 Identities=17% Similarity=0.245 Sum_probs=49.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001289 1039 DIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENE 1099 (1107)
Q Consensus 1039 D~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~ 1099 (1107)
....|++.|.+++++++.++..++..|++|+|-.. +.+....-..++++++.++..+.+.
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~-d~~~~~~l~~~l~~~e~eLe~~~er 78 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQ-PHEQTQKVLADMAAAEQELEQAFER 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGS-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccC-CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688999999999999999999999999997654 4555666777788888888777766
No 56
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=93.22 E-value=0.06 Score=61.79 Aligned_cols=58 Identities=26% Similarity=0.257 Sum_probs=32.4
Q ss_pred CCcCcccccccccchHH-HHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCC-ccCccc
Q 001289 654 YPTSVLETGHDILFFWV-ARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGN-VIDPLE 715 (1107)
Q Consensus 654 yP~dl~~tG~Dil~fW~-armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGN-vIdP~d 715 (1107)
|-+++...|.||..... +|-++- .+....| ..+.++++.+.+|+|||||.|| .|+..|
T Consensus 177 ~~a~~v~~G~DQ~~~~~l~rdl~~--r~~~~~p--~~l~~pll~gldG~KMSKS~~ns~I~L~d 236 (372)
T 1n3l_A 177 LKVDAQFGGIDQRKIFTFAEKYLP--ALGYSKR--VHLMNPMVPGLTGSKMSSSEEESKIDLLD 236 (372)
T ss_dssp TTCSEEEEEGGGHHHHHHHHHHGG--GGTCCCC--EEEEECCCCCSSCC-------CCSCBTTC
T ss_pred hcCCEEEcChhHHHHHHHHHHHHH--HcCCCCC--EEEecCccCCCCcccccCCCCCCeEeccC
Confidence 56678888999975432 233321 2222345 4667899999999999999999 676543
No 57
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=92.94 E-value=0.056 Score=62.47 Aligned_cols=58 Identities=29% Similarity=0.240 Sum_probs=31.2
Q ss_pred CCcCcccccccccch-HHHHHHHHHHHhcCCCCccEEEEcceeeCCC-CccccccCCCc-cCccc
Q 001289 654 YPTSVLETGHDILFF-WVARMVMLGIKLGGEVPFTKVYLHPMIRDAH-GRKMSKSLGNV-IDPLE 715 (1107)
Q Consensus 654 yP~dl~~tG~Dil~f-W~armi~~~~~l~g~~PFk~V~~Hg~v~D~~-G~KMSKSlGNv-IdP~d 715 (1107)
|.+++...|.||... -.+|.++ -.+....| ..+.|.++.+.+ |+|||||.||. |+..|
T Consensus 181 ~~~~~v~~G~DQ~~~~~l~rdl~--~r~~~~~p--~~l~~pll~gl~~G~KMSKS~~ns~I~L~D 241 (394)
T 2dlc_X 181 LDVDCQFGGVDQRKIFVLAEENL--PSLGYKKR--AHLMNPMVPGLAQGGKMSASDPNSKIDLLE 241 (394)
T ss_dssp TTCSEEEEEGGGHHHHHHHHHHG--GGGTCCCC--EEEEECCCCCCC----------CCSCBTTC
T ss_pred hCCCEEecCccHHHHHHHHHHHH--HHcCCCCC--EEEecccccCCCCCCcCCCCCCCCEEeccC
Confidence 667888889999753 2233333 22223344 566789999999 99999999996 76654
No 58
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=92.86 E-value=0.066 Score=60.91 Aligned_cols=62 Identities=27% Similarity=0.350 Sum_probs=41.2
Q ss_pred CCcCcccccccccch-HHHHHHHHHHH-hcC---CCCccEEEE-cceeeCCCCc-cccccCCCccCcccc
Q 001289 654 YPTSVLETGHDILFF-WVARMVMLGIK-LGG---EVPFTKVYL-HPMIRDAHGR-KMSKSLGNVIDPLEV 716 (1107)
Q Consensus 654 yP~dl~~tG~Dil~f-W~armi~~~~~-l~g---~~PFk~V~~-Hg~v~D~~G~-KMSKSlGNvIdP~dv 716 (1107)
|-+++...|.||... =.+|-++--+. ..| ..| .-++. +.++.+.+|+ |||||.||.|+..|=
T Consensus 161 ~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P-~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d~ 229 (351)
T 1yi8_B 161 FGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEP-QAQLSRVPRLPGLDGQAKMSKSLGNAIALGDS 229 (351)
T ss_dssp HTCSEEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCC-EEEECSSCSCCCTTSSSCCCTTTTCCCBTTCC
T ss_pred cCCCEEEecCCcHHHHHHHHHHHHHHHhhcccccCCC-eeeeecCccccCCCCccccCCCCCCeecCCCC
Confidence 557888889999753 33444443221 124 345 44554 6899999997 999999998766543
No 59
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=92.63 E-value=0.074 Score=60.15 Aligned_cols=60 Identities=35% Similarity=0.503 Sum_probs=40.0
Q ss_pred CCcCcccccccccch-HHHHHHHHHHH-hcC---CCCccEEEEc---ceeeCCCC-ccccccCCCccCccc
Q 001289 654 YPTSVLETGHDILFF-WVARMVMLGIK-LGG---EVPFTKVYLH---PMIRDAHG-RKMSKSLGNVIDPLE 715 (1107)
Q Consensus 654 yP~dl~~tG~Dil~f-W~armi~~~~~-l~g---~~PFk~V~~H---g~v~D~~G-~KMSKSlGNvIdP~d 715 (1107)
|-+++...|.||... =.+|-++--+. ..| ..| ..+++ .++.+.+| +|||||.||.|+..|
T Consensus 140 ~~~~lvp~G~DQ~~~i~l~rdla~r~n~~~g~~f~~P--~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d 208 (337)
T 2el7_A 140 YKADTVPVGEDQVQHIELTREIARRFNHLFGETFPEP--QALLNPEAPRVPGIDGKAKMSKSLGNTIGLLE 208 (337)
T ss_dssp TTCCEEECCGGGCHHHHHHHHHHHHHHHHHSSCCCCC--EEECCTTSCCCBCTTSSSBCCTTTTCCCBSSS
T ss_pred hCCcEEEcccchHHHHHHHHHHHHHHHhhcCcccCCC--eeecccccccccCCCCccccCCCCCCeeeCcC
Confidence 567888889999764 33344443221 123 345 34443 69999999 999999999887654
No 60
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=92.62 E-value=0.27 Score=58.23 Aligned_cols=58 Identities=21% Similarity=0.159 Sum_probs=38.7
Q ss_pred CcccccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCcccccc
Q 001289 657 SVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVIN 718 (1107)
Q Consensus 657 dl~~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~ 718 (1107)
+-.+-|.|.+ ....+.+.+.-.+....| ...-++++++.+|+||||+.||+ ...++.+
T Consensus 220 thvirG~D~~-~~t~~q~~l~~aLG~~~p--~~~H~plil~~~G~KLSKR~g~~-~l~~~~~ 277 (481)
T 2o5r_A 220 THVIRGDDHL-SNTLRQLALYEAFEKAPP--VFAHVSTILGPDGKKLSKRHGAT-SVEAFRD 277 (481)
T ss_dssp SEEEEEGGGH-HHHHHHHHHHHHTTCCCC--EEEEECCEECTTSSBCCGGGSCC-BHHHHHH
T ss_pred CeEEEChhHH-HhHHHHHHHHHHcCCCCC--eEEEEeeEECCCCCcccCcCCcc-cHHHHHH
Confidence 4445688865 455566555555544445 44445888999999999999998 4555544
No 61
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=91.20 E-value=0.16 Score=58.29 Aligned_cols=58 Identities=26% Similarity=0.149 Sum_probs=38.4
Q ss_pred CCcCcccccccccchH-HHHHHHHHHHhcCC-CCccEEEEcceeeCC-CCc-cccccC-CCccCccc
Q 001289 654 YPTSVLETGHDILFFW-VARMVMLGIKLGGE-VPFTKVYLHPMIRDA-HGR-KMSKSL-GNVIDPLE 715 (1107)
Q Consensus 654 yP~dl~~tG~Dil~fW-~armi~~~~~l~g~-~PFk~V~~Hg~v~D~-~G~-KMSKSl-GNvIdP~d 715 (1107)
|-+|+...|.||.... .+|-++--+. .. .| .++.|.+|.+. +|. |||||. ||.|+..|
T Consensus 199 l~ad~vpgG~DQ~~~l~l~Rdla~r~~--~~~~~--~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~D 261 (373)
T 3vgj_A 199 LNVDICQLGIDQRKVNMLAREYCDIKK--IKKKP--VILSHGMLPGLLEGQEKMSKSDENSAIFMDD 261 (373)
T ss_dssp TTCSEECCBGGGHHHHHHHHHHHHHHT--CSCCC--EEEEBCCCCCSSTTCCSCCSSSTTCCCBTTC
T ss_pred cCCcEEEcchhhHHHHHHHHHHHHHhC--CCCCc--eEEeCCeeecCCCCCCCCcCCCCCCeeecCC
Confidence 4567888899996543 4454443322 21 13 46788999985 895 999999 47886543
No 62
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=91.11 E-value=0.098 Score=62.50 Aligned_cols=73 Identities=12% Similarity=0.145 Sum_probs=46.1
Q ss_pred ccEEEEcceeeCCCCccccccCCCcc------CccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCc
Q 001289 686 FTKVYLHPMIRDAHGRKMSKSLGNVI------DPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGT 759 (1107)
Q Consensus 686 Fk~V~~Hg~v~D~~G~KMSKSlGNvI------dP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~Ga 759 (1107)
+-..+-+|++ +.+|.|||||+||.. +.=|=-.-.++.+|+.+ .|.+
T Consensus 252 ~P~~~~f~hL-n~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~r---------------------------Gy~P 303 (553)
T 1qtq_A 252 HPRQYEFSRL-NLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRR---------------------------GYTA 303 (553)
T ss_dssp CCEEEEECCC-CBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHH---------------------------TCCH
T ss_pred CCCeEEEEee-cCCCccccccccccccccCcccCCCCcchhhHHHHHHC---------------------------CCCH
Confidence 3466677877 589999999999732 10000011234444433 5889
Q ss_pred hHHHHHHHhccCccccccccHHHHHHH
Q 001289 760 DALRFALVSYTAQSDKINLDIQRVVGY 786 (1107)
Q Consensus 760 DaLRf~L~~~~~~~~Dinf~~~~v~~~ 786 (1107)
+|||.||+..+-...+..+++..++..
T Consensus 304 eAirnfl~~lG~s~~~~~~e~~~le~~ 330 (553)
T 1qtq_A 304 ASIREFCKRIGVTKQDNTIEMASLESC 330 (553)
T ss_dssp HHHHHHHHHHCCCSSCCCBCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCccccchhhHHHH
Confidence 999999987765545555677666553
No 63
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=90.36 E-value=0.39 Score=56.58 Aligned_cols=72 Identities=22% Similarity=0.190 Sum_probs=46.5
Q ss_pred cccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCChHHH
Q 001289 660 ETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKEL 739 (1107)
Q Consensus 660 ~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~ 739 (1107)
+-|.|.+- ...+++.+.-.+....| ...-++++++.+|+||||+.||. ...++.+ +
T Consensus 204 irG~D~~~-~t~~q~~l~~alg~~~p--~~~h~~li~~~~g~klSKR~g~~-~l~~~~~---------~----------- 259 (468)
T 1j09_A 204 IRAEEWLV-STPIHVLLYRAFGWEAP--RFYHMPLLRNPDKTKISKRKSHT-SLDWYKA---------E----------- 259 (468)
T ss_dssp EEEGGGGG-GHHHHHHHHHHHTCCCC--EEEEECCCBCTTSCBCCTTTSCC-BHHHHHH---------T-----------
T ss_pred EEChhhhh-hHHHHHHHHHHcCCCCC--eEEEeeeeeCCCCCccccccchh-hHHHHHH---------C-----------
Confidence 34777543 34444444444433445 44455899999999999999998 3333332 1
Q ss_pred HHHHhccCCCCCCCCCCCCchHHHHHHHhccC
Q 001289 740 EVAKKGQKADFPNGIPECGTDALRFALVSYTA 771 (1107)
Q Consensus 740 ~~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~ 771 (1107)
.|-++|+|-||+..+-
T Consensus 260 ----------------G~~peal~~~l~~lG~ 275 (468)
T 1j09_A 260 ----------------GFLPEALRNYLCLMGF 275 (468)
T ss_dssp ----------------TCCHHHHHHHHHHHSC
T ss_pred ----------------CCCHHHHHHHHHHhcc
Confidence 4678999999886543
No 64
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=90.15 E-value=0.14 Score=59.65 Aligned_cols=58 Identities=22% Similarity=0.129 Sum_probs=33.8
Q ss_pred CCcCcccccccccch-HHHHHHHHHHHhcCCCCccEEEEcceeeCCCC--ccccccCCC-ccCccc
Q 001289 654 YPTSVLETGHDILFF-WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHG--RKMSKSLGN-VIDPLE 715 (1107)
Q Consensus 654 yP~dl~~tG~Dil~f-W~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G--~KMSKSlGN-vIdP~d 715 (1107)
|-.++...|.||... =++|-++- .+....|+ ++.|.++...+| +|||||.|| .|+..|
T Consensus 248 ~~~~lvp~G~DQ~~~i~l~Rdla~--r~~~~~p~--~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d 309 (432)
T 2ip1_A 248 KTPCLIPCAIDQDPYFRVCRDVAD--KLKYSKPA--LLHSRFFPALQGSTTKMSASDDTTAIFMTD 309 (432)
T ss_dssp TCCEEEEEEGGGHHHHHHHHHHHH--HHTSCCCE--EEEECCCCCTTC--------CGGGCCBTTC
T ss_pred CCceEEEeccCcHHHHHHHHHHHH--HhCCCCce--eeccccccCCCCCccccCCCCCCCeEeccC
Confidence 335566679999754 33344432 22335563 578899999999 999999999 786654
No 65
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=90.08 E-value=0.19 Score=57.15 Aligned_cols=61 Identities=28% Similarity=0.227 Sum_probs=39.8
Q ss_pred CCcCcccccccccch-HHHHHHHHHHH-hcC---CCCccEEEE--cceeeCCCC--ccccccCCC---ccCccc
Q 001289 654 YPTSVLETGHDILFF-WVARMVMLGIK-LGG---EVPFTKVYL--HPMIRDAHG--RKMSKSLGN---VIDPLE 715 (1107)
Q Consensus 654 yP~dl~~tG~Dil~f-W~armi~~~~~-l~g---~~PFk~V~~--Hg~v~D~~G--~KMSKSlGN---vIdP~d 715 (1107)
|-+++...|.||... =++|-++--+. ..| ..| .-++. +.+|.+.+| +|||||.|| .|+..|
T Consensus 146 ~~a~~vpvG~DQ~~~lel~Rdia~r~n~~yg~~f~~P-~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D 218 (348)
T 2yy5_A 146 YQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLP-QFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDD 218 (348)
T ss_dssp TCCSEEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCC-EEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTC
T ss_pred hCccEEEecccHHHHHHHHHHHHHHhhhhcccccCCC-eeecccccccccCCCCcchhcCCCCCCCCceEeecC
Confidence 567888889999753 33444443221 123 234 33333 688998889 999999999 786654
No 66
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=89.72 E-value=0.13 Score=59.45 Aligned_cols=56 Identities=21% Similarity=0.227 Sum_probs=28.8
Q ss_pred cCcccccccccchH-HHHHHHHHHHhcCCCCccEEEEcceeeCCCC--ccccccCCCccCccc
Q 001289 656 TSVLETGHDILFFW-VARMVMLGIKLGGEVPFTKVYLHPMIRDAHG--RKMSKSLGNVIDPLE 715 (1107)
Q Consensus 656 ~dl~~tG~Dil~fW-~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G--~KMSKSlGNvIdP~d 715 (1107)
.++...|.||.... .+|-++-- +....| .++.+.++.+.+| .|||||.||.|+..|
T Consensus 225 ~~lvp~G~DQ~~~i~l~Rdla~r--~~~~~p--~~l~~~~l~gLdG~~~KMSKS~~~~I~L~D 283 (395)
T 3i05_A 225 FCLIPQAIDQDPYFRLTRDIAPR--LGYLKP--AVIHSKFFPGLSGPKGKMSSSSGTAVLLTD 283 (395)
T ss_dssp EEEEEEEGGGHHHHHHHHHTHHH--HTCCCC--EEEEECCCCCC-------------CCBTTC
T ss_pred ceEEEeccchHHHHHHHHHHHHH--cCCCCc--eeeccccccCCCCCcccCCCCCCCcccCCC
Confidence 45677799997543 34444432 334445 4677899999999 799999999997654
No 67
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=89.72 E-value=0.25 Score=56.46 Aligned_cols=59 Identities=27% Similarity=0.236 Sum_probs=38.6
Q ss_pred CCcCcccccccccch-HHHHHHHHHHHhcCCCCccEEEEcceeeCCC-----------------Ccccccc-CCCccCcc
Q 001289 654 YPTSVLETGHDILFF-WVARMVMLGIKLGGEVPFTKVYLHPMIRDAH-----------------GRKMSKS-LGNVIDPL 714 (1107)
Q Consensus 654 yP~dl~~tG~Dil~f-W~armi~~~~~l~g~~PFk~V~~Hg~v~D~~-----------------G~KMSKS-lGNvIdP~ 714 (1107)
|-+++...|.||... =++|-++ -.+....| .++.|.++.+.+ |+||||| .||.|+..
T Consensus 176 ~~~~~v~~G~DQ~~~~~l~rdla--~r~~~~~p--~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L~ 251 (364)
T 2cya_A 176 MDLDIALGGMDQRKAHMLARDVA--EKLGRKKP--VAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVV 251 (364)
T ss_dssp TTCSEEEEEGGGHHHHHHHHHHH--TTTTCCCC--EEEEECCCBCSSCC----------------CBCCSSSGGGSCBTT
T ss_pred cCCCEEeccchHHHHHHHHHHHH--HHcCCCCc--eeeccceeeCCCcccccccccccccccccccccCCCCCCCEeecc
Confidence 456788889999643 2223332 22223345 357789999888 7999999 78888765
Q ss_pred cc
Q 001289 715 EV 716 (1107)
Q Consensus 715 dv 716 (1107)
|-
T Consensus 252 d~ 253 (364)
T 2cya_A 252 DS 253 (364)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 68
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=89.70 E-value=0.2 Score=57.62 Aligned_cols=55 Identities=18% Similarity=0.134 Sum_probs=38.6
Q ss_pred CcccccccccchH-HHHHHHHHHHhcCCCCccEEEEcceeeCCCCc-ccccc-CCCccCccc
Q 001289 657 SVLETGHDILFFW-VARMVMLGIKLGGEVPFTKVYLHPMIRDAHGR-KMSKS-LGNVIDPLE 715 (1107)
Q Consensus 657 dl~~tG~Dil~fW-~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~-KMSKS-lGNvIdP~d 715 (1107)
++...|.||.+.. ++|-++-- +....| .++.|.++.+.+|. ||||| .||.|...|
T Consensus 226 ~~VpvG~DQ~~hl~l~Rdla~r--~n~~~p--~~l~~~~l~gLdG~~KMSKSd~~~~I~L~D 283 (386)
T 3hzr_A 226 CLVLDSIKNVQFHSIIDQIATT--LNFIQP--TVLFHKMVPLLSGVTKFDIPSDHNSILLSD 283 (386)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHH--HTCCCC--EEEEECCCCCTTCTTCCCCCCTTTSCBTTC
T ss_pred cccccccchHHHHHHHHHHHHH--cCCCCc--eEeecCeeeCCCCCCccCcCCCCCeeecCC
Confidence 3334499997643 45555543 333456 57788999999996 99999 899997654
No 69
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=89.64 E-value=0.47 Score=54.37 Aligned_cols=72 Identities=11% Similarity=0.165 Sum_probs=41.9
Q ss_pred CCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHH-HHH
Q 001289 185 NVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWK-DEY 263 (1107)
Q Consensus 185 yvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~-~~~ 263 (1107)
-|||.|||||.+..+ -.+.++++ .|+++.+..|=.| ++- ....|.+ .+.+.+++ .++
T Consensus 41 ~PTg~lHlG~yl~~l--~~~~~lQ~-~G~~~~~~iaD~h-a~~---------~~~~g~~---------~e~i~~~~~~~~ 98 (375)
T 2cyc_A 41 EISGYIHLGTGLMAG--AKIADFQK-AGIKTRVFLADWH-SWI---------NDKLGGD---------LEVIQEVALKYF 98 (375)
T ss_dssp CCCSCCBHHHHHHHH--HHHHHHHH-TTCBCEEEECHHH-HHH---------TTGGGGC---------HHHHHHHHHHTH
T ss_pred CCCCCcCchHHHHHH--HHHHHHHH-CCCcEEEEecCcE-EEc---------CCCCCCC---------HHHHHHHHHHHH
Confidence 358999999955432 23445555 4888887776433 221 0111222 23456666 666
Q ss_pred HHHHHHHHHHhcCcc
Q 001289 264 GGTILRQQRRLGASL 278 (1107)
Q Consensus 264 ~~~i~~ql~~lG~s~ 278 (1107)
...+..++..+|+..
T Consensus 99 ~~~~~~~~la~G~dp 113 (375)
T 2cyc_A 99 KVGMEKSIEVMGGDP 113 (375)
T ss_dssp HHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHhCCCc
Confidence 666667788888644
No 70
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=89.57 E-value=0.23 Score=55.90 Aligned_cols=61 Identities=26% Similarity=0.238 Sum_probs=39.0
Q ss_pred CCcCcccccccccch-HHHHHHHHHHH-hcC---CCCccEEEE--cceeeCCCC--ccccccCCC-c--cCccc
Q 001289 654 YPTSVLETGHDILFF-WVARMVMLGIK-LGG---EVPFTKVYL--HPMIRDAHG--RKMSKSLGN-V--IDPLE 715 (1107)
Q Consensus 654 yP~dl~~tG~Dil~f-W~armi~~~~~-l~g---~~PFk~V~~--Hg~v~D~~G--~KMSKSlGN-v--IdP~d 715 (1107)
|-+++...|.||... =.+|-++--+. ..| ..| .-++. +.++.+.+| +|||||.|| . |+..|
T Consensus 136 ~~~~~vpvG~DQ~~~iel~Rdia~r~n~~yg~~f~~P-~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d 208 (328)
T 1i6k_A 136 YNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIP-EARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLD 208 (328)
T ss_dssp TTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCCCCC-EEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTC
T ss_pred hCCCEEecccchHHHHHHHHHHHHHhCcccccccCCC-eeeeccccccccCCCCCccCCCCCCCCcCceeeecC
Confidence 567888889999753 33344432221 112 234 33442 688889999 999999999 6 76544
No 71
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=89.55 E-value=0.17 Score=64.15 Aligned_cols=79 Identities=28% Similarity=0.434 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHcCCeeceec--------------cccccceeccCCCeeEecccccccccccHHHHHHHHhhhccCCCc
Q 001289 475 KAREAVNEALKKKGLYRGAKD--------------NEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKK 540 (1107)
Q Consensus 475 ~ar~~vi~~L~~~gl~~~~~~--------------~~~~~p~c~Rs~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~~ 540 (1107)
.+-..++..|.++|++-..+. .+...+.|+|||.+|+.+-.+|||++++++++++++.+ + .
T Consensus 154 ~~v~~~f~~L~ekGliY~~~~~v~wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~~~~f~~i~~y~~~Ll~~l---~--~ 228 (880)
T 4arc_A 154 RWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDL---D--K 228 (880)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECC------------------------------CEEEEEECGGGGHHHHHHHG---G--G
T ss_pred HHHHHHHHHHHHCCCEEEeceeEeecCCcCCEecchhhhcCcCcCCCCccEEEEccceEEeechhHHHHHHHH---h--h
Confidence 445678889999998654321 11234789999999999999999999999999999998 3 3
Q ss_pred eEEeccccHHHHHHHhcc
Q 001289 541 LELIPRQYTAEWRRWLEA 558 (1107)
Q Consensus 541 i~~~P~~~~~~~~~wl~~ 558 (1107)
+.-.|+..+....+||..
T Consensus 229 ~~~wp~~v~~~~~~wig~ 246 (880)
T 4arc_A 229 LDHWPDTVKTMQRNWIGR 246 (880)
T ss_dssp CTTSCHHHHHHHHHHHCE
T ss_pred cccccHHHHHHHHhhhcc
Confidence 334788888888999853
No 72
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=88.98 E-value=0.9 Score=52.39 Aligned_cols=71 Identities=15% Similarity=0.093 Sum_probs=42.3
Q ss_pred CCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHH
Q 001289 187 TGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGT 266 (1107)
Q Consensus 187 nG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi~~q~~vEk~l~~~~g~~~~d~~re~f~~~~~~w~~~~~~~ 266 (1107)
||.|||||.++... +.++++ .|+++++..|=.| ++- +..+. +. +.+...+..+...
T Consensus 49 TG~LHlG~~~~al~---~~~~~q-~g~~~ii~I~D~h-a~t-------------~~~~~---~~---e~~~~~~~~~~~~ 104 (394)
T 2dlc_X 49 TGRPHCGYFVPMTK---LADFLK-AGCEVTVLLADLH-AFL-------------DNMKA---PL---EVVNYRAKYYELT 104 (394)
T ss_dssp CSCCBGGGHHHHHH---HHHHHH-TTCEEEEEECHHH-HHH-------------TTTSS---CT---THHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHH---HHHHHH-cCCcEEEEEcCCc-ccc-------------CCCCC---cH---HHHHHHHHHHHHH
Confidence 99999999876643 444555 7888877766333 221 11110 11 1234455666677
Q ss_pred HHHHHHHhcCccccCCc
Q 001289 267 ILRQQRRLGASLDWSRE 283 (1107)
Q Consensus 267 i~~ql~~lG~s~DW~r~ 283 (1107)
+...|..+| +||++.
T Consensus 105 i~~~l~a~G--ldp~k~ 119 (394)
T 2dlc_X 105 IKAILRSIN--VPIEKL 119 (394)
T ss_dssp HHHHHHHTT--CCCTTC
T ss_pred HHHHHHHcC--CChhHc
Confidence 777888888 466664
No 73
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=88.80 E-value=0.59 Score=55.33 Aligned_cols=70 Identities=21% Similarity=0.169 Sum_probs=45.2
Q ss_pred ccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCChHHHH
Q 001289 661 TGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELE 740 (1107)
Q Consensus 661 tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~ 740 (1107)
-|.|.+- ...+.+.+--++.-..| ...-+++|++.+|+||||+.|++ ...++.+ +
T Consensus 217 RG~D~l~-~tp~q~~l~~aLG~~~P--~f~H~pli~~~~g~KLSKR~g~~-~l~~~r~---------~------------ 271 (488)
T 3afh_A 217 RGEDHLS-NTPKQLMIYEAFGWEAP--VFMHIPLILGSDRTPLSKRHGAT-SVEHFRR---------E------------ 271 (488)
T ss_dssp EEGGGGG-GHHHHHHHHHHHTCCCC--EEEEECCEECTTSSBCCTTTSCC-BHHHHHH---------H------------
T ss_pred Echhhhh-CHHHHHHHHHHcCCCCC--eEEEEeeeeCCCCCcccCcCCcc-cHHHHHH---------C------------
Confidence 3666543 33344444444444445 44445899999999999999994 4444433 1
Q ss_pred HHHhccCCCCCCCCCCCCchHHHHHHHhcc
Q 001289 741 VAKKGQKADFPNGIPECGTDALRFALVSYT 770 (1107)
Q Consensus 741 ~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~ 770 (1107)
.|-++|||-||+..+
T Consensus 272 ---------------G~~peal~n~l~~lG 286 (488)
T 3afh_A 272 ---------------GILSRALMNYLALLG 286 (488)
T ss_dssp ---------------TCCHHHHHHHHHHTT
T ss_pred ---------------CCCHHHHHHHHHHhC
Confidence 467899999988754
No 74
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=88.79 E-value=0.34 Score=54.94 Aligned_cols=57 Identities=23% Similarity=0.099 Sum_probs=37.0
Q ss_pred CcCcccccccccchH-HHHHHHHHHHhcCCCCccEEEEcceeeCC-CC-ccccccC-CCccCccc
Q 001289 655 PTSVLETGHDILFFW-VARMVMLGIKLGGEVPFTKVYLHPMIRDA-HG-RKMSKSL-GNVIDPLE 715 (1107)
Q Consensus 655 P~dl~~tG~Dil~fW-~armi~~~~~l~g~~PFk~V~~Hg~v~D~-~G-~KMSKSl-GNvIdP~d 715 (1107)
-+++...|.||.... .+|-++ -.+....| -+..+.++.+. +| .|||||. ||.|+..|
T Consensus 186 ~~~~~~~G~DQ~~~i~l~Rdia--~r~~~~~p--~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~d 246 (348)
T 2j5b_A 186 GIDICQLGIDQRKVNMLAIEYA--NDRGLKIP--ISLSHHMLMSLSGPKKKMSKSDPQGAIFMDD 246 (348)
T ss_dssp CCSEECCBGGGHHHHHHHHHHH--HHTTCCCC--EEEEBCCCCCTTCSSCCCSTTCGGGSCBTTC
T ss_pred CCcEEEeccChHHHHHHHHHHH--HHhCCCCc--eeecCccccCCCCcccccccCCCCCeEeecC
Confidence 467777899996432 233332 22333334 46778899888 57 7999999 57886554
No 75
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=88.69 E-value=0.24 Score=57.77 Aligned_cols=55 Identities=22% Similarity=0.230 Sum_probs=36.2
Q ss_pred CcccccccccchH-HHHHHHHHHHhcCCCCccEEEEcceeeCCCC--ccccccCCC-ccCccc
Q 001289 657 SVLETGHDILFFW-VARMVMLGIKLGGEVPFTKVYLHPMIRDAHG--RKMSKSLGN-VIDPLE 715 (1107)
Q Consensus 657 dl~~tG~Dil~fW-~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G--~KMSKSlGN-vIdP~d 715 (1107)
.+...|.||.... .+|-++ -.+....| .++.+.++...+| .|||||.|| .|+..|
T Consensus 258 ~lVpvG~DQ~~~i~l~Rdla--~r~~~~~P--~~l~~pll~gLdG~~~KMSKS~~nsaI~L~D 316 (437)
T 1r6u_A 258 CLIPCAIDQDPYFRMTRDVA--PRIGYPKP--ALLHSTFFPALQGAQTKMSASDPNSSIFLTD 316 (437)
T ss_dssp EEEEEEGGGHHHHHHHHHHG--GGGTCCCC--EEEEECCCEETTEEEEECCTTSSSSCCBTTC
T ss_pred eEEEeehhhHHHHHHHHHHH--HHhCCCCc--eEeecccccCCCCCccccCCCCCCCeeeccC
Confidence 3444599996432 223322 22223456 4578999999999 899999999 786654
No 76
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=88.52 E-value=0.24 Score=57.07 Aligned_cols=54 Identities=24% Similarity=0.234 Sum_probs=25.0
Q ss_pred cccccccccchH-HHHHHHHHHHhcCCCCccEEEEcceeeCCCC--ccccccCCC-ccCccc
Q 001289 658 VLETGHDILFFW-VARMVMLGIKLGGEVPFTKVYLHPMIRDAHG--RKMSKSLGN-VIDPLE 715 (1107)
Q Consensus 658 l~~tG~Dil~fW-~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G--~KMSKSlGN-vIdP~d 715 (1107)
+...|.||.... .+|-++- .+....| .++.|.++.+.+| .|||||.+| .|+..|
T Consensus 223 lvp~G~DQ~~~i~l~Rdla~--r~~~~~p--~~l~~~~l~gLdG~~~KMSKS~~nsaI~L~D 280 (393)
T 3hv0_A 223 LVPHAIDQDPYFRMVRDVAP--RLGYLKP--SSIHSIFLPSLQGSQTKMSASVQNSSIFVND 280 (393)
T ss_dssp EEEEEGGGHHHHHHHHHHTG--GGTCCCC--EEEEECCCCC-------------CCCCBTTC
T ss_pred ecccccchHHHHHHHHHHHH--HcCCCCc--eeeccCcccCCCCCCcCCCCCCCCCeEeccC
Confidence 345699996443 2333332 2333445 4678999999999 799999998 776543
No 77
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=88.44 E-value=0.27 Score=56.54 Aligned_cols=56 Identities=18% Similarity=0.167 Sum_probs=37.2
Q ss_pred cCcccccccccchH-HHHHHHHHHHhcCCCCccEEEEcceeeCCCC--ccccccCCC-ccCccc
Q 001289 656 TSVLETGHDILFFW-VARMVMLGIKLGGEVPFTKVYLHPMIRDAHG--RKMSKSLGN-VIDPLE 715 (1107)
Q Consensus 656 ~dl~~tG~Dil~fW-~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G--~KMSKSlGN-vIdP~d 715 (1107)
.++...|.||.... ++|-++- .+....| ..+.+.++.+.+| .|||||.+| .|...|
T Consensus 208 a~~vpvG~DQ~~hl~l~Rdla~--r~n~~~p--~~l~~~~l~gLdG~~~KMSKS~~ns~I~L~D 267 (392)
T 3jxe_A 208 RCLIPAAIDQDPYWRLQRDFAE--SLGYYKT--AALHSKFVPSLTSLSGKMSASKPETAIYLTD 267 (392)
T ss_dssp CEEEEEEGGGHHHHHHHHHHTG--GGTSCCC--EEEEECCCCCSSCSSSCCCTTSGGGCCBTTC
T ss_pred CceeecccchHHHHHHHHHHHH--HcCCCCC--eeeecccccCCCCCccccccCCCCCeeeCCC
Confidence 45556799997533 3444432 2233455 4667899999999 599999998 775443
No 78
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=87.57 E-value=0.31 Score=57.60 Aligned_cols=55 Identities=22% Similarity=0.219 Sum_probs=36.3
Q ss_pred CcccccccccchH-HHHHHHHHHHhcCCCCccEEEEcceeeCCCC--ccccccCCC-ccCccc
Q 001289 657 SVLETGHDILFFW-VARMVMLGIKLGGEVPFTKVYLHPMIRDAHG--RKMSKSLGN-VIDPLE 715 (1107)
Q Consensus 657 dl~~tG~Dil~fW-~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G--~KMSKSlGN-vIdP~d 715 (1107)
++...|.||.... .+|-++ -.+....|+ ++.+.++.+.+| .|||||.|| .|+..|
T Consensus 305 ~~VpvG~DQ~~~i~l~Rdla--~r~~~~~p~--~l~~pll~gLdG~~~KMSKS~~nsaI~L~d 363 (477)
T 1r6t_A 305 CLIPCAIDQDPYFRMTRDVA--PRIGYPKPA--LLHSTFFPALQGAQTKMSASDPNSSIFLTD 363 (477)
T ss_dssp EEEEEEGGGHHHHHHHHHHG--GGGTCCCCE--EEEECCCEETTEEEEECCTTSTTCCCBTTC
T ss_pred eeEeccccHHHHHHHHHHHH--HHhCCCCce--eeecccccCCCCCccccCCCCCCCceeecC
Confidence 4444699996532 223332 222335564 578899999999 899999999 776554
No 79
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=87.30 E-value=0.31 Score=56.39 Aligned_cols=57 Identities=26% Similarity=0.286 Sum_probs=39.2
Q ss_pred CcCcccccccccchH-HHHHHHHHHHhcCCCCccEEEEcceeeCCCC--ccccccC-CCccCccc
Q 001289 655 PTSVLETGHDILFFW-VARMVMLGIKLGGEVPFTKVYLHPMIRDAHG--RKMSKSL-GNVIDPLE 715 (1107)
Q Consensus 655 P~dl~~tG~Dil~fW-~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G--~KMSKSl-GNvIdP~d 715 (1107)
-.++...|.||.... .+|-++-- +....| .++.|.++.+.+| .|||||. ||.|+..|
T Consensus 243 ~a~lvpvG~DQ~~~i~l~Rdla~r--~~~~~p--~~l~~~~l~gLdG~~~KMSKS~~~~~I~L~D 303 (406)
T 3tze_A 243 AMCLVPAAVDQDPFFRLARDKAKA--LGEKKP--SSIYVSLLPDLKGVNRKMSASDPNSSIYLDD 303 (406)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHH--HTCCCC--EEEEECCCCCTTSCCCCSSCSCGGGSCBTTC
T ss_pred CCeEEeeccchHHHHHHHHHHHHH--cCCCCc--eeeccCcccCCCCCCcCCCCCCCCCcccCCC
Confidence 345666799997543 44555433 233445 4668999999999 6999999 68886654
No 80
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=87.22 E-value=0.51 Score=59.01 Aligned_cols=71 Identities=11% Similarity=-0.043 Sum_probs=44.9
Q ss_pred EEEEcceeeCCCCccccccCCCc------cCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchH
Q 001289 688 KVYLHPMIRDAHGRKMSKSLGNV------IDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDA 761 (1107)
Q Consensus 688 ~V~~Hg~v~D~~G~KMSKSlGNv------IdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~fp~gi~~~GaDa 761 (1107)
..+-+|++. .+|.|||||+||. |+--|=-.-.++.+|+.+ .|.++|
T Consensus 294 ~~~~fahLn-~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~r---------------------------Gy~PeA 345 (851)
T 2hz7_A 294 HQYEFGRRG-LEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRL---------------------------GVTPEA 345 (851)
T ss_dssp EEEEECCEE-ETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHH---------------------------TCCHHH
T ss_pred CceEEEEec-CCCccccccccccccccCcccCCCCcchhHHHHHHHc---------------------------CCCHHH
Confidence 555667764 7899999999873 211111111234444443 588999
Q ss_pred HHHHHHhccCccccccccHHHHHHH
Q 001289 762 LRFALVSYTAQSDKINLDIQRVVGY 786 (1107)
Q Consensus 762 LRf~L~~~~~~~~Dinf~~~~v~~~ 786 (1107)
||.||+..+-...+..+++..++..
T Consensus 346 Ir~fl~~lG~s~~~~~~e~~~le~~ 370 (851)
T 2hz7_A 346 VRAFAAQIGVSRTNRTVDIAVYENA 370 (851)
T ss_dssp HHHHHHHSCCCSSCEEECHHHHHHH
T ss_pred HHHHHHhcCCCCCcccccHHHHHHH
Confidence 9999988765545556677666643
No 81
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=86.27 E-value=0.54 Score=57.99 Aligned_cols=57 Identities=26% Similarity=0.216 Sum_probs=37.0
Q ss_pred CCcCcccccccccchH-HHHHHHHHHHhcCC-CCccEEEEcceeeCC-CCc-cccccCC-CccCcc
Q 001289 654 YPTSVLETGHDILFFW-VARMVMLGIKLGGE-VPFTKVYLHPMIRDA-HGR-KMSKSLG-NVIDPL 714 (1107)
Q Consensus 654 yP~dl~~tG~Dil~fW-~armi~~~~~l~g~-~PFk~V~~Hg~v~D~-~G~-KMSKSlG-NvIdP~ 714 (1107)
|-+|+...|.||.... .+|-++-- +... .| .++.++++.+. +|. |||||.| |.|+..
T Consensus 182 ~~ad~vpvG~DQ~~~l~l~Rdla~r--~n~~~~p--~~l~~~~l~gL~dG~~KMSKS~~~~~I~L~ 243 (690)
T 3p0j_A 182 LKADICQLGLDQRKVNMLAREYCDL--IGRKLKP--VILSHHMLAGLKQGQAKMSKSDPDSAIFME 243 (690)
T ss_dssp TTCSEECCBGGGHHHHHHHHHHHHH--TTCCCCC--EEEEBCCCCCSSTTCSSCBTTBGGGSCBTT
T ss_pred hCCCEEeccccHHHHHHHHHHHHHH--hCCCCCc--eEeecCeeecCCCCCcCCCCCCCCCeeecc
Confidence 4567888899996532 33333322 2222 13 45678999988 884 9999998 677654
No 82
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=86.26 E-value=0.41 Score=53.11 Aligned_cols=46 Identities=22% Similarity=0.217 Sum_probs=18.3
Q ss_pred cccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCc
Q 001289 662 GHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNV 710 (1107)
Q Consensus 662 G~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNv 710 (1107)
|.|.+- -..+.+.+.-.+ |. |+-.+.-++++++.+|+|||||.||+
T Consensus 191 G~D~l~-~t~~q~~l~~al-G~-~~p~~~H~pll~~~~g~KLSKR~g~~ 236 (298)
T 1nzj_A 191 GADLIE-PTVRQISLYQLF-GW-KVPDYIHLPLALNPQGAKLSKQNHAP 236 (298)
T ss_dssp EGGGHH-HHHHHHHHHHHH-TC-CCCEEEEECBCCC-------------
T ss_pred Cccccc-cHHHHHHHHHHc-CC-CCCeEEEeeeeECCCCCcccccCCcc
Confidence 778653 333444333333 32 33466777899999999999999998
No 83
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=84.70 E-value=0.97 Score=57.46 Aligned_cols=77 Identities=26% Similarity=0.388 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHcCCeecee--------------ccccccceecc-CCCeeEecccccccccccHHHHHHHHhhhccCCC
Q 001289 475 KAREAVNEALKKKGLYRGAK--------------DNEMRLGLCSR-SNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKK 539 (1107)
Q Consensus 475 ~ar~~vi~~L~~~gl~~~~~--------------~~~~~~p~c~R-s~~~ie~~~~~QWfv~~~~~~~~a~~~v~~~~~~ 539 (1107)
+.-..++..|.++|++-..+ +.+...+.|+| ||.+++.+-.+|||+++.++++++++.+ +.
T Consensus 134 ~~v~~~f~~L~~kGliY~~~~~v~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l---~~- 209 (878)
T 2v0c_A 134 RWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDL---EG- 209 (878)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECGGGGHHHHHHTT---TT-
T ss_pred HHHHHHHHHHHHCCCEEEcceeEEEeCCCCCCcCHHHHhcCCCcccCCCceEEEecceeeEecchhHHHHHHHh---hh-
Confidence 34567889999999874421 11223578999 9999999999999999999999999988 43
Q ss_pred ceEEeccccHHHHHHHhc
Q 001289 540 KLELIPRQYTAEWRRWLE 557 (1107)
Q Consensus 540 ~i~~~P~~~~~~~~~wl~ 557 (1107)
.. .|+..++...+|+.
T Consensus 210 -~~-~p~~~~~~~~~wi~ 225 (878)
T 2v0c_A 210 -LN-WPEKVKAMQRAWIG 225 (878)
T ss_dssp -CB-SCHHHHHHHHHHHC
T ss_pred -cC-CCHHHHHHHHHHhc
Confidence 34 89999998899995
No 84
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=84.33 E-value=0.57 Score=56.81 Aligned_cols=55 Identities=22% Similarity=0.217 Sum_probs=34.2
Q ss_pred cccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCcccccc
Q 001289 660 ETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVIN 718 (1107)
Q Consensus 660 ~tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~ 718 (1107)
+-|.|.+- ...+.+.+.-++....| ...-++++++.+|+||||+.||+ ...++.+
T Consensus 320 irG~D~~~-~t~~q~~l~~alg~~~P--~~~hlpli~~~~g~KLSKR~g~~-~l~~~~~ 374 (592)
T 3al0_C 320 FRGEDHLS-NTPKQLMIYEAFGWEAP--VFMHIPLILGSDRTPLSKRHGAT-SVEHFRR 374 (592)
T ss_dssp CEEGGGGG-GHHHHHHHHTTTTCCCC--BCCEECCCBCTTSSBCCTTTCSS-BHHHHHH
T ss_pred EEchhhHh-CHHHHHHHHHHhCCCCC--eEEEeeeeeCCCCCcccccCCcc-cHHHHHH
Confidence 34667543 34445544444433444 44455889999999999999994 4444443
No 85
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=83.41 E-value=0.82 Score=51.73 Aligned_cols=61 Identities=25% Similarity=0.296 Sum_probs=36.9
Q ss_pred CCcCcccccccccch-HHHHHHHHHHHh-cCC-CCccEEEEc---ceeeCC-CC-ccccccCC---CccCcc
Q 001289 654 YPTSVLETGHDILFF-WVARMVMLGIKL-GGE-VPFTKVYLH---PMIRDA-HG-RKMSKSLG---NVIDPL 714 (1107)
Q Consensus 654 yP~dl~~tG~Dil~f-W~armi~~~~~l-~g~-~PFk~V~~H---g~v~D~-~G-~KMSKSlG---NvIdP~ 714 (1107)
|-+++...|.||... =++|-++--+.. .|+ .|-...+++ .++.+. +| +|||||.+ |.|...
T Consensus 151 ~~ad~vpvG~DQ~~hleltRdia~rfn~~yg~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~ 222 (346)
T 3n9i_A 151 YQTNQVPVGEDQKQHLELSRDIASRFNNLYGDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELL 222 (346)
T ss_dssp TTCSEECCCGGGHHHHHHHHHHHHHHHHHHSSCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTT
T ss_pred hCceEEEeccchHHHHHHHHHHHHHhccccCCcccccchhccCCcccCccCCCCccccCCCCCCCCceecCC
Confidence 446777789999864 466766644332 221 122244444 456666 67 59999997 577544
No 86
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=82.40 E-value=0.27 Score=57.41 Aligned_cols=51 Identities=24% Similarity=0.249 Sum_probs=33.7
Q ss_pred ccccccccchH-HHHHHHHHHHhcCCCCccEEEEcceeeCCCCc--cccccCCC-ccCc
Q 001289 659 LETGHDILFFW-VARMVMLGIKLGGEVPFTKVYLHPMIRDAHGR--KMSKSLGN-VIDP 713 (1107)
Q Consensus 659 ~~tG~Dil~fW-~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~--KMSKSlGN-vIdP 713 (1107)
...|.||.+.. ++|-++--+ ....| .++.|.++.+.+|. |||||.+| .|..
T Consensus 291 VPvG~DQ~~hlel~Rdia~rf--n~~~p--~~~~~~~l~gLdG~~~KMSKS~~ns~I~l 345 (451)
T 3foc_A 291 IASGIEQDPYFRLARDLAPRM--GHPKN--AYLLGKFLPGLQGSGTKMSASDPNSAIYL 345 (451)
T ss_dssp EEECTTTHHHHHHHHHHTTTT--TSCCC--EEEEECCCCBTTBTTCCCCTTCGGGSCBT
T ss_pred eeeecchHHHHHHHHHHHHHh--CCCCC--eeecCCcccCCCCCCCccCCCCCCCeeee
Confidence 34599998654 455554322 22234 46778899888886 99999998 5543
No 87
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=81.25 E-value=0.53 Score=53.21 Aligned_cols=62 Identities=26% Similarity=0.266 Sum_probs=38.5
Q ss_pred CCcCcccccccccch-HHHHHHHHHHHh-cCC----CCccEEEE---cceeeCC-CC-ccccccC---CCccCccc
Q 001289 654 YPTSVLETGHDILFF-WVARMVMLGIKL-GGE----VPFTKVYL---HPMIRDA-HG-RKMSKSL---GNVIDPLE 715 (1107)
Q Consensus 654 yP~dl~~tG~Dil~f-W~armi~~~~~l-~g~----~PFk~V~~---Hg~v~D~-~G-~KMSKSl---GNvIdP~d 715 (1107)
|-+|+...|.||... =++|-++--+.. .|. .|-...++ +.++.+. +| +|||||. ||.|...|
T Consensus 142 ~~ad~vpvG~DQ~~hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D 217 (341)
T 3sz3_A 142 YGAHQVPVGSDQKQHLELARDIATRFNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLE 217 (341)
T ss_dssp TTCSEECCCGGGHHHHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTC
T ss_pred cCCCEEEeccchHHHHHHHHHHHHHhchhccCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCC
Confidence 456777789999864 467777654431 231 12123333 4567766 57 6999999 78886543
No 88
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=78.80 E-value=1.7 Score=49.65 Aligned_cols=27 Identities=22% Similarity=0.123 Sum_probs=21.9
Q ss_pred EEEcceeeCCCC------------------ccccccC-CCccCccc
Q 001289 689 VYLHPMIRDAHG------------------RKMSKSL-GNVIDPLE 715 (1107)
Q Consensus 689 V~~Hg~v~D~~G------------------~KMSKSl-GNvIdP~d 715 (1107)
++.|+++.+.+| +|||||. ||.|+..|
T Consensus 220 ~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSKS~~~~~I~L~d 265 (375)
T 2cyc_A 220 AVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPYSAVFIHD 265 (375)
T ss_dssp EEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGSCGGGSCBTTC
T ss_pred EeccccccCCCCcccccccchhhhhhhhhhhcccCCCCCCeeccCC
Confidence 466889999988 8999999 77786654
No 89
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=77.84 E-value=3.4 Score=47.15 Aligned_cols=38 Identities=16% Similarity=0.192 Sum_probs=26.1
Q ss_pred EEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccC
Q 001289 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPG 220 (1107)
Q Consensus 178 ~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G 220 (1107)
.|.++.- |||.|||||.++... +.++++ .|+++.+..|
T Consensus 37 ~vy~G~~-PTG~lHlG~~~~~l~---~~~~~q-~g~~~i~~I~ 74 (372)
T 1n3l_A 37 KIYWGTA-TTGKPHVAYFVPMSK---IADFLK-AGCEVTILFA 74 (372)
T ss_dssp EEEEEEC-CSSCCBGGGHHHHHH---HHHHHH-TTCEEEEEEC
T ss_pred EEEeCcC-CCCcccHHHHHHHHH---HHHHHH-CCCCEEEEEc
Confidence 4444433 699999999876544 445555 6888877666
No 90
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=77.67 E-value=5.3 Score=47.14 Aligned_cols=83 Identities=25% Similarity=0.280 Sum_probs=50.4
Q ss_pred ccccccchHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCChHHHH
Q 001289 661 TGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELE 740 (1107)
Q Consensus 661 tG~Dil~fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~ 740 (1107)
=|.|.+- -..+.+.+--+|.-..| ...-+++|++.+|+||||+.|.+ ++.+++++
T Consensus 226 RG~D~l~-~tprq~~l~~aLG~~~P--~f~HlpLi~~~~g~KLSKR~g~~----------sl~~~r~~------------ 280 (490)
T 4g6z_A 226 RGDDHVN-NTPRQINILRALGGEVP--VYAHLPTVLNEQGEKMSKRHGAM----------SVMGYRDA------------ 280 (490)
T ss_dssp EEGGGGG-GHHHHHHHHHHTTCCCC--EEEEECCEECTTSSBCCTTTTCC----------BHHHHHHT------------
T ss_pred ecccccc-ChHHHHHHHHHcCCCCC--eEEEecceeCCCCCcccCCCCCc----------CHHHHHHC------------
Confidence 3666443 23444554445544556 44455899999999999999852 33334333
Q ss_pred HHHhccCCCCCCCCCCCCchHHHHHHHhccCc-cccccccHHHH
Q 001289 741 VAKKGQKADFPNGIPECGTDALRFALVSYTAQ-SDKINLDIQRV 783 (1107)
Q Consensus 741 ~a~~~~~~~fp~gi~~~GaDaLRf~L~~~~~~-~~Dinf~~~~v 783 (1107)
.|-++|+|=||+..+-. ++.--|+.+.+
T Consensus 281 ---------------G~~peal~n~l~~lG~s~~~~e~~s~~el 309 (490)
T 4g6z_A 281 ---------------GYLPEAVLNYLARLGWSHGDAEIFTREQF 309 (490)
T ss_dssp ---------------TCCHHHHHHHHHTSSBCCTTCCCCCHHHH
T ss_pred ---------------CCCHHHHHHHHHHhCCCCCCccccCHHHH
Confidence 57899999999876532 22223554443
No 91
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=77.01 E-value=3.3 Score=46.33 Aligned_cols=43 Identities=16% Similarity=0.329 Sum_probs=26.0
Q ss_pred cEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCc
Q 001289 176 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1107)
Q Consensus 176 ~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~ 223 (1107)
++.+.++. -|||.|||||+.. +. .+.++++ .|+++.+..|=.|
T Consensus 32 ~~~vy~G~-~PTg~lHlG~l~~-l~--~~~~lq~-~g~~~~~~i~D~~ 74 (323)
T 2cyb_A 32 KPRAYVGY-EPSGEIHLGHMMT-VQ--KLMDLQE-AGFEIIVLLADIH 74 (323)
T ss_dssp CCEEEEEE-CCCSCCBHHHHHH-HH--HHHHHHH-TTCEEEEEECHHH
T ss_pred CCEEEECc-CCCCcchHHHHHH-HH--HHHHHHH-CCCcEEEEECCce
Confidence 34555554 4799999999532 22 3444444 3888777665433
No 92
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=75.63 E-value=1.9 Score=49.48 Aligned_cols=62 Identities=23% Similarity=0.219 Sum_probs=37.1
Q ss_pred CCcCcccccccccc-hHHHHHHHHHHHh-cCC-CCccEEEEc---ceeeCC-CC-ccccccC---CCccCccc
Q 001289 654 YPTSVLETGHDILF-FWVARMVMLGIKL-GGE-VPFTKVYLH---PMIRDA-HG-RKMSKSL---GNVIDPLE 715 (1107)
Q Consensus 654 yP~dl~~tG~Dil~-fW~armi~~~~~l-~g~-~PFk~V~~H---g~v~D~-~G-~KMSKSl---GNvIdP~d 715 (1107)
|-+++...|.||.. +=++|-++--+.. .|+ .+..+-+++ .+|.+. +| +|||||. ||.|...|
T Consensus 170 ~~ad~vPvG~DQ~~hleltRdia~rfn~~y~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D 242 (388)
T 3prh_A 170 YGTDLVPPGEDQKQHLELTRNLAERFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLD 242 (388)
T ss_dssp TTCCEECCCSSCHHHHHHHHHHHHHHHHHTCSCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTC
T ss_pred hCCCEEEechhHHHHHHHHHHHHHHhCcccCCCcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCC
Confidence 45678888999985 4466666644332 221 122233443 345544 33 7999999 89986543
No 93
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=75.53 E-value=5.5 Score=36.71 Aligned_cols=69 Identities=12% Similarity=0.226 Sum_probs=48.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cCccc---c------CCHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 001289 1038 VDIEAEREKIRTKLTETQKQREKLEKIINA----PGYQE---K------VPSRI-QEDNAAKLAKLLQEIDFFENESNRL 1103 (1107)
Q Consensus 1038 iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~~----~~f~~---K------aP~~v-~e~~~~Kl~~~~~el~~l~~~l~~l 1103 (1107)
-++..+|+.|+.+.++|.++++.|+.+|.+ -.|-. | -|... .+..++.++.+++|++++...+..+
T Consensus 15 ~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~~l 94 (100)
T 1go4_E 15 DTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAM 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677778888888888888888877766 44522 1 23332 3456788899999999999999988
Q ss_pred hcC
Q 001289 1104 GNS 1106 (1107)
Q Consensus 1104 ~~~ 1106 (1107)
+..
T Consensus 95 Eeg 97 (100)
T 1go4_E 95 ERG 97 (100)
T ss_dssp C--
T ss_pred hcc
Confidence 763
No 94
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=74.40 E-value=2 Score=49.10 Aligned_cols=57 Identities=23% Similarity=0.109 Sum_probs=37.4
Q ss_pred Ccccccccccc-hHHHHHHHHHHHhcCCCCccEEEEcceeeCCCCccccccCCC-ccCc
Q 001289 657 SVLETGHDILF-FWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGN-VIDP 713 (1107)
Q Consensus 657 dl~~tG~Dil~-fW~armi~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGN-vIdP 713 (1107)
.+.-.|.||.. +=++|-++--+.-.-..|......|.++-..+|+|||||.+| .|..
T Consensus 210 ~~VPVG~DQ~~hleltRdiA~rfn~~~~~~~P~~~~~~~~pgldG~KmS~S~~ns~I~l 268 (372)
T 3a04_A 210 VVVPVGADQDPHLRLTRDLADRMAGVVELERPASTYHKLQPGLDGRKMSSSRPDSTIFL 268 (372)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHTTTTSCCCCCEEEEECCCBCTTSSBCCTTSGGGSCBT
T ss_pred eecccchhhHHHHHHHHHHHHHhcCcccccChhhhhhcccCCCCCCccCCCCCCccccc
Confidence 44456999975 456676664332111234446778888888899999999855 5543
No 95
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=72.00 E-value=12 Score=34.38 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----CcCc--cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001289 1043 EREKIRTKLTETQKQREKLEKIIN----APGY--QEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1105 (1107)
Q Consensus 1043 Ei~kL~kkl~kl~k~i~~l~~~l~----~~~f--~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~~l~~ 1105 (1107)
.|.+|++++++..+..+.+.++.. ||.| ...+ +.-......++..++.++.+++..|+.++.
T Consensus 23 Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~-~~~L~e~~~kid~L~~el~K~q~~L~e~e~ 90 (98)
T 2ke4_A 23 QLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASL-EPQIAETLSNIERLKLEVQKYEAWLAEAES 90 (98)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444444455555544 5887 4444 555666778888899999999888888764
No 96
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=71.80 E-value=0.87 Score=51.06 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=25.5
Q ss_pred CCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccCh
Q 001289 186 VTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGI 226 (1107)
Q Consensus 186 vnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~Gi 226 (1107)
|||.|||||.++.+.. +.++++ |+++.+..| |-|++
T Consensus 12 PTg~lHlG~~lg~l~~--~~~lQ~--g~~~~~~ia-D~ha~ 47 (322)
T 3tzl_A 12 PSGDLHIGNYFGAIKQ--MVDAQE--KSQMFMFIA-NYHAM 47 (322)
T ss_dssp CSSCCBHHHHHHTHHH--HHHTTT--TSCCEEEEC-HHHHT
T ss_pred CCccccHHHHHHHHHH--HHHHhc--CCCEEEEEe-cCeee
Confidence 5899999998865443 556666 999887776 43443
No 97
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=68.19 E-value=7.9 Score=44.37 Aligned_cols=59 Identities=10% Similarity=0.067 Sum_probs=37.2
Q ss_pred HHHhcCCcccCCC--------CCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCC
Q 001289 159 WWENSGYFIADNK--------SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 221 (1107)
Q Consensus 159 ~W~~~~~f~~~~~--------~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~ 221 (1107)
.+...|+|....+ ..+++|.+.+|. -|||.|||||..... .+.+++..-|..+.+..|-
T Consensus 57 ~~l~RG~i~~~~d~~~ll~~~~~~~~~~vysG~-~PTG~lHLGh~v~~~---~~~~lQ~~~g~~v~i~I~D 123 (386)
T 3hzr_A 57 HYLSRGVFLAEKSLDKFLDDVEAKKPTFIFIQK-YPQKEVALEEYITLE---FARYLQDAFNIQVIIQILD 123 (386)
T ss_dssp HHHHTTSEEEESSHHHHHHHHHTTCCEEEEEEE-CCCSSCBGGGHHHHH---HHHHHHHHHCCEEEEEECH
T ss_pred HHHHCcCccccccHHHHHHHHhcCCCeEEEecc-CCCCCccHHHHHHHH---HHHHHHHhcCCeEEEEeCc
Confidence 4456777754332 134467777764 579999999977652 2333555568888777543
No 98
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=67.62 E-value=1.9 Score=49.31 Aligned_cols=59 Identities=15% Similarity=0.257 Sum_probs=36.7
Q ss_pred HHhcCCcccCCC--------CCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCc
Q 001289 160 WENSGYFIADNK--------SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1107)
Q Consensus 160 W~~~~~f~~~~~--------~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~ 223 (1107)
|-..|+|=...+ +.+++|+|.+|. -|||.|||||.+.. ++ .++..-.|++|.+..+=+|
T Consensus 46 ~lrRgi~f~hRd~d~il~~~e~gk~~~v~sG~-~PTG~lHLGhyv~~-~~---~~~lq~~~~~~~~~IaD~h 112 (372)
T 3a04_A 46 LMRRGIIFGHRDFDKILEAKARGERVAVLTGF-MPSGKFHFGHKLTV-DQ---LIYLQKNGFKVFVAIADAE 112 (372)
T ss_dssp HHHTTSEEEEESHHHHHHHHHTTCCCEEEEEE-CCCSCCBHHHHHHH-HH---HHHHHHTTCEEEEEECHHH
T ss_pred hhccceeeeccCHHHHHHHHHcCCCCEEEeCc-CCCcHhHHHHHHHH-HH---HHHHHhCCCeEEEEEecch
Confidence 566777744322 234567777663 56999999998743 22 3344446999987666433
No 99
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=67.55 E-value=3.3 Score=47.14 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=22.0
Q ss_pred CCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCC
Q 001289 185 NVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 221 (1107)
Q Consensus 185 yvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~ 221 (1107)
-|||.||||| +..+. .+.++++ .|+++.+..|=
T Consensus 43 ~PTg~lHlG~-l~~l~--~~~~lQ~-~G~~~~~~iaD 75 (364)
T 2cya_A 43 EPSGVAHIGW-LVWMY--KVKDLVE-AGVDFSVLEAT 75 (364)
T ss_dssp CCCSSCBTHH-HHHHH--HHHHHHH-TTCEEEEEECH
T ss_pred CCCCCccHhH-HHHHH--HHHHHHH-CCCCEEEEEeC
Confidence 3489999999 54332 2444444 48998887773
No 100
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=64.37 E-value=1.9 Score=48.43 Aligned_cols=32 Identities=16% Similarity=0.305 Sum_probs=22.2
Q ss_pred CCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCC
Q 001289 186 VTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 221 (1107)
Q Consensus 186 vnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~ 221 (1107)
|||.|||||.+..+. -+.+++. |+++.+..|=
T Consensus 10 PTG~lHlGn~vg~l~--~~~~lQ~--g~~~~~~IaD 41 (328)
T 1i6k_A 10 PSGVITIGNYIGALR--QFVELQH--EYNCYFCIVD 41 (328)
T ss_dssp CCSCCBHHHHHHTHH--HHHHHTT--TSEEEEEECH
T ss_pred CCCcccHHHHHHHHH--HHHHHHc--CCcEEEEEeC
Confidence 489999999887652 2223433 8998877763
No 101
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=63.16 E-value=29 Score=30.95 Aligned_cols=48 Identities=4% Similarity=0.058 Sum_probs=41.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHH
Q 001289 1039 DIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQ 1091 (1107)
Q Consensus 1039 D~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~ 1091 (1107)
.+.++++.|+.++++++++++.++..|+++. |+.+++..-++|-+|-+
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~-----~~~~~~~hI~~Lh~YNe 52 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAKLKNRD-----AKQTVQKHIDLLHTYNE 52 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSSC-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----HHHHHHHHHHHHHHHhH
Confidence 3568899999999999999999999998764 88899999999988754
No 102
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=62.77 E-value=8.6 Score=44.14 Aligned_cols=44 Identities=14% Similarity=0.059 Sum_probs=28.7
Q ss_pred CcEEEECCCCCCC-CCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCC
Q 001289 175 PSFVIVLPPPNVT-GALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMD 222 (1107)
Q Consensus 175 ~~f~i~~pPPyvn-G~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D 222 (1107)
++|.+.+|. -|| |+|||||..... .+.++++.-|..|.+..|=+
T Consensus 73 ~~~~vy~G~-~PTa~~lHlGh~v~~~---~~~~lQ~~~~~~v~i~I~D~ 117 (393)
T 3hv0_A 73 ELFYLYTGR-GPSSESLHVGHLVPFL---FTKYLQDTFKVPLVIQLTDD 117 (393)
T ss_dssp CCCEEEEEE-CCSSSSCBSTTHHHHH---HHHHHHHHHCCCEEEEECHH
T ss_pred CCeEEEeCC-CCCCCCccHHHHHHHH---HHHHHHHhcCCCeEeeccCh
Confidence 346666653 457 789999976554 34556776677777765544
No 103
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=61.14 E-value=3.1 Score=47.49 Aligned_cols=36 Identities=14% Similarity=0.302 Sum_probs=23.2
Q ss_pred CCCCCCchhhHHhHHHH-HHHHHHHhcCCeeeeccCCCccCh
Q 001289 186 VTGALHIGHALTTAIQD-TIIRWRRMSGYNALWVPGMDHAGI 226 (1107)
Q Consensus 186 vnG~LHiGHal~~~i~D-~i~Ry~rm~G~~Vl~~~G~D~~Gi 226 (1107)
|||.|||||. ++.= .+.++++ .|+.|.+..| |-||+
T Consensus 65 PTg~lHlG~g---vl~~~~~~~lQ~-~G~~~~~lIa-D~ha~ 101 (373)
T 3vgj_A 65 PSGRMHIAQG---LLKSIIVNKLTS-NGCTFIFWIA-DWFAH 101 (373)
T ss_dssp CCSSCBHHHH---HHHHHHHHHHHT-TTCEEEEEEC-HHHHH
T ss_pred CCCCceehhh---HHHHHHHHHHHH-CCCcEEEEEe-cceeE
Confidence 4899999992 3332 2455554 4999888777 44443
No 104
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=59.39 E-value=18 Score=41.79 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=48.8
Q ss_pred EEecc-ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001289 1033 YLKVE-VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRL 1103 (1107)
Q Consensus 1033 ~l~l~-iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~~l 1103 (1107)
.+.+. +|+++.++.|+++++++++++++++.++.. -|.. ++.+.|+.+++++++.+++.+...
T Consensus 237 ~l~lA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~k~~~~~~~~~~~~~~~~~~~~~~ 300 (426)
T 1lrz_A 237 LVPLAYINFDEYIKELNEERDILNKDLNKALKDIEK------RPEN--KKAHNKRDNLQQQLDANEQKIEEG 300 (426)
T ss_dssp ECEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CTTC--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHhhh------Cccc--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445 899999999999999999999999999842 2322 556677888888888877777665
No 105
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=58.71 E-value=3.6 Score=46.36 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=21.3
Q ss_pred CCCCCCchhhHHhHHHHHHHHHHHhcC-CeeeeccC
Q 001289 186 VTGALHIGHALTTAIQDTIIRWRRMSG-YNALWVPG 220 (1107)
Q Consensus 186 vnG~LHiGHal~~~i~D~i~Ry~rm~G-~~Vl~~~G 220 (1107)
|||.|||||.+..+ --+.++++ .| +++.+..|
T Consensus 10 PTg~lHlGh~~g~l--~~~~~lQ~-~G~~~~~~~Ia 42 (337)
T 2el7_A 10 PSGEIHIGNYLGAI--KQWVAIGE-KLGRDAFFCIV 42 (337)
T ss_dssp SCSCCBHHHHHTHH--HHHHHHHH-HHGGGEEEEEC
T ss_pred CCCcccHHHHHHHH--HHHHHHHh-cCCCCEEEEEe
Confidence 48999999988653 22334454 36 78776666
No 106
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=57.96 E-value=5.8 Score=45.01 Aligned_cols=42 Identities=26% Similarity=0.374 Sum_probs=26.4
Q ss_pred EEEECCCCCCCCC-CCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCc
Q 001289 177 FVIVLPPPNVTGA-LHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1107)
Q Consensus 177 f~i~~pPPyvnG~-LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~ 223 (1107)
+.|.++. -|||. ||||| +..+. .+.++++ .|+++++..|=.|
T Consensus 47 ~~vy~G~-~PTg~sLHLGh-l~~l~--~~~~lQ~-~G~~~~~lIaD~h 89 (356)
T 2pid_A 47 QTIYCGF-DPTADSLHVGH-LLALL--GLFHLQR-AGHNVIALVGGAT 89 (356)
T ss_dssp CEEEEEE-CCSSSSCBHHH-HHHHH--HHHHHHH-TTCEEEEEECTTG
T ss_pred CEEEEee-cCCCCcccHHH-HHHHH--HHHHHHH-CCCcEEEEEccce
Confidence 4444442 35895 99999 44333 2556665 4899988877444
No 107
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=57.93 E-value=7.9 Score=45.16 Aligned_cols=59 Identities=19% Similarity=0.109 Sum_probs=36.5
Q ss_pred HHHhcCCcccCCC--------CCCCcEEEECCCCCCC-CCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCC
Q 001289 159 WWENSGYFIADNK--------SSKPSFVIVLPPPNVT-GALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 221 (1107)
Q Consensus 159 ~W~~~~~f~~~~~--------~~k~~f~i~~pPPyvn-G~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~ 221 (1107)
.+...|+|....+ ..+++|++.+|. -|| |.|||||..... .+.|++..-|..+.+..|-
T Consensus 66 ~~l~RG~i~~~~dl~~ll~~l~~g~p~~vytG~-dPTagsLHLGH~v~~~---~l~~lQ~~~g~~v~I~IgD 133 (451)
T 3foc_A 66 PMLRRGLFYAHRDFEEFLSYYEKGHPIYIYTGR-GPSSGALHLGHLLPFI---FTKYLQDAFKCYVVIQITD 133 (451)
T ss_dssp HHHHTTSEEEEESHHHHHHHHHTTCCEEEEEEE-CCCSSCCBHHHHHHHH---HHHHHHHHHTCEEEEEECH
T ss_pred HHHhCCCccccccHHHHHHHHhcCCCeEEEecC-CCCCCCccHHHHHHHH---HHHHHHHccCceEEEEeeC
Confidence 3455677744322 133467777774 467 899999976543 2344666668888776553
No 108
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=57.79 E-value=3.3 Score=47.61 Aligned_cols=60 Identities=17% Similarity=0.230 Sum_probs=36.0
Q ss_pred HHhcCCcccCCC--------CCCCcEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCc
Q 001289 160 WENSGYFIADNK--------SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1107)
Q Consensus 160 W~~~~~f~~~~~--------~~k~~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~ 223 (1107)
+.+.|+|....+ ..+++|++.+|.= |||.|||||.+.... ..+++.-.|+++.+..|=+|
T Consensus 49 ~~~Rg~i~~~~d~~~l~~~~~~~~p~~i~sG~~-PTG~lHLGh~v~~~~---~~~lQ~~~g~~~~i~IaD~h 116 (392)
T 3jxe_A 49 FFRRKFFFSHRDYDLILKDYEEGRGFFLYTGRG-PSGPMHIGHIIPFFA---TKWLQEKFGVNLYIQITDDE 116 (392)
T ss_dssp HHHTTSEEEEESHHHHHHHHHTTCCCEEEEEEC-CSSCCBHHHHHHHHH---HHHHHHHHCCEEEEEECHHH
T ss_pred HHhCcCcccccCHHHHHHHHhcCCCeEEEeccC-CCCchhHHHHHHHHH---HHHHHHhcCCceEEEecchH
Confidence 445677643322 1234566666643 679999999886641 12233335898888877333
No 109
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=57.73 E-value=6.7 Score=45.08 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=23.4
Q ss_pred CCCC-CCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCc
Q 001289 186 VTGA-LHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1107)
Q Consensus 186 vnG~-LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~ 223 (1107)
|||. |||||.+. + -.+.++++ .|+++++..|=.|
T Consensus 73 PTg~sLHlGhlv~-l--~~l~~lQ~-~G~~~~~lIgD~h 107 (392)
T 1y42_X 73 PTAPSLHVGHLLP-L--MPLFWMYL-EGYKAFTLIGGST 107 (392)
T ss_dssp CCSSSCBGGGHHH-H--HHHHHHHH-HTCEEEEEECTTT
T ss_pred CCCCCccHHHHHH-H--HHHHHHHH-cCCcEEEEEcCce
Confidence 4898 99999773 2 23455554 4999988777443
No 110
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=56.81 E-value=6.2 Score=45.88 Aligned_cols=33 Identities=33% Similarity=0.590 Sum_probs=22.6
Q ss_pred CCC-CCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCC
Q 001289 186 VTG-ALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMD 222 (1107)
Q Consensus 186 vnG-~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D 222 (1107)
||| +||||| +..+. .+.++++ .|+++++..|=.
T Consensus 41 PTg~sLHLGh-lv~l~--~l~~lQ~-~G~~~i~lIgD~ 74 (432)
T 2jan_A 41 PTAPSLHAGH-LVPLL--TLRRFQR-AGHRPIVLAGGA 74 (432)
T ss_dssp CSSSSCBGGG-HHHHH--HHHHHHH-TTCEEEEEECHH
T ss_pred CCCCCcCHHH-HHHHH--HHHHHHH-CCCcEEEEEcCc
Confidence 489 599999 43333 3556664 599998888733
No 111
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=55.28 E-value=6.9 Score=43.72 Aligned_cols=33 Identities=24% Similarity=0.455 Sum_probs=22.3
Q ss_pred CCCC-CCchhhHHhHHHHHHHHHHHhcCCeeeeccCCC
Q 001289 186 VTGA-LHIGHALTTAIQDTIIRWRRMSGYNALWVPGMD 222 (1107)
Q Consensus 186 vnG~-LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D 222 (1107)
|||. |||||.+. + -.+.++++ .|+++++..|=-
T Consensus 42 PTg~slHlGh~l~--l-~~~~~lQ~-~g~~~~~~i~D~ 75 (322)
T 2yxn_A 42 PTADSLHLGHLVP--L-LCLKRFQQ-AGHKPVALVGGA 75 (322)
T ss_dssp CSSSSCBHHHHHH--H-HHHHHHHH-TTCEEEEEECTT
T ss_pred CCCCcccHHHHHH--H-HHHHHHHH-cCCcEEEEEccc
Confidence 4898 99999762 2 23445554 489988877733
No 112
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=54.64 E-value=7.9 Score=44.85 Aligned_cols=34 Identities=35% Similarity=0.484 Sum_probs=23.6
Q ss_pred CCCC-CCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCc
Q 001289 186 VTGA-LHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1107)
Q Consensus 186 vnG~-LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~ 223 (1107)
|||. |||||.+. + -.+.|+++ .|+++++..|=.|
T Consensus 39 PTg~sLHlGh~v~--l-~~l~~lQ~-~G~~~i~lIgd~t 73 (419)
T 2ts1_A 39 PTADSLHIGHLAT--I-LTMRRFQQ-AGHRPIALVGGAT 73 (419)
T ss_dssp CSSSSCBGGGHHH--H-HHHHHHHH-TTCEEEEEECTTG
T ss_pred CCCCCccHHHHHH--H-HHHHHHHH-CCCcEEEEEcCce
Confidence 4898 99999762 2 23455554 5999998887444
No 113
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=53.63 E-value=6.5 Score=44.29 Aligned_cols=39 Identities=23% Similarity=0.433 Sum_probs=24.9
Q ss_pred EEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccC
Q 001289 177 FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPG 220 (1107)
Q Consensus 177 f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G 220 (1107)
.+.+-..| ||.|||||.+..+. -+.++++ .|+++.+..|
T Consensus 14 ~v~~G~~P--TG~lHLGn~~g~l~--~~~~lQ~-~G~~~~~~Ia 52 (340)
T 2g36_A 14 RILSGMRP--TGKLHIGHLVGALE--NWVKLQE-EGNECFYFVA 52 (340)
T ss_dssp EEEEEECC--CSSCBHHHHHTHHH--HHHHHHH-TTCEEEEEEC
T ss_pred eEEEeeCC--CCcccHHhHHHHHH--HHHHHHH-CCCCEEEEEe
Confidence 34444444 79999999887431 3333433 5899888775
No 114
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=53.08 E-value=7.1 Score=45.44 Aligned_cols=58 Identities=10% Similarity=0.218 Sum_probs=35.8
Q ss_pred HHHhcCCcccCCC--------CCCCcEEEECCCCCCC-CCCCchhhHHhHHHHHHHHHHHhcCCeeeeccC
Q 001289 159 WWENSGYFIADNK--------SSKPSFVIVLPPPNVT-GALHIGHALTTAIQDTIIRWRRMSGYNALWVPG 220 (1107)
Q Consensus 159 ~W~~~~~f~~~~~--------~~k~~f~i~~pPPyvn-G~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G 220 (1107)
.+...|+|....+ ..+++|++.+|. -|| |+|||||.+.... +.+++.-.|+++.+..|
T Consensus 77 ~l~~RG~i~~~~d~~~l~~~l~~g~~~~vy~G~-dPTag~LHLGh~v~~~~---l~~lQ~~~g~~~i~lI~ 143 (432)
T 2ip1_A 77 HFLRKGLFFSERDFTKILDLYEQGKPFFLYTGR-GPSSDSMHLGHMIPFVF---TKWLQEVFDVPLVIELT 143 (432)
T ss_dssp HHHHTTSEEEEESHHHHHHHHHHTCCCEEEEEE-CCCSSCCBGGGHHHHHH---HHHHHHHHTCCEEEEEC
T ss_pred HHHhCCCcccCCCHHHHHHHHhcCCCeEEEEee-cCCCCCccHHHHHHHHH---HHHHHHHcCCeEEEEEe
Confidence 3445677665432 123356666553 357 8999999886542 33455546888888777
No 115
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=52.58 E-value=7.9 Score=44.88 Aligned_cols=34 Identities=32% Similarity=0.468 Sum_probs=23.7
Q ss_pred CCCC-CCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCc
Q 001289 186 VTGA-LHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1107)
Q Consensus 186 vnG~-LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~ 223 (1107)
|||. |||||.+. + -.+.++++ .|+++++..|=.|
T Consensus 41 PTg~sLHlGh~v~--l-~~~~~lQ~-~G~~~~~lIgd~t 75 (420)
T 1jil_A 41 PTADSLHIGHLLP--F-LTLRRFQE-HGHRPIVLIGGGT 75 (420)
T ss_dssp CSSSSCBHHHHHH--H-HHHHHHHH-TTCEEEEEECTTG
T ss_pred CCCCCccHHHHHH--H-HHHHHHHH-CCCcEEEEEcCce
Confidence 4898 99999762 2 23455554 5999998887444
No 116
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=52.39 E-value=4.7 Score=44.94 Aligned_cols=33 Identities=18% Similarity=0.457 Sum_probs=22.2
Q ss_pred CCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCc
Q 001289 187 TGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1107)
Q Consensus 187 nG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~ 223 (1107)
||.||||| +..+ -.+.++++ .|+++.+..|=+|
T Consensus 38 Tg~lHlGh-l~~l--~~~~~lQ~-~g~~~~~~i~D~~ 70 (314)
T 2zp1_A 38 SGKIHLGH-YLQI--KKMIDLQN-AGFDIIILLADLA 70 (314)
T ss_dssp CSSCBHHH-HHHH--HHHHHHHH-TTEEEEEEECHHH
T ss_pred CCCcchhh-HHHH--HHHHHHHH-CCCCEEEEEecce
Confidence 89999999 5433 23444554 4899888776444
No 117
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=51.60 E-value=3.4 Score=46.80 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=21.9
Q ss_pred CCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCC
Q 001289 186 VTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 221 (1107)
Q Consensus 186 vnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~ 221 (1107)
|||.|||||.+..+. -+.+++. |+++.+..|=
T Consensus 13 PTG~lHLGn~vg~l~--~~~~lQ~--~~~~~~~IaD 44 (348)
T 2yy5_A 13 ASGKQHLGNYLGVMQ--SLIELQE--QCQLFVFVAD 44 (348)
T ss_dssp CCTTCBHHHHHHTGG--GHHHHHH--HSEEEEEECH
T ss_pred CCCcccHHHHHHHHH--HHHHHHh--CCcEEEEEcC
Confidence 489999999886552 2235554 7887776663
No 118
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=51.55 E-value=20 Score=27.62 Aligned_cols=26 Identities=15% Similarity=0.390 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001289 1040 IEAEREKIRTKLTETQKQREKLEKII 1065 (1107)
Q Consensus 1040 ~~~Ei~kL~kkl~kl~k~i~~l~~~l 1065 (1107)
+++||+|-++++.++++.+..|++.-
T Consensus 14 VdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 14 VDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46777777777777777777776543
No 119
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=49.15 E-value=8.4 Score=47.47 Aligned_cols=45 Identities=11% Similarity=0.155 Sum_probs=28.3
Q ss_pred cEEEECCCCCCCCCCCchhhHHhHHHH-HHHHHHHhcCCeeeeccCCCccCh
Q 001289 176 SFVIVLPPPNVTGALHIGHALTTAIQD-TIIRWRRMSGYNALWVPGMDHAGI 226 (1107)
Q Consensus 176 ~f~i~~pPPyvnG~LHiGHal~~~i~D-~i~Ry~rm~G~~Vl~~~G~D~~Gi 226 (1107)
++.|.++. -|||.||||| .++.- .+.++++ .|++|.+..| |-||+
T Consensus 40 ~~~vy~G~-~PTg~lHLG~---~v~~~~~~~~lQ~-~G~~~~~lIa-D~ha~ 85 (690)
T 3p0j_A 40 LIRCYDGF-EPSGRMHIAQ---GIFKAVNVNKCTA-AGCEFVFWVA-DWFAL 85 (690)
T ss_dssp TEEEEEEE-CCCSCCBHHH---HHHHHHHHHHHHH-TTEEEEEEEC-CGGGG
T ss_pred CceEEeee-cCCCcchhHh---hHHHHHHHHHHHH-CCCcEEEEEe-eeEEE
Confidence 45555553 4689999999 23322 2445555 4898887777 55565
No 120
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=48.82 E-value=9 Score=45.12 Aligned_cols=61 Identities=15% Similarity=0.217 Sum_probs=38.7
Q ss_pred HHHhcCCcccCCC--------CCCCcEEEECCCCCCC-CCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCc
Q 001289 159 WWENSGYFIADNK--------SSKPSFVIVLPPPNVT-GALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1107)
Q Consensus 159 ~W~~~~~f~~~~~--------~~k~~f~i~~pPPyvn-G~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~ 223 (1107)
.+...|+|....+ ..+++|.+.+|. -|| |+|||||.+.... +.++++-.|+++.+..|=+|
T Consensus 130 ~l~~RG~i~~~~d~~~l~~~l~~~~~~~vy~G~-dPTag~LHLGh~v~~~~---~~~lQ~~~g~~~iilI~D~~ 199 (477)
T 1r6t_A 130 HFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGR-GPSSEAMHVGHLIPFIF---TKWLQDVFNVPLVIQMTDDE 199 (477)
T ss_dssp HHHHTTSEEEEESHHHHHHHHHTTCCEEEEEEE-CCCTTCCBGGGHHHHHH---HHHHHHHHTCCEEEEECHHH
T ss_pred HHHhCCCccccCCHHHHHHHHhcCCCcEEEEcc-cCCCCCccHHHHHHHHH---HHHHHHHhCCcEEEEEecce
Confidence 4556788765433 123467777664 457 8999999987542 33455546888877776443
No 121
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=48.77 E-value=8.2 Score=44.50 Aligned_cols=61 Identities=13% Similarity=0.176 Sum_probs=37.5
Q ss_pred HHHhcCCcccCCC--------CCCCcEEEECCCCCCCC-CCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCc
Q 001289 159 WWENSGYFIADNK--------SSKPSFVIVLPPPNVTG-ALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1107)
Q Consensus 159 ~W~~~~~f~~~~~--------~~k~~f~i~~pPPyvnG-~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~ 223 (1107)
.+.+.|+|-...+ ..+++|.+.+|. -||| .|||||..... .+.+++..-|..+.+..|=+|
T Consensus 76 ~~~~RG~i~~~~d~~~ll~~~~~~~p~~vy~G~-~PTg~~lHLGh~v~~~---~~~~lQ~~~g~~~~i~IaD~~ 145 (406)
T 3tze_A 76 YFFRRGIVFAHRDFNLLLDEIANNRPFYLYTGR-GPSSKTMHIGHTIPFL---LCKYMQDAFKIRLVIQITDDE 145 (406)
T ss_dssp HHHHTTSEEEEESHHHHHHHHHTTCCEEEEEEE-CCCSSCCBGGGHHHHH---HHHHHHHHHTCCEEEEECHHH
T ss_pred HHHhCCCeeccccHHHHHHHHhcCCCeEEEEee-CCCCCcccHHHHHHHH---HHHHHHHhcCCcEEEEeeChH
Confidence 4456777754332 234567777764 5698 89999977642 333355555887777655333
No 122
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=47.98 E-value=10 Score=44.05 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=23.2
Q ss_pred CCC-CCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCc
Q 001289 186 VTG-ALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1107)
Q Consensus 186 vnG-~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~ 223 (1107)
||| +|||||.+. --.+.+++. .|+++.+..|=.|
T Consensus 46 PTg~sLHlGh~v~---l~~l~~lQ~-~G~~~i~lIgD~t 80 (432)
T 1h3f_A 46 PTRPDLHLGHAVV---LRKMRQFQE-LGHKVVLIIGDFT 80 (432)
T ss_dssp TTCCSCBHHHHHH---HHHHHHHHH-TTCEEEEEECCCC
T ss_pred CCCCCCchhhHHH---HHHHHHHHH-CCCCEEEEEccce
Confidence 488 599999772 234455554 4999888887444
No 123
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=47.80 E-value=20 Score=35.27 Aligned_cols=28 Identities=11% Similarity=0.064 Sum_probs=16.8
Q ss_pred HHHHcC-CEEEeeeeeeecCCCCcccccc
Q 001289 301 RLYKEG-LIYRDLRLVNWDCVLRTAISDI 328 (1107)
Q Consensus 301 ~L~~~G-lIyr~~~~V~W~p~~~TaLsd~ 328 (1107)
.+..+| .+.--..+-.|||.|..-+...
T Consensus 28 d~~~~Gk~vvl~f~~~~~cp~C~~e~~~l 56 (164)
T 4gqc_A 28 EVLKRGRPAVLIFFPAAFSPVCTKELCTF 56 (164)
T ss_dssp HHHHTSSCEEEEECSCTTCCEECSSCEES
T ss_pred HHhcCCCEEEEEEeCCCCCCCcccchhhh
Confidence 444466 2444445566899998766553
No 124
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=46.95 E-value=9 Score=44.60 Aligned_cols=60 Identities=15% Similarity=0.218 Sum_probs=37.7
Q ss_pred HHHhcCCcccCCC--------CCCCcEEEECCCCCCC-CCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCC
Q 001289 159 WWENSGYFIADNK--------SSKPSFVIVLPPPNVT-GALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMD 222 (1107)
Q Consensus 159 ~W~~~~~f~~~~~--------~~k~~f~i~~pPPyvn-G~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D 222 (1107)
.+...|+|....+ ..+++|.+.++. -|| |+|||||.+.... +.+++.-.|+++.+..|=.
T Consensus 83 ~l~~RG~i~~~~d~~~l~~~l~~~~~~~vy~G~-dPTag~LHLGh~v~~~~---~~~lQ~~~G~~~iilIgD~ 151 (437)
T 1r6u_A 83 HFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGR-GPSSEAMHVGHLIPFIF---TKWLQDVFNVPLVIQMTDD 151 (437)
T ss_dssp HHHHHTSEEEEESHHHHHHHHTTTCCEEEEEEE-CCCSSCCBHHHHHHHHH---HHHHHHHHTCCEEEEECHH
T ss_pred HHHhCCCccCCCCHHHHHHHHhcCCCcEEEEcc-cCCCCCccHHHHHHHHH---HHHHHHHhCCcEEEEEecc
Confidence 3455677755432 233467777664 457 8999999986542 3345554688877777643
No 125
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=45.33 E-value=12 Score=42.34 Aligned_cols=44 Identities=18% Similarity=0.063 Sum_probs=27.0
Q ss_pred cEEEECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCc
Q 001289 176 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1107)
Q Consensus 176 ~f~i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~ 223 (1107)
++++.+|. -|||.|||||.+..+ -.+.++++ .|+++.+..|=.|
T Consensus 40 ~~~vy~G~-~PTg~lHlGhyl~~l--~~~~~lQ~-~G~~~~~~i~D~~ 83 (348)
T 2j5b_A 40 IFTAYNGF-EPSGRIHIAQALITV--MNTNNMIE-CGGQMIIYIADWF 83 (348)
T ss_dssp CEEEEEEE-CCCSSCBHHHHHHHH--HHHHHHHH-TTEEEEEEECHHH
T ss_pred CCEEEecc-CCCCCCchhHHHHHH--HHHHHHHH-cCCcEEEEeccch
Confidence 34455553 457999999943322 23455565 4898887776433
No 126
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=44.76 E-value=28 Score=33.98 Aligned_cols=67 Identities=16% Similarity=0.144 Sum_probs=33.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001289 1038 VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLG 1104 (1107)
Q Consensus 1038 iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~~l~ 1104 (1107)
+++..|+-+++.+.+.++.+++.+.+.+.+=.-.-..-..-.+.-++.+++++.++..++..+..|+
T Consensus 64 LNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 64 LNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666665555544421110000112234444555666666666666666554
No 127
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=42.73 E-value=5.5 Score=44.90 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=20.8
Q ss_pred CCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccC
Q 001289 186 VTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPG 220 (1107)
Q Consensus 186 vnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G 220 (1107)
|||.|||||.++.+- -+.+++. |+++.+..+
T Consensus 15 PTG~lHLGhy~g~l~--~~~~lQ~--~~~~~~~ia 45 (341)
T 3sz3_A 15 PSGELSIGNYLGALR--QWQQMQD--DYDCQYCVV 45 (341)
T ss_dssp SSSCCBHHHHHHTGG--GHHHHHH--HSEEEEEEC
T ss_pred CCCcccHHHHHHHHH--HHHHHHh--cCeEEEEEe
Confidence 589999999886541 2334444 577776665
No 128
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=42.61 E-value=6.3 Score=44.61 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=19.2
Q ss_pred CCCCCchhhHHhHHHHHHHHHHHhc-CCeeeeccC
Q 001289 187 TGALHIGHALTTAIQDTIIRWRRMS-GYNALWVPG 220 (1107)
Q Consensus 187 nG~LHiGHal~~~i~D~i~Ry~rm~-G~~Vl~~~G 220 (1107)
||.|||||.+..+ ..|.+|+ .+++.+..|
T Consensus 32 TG~lHLGn~~g~l-----~~~~~lQ~~~~~~~~Ia 61 (351)
T 1yi8_B 32 TGALHLGHLAGSL-----QNRVRLQDEAELFVLLA 61 (351)
T ss_dssp SSCCBHHHHHHTH-----HHHHHHTSSSEEEEEEC
T ss_pred CCCccHHHHHHHH-----HHHHHHHHhCCeEEEEe
Confidence 8999999988753 2343333 367766655
No 129
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=39.94 E-value=83 Score=28.84 Aligned_cols=59 Identities=14% Similarity=0.234 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001289 1041 EAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1105 (1107)
Q Consensus 1041 ~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~~l~~ 1105 (1107)
.+.+..++..++.++.-|++++--+.+ +|+..+..-..|+.+|+.++.+++..+..+..
T Consensus 37 k~~i~~ie~~l~EA~ell~qMelE~r~------~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~~ 95 (102)
T 1vcs_A 37 KQMVANVEKQLEEARELLEQMDLEVRE------IPPQSRGMYSNRMRSYKQEMGKLETDFKRSRI 95 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT------SCTTTHHHHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh------CCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777888888888888887765553 58899999999999999999999998877654
No 130
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=39.88 E-value=35 Score=32.10 Aligned_cols=50 Identities=16% Similarity=0.188 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 001289 1040 IEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFEN 1098 (1107)
Q Consensus 1040 ~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~ 1098 (1107)
..+||.+|..+|++++..++.+..+= ..+++.+-.+..+.+.++|+.+..
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rg---------d~~~i~qf~~E~~~l~k~I~~lk~ 57 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVE---------AADKYAELEKEKATLEAEIARLRE 57 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTT---------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC---------CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777766655554332 334544444444555555554443
No 131
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=39.60 E-value=7.3 Score=44.66 Aligned_cols=41 Identities=17% Similarity=0.320 Sum_probs=25.6
Q ss_pred EECCCCCCCCCCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCccC
Q 001289 179 IVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAG 225 (1107)
Q Consensus 179 i~~pPPyvnG~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~~G 225 (1107)
|.+|. -|||.|||||.++.+.+ +.+++ .|+++.+..+ |-|+
T Consensus 38 i~sG~-~PTG~lHLGhyvGal~~--~~~LQ--~~~~~~~~Ia-D~hA 78 (388)
T 3prh_A 38 IFSGI-QPSGSVTLGNYIGAMKQ--FVELQ--HDYNSYFCIV-DQHA 78 (388)
T ss_dssp EEEEE-CCCSCCBHHHHHHTHHH--HHHTT--TTSEEEEEEC-HHHH
T ss_pred EEEee-CCCCcchHHHHHHHHHH--HHHHH--ccCcEEEEEe-ccee
Confidence 55543 46999999998875431 22233 3898877665 4443
No 132
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=37.26 E-value=89 Score=28.65 Aligned_cols=59 Identities=12% Similarity=0.138 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001289 1040 IEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1105 (1107)
Q Consensus 1040 ~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~~l~~ 1105 (1107)
.+.|+.-|++++..++.++++++..|... ....+.......+.+.+...|...|..|+.
T Consensus 42 ~E~Ei~sL~kk~~~lE~eld~~ee~L~ea-------~~kLee~ek~~~~aE~ev~~L~RriqllEE 100 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTEDSRDQVLEELHKS-------EDSLLFAEENAAKAESEVASLNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45677777778877777777777766632 123445566677888899999888887753
No 133
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=36.85 E-value=58 Score=29.61 Aligned_cols=57 Identities=12% Similarity=0.126 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCccccC--CHHHHHHHHHHHHHHHHHHHH-HHHHHHHhh
Q 001289 1042 AEREKIRTKLTETQKQREKLEKIINAPGYQEKV--PSRIQEDNAAKLAKLLQEIDF-FENESNRLG 1104 (1107)
Q Consensus 1042 ~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~Ka--P~~v~e~~~~Kl~~~~~el~~-l~~~l~~l~ 1104 (1107)
+-+..++..++.+..-|++++--+. .+ |+..+..-..|+.+|+.++.+ +...+..|.
T Consensus 34 ~~i~~ie~~ldEA~ell~qMelE~~------~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~ 93 (97)
T 3onj_A 34 TTLKHVEQQQDELFDLLDQMDVEVN------NSIGDASERATYKAKLREWKKTIQSDIKRPLQSLV 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566666666666666665444 45 999999999999999999999 999888775
No 134
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=35.83 E-value=88 Score=28.72 Aligned_cols=54 Identities=13% Similarity=0.189 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001289 1041 EAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENES 1100 (1107)
Q Consensus 1041 ~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l 1100 (1107)
.+.+..++..++.++.-|++++--+. .+|+..+..-..|+.+|+.++.+++..+
T Consensus 48 k~~i~~ie~~ldEA~eLl~qMelE~r------~~p~s~R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 48 KKLVRDFDEKQQEANETLAEMEEELR------YAPLTFRNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------TSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------hCCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34566677777777777777665444 4699999999999999999999987654
No 135
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=34.03 E-value=8.8 Score=43.32 Aligned_cols=30 Identities=23% Similarity=0.555 Sum_probs=19.9
Q ss_pred CCCCCCchhhHHhHHHHHHHHHHHh-cCCeeeeccC
Q 001289 186 VTGALHIGHALTTAIQDTIIRWRRM-SGYNALWVPG 220 (1107)
Q Consensus 186 vnG~LHiGHal~~~i~D~i~Ry~rm-~G~~Vl~~~G 220 (1107)
|||.|||||.++.+ ..|.+| .|+++.+..+
T Consensus 24 PTG~lHLGh~vg~l-----~~~~~lQ~~~~~~~~ia 54 (346)
T 3n9i_A 24 PSGELTIGNYMGAL-----RQWVQMQDDYDCIYCIV 54 (346)
T ss_dssp SCSCCBHHHHHHTH-----HHHHTTTTTSEEEEEEC
T ss_pred CCCcccHHHHHHHH-----HHHHHHHhhCcEEEEEe
Confidence 48999999987653 233333 3677766655
No 136
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=32.63 E-value=1.8e+02 Score=26.70 Aligned_cols=42 Identities=7% Similarity=0.132 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHH
Q 001289 1050 KLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQ 1091 (1107)
Q Consensus 1050 kl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~ 1091 (1107)
-...++.-+-.+++.|..+.|..+++++.++..++++.+++.
T Consensus 10 akN~lEs~iy~~e~~l~e~~~~~kl~~eek~~i~~~i~e~~~ 51 (113)
T 3lof_A 10 AKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVIS 51 (113)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGBTTBCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHH
Confidence 345677777888888987778899999988888877776644
No 137
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=32.41 E-value=97 Score=36.68 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=22.2
Q ss_pred hcCCCCccEEEEcceeeCCCCccccccCCCc
Q 001289 680 LGGEVPFTKVYLHPMIRDAHGRKMSKSLGNV 710 (1107)
Q Consensus 680 l~g~~PFk~V~~Hg~v~D~~G~KMSKSlGNv 710 (1107)
|.-..| ...-|++|+|.+|+|+||+.|..
T Consensus 253 lg~~~P--~y~H~pli~~~~g~kLSKR~~~~ 281 (512)
T 4gri_A 253 FKWKPP--IYCHLPMVMGNDGQKLSKRHGST 281 (512)
T ss_dssp HTCCCC--EEEEECCCBCTTSSBCCTTTSCC
T ss_pred cCCCCC--eEEecchhccccccccCcccccc
Confidence 333445 56667999999999999998764
No 138
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=32.24 E-value=78 Score=41.05 Aligned_cols=54 Identities=19% Similarity=0.402 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001289 1041 EAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLG 1104 (1107)
Q Consensus 1041 ~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~~l~ 1104 (1107)
++|++.++++++++.++.+.++.+.. +..+.-++|+.++++|...|++++..++
T Consensus 990 ~~e~~~l~~~~~~~~ke~~~lee~~~----------~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 990 QEEIAKLRKELHQTQTEKKTIEEWAD----------KYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444332 2334555777788888888888777765
No 139
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=31.53 E-value=1.2e+02 Score=29.04 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001289 1042 AEREKIRTKLTETQKQREKLEKIINA 1067 (1107)
Q Consensus 1042 ~Ei~kL~kkl~kl~k~i~~l~~~l~~ 1067 (1107)
++...|+++++.+++++..+++.+..
T Consensus 6 ~~~~~l~~KvAElekkv~~lek~lk~ 31 (125)
T 2pms_C 6 AEEVAPQAKIAELENQVHRLEQELKE 31 (125)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHTTT
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 33456778888888888888777764
No 140
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=31.31 E-value=17 Score=41.68 Aligned_cols=61 Identities=13% Similarity=0.146 Sum_probs=37.8
Q ss_pred HHHhcCCcccCCC--------CCCCcEEEECCCCCCCC-CCCchhhHHhHHHHHHHHHHHhcCCeeeeccCCCc
Q 001289 159 WWENSGYFIADNK--------SSKPSFVIVLPPPNVTG-ALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1107)
Q Consensus 159 ~W~~~~~f~~~~~--------~~k~~f~i~~pPPyvnG-~LHiGHal~~~i~D~i~Ry~rm~G~~Vl~~~G~D~ 223 (1107)
.+...|+|-...+ ..+++|.+.+|. -||| .|||||.... ..+.++++.-|..+.+..|=++
T Consensus 53 ~~~~RG~~~~~~d~~~~l~~~~~~~~~~vy~G~-~PTg~~lHLGh~v~~---~~~~~lQ~~~~~~v~i~I~D~~ 122 (395)
T 3i05_A 53 HFLRRGIFFSHRDLNLLLDVYESGQPFYLYTGR-GPSSESMHMGHLIPF---MFTKWLQDSFRVPLVIQMTDDE 122 (395)
T ss_dssp HHHHTTSEEEEESHHHHHHHHHTTCCEEEEEEE-CCCSSCCBGGGSHHH---HHHHHHHHHHTCCEEEEECHHH
T ss_pred HHHhcCCccccccHHHHHHHHhcCCCeEEEEee-cCCCccchHHHHHHH---HHHHHHHHhcCCcEEEEEcchH
Confidence 3456677743322 123467777763 5699 7999998654 2344466666888877766544
No 141
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=28.48 E-value=27 Score=31.25 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001289 1046 KIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRL 1103 (1107)
Q Consensus 1046 kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~~l 1103 (1107)
+.+++++.+...|++++..+..=. ..-+.+++-..+-.++..+..++..++..|..+
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le-~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQ-TQVADASFFSQPHEQTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHhCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666655311 111223333334556666666666666655543
No 142
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=27.64 E-value=1.8e+02 Score=26.65 Aligned_cols=61 Identities=16% Similarity=0.253 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccc-----------CC----HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001289 1041 EAEREKIRTKLTETQKQREKLEKIINAPGYQEK-----------VP----SRIQEDNAAKLAKLLQEIDFFENESNRLG 1104 (1107)
Q Consensus 1041 ~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~K-----------aP----~~v~e~~~~Kl~~~~~el~~l~~~l~~l~ 1104 (1107)
..++.+|..++..++.+++.+++.+.. .++ .. .++++..+.++.++..++..+.+.+..++
T Consensus 16 ~~~l~~L~~~~~~l~~~i~~l~~~l~~---l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~ 91 (112)
T 1l8d_A 16 EEERNEITQRIGELKNKIGDLKTAIEE---LKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELE 91 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---hhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555542 111 11 24666777777777777777777766654
No 143
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=27.16 E-value=2.6e+02 Score=26.68 Aligned_cols=59 Identities=20% Similarity=0.249 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001289 1044 REKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNR 1102 (1107)
Q Consensus 1044 i~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~~ 1102 (1107)
++.|+++++.++..+..++.-+.+-.=...+-..+.+.-+.+++.-++|+++.+..+..
T Consensus 63 leeL~~ki~eL~~kvA~le~e~~~~e~~~~~~~~~~e~le~~la~KkAEleKtqa~Ld~ 121 (125)
T 2pms_C 63 LEELSDKIDELDAEIAKLEDQLKAAEENNNVEDYFKEGLEKTIAAKKAELEKTEADLKK 121 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999988643344566677888899999999999888877654
No 144
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=26.68 E-value=65 Score=31.13 Aligned_cols=16 Identities=6% Similarity=0.050 Sum_probs=6.4
Q ss_pred eeeeecCCCCcccccc
Q 001289 313 RLVNWDCVLRTAISDI 328 (1107)
Q Consensus 313 ~~V~W~p~~~TaLsd~ 328 (1107)
.+-.|||.|..-+...
T Consensus 38 ~~~~~c~~C~~e~~~l 53 (157)
T 4g2e_A 38 YPAAFTQVCTKEMCTF 53 (157)
T ss_dssp CSCTTCCC------CC
T ss_pred cCCCCCCccccchhhc
Confidence 3456899887665554
No 145
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=24.82 E-value=95 Score=28.60 Aligned_cols=61 Identities=11% Similarity=0.228 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC--cCccccCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHh
Q 001289 1042 AEREKIRTKLTETQKQREKLEKIINA--PGYQEKVPSRIQ----EDNAAKLAKLLQEIDFFENESNRL 1103 (1107)
Q Consensus 1042 ~Ei~kL~kkl~kl~k~i~~l~~~l~~--~~f~~KaP~~v~----e~~~~Kl~~~~~el~~l~~~l~~l 1103 (1107)
..+++|++++...++++.-.+.||.. ..| ++-|.+|. ++.+.-...++.+|..++..|+..
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~-E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEKAV-EVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777776666666653 223 45566653 344444455666666666666554
No 146
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=24.71 E-value=2e+02 Score=26.73 Aligned_cols=41 Identities=12% Similarity=0.163 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHH
Q 001289 1051 LTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQ 1091 (1107)
Q Consensus 1051 l~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~ 1091 (1107)
...++.-+-.+++.|..+.|..+++++.++..++.+.+++.
T Consensus 20 rN~aEsliy~~e~~L~e~~~~dkl~~eek~~I~~~i~el~~ 60 (120)
T 2p32_A 20 HMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILK 60 (120)
T ss_dssp HHHHHHHHHHHHHHHTCTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHH
Confidence 35566677777888876667788898888887777776653
No 147
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.16 E-value=1.8e+02 Score=26.58 Aligned_cols=27 Identities=11% Similarity=0.383 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001289 1040 IEAEREKIRTKLTETQKQREKLEKIIN 1066 (1107)
Q Consensus 1040 ~~~Ei~kL~kkl~kl~k~i~~l~~~l~ 1066 (1107)
+..++.+|+.++.....++.+|...+.
T Consensus 10 lre~l~~le~~~~~~~~e~~~L~~~l~ 36 (97)
T 2eqb_B 10 LKEDYNTLKRELSDRDDEVKRLREDIA 36 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 344555555555555555555554444
No 148
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=23.70 E-value=2e+02 Score=26.23 Aligned_cols=21 Identities=14% Similarity=0.384 Sum_probs=9.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHH
Q 001289 1039 DIEAEREKIRTKLTETQKQRE 1059 (1107)
Q Consensus 1039 D~~~Ei~kL~kkl~kl~k~i~ 1059 (1107)
|++.||++|+++++.++.-..
T Consensus 51 eL~~EI~~L~~eI~~LE~iqs 71 (96)
T 1t3j_A 51 HLEEEIARLSKEIDQLEKMQN 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555544444333
No 149
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=23.70 E-value=2.1e+02 Score=26.01 Aligned_cols=57 Identities=18% Similarity=0.234 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001289 1041 EAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLG 1104 (1107)
Q Consensus 1041 ~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~~l~ 1104 (1107)
+.|+.-|++++..++.++++.+..+..- ..-.+....+..+.+.+.+.|+..|..++
T Consensus 43 E~ei~sL~kKiq~lE~eld~~~e~l~~a-------~~kLe~~ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 43 EEEQQGLQKKLKGTEDEVEKYSESVKEA-------QEKLEQAEKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455556666666666666555554421 12234455666778888888888887775
No 150
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=22.83 E-value=1.9e+02 Score=33.18 Aligned_cols=60 Identities=20% Similarity=0.302 Sum_probs=38.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001289 1038 VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRL 1103 (1107)
Q Consensus 1038 iD~~~Ei~kL~kkl~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~el~~l~~~l~~l 1103 (1107)
+.++.+...+..+++.++.+...+.+.+.. +..++ .++-.++..++.++++.+++.+..+
T Consensus 31 ~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~-----~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~ 90 (421)
T 1ses_A 31 LALDREVQELKKRLQEVQTERNQVAKRVPK-----APPEE-KEALIARGKALGEEAKRLEEALREK 90 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-----SCHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hcccc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999999999999999885 22222 2233344444444444444444433
No 151
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=21.95 E-value=1.1e+02 Score=29.82 Aligned_cols=26 Identities=19% Similarity=0.149 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001289 1078 IQEDNAAKLAKLLQEIDFFENESNRL 1103 (1107)
Q Consensus 1078 v~e~~~~Kl~~~~~el~~l~~~l~~l 1103 (1107)
-.+.-++++..++.++.+++..+...
T Consensus 111 e~~~l~~~~~~l~~~~~~le~~~~~~ 136 (138)
T 3hnw_A 111 EIKELKSEINKYQKNIVKLETELNDS 136 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556777888899999988877653
No 152
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=21.78 E-value=1.4e+02 Score=27.41 Aligned_cols=41 Identities=7% Similarity=0.067 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHH
Q 001289 1051 LTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQ 1091 (1107)
Q Consensus 1051 l~kl~k~i~~l~~~l~~~~f~~KaP~~v~e~~~~Kl~~~~~ 1091 (1107)
...++.-+-.+++.|..+.|..+++++.++..++.+.+++.
T Consensus 6 rN~aE~~iy~~e~~L~~~e~~~kl~~~ek~~i~~~i~~l~~ 46 (113)
T 1ud0_A 6 SHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIIS 46 (113)
T ss_dssp HHHHHHHHHHHHHHHTSGGGTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHH
Confidence 35566667777777765557778888887777777766553
No 153
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=21.77 E-value=39 Score=22.85 Aligned_cols=21 Identities=5% Similarity=0.300 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001289 1040 IEAEREKIRTKLTETQKQREK 1060 (1107)
Q Consensus 1040 ~~~Ei~kL~kkl~kl~k~i~~ 1060 (1107)
+++...||+|+..|++.++.+
T Consensus 6 ldanvkrlekevgklegevar 26 (28)
T 4dac_A 6 LDANVKRLEKEVGKLEGEVAR 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT
T ss_pred ccccHHHHHHHHhhhhhhhhh
Confidence 466777888888887777654
No 154
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=21.03 E-value=2.5e+02 Score=25.91 Aligned_cols=60 Identities=13% Similarity=0.167 Sum_probs=45.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcCcccc----CCHHHHHHHHHHHHHHHHHHHHHHH
Q 001289 1039 DIEAEREKIRTKLTETQKQREKLEKII-NAPGYQEK----VPSRIQEDNAAKLAKLLQEIDFFEN 1098 (1107)
Q Consensus 1039 D~~~Ei~kL~kkl~kl~k~i~~l~~~l-~~~~f~~K----aP~~v~e~~~~Kl~~~~~el~~l~~ 1098 (1107)
++..|+...+++|.-+++.++.-++.. .+|+=++| .-..+|..-+.|+++++..++..-.
T Consensus 39 eLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 39 ELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999888877766655543 45666666 4677889999999999998876544
Done!