BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001290
(1106 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 240 bits (612), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 145/349 (41%), Positives = 201/349 (57%), Gaps = 17/349 (4%)
Query: 19 GQEERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLERSVYPPAYTFDRVFGC 78
+E + V VR+RPLN +E + + + +N+++++ ++ S ++ FDRVF
Sbjct: 1 AEEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQ---VDGS---KSFNFDRVFHG 54
Query: 79 ECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGG------ITEYAIQDIYD 132
T+ VYEE A + S + G N T FAYGQT+SGKTYTM G + AI DI+
Sbjct: 55 NETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQ 114
Query: 133 YIDTHQEREFVLKFSAMEIYNESVRDLL--STDSTPLRLLDDPEKGXXXXXXXXXXXXDM 190
I +REF+L+ S MEIYNE++ DLL + PL + +D +
Sbjct: 115 KIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYTS 174
Query: 191 SHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNFVD 250
++ + E R GET +N+ SSRSH I R+ +ES + S+ + +N VD
Sbjct: 175 EMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVD 234
Query: 251 LAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGR-NAHIPYRDSKLTRILQNS 309
LAGSERA+QT AG RLKEG +INRSL LG VI+KLS G+ I YRDSKLTRILQNS
Sbjct: 235 LAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNS 294
Query: 310 LGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVATNAQVNVVMSDK 358
LGGNA+T IICT++P +++ L FAS AK + VN V +D+
Sbjct: 295 LGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTDE 341
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 228 bits (582), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 142/359 (39%), Positives = 200/359 (55%), Gaps = 16/359 (4%)
Query: 19 GQEERILVFVRLRPLNEKEYAR--NDVSDWECINNNSIVFKNSLLERSVYPPAYTFDRVF 76
G E + V VR RP+N KE A + V D + + + KN P +TFD V+
Sbjct: 18 GSSESVRVVVRCRPMNGKEKAASYDKVVDVD-VKLGQVSVKNPKGTAHEMPKTFTFDAVY 76
Query: 77 GCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGI-----TEYAIQDIY 131
++Y+E + + SV+ G N T FAYGQT +GKTYTM GI I + +
Sbjct: 77 DWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSF 136
Query: 132 DYIDTH----QEREFVLKFSAMEIYNESVRDLLSTDSTP-LRLLDDPEKGXXXXXXXXXX 186
D+I TH Q ++++++ S +EIY E +RDLLS D T L L + P+ G
Sbjct: 137 DHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLELKERPDTGVYVKDLSSFV 196
Query: 187 XXDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASV 246
+ + ++ V R +G T +NE SSRSH I +TIE S E G + I +
Sbjct: 197 TKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECS--EVGLDGENHIRVGKL 254
Query: 247 NFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRIL 306
N VDLAGSER ++T G RLKE + IN SL LG VI L G++ HIPYRDSKLTR+L
Sbjct: 255 NLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLL 314
Query: 307 QNSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVATNAQVNVVMSDKALVKQLQ 365
Q+SLGGNA+T ++ + PA +VE++ TL +A+ AK + +VN D AL+++ Q
Sbjct: 315 QDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKD-ALLREFQ 372
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 204 bits (520), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 129/343 (37%), Positives = 180/343 (52%), Gaps = 25/343 (7%)
Query: 21 EERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLERSVYPPAYTFDRVFGCEC 80
E I V R RPLNE E R D + +++V + Y FDRVF
Sbjct: 6 ECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVV---------IASKPYAFDRVFQSST 56
Query: 81 PTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM---------GGITEYAIQDIY 131
QVY + AK++ V+ G N T FAYGQTSSGKT+TM GI +QDI+
Sbjct: 57 SQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIF 116
Query: 132 DYIDTHQER-EFVLKFSAMEIYNESVRDLLSTDSTPLRLLDDPEKGXXXXXXXXXXXXDM 190
+YI + E EF +K S EIY + +RDLL T L + +D +
Sbjct: 117 NYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSP 176
Query: 191 SHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNFVD 250
+M+ + ++ R + T +NE SSRSH I + ++ + LS + VD
Sbjct: 177 DEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQ-----TEQKLSGKLYLVD 231
Query: 251 LAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSL 310
LAGSE+ S+T GA L E +IN+SL LG VI L++G + ++PYRDSK+TRILQ+SL
Sbjct: 232 LAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEG-STYVPYRDSKMTRILQDSL 290
Query: 311 GGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVATNAQVNV 353
GGN RT I+ SP+ + ++++TLLF AK + VNV
Sbjct: 291 GGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVNV 333
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 204 bits (518), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 130/369 (35%), Positives = 183/369 (49%), Gaps = 37/369 (10%)
Query: 19 GQEERILVFVRLRPLNEKEYARNDVSDWEC-INNNSIVFKNSLLERSVYPPAYTFDRVFG 77
G E + V R RPL+ KE A + + +N P +TFD V+
Sbjct: 18 GASEALKVVARCRPLSRKEEAAGHEQILTMDVKLGQVTLRNPRAAPGELPKTFTFDAVYD 77
Query: 78 CECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGG---------ITEYAIQ 128
+Y+E + + SV+ G N T FAYGQT +GKTYTM G + A +
Sbjct: 78 ASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELRGVIPNAFE 137
Query: 129 DIYDYIDTHQEREFVLKFSAMEIYNESVRDLLSTD-STPLRLLDDPEKGXXXXXXXXXXX 187
I+ +I Q ++++++ S +EIY E +RDLLS + L L ++PE G
Sbjct: 138 HIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKEPGKRLELKENPETGVYIKDLSSFVT 197
Query: 188 XDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVN 247
++ + ++ + R +G T +NE SSRSH I +T+E S R G I +N
Sbjct: 198 KNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERG--SDGQDHIRVGKLN 255
Query: 248 FVDLAGSER---ASQTLNAGA---------------------RLKEGSHINRSLLTLGTV 283
VDLAGSER A GA R KE S IN SL LG V
Sbjct: 256 LVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSALGNV 315
Query: 284 IRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAK 343
I L+ R+ HIPYRDSKLTR+LQ+SLGGNA+T ++ T+ PA ++S +TL FA+ AK
Sbjct: 316 IAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFANRAK 375
Query: 344 EVATNAQVN 352
+ +VN
Sbjct: 376 NIKNKPRVN 384
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 201 bits (512), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 127/343 (37%), Positives = 179/343 (52%), Gaps = 25/343 (7%)
Query: 21 EERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLERSVYPPAYTFDRVFGCEC 80
E I V R RPLNE E R D + ++++ + Y FDRVF
Sbjct: 6 ECNIKVMCRFRPLNESEVNRGDKYVAKFQGEDTVM---------IASKPYAFDRVFQSST 56
Query: 81 PTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM---------GGITEYAIQDIY 131
QVY + AK++ V+ G N T FAYGQTSSGK +TM GI +QDI+
Sbjct: 57 SQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGIIPRIVQDIF 116
Query: 132 DYIDTHQER-EFVLKFSAMEIYNESVRDLLSTDSTPLRLLDDPEKGXXXXXXXXXXXXDM 190
+YI + E EF +K S EIY + +RDLL T L + +D +
Sbjct: 117 NYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSP 176
Query: 191 SHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNFVD 250
+M+ + ++ R + T +NE SSRSH I + ++ + LS + VD
Sbjct: 177 DEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQ-----TEQKLSGKLYLVD 231
Query: 251 LAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSL 310
LAGSE+ S+T GA L E +IN+SL LG VI L++G + ++PYRDSK+TRILQ+SL
Sbjct: 232 LAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEG-STYVPYRDSKMTRILQDSL 290
Query: 311 GGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVATNAQVNV 353
GGN RT I+ SP+ + ++++TLLF AK + VNV
Sbjct: 291 GGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVNV 333
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 200 bits (509), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 126/335 (37%), Positives = 177/335 (52%), Gaps = 25/335 (7%)
Query: 21 EERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLERSVYPPAYTFDRVFGCEC 80
E I V R RPLNE E R D + +++V + Y FDRVF
Sbjct: 6 ECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVV---------IASKPYAFDRVFQSST 56
Query: 81 PTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM---------GGITEYAIQDIY 131
QVY + AK++ V+ G N T FAYGQTSSGKT+TM GI +QDI+
Sbjct: 57 SQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIF 116
Query: 132 DYIDTHQER-EFVLKFSAMEIYNESVRDLLSTDSTPLRLLDDPEKGXXXXXXXXXXXXDM 190
+YI + E EF +K S EIY + +RDLL T L + +D +
Sbjct: 117 NYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSP 176
Query: 191 SHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNFVD 250
+M+ + ++ R + T +NE SSRSH I + ++ + LS + VD
Sbjct: 177 DEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQ-----TEQKLSGKLYLVD 231
Query: 251 LAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSL 310
LAGSE+ S+T GA L E +IN+SL LG VI L++G + ++PYRDSK+TRILQ+SL
Sbjct: 232 LAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEG-STYVPYRDSKMTRILQDSL 290
Query: 311 GGNARTAIICTMSPARSHVEQSRNTLLFASCAKEV 345
GGN RT I+ SP+ + ++++TLLF AK +
Sbjct: 291 GGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 200 bits (509), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 134/360 (37%), Positives = 185/360 (51%), Gaps = 27/360 (7%)
Query: 21 EERILVFVRLRPLNEKEYARNDVSDWECINNNSIV-FKNSLLER--SVYPPAYTFDRVFG 77
E+ I V R RPLN+ E E + +V F N++ E S+ Y FD+VF
Sbjct: 10 EDSIKVVCRFRPLNDSE---------EKAGSKFVVKFPNNVEENCISIAGKVYLFDKVFK 60
Query: 78 CECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM---------GGITEYAIQ 128
+VY EAAK + V+ G N T FAYGQTSSGKT+TM GI +
Sbjct: 61 PNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVN 120
Query: 129 DIYDYIDTHQ-EREFVLKFSAMEIYNESVRDLLSTDSTPLRLLDDPEKGXXXXXXXXXXX 187
DI+++I + EF +K S EIY + +RDLL L + +D +
Sbjct: 121 DIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGATERFV 180
Query: 188 XDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVN 247
+ E++ ++ R I T +NE SSRSH + + ++ E N LS +
Sbjct: 181 SSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLE-----NQKKLSGKLY 235
Query: 248 FVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQ 307
VDLAGSE+ S+T G L E +IN+SL LG VI L+ G HIPYRDSKLTRILQ
Sbjct: 236 LVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQ 295
Query: 308 NSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVATNAQVNVVMSDKALVKQLQKE 367
SLGGNART I+ SPA + ++++TL F AK V VN ++ + ++ +KE
Sbjct: 296 ESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKE 355
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 192 bits (488), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 125/348 (35%), Positives = 190/348 (54%), Gaps = 26/348 (7%)
Query: 22 ERILVFVRLRPLNEKEYARNDVSDWECINNNSIVF------KNSLLERSVYPPAYTFDRV 75
+ I V VR RPLN +E N ++ ++ V + S + P +TFD V
Sbjct: 4 DNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAV 63
Query: 76 FGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGITE------YAIQD 129
+ +++ + K + +V+ G NST FAYGQT +GKT+TMGG E + +
Sbjct: 64 YDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKH 123
Query: 130 IYDYIDTHQERE-FVLKFSAMEIYNESVRDLLSTDSTPLRLLDDPEKGXXXXXXXXXXXX 188
++D I++ + F++ S +E+YNE +RDL+ ++T L L +D +G
Sbjct: 124 LFDAINSSSSNQNFLVIGSYLELYNEEIRDLIK-NNTKLPLKEDKTRGIYVDGLSMHRVT 182
Query: 189 DMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESS----AREYLGAGNSSILSA 244
+ L L+ A R + T +N+TSSRSH I + IE S +E + G
Sbjct: 183 TAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVG------- 235
Query: 245 SVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTR 304
+N VDLAGSER S+T G L EG+ IN SL LG VI KL +G HIPYRDSKLTR
Sbjct: 236 KLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGA-THIPYRDSKLTR 294
Query: 305 ILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVATNAQVN 352
+LQ+SLGGN++T + +SPA ++ +++ +TL +A AK++ ++N
Sbjct: 295 LLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRIN 342
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 190 bits (483), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 127/352 (36%), Positives = 184/352 (52%), Gaps = 27/352 (7%)
Query: 22 ERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLERSVYPPAYTFDRVFGCECP 81
+ I V+VR+RPLN +E + + +V +++L S +TFDR FG E
Sbjct: 23 QNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTL--DSKLTKKFTFDRSFGPESK 80
Query: 82 TRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGG-----------------ITE 124
VY + V+NG N T FAYGQT +GKT+TM G I
Sbjct: 81 QCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIP 140
Query: 125 YAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLLSTD-STPLRLLDDPEKGXXXXXXX 183
A+ ++D + E E+ ++ S +E+YNE + DLLSTD +T +R+ DD K
Sbjct: 141 RALSHLFDELRM-MEVEYTMRISYLELYNEELCDLLSTDDTTKIRIFDDSTKKGSVIIQG 199
Query: 184 XXXXXDMSH--LMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSI 241
S + +LL + +R+ T +N SSRSH + + + RE G +
Sbjct: 200 LEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVH--IRENGIEGEDML 257
Query: 242 LSASVNFVDLAGSERASQTLN-AGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDS 300
+N VDLAGSE S+ N G R++E +IN+SLLTLG VI L R H+PYR+S
Sbjct: 258 KIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVD-RAPHVPYRES 316
Query: 301 KLTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVATNAQVN 352
KLTR+LQ SLGG +T+II T+SP +E++ +TL +A AK + +VN
Sbjct: 317 KLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVN 368
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 188 bits (477), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 127/353 (35%), Positives = 185/353 (52%), Gaps = 29/353 (8%)
Query: 24 ILVFVRLRPLN--EKEYARNDVSDWECINNNSIVFKNSLLERSVYPPAYTFDRVFGCECP 81
I V VR+RP N E++ + + + + + + V L ++S YTFD VFG
Sbjct: 19 IQVVVRVRPFNLAERKASAHSIVESDPVRKEVSVRTGGLADKSSRK-TYTFDMVFGASTK 77
Query: 82 TRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM-----------------GGITE 124
VY + V+ G N+T FAYGQT +GKT+TM GI
Sbjct: 78 QIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPLAGIIP 137
Query: 125 YAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLL--STD-STPLRLLDDP--EKGXXX 179
+ I++ + T EF +K S +EIYNE + DLL S+D S L++ DDP ++G
Sbjct: 138 RTLHQIFEKL-TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVII 196
Query: 180 XXXXXXXXXDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNS 239
+ + ++L A+R T +N SSRSH + +TI +E G
Sbjct: 197 KGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH--MKETTIDGEE 254
Query: 240 SILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRD 299
+ +N VDLAGSE ++ R +E +IN+SLLTLG VI L + R H+PYR+
Sbjct: 255 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRE 313
Query: 300 SKLTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVATNAQVN 352
SKLTRILQ+SLGG RT+II T+SPA ++E++ +TL +A AK + +VN
Sbjct: 314 SKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 186 bits (472), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 130/353 (36%), Positives = 180/353 (50%), Gaps = 29/353 (8%)
Query: 24 ILVFVRLRPLNEKEYARNDVSDWEC--INNNSIVFKNSLLERSVYPPAYTFDRVFGCECP 81
I V VR RP N E + S EC + V L ++S YTFD VFG
Sbjct: 21 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRK-TYTFDMVFGASTK 79
Query: 82 TRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM-----------------GGITE 124
VY + V+ G N T FAYGQT +GKT+TM GI
Sbjct: 80 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 139
Query: 125 YAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLL--STD-STPLRLLDDP--EKGXXX 179
+ I++ + T EF +K S +EIYNE + DLL S+D S L++ DDP ++G
Sbjct: 140 RTLHQIFEKL-TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVII 198
Query: 180 XXXXXXXXXDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNS 239
+ + ++L A+R T +N SSRSH + +TI +E G
Sbjct: 199 KGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH--MKETTIDGEE 256
Query: 240 SILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRD 299
+ +N VDLAGSE ++ R +E +IN+SLLTLG VI L + R H+PYR+
Sbjct: 257 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRE 315
Query: 300 SKLTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVATNAQVN 352
SKLTRILQ+SLGG RT+II T+SPA ++E++ +TL +A AK + +VN
Sbjct: 316 SKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 368
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 186 bits (472), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 130/353 (36%), Positives = 180/353 (50%), Gaps = 29/353 (8%)
Query: 24 ILVFVRLRPLNEKEYARNDVSDWEC--INNNSIVFKNSLLERSVYPPAYTFDRVFGCECP 81
I V VR RP N E + S EC + V L ++S YTFD VFG
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRK-TYTFDMVFGASTK 77
Query: 82 TRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM-----------------GGITE 124
VY + V+ G N T FAYGQT +GKT+TM GI
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 137
Query: 125 YAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLL--STD-STPLRLLDDP--EKGXXX 179
+ I++ + T EF +K S +EIYNE + DLL S+D S L++ DDP ++G
Sbjct: 138 RTLHQIFEKL-TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVII 196
Query: 180 XXXXXXXXXDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNS 239
+ + ++L A+R T +N SSRSH + +TI +E G
Sbjct: 197 KGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH--MKETTIDGEE 254
Query: 240 SILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRD 299
+ +N VDLAGSE ++ R +E +IN+SLLTLG VI L + R H+PYR+
Sbjct: 255 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRE 313
Query: 300 SKLTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVATNAQVN 352
SKLTRILQ+SLGG RT+II T+SPA ++E++ +TL +A AK + +VN
Sbjct: 314 SKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 186 bits (471), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 130/353 (36%), Positives = 180/353 (50%), Gaps = 29/353 (8%)
Query: 24 ILVFVRLRPLNEKEYARNDVSDWEC--INNNSIVFKNSLLERSVYPPAYTFDRVFGCECP 81
I V VR RP N E + S EC + V L ++S YTFD VFG
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRK-TYTFDMVFGASTK 77
Query: 82 TRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM-----------------GGITE 124
VY + V+ G N T FAYGQT +GKT+TM GI
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEVPLAGIIP 137
Query: 125 YAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLL--STD-STPLRLLDDP--EKGXXX 179
+ I++ + T EF +K S +EIYNE + DLL S+D S L++ DDP ++G
Sbjct: 138 RTLHQIFEKL-TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVII 196
Query: 180 XXXXXXXXXDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNS 239
+ + ++L A+R T +N SSRSH + +TI +E G
Sbjct: 197 KGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH--MKETTIDGEE 254
Query: 240 SILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRD 299
+ +N VDLAGSE ++ R +E +IN+SLLTLG VI L + R H+PYR+
Sbjct: 255 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRE 313
Query: 300 SKLTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVATNAQVN 352
SKLTRILQ+SLGG RT+II T+SPA ++E++ +TL +A AK + +VN
Sbjct: 314 SKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 186 bits (471), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 130/353 (36%), Positives = 180/353 (50%), Gaps = 29/353 (8%)
Query: 24 ILVFVRLRPLNEKEYARNDVSDWEC--INNNSIVFKNSLLERSVYPPAYTFDRVFGCECP 81
I V VR RP N E + S EC + V L ++S YTFD VFG
Sbjct: 18 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRK-TYTFDMVFGASTK 76
Query: 82 TRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM-----------------GGITE 124
VY + V+ G N T FAYGQT +GKT+TM GI
Sbjct: 77 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 136
Query: 125 YAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLL--STD-STPLRLLDDP--EKGXXX 179
+ I++ + T EF +K S +EIYNE + DLL S+D S L++ DDP ++G
Sbjct: 137 RTLHQIFEKL-TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVII 195
Query: 180 XXXXXXXXXDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNS 239
+ + ++L A+R T +N SSRSH + +TI +E G
Sbjct: 196 KGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH--MKETTIDGEE 253
Query: 240 SILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRD 299
+ +N VDLAGSE ++ R +E +IN+SLLTLG VI L + R H+PYR+
Sbjct: 254 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRE 312
Query: 300 SKLTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVATNAQVN 352
SKLTRILQ+SLGG RT+II T+SPA ++E++ +TL +A AK + +VN
Sbjct: 313 SKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 365
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 185 bits (470), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 130/353 (36%), Positives = 180/353 (50%), Gaps = 29/353 (8%)
Query: 24 ILVFVRLRPLNEKEYARNDVSDWEC--INNNSIVFKNSLLERSVYPPAYTFDRVFGCECP 81
I V VR RP N E + S EC + V L ++S YTFD VFG
Sbjct: 10 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRK-TYTFDMVFGASTK 68
Query: 82 TRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM-----------------GGITE 124
VY + V+ G N T FAYGQT +GKT+TM GI
Sbjct: 69 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 128
Query: 125 YAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLL--STD-STPLRLLDDP--EKGXXX 179
+ I++ + T EF +K S +EIYNE + DLL S+D S L++ DDP ++G
Sbjct: 129 RTLHQIFEKL-TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVII 187
Query: 180 XXXXXXXXXDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNS 239
+ + ++L A+R T +N SSRSH + +TI +E G
Sbjct: 188 KGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH--MKETTIDGEE 245
Query: 240 SILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRD 299
+ +N VDLAGSE ++ R +E +IN+SLLTLG VI L + R H+PYR+
Sbjct: 246 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRE 304
Query: 300 SKLTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVATNAQVN 352
SKLTRILQ+SLGG RT+II T+SPA ++E++ +TL +A AK + +VN
Sbjct: 305 SKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 357
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 185 bits (470), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 130/353 (36%), Positives = 180/353 (50%), Gaps = 29/353 (8%)
Query: 24 ILVFVRLRPLNEKEYARNDVSDWEC--INNNSIVFKNSLLERSVYPPAYTFDRVFGCECP 81
I V VR RP N E + S EC + V L ++S YTFD VFG
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRK-TYTFDMVFGASTK 77
Query: 82 TRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM-----------------GGITE 124
VY + V+ G N T FAYGQT +GKT+TM GI
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 137
Query: 125 YAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLL--STD-STPLRLLDDP--EKGXXX 179
+ I++ + T EF +K S +EIYNE + DLL S+D S L++ DDP ++G
Sbjct: 138 RTLHQIFEKL-TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVII 196
Query: 180 XXXXXXXXXDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNS 239
+ + ++L A+R T +N SSRSH + +TI +E G
Sbjct: 197 KGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH--MKETTIDGEE 254
Query: 240 SILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRD 299
+ +N VDLAGSE ++ R +E +IN+SLLTLG VI L + R H+PYR+
Sbjct: 255 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRE 313
Query: 300 SKLTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVATNAQVN 352
SKLTRILQ+SLGG RT+II T+SPA ++E++ +TL +A AK + +VN
Sbjct: 314 SKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 185 bits (469), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 130/353 (36%), Positives = 180/353 (50%), Gaps = 29/353 (8%)
Query: 24 ILVFVRLRPLNEKEYARNDVSDWEC--INNNSIVFKNSLLERSVYPPAYTFDRVFGCECP 81
I V VR RP N E + S EC + V L ++S YTFD VFG
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRK-TYTFDMVFGASTK 77
Query: 82 TRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM-----------------GGITE 124
VY + V+ G N T FAYGQT +GKT+TM GI
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLDGIIP 137
Query: 125 YAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLL--STD-STPLRLLDDP--EKGXXX 179
+ I++ + T EF +K S +EIYNE + DLL S+D S L++ DDP ++G
Sbjct: 138 RTLHQIFEKL-TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVII 196
Query: 180 XXXXXXXXXDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNS 239
+ + ++L A+R T +N SSRSH + +TI +E G
Sbjct: 197 KGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH--MKETTIDGEE 254
Query: 240 SILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRD 299
+ +N VDLAGSE ++ R +E +IN+SLLTLG VI L + R H+PYR+
Sbjct: 255 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRE 313
Query: 300 SKLTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVATNAQVN 352
SKLTRILQ+SLGG RT+II T+SPA ++E++ +TL +A AK + +VN
Sbjct: 314 SKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 185 bits (469), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 110/309 (35%), Positives = 165/309 (53%), Gaps = 16/309 (5%)
Query: 69 AYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGG------- 121
++TFDRVF C +++ + K ++NG N T FAYGQT +GK+YTM G
Sbjct: 48 SFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPD 107
Query: 122 ---ITEYAIQDIYDYI-DTHQEREFVLKFSAMEIYNESVRDLLSTDSTPLRLLDDPEKGX 177
+ ++ I+ I + E+ ++ S MEIY E +RDLL+ + L + ++ +G
Sbjct: 108 GRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGV 167
Query: 178 XXXXXXXXXXXDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAG 237
+ + E++ R + T +N+ SSRSH I +TI E
Sbjct: 168 YVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVE----- 222
Query: 238 NSSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPY 297
S S + VDLAGSE+ +T +G L+E IN+SL LG VI L+ G+++H+PY
Sbjct: 223 TGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPY 282
Query: 298 RDSKLTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVATNAQVNVVMSD 357
RDSKLTRILQ SLGGN+RT +I SP+ + ++ +TL F AK + A+VN +S
Sbjct: 283 RDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSP 342
Query: 358 KALVKQLQK 366
L + L K
Sbjct: 343 AELKQMLAK 351
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 181 bits (459), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 128/346 (36%), Positives = 177/346 (51%), Gaps = 29/346 (8%)
Query: 24 ILVFVRLRPLNEKEYARNDVSDWEC--INNNSIVFKNSLLERSVYPPAYTFDRVFGCECP 81
I V VR RP N E + S EC + V L ++S YTFD VFG
Sbjct: 4 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRK-TYTFDMVFGASTK 62
Query: 82 TRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM-----------------GGITE 124
VY + V+ G N T FAYGQT +GKT+TM GI
Sbjct: 63 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 122
Query: 125 YAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLL--STD-STPLRLLDDP--EKGXXX 179
+ I++ + T EF +K S +EIYNE + DLL S+D S L++ DDP ++G
Sbjct: 123 RTLHQIFEKL-TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVII 181
Query: 180 XXXXXXXXXDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNS 239
+ + ++L A+R T +N SSRSH + +TI +E G
Sbjct: 182 KGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH--MKETTIDGEE 239
Query: 240 SILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRD 299
+ +N VDLAGSE ++ R +E +IN+SLLTLG VI L + R H+PYR+
Sbjct: 240 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRE 298
Query: 300 SKLTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEV 345
SKLTRILQ+SLGG RT+II T+SPA ++E++ +TL +A AK +
Sbjct: 299 SKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 344
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 180 bits (457), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 117/345 (33%), Positives = 179/345 (51%), Gaps = 28/345 (8%)
Query: 26 VFVRLRPLNEKEYARNDVSDWECINNNSIVF----------------KNSLLERSVYPPA 69
V VR+RP N KE A ++ + +VF +++++
Sbjct: 14 VVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLK 73
Query: 70 YTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM------GGIT 123
+ FD VF +V+E K + S +NG N T AYG T +GKT+TM G+
Sbjct: 74 FVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVM 133
Query: 124 EYAIQDIYDYIDTHQEREFV-LKFSAMEIYNESVRDLLSTDSTPLRLLDDPEKGXXXXXX 182
+ +Y +D +E + S +E+YNE +RDLL +S PL + +D +KG
Sbjct: 134 YLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLL-VNSGPLAVREDTQKGVVVHGL 192
Query: 183 XXXXXXDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSIL 242
++ LL R T +N TSSRSH + ++ + + + N ++
Sbjct: 193 TLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKT--ASINQNVR 250
Query: 243 SASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKL--SKGRNAHIPYRDS 300
A ++ +DLAGSERAS + G R EG++INRSLL LG VI L SK +N HIPYR+S
Sbjct: 251 IAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNS 310
Query: 301 KLTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEV 345
KLTR+L++SLGGN +T +I +SP+ + + NTL +A+ AK++
Sbjct: 311 KLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 180 bits (457), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 123/349 (35%), Positives = 178/349 (51%), Gaps = 26/349 (7%)
Query: 14 LSLTAGQEERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLERSVYPPAYTFD 73
+ L +E + V +R+RPL KE S C+ + + +L R + + F
Sbjct: 3 MGLPGAEEAPVRVALRVRPLLPKELLHGHQS---CLQVEPGLGRVTL-GRDRH---FGFH 55
Query: 74 RVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG------------G 121
V + VY+ + + + G N+T FAYGQT SGKTYTMG G
Sbjct: 56 VVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQG 115
Query: 122 ITEYAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLL--STDSTPLRLLDDPEKGXXX 179
I A+ + + ID + + ++ S +E+Y E RDLL T S ++L +D
Sbjct: 116 IVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVL 175
Query: 180 XXXXXXXXXDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAR---EYLGA 236
+ ++ LL + A R G T LN SSRSH + +T+E R
Sbjct: 176 CGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRP 235
Query: 237 GNSSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLS--KGRNAH 294
+L + +FVDLAGSER +T + G RLKE IN SLL LG VI L + R +H
Sbjct: 236 APGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSH 295
Query: 295 IPYRDSKLTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAK 343
IPYRDSK+TRIL++SLGGNA+T +I +SP+ S +++ NTL +AS A+
Sbjct: 296 IPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 176 bits (445), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 119/354 (33%), Positives = 191/354 (53%), Gaps = 25/354 (7%)
Query: 23 RILVFVRLRPLNEKEYARNDVSDWECINNNSI--VFKNSLLERSVYPPAYTFDRVFGCEC 80
+I V+ R+RPLNEKE + + ++ ++ +K+ ++ +Y DRVF
Sbjct: 14 KIRVYCRIRPLNEKESSEREKQMLTTVDEFTVEHPWKDDKRKQHIY------DRVFDMRA 67
Query: 81 PTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM------GGITEYAIQDIYDYI 134
++E+ K + S V+G N FAYGQT SGKT+T+ G+T A +++++ +
Sbjct: 68 SQDDIFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPGLTPRATKELFNIL 126
Query: 135 DTHQER-EFVLKFSAMEIYNESVRDLLSTDSTPLRLLDDPEKGXXXXXXXXXXXXDMSHL 193
+R F LK +E+Y +++ DLL S L+ + +S L
Sbjct: 127 KRDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGMVFVENVTTIPISTL 186
Query: 194 MELLAVCE---AQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNFVD 250
EL + E +R + T +NE SSRSH IL + IES + S ++FVD
Sbjct: 187 EELRMILERGSERRHVSGTNMNEESSRSHLILSVVIES-----IDLQTQSAARGKLSFVD 241
Query: 251 LAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSL 310
LAGSER ++ +AG +LKE IN+SL LG VI LS G N HIPYR+ KLT ++ +SL
Sbjct: 242 LAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSG-NQHIPYRNHKLTMLMSDSL 300
Query: 311 GGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVATNAQVNVVMSDKALVKQL 364
GGNA+T + +SPA S+++++ N+LL+AS + + + ++ + +K+L
Sbjct: 301 GGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTIVNDPSKHISSKEMVRLKKL 354
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 174 bits (440), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 119/352 (33%), Positives = 183/352 (51%), Gaps = 21/352 (5%)
Query: 23 RILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLERSVYPPAYTFDRVFGCECPT 82
+I V+ RLRPL EKE + + ++ F L + + +DRVF
Sbjct: 6 KIRVYCRLRPLCEKEIIAKERNAIRSVDE----FTVEHLWKDDKAKQHMYDRVFDGNATQ 61
Query: 83 RQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM------GGITEYAIQDIYDYIDT 136
V+E+ K + S V+G N FAYGQT SGKT+T+ G+T A+ +++ +
Sbjct: 62 DDVFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKK 120
Query: 137 HQER-EFVLKFSAMEIYNESVRDLLSTDSTPLRLLDDPEKGXXXXXXXXXXXXDMSHLME 195
+ F LK +E+Y +++ DLL LD + +S E
Sbjct: 121 DSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTYEE 180
Query: 196 LLAVCE---AQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNFVDLA 252
L + + QR T +NE SSRSH I+ + IES+ + +I ++FVDLA
Sbjct: 181 LKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQ-----TQAIARGKLSFVDLA 235
Query: 253 GSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGG 312
GSER ++ +AG +LKE IN+SL LG VI LS G N HIPYR+ KLT ++ +SLGG
Sbjct: 236 GSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSG-NQHIPYRNHKLTMLMSDSLGG 294
Query: 313 NARTAIICTMSPARSHVEQSRNTLLFASCAKEVATNAQVNVVMSDKALVKQL 364
NA+T + +SPA S+++++ N+L +AS + + + NV + A +K+L
Sbjct: 295 NAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKEVARLKKL 346
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 169 bits (429), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 119/349 (34%), Positives = 176/349 (50%), Gaps = 26/349 (7%)
Query: 14 LSLTAGQEERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLERSVYPPAYTFD 73
+ L +E + V +R+RPL KE S C+ + + +L R + + F
Sbjct: 3 MGLPGAEEAPVRVALRVRPLLPKELLHGHQS---CLQVEPGLGRVTL-GRDRH---FGFH 55
Query: 74 RVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG------------G 121
V + VY+ + + + G N+T FAYGQT SGKTYTMG G
Sbjct: 56 VVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQG 115
Query: 122 ITEYAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLL--STDSTPLRLLDDPEKGXXX 179
I A+ + + ID + + ++ S +E+Y E RDLL T S ++L +D
Sbjct: 116 IVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVL 175
Query: 180 XXXXXXXXXDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAR---EYLGA 236
+ ++ LL + A R G T LN SSRSH + +T++ R
Sbjct: 176 CGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLPRP 235
Query: 237 GNSSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLS--KGRNAH 294
+L + +FVDLAGSER +T + G KE IN SLL LG VI L + R ++
Sbjct: 236 APGQLLVSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRGSN 295
Query: 295 IPYRDSKLTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAK 343
IPYRDSK+TRIL++SLGGNA+T +I +SP+ S +++ NTL +AS A+
Sbjct: 296 IPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 166 bits (421), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 123/384 (32%), Positives = 190/384 (49%), Gaps = 53/384 (13%)
Query: 15 SLTAGQE----------ERILVFVRLRPLNEKEYARNDVSDWECI-----NNNSIVFKNS 59
S+T GQ+ + V VR+RP N +E +R D +CI + +IV
Sbjct: 3 SMTGGQQMGRDPINMPGASVKVAVRVRPFNSREMSR----DSKCIIQMSGSTTTIVNPKQ 58
Query: 60 LLERSVYPPAYTFDRVFGCE--------CPTRQVYEEAAKEVTLSVVNGINSTFFAYGQT 111
E P +++FD + +QVY + +E+ G N FAYGQT
Sbjct: 59 PKET---PKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQT 115
Query: 112 SSGKTYTM--------GGITEYAIQDIYDYID--THQEREFVLKFSAMEIYNESVRDLLS 161
+GK+YTM GI +D++ I+ T+ + ++ S MEIY E VRDLL+
Sbjct: 116 GAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLN 175
Query: 162 -TDSTPLRLLDDPEKGXXXXXXXXXXXXDMSHLMELLAVCEAQRQIGETALNETSSRSHQ 220
+ LR+ + P G + + +L+ R + T +NETSSRSH
Sbjct: 176 PKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHA 235
Query: 221 ILRLTIESSAREYLGAGNSSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTL 280
+ + I + R ++ + ++ VDLAGSERA T G RLKEG++IN+SL TL
Sbjct: 236 VFNI-IFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTL 294
Query: 281 GTVIRKLSKGRNA-----------HIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHV 329
G VI L++ + IPYRDS LT +L+ +LGGN+RTA++ +SPA +
Sbjct: 295 GKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINY 354
Query: 330 EQSRNTLLFASCAKEVATNAQVNV 353
+++ +TL +A AK++ VN+
Sbjct: 355 DETLSTLRYADRAKQIRNTVSVNL 378
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 165 bits (418), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 119/364 (32%), Positives = 183/364 (50%), Gaps = 43/364 (11%)
Query: 24 ILVFVRLRPLNEKEYARNDVSDWECI-----NNNSIVFKNSLLERSVYPPAYTFDRVFGC 78
+ V VR+RP N +E +R D +CI + +IV E P +++FD +
Sbjct: 6 VKVAVRVRPFNSREMSR----DSKCIIQMSGSTTTIVNPKQPKET---PKSFSFDYSYWS 58
Query: 79 E--------CPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM--------GGI 122
+QVY + +E+ G N FAYGQT +GK+YTM GI
Sbjct: 59 HTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGI 118
Query: 123 TEYAIQDIYDYID--THQEREFVLKFSAMEIYNESVRDLLS-TDSTPLRLLDDPEKGXXX 179
+D++ I+ T+ + ++ S MEIY E VRDLL+ + LR+ + P G
Sbjct: 119 IPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYV 178
Query: 180 XXXXXXXXXDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNS 239
+ + +L+ R + T +NETSSRSH + + I + R +
Sbjct: 179 EDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNI-IFTQKRHDAETNIT 237
Query: 240 SILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNA------ 293
+ + ++ VDLAGSERA T G RLKEG++IN+SL TLG VI L++ +
Sbjct: 238 TEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKK 297
Query: 294 -----HIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVATN 348
IPYRDS LT +L+ +LGGN+RTA++ +SPA + +++ +TL +A AK++
Sbjct: 298 KKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNT 357
Query: 349 AQVN 352
VN
Sbjct: 358 VSVN 361
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 119/364 (32%), Positives = 183/364 (50%), Gaps = 43/364 (11%)
Query: 24 ILVFVRLRPLNEKEYARNDVSDWECI-----NNNSIVFKNSLLERSVYPPAYTFDRVFGC 78
+ V VR+RP N +E +R D +CI + +IV E P +++FD +
Sbjct: 6 VKVAVRVRPFNSREMSR----DSKCIIQMSGSTTTIVNPKQPKET---PKSFSFDYSYWS 58
Query: 79 E--------CPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM--------GGI 122
+QVY + +E+ G N FAYGQT +GK+YTM GI
Sbjct: 59 HTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGI 118
Query: 123 TEYAIQDIYDYID--THQEREFVLKFSAMEIYNESVRDLLS-TDSTPLRLLDDPEKGXXX 179
+D++ I+ T+ + ++ S MEIY E VRDLL+ + LR+ + P G
Sbjct: 119 IPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYV 178
Query: 180 XXXXXXXXXDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNS 239
+ + +L+ R + T +NETSSRSH + + I + R +
Sbjct: 179 EDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNI-IFTQKRHDAETNIT 237
Query: 240 SILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNA------ 293
+ + ++ VDLAGSERA T G RLKEG++IN+SL TLG VI L++ +
Sbjct: 238 TEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKK 297
Query: 294 -----HIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVATN 348
IPYRDS LT +L+ +LGGN+RTA++ +SPA + +++ +TL +A AK++
Sbjct: 298 KKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNT 357
Query: 349 AQVN 352
VN
Sbjct: 358 VSVN 361
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 119/364 (32%), Positives = 183/364 (50%), Gaps = 43/364 (11%)
Query: 24 ILVFVRLRPLNEKEYARNDVSDWECI-----NNNSIVFKNSLLERSVYPPAYTFDRVFGC 78
+ V VR+RP N +E +R D +CI + +IV E P +++FD +
Sbjct: 6 VKVAVRVRPFNSREMSR----DSKCIIQMSGSTTTIVNPKQPKET---PKSFSFDYSYWS 58
Query: 79 E--------CPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM--------GGI 122
+QVY + +E+ G N FAYGQT +GK+YTM GI
Sbjct: 59 HTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGI 118
Query: 123 TEYAIQDIYDYID--THQEREFVLKFSAMEIYNESVRDLLS-TDSTPLRLLDDPEKGXXX 179
+D++ I+ T+ + ++ S MEIY E VRDLL+ + LR+ + P G
Sbjct: 119 IPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYV 178
Query: 180 XXXXXXXXXDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNS 239
+ + +L+ R + T +NETSSRSH + + I + R +
Sbjct: 179 EDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNI-IFTQKRHDAETNIT 237
Query: 240 SILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNA------ 293
+ + ++ VDLAGSERA T G RLKEG++IN+SL TLG VI L++ +
Sbjct: 238 TEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKK 297
Query: 294 -----HIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVATN 348
IPYRDS LT +L+ +LGGN+RTA++ +SPA + +++ +TL +A AK++
Sbjct: 298 KKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNT 357
Query: 349 AQVN 352
VN
Sbjct: 358 VSVN 361
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 164 bits (416), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/352 (32%), Positives = 189/352 (53%), Gaps = 36/352 (10%)
Query: 23 RILVFVRLRPLNEKEYARNDVSDWECI---NNNSIVFK--NSLLERS---VYPPAYTFDR 74
++ V VR+RP+N +E D+ +C+ + N ++ N+ L + P + +D
Sbjct: 2 KVKVAVRIRPMNRRE---TDLHT-KCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDH 57
Query: 75 VFGCECPTRQ--------VYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGITEYA 126
F + + V++ + + + +G N+ FAYGQT SGK+YTM G +
Sbjct: 58 CFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQP 117
Query: 127 ------IQDIYDYI--DTHQEREFVLKFSAMEIYNESVRDLLSTDST--PLRLLDDPEKG 176
+++ + ++E+ F ++ S MEIYNE VRDLL + L++ + G
Sbjct: 118 GLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLG 177
Query: 177 XXXXXXXXXXXXDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGA 236
+ L++ R + T +NE SSRSH + ++T+ + + + +
Sbjct: 178 PYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYD-VKS 236
Query: 237 GNSSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLS-----KGR 291
G S ++ VDLAGSERA++T AG RLKEGS+IN+SL TLG VI L+ K +
Sbjct: 237 GTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNK 296
Query: 292 NAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAK 343
N +PYRDS LT +L++SLGGN++TA++ T+SPA + +++ +TL +A AK
Sbjct: 297 NKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 157 bits (397), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 110/341 (32%), Positives = 178/341 (52%), Gaps = 27/341 (7%)
Query: 19 GQEERILVFVRLRPLNEKEYARNDVSDWECIN--NNSIVFKNSLLERSVYPPAYTFDRVF 76
G + I V R+RP+ +++ + ++ + ++SI+ LL + P ++ D+VF
Sbjct: 1 GSKGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSII---HLLHKG-KPVSFELDKVF 56
Query: 77 GCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM------GGITEYAIQDI 130
+ + V++E VT S ++G N FAYGQT +GKTYTM GI + A+Q +
Sbjct: 57 SPQASQQDVFQEVQALVT-SCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLL 115
Query: 131 YDYI-DTHQEREFVLKFSAMEIYNESVRDLLSTD---STPLRLLDDPEKGXXXXXXXXXX 186
+ + + + E+ + SA EIYNE +RDLL + +RL D
Sbjct: 116 FSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVPGLTEFQ 175
Query: 187 XXDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSIL--SA 244
+ + ++ R T LNE SSRSH +L +T+ G S+ L +
Sbjct: 176 VQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVR-------GVDCSTGLRTTG 228
Query: 245 SVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTR 304
+N VDLAGSER ++ G+RL+E HIN+SL LG VI L + R H+P+R+SKLT
Sbjct: 229 KLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAAL-RSRQGHVPFRNSKLTY 287
Query: 305 ILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEV 345
+LQ+SL G+++T ++ +SP + ++ +L FA + V
Sbjct: 288 LLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSV 328
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 157 bits (396), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 107/329 (32%), Positives = 170/329 (51%), Gaps = 46/329 (13%)
Query: 69 AYTFDRVFGCE-------CPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM-- 119
++TFD+ F VY+ +E G ++ FAYGQT SGK+YTM
Sbjct: 97 SFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMG 156
Query: 120 ----GGITEYAIQDIYDYIDTHQER----EFVLKFSAMEIYNESVRDLLST---DSTP-- 166
G+ +D++ I + Q+ + +K S E+YNE VRDLL+ + P
Sbjct: 157 TPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPPYY 216
Query: 167 LRLLDDPEKGXXXXXXXXXXXXDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTI 226
L++ + P +G + ++ + + + R + T +N+TSSRSH + + +
Sbjct: 217 LKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIML 276
Query: 227 ESSAREYLGAGNSSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRK 286
+ + L +++ S+ + VDLAGSERA T G RL+EGS+IN+SL TLG VI
Sbjct: 277 KQIHHD-LETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAA 335
Query: 287 LS----------------KGR-----NAHIPYRDSKLTRILQNSLGGNARTAIICTMSPA 325
L+ +GR N+ +PYRDS LT +L++SLGGN++TA+I +SP
Sbjct: 336 LADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISP- 394
Query: 326 RSHVEQSRNTLLFASCAKEVATNAQVNVV 354
+ +++ +TL +A AK + T A VN V
Sbjct: 395 -TDYDETLSTLRYADQAKRIRTRAVVNQV 422
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 114/347 (32%), Positives = 177/347 (51%), Gaps = 36/347 (10%)
Query: 21 EERILVFVRLRPLNEKEYARNDVSDWECINNNSIVF-----KNSLLERSVYPPAYTFDRV 75
E RI V VR RPLN+KE D+ D I + +V + L R + + FD
Sbjct: 88 EHRICVCVRKRPLNKKETQMKDL-DVITIPSKDVVMVHEPKQKVDLTRYLENQTFRFDYA 146
Query: 76 FGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG------------GIT 123
F P VY A+ + ++ +T FAYGQT SGKT+TMG GI
Sbjct: 147 FDDSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQDCSKGIY 206
Query: 124 EYAIQDIYDYIDTHQEREFVLKFSA--MEIYNESVRDLLSTDSTPLRLLDDPEKGXXXXX 181
A +D++ + ++ L+ A EIY+ V DLL+ T LR+L+D ++
Sbjct: 207 ALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNR-KTKLRVLEDGKQQVQVVG 265
Query: 182 XXXXXXXDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSI 241
+ +++L+ + + R G+T+ N SSRSH + ++ + +
Sbjct: 266 LQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGK---------- 315
Query: 242 LSASVNFVDLAGSERASQTLNAGARLK-EGSHINRSLLTLGTVIRKLSKGRNA-HIPYRD 299
L + +DLAG+ER + T +A + + EG+ IN+SLL L IR L GRN H P+R
Sbjct: 316 LHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRAL--GRNKPHTPFRA 373
Query: 300 SKLTRILQNS-LGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEV 345
SKLT++L++S +G N+RT +I T+SP + E + NTL +A+ KE+
Sbjct: 374 SKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 420
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 150 bits (378), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 112/351 (31%), Positives = 180/351 (51%), Gaps = 34/351 (9%)
Query: 20 QEERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSL-----LERSVYPPAYTFDR 74
+E RI V VR RPLN++E A+ ++ D I + ++ + L + + A+ FD
Sbjct: 49 EEHRICVCVRKRPLNKQELAKKEI-DVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDF 107
Query: 75 VFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGITEYAIQDIYDYI 134
F VY A+ + ++ G +T FAYGQT SGKT+TMGG Q+ I
Sbjct: 108 AFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGI 167
Query: 135 DTHQERE-FVLK-------------FSAMEIYNESVRDLLSTDSTPLRLLDDPEKGXXXX 180
R+ F+LK + EIYN + DLL+ + LR+L+D ++
Sbjct: 168 YAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKA-KLRVLEDGKQQVQVV 226
Query: 181 XXXXXXXXDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSS 240
+++++ + A R G+T N SSRSH ++ + + R
Sbjct: 227 GLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGR--------- 277
Query: 241 ILSASVNFVDLAGSERASQTLNAGARLK-EGSHINRSLLTLGTVIRKLSKGRNAHIPYRD 299
+ + VDLAG+ER + T +A + + EG+ IN+SLL L IR L + + AH P+R+
Sbjct: 278 -MHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-AHTPFRE 335
Query: 300 SKLTRILQNS-LGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVATNA 349
SKLT++L++S +G N+RT +I T+SP S E + NTL +A KE++ ++
Sbjct: 336 SKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPHS 386
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 149 bits (376), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 111/348 (31%), Positives = 178/348 (51%), Gaps = 34/348 (9%)
Query: 20 QEERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSL-----LERSVYPPAYTFDR 74
+E RI V VR RPLN++E A+ ++ D + + ++ + L + + A+ FD
Sbjct: 69 EEHRICVCVRKRPLNKQELAKKEI-DVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDF 127
Query: 75 VFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG------------GI 122
F VY A+ + ++ G +T FAYGQT SGKT+TMG GI
Sbjct: 128 AFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGI 187
Query: 123 TEYAIQDIYDYIDTHQEREFVLK--FSAMEIYNESVRDLLSTDSTPLRLLDDPEKGXXXX 180
A +D++ + + R L+ + EIYN V DLL+ + LR+L+D +
Sbjct: 188 YAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKA-KLRVLEDSRQQVQVV 246
Query: 181 XXXXXXXXDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSS 240
+++++ + A R G+T N SSRSH ++ + + R
Sbjct: 247 GLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGR--------- 297
Query: 241 ILSASVNFVDLAGSERASQTLNAGARLK-EGSHINRSLLTLGTVIRKLSKGRNAHIPYRD 299
L + VDLAG+ER + T +A + + EG+ IN+SLL L IR L + + AH P+R+
Sbjct: 298 -LHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-AHTPFRE 355
Query: 300 SKLTRILQNS-LGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVA 346
SKLT++L++S +G N+RT +I +SP S E + NTL +A KE++
Sbjct: 356 SKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELS 403
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 148 bits (374), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 118/361 (32%), Positives = 186/361 (51%), Gaps = 30/361 (8%)
Query: 4 EEVIPEETQGLSLTAGQEE---RILVFVRLRP-LNEKEYARNDVSDWECINNNSIV--FK 57
E +I EET +L +E I V++R+RP L E + + + ++NS V +
Sbjct: 38 EILIKEETVRRTLHNELQELRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSME 97
Query: 58 NSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTY 117
+ ++ + + FD++F + V++E + V S ++G N FAYGQT SGKT+
Sbjct: 98 VTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQ-SSLDGYNVAIFAYGQTGSGKTF 156
Query: 118 TM----GGITEYAIQDIYDYIDTHQEREFVLKFSA--MEIYNESVRDLLSTD-------S 164
TM GI I I+++I+ + + + K +A +EIYNE++ DLL +D S
Sbjct: 157 TMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTS 216
Query: 165 TPLR--LLDDPEKGXXXXXXXXXXXXDMSHLMEL-LAVCEAQRQIGETALNETSSRSHQI 221
L+ + D E + ++E+ L R TA NE SSRSH I
Sbjct: 217 IGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSI 276
Query: 222 LRLTIESSAREYLGAGNSSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLG 281
+ + S A + ++N VDLAGSER + + G RL+E +IN+SL LG
Sbjct: 277 FIIHLSGS-----NAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALG 331
Query: 282 TVIRKLSK--GRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFA 339
VI L + HIP+R+SKLT +LQ SL G+++T + +SP+ SH+ ++ N+L FA
Sbjct: 332 DVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 391
Query: 340 S 340
S
Sbjct: 392 S 392
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 148 bits (373), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 142/276 (51%), Gaps = 19/276 (6%)
Query: 85 VYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGITE---------YAIQDIYDYID 135
VYE AK+V ++G N T YGQT +GKTYTM G TE A+Q ++ I+
Sbjct: 88 VYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIE 147
Query: 136 THQEREFVLKFSAMEIYNESVRDLLST------DSTPLRLLDDPEKGXXXXXXXXXXXXD 189
++ S +EIYNES+ DLLST TP+ ++++P+ G
Sbjct: 148 ERPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVENPQ-GVFIKGLSVHLTSQ 206
Query: 190 MSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNFV 249
LL E R I +N+ SSRSH I + +E+ +R +++ +N V
Sbjct: 207 EEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTL---SEEKYITSKINLV 263
Query: 250 DLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNS 309
DLAGSER ++ + G LKE ++IN+SL L I L + HIP+R KLT L++S
Sbjct: 264 DLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDS 323
Query: 310 LGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEV 345
LGGN ++ + + +E++ ++L FAS K V
Sbjct: 324 LGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 147 bits (370), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 114/362 (31%), Positives = 169/362 (46%), Gaps = 19/362 (5%)
Query: 19 GQEERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLERSVYPPAYTFDRVFGC 78
G R+ V VRLRP + +D +++ S+ N + Y FD +G
Sbjct: 18 GPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETL--KYQFDAFYGE 75
Query: 79 ECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM------GGITEYAIQDIYD 132
+ +Y + + + ++ G N++ AYG T +GKT+TM G+ A+ D+
Sbjct: 76 RSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQ 135
Query: 133 YI--DTHQEREFVLK--FSAMEIYNESVRDLLSTDSTPLRLLDDPEKGXXXXXXXXXXXX 188
+ + R + L S +EIY E V DLL S L + +D
Sbjct: 136 LTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIREDCRGNILIPGLSQKPIS 195
Query: 189 DMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNF 248
+ R +G T LN+ SSRSH +L + ++ RE L +
Sbjct: 196 SFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQ--RERLAPFRQR--EGKLYL 251
Query: 249 VDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQN 308
+DLAGSE +T N G RLKE IN SL LG V+ L++G +PYRDSKLTR+LQ+
Sbjct: 252 IDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGL-PRVPYRDSKLTRLLQD 310
Query: 309 SLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVATNAQVNVVMSDKAL--VKQLQK 366
SLGG+A + +I ++P R + + L FA+ +KEV N + AL VK QK
Sbjct: 311 SLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQPHALGPVKLSQK 370
Query: 367 EL 368
EL
Sbjct: 371 EL 372
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 145 bits (366), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/291 (35%), Positives = 147/291 (50%), Gaps = 26/291 (8%)
Query: 70 YTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM----GGITEY 125
+ FD++F + ++++E + + S ++G N FAYGQT SGKTYTM GI
Sbjct: 76 FKFDKIFDQQETNDEIFKEVGQLIQ-SSLDGYNVCIFAYGQTGSGKTYTMLNPGDGIVPA 134
Query: 126 AIQDIYDYIDTHQEREFVLKFSA--MEIYNESVRDLL------------STDSTPLRLLD 171
I I+ +ID R + K S +EIYNE++ DLL + DS D
Sbjct: 135 TINHIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHEIRHD 194
Query: 172 DPEKGXXXXXXXXXXXXDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAR 231
K + ++L R TA NE SSRSH I + +E
Sbjct: 195 QELKTTYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLEGKNE 254
Query: 232 EYLGAGNSSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSK-- 289
G G S +N VDLAGSER + ++ G RL+E IN+SL LG VI L+
Sbjct: 255 ---GTGEKS--QGILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNSPD 309
Query: 290 GRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFAS 340
G+ HIP+R+SKLT +LQ SL G+++T + +SPA H+ ++ N+L FAS
Sbjct: 310 GQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFAS 360
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 143 bits (361), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 109/344 (31%), Positives = 175/344 (50%), Gaps = 34/344 (9%)
Query: 24 ILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSL-----LERSVYPPAYTFDRVFGC 78
I V VR RPLN++E A+ ++ D + + ++ + L + + A+ FD F
Sbjct: 1 ICVCVRKRPLNKQELAKKEI-DVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDE 59
Query: 79 ECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG------------GITEYA 126
VY A+ + ++ G +T FAYGQT SGKT+TMG GI A
Sbjct: 60 TASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMA 119
Query: 127 IQDIYDYIDTHQEREFVLK--FSAMEIYNESVRDLLSTDSTPLRLLDDPEKGXXXXXXXX 184
+D++ + + R L+ + EIYN V DLL+ + LR+L+D +
Sbjct: 120 SRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKA-KLRVLEDSRQQVQVVGLQE 178
Query: 185 XXXXDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSA 244
+++++ + A R G+T N SSRSH ++ + + R L
Sbjct: 179 YLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGR----------LHG 228
Query: 245 SVNFVDLAGSERASQTLNAGARLK-EGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLT 303
+ VDLAG+ER + T +A + + EG+ IN+SLL L IR L + + AH P+R+SKLT
Sbjct: 229 KFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-AHTPFRESKLT 287
Query: 304 RILQNS-LGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVA 346
++L++S +G N+RT +I +SP S E + NTL +A KE++
Sbjct: 288 QVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELS 331
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 142 bits (358), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 113/344 (32%), Positives = 177/344 (51%), Gaps = 29/344 (8%)
Query: 20 QEER--ILVFVRLRP-LNEKEYARNDVSDWECINNNSIV--FKNSLLERSVYPPAYTFDR 74
QE R I V+ R+RP L E + + + ++NS V + + ++ + + FD+
Sbjct: 10 QELRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDK 69
Query: 75 VFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM----GGITEYAIQDI 130
+F + V++E + V S ++G N FAYGQT SGKT+TM GI I I
Sbjct: 70 IFDQQDTNVDVFKEVGQLVQ-SSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHI 128
Query: 131 YDYIDTHQEREFVLKFSA--MEIYNESVRDLLSTD-------STPLR--LLDDPEKGXXX 179
+++I+ + + + K + +EIYNE++ DLL +D S L+ + D E
Sbjct: 129 FNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTT 188
Query: 180 XXXXXXXXXDMSHLMEL-LAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGN 238
+ ++E+ L R TA NE SSRSH I + + S A
Sbjct: 189 ITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGS-----NAKT 243
Query: 239 SSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSK--GRNAHIP 296
+ ++N VDLAGSER + + G RL+E +IN+SL LG VI L + HIP
Sbjct: 244 GAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIP 303
Query: 297 YRDSKLTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFAS 340
+R+SKLT +LQ SL G+++T + +SP+ SH+ ++ N+L FAS
Sbjct: 304 FRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFAS 347
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 142 bits (358), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 110/338 (32%), Positives = 174/338 (51%), Gaps = 27/338 (7%)
Query: 24 ILVFVRLRP-LNEKEYARNDVSDWECINNNSIV--FKNSLLERSVYPPAYTFDRVFGCEC 80
I V+ R+RP L E + + + ++NS V + + ++ + + FD++F +
Sbjct: 4 IRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQD 63
Query: 81 PTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM----GGITEYAIQDIYDYIDT 136
V++E + V S ++G N FAYGQT SGKT+TM GI I I+++I+
Sbjct: 64 TNVDVFKEVGQLVQ-SSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINK 122
Query: 137 HQEREFVLKFSA--MEIYNESVRDLLSTD-------STPLR--LLDDPEKGXXXXXXXXX 185
+ + + K + +EIYNE++ DLL +D S L+ + D E
Sbjct: 123 LKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTS 182
Query: 186 XXXDMSHLMEL-LAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSA 244
+ ++E+ L R TA NE SSRSH I + + S A +
Sbjct: 183 CKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGS-----NAKTGAHSYG 237
Query: 245 SVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSK--GRNAHIPYRDSKL 302
++N VDLAGSER + + G RL+E +IN+SL LG VI L + HIP+R+SKL
Sbjct: 238 TLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKL 297
Query: 303 TRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFAS 340
T +LQ SL G+++T + +SP+ SH+ ++ N+L FAS
Sbjct: 298 TYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFAS 335
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 141 bits (356), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 148/296 (50%), Gaps = 34/296 (11%)
Query: 70 YTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM---------- 119
++FDRVF +V+EE A V S ++G FAYGQT SGKT+TM
Sbjct: 85 FSFDRVFPPGSGQDEVFEEIAMLVQ-SALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQL 143
Query: 120 GGITEYAIQDIYDYIDTHQEREFVLKFSA--MEIYNESVRDLLSTDS-------TPLRLL 170
G+ A++ ++ + + F A +EIYNE+VRDLL+T + +R
Sbjct: 144 EGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQGGECEIRRA 203
Query: 171 DDPEKGXXXXXXXXXXXXDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTI--ES 228
+ + LL + R + TA NE SSRSH + +L I E
Sbjct: 204 GPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQISGEH 263
Query: 229 SAREYLGAGNSSILSASVNFVDLAGSERASQTLNAGA----RLKEGSHINRSLLTLGTVI 284
S+R A ++ VDLAGSER L G RL+E IN SL TLG VI
Sbjct: 264 SSRGLQ-------CGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVI 316
Query: 285 RKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFAS 340
LS + +H+PYR+SKLT +LQNSLGG+A+ + +SP +V +S N+L FAS
Sbjct: 317 MALSN-KESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFAS 371
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 108/331 (32%), Positives = 166/331 (50%), Gaps = 28/331 (8%)
Query: 24 ILVFVRLRPLNEKEYARNDVSDWECINNNSIVFK--NSLLERSVYPPAYTFDRVFGCECP 81
I VF R+RP E E R W + +++ + ++ + + ++FD+VF
Sbjct: 69 IRVFCRIRPPLESEENRM-CCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSS 127
Query: 82 TRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGITEYA------IQDIYDYID 135
++E + + S ++G N FAYGQT SGKTYTM G+ E + ++D I
Sbjct: 128 QSDIFEMVSPLIQ-SALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIR 186
Query: 136 THQER--EFVLKFSAMEIYNESVRDLLSTDS--TPLRLLDDPEKGXXXXXXXXXXXXDMS 191
++ E+ +K + +EIYNE + DLLS + +R+ + + D +
Sbjct: 187 GYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPN 246
Query: 192 HLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLG--AGNSSILSASVNFV 249
HL L+ + R TA NE SSRSH + +L E +G A I S+N V
Sbjct: 247 HLRHLMHTAKMNRATASTAGNERSSRSHAVTKL-------ELIGRHAEKQEISVGSINLV 299
Query: 250 DLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNS 309
DLAGSE R+ E +INRSL L VI L + ++ HIPYR+SKLT +L S
Sbjct: 300 DLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQKQD-HIPYRNSKLTHLLMPS 354
Query: 310 LGGNARTAIICTMSPARSHVEQSRNTLLFAS 340
LGGN++T + +SP + ++S +L FA+
Sbjct: 355 LGGNSKTLMFINVSPFQDCFQESVKSLRFAA 385
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 140 bits (354), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 108/333 (32%), Positives = 167/333 (50%), Gaps = 28/333 (8%)
Query: 22 ERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFK--NSLLERSVYPPAYTFDRVFGCE 79
+ I VF R+RP E E R W + +++ + ++ + + ++FD+VF
Sbjct: 59 DNIRVFCRIRPPLESEENRM-CCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPL 117
Query: 80 CPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGITEYA------IQDIYDY 133
++E + + S ++G N FAYGQT SGKTYTM G+ E + ++D
Sbjct: 118 SSQSDIFEMVSPLIQ-SALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDS 176
Query: 134 IDTHQER--EFVLKFSAMEIYNESVRDLLSTDS--TPLRLLDDPEKGXXXXXXXXXXXXD 189
I ++ E+ +K + +EIYNE + DLLS + +R+ + + D
Sbjct: 177 IRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLD 236
Query: 190 MSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLG--AGNSSILSASVN 247
+HL L+ + R TA NE SSRSH + +L E +G A I S+N
Sbjct: 237 PNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL-------ELIGRHAEKQEISVGSIN 289
Query: 248 FVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQ 307
VDLAGSE R+ E +INRSL L VI L + ++ HIPYR+SKLT +L
Sbjct: 290 LVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQKQD-HIPYRNSKLTHLLM 344
Query: 308 NSLGGNARTAIICTMSPARSHVEQSRNTLLFAS 340
SLGGN++T + +SP + ++S +L FA+
Sbjct: 345 PSLGGNSKTLMFINVSPFQDCFQESVKSLRFAA 377
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 140 bits (354), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 108/331 (32%), Positives = 166/331 (50%), Gaps = 28/331 (8%)
Query: 24 ILVFVRLRPLNEKEYARNDVSDWECINNNSIVFK--NSLLERSVYPPAYTFDRVFGCECP 81
I VF R+RP E E R W + +++ + ++ + + ++FD+VF
Sbjct: 55 IRVFCRIRPPLESEENRM-CCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSS 113
Query: 82 TRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGITEYA------IQDIYDYID 135
++E + + S ++G N FAYGQT SGKTYTM G+ E + ++D I
Sbjct: 114 QSDIFEMVSPLIQ-SALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIR 172
Query: 136 THQER--EFVLKFSAMEIYNESVRDLLSTDS--TPLRLLDDPEKGXXXXXXXXXXXXDMS 191
++ E+ +K + +EIYNE + DLLS + +R+ + + D +
Sbjct: 173 GYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPN 232
Query: 192 HLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLG--AGNSSILSASVNFV 249
HL L+ + R TA NE SSRSH + +L E +G A I S+N V
Sbjct: 233 HLRHLMHTAKMNRATASTAGNERSSRSHAVTKL-------ELIGRHAEKQEISVGSINLV 285
Query: 250 DLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNS 309
DLAGSE R+ E +INRSL L VI L + ++ HIPYR+SKLT +L S
Sbjct: 286 DLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQKQD-HIPYRNSKLTHLLMPS 340
Query: 310 LGGNARTAIICTMSPARSHVEQSRNTLLFAS 340
LGGN++T + +SP + ++S +L FA+
Sbjct: 341 LGGNSKTLMFINVSPFQDCFQESVKSLRFAA 371
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 140 bits (353), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 109/338 (32%), Positives = 173/338 (51%), Gaps = 27/338 (7%)
Query: 24 ILVFVRLRP-LNEKEYARNDVSDWECINNNSIV--FKNSLLERSVYPPAYTFDRVFGCEC 80
I V+ R+RP L E + + + ++NS V + + ++ + + FD++F +
Sbjct: 5 IRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQD 64
Query: 81 PTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM----GGITEYAIQDIYDYIDT 136
V++E + V S ++G N FAYGQT SGKT+TM GI I I+++I+
Sbjct: 65 TNVDVFKEVGQLVQ-SSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINK 123
Query: 137 HQEREFVLKFSA--MEIYNESVRDLLSTD-------STPLR--LLDDPEKGXXXXXXXXX 185
+ + + K + +EIYNE++ DLL +D S L+ + D E
Sbjct: 124 LKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTS 183
Query: 186 XXXDMSHLMEL-LAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSA 244
+ ++E+ L R TA NE SSRSH I + + S A +
Sbjct: 184 CKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGS-----NAKTGAHSYG 238
Query: 245 SVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSK--GRNAHIPYRDSKL 302
++N VDLAGS R + + G RL+E +IN+SL LG VI L + HIP+R+SKL
Sbjct: 239 TLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKL 298
Query: 303 TRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFAS 340
T +LQ SL G+++T + +SP+ SH+ ++ N+L FAS
Sbjct: 299 TYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFAS 336
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 140 bits (352), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 149/285 (52%), Gaps = 24/285 (8%)
Query: 70 YTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM----GGITEY 125
+ FD++F E V+EE ++ + S+ +G N FAYGQT SGKT+TM G+
Sbjct: 432 FLFDKIFEREQSNDLVFEELSQLIQCSL-DGTNVCVFAYGQTGSGKTFTMSHPTNGMIPL 490
Query: 126 AIQDIYDYIDTHQER--EFVLKFSAMEIYNESVRDLLSTDSTPLRLL----DDPEKGXXX 179
+++ I++ I+ +E+ + ++ +EIYNE++ DLL+ P DD
Sbjct: 491 SLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEIKHDDIAGKTTV 550
Query: 180 XXXXXXXXXDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNS 239
+ +L +R T N+ SSRSH I + ++ G +
Sbjct: 551 TNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQ---------GYN 601
Query: 240 SILSAS----VNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHI 295
S+ S +N +DLAGSER + + G RLKE IN+SL LG VI L+ +H+
Sbjct: 602 SLTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHV 661
Query: 296 PYRDSKLTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFAS 340
PYR+SKLT +L++SLGGN++T + +SP + ++ N+L FA+
Sbjct: 662 PYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFAT 706
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 140 bits (352), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 109/338 (32%), Positives = 173/338 (51%), Gaps = 27/338 (7%)
Query: 24 ILVFVRLRP-LNEKEYARNDVSDWECINNNSIV--FKNSLLERSVYPPAYTFDRVFGCEC 80
I V+ R+RP L E + + + ++NS V + + ++ + + FD++F +
Sbjct: 5 IRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQD 64
Query: 81 PTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM----GGITEYAIQDIYDYIDT 136
V++E + V S ++G N FAYGQT SGKT+TM GI I I+++I+
Sbjct: 65 TNVDVFKEVGQLVQ-SSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINK 123
Query: 137 HQEREFVLKFSA--MEIYNESVRDLLSTD-------STPLR--LLDDPEKGXXXXXXXXX 185
+ + + K + +EIYNE++ DLL +D S L+ + D E
Sbjct: 124 LKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTS 183
Query: 186 XXXDMSHLMEL-LAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSA 244
+ ++E+ L R TA NE SSRSH I + + S A +
Sbjct: 184 CKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGS-----NAKTGAHSYG 238
Query: 245 SVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSK--GRNAHIPYRDSKL 302
++N VDLAGSER + + G RL+E +I +SL LG VI L + HIP+R+SKL
Sbjct: 239 TLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPDSTKRHIPFRNSKL 298
Query: 303 TRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFAS 340
T +LQ SL G+++T + +SP+ SH+ ++ N+L FAS
Sbjct: 299 TYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFAS 336
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 140 bits (352), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 109/338 (32%), Positives = 173/338 (51%), Gaps = 27/338 (7%)
Query: 24 ILVFVRLRP-LNEKEYARNDVSDWECINNNSIV--FKNSLLERSVYPPAYTFDRVFGCEC 80
I V+ R+RP L E + + + ++NS V + + ++ + + FD++F +
Sbjct: 5 IRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQD 64
Query: 81 PTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM----GGITEYAIQDIYDYIDT 136
V++E + V S ++G N FAYGQT SGKT+TM GI I I+++I+
Sbjct: 65 TNVDVFKEVGQLVQ-SSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINK 123
Query: 137 HQEREFVLKFSA--MEIYNESVRDLLSTD-------STPLR--LLDDPEKGXXXXXXXXX 185
+ + + K + +EIYNE++ DLL +D S L+ + D E
Sbjct: 124 LKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTS 183
Query: 186 XXXDMSHLMEL-LAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSA 244
+ ++E+ L R TA NE SS SH I + + S A +
Sbjct: 184 CKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGS-----NAKTGAHSYG 238
Query: 245 SVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSK--GRNAHIPYRDSKL 302
++N VDLAGSER + + G RL+E +IN+SL LG VI L + HIP+R+SKL
Sbjct: 239 TLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKL 298
Query: 303 TRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFAS 340
T +LQ SL G+++T + +SP+ SH+ ++ N+L FAS
Sbjct: 299 TYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFAS 336
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 139 bits (351), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 107/331 (32%), Positives = 166/331 (50%), Gaps = 28/331 (8%)
Query: 24 ILVFVRLRPLNEKEYARNDVSDWECINNNSIVFK--NSLLERSVYPPAYTFDRVFGCECP 81
I VF R+RP E E R W + +++ + ++ + + ++FD+VF
Sbjct: 58 IRVFCRIRPPLESEENRM-CCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSS 116
Query: 82 TRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGITEYA------IQDIYDYID 135
++E + + S ++G N FAYGQ+ SGKTYTM G+ E + ++D I
Sbjct: 117 QSDIFEMVSPLIQ-SALDGYNICIFAYGQSGSGKTYTMDGVPESVGVIPRTVDLLFDSIR 175
Query: 136 THQER--EFVLKFSAMEIYNESVRDLLSTDS--TPLRLLDDPEKGXXXXXXXXXXXXDMS 191
++ E+ +K + +EIYNE + DLLS + +R+ + + D +
Sbjct: 176 GYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPN 235
Query: 192 HLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLG--AGNSSILSASVNFV 249
HL L+ + R TA NE SSRSH + +L E +G A I S+N V
Sbjct: 236 HLRHLMHTAKMNRATASTAGNERSSRSHAVTKL-------ELIGRHAEKQEISVGSINLV 288
Query: 250 DLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNS 309
DLAGSE R+ E +INRSL L VI L + ++ HIPYR+SKLT +L S
Sbjct: 289 DLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQKQD-HIPYRNSKLTHLLMPS 343
Query: 310 LGGNARTAIICTMSPARSHVEQSRNTLLFAS 340
LGGN++T + +SP + ++S +L FA+
Sbjct: 344 LGGNSKTLMFINVSPFQDCFQESVKSLRFAA 374
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 107/331 (32%), Positives = 165/331 (49%), Gaps = 28/331 (8%)
Query: 24 ILVFVRLRPLNEKEYARNDVSDWECINNNSIVFK--NSLLERSVYPPAYTFDRVFGCECP 81
I VF R+RP E E R W + +++ + ++ + + ++FD+VF
Sbjct: 58 IRVFCRIRPPLESEENRM-CCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSS 116
Query: 82 TRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGITEYA------IQDIYDYID 135
++E + + S ++G N FAYGQT SGKTYTM G+ E + ++D I
Sbjct: 117 QSDIFEMVSPLIQ-SALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIR 175
Query: 136 THQER--EFVLKFSAMEIYNESVRDLLSTDS--TPLRLLDDPEKGXXXXXXXXXXXXDMS 191
++ E+ +K + +EIYNE + DLLS + +R+ + + D +
Sbjct: 176 GYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPN 235
Query: 192 HLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLG--AGNSSILSASVNFV 249
HL L+ + R TA NE SSRSH + +L E +G A I S+N V
Sbjct: 236 HLRHLMHTAKMNRATASTAGNERSSRSHAVTKL-------ELIGRHAEKQEISVGSINLV 288
Query: 250 DLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNS 309
DLAGSE R+ E +I RSL L VI L + ++ HIPYR+SKLT +L S
Sbjct: 289 DLAGSESPK----TSTRMTETKNIKRSLSELTNVILALLQKQD-HIPYRNSKLTHLLMPS 343
Query: 310 LGGNARTAIICTMSPARSHVEQSRNTLLFAS 340
LGGN++T + +SP + ++S +L FA+
Sbjct: 344 LGGNSKTLMFINVSPFQDCFQESVKSLRFAA 374
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 136 bits (342), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 106/339 (31%), Positives = 172/339 (50%), Gaps = 30/339 (8%)
Query: 24 ILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSL-----LERSVYPPAYTFDRVFGC 78
I V VR RPL+E E + D SD + NN ++ + + + + + D+VF
Sbjct: 2 IKVVVRKRPLSELEKKKKD-SDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDD 60
Query: 79 ECPTRQVYEEAAKEVTLSVV-NGINSTFFAYGQTSSGKTYTM-----------GGITEYA 126
VYE K + + + NG + FAYGQT SGKTYTM GI +YA
Sbjct: 61 TVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYA 120
Query: 127 IQDIYDYIDTH-QEREFVLKFSAMEIYNESVRDLLSTDSTPLRLLDDPEKGXXXXXXXXX 185
DI+ +++ + ++ + S EIY + DLL + L++ +K
Sbjct: 121 AGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKM-VAALENGKKEVVVKDLKIL 179
Query: 186 XXXDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSAS 245
L+ + R+IG + N+ SSRSH IL + ++ + N+S+
Sbjct: 180 RVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDINK------NTSL--GK 231
Query: 246 VNFVDLAGSERASQTLNAGARLK-EGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTR 304
+ F+DLAGSER + T++ + + +G++INRSLL L IR + +N HIP+RDS+LT+
Sbjct: 232 IAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKN-HIPFRDSELTK 290
Query: 305 ILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAK 343
+L++ G +++ +I +SP S EQ+ NTL ++S K
Sbjct: 291 VLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVK 329
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 132 bits (333), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 145/291 (49%), Gaps = 26/291 (8%)
Query: 70 YTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM----GGITEY 125
+ FD +F ++++EE +++ S ++G N FAYGQT SGKTYTM G+
Sbjct: 55 FQFDMIFEPSHTNKEIFEEI-RQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGDGMIPM 113
Query: 126 AIQDIYDYIDTHQER--EFVLKFSAMEIYNESVRDLLS-----------TDSTPLRLLDD 172
+ I+ + +ER + ++ +EIYNE++ DLL DS + D
Sbjct: 114 TLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHD 173
Query: 173 PEK-GXXXXXXXXXXXXDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAR 231
EK G S + +L R T NE SSRSH + + I
Sbjct: 174 HEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRN- 232
Query: 232 EYLGAGNSSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSK-- 289
L G +S +N VDLAGSER + + G RL+E +IN+SL LG VI L+
Sbjct: 233 --LHTGETS--QGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPD 288
Query: 290 GRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFAS 340
+IP+R+SKLT +LQ SL G+++T + + P +H+ ++ N+L FAS
Sbjct: 289 AGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFAS 339
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 136/293 (46%), Gaps = 35/293 (11%)
Query: 70 YTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG--------- 120
+ FD F ++Y+ + ++ G T AYGQT +GK+Y+MG
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILP 122
Query: 121 ---GITEYAIQDIYDYIDTHQERE---FVLKFSAMEIYNESVRDLL-STDSTPLRLLDDP 173
GI A+ DI++ + QE + S +EIYNE DLL ST P+
Sbjct: 123 EHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMV----A 178
Query: 174 EKGXXXXXXXXXXXXDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREY 233
+ D+ H++EL R++ T +N SSRSH I+ + ++S
Sbjct: 179 ARCQRCTCLPLHSQADLHHILEL---GTRNRRVRPTNMNSNSSRSHAIVTIHVKSKTHH- 234
Query: 234 LGAGNSSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNA 293
+ +N VDLAGSE +T + G +EG +IN LL++ V+ ++ G
Sbjct: 235 ----------SRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTV 284
Query: 294 HIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVA 346
IPYRDS LT +LQ SL + + +SP + + ++ +TL F + AK A
Sbjct: 285 -IPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKAAA 336
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 137/292 (46%), Gaps = 35/292 (11%)
Query: 70 YTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG--------- 120
+ FD F ++Y+ + ++ G T AYGQT +GK+Y+MG
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILP 122
Query: 121 ---GITEYAIQDIYDYIDTHQERE---FVLKFSAMEIYNESVRDLL-STDSTPLRLLDDP 173
GI A+ DI++ + QE + S +EIYNE DLL ST P+
Sbjct: 123 EHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMV----A 178
Query: 174 EKGXXXXXXXXXXXXDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREY 233
+ D+ H++EL R++ T +N SSRSH I+ + ++S
Sbjct: 179 ARCQRCTCLPLHSQADLHHILEL---GTRNRRVRPTNMNSNSSRSHAIVTIHVKSKTHH- 234
Query: 234 LGAGNSSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNA 293
+ +N VDLAGSE +T + G +EG +IN LL++ V+ ++ G
Sbjct: 235 ----------SRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTV 284
Query: 294 HIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEV 345
IPYRDS LT +LQ SL + + +SP + + ++ +TL F + AK++
Sbjct: 285 -IPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKKL 335
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 116 bits (291), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 110/244 (45%), Gaps = 23/244 (9%)
Query: 24 ILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLERSVYPPAYTFDRVFGCECPTR 83
I V R RPLNE E R D + ++V Y FDRV
Sbjct: 8 IKVMCRFRPLNEAEILRGDKFIPKFKGEETVVIGQG--------KPYVFDRVLPPNTTQE 59
Query: 84 QVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM---------GGITEYAIQDIYDYI 134
QVY AK++ V+ G N T FAYGQTSSGKT+TM GI DI+D+I
Sbjct: 60 QVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIFDHI 119
Query: 135 DTHQER-EFVLKFSAMEIYNESVRDLLSTDSTPLRLLDDPEKGXXXXXXXXXXXXDMSHL 193
+ E EF +K S EIY + +RDLL T L + +D + +
Sbjct: 120 YSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGCTERFVSSPEEV 179
Query: 194 MELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNFVDLAG 253
M+++ +A R + T +NE SSRSH I + I+ E LS + VDLAG
Sbjct: 180 MDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVE-----TEKKLSGKLYLVDLAG 234
Query: 254 SERA 257
SE+
Sbjct: 235 SEKV 238
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 54/80 (67%)
Query: 274 NRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHVEQSR 333
N+SL LG VI L++G H+PYRDSK+TRILQ+SLGGN RT I+ SP+ + +++
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 334 NTLLFASCAKEVATNAQVNV 353
+TL+F AK + VN+
Sbjct: 61 STLMFGQRAKTIKNTVSVNL 80
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 80.1 bits (196), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 55/82 (67%)
Query: 272 HINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHVEQ 331
+IN+SL LG VI L++G H+PYRDSK+TRILQ+SL GN RT I+ SP+ + +
Sbjct: 3 NINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAE 62
Query: 332 SRNTLLFASCAKEVATNAQVNV 353
+++TL+F AK + VN+
Sbjct: 63 TKSTLMFGQRAKTIKNTVSVNL 84
>pdb|2XD2|A Chain A, The Crystal Structure Of Malx From Streptococcus
Pneumoniae
pdb|2XD2|B Chain B, The Crystal Structure Of Malx From Streptococcus
Pneumoniae
pdb|2XD3|A Chain A, The Crystal Structure Of Malx From Streptococcus
Pneumoniae In Complex With Maltopentaose
Length = 416
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 30/51 (58%)
Query: 375 MKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSI 425
+KNL+++ K DF + E+++V+ + +I T+ R A+ + D L ++
Sbjct: 308 VKNLEASQKFVDFLVATEQQKVLYDKTNEIPANTEARSYAEGKNDELTTAV 358
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.128 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,327,348
Number of Sequences: 62578
Number of extensions: 1156836
Number of successful extensions: 2712
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2403
Number of HSP's gapped (non-prelim): 98
length of query: 1106
length of database: 14,973,337
effective HSP length: 109
effective length of query: 997
effective length of database: 8,152,335
effective search space: 8127877995
effective search space used: 8127877995
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)