Query 001290
Match_columns 1106
No_of_seqs 354 out of 2183
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 20:31:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001290.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001290hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y65_A Kinesin, kinesin heavy 100.0 9.1E-85 3.1E-89 736.4 28.1 341 18-372 7-360 (365)
2 3b6u_A Kinesin-like protein KI 100.0 4.9E-84 1.7E-88 731.5 30.1 345 18-365 17-372 (372)
3 1goj_A Kinesin, kinesin heavy 100.0 1.4E-83 4.9E-88 724.6 27.1 330 20-359 4-344 (355)
4 1t5c_A CENP-E protein, centrom 100.0 1.3E-82 4.6E-87 715.2 30.1 330 20-358 2-341 (349)
5 3bfn_A Kinesin-like protein KI 100.0 2.1E-83 7.2E-88 729.1 23.7 335 19-360 18-362 (388)
6 2vvg_A Kinesin-2; motor protei 100.0 2.7E-82 9.2E-87 712.8 28.3 332 21-357 3-347 (350)
7 3cob_A Kinesin heavy chain-lik 100.0 5.2E-82 1.8E-86 714.6 28.6 339 21-373 4-352 (369)
8 1x88_A Kinesin-like protein KI 100.0 3.3E-82 1.1E-86 714.6 26.1 331 19-353 5-358 (359)
9 1bg2_A Kinesin; motor protein, 100.0 1E-81 3.4E-86 702.3 28.9 312 19-345 4-325 (325)
10 2wbe_C Bipolar kinesin KRP-130 100.0 2.5E-81 8.4E-86 710.4 28.8 333 18-356 19-372 (373)
11 2zfi_A Kinesin-like protein KI 100.0 2.1E-81 7.1E-86 709.6 27.8 330 21-353 3-362 (366)
12 2owm_A Nckin3-434, related to 100.0 8.9E-81 3E-85 719.0 30.9 334 18-354 34-422 (443)
13 3lre_A Kinesin-like protein KI 100.0 5.8E-81 2E-85 703.5 28.0 324 19-345 7-355 (355)
14 4a14_A Kinesin, kinesin-like p 100.0 1E-80 3.5E-85 699.1 29.4 319 18-343 7-344 (344)
15 3gbj_A KIF13B protein; kinesin 100.0 2.4E-79 8.2E-84 690.1 28.1 320 23-344 2-349 (354)
16 3nwn_A Kinesin-like protein KI 100.0 2.6E-79 9E-84 690.6 24.8 317 19-345 21-359 (359)
17 2heh_A KIF2C protein; kinesin, 100.0 7E-79 2.4E-83 691.8 27.1 318 19-348 48-385 (387)
18 2h58_A Kinesin-like protein KI 100.0 1.3E-78 4.5E-83 678.5 27.9 314 21-346 3-329 (330)
19 1v8k_A Kinesin-like protein KI 100.0 1.5E-78 5.2E-83 693.1 26.9 320 19-350 68-407 (410)
20 3t0q_A AGR253WP; kinesin, alph 100.0 1.4E-78 4.8E-83 682.9 26.1 321 21-349 4-348 (349)
21 1ry6_A Internal kinesin; kines 100.0 1.3E-78 4.4E-83 685.2 25.6 321 23-353 1-339 (360)
22 2rep_A Kinesin-like protein KI 100.0 3.8E-78 1.3E-82 684.6 29.2 319 20-345 20-376 (376)
23 2nr8_A Kinesin-like protein KI 100.0 2.6E-78 8.8E-83 682.3 25.1 320 16-345 17-358 (358)
24 1f9v_A Kinesin-like protein KA 100.0 1.6E-78 5.3E-83 681.9 22.9 319 22-350 3-346 (347)
25 3u06_A Protein claret segregat 100.0 1.5E-76 5.1E-81 678.4 30.5 321 21-353 58-391 (412)
26 3dc4_A Kinesin-like protein NO 100.0 1.3E-76 4.5E-81 665.3 26.8 307 16-350 16-340 (344)
27 4etp_A Kinesin-like protein KA 100.0 1.2E-76 4.1E-81 678.2 25.3 321 21-350 58-402 (403)
28 4h1g_A Maltose binding protein 100.0 6.6E-73 2.3E-77 687.7 23.9 320 20-346 372-712 (715)
29 2kin_B Kinesin; motor protein, 100.0 2.3E-29 7.8E-34 236.9 7.6 99 270-368 1-99 (100)
30 3kin_B Kinesin heavy chain; mo 99.9 2.6E-27 9E-32 229.0 11.3 98 274-371 1-98 (117)
31 2o0a_A S.cerevisiae chromosome 99.9 8.2E-23 2.8E-27 221.6 6.1 262 22-350 24-294 (298)
32 3ec2_A DNA replication protein 91.2 0.052 1.8E-06 54.0 0.9 52 68-120 5-56 (180)
33 2w58_A DNAI, primosome compone 89.5 0.11 3.8E-06 52.4 1.6 51 69-120 21-72 (202)
34 2qgz_A Helicase loader, putati 88.4 0.11 3.9E-06 57.1 0.9 53 70-123 121-173 (308)
35 2bjv_A PSP operon transcriptio 83.3 0.33 1.1E-05 51.2 1.2 45 69-119 2-46 (265)
36 2r62_A Cell division protease 83.1 0.63 2.1E-05 48.9 3.3 52 68-120 6-62 (268)
37 3t15_A Ribulose bisphosphate c 80.0 0.65 2.2E-05 50.4 2.1 48 72-119 2-53 (293)
38 1jbk_A CLPB protein; beta barr 79.6 0.74 2.5E-05 44.4 2.2 31 91-121 32-62 (195)
39 1g8p_A Magnesium-chelatase 38 78.7 0.74 2.5E-05 50.0 2.0 44 68-119 19-62 (350)
40 1l8q_A Chromosomal replication 78.6 1.1 3.6E-05 48.8 3.2 52 67-121 5-56 (324)
41 3h4m_A Proteasome-activating n 76.2 0.77 2.6E-05 48.6 1.2 52 68-119 12-68 (285)
42 2p65_A Hypothetical protein PF 76.0 0.87 3E-05 44.0 1.5 30 91-120 32-61 (187)
43 4b4t_M 26S protease regulatory 75.9 1.4 4.7E-05 51.3 3.3 71 68-138 176-274 (434)
44 3uk6_A RUVB-like 2; hexameric 75.7 1.2 4.1E-05 48.8 2.7 47 68-119 39-87 (368)
45 3cf0_A Transitional endoplasmi 75.0 0.97 3.3E-05 49.0 1.7 51 69-119 11-66 (301)
46 1ixz_A ATP-dependent metallopr 74.9 0.64 2.2E-05 48.6 0.2 52 68-120 11-67 (254)
47 4b4t_K 26S protease regulatory 74.7 2.9 0.0001 48.5 5.6 70 69-138 168-265 (428)
48 3te6_A Regulatory protein SIR3 74.3 0.83 2.8E-05 51.0 0.9 33 87-119 30-62 (318)
49 3bos_A Putative DNA replicatio 70.5 1.7 5.8E-05 43.9 2.1 48 69-121 24-71 (242)
50 1d2n_A N-ethylmaleimide-sensit 68.8 1.8 6.2E-05 45.8 2.0 21 99-119 61-81 (272)
51 3b9p_A CG5977-PA, isoform A; A 68.8 1.2 4E-05 47.6 0.5 51 69-119 17-71 (297)
52 4b4t_L 26S protease subunit RP 68.0 2 6.7E-05 50.1 2.2 71 68-138 176-274 (437)
53 3eie_A Vacuolar protein sortin 67.6 2.3 8E-05 46.4 2.6 51 69-119 14-68 (322)
54 2chg_A Replication factor C sm 67.4 2.2 7.5E-05 42.0 2.1 22 99-120 35-56 (226)
55 2z4s_A Chromosomal replication 67.4 2.7 9.2E-05 48.4 3.1 52 66-121 98-149 (440)
56 2v1u_A Cell division control p 67.2 1.5 5.1E-05 47.8 0.9 47 69-120 15-62 (387)
57 4b4t_J 26S protease regulatory 66.8 3.2 0.00011 47.9 3.6 70 69-138 144-241 (405)
58 2qz4_A Paraplegin; AAA+, SPG7, 66.7 0.94 3.2E-05 47.0 -0.7 20 101-120 38-57 (262)
59 3d8b_A Fidgetin-like protein 1 66.7 1.1 3.9E-05 49.9 -0.2 51 69-119 80-134 (357)
60 1iy2_A ATP-dependent metallopr 66.5 1.1 3.9E-05 47.6 -0.2 52 68-120 35-91 (278)
61 2qby_B CDC6 homolog 3, cell di 66.4 2.5 8.4E-05 46.4 2.5 46 69-119 16-62 (384)
62 2kjq_A DNAA-related protein; s 66.0 1.6 5.6E-05 42.8 0.9 19 103-121 37-55 (149)
63 2c9o_A RUVB-like 1; hexameric 65.8 3 0.0001 48.1 3.1 47 69-120 33-81 (456)
64 1xwi_A SKD1 protein; VPS4B, AA 64.2 1.7 6E-05 47.7 0.7 51 69-119 8-62 (322)
65 4b4t_H 26S protease regulatory 64.1 2.1 7.1E-05 50.3 1.4 70 69-138 205-302 (467)
66 1qde_A EIF4A, translation init 64.0 2.3 8E-05 43.1 1.6 23 94-118 45-67 (224)
67 4b4t_I 26S protease regulatory 63.9 13 0.00044 43.4 7.9 70 69-138 178-275 (437)
68 1lv7_A FTSH; alpha/beta domain 63.8 1.4 4.8E-05 46.1 -0.1 52 68-120 7-63 (257)
69 4etp_B Spindle POLE BODY-assoc 63.4 12 0.00042 41.8 7.2 240 21-327 58-310 (333)
70 1vec_A ATP-dependent RNA helic 63.3 3.1 0.00011 41.5 2.3 24 94-119 34-57 (206)
71 2gxq_A Heat resistant RNA depe 62.6 2.6 9E-05 42.0 1.7 23 94-118 32-54 (207)
72 2qp9_X Vacuolar protein sortin 62.3 3.8 0.00013 45.7 3.0 51 69-119 47-101 (355)
73 3i00_A HIP-I, huntingtin-inter 62.0 40 0.0014 32.8 9.7 65 358-426 14-78 (120)
74 1fnn_A CDC6P, cell division co 61.8 4.2 0.00014 44.4 3.2 46 69-119 13-61 (389)
75 1sxj_C Activator 1 40 kDa subu 61.5 3.5 0.00012 45.2 2.5 42 71-120 23-64 (340)
76 3syl_A Protein CBBX; photosynt 61.2 2 7E-05 45.8 0.6 20 100-119 65-84 (309)
77 3dkp_A Probable ATP-dependent 58.9 3.3 0.00011 42.8 1.7 24 93-118 59-82 (245)
78 3vfd_A Spastin; ATPase, microt 58.2 2.3 8E-05 47.7 0.4 52 68-119 110-165 (389)
79 2x8a_A Nuclear valosin-contain 57.5 1.2 4E-05 48.1 -2.1 51 69-119 6-61 (274)
80 3nmd_A CGMP dependent protein 57.3 21 0.0007 31.9 6.1 26 394-419 39-64 (72)
81 3bor_A Human initiation factor 57.1 2.3 7.8E-05 44.1 0.1 24 93-118 60-83 (237)
82 2jee_A YIIU; FTSZ, septum, coi 56.5 41 0.0014 30.7 8.1 57 361-425 22-78 (81)
83 3s4r_A Vimentin; alpha-helix, 56.2 50 0.0017 30.5 8.9 64 361-427 25-88 (93)
84 2pl3_A Probable ATP-dependent 55.9 4 0.00014 41.9 1.7 23 94-118 56-78 (236)
85 1p9r_A General secretion pathw 55.5 3.6 0.00012 47.4 1.4 29 92-120 157-185 (418)
86 3pfi_A Holliday junction ATP-d 55.4 5.4 0.00018 43.2 2.7 44 71-119 27-72 (338)
87 3ly5_A ATP-dependent RNA helic 54.3 3.6 0.00012 43.5 1.1 24 93-118 84-107 (262)
88 1t6n_A Probable ATP-dependent 54.0 4.5 0.00015 40.9 1.7 24 94-119 45-68 (220)
89 3fmo_B ATP-dependent RNA helic 52.4 4.9 0.00017 43.7 1.7 26 93-118 122-147 (300)
90 3b6e_A Interferon-induced heli 52.4 2.4 8.1E-05 42.3 -0.7 22 96-119 44-65 (216)
91 2qby_A CDC6 homolog 1, cell di 52.0 4.2 0.00014 44.1 1.2 46 69-119 16-62 (386)
92 1wrb_A DJVLGB; RNA helicase, D 51.9 4.9 0.00017 41.7 1.6 24 94-119 54-77 (253)
93 3jvv_A Twitching mobility prot 51.8 4.1 0.00014 46.0 1.0 25 96-120 117-141 (356)
94 3iuy_A Probable ATP-dependent 51.8 4.8 0.00016 41.1 1.5 23 94-118 51-73 (228)
95 3eiq_A Eukaryotic initiation f 51.8 5.7 0.0002 43.6 2.2 25 93-119 70-94 (414)
96 1in4_A RUVB, holliday junction 51.6 6.6 0.00022 43.2 2.6 45 71-119 23-68 (334)
97 2zan_A Vacuolar protein sortin 51.1 3.5 0.00012 47.5 0.3 52 68-119 129-184 (444)
98 3n70_A Transport activator; si 50.6 5.5 0.00019 38.3 1.6 21 99-119 21-41 (145)
99 3hu3_A Transitional endoplasmi 49.8 4.6 0.00016 47.4 1.1 51 69-119 200-255 (489)
100 1ofh_A ATP-dependent HSL prote 49.4 6.1 0.00021 41.7 1.9 19 102-120 50-68 (310)
101 3fe2_A Probable ATP-dependent 49.2 5.3 0.00018 41.4 1.3 23 94-118 60-82 (242)
102 2oxc_A Probable ATP-dependent 49.0 5.9 0.0002 40.7 1.6 22 95-118 56-77 (230)
103 3co5_A Putative two-component 48.8 8.4 0.00029 36.9 2.6 21 101-121 26-46 (143)
104 3llm_A ATP-dependent RNA helic 48.8 4.8 0.00017 41.7 0.9 25 93-119 69-93 (235)
105 3h1t_A Type I site-specific re 48.5 5.2 0.00018 47.2 1.2 28 92-120 189-216 (590)
106 1njg_A DNA polymerase III subu 48.4 6.8 0.00023 38.8 1.9 17 103-119 46-62 (250)
107 3ber_A Probable ATP-dependent 48.1 6.2 0.00021 41.4 1.7 24 94-119 74-97 (249)
108 3pxg_A Negative regulator of g 47.9 7.7 0.00026 44.9 2.5 44 71-122 178-221 (468)
109 3pvs_A Replication-associated 47.6 3.8 0.00013 47.5 -0.1 44 71-119 24-67 (447)
110 3cf2_A TER ATPase, transitiona 46.8 17 0.00059 45.4 5.5 69 69-137 200-296 (806)
111 3fht_A ATP-dependent RNA helic 46.5 6.9 0.00024 42.9 1.8 27 93-119 55-81 (412)
112 2oap_1 GSPE-2, type II secreti 46.4 7.1 0.00024 46.2 1.9 23 96-120 256-278 (511)
113 1iqp_A RFCS; clamp loader, ext 45.9 7.4 0.00025 41.4 1.8 42 71-120 23-64 (327)
114 3fmp_B ATP-dependent RNA helic 45.5 6.6 0.00023 44.8 1.5 26 93-118 122-147 (479)
115 1u0j_A DNA replication protein 45.3 8.6 0.00029 42.0 2.3 29 91-119 90-121 (267)
116 3pey_A ATP-dependent RNA helic 44.8 7.6 0.00026 42.1 1.8 26 94-119 36-61 (395)
117 1q0u_A Bstdead; DEAD protein, 44.7 4.6 0.00016 41.0 -0.0 22 95-118 36-57 (219)
118 3mq9_A Bone marrow stromal ant 44.6 44 0.0015 38.3 8.1 63 363-425 401-466 (471)
119 1sxj_D Activator 1 41 kDa subu 44.3 6.5 0.00022 42.5 1.1 43 70-120 34-76 (353)
120 1hqc_A RUVB; extended AAA-ATPa 44.1 14 0.0005 39.3 3.8 45 70-119 9-55 (324)
121 3u61_B DNA polymerase accessor 44.0 5.1 0.00017 43.2 0.2 42 71-120 24-66 (324)
122 2eyu_A Twitching motility prot 43.3 6.4 0.00022 42.3 0.8 19 102-120 25-43 (261)
123 2j0s_A ATP-dependent RNA helic 42.8 8.1 0.00028 42.6 1.6 25 93-119 67-91 (410)
124 2chq_A Replication factor C sm 42.6 7.3 0.00025 41.2 1.1 42 71-120 15-56 (319)
125 1ojl_A Transcriptional regulat 42.4 7.4 0.00025 42.4 1.2 20 100-119 23-42 (304)
126 4b3f_X DNA-binding protein smu 42.2 5.9 0.0002 47.7 0.4 27 94-121 198-224 (646)
127 4fcw_A Chaperone protein CLPB; 41.7 6.5 0.00022 41.8 0.6 17 103-119 48-64 (311)
128 3sjb_C Golgi to ER traffic pro 41.4 1.1E+02 0.0037 28.6 8.5 62 358-422 22-83 (93)
129 3hnw_A Uncharacterized protein 41.4 93 0.0032 30.7 8.7 32 393-424 101-132 (138)
130 1gvn_B Zeta; postsegregational 41.1 17 0.00058 39.3 3.8 31 89-119 15-50 (287)
131 1qvr_A CLPB protein; coiled co 40.8 7.7 0.00026 48.4 1.1 63 358-420 400-462 (854)
132 1s2m_A Putative ATP-dependent 40.8 8.6 0.00029 42.2 1.4 24 94-119 52-75 (400)
133 2fz4_A DNA repair protein RAD2 40.3 8.8 0.0003 40.2 1.3 23 96-120 104-126 (237)
134 2ce7_A Cell division protein F 39.7 6.9 0.00024 45.9 0.5 51 68-119 11-66 (476)
135 2z0m_A 337AA long hypothetical 39.6 9.9 0.00034 40.3 1.6 23 95-119 26-48 (337)
136 1w5s_A Origin recognition comp 39.5 12 0.00041 41.2 2.3 26 95-120 40-70 (412)
137 2dhr_A FTSH; AAA+ protein, hex 39.3 6.8 0.00023 46.2 0.3 50 69-119 27-81 (499)
138 2r44_A Uncharacterized protein 39.1 7 0.00024 42.3 0.4 18 103-120 47-64 (331)
139 1tue_A Replication protein E1; 39.0 7.6 0.00026 41.2 0.6 27 95-121 49-77 (212)
140 3a7p_A Autophagy protein 16; c 38.6 1E+02 0.0036 31.1 8.6 57 358-422 67-123 (152)
141 3hnw_A Uncharacterized protein 37.4 84 0.0029 31.1 7.7 26 393-418 108-133 (138)
142 1e9r_A Conjugal transfer prote 37.1 5.6 0.00019 45.1 -0.8 25 102-126 53-77 (437)
143 2i4i_A ATP-dependent RNA helic 37.0 12 0.00039 41.3 1.7 24 94-119 46-69 (417)
144 4ayb_H DNA-directed RNA polyme 36.7 17 0.00058 33.3 2.4 45 1011-1074 20-64 (84)
145 3nmd_A CGMP dependent protein 35.9 82 0.0028 28.1 6.5 25 390-414 42-66 (72)
146 1sxj_B Activator 1 37 kDa subu 35.8 13 0.00043 39.5 1.6 22 99-120 39-60 (323)
147 3fho_A ATP-dependent RNA helic 35.7 13 0.00045 43.2 1.9 25 95-119 151-175 (508)
148 3oiy_A Reverse gyrase helicase 35.4 13 0.00043 41.4 1.7 24 93-118 29-52 (414)
149 1w36_D RECD, exodeoxyribonucle 35.1 8.9 0.00031 46.0 0.4 23 102-124 164-186 (608)
150 1n0w_A DNA repair protein RAD5 35.0 12 0.0004 38.1 1.2 29 92-120 11-42 (243)
151 2ewv_A Twitching motility prot 34.7 7.7 0.00026 43.8 -0.2 20 101-120 135-154 (372)
152 1nlw_A MAD protein, MAX dimeri 34.6 1.2E+02 0.0042 27.1 7.7 39 387-425 39-77 (80)
153 2p5t_B PEZT; postsegregational 34.0 22 0.00075 37.3 3.1 33 87-119 12-49 (253)
154 1xti_A Probable ATP-dependent 34.0 14 0.00047 40.2 1.7 25 93-119 38-62 (391)
155 2dfs_A Myosin-5A; myosin-V, in 33.5 1.1E+02 0.0039 39.4 10.1 22 98-119 152-173 (1080)
156 3mq7_A Bone marrow stromal ant 33.2 1.2E+02 0.004 29.5 7.5 32 396-427 72-103 (121)
157 3i5x_A ATP-dependent RNA helic 33.2 14 0.00049 42.9 1.7 26 93-118 102-127 (563)
158 3hws_A ATP-dependent CLP prote 33.1 13 0.00043 41.1 1.2 18 102-119 51-68 (363)
159 3c8u_A Fructokinase; YP_612366 33.1 19 0.00065 36.5 2.4 30 90-119 8-39 (208)
160 1jr3_A DNA polymerase III subu 33.1 22 0.00074 38.6 3.0 41 71-119 14-55 (373)
161 1sxj_E Activator 1 40 kDa subu 32.7 12 0.00042 40.5 1.0 16 105-120 39-54 (354)
162 2v1x_A ATP-dependent DNA helic 32.3 20 0.00067 43.0 2.7 25 93-119 52-76 (591)
163 4a2p_A RIG-I, retinoic acid in 32.2 15 0.00052 42.0 1.7 24 94-119 16-39 (556)
164 1l8d_A DNA double-strand break 32.0 2.7E+02 0.0091 25.7 10.0 66 361-426 26-102 (112)
165 1rif_A DAR protein, DNA helica 32.0 8.6 0.00029 40.8 -0.4 22 97-120 125-146 (282)
166 4emc_A Monopolin complex subun 31.9 1.6E+02 0.0053 30.8 8.8 50 357-421 18-67 (190)
167 2d7d_A Uvrabc system protein B 31.9 39 0.0013 41.0 5.2 79 69-152 4-96 (661)
168 2w0m_A SSO2452; RECA, SSPF, un 31.4 14 0.00049 36.9 1.1 28 93-120 11-41 (235)
169 1sxj_A Activator 1 95 kDa subu 31.3 15 0.0005 43.0 1.4 18 102-119 77-94 (516)
170 2gk6_A Regulator of nonsense t 31.1 12 0.0004 45.1 0.5 20 103-122 196-215 (624)
171 2v66_B Nuclear distribution pr 30.7 2.6E+02 0.009 26.8 9.6 62 362-427 6-67 (111)
172 1hv8_A Putative ATP-dependent 30.7 14 0.00049 39.5 1.0 24 95-119 38-61 (367)
173 3oja_B Anopheles plasmodium-re 30.6 64 0.0022 37.9 6.7 16 319-334 391-406 (597)
174 2cvh_A DNA repair and recombin 30.5 15 0.00052 36.6 1.2 29 92-120 7-38 (220)
175 1fuu_A Yeast initiation factor 30.2 10 0.00035 41.2 -0.2 24 93-118 51-74 (394)
176 3tbk_A RIG-I helicase domain; 30.2 17 0.00059 41.4 1.7 24 94-119 13-36 (555)
177 2db3_A ATP-dependent RNA helic 30.0 19 0.00066 40.7 2.0 23 94-118 87-109 (434)
178 1um8_A ATP-dependent CLP prote 29.7 16 0.00054 40.5 1.2 18 102-119 72-89 (376)
179 3ghg_A Fibrinogen alpha chain; 29.6 44 0.0015 39.7 4.8 40 389-428 111-150 (562)
180 3upu_A ATP-dependent DNA helic 28.6 21 0.00073 40.9 2.1 37 79-120 27-63 (459)
181 1rz3_A Hypothetical protein rb 28.5 22 0.00075 35.9 1.9 18 102-119 22-39 (201)
182 2fwr_A DNA repair protein RAD2 27.8 18 0.00063 40.9 1.4 23 95-119 103-125 (472)
183 1nkp_A C-MYC, MYC proto-oncoge 27.7 2.2E+02 0.0076 25.9 8.3 42 385-426 42-83 (88)
184 1wp9_A ATP-dependent RNA helic 27.6 18 0.00062 39.7 1.2 25 93-120 17-41 (494)
185 4gl2_A Interferon-induced heli 27.3 19 0.00066 42.9 1.5 25 93-119 15-39 (699)
186 1r6b_X CLPA protein; AAA+, N-t 27.3 19 0.00067 43.8 1.5 46 71-124 184-229 (758)
187 3b85_A Phosphate starvation-in 27.2 21 0.00071 37.0 1.5 25 93-119 15-39 (208)
188 3pxi_A Negative regulator of g 27.2 22 0.00075 43.5 2.0 45 70-122 177-221 (758)
189 4gp7_A Metallophosphoesterase; 26.9 13 0.00043 36.8 -0.2 17 104-120 11-27 (171)
190 1ypw_A Transitional endoplasmi 26.8 25 0.00085 43.8 2.4 52 68-119 199-255 (806)
191 4a74_A DNA repair and recombin 26.6 19 0.00065 36.2 1.1 28 92-119 12-42 (231)
192 3sqw_A ATP-dependent RNA helic 26.3 22 0.00075 41.9 1.7 26 93-118 51-76 (579)
193 3lw7_A Adenylate kinase relate 26.3 15 0.00052 34.8 0.2 16 104-119 3-18 (179)
194 4ag6_A VIRB4 ATPase, type IV s 26.1 14 0.00047 41.3 -0.1 20 102-121 35-54 (392)
195 3b9q_A Chloroplast SRP recepto 26.1 29 0.00098 38.0 2.4 16 104-119 102-117 (302)
196 3nbx_X ATPase RAVA; AAA+ ATPas 25.8 22 0.00076 41.9 1.6 26 93-120 34-59 (500)
197 2b8t_A Thymidine kinase; deoxy 25.8 11 0.00039 39.7 -0.8 24 102-125 12-35 (223)
198 1x79_B RAB GTPase binding effe 25.6 3.6E+02 0.012 25.9 9.5 63 359-425 6-68 (112)
199 2gza_A Type IV secretion syste 25.6 21 0.00072 39.9 1.3 22 96-119 171-192 (361)
200 3sja_C Golgi to ER traffic pro 25.5 2.6E+02 0.0088 24.6 7.7 22 359-380 6-27 (65)
201 2jlq_A Serine protease subunit 25.1 22 0.00075 40.7 1.3 24 94-118 12-35 (451)
202 2dr3_A UPF0273 protein PH0284; 25.1 19 0.00066 36.5 0.8 27 94-120 12-41 (247)
203 2orw_A Thymidine kinase; TMTK, 25.0 11 0.00039 38.0 -1.0 21 104-124 5-25 (184)
204 2xzl_A ATP-dependent helicase 24.8 18 0.00062 45.1 0.6 21 103-123 376-396 (802)
205 2wjy_A Regulator of nonsense t 24.5 18 0.00062 45.1 0.5 20 103-122 372-391 (800)
206 3lfu_A DNA helicase II; SF1 he 24.3 20 0.00067 42.5 0.7 22 99-120 19-40 (647)
207 3tr0_A Guanylate kinase, GMP k 24.1 15 0.00052 36.4 -0.2 16 104-119 9-24 (205)
208 2ykg_A Probable ATP-dependent 24.0 28 0.00096 41.5 2.0 23 95-119 23-45 (696)
209 2qag_C Septin-7; cell cycle, c 23.8 16 0.00054 42.2 -0.2 23 97-119 26-48 (418)
210 3e70_C DPA, signal recognition 23.5 34 0.0012 38.0 2.5 17 103-119 130-146 (328)
211 1lkx_A Myosin IE heavy chain; 23.1 33 0.0011 42.3 2.4 36 84-119 76-111 (697)
212 1i84_S Smooth muscle myosin he 23.0 38 0.0013 44.0 3.0 34 85-118 152-185 (1184)
213 3tau_A Guanylate kinase, GMP k 22.9 19 0.00066 36.5 0.3 17 103-119 9-25 (208)
214 3a00_A Guanylate kinase, GMP k 22.8 17 0.0006 36.0 -0.1 15 105-119 4-18 (186)
215 2pt7_A CAG-ALFA; ATPase, prote 22.8 30 0.001 38.3 1.8 22 96-119 167-188 (330)
216 1kgd_A CASK, peripheral plasma 22.3 17 0.00058 36.0 -0.3 16 104-119 7-22 (180)
217 1c4o_A DNA nucleotide excision 22.3 38 0.0013 41.1 2.7 79 70-162 2-94 (664)
218 2qnr_A Septin-2, protein NEDD5 22.1 16 0.00056 39.7 -0.5 24 96-119 12-35 (301)
219 3e1s_A Exodeoxyribonuclease V, 22.0 23 0.00078 42.4 0.7 21 102-122 204-224 (574)
220 1zp6_A Hypothetical protein AT 21.7 18 0.0006 35.6 -0.3 16 104-119 11-26 (191)
221 2r8r_A Sensor protein; KDPD, P 21.7 15 0.00051 39.3 -0.9 20 103-122 7-26 (228)
222 3cf2_A TER ATPase, transitiona 21.6 32 0.0011 43.1 1.8 50 103-161 512-584 (806)
223 1w9i_A Myosin II heavy chain; 21.6 36 0.0012 42.3 2.4 22 98-119 168-189 (770)
224 1ly1_A Polynucleotide kinase; 21.5 21 0.00072 34.4 0.2 15 104-118 4-18 (181)
225 3pxi_A Negative regulator of g 21.5 40 0.0014 41.2 2.8 16 104-119 523-538 (758)
226 2v26_A Myosin VI; calmodulin-b 21.4 37 0.0013 42.4 2.3 35 84-119 122-157 (784)
227 1ik9_A DNA repair protein XRCC 21.2 1.4E+02 0.0049 31.4 6.5 20 323-342 114-133 (213)
228 1lvg_A Guanylate kinase, GMP k 21.1 19 0.00064 36.4 -0.2 16 104-119 6-21 (198)
229 2og2_A Putative signal recogni 21.0 42 0.0014 37.9 2.6 16 104-119 159-174 (359)
230 1xx6_A Thymidine kinase; NESG, 21.0 14 0.00048 37.9 -1.2 23 104-126 10-32 (191)
231 3vlc_E Golgi to ER traffic pro 20.7 84 0.0029 29.4 4.0 57 359-418 30-86 (94)
232 3lnc_A Guanylate kinase, GMP k 20.7 26 0.0009 35.9 0.8 16 104-119 29-44 (231)
233 1r6b_X CLPA protein; AAA+, N-t 20.7 39 0.0013 41.2 2.4 17 103-119 489-505 (758)
234 1g8x_A Myosin II heavy chain f 20.4 38 0.0013 43.4 2.2 35 84-119 154-189 (1010)
235 1gm5_A RECG; helicase, replica 20.4 43 0.0015 41.6 2.7 24 96-119 383-406 (780)
236 2px0_A Flagellar biosynthesis 20.4 32 0.0011 37.5 1.4 18 103-120 106-123 (296)
237 2qen_A Walker-type ATPase; unk 20.3 35 0.0012 36.3 1.6 17 103-119 32-48 (350)
238 1qhx_A CPT, protein (chloramph 20.3 23 0.00079 34.3 0.2 17 103-119 4-20 (178)
239 3trf_A Shikimate kinase, SK; a 20.3 23 0.00079 34.6 0.2 16 104-119 7-22 (185)
240 1rj9_A FTSY, signal recognitio 20.3 24 0.00081 38.8 0.3 17 103-119 103-119 (304)
241 1j8m_F SRP54, signal recogniti 20.3 66 0.0023 35.1 3.9 17 104-120 100-116 (297)
242 3he5_A Synzip1; heterodimeric 20.2 1.1E+02 0.0036 24.6 3.8 20 360-379 4-23 (49)
243 2v6i_A RNA helicase; membrane, 20.1 35 0.0012 38.8 1.7 16 104-119 4-19 (431)
244 2ycu_A Non muscle myosin 2C, a 20.0 40 0.0014 43.1 2.4 35 84-119 128-163 (995)
No 1
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=9.1e-85 Score=736.42 Aligned_cols=341 Identities=39% Similarity=0.552 Sum_probs=290.8
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCCcceEEec---CceEEecCCCccCCCCCCceecceecCCCCChHHHHHHHHHHHH
Q 001290 18 AGQEERILVFVRLRPLNEKEYARNDVSDWECIN---NNSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVT 94 (1106)
Q Consensus 18 ~~~eerIrV~VRVRPl~~~E~~~~~~~~~~~i~---~~tIv~~~~~~~~s~~~~~F~FD~VF~~~atQeeVYe~vv~plV 94 (1106)
.+..++|+|+||+||++..|...+....+.+.+ ..++.+. .+.|.||+||+++++|++||+.++.|+|
T Consensus 7 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~~---------~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv 77 (365)
T 2y65_A 7 IPAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIA---------GKVYLFDKVFKPNASQEKVYNEAAKSIV 77 (365)
T ss_dssp -CCEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEET---------TEEEECSEEECTTCCHHHHHHHHTHHHH
T ss_pred CCCCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEEC---------CEEEeCceEecCCCCHHHHHHHhhhhHH
Confidence 345789999999999999998877666665554 3444432 3589999999999999999999999999
Q ss_pred HHhhcCCCcceeeeccCCCCCccccC---------CChHhHHHHHHHhhhcc-ccceEEEEeeEEEEecccccccCCCCC
Q 001290 95 LSVVNGINSTFFAYGQTSSGKTYTMG---------GITEYAIQDIYDYIDTH-QEREFVLKFSAMEIYNESVRDLLSTDS 164 (1106)
Q Consensus 95 ~svL~G~NatIfAYGQTGSGKTyTM~---------GIi~rai~dLF~~I~~~-~~~~f~V~vS~lEIYNE~V~DLLs~~s 164 (1106)
+++++|||+||||||||||||||||. ||+||++++||+.+... ....|.|++||+|||||+|+|||++..
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 157 (365)
T 2y65_A 78 TDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSK 157 (365)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTTC
T ss_pred HHHhCCCceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCCc
Confidence 99999999999999999999999995 79999999999999764 457899999999999999999999988
Q ss_pred CCceeeeCCCCCeEecCceEEEecCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEE
Q 001290 165 TPLRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSA 244 (1106)
Q Consensus 165 ~~L~i~ed~~~g~~V~gLtev~V~S~eE~l~LL~~G~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~S 244 (1106)
.++.+++++.++++|.|++++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|.+.... ......|
T Consensus 158 ~~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-----~~~~~~s 232 (365)
T 2y65_A 158 VNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLE-----NQKKLSG 232 (365)
T ss_dssp CSBCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETT-----TCCEEEE
T ss_pred CCceEEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecC-----CCCEeEE
Confidence 89999999999999999999999999999999999999999999999999999999999999876432 2345789
Q ss_pred eEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCCccCCCCChhhHhhhhccCCCceeeEEEecCC
Q 001290 245 SVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSP 324 (1106)
Q Consensus 245 kL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISP 324 (1106)
+|+|||||||||++++++.|.+++|+.+||+||++||+||.+|+.++..||||||||||+||||+||||++|+|||||||
T Consensus 233 kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP 312 (365)
T 2y65_A 233 KLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSP 312 (365)
T ss_dssp EEEEEECCCCCC----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECC
T ss_pred EEEEEECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEecC
Confidence 99999999999999999999999999999999999999999999876789999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHhhcccccccccccCHHHHHHHHHHHHHHHH
Q 001290 325 ARSHVEQSRNTLLFASCAKEVATNAQVNVVMSDKALVKQLQKELARLE 372 (1106)
Q Consensus 325 s~~~~eETLsTLrFAsrAK~Ikn~p~vN~~~sd~alik~Lq~Ei~rLe 372 (1106)
+..+++||++||+||+|||.|+|+|.+|...+.++++++|++|+++|+
T Consensus 313 ~~~~~~ETl~TL~fA~rak~I~n~~~~n~~~~~~~~~~~~~~e~~~~~ 360 (365)
T 2y65_A 313 ASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKNA 360 (365)
T ss_dssp BGGGHHHHHHHHHHHHHHTTCEEECCCEEECCSHHHHHC---------
T ss_pred ccCCHHHHHHHHHHHHHHhcccCcceeCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888888888777654
No 2
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=4.9e-84 Score=731.54 Aligned_cols=345 Identities=39% Similarity=0.606 Sum_probs=289.8
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCCcceEEec-CceEEecCCCccCCCCCCceecceecCCCCChHHHHHHHHHHHHHH
Q 001290 18 AGQEERILVFVRLRPLNEKEYARNDVSDWECIN-NNSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLS 96 (1106)
Q Consensus 18 ~~~eerIrV~VRVRPl~~~E~~~~~~~~~~~i~-~~tIv~~~~~~~~s~~~~~F~FD~VF~~~atQeeVYe~vv~plV~s 96 (1106)
.+..++|+|+||+||++..|...+...++.+.. ..+|.+.++.......++.|+||+||+++++|++||+.+++|+|++
T Consensus 17 ~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~ 96 (372)
T 3b6u_A 17 QGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLVDS 96 (372)
T ss_dssp ----CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHHHHH
T ss_pred CCCCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHHHHH
Confidence 345789999999999999998877777666654 4567666543222334678999999999999999999999999999
Q ss_pred hhcCCCcceeeeccCCCCCccccC---------CChHhHHHHHHHhhhccccceEEEEeeEEEEecccccccCCCCC-CC
Q 001290 97 VVNGINSTFFAYGQTSSGKTYTMG---------GITEYAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLLSTDS-TP 166 (1106)
Q Consensus 97 vL~G~NatIfAYGQTGSGKTyTM~---------GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLLs~~s-~~ 166 (1106)
+++|||+||||||||||||||||+ ||+||++++||..+.......|.|++||+|||||+|+|||++.. ..
T Consensus 97 ~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~ 176 (372)
T 3b6u_A 97 VLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKR 176 (372)
T ss_dssp HHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTCSSCEEEEEEEEEEEETTEEEETTSSCTTCC
T ss_pred HhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhhccCCceEEEEEEEEEeCCEEEECCCCCCCCC
Confidence 999999999999999999999995 78999999999999988888999999999999999999998764 57
Q ss_pred ceeeeCCCCCeEecCceEEEecCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeE
Q 001290 167 LRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASV 246 (1106)
Q Consensus 167 L~i~ed~~~g~~V~gLtev~V~S~eE~l~LL~~G~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL 246 (1106)
+.+++++.+|++|.||+++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|++..... .+......|+|
T Consensus 177 l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~--~~~~~~~~skL 254 (372)
T 3b6u_A 177 LELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGL--DGENHIRVGKL 254 (372)
T ss_dssp BCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-------CCCEEEEEE
T ss_pred ceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCC--CCCcceEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999998865421 22345678999
Q ss_pred EEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCCccCCCCChhhHhhhhccCCCceeeEEEecCCCC
Q 001290 247 NFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPAR 326 (1106)
Q Consensus 247 ~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~ 326 (1106)
+|||||||||..++++.|.|++|+.+||+||++||+||.+|+.++..||||||||||+||||+||||++|+|||||||+.
T Consensus 255 ~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~ 334 (372)
T 3b6u_A 255 NLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPAS 334 (372)
T ss_dssp EEEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEEEEEEECCBG
T ss_pred EEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEEEEEEeCCcc
Confidence 99999999999999999999999999999999999999999988778999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhcccccccccccCHHHHHHHHH
Q 001290 327 SHVEQSRNTLLFASCAKEVATNAQVNVVMSDKALVKQLQ 365 (1106)
Q Consensus 327 ~~~eETLsTLrFAsrAK~Ikn~p~vN~~~sd~alik~Lq 365 (1106)
.+++||++||+||+|||+|+|+|.+|+...+ +++++||
T Consensus 335 ~~~~ETlsTLrfA~rak~I~n~~~~n~~~~~-~~~~~~~ 372 (372)
T 3b6u_A 335 YNVEETLTTLRYANRAKNIKNKPRVNEDPKD-ALLREFQ 372 (372)
T ss_dssp GGHHHHHHHHHHHHHHTTCBCCCCCCC------------
T ss_pred cCHHHHHHHHHHHHHHhhccccceecCChHH-HHHHhcC
Confidence 9999999999999999999999999987543 5665543
No 3
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=1.4e-83 Score=724.56 Aligned_cols=330 Identities=35% Similarity=0.549 Sum_probs=306.0
Q ss_pred CCCCEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCCccCCCCCCceecceecCCCCChHHHHHHHHHHHHHHhhc
Q 001290 20 QEERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVN 99 (1106)
Q Consensus 20 ~eerIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~~~~s~~~~~F~FD~VF~~~atQeeVYe~vv~plV~svL~ 99 (1106)
..++|+|+||+||++..|...+....+.+.++.++.+... .....|.||+||+++++|++||+.++.|+|+++++
T Consensus 4 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~-----~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~ 78 (355)
T 1goj_A 4 SANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSK-----EAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILN 78 (355)
T ss_dssp SSCBCEEEEEECCCCHHHHTTTCCBCEEECSTTEEEECST-----TCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTT
T ss_pred CCCCeEEEEECCCCChHHhhcCCceEEEEcCCCeEEEccC-----CCccEEeeCeEECCCCccHHHHHHHHHHHHHHHhC
Confidence 3579999999999999999888788888888777765432 12468999999999999999999999999999999
Q ss_pred CCCcceeeeccCCCCCccccC----------CChHhHHHHHHHhhhccc-cceEEEEeeEEEEecccccccCCCCCCCce
Q 001290 100 GINSTFFAYGQTSSGKTYTMG----------GITEYAIQDIYDYIDTHQ-EREFVLKFSAMEIYNESVRDLLSTDSTPLR 168 (1106)
Q Consensus 100 G~NatIfAYGQTGSGKTyTM~----------GIi~rai~dLF~~I~~~~-~~~f~V~vS~lEIYNE~V~DLLs~~s~~L~ 168 (1106)
|||+||||||||||||||||+ ||+||++++||+.+.... ...|.|++||+|||||+|||||++....+.
T Consensus 79 G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~ 158 (355)
T 1goj_A 79 GYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLP 158 (355)
T ss_dssp TCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTCCSCC
T ss_pred CCcceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCccCCce
Confidence 999999999999999999995 699999999999987643 568999999999999999999999888999
Q ss_pred eeeCCCCCeEecCceEEEecCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEEE
Q 001290 169 LLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNF 248 (1106)
Q Consensus 169 i~ed~~~g~~V~gLtev~V~S~eE~l~LL~~G~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~f 248 (1106)
+++++.+|++|.|++++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+.... ......|+|+|
T Consensus 159 i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-----~~~~~~skL~l 233 (355)
T 1goj_A 159 VHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVE-----TGSAKSGQLFL 233 (355)
T ss_dssp EEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETT-----TTEEEEEEEEE
T ss_pred eEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccC-----CCceeeeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999886432 33467899999
Q ss_pred EecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCCccCCCCChhhHhhhhccCCCceeeEEEecCCCCcc
Q 001290 249 VDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSH 328 (1106)
Q Consensus 249 VDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~ 328 (1106)
||||||||.+++++.|.+++|+.+||+||++||+||.+|+.++..||||||||||+||||+||||++|+|||||||+..+
T Consensus 234 VDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~ 313 (355)
T 1goj_A 234 VDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYN 313 (355)
T ss_dssp EECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGG
T ss_pred EECCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECccccc
Confidence 99999999999999999999999999999999999999998777899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcccccccccccCHHH
Q 001290 329 VEQSRNTLLFASCAKEVATNAQVNVVMSDKA 359 (1106)
Q Consensus 329 ~eETLsTLrFAsrAK~Ikn~p~vN~~~sd~a 359 (1106)
++||++||+||+|||.|+|+|.+|...++..
T Consensus 314 ~~ETl~TL~fA~rak~I~n~~~vn~~~~~~~ 344 (355)
T 1goj_A 314 DAETLSTLRFGMRAKSIKNKAKVNAELSPAE 344 (355)
T ss_dssp HHHHHHHHHHHHHHHTCBCCCCCCSSSSCSS
T ss_pred HHHHHHHHHHHHHHhhccCCceeCCCCCHHH
Confidence 9999999999999999999999998876543
No 4
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.3e-82 Score=715.24 Aligned_cols=330 Identities=46% Similarity=0.667 Sum_probs=286.2
Q ss_pred CCCCEEEEEEeCCCChhhhhcCCCcceEEe-cCceEEecCCCccCCCCCCceecceecCCCCChHHHHHHHHHHHHHHhh
Q 001290 20 QEERILVFVRLRPLNEKEYARNDVSDWECI-NNNSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSVV 98 (1106)
Q Consensus 20 ~eerIrV~VRVRPl~~~E~~~~~~~~~~~i-~~~tIv~~~~~~~~s~~~~~F~FD~VF~~~atQeeVYe~vv~plV~svL 98 (1106)
.+++|+|+||+||++..|...++...+.+. ++++|...+ ..+.|.||+||+++++|++||+.++.|+|++++
T Consensus 2 e~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~-------~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l 74 (349)
T 1t5c_A 2 EEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVD-------GSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAI 74 (349)
T ss_dssp -CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEETT-------SSCEEECSCEECTTSCHHHHHHHTTHHHHHHHH
T ss_pred CCCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEECC-------CCeEEECCEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 368999999999999999876665444333 334443221 146899999999999999999999999999999
Q ss_pred cCCCcceeeeccCCCCCccccC------CChHhHHHHHHHhhhccccceEEEEeeEEEEecccccccCCCCC--CCceee
Q 001290 99 NGINSTFFAYGQTSSGKTYTMG------GITEYAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLLSTDS--TPLRLL 170 (1106)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~------GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLLs~~s--~~L~i~ 170 (1106)
+|||+||||||||||||||||+ ||+||++++||+.+....+..|.|++||+|||||+|+|||++.. .++.++
T Consensus 75 ~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~ 154 (349)
T 1t5c_A 75 QGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIR 154 (349)
T ss_dssp TTCCEEEEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGCTTEEEEEEEEEEEEETTEEEESSSSSCTTCCEEEE
T ss_pred cCCccceeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhCcCCcEEEEEEEEEEeCCEEEEccCCCCCCCCceEE
Confidence 9999999999999999999996 79999999999999988889999999999999999999998754 579999
Q ss_pred eCCCCCeEecCceEEEecCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEEEEe
Q 001290 171 DDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNFVD 250 (1106)
Q Consensus 171 ed~~~g~~V~gLtev~V~S~eE~l~LL~~G~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~fVD 250 (1106)
+++.++++|.||+++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|++...............|+|+|||
T Consensus 155 ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~lVD 234 (349)
T 1t5c_A 155 EDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVD 234 (349)
T ss_dssp ETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEEEEEEE
T ss_pred ECCCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999886543222223346789999999
Q ss_pred cCCCccccccccccccccccccchhhHHHHHHHHHHhcCCC-CCccCCCCChhhHhhhhccCCCceeeEEEecCCCCcch
Q 001290 251 LAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGR-NAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHV 329 (1106)
Q Consensus 251 LAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk-~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~~ 329 (1106)
||||||+.++++.|.|++|+.+||+||++||+||.+|+.++ ..||||||||||+||||+||||++|+|||||||+ ++
T Consensus 235 LAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~--~~ 312 (349)
T 1t5c_A 235 LAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SF 312 (349)
T ss_dssp CCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT--CS
T ss_pred CCCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC--CH
Confidence 99999999999999999999999999999999999998764 4699999999999999999999999999999997 58
Q ss_pred HHHHHHHHHHHHHhhcccccccccccCHH
Q 001290 330 EQSRNTLLFASCAKEVATNAQVNVVMSDK 358 (1106)
Q Consensus 330 eETLsTLrFAsrAK~Ikn~p~vN~~~sd~ 358 (1106)
+||++||+||+|||.|+|+|.+|+.....
T Consensus 313 ~ETlsTL~fA~rak~I~n~~~vn~~~~~~ 341 (349)
T 1t5c_A 313 DETLTALQFASTAKYMKNTPYVNEVSTDE 341 (349)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCCEEC---
T ss_pred HHHHHHHHHHHHHhhcccCceeccCCCCC
Confidence 99999999999999999999999876543
No 5
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.1e-83 Score=729.08 Aligned_cols=335 Identities=31% Similarity=0.480 Sum_probs=250.3
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCCccCCCCCCceecceecCCCCChHHHHHHHHHHHHHHhh
Q 001290 19 GQEERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSVV 98 (1106)
Q Consensus 19 ~~eerIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~~~~s~~~~~F~FD~VF~~~atQeeVYe~vv~plV~svL 98 (1106)
+..++|+|+|||||++..|...+...++...++.++.+.+... ......|+||+||+++++|++||+.++.|+|++++
T Consensus 18 ~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~~--~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l 95 (388)
T 3bfn_A 18 GPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRN--HQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLL 95 (388)
T ss_dssp SCCCCCEEEEEECCCC-------------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGHHHHT
T ss_pred CCCCCEEEEEECCCCChhhhccCCCceEEecCCCeEEEecCCC--CCCeeEEEcceEecCCCCHhHHHHHHHHHHHHHhh
Confidence 5578999999999999999766555555556666665543211 12246899999999999999999999999999999
Q ss_pred cCCCcceeeeccCCCCCccccC------CChHhHHHHHHHhhhcc----ccceEEEEeeEEEEecccccccCCCCCCCce
Q 001290 99 NGINSTFFAYGQTSSGKTYTMG------GITEYAIQDIYDYIDTH----QEREFVLKFSAMEIYNESVRDLLSTDSTPLR 168 (1106)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~------GIi~rai~dLF~~I~~~----~~~~f~V~vS~lEIYNE~V~DLLs~~s~~L~ 168 (1106)
+|||+||||||||||||||||+ ||+||++.+||+.+... ....|.|++||+|||||+|+|||++...++.
T Consensus 96 ~G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~l~ 175 (388)
T 3bfn_A 96 EGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLV 175 (388)
T ss_dssp TTCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCSSCBCC
T ss_pred cCceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhccCCCCce
Confidence 9999999999999999999996 79999999999998753 3468999999999999999999999888999
Q ss_pred eeeCCCCCeEecCceEEEecCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEEE
Q 001290 169 LLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNF 248 (1106)
Q Consensus 169 i~ed~~~g~~V~gLtev~V~S~eE~l~LL~~G~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~f 248 (1106)
+++++.++++|.||+++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|.+.... .......|+|+|
T Consensus 176 ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~----~~~~~~~skL~l 251 (388)
T 3bfn_A 176 IREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERL----APFRQREGKLYL 251 (388)
T ss_dssp CEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESS----TTCCEEEEEEEE
T ss_pred EEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccC----CCCceeEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999876432 122357899999
Q ss_pred EecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCCccCCCCChhhHhhhhccCCCceeeEEEecCCCCcc
Q 001290 249 VDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSH 328 (1106)
Q Consensus 249 VDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~ 328 (1106)
||||||||..++++.|.|++|+.+||+||++||+||.+|+.+ ..||||||||||+||||+||||++|+|||||||+..+
T Consensus 252 VDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~-~~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~~~~ 330 (388)
T 3bfn_A 252 IDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQG-LPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRF 330 (388)
T ss_dssp EECCCTTC--------------CCCCHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCSGGG
T ss_pred EECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcC-CCCCcCcccHHHHHHHHhhCCCccEEEEEEECCcccc
Confidence 999999999999999999999999999999999999999986 4599999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcccccccccccCHHHH
Q 001290 329 VEQSRNTLLFASCAKEVATNAQVNVVMSDKAL 360 (1106)
Q Consensus 329 ~eETLsTLrFAsrAK~Ikn~p~vN~~~sd~al 360 (1106)
++||++||+||+|||+|+|+|.+|...+..++
T Consensus 331 ~~ETlsTLrfA~rak~I~n~p~~n~~~~~~~l 362 (388)
T 3bfn_A 331 YLDTVSALNFAARSKEVINRPFTNESLQPHAL 362 (388)
T ss_dssp HHHHHHHHHHHCSEEEEC--------------
T ss_pred HHHHHHHHHHHHHHhhCcCcCcccCCCCHHHH
Confidence 99999999999999999999999998877765
No 6
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=2.7e-82 Score=712.82 Aligned_cols=332 Identities=38% Similarity=0.578 Sum_probs=271.5
Q ss_pred CCCEEEEEEeCCCChhhhhcCCCcceEEec-CceEEecCCCc-----cCCCCCCceecceecCCCCChHHHHHHHHHHHH
Q 001290 21 EERILVFVRLRPLNEKEYARNDVSDWECIN-NNSIVFKNSLL-----ERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVT 94 (1106)
Q Consensus 21 eerIrV~VRVRPl~~~E~~~~~~~~~~~i~-~~tIv~~~~~~-----~~s~~~~~F~FD~VF~~~atQeeVYe~vv~plV 94 (1106)
.++|+|+||+||++.+|...+...++.+.. ..+|.+.++.. .....++.|.||+||+++++|++||+.+++|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv 82 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLI 82 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHHH
Confidence 468999999999999998877777776654 35666654321 112335789999999999999999999999999
Q ss_pred HHhhcCCCcceeeeccCCCCCccccC------CChHhHHHHHHHhhhc-cccceEEEEeeEEEEecccccccCCCCCCCc
Q 001290 95 LSVVNGINSTFFAYGQTSSGKTYTMG------GITEYAIQDIYDYIDT-HQEREFVLKFSAMEIYNESVRDLLSTDSTPL 167 (1106)
Q Consensus 95 ~svL~G~NatIfAYGQTGSGKTyTM~------GIi~rai~dLF~~I~~-~~~~~f~V~vS~lEIYNE~V~DLLs~~s~~L 167 (1106)
+++++|||+||||||||||||||||+ ||+||++++||+.+.. .....|.|++||+|||||+|+|||++ ..++
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~-~~~l 161 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKN-NTKL 161 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTT-EEEE
T ss_pred HHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEcccC-CcCc
Confidence 99999999999999999999999996 7999999999999974 45678999999999999999999984 4578
Q ss_pred eeeeCCCCCeEecCceEEEecCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEE
Q 001290 168 RLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVN 247 (1106)
Q Consensus 168 ~i~ed~~~g~~V~gLtev~V~S~eE~l~LL~~G~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~ 247 (1106)
.+++++.+|++|.|++++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|++.... .+......|+|+
T Consensus 162 ~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~---~~~~~~~~skl~ 238 (350)
T 2vvg_A 162 PLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVI---ENKEVIRVGKLN 238 (350)
T ss_dssp CEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC-------CEEEEEEEE
T ss_pred eeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeecc---CCCccEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999876432 233456789999
Q ss_pred EEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCCccCCCCChhhHhhhhccCCCceeeEEEecCCCCc
Q 001290 248 FVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARS 327 (1106)
Q Consensus 248 fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~ 327 (1106)
|||||||||.+++++.|.+++|+.+||+||++||+||.+|+.++ .||||||||||+||||+||||++|+|||||||+..
T Consensus 239 lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~ 317 (350)
T 2vvg_A 239 LVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGA-THIPYRDSKLTRLLQDSLGGNSKTLMCANISPAST 317 (350)
T ss_dssp EEECCCCCC---------------CTTHHHHHHHHHHHHHHHTC-SSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGG
T ss_pred EEeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCC-CCCCccccHHHHHHHHhcCCCccEEEEEEeCCccc
Confidence 99999999999999999999999999999999999999999864 79999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhhcccccccccccCH
Q 001290 328 HVEQSRNTLLFASCAKEVATNAQVNVVMSD 357 (1106)
Q Consensus 328 ~~eETLsTLrFAsrAK~Ikn~p~vN~~~sd 357 (1106)
+++||++||+||+|||+|+|+|.+|+.+.+
T Consensus 318 ~~~ETl~TL~fA~rak~i~n~~~~n~~~~~ 347 (350)
T 2vvg_A 318 NYDETMSTLRYADRAKQIKNKPRINEDPKD 347 (350)
T ss_dssp GHHHHHHHHHHHHHHTTCBCCCCCCBSCTT
T ss_pred cHHHHHHHHHHHHHHhhccccceecCCchh
Confidence 999999999999999999999999987654
No 7
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=5.2e-82 Score=714.64 Aligned_cols=339 Identities=35% Similarity=0.539 Sum_probs=298.9
Q ss_pred CCCEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCCccCCCCCCceecceecCCCCChHHHHHHHHHHHHHHhhcC
Q 001290 21 EERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNG 100 (1106)
Q Consensus 21 eerIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~~~~s~~~~~F~FD~VF~~~atQeeVYe~vv~plV~svL~G 100 (1106)
.++|+|+|||||++..|...+....+...+..++..... ....+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 4 ~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~v~~~~~----~~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~~~l~G 78 (369)
T 3cob_A 4 KGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWK----DDKAKQHMYDRVFDGNATQDDVFED-TKYLVQSAVDG 78 (369)
T ss_dssp CCBCEEEEEECCCCHHHHHTTCCBCEEECSSSEEEEECT----TSCEEEEECSEEECTTCCHHHHHHT-TTHHHHHHHTT
T ss_pred CCCeEEEEECCCCChhhccCCCcEEEEcCCcEEEEecCC----CCCceEEecCEEECCCCCcceehhh-hhhhhHhhhcC
Confidence 468999999999999998766654444444445543221 1124689999999999999999999 69999999999
Q ss_pred CCcceeeeccCCCCCccccC------CChHhHHHHHHHhhhcccc-ceEEEEeeEEEEecccccccCCCCC---CCceee
Q 001290 101 INSTFFAYGQTSSGKTYTMG------GITEYAIQDIYDYIDTHQE-REFVLKFSAMEIYNESVRDLLSTDS---TPLRLL 170 (1106)
Q Consensus 101 ~NatIfAYGQTGSGKTyTM~------GIi~rai~dLF~~I~~~~~-~~f~V~vS~lEIYNE~V~DLLs~~s---~~L~i~ 170 (1106)
||+||||||||||||||||+ ||+||++++||+.+..... ..|.|++||+|||||+|+|||++.. ..+.++
T Consensus 79 ~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l~i~ 158 (369)
T 3cob_A 79 YNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIK 158 (369)
T ss_dssp CEEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSSCCCCCEEE
T ss_pred CceEEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCcccCCcceEEE
Confidence 99999999999999999995 7999999999999977654 6899999999999999999998753 579999
Q ss_pred eCCCCCeEecCceEEEecCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEEEEe
Q 001290 171 DDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNFVD 250 (1106)
Q Consensus 171 ed~~~g~~V~gLtev~V~S~eE~l~LL~~G~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~fVD 250 (1106)
+++.++++|.|++++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|++.... ......|+|+|||
T Consensus 159 e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-----~~~~~~skL~lVD 233 (369)
T 3cob_A 159 KDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQ-----TQAIARGKLSFVD 233 (369)
T ss_dssp ECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETT-----TCCEEEEEEEEEE
T ss_pred ECCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCC-----CCcEEEEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999886432 3346789999999
Q ss_pred cCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCCccCCCCChhhHhhhhccCCCceeeEEEecCCCCcchH
Q 001290 251 LAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHVE 330 (1106)
Q Consensus 251 LAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~~e 330 (1106)
||||||..++++.|.+++|+.+||+||++||+||.+|+.+ ..||||||||||+||||+|||||+|+|||||||+..+++
T Consensus 234 LAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~-~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ 312 (369)
T 3cob_A 234 LAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSG-NQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLD 312 (369)
T ss_dssp CCCSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTT-CSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHH
T ss_pred CCCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcC-CCcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHH
Confidence 9999999999999999999999999999999999999986 569999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccccccccCHHHHHHHHHHHHHHHHH
Q 001290 331 QSRNTLLFASCAKEVATNAQVNVVMSDKALVKQLQKELARLEN 373 (1106)
Q Consensus 331 ETLsTLrFAsrAK~Ikn~p~vN~~~sd~alik~Lq~Ei~rLe~ 373 (1106)
||++||+||+|||.|+|+|.+|... ..+.+|+++++.|+.
T Consensus 313 ETl~TLrfA~rak~i~~~~~~n~~~---~ei~~L~~~l~~~~~ 352 (369)
T 3cob_A 313 ETHNSLTYASRVRSIVNDPSKNVSS---KEVARLKKLVSYWKE 352 (369)
T ss_dssp HHHHHHHHHHHHHTCBCCCCCCEEC---HHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHhhcccCCcccCCH---HHHHHHHHHHHHHHH
Confidence 9999999999999999999999876 233344444443333
No 8
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=3.3e-82 Score=714.58 Aligned_cols=331 Identities=38% Similarity=0.575 Sum_probs=277.1
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCCcceEEecC-ceEEecCCCccCCCCCCceecceecCCCCChHHHHHHHHHHHHHHh
Q 001290 19 GQEERILVFVRLRPLNEKEYARNDVSDWECINN-NSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSV 97 (1106)
Q Consensus 19 ~~eerIrV~VRVRPl~~~E~~~~~~~~~~~i~~-~tIv~~~~~~~~s~~~~~F~FD~VF~~~atQeeVYe~vv~plV~sv 97 (1106)
...++|+|+|||||++..|...+....+.+... ..+.+...........+.|+||+||+++++|++||+.++.|+|+++
T Consensus 5 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~ 84 (359)
T 1x88_A 5 EKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEV 84 (359)
T ss_dssp ----CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHHH
Confidence 456799999999999999988877777777654 4555443211111234689999999999999999999999999999
Q ss_pred hcCCCcceeeeccCCCCCccccC-----------------CChHhHHHHHHHhhhccccceEEEEeeEEEEecccccccC
Q 001290 98 VNGINSTFFAYGQTSSGKTYTMG-----------------GITEYAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLL 160 (1106)
Q Consensus 98 L~G~NatIfAYGQTGSGKTyTM~-----------------GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLL 160 (1106)
++|||+||||||||||||||||+ ||+||++++||+.+.. ....|.|++||+|||||+|+|||
T Consensus 85 l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~-~~~~~~v~vS~~EIYnE~i~DLL 163 (359)
T 1x88_A 85 IMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTD-NGTEFSVKVSLLEIYNEELFDLL 163 (359)
T ss_dssp HTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSS-SSEEEEEEEEEEEEETTEEEETT
T ss_pred hCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhc-cCceEEEEEEEEEEeCceeeehh
Confidence 99999999999999999999995 7999999999999865 45789999999999999999999
Q ss_pred CCCC---CCceeeeCCC--CCeEecCceEEEecCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccC
Q 001290 161 STDS---TPLRLLDDPE--KGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLG 235 (1106)
Q Consensus 161 s~~s---~~L~i~ed~~--~g~~V~gLtev~V~S~eE~l~LL~~G~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~ 235 (1106)
++.. ..+.+++++. +|++|.||+++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|.+.... .
T Consensus 164 ~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~--~ 241 (359)
T 1x88_A 164 NPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETT--I 241 (359)
T ss_dssp CTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEEC--T
T ss_pred cccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEeccc--C
Confidence 8765 4688999874 7899999999999999999999999999999999999999999999999999875432 1
Q ss_pred CCCceeEEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCCccCCCCChhhHhhhhccCCCce
Q 001290 236 AGNSSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNAR 315 (1106)
Q Consensus 236 ~~~~~~~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSk 315 (1106)
.+......|+|+|||||||||++++++.|.|++|+.+||+||++||+||.+|+.+ ..||||||||||+||||+||||++
T Consensus 242 ~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~-~~hvPyRdSkLT~lLqdsLgGnsk 320 (359)
T 1x88_A 242 DGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER-TPHVPYRESKLTRILQDSLGGRTR 320 (359)
T ss_dssp TSCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHTGGGSSSSSE
T ss_pred CCCceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcC-CCCCccccchHHHHHHHHhCCCCe
Confidence 2334567899999999999999999999999999999999999999999999985 579999999999999999999999
Q ss_pred eeEEEecCCCCcchHHHHHHHHHHHHHhhccccccccc
Q 001290 316 TAIICTMSPARSHVEQSRNTLLFASCAKEVATNAQVNV 353 (1106)
Q Consensus 316 T~mI~tISPs~~~~eETLsTLrFAsrAK~Ikn~p~vN~ 353 (1106)
|+|||||||+..+++||++||+||+|||+|+|+|.+|+
T Consensus 321 t~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~ 358 (359)
T 1x88_A 321 TSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358 (359)
T ss_dssp EEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred EEEEEEECCCcccHHHHHHHHHHHHHHhhccCcceeCC
Confidence 99999999999999999999999999999999999985
No 9
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=1e-81 Score=702.31 Aligned_cols=312 Identities=41% Similarity=0.618 Sum_probs=292.5
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCCccCCCCCCceecceecCCCCChHHHHHHHHHHHHHHhh
Q 001290 19 GQEERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSVV 98 (1106)
Q Consensus 19 ~~eerIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~~~~s~~~~~F~FD~VF~~~atQeeVYe~vv~plV~svL 98 (1106)
...++|+|+|||||++..|...++...+.+.++.++.+. .+.|.||+||+++++|++||+.+++|+|++++
T Consensus 4 ~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~---------~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l 74 (325)
T 1bg2_A 4 LAECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIA---------SKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVL 74 (325)
T ss_dssp CSSCEEEEEEEECCCCHHHHHHTCCBCCEEETTTEEEET---------TEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred CCCCCEEEEEEcCCCChhHhccCCeeEEEECCCCeEEEC---------CEEEECCeEeCCCCCHHHHHHHHhhhhHHHHh
Confidence 447899999999999999998888888888888887763 25799999999999999999999999999999
Q ss_pred cCCCcceeeeccCCCCCccccC---------CChHhHHHHHHHhhhcc-ccceEEEEeeEEEEecccccccCCCCCCCce
Q 001290 99 NGINSTFFAYGQTSSGKTYTMG---------GITEYAIQDIYDYIDTH-QEREFVLKFSAMEIYNESVRDLLSTDSTPLR 168 (1106)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~---------GIi~rai~dLF~~I~~~-~~~~f~V~vS~lEIYNE~V~DLLs~~s~~L~ 168 (1106)
+|||+||||||||||||||||. ||+||++++||+.+... ....|.|++||+|||||+|+|||++...++.
T Consensus 75 ~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~l~ 154 (325)
T 1bg2_A 75 EGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLS 154 (325)
T ss_dssp TTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTTCCSBC
T ss_pred CCCeEEEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCCCCCce
Confidence 9999999999999999999996 69999999999999653 4678999999999999999999999888999
Q ss_pred eeeCCCCCeEecCceEEEecCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEEE
Q 001290 169 LLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNF 248 (1106)
Q Consensus 169 i~ed~~~g~~V~gLtev~V~S~eE~l~LL~~G~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~f 248 (1106)
+++++.++++|.|++++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+.... ......|+|+|
T Consensus 155 i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-----~~~~~~skl~l 229 (325)
T 1bg2_A 155 VHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQ-----TEQKLSGKLYL 229 (325)
T ss_dssp EEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETT-----TCCEEEEEEEE
T ss_pred EEECCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecC-----CCcEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999876432 33457899999
Q ss_pred EecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCCccCCCCChhhHhhhhccCCCceeeEEEecCCCCcc
Q 001290 249 VDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSH 328 (1106)
Q Consensus 249 VDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~ 328 (1106)
||||||||.+++++.|.+++|+.+||+||++||+||.+|+.+ ..||||||||||+||||+||||++|+|||||||+..+
T Consensus 230 VDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~-~~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~ 308 (325)
T 1bg2_A 230 VDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEG-STYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYN 308 (325)
T ss_dssp EECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGG
T ss_pred EECCCCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHcC-CCCCcccccHHHHHHHHHhCCCCcEEEEEEECCcccc
Confidence 999999999999999999999999999999999999999986 5799999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhc
Q 001290 329 VEQSRNTLLFASCAKEV 345 (1106)
Q Consensus 329 ~eETLsTLrFAsrAK~I 345 (1106)
++||++||+||+|||+|
T Consensus 309 ~~ETl~TL~fa~rak~I 325 (325)
T 1bg2_A 309 ESETKSTLLFGQRAKTI 325 (325)
T ss_dssp HHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHhccC
Confidence 99999999999999976
No 10
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=2.5e-81 Score=710.40 Aligned_cols=333 Identities=37% Similarity=0.590 Sum_probs=282.8
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCCccCCCCCCceecceecCCCCChHHHHHHHHHHHHHHh
Q 001290 18 AGQEERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSV 97 (1106)
Q Consensus 18 ~~~eerIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~~~~s~~~~~F~FD~VF~~~atQeeVYe~vv~plV~sv 97 (1106)
....++|+|+|||||++..|...+....+.+.++..+++..... ....+.|+||+||+++++|++||+.++.|+|+++
T Consensus 19 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~ 96 (373)
T 2wbe_C 19 KKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLD--SKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEV 96 (373)
T ss_dssp CCCCEECEEEEEECCCCHHHHHHTCCBCEEEETTTEEEESSSSS--STTCEEEECSEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEcCCCChhhhccCCCceEEEcCCCeEEEecCCC--CCCceEEeccEEeccccchhHHHHHHHHHHHHHH
Confidence 34567899999999999999887878888888888887765432 2235789999999999999999999999999999
Q ss_pred hcCCCcceeeeccCCCCCccccC-----------------CChHhHHHHHHHhhhccccceEEEEeeEEEEecccccccC
Q 001290 98 VNGINSTFFAYGQTSSGKTYTMG-----------------GITEYAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLL 160 (1106)
Q Consensus 98 L~G~NatIfAYGQTGSGKTyTM~-----------------GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLL 160 (1106)
++|||+||||||||||||||||+ ||+||++++||+.+... +..|.|++||+|||||+|+|||
T Consensus 97 l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~v~vS~~EIYnE~i~DLL 175 (373)
T 2wbe_C 97 LNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMM-EVEYTMRISYLELYNEELCDLL 175 (373)
T ss_dssp HHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHC-CSCEEEEEEEEEEETTEEEESS
T ss_pred hCCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhc-CceEEEEEEEEEEeCCeEEECC
Confidence 99999999999999999999995 68999999999998654 4689999999999999999999
Q ss_pred CCCC-CCceeeeCC--CCCeEecCceEEEecCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCC
Q 001290 161 STDS-TPLRLLDDP--EKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAG 237 (1106)
Q Consensus 161 s~~s-~~L~i~ed~--~~g~~V~gLtev~V~S~eE~l~LL~~G~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~ 237 (1106)
++.. ..+++++++ .++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+.... ..+
T Consensus 176 ~~~~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~--~~~ 253 (373)
T 2wbe_C 176 STDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENG--IEG 253 (373)
T ss_dssp CTTSCSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTC--TTT
T ss_pred CCCCCCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCC--CCC
Confidence 8764 468888874 56799999999999999999999999999999999999999999999999999875432 123
Q ss_pred CceeEEEeEEEEecCCCccccccccc-cccccccccchhhHHHHHHHHHHhcCCCCCccCCCCChhhHhhhhccCCCcee
Q 001290 238 NSSILSASVNFVDLAGSERASQTLNA-GARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNART 316 (1106)
Q Consensus 238 ~~~~~~SkL~fVDLAGSER~~kt~s~-G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT 316 (1106)
......|+|+|||||||||+.++++. |.|++|+.+||+||++||+||.+|+.+ ..||||||||||+||||+||||++|
T Consensus 254 ~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~-~~hvPyRdSkLT~lLqdsLgGnskt 332 (373)
T 2wbe_C 254 EDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDR-APHVPYRESKLTRLLQESLGGRTKT 332 (373)
T ss_dssp CCEEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHC-SSCCCGGGCHHHHHTHHHHHSSSEE
T ss_pred CcceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcC-CCcCccccchHHHHHHHHhCCCceE
Confidence 34467899999999999999999887 999999999999999999999999875 5799999999999999999999999
Q ss_pred eEEEecCCCCcchHHHHHHHHHHHHHhhcccccccccccC
Q 001290 317 AIICTMSPARSHVEQSRNTLLFASCAKEVATNAQVNVVMS 356 (1106)
Q Consensus 317 ~mI~tISPs~~~~eETLsTLrFAsrAK~Ikn~p~vN~~~s 356 (1106)
+|||||||+..+++||++||+||+|||+|+|+|.+|...+
T Consensus 333 ~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~~s 372 (373)
T 2wbe_C 333 SIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQKLT 372 (373)
T ss_dssp EEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEECC
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHHhhccccceeccccC
Confidence 9999999999999999999999999999999999998764
No 11
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=2.1e-81 Score=709.63 Aligned_cols=330 Identities=35% Similarity=0.554 Sum_probs=278.1
Q ss_pred CCCEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCCccCCCCCCceecceecCCC--------CChHHHHHHHHHH
Q 001290 21 EERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLERSVYPPAYTFDRVFGCE--------CPTRQVYEEAAKE 92 (1106)
Q Consensus 21 eerIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~~~~s~~~~~F~FD~VF~~~--------atQeeVYe~vv~p 92 (1106)
..+|+|+|||||++.+|...+..+.+.+.+..+++..+... ...++.|+||+||++. ++|++||+.+++|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~--~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~p 80 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQP--KETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEE 80 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTTCCBCEEEETTEEEECCTTCT--TSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHH
T ss_pred CCCcEEEEECCCCChhhccCCCCeEEEECCCcEEEeccCCC--CCCceEEecceEeecCccccccccCcHHHHHHHHHHH
Confidence 35799999999999999887777777766655544332211 1235789999999987 8999999999999
Q ss_pred HHHHhhcCCCcceeeeccCCCCCccccC--------CChHhHHHHHHHhhhccc--cceEEEEeeEEEEecccccccCCC
Q 001290 93 VTLSVVNGINSTFFAYGQTSSGKTYTMG--------GITEYAIQDIYDYIDTHQ--EREFVLKFSAMEIYNESVRDLLST 162 (1106)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM~--------GIi~rai~dLF~~I~~~~--~~~f~V~vS~lEIYNE~V~DLLs~ 162 (1106)
+|+++++|||+||||||||||||||||+ ||+||++++||+.+.... ...|.|++||+|||||+|+|||++
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~ 160 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNP 160 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCT
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEcccc
Confidence 9999999999999999999999999995 799999999999997653 568999999999999999999998
Q ss_pred CC-CCceeeeCCCCCeEecCceEEEecCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCcee
Q 001290 163 DS-TPLRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSI 241 (1106)
Q Consensus 163 ~s-~~L~i~ed~~~g~~V~gLtev~V~S~eE~l~LL~~G~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~ 241 (1106)
.. ..+++++++.+|++|.||+++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|++..... ..+....
T Consensus 161 ~~~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-~~~~~~~ 239 (366)
T 2zfi_A 161 KNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDA-ETNITTE 239 (366)
T ss_dssp TTCSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECT-TTTCEEE
T ss_pred ccCCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccC-CCCccce
Confidence 65 579999999999999999999999999999999999999999999999999999999999998764431 1222345
Q ss_pred EEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCC-----------CCCccCCCCChhhHhhhhcc
Q 001290 242 LSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKG-----------RNAHIPYRDSKLTRILQNSL 310 (1106)
Q Consensus 242 ~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~g-----------k~~hIPYRDSKLTrLLqdsL 310 (1106)
..|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.+ +..||||||||||+||||+|
T Consensus 240 ~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqdsL 319 (366)
T 2zfi_A 240 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENL 319 (366)
T ss_dssp EEEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGS
T ss_pred eEeEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHHHHh
Confidence 7899999999999999999999999999999999999999999999752 35799999999999999999
Q ss_pred CCCceeeEEEecCCCCcchHHHHHHHHHHHHHhhccccccccc
Q 001290 311 GGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVATNAQVNV 353 (1106)
Q Consensus 311 GGNSkT~mI~tISPs~~~~eETLsTLrFAsrAK~Ikn~p~vN~ 353 (1106)
|||++|+|||||||+..+++||++||+||+|||+|+|+|.++.
T Consensus 320 gGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~~ 362 (366)
T 2zfi_A 320 GGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH 362 (366)
T ss_dssp STTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC----------
T ss_pred CCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCCC
Confidence 9999999999999999999999999999999999999998864
No 12
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=8.9e-81 Score=718.95 Aligned_cols=334 Identities=34% Similarity=0.536 Sum_probs=274.6
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCCcceEEecCc-eEEecCCC-cc----------CCCCCCceecceecCC-------
Q 001290 18 AGQEERILVFVRLRPLNEKEYARNDVSDWECINNN-SIVFKNSL-LE----------RSVYPPAYTFDRVFGC------- 78 (1106)
Q Consensus 18 ~~~eerIrV~VRVRPl~~~E~~~~~~~~~~~i~~~-tIv~~~~~-~~----------~s~~~~~F~FD~VF~~------- 78 (1106)
.+..++|+|+|||||++++|...+..+.+.+.... .+.+..+. .. .....+.|+||+||++
T Consensus 34 ~~~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~ 113 (443)
T 2owm_A 34 KDPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEH 113 (443)
T ss_dssp CCCCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTSTT
T ss_pred CCCCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCcc
Confidence 34567999999999999999888777666655432 23222211 00 1123568999999976
Q ss_pred CCChHHHHHHHHHHHHHHhhcCCCcceeeeccCCCCCccccC------CChHhHHHHHHHhhhcc----ccceEEEEeeE
Q 001290 79 ECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG------GITEYAIQDIYDYIDTH----QEREFVLKFSA 148 (1106)
Q Consensus 79 ~atQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~------GIi~rai~dLF~~I~~~----~~~~f~V~vS~ 148 (1106)
.++|++||+.++.|+|+++++|||+||||||||||||||||+ ||+||++++||+.|... .+..|.|+|||
T Consensus 114 ~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS~ 193 (443)
T 2owm_A 114 YATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSY 193 (443)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEEE
T ss_pred CCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHHHHHHHhhhcccCCceEEEEEEE
Confidence 489999999999999999999999999999999999999996 79999999999999764 35789999999
Q ss_pred EEEecccccccCCCCC-----CCceeeeCCCCCeEecCceEEEecCHHHHHHHHHHHHhhccccccccCCCCCCceEEEE
Q 001290 149 MEIYNESVRDLLSTDS-----TPLRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILR 223 (1106)
Q Consensus 149 lEIYNE~V~DLLs~~s-----~~L~i~ed~~~g~~V~gLtev~V~S~eE~l~LL~~G~~~R~~asT~~N~~SSRSHaIft 223 (1106)
+|||||+|||||++.. ..+.+++++.+|++|.||+++.|.+++|++.+|..|.++|++++|.||..|||||+||+
T Consensus 194 lEIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ift 273 (443)
T 2owm_A 194 FEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFT 273 (443)
T ss_dssp EEEETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEEEEEE
T ss_pred EEEECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCCCeEEEE
Confidence 9999999999998732 35999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecccccCCCCceeEEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCC-----------
Q 001290 224 LTIESSAREYLGAGNSSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRN----------- 292 (1106)
Q Consensus 224 I~Ie~~~~e~~~~~~~~~~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~----------- 292 (1106)
|+|++..... ..+......|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.++.
T Consensus 274 i~v~~~~~~~-~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~ 352 (443)
T 2owm_A 274 IMLKQIHHDL-ETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKS 352 (443)
T ss_dssp EEEEEEC--------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC--------------
T ss_pred EEEEEeeccc-CCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhccccccccccccccc
Confidence 9998764321 1223345789999999999999999999999999999999999999999999986432
Q ss_pred ----------CccCCCCChhhHhhhhccCCCceeeEEEecCCCCcchHHHHHHHHHHHHHhhcccccccccc
Q 001290 293 ----------AHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVATNAQVNVV 354 (1106)
Q Consensus 293 ----------~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~~eETLsTLrFAsrAK~Ikn~p~vN~~ 354 (1106)
.|||||||||||||||+||||++|+|||||||+ +++||++||+||+|||+|+|+|.+|.+
T Consensus 353 g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~vN~~ 422 (443)
T 2owm_A 353 GRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQV 422 (443)
T ss_dssp -----------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCCCCC
T ss_pred ccccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccceeccc
Confidence 399999999999999999999999999999997 599999999999999999999999984
No 13
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=5.8e-81 Score=703.51 Aligned_cols=324 Identities=37% Similarity=0.555 Sum_probs=261.8
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCCcc----------------CCCCCCceecceecCCCCCh
Q 001290 19 GQEERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLE----------------RSVYPPAYTFDRVFGCECPT 82 (1106)
Q Consensus 19 ~~eerIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~~~----------------~s~~~~~F~FD~VF~~~atQ 82 (1106)
+-.++|+|+|||||++.+|...+....+.+.++.++++.+.... ....+..|.||+||+++++|
T Consensus 7 d~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q 86 (355)
T 3lre_A 7 DLCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETSTQ 86 (355)
T ss_dssp -----CEEEEEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEECTTCCH
T ss_pred hccCCCEEEEEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCCCCh
Confidence 34578999999999999999999888888888887776543211 01124579999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCcceeeeccCCCCCccccC------CChHhHHHHHHHhhhccc-cceEEEEeeEEEEeccc
Q 001290 83 RQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG------GITEYAIQDIYDYIDTHQ-EREFVLKFSAMEIYNES 155 (1106)
Q Consensus 83 eeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~------GIi~rai~dLF~~I~~~~-~~~f~V~vS~lEIYNE~ 155 (1106)
++||+.++.|+|+++++|||+||||||||||||||||+ ||+|+++.+||..+.... ...|.|.+||+|||||+
T Consensus 87 ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS~~EIYnE~ 166 (355)
T 3lre_A 87 SEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQ 166 (355)
T ss_dssp HHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEETTE
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhhccCceEEEEEEEEEEECCE
Confidence 99999999999999999999999999999999999996 799999999999997644 56899999999999999
Q ss_pred ccccCCCCCCCceeeeCCCCCeEecCceEEEecCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccC
Q 001290 156 VRDLLSTDSTPLRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLG 235 (1106)
Q Consensus 156 V~DLLs~~s~~L~i~ed~~~g~~V~gLtev~V~S~eE~l~LL~~G~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~ 235 (1106)
|+|||++. .++.+++++.+|++|.||+++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+.....
T Consensus 167 i~DLL~~~-~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-- 243 (355)
T 3lre_A 167 IRDLLVNS-GPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTA-- 243 (355)
T ss_dssp EEESSSCC-CCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEEEEETTS--
T ss_pred EEECcCCC-CCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEEEecCCC--
Confidence 99999864 579999999999999999999999999999999999999999999999999999999999999875432
Q ss_pred CCCceeEEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCC--CCCccCCCCChhhHhhhhccCCC
Q 001290 236 AGNSSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKG--RNAHIPYRDSKLTRILQNSLGGN 313 (1106)
Q Consensus 236 ~~~~~~~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~g--k~~hIPYRDSKLTrLLqdsLGGN 313 (1106)
........|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.+ +..||||||||||+||||+||||
T Consensus 244 ~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lL~dsLgGn 323 (355)
T 3lre_A 244 SINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGN 323 (355)
T ss_dssp CTTCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC--------CCGGGSHHHHHTTTTSSTT
T ss_pred CCCCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHHHHHHHhcCCC
Confidence 2223456799999999999999999999999999999999999999999999875 34699999999999999999999
Q ss_pred ceeeEEEecCCCCcchHHHHHHHHHHHHHhhc
Q 001290 314 ARTAIICTMSPARSHVEQSRNTLLFASCAKEV 345 (1106)
Q Consensus 314 SkT~mI~tISPs~~~~eETLsTLrFAsrAK~I 345 (1106)
|+|+|||||||+..+++||++||+||+|||+|
T Consensus 324 skt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 324 CQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp SEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred ceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999986
No 14
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=1e-80 Score=699.06 Aligned_cols=319 Identities=38% Similarity=0.569 Sum_probs=265.8
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCCccCCCCCCceecceecCCCCChHHHHHHHHHHHHHHh
Q 001290 18 AGQEERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSV 97 (1106)
Q Consensus 18 ~~~eerIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~~~~s~~~~~F~FD~VF~~~atQeeVYe~vv~plV~sv 97 (1106)
...+++|+|+|||||++.+|...+...++.+..+...+... .++.|.||+||+++++|++||+.++.|+|+++
T Consensus 7 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~-------~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~ 79 (344)
T 4a14_A 7 GAEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLG-------RDRHFGFHVVLAEDAGQEAVYQACVQPLLEAF 79 (344)
T ss_dssp --CCCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEET-------TTEEEECSEEECTTCCHHHHHHHHTHHHHHHH
T ss_pred CccccceEEEEEecccchHHHhccCeeEEEEcCCCceEEec-------ccceEEEEEEEecCcchhHHHHHHHHHHHHHH
Confidence 46788999999999999999887777766665543332221 14689999999999999999999999999999
Q ss_pred hcCCCcceeeeccCCCCCccccC------------CChHhHHHHHHHhhhccccceEEEEeeEEEEecccccccCCCCC-
Q 001290 98 VNGINSTFFAYGQTSSGKTYTMG------------GITEYAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLLSTDS- 164 (1106)
Q Consensus 98 L~G~NatIfAYGQTGSGKTyTM~------------GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLLs~~s- 164 (1106)
++|||+||||||||||||||||. ||+||++++||+.+.......|.|++||+|||||+|+|||++..
T Consensus 80 l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~ 159 (344)
T 4a14_A 80 FEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTA 159 (344)
T ss_dssp HTTCCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHCTTSEEEEEEEEEEEETTEEEETTSSCCC
T ss_pred HhhcCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccccceeeEEEEehhhhhHHHHHHHHHhccc
Confidence 99999999999999999999994 89999999999999988888999999999999999999998643
Q ss_pred -CCceeeeCCCCCeEecCceEEEecCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccC---CCCce
Q 001290 165 -TPLRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLG---AGNSS 240 (1106)
Q Consensus 165 -~~L~i~ed~~~g~~V~gLtev~V~S~eE~l~LL~~G~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~---~~~~~ 240 (1106)
.++.+++++.++++|.|++++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|++....... .....
T Consensus 160 ~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~ 239 (344)
T 4a14_A 160 SRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQ 239 (344)
T ss_dssp GGGCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC------------C
T ss_pred cccceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCccccc
Confidence 57999999999999999999999999999999999999999999999999999999999999986532111 12334
Q ss_pred eEEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCC--CCCccCCCCChhhHhhhhccCCCceeeE
Q 001290 241 ILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKG--RNAHIPYRDSKLTRILQNSLGGNARTAI 318 (1106)
Q Consensus 241 ~~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~g--k~~hIPYRDSKLTrLLqdsLGGNSkT~m 318 (1106)
...|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.+ +..||||||||||+||||+||||++|+|
T Consensus 240 ~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~m 319 (344)
T 4a14_A 240 LLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVM 319 (344)
T ss_dssp EEEEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTTSEEEE
T ss_pred eeeeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCCcceEE
Confidence 67899999999999999999999999999999999999999999999864 3469999999999999999999999999
Q ss_pred EEecCCCCcchHHHHHHHHHHHHHh
Q 001290 319 ICTMSPARSHVEQSRNTLLFASCAK 343 (1106)
Q Consensus 319 I~tISPs~~~~eETLsTLrFAsrAK 343 (1106)
||||||+..+++||++||+||+|||
T Consensus 320 I~~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 320 IACVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp EEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred EEEeCCCccchhHHhhhhhhhhhcC
Confidence 9999999999999999999999996
No 15
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=2.4e-79 Score=690.14 Aligned_cols=320 Identities=35% Similarity=0.559 Sum_probs=258.7
Q ss_pred CEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCC-----ccCCCCCCceecceec--------CCCCChHHHHHHH
Q 001290 23 RILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSL-----LERSVYPPAYTFDRVF--------GCECPTRQVYEEA 89 (1106)
Q Consensus 23 rIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~-----~~~s~~~~~F~FD~VF--------~~~atQeeVYe~v 89 (1106)
+|+|+|||||++.+|...+..+.+.+.+.. +++.+.. ......++.|.||+|| ++.++|++||+.+
T Consensus 2 ~VkV~vRvRPl~~~E~~~~~~~vv~~~~~~-~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~ 80 (354)
T 3gbj_A 2 KVKVAVRIRPMNRRETDLHTKCVVDVDANK-VILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCL 80 (354)
T ss_dssp CEEEEEEECCCCHHHHHHTCCBCEEEETTE-EEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHHH
T ss_pred CcEEEEECCCCChhhhccCCceEEEeCCCe-EEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHHh
Confidence 799999999999999988877777666554 4443221 1112346789999999 4568999999999
Q ss_pred HHHHHHHhhcCCCcceeeeccCCCCCccccC------CChHhHHHHHHHhhhcc--ccceEEEEeeEEEEecccccccCC
Q 001290 90 AKEVTLSVVNGINSTFFAYGQTSSGKTYTMG------GITEYAIQDIYDYIDTH--QEREFVLKFSAMEIYNESVRDLLS 161 (1106)
Q Consensus 90 v~plV~svL~G~NatIfAYGQTGSGKTyTM~------GIi~rai~dLF~~I~~~--~~~~f~V~vS~lEIYNE~V~DLLs 161 (1106)
+.|+|+++++|||+||||||||||||||||+ ||+||++++||+.+... ....|.|+|||+|||||+|+|||+
T Consensus 81 ~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~ 160 (354)
T 3gbj_A 81 GENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLD 160 (354)
T ss_dssp HHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEETTC
T ss_pred hHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeEccC
Confidence 9999999999999999999999999999995 79999999999998643 457899999999999999999998
Q ss_pred CCC--CCceeeeCCCCCeEecCceEEEecCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCc
Q 001290 162 TDS--TPLRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNS 239 (1106)
Q Consensus 162 ~~s--~~L~i~ed~~~g~~V~gLtev~V~S~eE~l~LL~~G~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~ 239 (1106)
+.. .++++++++.+|++|.||+++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+...+. ..+..
T Consensus 161 ~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-~~~~~ 239 (354)
T 3gbj_A 161 PKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDV-KSGTS 239 (354)
T ss_dssp ------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECT-TSCEE
T ss_pred CCCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEeccc-CCCCC
Confidence 764 579999999999999999999999999999999999999999999999999999999999998764321 22344
Q ss_pred eeEEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcC-----CCCCccCCCCChhhHhhhhccCCCc
Q 001290 240 SILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSK-----GRNAHIPYRDSKLTRILQNSLGGNA 314 (1106)
Q Consensus 240 ~~~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~-----gk~~hIPYRDSKLTrLLqdsLGGNS 314 (1106)
....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+. ++..||||||||||+||||+|||||
T Consensus 240 ~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGns 319 (354)
T 3gbj_A 240 GEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNS 319 (354)
T ss_dssp EEEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHSTTC
T ss_pred CeeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHHhCCCC
Confidence 56789999999999999999999999999999999999999999999975 3467999999999999999999999
Q ss_pred eeeEEEecCCCCcchHHHHHHHHHHHHHhh
Q 001290 315 RTAIICTMSPARSHVEQSRNTLLFASCAKE 344 (1106)
Q Consensus 315 kT~mI~tISPs~~~~eETLsTLrFAsrAK~ 344 (1106)
+|+|||||||+..+++||++||+||.+|+.
T Consensus 320 kt~mIa~vsP~~~~~~ETlsTLr~a~~~~~ 349 (354)
T 3gbj_A 320 KTAMVATVSPAADNYDETLSTLRYADRAKH 349 (354)
T ss_dssp EEEEEEEECCBGGGHHHHHHHHHHHHHHC-
T ss_pred eEEEEEEeCCCcchHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999985
No 16
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-79 Score=690.60 Aligned_cols=317 Identities=33% Similarity=0.512 Sum_probs=255.0
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCCcceEEe-cCceEEecCCCc------cCCCCCCceecceecCCCCChHHHHHHHHH
Q 001290 19 GQEERILVFVRLRPLNEKEYARNDVSDWECI-NNNSIVFKNSLL------ERSVYPPAYTFDRVFGCECPTRQVYEEAAK 91 (1106)
Q Consensus 19 ~~eerIrV~VRVRPl~~~E~~~~~~~~~~~i-~~~tIv~~~~~~------~~s~~~~~F~FD~VF~~~atQeeVYe~vv~ 91 (1106)
+..++|+|||||||++..|.. .+... +..+|.+..... ........|.||+||+ +++|++||+.+++
T Consensus 21 ~~~~~i~V~vRvRP~~~~e~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~ 94 (359)
T 3nwn_A 21 GTRKKVHAFVRVKPTDDFAHE-----MIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAK 94 (359)
T ss_dssp ---CCEEEEEEECCCSSCCTT-----TEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTH
T ss_pred CCCCCEEEEEEcCCCCccccc-----ceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHH
Confidence 557899999999999865532 23333 344555443321 1122345799999997 6899999999999
Q ss_pred HHHHHhhcCCCcceeeeccCCCCCccccC---------CChHhHHHHHHHhhhccccceEEEEeeEEEEecccccccCCC
Q 001290 92 EVTLSVVNGINSTFFAYGQTSSGKTYTMG---------GITEYAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLLST 162 (1106)
Q Consensus 92 plV~svL~G~NatIfAYGQTGSGKTyTM~---------GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLLs~ 162 (1106)
|+|+++++|||+||||||||||||||||+ ||+||++++||+.+.......|.|++||+|||||+|+|||++
T Consensus 95 plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~ 174 (359)
T 3nwn_A 95 DVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLST 174 (359)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTSS
T ss_pred HHHHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcCCCCcEEEEEEEEEEecccccccccc
Confidence 99999999999999999999999999996 799999999999999888899999999999999999999985
Q ss_pred CC------CCceeeeCCCCCeEecCceEEEecCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCC
Q 001290 163 DS------TPLRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGA 236 (1106)
Q Consensus 163 ~s------~~L~i~ed~~~g~~V~gLtev~V~S~eE~l~LL~~G~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~ 236 (1106)
.. ..+.+.+++ .|++|.|++++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|.+.... .
T Consensus 175 ~~~~~~~~~~~~~~~~~-~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~---~ 250 (359)
T 3nwn_A 175 LPYVGPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRT---L 250 (359)
T ss_dssp STTSCTTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-------
T ss_pred ccccccccccceEEecC-CceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeeccc---c
Confidence 32 346677765 5799999999999999999999999999999999999999999999999999876543 2
Q ss_pred CCceeEEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCCccCCCCChhhHhhhhccCCCcee
Q 001290 237 GNSSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNART 316 (1106)
Q Consensus 237 ~~~~~~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT 316 (1106)
.......|+|+|||||||||++++++.|.+++|+.+||+||++||+||.+|+.++..||||||||||+||||+|||||+|
T Consensus 251 ~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGnskt 330 (359)
T 3nwn_A 251 SEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNM 330 (359)
T ss_dssp ---CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEE
T ss_pred cCcccccccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCCccE
Confidence 23345789999999999999999999999999999999999999999999998777899999999999999999999999
Q ss_pred eEEEecCCCCcchHHHHHHHHHHHHHhhc
Q 001290 317 AIICTMSPARSHVEQSRNTLLFASCAKEV 345 (1106)
Q Consensus 317 ~mI~tISPs~~~~eETLsTLrFAsrAK~I 345 (1106)
+|||||||+..+++||++||+||+|||.|
T Consensus 331 ~mI~~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 331 VLVTNIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp EEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999986
No 17
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=7e-79 Score=691.84 Aligned_cols=318 Identities=34% Similarity=0.512 Sum_probs=263.3
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCCccC----CCCCCceecceecCCCCChHHHHHHHHHHHH
Q 001290 19 GQEERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLER----SVYPPAYTFDRVFGCECPTRQVYEEAAKEVT 94 (1106)
Q Consensus 19 ~~eerIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~~~~----s~~~~~F~FD~VF~~~atQeeVYe~vv~plV 94 (1106)
...++|+|+|||||++.+|...+....+.+.++.++++..+.... ....+.|+||+||+++++|++||+.+++|+|
T Consensus 48 ~~~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ~~Vy~~~~~plv 127 (387)
T 2heh_A 48 IEEHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLV 127 (387)
T ss_dssp CCCCSEEEEEEECCCCHHHHHTTCCBCEECCBSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCCCeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCCccccccccccccEEeeeEEEecCCCceeehhhhHHHHH
Confidence 447899999999999999998887777777777777664332110 1123589999999999999999999999999
Q ss_pred HHhhcCCCcceeeeccCCCCCccccC------------CChHhHHHHHHHhhhcc--ccceEEEEeeEEEEecccccccC
Q 001290 95 LSVVNGINSTFFAYGQTSSGKTYTMG------------GITEYAIQDIYDYIDTH--QEREFVLKFSAMEIYNESVRDLL 160 (1106)
Q Consensus 95 ~svL~G~NatIfAYGQTGSGKTyTM~------------GIi~rai~dLF~~I~~~--~~~~f~V~vS~lEIYNE~V~DLL 160 (1106)
+++++|||+||||||||||||||||. ||+|+++++||..+... ....|.|++||+|||||+|+|||
T Consensus 128 ~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v~DLL 207 (387)
T 2heh_A 128 QTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLL 207 (387)
T ss_dssp HHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTEEEETT
T ss_pred HHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCeEEECC
Confidence 99999999999999999999999996 48999999999998754 35689999999999999999999
Q ss_pred CCCCCCceeeeCCCCCeEecCceEEEecCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCce
Q 001290 161 STDSTPLRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSS 240 (1106)
Q Consensus 161 s~~s~~L~i~ed~~~g~~V~gLtev~V~S~eE~l~LL~~G~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~ 240 (1106)
++. ..+.+++|+.++++|.||+++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+..
T Consensus 208 ~~~-~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~---------- 276 (387)
T 2heh_A 208 NKK-AKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKG---------- 276 (387)
T ss_dssp TTT-EECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEESSS----------
T ss_pred CCC-ccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEEECC----------
Confidence 865 569999999999999999999999999999999999999999999999999999999999997641
Q ss_pred eEEEeEEEEecCCCccccccc-cccccccccccchhhHHHHHHHHHHhcCCCCCccCCCCChhhHhhhhc-cCCCceeeE
Q 001290 241 ILSASVNFVDLAGSERASQTL-NAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNS-LGGNARTAI 318 (1106)
Q Consensus 241 ~~~SkL~fVDLAGSER~~kt~-s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqds-LGGNSkT~m 318 (1106)
...|+|+|||||||||..+++ +.|.+++|+++||+||++||+||.+|+.+ ..||||||||||+||||+ |||||+|+|
T Consensus 277 ~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~-~~hvPYRdSKLTrlLqdsllGgnskT~m 355 (387)
T 2heh_A 277 RMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN-KAHTPFRESKLTQVLRDSFIGENSRTCM 355 (387)
T ss_dssp SEEEEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHTGGGGSSTTEEEEE
T ss_pred eeeeEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcC-CCCCCccccHHHHHHhhhccCCCCeEEE
Confidence 368999999999999998876 45678899999999999999999999974 679999999999999999 699999999
Q ss_pred EEecCCCCcchHHHHHHHHHHHHHhhcccc
Q 001290 319 ICTMSPARSHVEQSRNTLLFASCAKEVATN 348 (1106)
Q Consensus 319 I~tISPs~~~~eETLsTLrFAsrAK~Ikn~ 348 (1106)
||||||+..+++||++||+||+|||+|++.
T Consensus 356 Ia~isP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 356 IATISPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp EEEECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred EEEeCCccchHHHHHHHHHHHHHhccCcCC
Confidence 999999999999999999999999999864
No 18
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.3e-78 Score=678.49 Aligned_cols=314 Identities=33% Similarity=0.546 Sum_probs=268.1
Q ss_pred CCCEEEEEEeCCCChhhhhcCCCcceEEe---cCceEEecCCCccCCCCCCceecceecCCCCChHHHHHHHHHHHHHHh
Q 001290 21 EERILVFVRLRPLNEKEYARNDVSDWECI---NNNSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSV 97 (1106)
Q Consensus 21 eerIrV~VRVRPl~~~E~~~~~~~~~~~i---~~~tIv~~~~~~~~s~~~~~F~FD~VF~~~atQeeVYe~vv~plV~sv 97 (1106)
.++|+|+|||||++..|........+.+. ++..+..... ..+..|.||+||+++++|++||+.+ .|+|+++
T Consensus 3 ~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~f~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~ 76 (330)
T 2h58_A 3 KGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHK-----GKPVSFELDKVFSPQASQQDVFQEV-QALVTSC 76 (330)
T ss_dssp --CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEET-----TEEEEEECSEEECTTCCHHHHHTTT-HHHHHHH
T ss_pred CCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcCC-----CCeeEEecCeEeCCCCCcHhHHHHH-HHHHHHH
Confidence 57899999999999988654332222222 2233333221 1246899999999999999999985 8999999
Q ss_pred hcCCCcceeeeccCCCCCccccC------CChHhHHHHHHHhhhccc-cceEEEEeeEEEEecccccccCCCCCC---Cc
Q 001290 98 VNGINSTFFAYGQTSSGKTYTMG------GITEYAIQDIYDYIDTHQ-EREFVLKFSAMEIYNESVRDLLSTDST---PL 167 (1106)
Q Consensus 98 L~G~NatIfAYGQTGSGKTyTM~------GIi~rai~dLF~~I~~~~-~~~f~V~vS~lEIYNE~V~DLLs~~s~---~L 167 (1106)
++|||+||||||||||||||||+ ||+||++++||+.+.... +..|.|++||+|||||+|+|||++... .+
T Consensus 77 l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i 156 (330)
T 2h58_A 77 IDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEI 156 (330)
T ss_dssp HTTCCEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSCCCCCC
T ss_pred hCCCEEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhcccccccccceE
Confidence 99999999999999999999996 699999999999997643 568999999999999999999986542 35
Q ss_pred eeeeCCCCCeEecCceEEEecCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEE
Q 001290 168 RLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVN 247 (1106)
Q Consensus 168 ~i~ed~~~g~~V~gLtev~V~S~eE~l~LL~~G~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~ 247 (1106)
++.+++.++++|.|++++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+.... ......|+|+
T Consensus 157 ~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-----~~~~~~skL~ 231 (330)
T 2h58_A 157 RLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCS-----TGLRTTGKLN 231 (330)
T ss_dssp EECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETT-----TTEEEEEEEE
T ss_pred EEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecC-----CCcEEEEEEE
Confidence 55678899999999999999999999999999999999999999999999999999999876432 3346789999
Q ss_pred EEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCCccCCCCChhhHhhhhccCCCceeeEEEecCCCCc
Q 001290 248 FVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARS 327 (1106)
Q Consensus 248 fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~ 327 (1106)
|||||||||..++++.|.|++|+.+||+||++||+||.+|+.+ ..||||||||||+||||+||||++|+|||||||+..
T Consensus 232 lVDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~-~~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~ 310 (330)
T 2h58_A 232 LVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSR-QGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEK 310 (330)
T ss_dssp EEECCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGG
T ss_pred EEeCCCCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcC-CCCCcccccHHHHHHHHHhCCCceEEEEEEeCCccc
Confidence 9999999999999999999999999999999999999999875 579999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhhcc
Q 001290 328 HVEQSRNTLLFASCAKEVA 346 (1106)
Q Consensus 328 ~~eETLsTLrFAsrAK~Ik 346 (1106)
+++||++||+||+|||+|+
T Consensus 311 ~~~ETl~TL~fA~rak~i~ 329 (330)
T 2h58_A 311 NTSETLYSLKFAERVRSVE 329 (330)
T ss_dssp GHHHHHHHHHHHHHHC---
T ss_pred cHHHHHHHHHHHHHHhhCc
Confidence 9999999999999999986
No 19
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=1.5e-78 Score=693.08 Aligned_cols=320 Identities=34% Similarity=0.507 Sum_probs=264.0
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCCccC----CCCCCceecceecCCCCChHHHHHHHHHHHH
Q 001290 19 GQEERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLER----SVYPPAYTFDRVFGCECPTRQVYEEAAKEVT 94 (1106)
Q Consensus 19 ~~eerIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~~~~----s~~~~~F~FD~VF~~~atQeeVYe~vv~plV 94 (1106)
...++|+|+||+||++..|...+....+.+.++.++++..+.... ....+.|+||+||+++++|++||+.++.|+|
T Consensus 68 ~~~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~Vy~~~~~plV 147 (410)
T 1v8k_A 68 IEEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLV 147 (410)
T ss_dssp TSCCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCCCeEEEEEeCCCChhHhhcCCccEEEECCCCEEEEecCcccccccccccceEEeeeEEEecCCChhhhhHHHHHHHH
Confidence 347899999999999999998887777777777777665332110 1123579999999999999999999999999
Q ss_pred HHhhcCCCcceeeeccCCCCCccccC------------CChHhHHHHHHHhhhcc--ccceEEEEeeEEEEecccccccC
Q 001290 95 LSVVNGINSTFFAYGQTSSGKTYTMG------------GITEYAIQDIYDYIDTH--QEREFVLKFSAMEIYNESVRDLL 160 (1106)
Q Consensus 95 ~svL~G~NatIfAYGQTGSGKTyTM~------------GIi~rai~dLF~~I~~~--~~~~f~V~vS~lEIYNE~V~DLL 160 (1106)
+++++|||+||||||||||||||||+ ||+|+++++||..+... ....|.|++||+|||||+|+|||
T Consensus 148 ~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL 227 (410)
T 1v8k_A 148 QTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLL 227 (410)
T ss_dssp HHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEETT
T ss_pred HHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEEEEEeeCCEEEECC
Confidence 99999999999999999999999996 48999999999998754 35689999999999999999999
Q ss_pred CCCCCCceeeeCCCCCeEecCceEEEecCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCce
Q 001290 161 STDSTPLRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSS 240 (1106)
Q Consensus 161 s~~s~~L~i~ed~~~g~~V~gLtev~V~S~eE~l~LL~~G~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~ 240 (1106)
++. ..+.+++|+.++++|.||+++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|.+..
T Consensus 228 ~~~-~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~---------- 296 (410)
T 1v8k_A 228 NKK-AKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKG---------- 296 (410)
T ss_dssp TTT-EEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESSS----------
T ss_pred CCC-CCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEEeCC----------
Confidence 864 569999999999999999999999999999999999999999999999999999999999997641
Q ss_pred eEEEeEEEEecCCCccccccc-cccccccccccchhhHHHHHHHHHHhcCCCCCccCCCCChhhHhhhhc-cCCCceeeE
Q 001290 241 ILSASVNFVDLAGSERASQTL-NAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNS-LGGNARTAI 318 (1106)
Q Consensus 241 ~~~SkL~fVDLAGSER~~kt~-s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqds-LGGNSkT~m 318 (1106)
...|+|+|||||||||..+++ +.|.+++|+++||+||++||+||.+|+.+ ..||||||||||+||||+ |||||+|+|
T Consensus 297 ~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~-~~hIPYRdSKLTrLLqdsllGgnskT~m 375 (410)
T 1v8k_A 297 RLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN-KAHTPFRESKLTQVLRDSFIGENSRTCM 375 (410)
T ss_dssp SEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC-------CCCCHHHHHTTHHHHSSSEEEEE
T ss_pred cceeEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcC-CCCCCcccchhHHHHhhcccCCCceEEE
Confidence 368999999999999998876 45678899999999999999999999875 579999999999999999 699999999
Q ss_pred EEecCCCCcchHHHHHHHHHHHHHhhcccccc
Q 001290 319 ICTMSPARSHVEQSRNTLLFASCAKEVATNAQ 350 (1106)
Q Consensus 319 I~tISPs~~~~eETLsTLrFAsrAK~Ikn~p~ 350 (1106)
||||||+..+++||++||+||+|||.|..+|.
T Consensus 376 Ia~iSP~~~~~~ETlsTLrfA~rak~i~~~~~ 407 (410)
T 1v8k_A 376 IAMISPGISSCEYTLNTLRYADRVKELSHHHH 407 (410)
T ss_dssp EEEECCBGGGHHHHHHHHHHHHHHHTTC----
T ss_pred EEEeCCccccHHHHHHHHHHHHHhccCCCCCC
Confidence 99999999999999999999999999987764
No 20
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=1.4e-78 Score=682.85 Aligned_cols=321 Identities=31% Similarity=0.472 Sum_probs=257.1
Q ss_pred CCCEEEEEEeCCCChhhhhcCCCcceEEecC----ceEEecCCCccCCCCCCceecceecCCCCChHHHHHHHHHHHHHH
Q 001290 21 EERILVFVRLRPLNEKEYARNDVSDWECINN----NSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLS 96 (1106)
Q Consensus 21 eerIrV~VRVRPl~~~E~~~~~~~~~~~i~~----~tIv~~~~~~~~s~~~~~F~FD~VF~~~atQeeVYe~vv~plV~s 96 (1106)
.++|+|+|||||++..|...+....+...++ ..+.+.... ....+..|.||+||+++++|++||+.+ .|+|++
T Consensus 4 kgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f~FD~Vf~~~~~Q~~vf~~v-~~lv~~ 80 (349)
T 3t0q_A 4 RGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNE--GRILSYNFQFDMIFEPSHTNKEIFEEI-RQLVQS 80 (349)
T ss_dssp -CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC----CEEEEEEESEEECTTCCHHHHHHHH-HHHHHG
T ss_pred CCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCC--CcccceeeecCEEECCCccHHHHHHHH-HHHHHH
Confidence 4689999999999998876543333332221 234433221 112246899999999999999999985 689999
Q ss_pred hhcCCCcceeeeccCCCCCccccC----CChHhHHHHHHHhhhccc--cceEEEEeeEEEEecccccccCCCCC------
Q 001290 97 VVNGINSTFFAYGQTSSGKTYTMG----GITEYAIQDIYDYIDTHQ--EREFVLKFSAMEIYNESVRDLLSTDS------ 164 (1106)
Q Consensus 97 vL~G~NatIfAYGQTGSGKTyTM~----GIi~rai~dLF~~I~~~~--~~~f~V~vS~lEIYNE~V~DLLs~~s------ 164 (1106)
+++|||+||||||||||||||||+ ||+|+++++||+.+.... ...|.|++||+|||||+|+|||++..
T Consensus 81 ~l~G~n~tifAYGqTGSGKTyTm~g~~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~ 160 (349)
T 3t0q_A 81 SLDGYNVCIFAYGQTGSGKTYTMLNAGDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNID 160 (349)
T ss_dssp GGTTCEEEEEEECSTTSSHHHHHHSTTTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC---------
T ss_pred HHCCcceeEEEeCCCCCCCceEeCCCCCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhccccccccccccc
Confidence 999999999999999999999995 899999999999987643 45899999999999999999998643
Q ss_pred -----CCceeeeCC-CCCeEecCceEEEecCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCC
Q 001290 165 -----TPLRLLDDP-EKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGN 238 (1106)
Q Consensus 165 -----~~L~i~ed~-~~g~~V~gLtev~V~S~eE~l~LL~~G~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~ 238 (1106)
..+.+++++ .+|++|.|++++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|++.... .
T Consensus 161 ~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-----~ 235 (349)
T 3t0q_A 161 EILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLH-----T 235 (349)
T ss_dssp ------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEETT-----T
T ss_pred cccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEecC-----C
Confidence 456677665 45799999999999999999999999999999999999999999999999999876532 2
Q ss_pred ceeEEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCC--CCccCCCCChhhHhhhhccCCCcee
Q 001290 239 SSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGR--NAHIPYRDSKLTRILQNSLGGNART 316 (1106)
Q Consensus 239 ~~~~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk--~~hIPYRDSKLTrLLqdsLGGNSkT 316 (1106)
.....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.+. ..||||||||||+||||+||||++|
T Consensus 236 ~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt 315 (349)
T 3t0q_A 236 GETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKT 315 (349)
T ss_dssp CCEEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTTCEE
T ss_pred CCeeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCCceE
Confidence 33578999999999999999999999999999999999999999999998753 3599999999999999999999999
Q ss_pred eEEEecCCCCcchHHHHHHHHHHHHHhhccccc
Q 001290 317 AIICTMSPARSHVEQSRNTLLFASCAKEVATNA 349 (1106)
Q Consensus 317 ~mI~tISPs~~~~eETLsTLrFAsrAK~Ikn~p 349 (1106)
+|||||||+..+++||++||+||+|++.|+..+
T Consensus 316 ~mi~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 316 LMFVNIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp EEEEEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 999999999999999999999999999998654
No 21
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=1.3e-78 Score=685.21 Aligned_cols=321 Identities=32% Similarity=0.478 Sum_probs=274.1
Q ss_pred CEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCCcc----CCCCCCceecceecCCCCChHHHHHHHHHHHHHHhh
Q 001290 23 RILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLE----RSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSVV 98 (1106)
Q Consensus 23 rIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~~~----~s~~~~~F~FD~VF~~~atQeeVYe~vv~plV~svL 98 (1106)
.|+|+||+||++..|...+....+.+.++.+|.+..+... .......|.||+||+++++|++||+.+++|+|++++
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~ 80 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLY 80 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEEETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhhc
Confidence 5899999999999999888888888888888877543211 001235899999999999999999999999999999
Q ss_pred c-CCCcceeeeccCCCCCccccC-----------CChHhHHHHHHHhhhcc-ccceEEEEeeEEEEecccccccCCCCCC
Q 001290 99 N-GINSTFFAYGQTSSGKTYTMG-----------GITEYAIQDIYDYIDTH-QEREFVLKFSAMEIYNESVRDLLSTDST 165 (1106)
Q Consensus 99 ~-G~NatIfAYGQTGSGKTyTM~-----------GIi~rai~dLF~~I~~~-~~~~f~V~vS~lEIYNE~V~DLLs~~s~ 165 (1106)
+ |||+||||||||||||||||+ ||+|+++++||..+... .+..|.|++||+|||||+|+|||++..
T Consensus 81 ~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~- 159 (360)
T 1ry6_A 81 ENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRK- 159 (360)
T ss_dssp HHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC---
T ss_pred cCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccCCc-
Confidence 5 999999999999999999994 68999999999999764 356899999999999999999998753
Q ss_pred CceeeeCCCCCeEecCceEEEecCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEe
Q 001290 166 PLRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSAS 245 (1106)
Q Consensus 166 ~L~i~ed~~~g~~V~gLtev~V~S~eE~l~LL~~G~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~Sk 245 (1106)
.+.+++++.++++|.|++++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+... ....|+
T Consensus 160 ~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~--------~~~~sk 231 (360)
T 1ry6_A 160 MVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDINK--------NTSLGK 231 (360)
T ss_dssp ---------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETTT--------TEEEEE
T ss_pred cceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEeccC--------CcceeE
Confidence 577889999999999999999999999999999999999999999999999999999999986432 246799
Q ss_pred EEEEecCCCccccccccccc-cccccccchhhHHHHHHHHHHhcCCCCCccCCCCChhhHhhhhccCCCceeeEEEecCC
Q 001290 246 VNFVDLAGSERASQTLNAGA-RLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSP 324 (1106)
Q Consensus 246 L~fVDLAGSER~~kt~s~G~-rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISP 324 (1106)
|+|||||||||..++++.|. +++|+.+||+||++||+||.+|+.+ ..||||||||||+||||+|||||+|+|||||||
T Consensus 232 L~lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~-~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP 310 (360)
T 1ry6_A 232 IAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSD-KNHIPFRDSELTKVLRDIFVGKSKSIMIANISP 310 (360)
T ss_dssp EEEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTS-TTSCCGGGCHHHHHTGGGGSSSCEEEEEEEECC
T ss_pred EEEEECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcC-CCCCccccCHHHHHHHHHhCCCCeEEEEEEeCC
Confidence 99999999999999988764 6889999999999999999999875 579999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHhhccccccccc
Q 001290 325 ARSHVEQSRNTLLFASCAKEVATNAQVNV 353 (1106)
Q Consensus 325 s~~~~eETLsTLrFAsrAK~Ikn~p~vN~ 353 (1106)
+..+++||++||+||+|||+|+|.|..|.
T Consensus 311 ~~~~~~ETlsTLrfA~rak~i~n~~~~~~ 339 (360)
T 1ry6_A 311 TISCCEQTLNTLRYSSRVKNKGNSKLEGK 339 (360)
T ss_dssp BGGGHHHHHHHHHHHHHHCC---------
T ss_pred CcccHHHHHHHHHHHHHHhhcccCcccCC
Confidence 99999999999999999999999766554
No 22
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.8e-78 Score=684.56 Aligned_cols=319 Identities=34% Similarity=0.467 Sum_probs=247.1
Q ss_pred CCCCEEEEEEeCCCChhhhhcCCCcc-eEE------ecCceEEecCCCc--------cCCCCCCceecceecCCCCChHH
Q 001290 20 QEERILVFVRLRPLNEKEYARNDVSD-WEC------INNNSIVFKNSLL--------ERSVYPPAYTFDRVFGCECPTRQ 84 (1106)
Q Consensus 20 ~eerIrV~VRVRPl~~~E~~~~~~~~-~~~------i~~~tIv~~~~~~--------~~s~~~~~F~FD~VF~~~atQee 84 (1106)
-.++|+|+|||||++..|...+.... +.. .++.+|.+..+.. ........|+||+||+++++|++
T Consensus 20 ~~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~ 99 (376)
T 2rep_A 20 LKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVFPPGSGQDE 99 (376)
T ss_dssp ---CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSEEECTTCCHHH
T ss_pred cCCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEEcCCcccchh
Confidence 35789999999999999976542211 111 2345565543210 01123468999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCcceeeeccCCCCCccccC----------CChHhHHHHHHHhhhccc--cceEEEEeeEEEEe
Q 001290 85 VYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG----------GITEYAIQDIYDYIDTHQ--EREFVLKFSAMEIY 152 (1106)
Q Consensus 85 VYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~----------GIi~rai~dLF~~I~~~~--~~~f~V~vS~lEIY 152 (1106)
||+.+ .|+|+++++|||+||||||||||||||||+ ||+||++++||+.+.... ...|.|++||+|||
T Consensus 100 Vy~~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIY 178 (376)
T 2rep_A 100 VFEEI-AMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIY 178 (376)
T ss_dssp HHHHH-HHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEEEE
T ss_pred hhhhH-HHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEEEEEEEEEEE
Confidence 99996 589999999999999999999999999996 699999999999997643 56899999999999
Q ss_pred cccccccCCCCC-----CCceeeeC--CCCCeEecCceEEEecCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEE
Q 001290 153 NESVRDLLSTDS-----TPLRLLDD--PEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLT 225 (1106)
Q Consensus 153 NE~V~DLLs~~s-----~~L~i~ed--~~~g~~V~gLtev~V~S~eE~l~LL~~G~~~R~~asT~~N~~SSRSHaIftI~ 225 (1106)
||+|+|||++.. ..+.++++ +.++++|.|++++.|.++++++.+|..|.++|++++|.||..|||||+||+|+
T Consensus 179 nE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~ 258 (376)
T 2rep_A 179 NETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQ 258 (376)
T ss_dssp TTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGGGSEEEEEEE
T ss_pred CCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEE
Confidence 999999998752 35778887 67899999999999999999999999999999999999999999999999999
Q ss_pred EEeecccccCCCCceeEEEeEEEEecCCCcccccccccc----ccccccccchhhHHHHHHHHHHhcCCCCCccCCCCCh
Q 001290 226 IESSAREYLGAGNSSILSASVNFVDLAGSERASQTLNAG----ARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSK 301 (1106)
Q Consensus 226 Ie~~~~e~~~~~~~~~~~SkL~fVDLAGSER~~kt~s~G----~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSK 301 (1106)
|.+.... ......|+|+|||||||||++++++.| .|++|+.+||+||++||+||.+|+.+ ..||||||||
T Consensus 259 v~~~~~~-----~~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~-~~hVPYRdSk 332 (376)
T 2rep_A 259 ISGEHSS-----RGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNK-ESHVPYRNSK 332 (376)
T ss_dssp EEEEESS-----SCCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHTT-CSCCCGGGSH
T ss_pred EEEEecC-----CCcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcC-CCccCCcCCH
Confidence 9876432 234578999999999999999999999 99999999999999999999999975 5799999999
Q ss_pred hhHhhhhccCCCceeeEEEecCCCCcchHHHHHHHHHHHHHhhc
Q 001290 302 LTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEV 345 (1106)
Q Consensus 302 LTrLLqdsLGGNSkT~mI~tISPs~~~~eETLsTLrFAsrAK~I 345 (1106)
||+||||+||||++|+|||||||+..+++||++||+||+|++++
T Consensus 333 LT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 333 LTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp HHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999863
No 23
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=2.6e-78 Score=682.33 Aligned_cols=320 Identities=33% Similarity=0.502 Sum_probs=257.0
Q ss_pred CCCCCCCCEEEEEEeCCCChhhhhcCCCcceEEe-cCceEEecCCCcc------CCCCCCceecceecCCCCChHHHHHH
Q 001290 16 LTAGQEERILVFVRLRPLNEKEYARNDVSDWECI-NNNSIVFKNSLLE------RSVYPPAYTFDRVFGCECPTRQVYEE 88 (1106)
Q Consensus 16 ~~~~~eerIrV~VRVRPl~~~E~~~~~~~~~~~i-~~~tIv~~~~~~~------~s~~~~~F~FD~VF~~~atQeeVYe~ 88 (1106)
.+.+..++|+|+|||||+...+ ...+.+. ++.++.+...... .......|.||+||+ +++|++||+.
T Consensus 17 ~~~~~~g~IrV~vRvRP~~~~~-----~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy~~ 90 (358)
T 2nr8_A 17 RGSGTRKKVHAFVRVKPTDDFA-----HEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYET 90 (358)
T ss_dssp ------CCEEEEEEECCCSSCC-----TTTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHH
T ss_pred CCCCCCCCeEEEEEcCCCCCCc-----cceeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHHHH
Confidence 3456688999999999986532 2334443 3445555432111 112245799999995 8999999999
Q ss_pred HHHHHHHHhhcCCCcceeeeccCCCCCccccC---------CChHhHHHHHHHhhhccccceEEEEeeEEEEeccccccc
Q 001290 89 AAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG---------GITEYAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDL 159 (1106)
Q Consensus 89 vv~plV~svL~G~NatIfAYGQTGSGKTyTM~---------GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DL 159 (1106)
+++|+|+++++|||+||||||||||||||||+ ||+||++++||+.+.......|.|++||+|||||+|+||
T Consensus 91 ~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DL 170 (358)
T 2nr8_A 91 VAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDL 170 (358)
T ss_dssp HTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEET
T ss_pred HHHHHHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhhcCCceEEEEEEEEEEeCCeeeEC
Confidence 99999999999999999999999999999994 899999999999999888889999999999999999999
Q ss_pred CCCC------CCCceeeeCCCCCeEecCceEEEecCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccc
Q 001290 160 LSTD------STPLRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREY 233 (1106)
Q Consensus 160 Ls~~------s~~L~i~ed~~~g~~V~gLtev~V~S~eE~l~LL~~G~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~ 233 (1106)
|++. ..++.+++++ .|++|.|++++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|++.....
T Consensus 171 L~~~~~~~~~~~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~ 249 (358)
T 2nr8_A 171 LSTLPYVGPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTL 249 (358)
T ss_dssp TSSSTTSCTTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC----
T ss_pred cCCccccCccCCceEEEECC-CceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEEeccC
Confidence 9863 3578999998 78999999999999999999999999999999999999999999999999998765431
Q ss_pred cCCCCceeEEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCCccCCCCChhhHhhhhccCCC
Q 001290 234 LGAGNSSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGN 313 (1106)
Q Consensus 234 ~~~~~~~~~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGN 313 (1106)
.......|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+.++..||||||||||+||||+||||
T Consensus 250 ---~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hiPyRdSkLT~LLqdsLgGn 326 (358)
T 2nr8_A 250 ---SEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGN 326 (358)
T ss_dssp ------CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSS
T ss_pred ---CCCCEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCC
Confidence 22345689999999999999999999999999999999999999999999998777899999999999999999999
Q ss_pred ceeeEEEecCCCCcchHHHHHHHHHHHHHhhc
Q 001290 314 ARTAIICTMSPARSHVEQSRNTLLFASCAKEV 345 (1106)
Q Consensus 314 SkT~mI~tISPs~~~~eETLsTLrFAsrAK~I 345 (1106)
|+|+|||||||+..+++||++||+||+|||.|
T Consensus 327 skt~mIa~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 327 CNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp SEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred CeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999986
No 24
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=1.6e-78 Score=681.91 Aligned_cols=319 Identities=33% Similarity=0.496 Sum_probs=261.4
Q ss_pred CCEEEEEEeCCCCh-hhhhcCCCcceEEe--c----CceEEecCCCccCCCCCCceecceecCCCCChHHHHHHHHHHHH
Q 001290 22 ERILVFVRLRPLNE-KEYARNDVSDWECI--N----NNSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVT 94 (1106)
Q Consensus 22 erIrV~VRVRPl~~-~E~~~~~~~~~~~i--~----~~tIv~~~~~~~~s~~~~~F~FD~VF~~~atQeeVYe~vv~plV 94 (1106)
++|+|+|||||++. .|. .+...+.+. + ..++.+.... .....+.|.||+||+++++|++||+.+ .|+|
T Consensus 3 ~nIrV~vRvRP~~~~~e~--~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v-~~lv 77 (347)
T 1f9v_A 3 GNIRVYCRIRPALKNLEN--SDTSLINVNEFDDNSGVQSMEVTKIQ--NTAQVHEFKFDKIFDQQDTNVDVFKEV-GQLV 77 (347)
T ss_dssp CEEEEEEEECCCCTTTCC--CTTEEEEECCCBTTTTBEEEEEEEGG--GTTCEEEEEESEEECTTCCHHHHHHHH-HHHH
T ss_pred CCeEEEEEeCCCCccccc--CCCceEEEecccCCCCceEEEEecCC--CCcCceEEeeCEEECCCCCHHHHHHHH-HHHH
Confidence 68999999999987 442 222222221 1 1234433221 112346899999999999999999985 6899
Q ss_pred HHhhcCCCcceeeeccCCCCCccccC----CChHhHHHHHHHhhhccc--cceEEEEeeEEEEecccccccCCCCCC---
Q 001290 95 LSVVNGINSTFFAYGQTSSGKTYTMG----GITEYAIQDIYDYIDTHQ--EREFVLKFSAMEIYNESVRDLLSTDST--- 165 (1106)
Q Consensus 95 ~svL~G~NatIfAYGQTGSGKTyTM~----GIi~rai~dLF~~I~~~~--~~~f~V~vS~lEIYNE~V~DLLs~~s~--- 165 (1106)
+++++|||+||||||||||||||||+ ||+||++++||+.+.... ...|.|++||+|||||+|+|||++...
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyTM~G~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~ 157 (347)
T 1f9v_A 78 QSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKE 157 (347)
T ss_dssp GGGGGTCCEEEEEECCTTSSHHHHHHSTTTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC-------
T ss_pred HHhcCCceeEEEEECCCCCCCcEeccCCCCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCcccccc
Confidence 99999999999999999999999995 899999999999997643 468999999999999999999987643
Q ss_pred ------CceeeeC-CCCCeEecCceEEEecCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCC
Q 001290 166 ------PLRLLDD-PEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGN 238 (1106)
Q Consensus 166 ------~L~i~ed-~~~g~~V~gLtev~V~S~eE~l~LL~~G~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~ 238 (1106)
.+.++++ ..++++|.|++++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|.+.... .
T Consensus 158 ~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-----~ 232 (347)
T 1f9v_A 158 DTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAK-----T 232 (347)
T ss_dssp ------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC-------
T ss_pred ccccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCC-----C
Confidence 4667765 457899999999999999999999999999999999999999999999999999876432 2
Q ss_pred ceeEEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCC--CCccCCCCChhhHhhhhccCCCcee
Q 001290 239 SSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGR--NAHIPYRDSKLTRILQNSLGGNART 316 (1106)
Q Consensus 239 ~~~~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk--~~hIPYRDSKLTrLLqdsLGGNSkT 316 (1106)
.....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.+. ..||||||||||+||||+||||++|
T Consensus 233 ~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt 312 (347)
T 1f9v_A 233 GAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKT 312 (347)
T ss_dssp CCEEEEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEE
T ss_pred CceeeeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCCccE
Confidence 23578999999999999999999999999999999999999999999998764 4799999999999999999999999
Q ss_pred eEEEecCCCCcchHHHHHHHHHHHHHhhcccccc
Q 001290 317 AIICTMSPARSHVEQSRNTLLFASCAKEVATNAQ 350 (1106)
Q Consensus 317 ~mI~tISPs~~~~eETLsTLrFAsrAK~Ikn~p~ 350 (1106)
+|||||||+..+++||++||+||+||+.|+..++
T Consensus 313 ~mI~~vsP~~~~~~ETl~TLrfA~r~~~i~~~~r 346 (347)
T 1f9v_A 313 LMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 346 (347)
T ss_dssp EEEEEECCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred EEEEEeCCccccHHHHHHHHHHHHHHhhhccCCC
Confidence 9999999999999999999999999999988764
No 25
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=1.5e-76 Score=678.42 Aligned_cols=321 Identities=35% Similarity=0.532 Sum_probs=266.4
Q ss_pred CCCEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCCc--cCCCCCCceecceecCCCCChHHHHHHHHHHHHHHhh
Q 001290 21 EERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLL--ERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSVV 98 (1106)
Q Consensus 21 eerIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~~--~~s~~~~~F~FD~VF~~~atQeeVYe~vv~plV~svL 98 (1106)
.++|+|+|||||++..|...+ .+.|...++.++.+..... ......+.|.||+||+++++|++||+.+ .|+|++++
T Consensus 58 ~gnIrV~vRvRP~~~~E~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~v-~plv~~~l 135 (412)
T 3u06_A 58 RDNIRVFCRIRPPLESEENRM-CCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMV-SPLIQSAL 135 (412)
T ss_dssp TCSEEEEEEECCCCGGGTTSC-BCEEEEEETTEEEEECCC-------CCCEEECSEEECTTCCHHHHHTTT-HHHHHHHH
T ss_pred CCCEEEEEEcCCCCchhccCc-ceEEEecCCCEEEEecCCcccccccCceEEeeCeEcCCCCCHHHHHHHH-HHHHHHHH
Confidence 468999999999999886543 4566777788777654322 1122357899999999999999999865 69999999
Q ss_pred cCCCcceeeeccCCCCCccccC------CChHhHHHHHHHhhhccc--cceEEEEeeEEEEecccccccCCCCCCC--ce
Q 001290 99 NGINSTFFAYGQTSSGKTYTMG------GITEYAIQDIYDYIDTHQ--EREFVLKFSAMEIYNESVRDLLSTDSTP--LR 168 (1106)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~------GIi~rai~dLF~~I~~~~--~~~f~V~vS~lEIYNE~V~DLLs~~s~~--L~ 168 (1106)
+|||+||||||||||||||||+ ||+|+++++||+.+.... ...|.|++||+|||||+|+|||++...+ ++
T Consensus 136 ~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~i~ 215 (412)
T 3u06_A 136 DGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIR 215 (412)
T ss_dssp TTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTCCSCCCCCEE
T ss_pred CCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeEEcCCCCCCCceee
Confidence 9999999999999999999996 899999999999997643 5789999999999999999999887665 44
Q ss_pred eeeCCCCCeEecCceEEEecCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEEE
Q 001290 169 LLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNF 248 (1106)
Q Consensus 169 i~ed~~~g~~V~gLtev~V~S~eE~l~LL~~G~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~f 248 (1106)
+.+++.++++|.|++++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|.+.... ......|+|+|
T Consensus 216 ~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-----~~~~~~~kL~l 290 (412)
T 3u06_A 216 MAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAE-----KQEISVGSINL 290 (412)
T ss_dssp ECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEETT-----TTEEEEEEEEE
T ss_pred eeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeCC-----CCCEEEEEEEE
Confidence 5578889999999999999999999999999999999999999999999999999999876432 33467899999
Q ss_pred EecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCCccCCCCChhhHhhhhccCCCceeeEEEecCCCCcc
Q 001290 249 VDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSH 328 (1106)
Q Consensus 249 VDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~ 328 (1106)
||||||||.. .|.|++|+.+||+||++||+||.+|+.+ ..||||||||||+||||+|||||+|+|||||||+..+
T Consensus 291 VDLAGSEr~~----~~~rl~E~~~INkSL~aLg~vI~aL~~~-~~hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP~~~~ 365 (412)
T 3u06_A 291 VDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQK-QDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDC 365 (412)
T ss_dssp EECCCCCC--------------CTTTHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHHGGGTSTTCEEEEEEEECCBGGG
T ss_pred EECCCCCcCC----ccchhHhHHHHhHHHHHHHHHHHHHhcc-CCCCCccccHHHHHHHHhcCCCceEEEEEEeCCChhh
Confidence 9999999974 4689999999999999999999999974 6799999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcccc-ccccc
Q 001290 329 VEQSRNTLLFASCAKEVATN-AQVNV 353 (1106)
Q Consensus 329 ~eETLsTLrFAsrAK~Ikn~-p~vN~ 353 (1106)
++||++||+||+|++.|+.. ++.|.
T Consensus 366 ~~ETl~TLrfA~rv~~i~~~~~~~n~ 391 (412)
T 3u06_A 366 FQESVKSLRFAASVNSCKMTKAKRNR 391 (412)
T ss_dssp HHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHHhhcccccccccc
Confidence 99999999999999999854 44443
No 26
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=1.3e-76 Score=665.31 Aligned_cols=307 Identities=30% Similarity=0.449 Sum_probs=242.3
Q ss_pred CCCCCCCCEEEEEEeCCCChhhhhcCCCcceEEec---CceEEecCCCccCCCCCCceecceecCCCCChHHHHHHHHHH
Q 001290 16 LTAGQEERILVFVRLRPLNEKEYARNDVSDWECIN---NNSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKE 92 (1106)
Q Consensus 16 ~~~~~eerIrV~VRVRPl~~~E~~~~~~~~~~~i~---~~tIv~~~~~~~~s~~~~~F~FD~VF~~~atQeeVYe~vv~p 92 (1106)
|..+..++|+|+|||||++..|. .++...+.+.. +..+.+. .+.|.||+||+++++|++||+.++.|
T Consensus 16 m~~~~~~~VrV~vRvRP~~~~e~-~~~~~~v~~~~~~~~~~~~~~---------~~~F~FD~Vf~~~~sQ~~Vy~~~~~p 85 (344)
T 3dc4_A 16 MEGAKLSAVRIAVREAPYRQFLG-RREPSVVQFPPWSDGKSLIVD---------QNEFHFDHAFPATISQDEMYQALILP 85 (344)
T ss_dssp ---CCCSEEEEEEEECCCC--------CCSEECCSSSCSSEEEET---------TEEEECSEEECTTCCHHHHHHHHTHH
T ss_pred CCCCCCCCeEEEEECCCCCcccc-cCCceEEEecCCCCCceEEec---------CcEEEcceEECCCCCHHHHHHhhccc
Confidence 44466889999999999998773 34444554432 3344432 35899999999999999999999999
Q ss_pred HHHHhhcCCCcceeeeccCCCCCccccC------------CChHhHHHHHHHhhhcccc---ceEEEEeeEEEEeccccc
Q 001290 93 VTLSVVNGINSTFFAYGQTSSGKTYTMG------------GITEYAIQDIYDYIDTHQE---REFVLKFSAMEIYNESVR 157 (1106)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM~------------GIi~rai~dLF~~I~~~~~---~~f~V~vS~lEIYNE~V~ 157 (1106)
+|+++++|||+||||||||||||||||. ||+||++++||+.+..... ..|.|++||+|||||+|+
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~ 165 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPF 165 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEE
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCeeE
Confidence 9999999999999999999999999994 8999999999999976543 469999999999999999
Q ss_pred ccCCCCCCCceeeeCCCCCeEecCceEEEecCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCC
Q 001290 158 DLLSTDSTPLRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAG 237 (1106)
Q Consensus 158 DLLs~~s~~L~i~ed~~~g~~V~gLtev~V~S~eE~l~LL~~G~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~ 237 (1106)
|||++...... .+..+.+++++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|.+.
T Consensus 166 DLL~~~~~~~~------~~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~-------- 231 (344)
T 3dc4_A 166 DLLGSTPHMPM------VAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK-------- 231 (344)
T ss_dssp ETTSSCTTSBC------CSSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS--------
T ss_pred EccCCCCCCcc------ccccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec--------
Confidence 99987654211 1233568999999999999999999999999999999999999999999999652
Q ss_pred CceeEEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCCccCCCCChhhHhhhhccCCCceee
Q 001290 238 NSSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTA 317 (1106)
Q Consensus 238 ~~~~~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~ 317 (1106)
...|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+.+ ..||||||||||+||||+||||++|+
T Consensus 232 ---~~~skl~lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~-~~hiPyRdSkLT~lLqdsLgGnskt~ 307 (344)
T 3dc4_A 232 ---THHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAG-HTVIPYRDSVLTTVLQASLTAQSYLT 307 (344)
T ss_dssp ---SCEEEEEEEECCCCCCC-------------CCSCCHHHHHHHHHHHHHTT-CSSCCGGGSHHHHHTTTTSSTTCEEE
T ss_pred ---CcEEEEEEEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhcc-CCcCCccccHHHHHHHHHhCCCCEEE
Confidence 14689999999999999999999999999999999999999999999986 56999999999999999999999999
Q ss_pred EEEecCCCCcchHHHHHHHHHHHHHhhcccccc
Q 001290 318 IICTMSPARSHVEQSRNTLLFASCAKEVATNAQ 350 (1106)
Q Consensus 318 mI~tISPs~~~~eETLsTLrFAsrAK~Ikn~p~ 350 (1106)
|||||||+..+++||++||+||+||++....|.
T Consensus 308 mIa~isP~~~~~~ETlsTL~fA~ra~~~~~~~~ 340 (344)
T 3dc4_A 308 FLACISPHQCDLSETLSTLRFGTSAKAAALEHH 340 (344)
T ss_dssp EEEEECCCGGGHHHHHHHHHHHHHHHHHTTTC-
T ss_pred EEEEeCCchhhHHHHHHHHHHHHHHhhcCCCCC
Confidence 999999999999999999999999999876654
No 27
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-76 Score=678.20 Aligned_cols=321 Identities=33% Similarity=0.504 Sum_probs=264.5
Q ss_pred CCCEEEEEEeCCCChhhhhcCCCcceEEe--cC----ceEEecCCCccCCCCCCceecceecCCCCChHHHHHHHHHHHH
Q 001290 21 EERILVFVRLRPLNEKEYARNDVSDWECI--NN----NSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVT 94 (1106)
Q Consensus 21 eerIrV~VRVRPl~~~E~~~~~~~~~~~i--~~----~tIv~~~~~~~~s~~~~~F~FD~VF~~~atQeeVYe~vv~plV 94 (1106)
.++|+|||||||+...+.. .+...+.+. ++ .++.+... ......+.|.||+||+++++|++||+.+ .|+|
T Consensus 58 kgnIrV~vRvRP~~~~~e~-~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~F~FD~VF~~~~~Q~~Vf~~v-~~lv 133 (403)
T 4etp_A 58 RGNIRVYLRIRPALKNLEN-SDTSLINVNEFDDNSGVQSMEVTKI--QNTAQVHEFKFDKIFDQQDTNVDVFKEV-GQLV 133 (403)
T ss_dssp HCSEEEEEEECCCCTTTSC-SCCTTEEECCCBTTTTBEEEEEEEC--SSSCEEEEEEESEEECTTCCHHHHHHHH-HHHH
T ss_pred CCCeEEEEEeCCCCCcccc-cCCCeeEEeeccCCCCceEEEEecC--CCCcCceEEEcCEEECCCCchHHHHHHH-HHHH
Confidence 3689999999999876322 122222221 11 12322211 1112246899999999999999999985 5899
Q ss_pred HHhhcCCCcceeeeccCCCCCccccC----CChHhHHHHHHHhhhcc--ccceEEEEeeEEEEecccccccCCCCC----
Q 001290 95 LSVVNGINSTFFAYGQTSSGKTYTMG----GITEYAIQDIYDYIDTH--QEREFVLKFSAMEIYNESVRDLLSTDS---- 164 (1106)
Q Consensus 95 ~svL~G~NatIfAYGQTGSGKTyTM~----GIi~rai~dLF~~I~~~--~~~~f~V~vS~lEIYNE~V~DLLs~~s---- 164 (1106)
+++++|||+||||||||||||||||+ ||+|+++++||..+... ....|.|++||+|||||+|+|||++..
T Consensus 134 ~~~l~G~N~tifAYGqTGSGKTyTM~g~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~ 213 (403)
T 4etp_A 134 QSSLDGYNVAIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKE 213 (403)
T ss_dssp HHHHTTCCEEEEEESCTTSSHHHHHHCTTTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTEEEETTCC------
T ss_pred HHHhCCcceEEEEECCCCCCCceEeCCCCCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecceeeEccCCcccccc
Confidence 99999999999999999999999994 89999999999999764 356899999999999999999998754
Q ss_pred -----CCceeeeCC-CCCeEecCceEEEecCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCC
Q 001290 165 -----TPLRLLDDP-EKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGN 238 (1106)
Q Consensus 165 -----~~L~i~ed~-~~g~~V~gLtev~V~S~eE~l~LL~~G~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~ 238 (1106)
..+.+++++ .++++|.|++++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|.+.... .
T Consensus 214 ~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-----~ 288 (403)
T 4etp_A 214 DTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAK-----T 288 (403)
T ss_dssp --CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEEEEEETT-----T
T ss_pred ccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEEEEeecC-----C
Confidence 245666665 46799999999999999999999999999999999999999999999999999876432 2
Q ss_pred ceeEEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCC--CCccCCCCChhhHhhhhccCCCcee
Q 001290 239 SSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGR--NAHIPYRDSKLTRILQNSLGGNART 316 (1106)
Q Consensus 239 ~~~~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk--~~hIPYRDSKLTrLLqdsLGGNSkT 316 (1106)
.....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.+. ..||||||||||+||||+|||||+|
T Consensus 289 ~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLgGnskt 368 (403)
T 4etp_A 289 GAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKT 368 (403)
T ss_dssp CCEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTSTTCEE
T ss_pred CCeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccchHHHHHHHhcCCCceE
Confidence 33568999999999999999999999999999999999999999999998753 3599999999999999999999999
Q ss_pred eEEEecCCCCcchHHHHHHHHHHHHHhhcccccc
Q 001290 317 AIICTMSPARSHVEQSRNTLLFASCAKEVATNAQ 350 (1106)
Q Consensus 317 ~mI~tISPs~~~~eETLsTLrFAsrAK~Ikn~p~ 350 (1106)
+|||||||+..+++||++||+||+|++.|+..++
T Consensus 369 ~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~r 402 (403)
T 4etp_A 369 LMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 402 (403)
T ss_dssp EEEEEECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence 9999999999999999999999999999988764
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=6.6e-73 Score=687.73 Aligned_cols=320 Identities=30% Similarity=0.505 Sum_probs=250.4
Q ss_pred CCCCEEEEEEeC----CCChhhhhcC-CCcceEEe------cCceEEecCCCccCCCCCCceecceecCCCCChHHHHHH
Q 001290 20 QEERILVFVRLR----PLNEKEYARN-DVSDWECI------NNNSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEE 88 (1106)
Q Consensus 20 ~eerIrV~VRVR----Pl~~~E~~~~-~~~~~~~i------~~~tIv~~~~~~~~s~~~~~F~FD~VF~~~atQeeVYe~ 88 (1106)
--++++|||||| |....|...+ +...++.. ..+.|++..+. ......+.|+||+||+++++|++||+.
T Consensus 372 il~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~fd~vf~~~~~q~~v~~~ 450 (715)
T 4h1g_A 372 LKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNI-NNNFSNLRFLFDKIFEREQSNDLVFEE 450 (715)
T ss_dssp SSCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEE-TTEEEEEEEECSEEECSSCCHHHHGGG
T ss_pred HHhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCC-CCCCCCeEEEeceEeCCCCCHHHHHHH
Confidence 356899999999 4444343322 22222222 23445554332 222335789999999999999999997
Q ss_pred HHHHHHHHhhcCCCcceeeeccCCCCCccccC----CChHhHHHHHHHhhhccc--cceEEEEeeEEEEecccccccCCC
Q 001290 89 AAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG----GITEYAIQDIYDYIDTHQ--EREFVLKFSAMEIYNESVRDLLST 162 (1106)
Q Consensus 89 vv~plV~svL~G~NatIfAYGQTGSGKTyTM~----GIi~rai~dLF~~I~~~~--~~~f~V~vS~lEIYNE~V~DLLs~ 162 (1106)
+ .|+|+++++|||+||||||||||||||||. ||+||++++||+.|.... ...|.|++||+|||||+|+|||++
T Consensus 451 ~-~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyne~i~DLl~~ 529 (715)
T 4h1g_A 451 L-SQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHPTNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNP 529 (715)
T ss_dssp T-HHHHHHHHTTCCEEEEEESSTTSSHHHHHHCTTTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEESSSC
T ss_pred H-HHHHHHHhCCceEEEEccCCCCCchhhccCCCCCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEECCEEEECCCC
Confidence 6 589999999999999999999999999996 799999999999997643 468999999999999999999987
Q ss_pred CC---CCceeeeCCC-CCeEecCceEEEecCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCC
Q 001290 163 DS---TPLRLLDDPE-KGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGN 238 (1106)
Q Consensus 163 ~s---~~L~i~ed~~-~g~~V~gLtev~V~S~eE~l~LL~~G~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~ 238 (1106)
.. ..+.++++.. ++++|.||+++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|++.... .
T Consensus 530 ~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~~~~-----~ 604 (715)
T 4h1g_A 530 KIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSL-----T 604 (715)
T ss_dssp CCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEEEEEEETT-----T
T ss_pred CCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEEEEEEecC-----C
Confidence 53 3566666554 4599999999999999999999999999999999999999999999999999876432 3
Q ss_pred ceeEEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCCccCCCCChhhHhhhhccCCCceeeE
Q 001290 239 SSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAI 318 (1106)
Q Consensus 239 ~~~~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~m 318 (1106)
.....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.++..|||||||||||||||+|||||+|+|
T Consensus 605 ~~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~slggn~~t~~ 684 (715)
T 4h1g_A 605 KESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLM 684 (715)
T ss_dssp CCEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGTSTTCEEEE
T ss_pred CCEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhcCCCceEEE
Confidence 34578999999999999999999999999999999999999999999998766789999999999999999999999999
Q ss_pred EEecCCCCcchHHHHHHHHHHHHHhhcc
Q 001290 319 ICTMSPARSHVEQSRNTLLFASCAKEVA 346 (1106)
Q Consensus 319 I~tISPs~~~~eETLsTLrFAsrAK~Ik 346 (1106)
||||||+..+++||++||+||+|||+|+
T Consensus 685 i~~isp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 685 FVNISPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp EEEECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred EEEECCChhhHHHHHHHHHHHHHhccce
Confidence 9999999999999999999999999986
No 29
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.95 E-value=2.3e-29 Score=236.93 Aligned_cols=99 Identities=41% Similarity=0.668 Sum_probs=95.0
Q ss_pred cccchhhHHHHHHHHHHhcCCCCCccCCCCChhhHhhhhccCCCceeeEEEecCCCCcchHHHHHHHHHHHHHhhccccc
Q 001290 270 GSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVATNA 349 (1106)
Q Consensus 270 g~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~~eETLsTLrFAsrAK~Ikn~p 349 (1106)
+.+||+||++||+||.+|+.++..||||||||||+||||+||||++|+|||||||+..+++||++||+||+||+.|+++|
T Consensus 1 a~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~ 80 (100)
T 2kin_B 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTV 80 (100)
T ss_dssp CCBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcc
Confidence 46899999999999999998767899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCHHHHHHHHHHHH
Q 001290 350 QVNVVMSDKALVKQLQKEL 368 (1106)
Q Consensus 350 ~vN~~~sd~alik~Lq~Ei 368 (1106)
.+|+..++.+++++|++|+
T Consensus 81 ~~n~~~~~~~l~~~~~~e~ 99 (100)
T 2kin_B 81 SVNLELTAEEWKKKYEKEK 99 (100)
T ss_dssp CCEEECCHHHHHHHHHHHH
T ss_pred eeccCCCHHHHHHHHHHhh
Confidence 9999999999999998876
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.94 E-value=2.6e-27 Score=228.98 Aligned_cols=98 Identities=42% Similarity=0.676 Sum_probs=91.5
Q ss_pred hhhHHHHHHHHHHhcCCCCCccCCCCChhhHhhhhccCCCceeeEEEecCCCCcchHHHHHHHHHHHHHhhccccccccc
Q 001290 274 NRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVATNAQVNV 353 (1106)
Q Consensus 274 NkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~~eETLsTLrFAsrAK~Ikn~p~vN~ 353 (1106)
|+||++||+||.+|+.++..||||||||||+||||+|||||+|+|||||||+..+++||++||+||+|||.|+|+|.+|.
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~ 80 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL 80 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence 89999999999999988778999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHH
Q 001290 354 VMSDKALVKQLQKELARL 371 (1106)
Q Consensus 354 ~~sd~alik~Lq~Ei~rL 371 (1106)
..++.+++++++++++++
T Consensus 81 ~~~~~~l~~~~~~e~~~~ 98 (117)
T 3kin_B 81 ELTAEEWKKKYEKEKEKN 98 (117)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 999888877766655544
No 31
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.86 E-value=8.2e-23 Score=221.63 Aligned_cols=262 Identities=13% Similarity=0.142 Sum_probs=172.7
Q ss_pred CCEEEEEEeCCCC-hhhhhcCCCcceEEecCceEEecCCCccCCCCCCceecceecCCCCChH--HHHHHHHHHHHHHhh
Q 001290 22 ERILVFVRLRPLN-EKEYARNDVSDWECINNNSIVFKNSLLERSVYPPAYTFDRVFGCECPTR--QVYEEAAKEVTLSVV 98 (1106)
Q Consensus 22 erIrV~VRVRPl~-~~E~~~~~~~~~~~i~~~tIv~~~~~~~~s~~~~~F~FD~VF~~~atQe--eVYe~vv~plV~svL 98 (1106)
|+|||||||||.. +. ...+...+ ..|.+. . ..+.|.||+||++.+.|+ +||++ +.+++++++
T Consensus 24 GnIRVFcrvrp~~~p~------~~~v~y~~-~~I~v~-~------~~k~f~FDRVf~p~s~Qe~~~vf~E-~~~~i~scL 88 (298)
T 2o0a_A 24 GTMRCYAYVMEQNLPE------NLLFDYEN-GVITQG-L------SEHVYKFNRVIPHLKVSEDKFFTQE-YSVYHDMCL 88 (298)
T ss_dssp TCCEEEEEECGGGSCT------TEEEETTT-TEEEET-T------TCCEEECSEEEETTTSCHHHHHHHT-THHHHHHHH
T ss_pred CceEEEEEeccccCCc------cceeecCc-cceeec-C------CCceEEeeeEECccccccHHHHHHH-HHHHHHHHH
Confidence 7899999999964 21 11122222 335442 2 126899999999999999 99999 599999999
Q ss_pred c-CCCcceeeeccCCCCCccccCCChHhHHHHHHHhhhc-cccceEEEEeeEEEEe-cccccccCCCCC--CCceeeeCC
Q 001290 99 N-GINSTFFAYGQTSSGKTYTMGGITEYAIQDIYDYIDT-HQEREFVLKFSAMEIY-NESVRDLLSTDS--TPLRLLDDP 173 (1106)
Q Consensus 99 ~-G~NatIfAYGQTGSGKTyTM~GIi~rai~dLF~~I~~-~~~~~f~V~vS~lEIY-NE~V~DLLs~~s--~~L~i~ed~ 173 (1106)
+ |||+||||||||||||| |+++..+|...+. .. ..|.+.+||+||| ||.++|||.... ..+.|+-+.
T Consensus 89 d~GyNvcIfSyGQTGsGKT-------~ral~q~f~~~~~~~~-~~Y~~tlq~veLy~Ne~~~DLL~~~~~~~k~eIk~~~ 160 (298)
T 2o0a_A 89 NQKKNFNLISLSTTPHGSL-------RESLIKFLAEKDTIYQ-KQYVITLQFVFLSDDEFSQDMLLDYSHNDKDSIKLKF 160 (298)
T ss_dssp HTTCCEEEEEECSSCCHHH-------HHHHHHHHHSTTSHHH-HHEEEEEEEEEEECC-CEEETTSCCC------CEEEE
T ss_pred hCCCceEEEEECCCCCCcc-------HHHHHHHHHHhhhhcc-cceEEEEEEEEEecCCchHHhcCCCCCCCcceEEecC
Confidence 9 99999999999999999 9999999987644 33 7899999999999 999999996332 356777778
Q ss_pred CCCeEecCceEEEecC-HHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEEEEecC
Q 001290 174 EKGTVVERLTEETLTD-MSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNFVDLA 252 (1106)
Q Consensus 174 ~~g~~V~gLtev~V~S-~eE~l~LL~~G~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~fVDLA 252 (1106)
.++.+|.|++.+.|.+ .+|+..++..+.. +.+|. +.-.|+.+.+...+....+ +.....-.++|+.+.
T Consensus 161 ~g~~iv~~s~~i~V~~~~edv~~~~~~~~~------~~~~~---~gi~i~k~~~~~~~~~~~~--~~~~~~~d~yf~e~~ 229 (298)
T 2o0a_A 161 EKHSISLDSKLVIIENGLEDLPLNFSCDEH------PNLPH---SGMGIIKVQFFPRDSKSDG--NNDPVPVDFYFIELN 229 (298)
T ss_dssp CSSCEEEESCCEEESSGGGGSCTTTTCC----------------CEEEEEEEEEEESCC---------CCCEEEEEEEEC
T ss_pred CCCEEecccEEEEccccHHHHHHHhhcccc------cccCC---CCceEEEEEEecCcccccc--cCCCCceEEEEEEeC
Confidence 8999999999999999 8988887722211 12222 3355666666553221111 111112345676653
Q ss_pred CCccccccccccccccccccchhhHHHHHHHHHHhcCCCCCccCCCCChhhHhhhhccCCCceeeEEEecCCCCcchHHH
Q 001290 253 GSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHVEQS 332 (1106)
Q Consensus 253 GSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~~eET 332 (1106)
-.. +...|.+. +..+ -+-.|+++-+|+.-|- ..+.++++++.-.. +.
T Consensus 230 ~~~--------------------~~~~l~~~---~~~~-----~~~~spi~~il~~ll~-~tks~~~~~l~~~~----~~ 276 (298)
T 2o0a_A 230 NLK--------------------SIEQFDKS---IFKK-----ESCETPIALVLKKLIS-DTKSFFLLNLNDSK----NV 276 (298)
T ss_dssp SHH--------------------HHHHHHHH---HHTC------CCCSHHHHHHHHHHH-HSBCEEEEEECCGG----GH
T ss_pred CHH--------------------HHHHHHhh---cccc-----cccCCcHHHHHHHHHh-cCcceEEEEecCCC----ch
Confidence 221 13334432 2232 2456788888887763 46788999997543 22
Q ss_pred HHHHHHHHHHhhcccccc
Q 001290 333 RNTLLFASCAKEVATNAQ 350 (1106)
Q Consensus 333 LsTLrFAsrAK~Ikn~p~ 350 (1106)
-.-|..+++...+.|...
T Consensus 277 ~~lL~~s~~i~~~~~~~~ 294 (298)
T 2o0a_A 277 NKLLTISEEVQTQLCKRK 294 (298)
T ss_dssp HHHHHHHHHHHHHTC---
T ss_pred hHHHHHHHHhhcccCccc
Confidence 347788888877776543
No 32
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=91.19 E-value=0.052 Score=53.99 Aligned_cols=52 Identities=10% Similarity=-0.038 Sum_probs=36.4
Q ss_pred CceecceecCCCCChHHHHHHHHHHHHHHhhcCCCcceeeeccCCCCCccccC
Q 001290 68 PAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 68 ~~F~FD~VF~~~atQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1106)
..++||.....+..|+.+++.+ ..++.++--.....++-||++|+|||+.+.
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTI-RVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHH-HHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred hhCccccccCCCHHHHHHHHHH-HHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 3568888776555677777654 556655433334567889999999999874
No 33
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=89.45 E-value=0.11 Score=52.35 Aligned_cols=51 Identities=16% Similarity=0.111 Sum_probs=34.0
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhhcCC-CcceeeeccCCCCCccccC
Q 001290 69 AYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGI-NSTFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 69 ~F~FD~VF~~~atQeeVYe~vv~plV~svL~G~-NatIfAYGQTGSGKTyTM~ 120 (1106)
.++||.+...+..+..+++.+ ..++...-.+. +..|+-||++|+|||+.+.
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFA-ERFVAEYEPGKKMKGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHH-HHHHHHCCSSCCCCEEEEECSTTSSHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHHH-HHHHHHhhhccCCCeEEEECCCCCCHHHHHH
Confidence 467887766555566677643 44444433332 2678999999999999864
No 34
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=88.44 E-value=0.11 Score=57.08 Aligned_cols=53 Identities=11% Similarity=0.258 Sum_probs=34.9
Q ss_pred eecceecCCCCChHHHHHHHHHHHHHHhhcCCCcceeeeccCCCCCccccCCCh
Q 001290 70 YTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGIT 123 (1106)
Q Consensus 70 F~FD~VF~~~atQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi 123 (1106)
++||.+......+..++. .+..++...-.+....|+-||++|+||||.+.++.
T Consensus 121 ~tfd~f~~~~~~~~~~~~-~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia 173 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMA 173 (308)
T ss_dssp CCGGGSCCCSHHHHHHHH-HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHH
T ss_pred CCHhhCcCCChHHHHHHH-HHHHHHHhccccCCceEEEECCCCCCHHHHHHHHH
Confidence 677776544434555666 34555555434445678899999999999986543
No 35
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=83.28 E-value=0.33 Score=51.18 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=22.0
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhhcCCCcceeeeccCCCCCcccc
Q 001290 69 AYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 69 ~F~FD~VF~~~atQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1106)
.|+||.+.+.+..-..+.+. +..+. ..+..|+-||.+|+|||+.+
T Consensus 2 ~~~f~~~ig~~~~~~~~~~~-----~~~~~-~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGEANSFLEVLEQ-----VSHLA-PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CCCHHHHHHHHH-----HHHHT-TSCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeCCHHHHHHHHH-----HHHHh-CCCCCEEEECCCCCcHHHHH
Confidence 47899988744333333322 22222 23467889999999999865
No 36
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=83.14 E-value=0.63 Score=48.92 Aligned_cols=52 Identities=21% Similarity=0.248 Sum_probs=33.9
Q ss_pred CceecceecCCCCChHHHHHHHHHHHH-----HHhhcCCCcceeeeccCCCCCccccC
Q 001290 68 PAYTFDRVFGCECPTRQVYEEAAKEVT-----LSVVNGINSTFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 68 ~~F~FD~VF~~~atQeeVYe~vv~plV-----~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1106)
..+.|+.+.+.+...+.+.+.+ ..+. ..+-......|+-||++|+|||+.+.
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIV-DFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHH-HHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHH-HHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHH
Confidence 4678999999877766665533 2211 11111234458999999999998763
No 37
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=79.99 E-value=0.65 Score=50.43 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=30.9
Q ss_pred cceecCCCCChHHHHHHHHHHHHHHhhc--CCC--cceeeeccCCCCCcccc
Q 001290 72 FDRVFGCECPTRQVYEEAAKEVTLSVVN--GIN--STFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 72 FD~VF~~~atQeeVYe~vv~plV~svL~--G~N--atIfAYGQTGSGKTyTM 119 (1106)
||.+|+..---..+.+.++..++...+. |.. ..|+-||++|+|||+..
T Consensus 2 ~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 2 LDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred cccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4444443333456667777777776654 222 36788999999999865
No 38
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=79.61 E-value=0.74 Score=44.36 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=22.7
Q ss_pred HHHHHHhhcCCCcceeeeccCCCCCccccCC
Q 001290 91 KEVTLSVVNGINSTFFAYGQTSSGKTYTMGG 121 (1106)
Q Consensus 91 ~plV~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1106)
..++..+..+....++-||++|+|||+.+..
T Consensus 32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~ 62 (195)
T 1jbk_A 32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIVEG 62 (195)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSCHHHHHHH
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHHHH
Confidence 3344444556667789999999999998743
No 39
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=78.65 E-value=0.74 Score=49.97 Aligned_cols=44 Identities=18% Similarity=0.421 Sum_probs=29.6
Q ss_pred CceecceecCCCCChHHHHHHHHHHHHHHhhcCCCcceeeeccCCCCCcccc
Q 001290 68 PAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 68 ~~F~FD~VF~~~atQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1106)
..|+|+.+++. ..+... +...++.+....|+-||++|+|||+.+
T Consensus 19 ~~~~f~~i~G~----~~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 19 PVFPFSAIVGQ----EDMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCGGGSCSC----HHHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCchhccCh----HHHHHH----HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 46889998874 333332 223344444556999999999999875
No 40
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=78.56 E-value=1.1 Score=48.79 Aligned_cols=52 Identities=27% Similarity=0.447 Sum_probs=31.8
Q ss_pred CCceecceecCCCCChHHHHHHHHHHHHHHhhcCCCcceeeeccCCCCCccccCC
Q 001290 67 PPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGG 121 (1106)
Q Consensus 67 ~~~F~FD~VF~~~atQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1106)
...|+||.+... ..+...+.. +..++..- .+....++-||++|+|||+.+..
T Consensus 5 ~~~~~f~~fv~g-~~~~~a~~~-~~~~~~~~-~~~~~~lll~G~~GtGKT~la~~ 56 (324)
T 1l8q_A 5 NPKYTLENFIVG-EGNRLAYEV-VKEALENL-GSLYNPIFIYGSVGTGKTHLLQA 56 (324)
T ss_dssp CTTCCSSSCCCC-TTTHHHHHH-HHHHHHTT-TTSCSSEEEECSSSSSHHHHHHH
T ss_pred CCCCCcccCCCC-CcHHHHHHH-HHHHHhCc-CCCCCeEEEECCCCCcHHHHHHH
Confidence 347899987632 234444543 33344321 11345788999999999998743
No 41
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=76.20 E-value=0.77 Score=48.60 Aligned_cols=52 Identities=19% Similarity=0.262 Sum_probs=32.5
Q ss_pred CceecceecCCCCChHHHHHHHHHHHHH-----HhhcCCCcceeeeccCCCCCcccc
Q 001290 68 PAYTFDRVFGCECPTRQVYEEAAKEVTL-----SVVNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 68 ~~F~FD~VF~~~atQeeVYe~vv~plV~-----svL~G~NatIfAYGQTGSGKTyTM 119 (1106)
..++|+.+.+.+..-+.+.+.+..++.. ..--.....|+-||++|+|||+.+
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3688999988655444454444333221 111134456899999999999875
No 42
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=76.04 E-value=0.87 Score=44.03 Aligned_cols=30 Identities=13% Similarity=0.160 Sum_probs=22.1
Q ss_pred HHHHHHhhcCCCcceeeeccCCCCCccccC
Q 001290 91 KEVTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 91 ~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1106)
..++..+..+....|+-||++|+|||+.+.
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHHH
Confidence 334444455667778999999999998764
No 43
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.90 E-value=1.4 Score=51.29 Aligned_cols=71 Identities=20% Similarity=0.302 Sum_probs=50.3
Q ss_pred CceecceecCCCCChHHHHHHHHHHHHH-Hhhc--CC--CcceeeeccCCCCCccccC----------------------
Q 001290 68 PAYTFDRVFGCECPTRQVYEEAAKEVTL-SVVN--GI--NSTFFAYGQTSSGKTYTMG---------------------- 120 (1106)
Q Consensus 68 ~~F~FD~VF~~~atQeeVYe~vv~plV~-svL~--G~--NatIfAYGQTGSGKTyTM~---------------------- 120 (1106)
..-+||.|-|-+..-+++.+.+..|+.. ..+. |. --.|+-||+.|+|||++..
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~ 255 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMY 255 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSC
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcc
Confidence 3568999988777667777777777753 3332 32 3568999999999998862
Q ss_pred -CChHhHHHHHHHhhhccc
Q 001290 121 -GITEYAIQDIYDYIDTHQ 138 (1106)
Q Consensus 121 -GIi~rai~dLF~~I~~~~ 138 (1106)
|-....++.+|.......
T Consensus 256 vGese~~ir~lF~~A~~~a 274 (434)
T 4b4t_M 256 IGEGAKLVRDAFALAKEKA 274 (434)
T ss_dssp SSHHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHhcC
Confidence 455677888887665443
No 44
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=75.68 E-value=1.2 Score=48.80 Aligned_cols=47 Identities=21% Similarity=0.211 Sum_probs=31.7
Q ss_pred CceecceecCCCCChHHHHHHHHHHHHHHhhcCCCc--ceeeeccCCCCCcccc
Q 001290 68 PAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINS--TFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 68 ~~F~FD~VF~~~atQeeVYe~vv~plV~svL~G~Na--tIfAYGQTGSGKTyTM 119 (1106)
..+.||.+.+ ++.+... ...++..+..|... .++-||++|+|||+.+
T Consensus 39 p~~~~~~ivG----~~~~~~~-l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 39 PRQASQGMVG----QLAARRA-AGVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp BCSEETTEES----CHHHHHH-HHHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred cCcchhhccC----hHHHHHH-HHHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 3566888877 4444433 23445555566654 7999999999999876
No 45
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=75.02 E-value=0.97 Score=49.05 Aligned_cols=51 Identities=22% Similarity=0.216 Sum_probs=33.2
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHH-Hhh----cCCCcceeeeccCCCCCcccc
Q 001290 69 AYTFDRVFGCECPTRQVYEEAAKEVTL-SVV----NGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 69 ~F~FD~VF~~~atQeeVYe~vv~plV~-svL----~G~NatIfAYGQTGSGKTyTM 119 (1106)
.++||.|.+.+..-+.+.+.+..|+.. ..+ -.....|+-||++|+|||+.+
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 568888888665555566555444321 111 123456899999999999875
No 46
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=74.88 E-value=0.64 Score=48.64 Aligned_cols=52 Identities=23% Similarity=0.263 Sum_probs=29.8
Q ss_pred CceecceecCCCCChHHHHHHHHHHHH-HHhhcCC----CcceeeeccCCCCCccccC
Q 001290 68 PAYTFDRVFGCECPTRQVYEEAAKEVT-LSVVNGI----NSTFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 68 ~~F~FD~VF~~~atQeeVYe~vv~plV-~svL~G~----NatIfAYGQTGSGKTyTM~ 120 (1106)
..++||.|.+.+....++-+ +...+- ..++.++ ...++-||++|+|||+.+.
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHH
Confidence 46889998876543333322 222111 0122222 2238999999999998863
No 47
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.66 E-value=2.9 Score=48.49 Aligned_cols=70 Identities=19% Similarity=0.345 Sum_probs=48.7
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHH-Hhhc--CC--CcceeeeccCCCCCccccC-----------------------
Q 001290 69 AYTFDRVFGCECPTRQVYEEAAKEVTL-SVVN--GI--NSTFFAYGQTSSGKTYTMG----------------------- 120 (1106)
Q Consensus 69 ~F~FD~VF~~~atQeeVYe~vv~plV~-svL~--G~--NatIfAYGQTGSGKTyTM~----------------------- 120 (1106)
.-+||-|-|-+.--+++.+.+..|+.. ..+. |. .-.|+-||+.|+|||++..
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~ 247 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYL 247 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSC
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhcccc
Confidence 468888888766666676666666643 2333 33 3459999999999998862
Q ss_pred CChHhHHHHHHHhhhccc
Q 001290 121 GITEYAIQDIYDYIDTHQ 138 (1106)
Q Consensus 121 GIi~rai~dLF~~I~~~~ 138 (1106)
|-.+..++.+|.......
T Consensus 248 Ge~e~~ir~lF~~A~~~a 265 (428)
T 4b4t_K 248 GEGPRMVRDVFRLARENA 265 (428)
T ss_dssp SHHHHHHHHHHHHHHHTC
T ss_pred chhHHHHHHHHHHHHHcC
Confidence 555678888998765543
No 48
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=74.26 E-value=0.83 Score=50.99 Aligned_cols=33 Identities=15% Similarity=0.105 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhcCCCcceeeeccCCCCCcccc
Q 001290 87 EEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 87 e~vv~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1106)
..+..-+-..+-.|...+|+-||++|+|||.++
T Consensus 30 ~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 30 TRIFLPIYDSLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 333333444445788889999999999999885
No 49
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=70.52 E-value=1.7 Score=43.92 Aligned_cols=48 Identities=15% Similarity=0.237 Sum_probs=29.5
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhhcCCCcceeeeccCCCCCccccCC
Q 001290 69 AYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGG 121 (1106)
Q Consensus 69 ~F~FD~VF~~~atQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1106)
.++||.+++. ..+..++..+ ..+ +..+....|+-||++|+|||+.+..
T Consensus 24 ~~~~~~~~~~-~~~~~~~~~l-~~~---~~~~~~~~~ll~G~~G~GKT~la~~ 71 (242)
T 3bos_A 24 DETFTSYYPA-AGNDELIGAL-KSA---ASGDGVQAIYLWGPVKSGRTHLIHA 71 (242)
T ss_dssp TCSTTTSCC---CCHHHHHHH-HHH---HHTCSCSEEEEECSTTSSHHHHHHH
T ss_pred CCChhhccCC-CCCHHHHHHH-HHH---HhCCCCCeEEEECCCCCCHHHHHHH
Confidence 4677776663 2334555433 222 2233567789999999999988643
No 50
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=68.82 E-value=1.8 Score=45.75 Aligned_cols=21 Identities=24% Similarity=0.143 Sum_probs=18.0
Q ss_pred cCCCcceeeeccCCCCCcccc
Q 001290 99 NGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM 119 (1106)
......|+-||++|+|||+.+
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 556678999999999999875
No 51
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=68.79 E-value=1.2 Score=47.61 Aligned_cols=51 Identities=12% Similarity=0.208 Sum_probs=31.8
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHH-Hhhc---CCCcceeeeccCCCCCcccc
Q 001290 69 AYTFDRVFGCECPTRQVYEEAAKEVTL-SVVN---GINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 69 ~F~FD~VF~~~atQeeVYe~vv~plV~-svL~---G~NatIfAYGQTGSGKTyTM 119 (1106)
...|+.+.+.+..-+.+.+.+..++.. .++. .....|+-||++|+|||+.+
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 567888888554444444444333321 1222 23567999999999999875
No 52
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.01 E-value=2 Score=50.06 Aligned_cols=71 Identities=24% Similarity=0.405 Sum_probs=49.3
Q ss_pred CceecceecCCCCChHHHHHHHHHHHHH-Hhhc--CC--CcceeeeccCCCCCccccC----------------------
Q 001290 68 PAYTFDRVFGCECPTRQVYEEAAKEVTL-SVVN--GI--NSTFFAYGQTSSGKTYTMG---------------------- 120 (1106)
Q Consensus 68 ~~F~FD~VF~~~atQeeVYe~vv~plV~-svL~--G~--NatIfAYGQTGSGKTyTM~---------------------- 120 (1106)
...+||.|-|-+..-+++.+.+..|+.. .++. |. .-.|+-||+.|+|||++..
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~ 255 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKY 255 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSS
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcccc
Confidence 3567888888766666677777666653 3343 33 3579999999999998862
Q ss_pred -CChHhHHHHHHHhhhccc
Q 001290 121 -GITEYAIQDIYDYIDTHQ 138 (1106)
Q Consensus 121 -GIi~rai~dLF~~I~~~~ 138 (1106)
|-....++.+|.......
T Consensus 256 ~Gese~~ir~~F~~A~~~~ 274 (437)
T 4b4t_L 256 IGESARIIREMFAYAKEHE 274 (437)
T ss_dssp SSHHHHHHHHHHHHHHHSC
T ss_pred chHHHHHHHHHHHHHHhcC
Confidence 444567888888765543
No 53
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=67.65 E-value=2.3 Score=46.39 Aligned_cols=51 Identities=24% Similarity=0.404 Sum_probs=31.8
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHH-HhhcCC---CcceeeeccCCCCCcccc
Q 001290 69 AYTFDRVFGCECPTRQVYEEAAKEVTL-SVVNGI---NSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 69 ~F~FD~VF~~~atQeeVYe~vv~plV~-svL~G~---NatIfAYGQTGSGKTyTM 119 (1106)
..+||.|.+.+..-+.+.+.+..|+.. ..+.+. ...|+-||++|+|||+.+
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 467888887554444444444444322 222332 346899999999999986
No 54
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=67.41 E-value=2.2 Score=42.04 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=16.9
Q ss_pred cCCCcceeeeccCCCCCccccC
Q 001290 99 NGINSTFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~ 120 (1106)
.+....++-||++|+|||+.+.
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~~ 56 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATAI 56 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 3444459999999999998753
No 55
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=67.38 E-value=2.7 Score=48.44 Aligned_cols=52 Identities=29% Similarity=0.417 Sum_probs=31.1
Q ss_pred CCCceecceecCCCCChHHHHHHHHHHHHHHhhcCCCcceeeeccCCCCCccccCC
Q 001290 66 YPPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGG 121 (1106)
Q Consensus 66 ~~~~F~FD~VF~~~atQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1106)
....|+||...... .+...+.. +..++.. .|....++-||++|+|||+.+..
T Consensus 98 l~~~~tfd~fv~g~-~n~~a~~~-~~~~a~~--~~~~~~lll~Gp~G~GKTtLa~a 149 (440)
T 2z4s_A 98 LNPDYTFENFVVGP-GNSFAYHA-ALEVAKH--PGRYNPLFIYGGVGLGKTHLLQS 149 (440)
T ss_dssp CCTTCSGGGCCCCT-TTHHHHHH-HHHHHHS--TTSSCCEEEECSSSSSHHHHHHH
T ss_pred CCCCCChhhcCCCC-chHHHHHH-HHHHHhC--CCCCCeEEEECCCCCCHHHHHHH
Confidence 35678999865322 23334432 2333332 23134688999999999998743
No 56
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=67.21 E-value=1.5 Score=47.78 Aligned_cols=47 Identities=23% Similarity=0.221 Sum_probs=28.4
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhh-cCCCcceeeeccCCCCCccccC
Q 001290 69 AYTFDRVFGCECPTRQVYEEAAKEVTLSVV-NGINSTFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 69 ~F~FD~VF~~~atQeeVYe~vv~plV~svL-~G~NatIfAYGQTGSGKTyTM~ 120 (1106)
.|.++.+++ ++...+.+.. .+..++ .+...+++-||++|+|||+++.
T Consensus 15 ~~~p~~~~g----r~~~~~~l~~-~l~~~~~~~~~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 15 DYVPDVLPH----REAELRRLAE-VLAPALRGEKPSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp TCCCSCCTT----CHHHHHHHHH-TTGGGTSSCCCCCEEECBCTTSSHHHHHH
T ss_pred ccCCCCCCC----HHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence 344444444 4455554432 223333 4556689999999999998764
No 57
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.80 E-value=3.2 Score=47.87 Aligned_cols=70 Identities=21% Similarity=0.323 Sum_probs=50.3
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHH-Hhhc--CC--CcceeeeccCCCCCccccC-----------------------
Q 001290 69 AYTFDRVFGCECPTRQVYEEAAKEVTL-SVVN--GI--NSTFFAYGQTSSGKTYTMG----------------------- 120 (1106)
Q Consensus 69 ~F~FD~VF~~~atQeeVYe~vv~plV~-svL~--G~--NatIfAYGQTGSGKTyTM~----------------------- 120 (1106)
.-+||.|-|-+.--+++-+.+.-|+.. .++. |. ...|+-||+.|+|||....
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~v 223 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYI 223 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhcccc
Confidence 467888888776666777777776653 3333 33 3579999999999999862
Q ss_pred CChHhHHHHHHHhhhccc
Q 001290 121 GITEYAIQDIYDYIDTHQ 138 (1106)
Q Consensus 121 GIi~rai~dLF~~I~~~~ 138 (1106)
|-.+..++.+|.......
T Consensus 224 Gese~~vr~lF~~Ar~~a 241 (405)
T 4b4t_J 224 GEGSRMVRELFVMAREHA 241 (405)
T ss_dssp THHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHHhC
Confidence 555778899998776544
No 58
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=66.68 E-value=0.94 Score=47.01 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=16.5
Q ss_pred CCcceeeeccCCCCCccccC
Q 001290 101 INSTFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 101 ~NatIfAYGQTGSGKTyTM~ 120 (1106)
....|+-||++|+|||+.+.
T Consensus 38 ~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 44568999999999998763
No 59
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=66.65 E-value=1.1 Score=49.85 Aligned_cols=51 Identities=16% Similarity=0.244 Sum_probs=30.9
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHh----hcCCCcceeeeccCCCCCcccc
Q 001290 69 AYTFDRVFGCECPTRQVYEEAAKEVTLSV----VNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 69 ~F~FD~VF~~~atQeeVYe~vv~plV~sv----L~G~NatIfAYGQTGSGKTyTM 119 (1106)
...||.+.+.+..-+.+.+.+..|+...- +.+....|+-||++|+|||+.+
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 45788887744333334443333322111 2345667999999999999876
No 60
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=66.54 E-value=1.1 Score=47.63 Aligned_cols=52 Identities=23% Similarity=0.263 Sum_probs=29.5
Q ss_pred CceecceecCCCCChHHHHHHHHHHHH-HHhhcCC----CcceeeeccCCCCCccccC
Q 001290 68 PAYTFDRVFGCECPTRQVYEEAAKEVT-LSVVNGI----NSTFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 68 ~~F~FD~VF~~~atQeeVYe~vv~plV-~svL~G~----NatIfAYGQTGSGKTyTM~ 120 (1106)
..++||.|.+.+....++.+ +...+- ..++.++ ...|+-||++|+|||+.+.
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHH
Confidence 46789988876543333322 222111 1122222 2238999999999998863
No 61
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=66.40 E-value=2.5 Score=46.37 Aligned_cols=46 Identities=20% Similarity=0.236 Sum_probs=29.2
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhhc-CCCcceeeeccCCCCCcccc
Q 001290 69 AYTFDRVFGCECPTRQVYEEAAKEVTLSVVN-GINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 69 ~F~FD~VF~~~atQeeVYe~vv~plV~svL~-G~NatIfAYGQTGSGKTyTM 119 (1106)
.|.++.+++ ++...+.+.. .+..++. +...+|+-||++|+|||+++
T Consensus 16 ~~~p~~l~g----r~~~~~~l~~-~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 16 LSVFKEIPF----REDILRDAAI-AIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp HHHCSSCTT----CHHHHHHHHH-HHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred ccCCCCCCC----hHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 455566655 4445554433 3344443 44558999999999999875
No 62
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=66.03 E-value=1.6 Score=42.78 Aligned_cols=19 Identities=16% Similarity=0.494 Sum_probs=15.6
Q ss_pred cceeeeccCCCCCccccCC
Q 001290 103 STFFAYGQTSSGKTYTMGG 121 (1106)
Q Consensus 103 atIfAYGQTGSGKTyTM~G 121 (1106)
..++-||++|+|||+.+..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~ 55 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQA 55 (149)
T ss_dssp SEEEEESSSTTTTCHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4577799999999998744
No 63
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=65.82 E-value=3 Score=48.08 Aligned_cols=47 Identities=13% Similarity=0.080 Sum_probs=32.5
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhhcCCC--cceeeeccCCCCCccccC
Q 001290 69 AYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGIN--STFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 69 ~F~FD~VF~~~atQeeVYe~vv~plV~svL~G~N--atIfAYGQTGSGKTyTM~ 120 (1106)
.|.||.|.+ |+++.+.+ ..++..+..|.. ..|+-||++|+|||+...
T Consensus 33 ~~~~~~iiG----~~~~~~~l-~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 33 KQAASGLVG----QENAREAC-GVIVELIKSKKMAGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp CSEETTEES----CHHHHHHH-HHHHHHHHTTCCTTCEEEEECCTTSSHHHHHH
T ss_pred hhchhhccC----HHHHHHHH-HHHHHHHHhCCCCCCeEEEECCCcCCHHHHHH
Confidence 567788776 55555543 345556666654 368889999999998863
No 64
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=64.21 E-value=1.7 Score=47.75 Aligned_cols=51 Identities=18% Similarity=0.330 Sum_probs=33.1
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHH-HhhcCC---CcceeeeccCCCCCcccc
Q 001290 69 AYTFDRVFGCECPTRQVYEEAAKEVTL-SVVNGI---NSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 69 ~F~FD~VF~~~atQeeVYe~vv~plV~-svL~G~---NatIfAYGQTGSGKTyTM 119 (1106)
..+||.|.+.+..-+.+.+.+..|+-. .++.|. ...|+-||++|+|||+.+
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 457888888655444555555444432 344442 246899999999999875
No 65
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.10 E-value=2.1 Score=50.31 Aligned_cols=70 Identities=19% Similarity=0.330 Sum_probs=47.9
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHH-Hhhc--C--CCcceeeeccCCCCCccccC-----------------------
Q 001290 69 AYTFDRVFGCECPTRQVYEEAAKEVTL-SVVN--G--INSTFFAYGQTSSGKTYTMG----------------------- 120 (1106)
Q Consensus 69 ~F~FD~VF~~~atQeeVYe~vv~plV~-svL~--G--~NatIfAYGQTGSGKTyTM~----------------------- 120 (1106)
..+||-|-|-+.--+++.+.+..|+.. ..+. | .--.|+-||+.|+|||++..
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~v 284 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYV 284 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSS
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccC
Confidence 467888887666556666666555542 3333 3 24579999999999998761
Q ss_pred CChHhHHHHHHHhhhccc
Q 001290 121 GITEYAIQDIYDYIDTHQ 138 (1106)
Q Consensus 121 GIi~rai~dLF~~I~~~~ 138 (1106)
|-....++.+|.......
T Consensus 285 Gesek~ir~lF~~Ar~~a 302 (467)
T 4b4t_H 285 GEGARMVRELFEMARTKK 302 (467)
T ss_dssp SHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHhcC
Confidence 555678888888765544
No 66
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=63.98 E-value=2.3 Score=43.10 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=18.2
Q ss_pred HHHhhcCCCcceeeeccCCCCCccc
Q 001290 94 TLSVVNGINSTFFAYGQTSSGKTYT 118 (1106)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyT 118 (1106)
+..++.|.| ++..++||||||.+
T Consensus 45 i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 45 IMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHhcCCC--EEEECCCCCcHHHH
Confidence 445567866 67889999999987
No 67
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.91 E-value=13 Score=43.36 Aligned_cols=70 Identities=17% Similarity=0.268 Sum_probs=49.1
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHH-Hhhc--C--CCcceeeeccCCCCCccccC-----------------------
Q 001290 69 AYTFDRVFGCECPTRQVYEEAAKEVTL-SVVN--G--INSTFFAYGQTSSGKTYTMG----------------------- 120 (1106)
Q Consensus 69 ~F~FD~VF~~~atQeeVYe~vv~plV~-svL~--G--~NatIfAYGQTGSGKTyTM~----------------------- 120 (1106)
.-+||.|=|-+.--+++.+.+..|+.. ..+. | .--.|+-||+.|+|||.+..
T Consensus 178 ~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~v 257 (437)
T 4b4t_I 178 TESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYL 257 (437)
T ss_dssp CCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSS
T ss_pred CCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccC
Confidence 467888877666666677776666642 2332 3 23579999999999998761
Q ss_pred CChHhHHHHHHHhhhccc
Q 001290 121 GITEYAIQDIYDYIDTHQ 138 (1106)
Q Consensus 121 GIi~rai~dLF~~I~~~~ 138 (1106)
|-.+..++.+|.......
T Consensus 258 Gesek~ir~lF~~Ar~~a 275 (437)
T 4b4t_I 258 GDGPRLCRQIFKVAGENA 275 (437)
T ss_dssp SHHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHhcC
Confidence 556778899998775544
No 68
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=63.85 E-value=1.4 Score=46.13 Aligned_cols=52 Identities=25% Similarity=0.288 Sum_probs=30.6
Q ss_pred CceecceecCCCCChHHHHHHHHHHHHH-Hhhc----CCCcceeeeccCCCCCccccC
Q 001290 68 PAYTFDRVFGCECPTRQVYEEAAKEVTL-SVVN----GINSTFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 68 ~~F~FD~VF~~~atQeeVYe~vv~plV~-svL~----G~NatIfAYGQTGSGKTyTM~ 120 (1106)
..+.|+.+.+.+..-+.+.+.+ ..+.. ..+. .....|+-||++|+|||+.+.
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELV-EYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHH-HHHHCGGGC-----CCCCEEEEECCTTSCHHHHHH
T ss_pred CCCCHHHhcCcHHHHHHHHHHH-HHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHH
Confidence 3578898888654444443322 22211 1111 234468999999999998763
No 69
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=63.43 E-value=12 Score=41.80 Aligned_cols=240 Identities=11% Similarity=0.176 Sum_probs=126.6
Q ss_pred CCCEEEEEEeCCCChhhhhcCCCcceEEe-cCceEEecCCCccCCCCCCceecceecCCCC-ChHHHHHHHHHHHHHHhh
Q 001290 21 EERILVFVRLRPLNEKEYARNDVSDWECI-NNNSIVFKNSLLERSVYPPAYTFDRVFGCEC-PTRQVYEEAAKEVTLSVV 98 (1106)
Q Consensus 21 eerIrV~VRVRPl~~~E~~~~~~~~~~~i-~~~tIv~~~~~~~~s~~~~~F~FD~VF~~~a-tQeeVYe~vv~plV~svL 98 (1106)
.|.||+|+=+-+-. -+..+.+. .+.+|. +. .....|.|++|++... +-.+++..-+...++.++
T Consensus 58 KG~IRcFAYi~~~~-------~p~~~~idY~~~~It--~~-----~~~~~y~FnRiIp~~~~~e~~~l~qE~q~y~DmcL 123 (333)
T 4etp_B 58 KGTMRVYAYVMEQN-------LPENLLFDYENGVIT--QG-----LSEHVYKFNRVIPHLKVSEDCFFTQEYSVYHDMAL 123 (333)
T ss_dssp HTCCEEEEEECCSS-------CCSSCEEETTTTEEE--C-------CCCEEECSEEEETTTCCHHHHHHHTTHHHHHHHH
T ss_pred cCcEEEEEEECccc-------CCccEEEecccceEe--ec-----CCcceEEEeeeechhhcchHHHHHHHHHHHHHHHH
Confidence 35788888776621 11123322 233553 11 1246999999997765 445566666799999888
Q ss_pred -cCCCcceeeeccCCCCCccccCCChHhHHHHHHHhhhcc---ccceEEEEeeEEEEeccc-ccccCCCCC----CC--c
Q 001290 99 -NGINSTFFAYGQTSSGKTYTMGGITEYAIQDIYDYIDTH---QEREFVLKFSAMEIYNES-VRDLLSTDS----TP--L 167 (1106)
Q Consensus 99 -~G~NatIfAYGQTGSGKTyTM~GIi~rai~dLF~~I~~~---~~~~f~V~vS~lEIYNE~-V~DLLs~~s----~~--L 167 (1106)
.+.|+.||..|+.- .+.....++..+..+ -...|.+.+-|+.+-++. ..|||.+.+ .. +
T Consensus 124 ~~~~NfslIsis~~~----------w~~Lr~~lL~fi~~k~~~Y~~~y~i~lQ~V~Lse~~~S~DlL~~~~~~~~~~I~l 193 (333)
T 4etp_B 124 NQKKNFNLISLSTTP----------HGSLRESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDYSHNDKDSIKL 193 (333)
T ss_dssp HTTCCEEEEEEESSC----------CCHHHHHHHHHHHSTTCHHHHHEEEEEEEEECCSSSCCEESSCC----------C
T ss_pred ccCCCeeEEEecCCC----------cHHHHHHHHHHHHhcccccccceEEEEEEEEEcCCCchhhhhccccccCCCCceE
Confidence 99999999998762 123445555555554 236788999998887776 789998753 22 2
Q ss_pred eeeeCCCCCeEecCceEEEecCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEE
Q 001290 168 RLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVN 247 (1106)
Q Consensus 168 ~i~ed~~~g~~V~gLtev~V~S~eE~l~LL~~G~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~ 247 (1106)
++.+ ...--+-+.+.+.+..+.+.++.. ..+.-+ .-...-.|+.+.+...... ..++..+..-..+
T Consensus 194 kiee----~sI~ldS~~i~i~~~~~~l~~~~k-------l~~~~~-~~~~GI~IlKfqf~~~~~~--~~~n~~~~~~~fY 259 (333)
T 4etp_B 194 KFEK----HSISLDSKLVIIENGLEDLPLNFS-------ADEHPN-LPHSGMGIIKVQFFPRDSK--SDGNNDPVPVDFY 259 (333)
T ss_dssp EEET----TEEECCSCCEEESSGGGGSCTTSS-------CCC---------CEEEEEEEEECC----------CCCEEEE
T ss_pred Eeec----ceEeecceEEEeccccccchhhhc-------cccCCC-CCCCCceEEEEEEEecCcc--cccccCCcceeEE
Confidence 2222 112223344555554432222110 000000 0112344666776654332 1122222344678
Q ss_pred EEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCCccCCCCChhhHhhhhccCCCceeeEEEecCCCCc
Q 001290 248 FVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARS 327 (1106)
Q Consensus 248 fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~ 327 (1106)
||.+-+.. .+..|.++|.. ++ .-.|+++-+|+.-| -..+.++|+++.-...
T Consensus 260 FiEi~~~~--------------------ti~~l~~~i~~---~~-----~~~spi~~ilkkLl-~~TKS~flfnl~~~~~ 310 (333)
T 4etp_B 260 FIELNNLK--------------------SIEQFDKSIFK---KE-----SAETPIALVLKKLI-SDTKSFFLLNLNDSKN 310 (333)
T ss_dssp EEEECSHH--------------------HHHHHHSCC------------CCCCHHHHHHHHHH-HHSBCEEEEEECCSTT
T ss_pred EEEecChh--------------------HHHHHHhhcCc---cc-----ccCCCHHHHHHHHH-hhCcceEEEEcCCcch
Confidence 88875443 12333333322 11 23467777777655 3467889999975543
No 70
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=63.30 E-value=3.1 Score=41.51 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=17.6
Q ss_pred HHHhhcCCCcceeeeccCCCCCcccc
Q 001290 94 TLSVVNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyTM 119 (1106)
+..++.|.| ++..++||||||.+.
T Consensus 34 i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 34 IPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHccCCC--EEEECCCCCchHHHH
Confidence 344567766 577889999999653
No 71
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=62.61 E-value=2.6 Score=41.98 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=17.5
Q ss_pred HHHhhcCCCcceeeeccCCCCCccc
Q 001290 94 TLSVVNGINSTFFAYGQTSSGKTYT 118 (1106)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyT 118 (1106)
+..+++|.+ ++..++||||||.+
T Consensus 32 i~~~~~~~~--~li~~~TGsGKT~~ 54 (207)
T 2gxq_A 32 LPLALEGKD--LIGQARTGTGKTLA 54 (207)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHcCCCC--EEEECCCCChHHHH
Confidence 344567766 66778999999986
No 72
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=62.32 E-value=3.8 Score=45.67 Aligned_cols=51 Identities=24% Similarity=0.404 Sum_probs=32.0
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHH-HhhcCC---CcceeeeccCCCCCcccc
Q 001290 69 AYTFDRVFGCECPTRQVYEEAAKEVTL-SVVNGI---NSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 69 ~F~FD~VF~~~atQeeVYe~vv~plV~-svL~G~---NatIfAYGQTGSGKTyTM 119 (1106)
..+|+.|.+.+..-+.+.+.+..|+-. .++.+. ...|+-||++|+|||+.+
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 467888888555444455444444321 223322 245889999999999886
No 73
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=61.96 E-value=40 Score=32.75 Aligned_cols=65 Identities=15% Similarity=0.326 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001290 358 KALVKQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSIG 426 (1106)
Q Consensus 358 ~alik~Lq~Ei~rLe~eL~~l~~~~~~~~~~ll~e~~~~i~ele~~i~EL~~erd~~~~~i~~L~q~~~ 426 (1106)
..+|.+|+.|+.+|+.++..+... .......+..++..|+.++.+-+.+++.+....+.|...+.
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~~E----~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMKTE----SQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999887431 11123334444555555555554455555555555554433
No 74
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=61.84 E-value=4.2 Score=44.44 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=28.7
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhhcCCC-c--ceeeeccCCCCCcccc
Q 001290 69 AYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGIN-S--TFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 69 ~F~FD~VF~~~atQeeVYe~vv~plV~svL~G~N-a--tIfAYGQTGSGKTyTM 119 (1106)
.|.++.+++ ++...+.+. ..+..++.|.. . +++-||++|+|||+++
T Consensus 13 ~~~p~~l~g----r~~~~~~l~-~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 13 SYVPKRLPH----REQQLQQLD-ILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp TCCCSCCTT----CHHHHHHHH-HHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred ccCCCCCCC----hHHHHHHHH-HHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 455565555 444444442 23444444433 4 6899999999999876
No 75
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=61.49 E-value=3.5 Score=45.18 Aligned_cols=42 Identities=33% Similarity=0.481 Sum_probs=26.6
Q ss_pred ecceecCCCCChHHHHHHHHHHHHHHhhcCCCcceeeeccCCCCCccccC
Q 001290 71 TFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 71 ~FD~VF~~~atQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1106)
.|+.+++ |..+.+. +-..+-.|.-..++-||+.|+|||+++.
T Consensus 23 ~~~~~~g----~~~~~~~----L~~~i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 23 TLDEVYG----QNEVITT----VRKFVDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp SGGGCCS----CHHHHHH----HHHHHHTTCCCCEEEECSSSSSHHHHHH
T ss_pred cHHHhcC----cHHHHHH----HHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 4666665 4444443 3333345543337889999999999874
No 76
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=61.21 E-value=2 Score=45.79 Aligned_cols=20 Identities=20% Similarity=0.135 Sum_probs=16.4
Q ss_pred CCCcceeeeccCCCCCcccc
Q 001290 100 GINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 100 G~NatIfAYGQTGSGKTyTM 119 (1106)
.....|+-||++|+|||++.
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 33446899999999999876
No 77
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=58.90 E-value=3.3 Score=42.77 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=18.7
Q ss_pred HHHHhhcCCCcceeeeccCCCCCccc
Q 001290 93 VTLSVVNGINSTFFAYGQTSSGKTYT 118 (1106)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyT 118 (1106)
++..++.|.+ ++..++||||||.+
T Consensus 59 ~i~~~~~~~~--~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 59 AIPVMLHGRE--LLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHH
Confidence 3445677877 67888999999986
No 78
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=58.24 E-value=2.3 Score=47.68 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=30.6
Q ss_pred CceecceecCCCCChHHHHHHHHHHHHH-Hhhc---CCCcceeeeccCCCCCcccc
Q 001290 68 PAYTFDRVFGCECPTRQVYEEAAKEVTL-SVVN---GINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 68 ~~F~FD~VF~~~atQeeVYe~vv~plV~-svL~---G~NatIfAYGQTGSGKTyTM 119 (1106)
..+.||.+.+.+.--+.+.+.+..++.. .++. .....|+-||++|+|||+.+
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 4567888888443333333333333221 1111 22457999999999999875
No 79
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=57.54 E-value=1.2 Score=48.14 Aligned_cols=51 Identities=14% Similarity=0.104 Sum_probs=27.6
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHH-HhhcCCC----cceeeeccCCCCCcccc
Q 001290 69 AYTFDRVFGCECPTRQVYEEAAKEVTL-SVVNGIN----STFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 69 ~F~FD~VF~~~atQeeVYe~vv~plV~-svL~G~N----atIfAYGQTGSGKTyTM 119 (1106)
..+||.|-+.+.--+.+.+.+..|+-. .++.+++ ..++-||+.|+|||+.+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 456777766555445555555444432 2333332 23899999999999875
No 80
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=57.33 E-value=21 Score=31.95 Aligned_cols=26 Identities=12% Similarity=0.380 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001290 394 EQVIEEMDRQIRELTKERDLAKSRVD 419 (1106)
Q Consensus 394 ~~~i~ele~~i~EL~~erd~~~~~i~ 419 (1106)
+..|+++++++.+...+...++++++
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 81
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=57.15 E-value=2.3 Score=44.08 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=18.4
Q ss_pred HHHHhhcCCCcceeeeccCCCCCccc
Q 001290 93 VTLSVVNGINSTFFAYGQTSSGKTYT 118 (1106)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyT 118 (1106)
++..++.|.| ++..++||||||.+
T Consensus 60 ai~~i~~~~~--~li~apTGsGKT~~ 83 (237)
T 3bor_A 60 AIIPCIKGYD--VIAQAQSGTGKTAT 83 (237)
T ss_dssp HHHHHHTTCC--EEECCCSSHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHH
Confidence 3445567876 67789999999976
No 82
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=56.53 E-value=41 Score=30.69 Aligned_cols=57 Identities=21% Similarity=0.368 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001290 361 VKQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSI 425 (1106)
Q Consensus 361 ik~Lq~Ei~rLe~eL~~l~~~~~~~~~~ll~e~~~~i~ele~~i~EL~~erd~~~~~i~~L~q~~ 425 (1106)
|.-||.|+..|+.+...+.. -..+.....+.+..++..|+.++...+.+++.|+-.+
T Consensus 22 I~lLqmEieELKekN~~L~~--------e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQ--------EVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555554433321 1122223344588888889999999999998887654
No 83
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=56.22 E-value=50 Score=30.54 Aligned_cols=64 Identities=25% Similarity=0.316 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001290 361 VKQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSIGE 427 (1106)
Q Consensus 361 ik~Lq~Ei~rLe~eL~~l~~~~~~~~~~ll~e~~~~i~ele~~i~EL~~erd~~~~~i~~L~q~~~~ 427 (1106)
|+.|..+++.|+.++..++... ...+-...+..|..+..+|..+..++..+..++++|...+.+
T Consensus 25 VR~LEqqN~~Le~~i~~l~~~~---~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~ 88 (93)
T 3s4r_A 25 VRFLEQQNKILLAELEQLKGQG---KSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMR 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcc---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888888888777665421 112333456778999999999999999999999887655443
No 84
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=55.94 E-value=4 Score=41.91 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=17.6
Q ss_pred HHHhhcCCCcceeeeccCCCCCccc
Q 001290 94 TLSVVNGINSTFFAYGQTSSGKTYT 118 (1106)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyT 118 (1106)
+..++.|.+ ++..++||||||.+
T Consensus 56 i~~~~~~~~--~li~a~TGsGKT~~ 78 (236)
T 2pl3_A 56 IGLALQGKD--VLGAAKTGSGKTLA 78 (236)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHhCCCC--EEEEeCCCCcHHHH
Confidence 345567876 56778999999986
No 85
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=55.52 E-value=3.6 Score=47.45 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=21.6
Q ss_pred HHHHHhhcCCCcceeeeccCCCCCccccC
Q 001290 92 EVTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 92 plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1106)
.++..++..-...|...|+||||||+||.
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 34455555556678899999999999973
No 86
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=55.40 E-value=5.4 Score=43.24 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=28.3
Q ss_pred ecceecCCCCChHHHHHHHHHHHHHHhh--cCCCcceeeeccCCCCCcccc
Q 001290 71 TFDRVFGCECPTRQVYEEAAKEVTLSVV--NGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 71 ~FD~VF~~~atQeeVYe~vv~plV~svL--~G~NatIfAYGQTGSGKTyTM 119 (1106)
+|+.+.+ ++.+.+.+ ...+..+. .+....|+-||++|+|||+.+
T Consensus 27 ~~~~iiG----~~~~~~~l-~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIG----QESIKKNL-NVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCS----CHHHHHHH-HHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCC----hHHHHHHH-HHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 5677666 44555443 33333333 344567999999999999865
No 87
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=54.33 E-value=3.6 Score=43.54 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=18.2
Q ss_pred HHHHhhcCCCcceeeeccCCCCCccc
Q 001290 93 VTLSVVNGINSTFFAYGQTSSGKTYT 118 (1106)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyT 118 (1106)
++..++.|.| +++.++||||||.+
T Consensus 84 ~i~~~~~~~~--~lv~a~TGsGKT~~ 107 (262)
T 3ly5_A 84 SIRPLLEGRD--LLAAAKTGSGKTLA 107 (262)
T ss_dssp HHHHHHHTCC--CEECCCTTSCHHHH
T ss_pred HHHHHhCCCc--EEEEccCCCCchHH
Confidence 3445567866 67889999999976
No 88
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=53.96 E-value=4.5 Score=40.95 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=17.8
Q ss_pred HHHhhcCCCcceeeeccCCCCCcccc
Q 001290 94 TLSVVNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyTM 119 (1106)
+..+++|.| ++..++||||||.+.
T Consensus 45 i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 45 IPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCchhhhh
Confidence 345567876 567789999999764
No 89
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=52.39 E-value=4.9 Score=43.68 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=20.0
Q ss_pred HHHHhhcCCCcceeeeccCCCCCccc
Q 001290 93 VTLSVVNGINSTFFAYGQTSSGKTYT 118 (1106)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyT 118 (1106)
.+..++.|....+++.++||||||.+
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~a 147 (300)
T 3fmo_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (300)
T ss_dssp HHHHHTSSSCCCEEEECCTTSSHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCCccHH
Confidence 44566777445578899999999976
No 90
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=52.35 E-value=2.4 Score=42.32 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=16.8
Q ss_pred HhhcCCCcceeeeccCCCCCcccc
Q 001290 96 SVVNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 96 svL~G~NatIfAYGQTGSGKTyTM 119 (1106)
.++.|.+ ++..|+||+|||.+.
T Consensus 44 ~~~~~~~--~li~~~tGsGKT~~~ 65 (216)
T 3b6e_A 44 PALEGKN--IIICLPTGSGKTRVA 65 (216)
T ss_dssp HHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHhcCCC--EEEEcCCCCCHHHHH
Confidence 3456655 567899999999876
No 91
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=52.03 E-value=4.2 Score=44.06 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=27.5
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhh-cCCCcceeeeccCCCCCcccc
Q 001290 69 AYTFDRVFGCECPTRQVYEEAAKEVTLSVV-NGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 69 ~F~FD~VF~~~atQeeVYe~vv~plV~svL-~G~NatIfAYGQTGSGKTyTM 119 (1106)
.|.++.+++ .+...+.+.. .+..++ .+....++-||++|+|||+.+
T Consensus 16 ~~~p~~~~g----r~~e~~~l~~-~l~~~~~~~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 16 DYIPDELPH----REDQIRKIAS-ILAPLYREEKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp SCCCSCCTT----CHHHHHHHHH-SSGGGGGTCCCCCEEEEECTTSSHHHHH
T ss_pred ccCCCCCCC----hHHHHHHHHH-HHHHHHcCCCCCeEEEECCCCCCHHHHH
Confidence 455555555 3344443322 222332 344568999999999999876
No 92
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=51.89 E-value=4.9 Score=41.73 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=17.6
Q ss_pred HHHhhcCCCcceeeeccCCCCCcccc
Q 001290 94 TLSVVNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyTM 119 (1106)
+..++.|.| ++..++||||||.+.
T Consensus 54 i~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 54 IPAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 345567876 567789999999763
No 93
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=51.83 E-value=4.1 Score=45.98 Aligned_cols=25 Identities=28% Similarity=0.334 Sum_probs=18.7
Q ss_pred HhhcCCCcceeeeccCCCCCccccC
Q 001290 96 SVVNGINSTFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 96 svL~G~NatIfAYGQTGSGKTyTM~ 120 (1106)
+++.--.+.|...|+||||||++|.
T Consensus 117 ~l~~~~~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 117 RVSDVPRGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp HHHHCSSEEEEEECSTTSCHHHHHH
T ss_pred HHHhCCCCEEEEECCCCCCHHHHHH
Confidence 3344444578888999999999973
No 94
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=51.83 E-value=4.8 Score=41.06 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=17.6
Q ss_pred HHHhhcCCCcceeeeccCCCCCccc
Q 001290 94 TLSVVNGINSTFFAYGQTSSGKTYT 118 (1106)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyT 118 (1106)
+..++.|.|. +..++||||||.+
T Consensus 51 i~~~~~~~~~--l~~apTGsGKT~~ 73 (228)
T 3iuy_A 51 WPIILQGIDL--IVVAQTGTGKTLS 73 (228)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHH
T ss_pred HHHHhCCCCE--EEECCCCChHHHH
Confidence 3455678764 6778999999976
No 95
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=51.77 E-value=5.7 Score=43.65 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=19.6
Q ss_pred HHHHhhcCCCcceeeeccCCCCCcccc
Q 001290 93 VTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM 119 (1106)
++..++.|.+ ++..++||||||.+.
T Consensus 70 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 70 AILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HhHHHhCCCC--EEEECCCCCcccHHH
Confidence 4456678887 677899999999873
No 96
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=51.59 E-value=6.6 Score=43.19 Aligned_cols=45 Identities=18% Similarity=0.294 Sum_probs=25.2
Q ss_pred ecceecCCCCChHHHHHHHHHHHHHHhhcC-CCcceeeeccCCCCCcccc
Q 001290 71 TFDRVFGCECPTRQVYEEAAKEVTLSVVNG-INSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 71 ~FD~VF~~~atQeeVYe~vv~plV~svL~G-~NatIfAYGQTGSGKTyTM 119 (1106)
.|+.+|+ |..+.+.+...+-.....| ....++-||++|+|||+.+
T Consensus 23 ~l~~~~g----~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 23 SLDEFIG----QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp SGGGCCS----CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHH
T ss_pred cHHHccC----cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHH
Confidence 5677776 3445444322211111112 2234777999999999886
No 97
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=51.08 E-value=3.5 Score=47.52 Aligned_cols=52 Identities=19% Similarity=0.369 Sum_probs=30.1
Q ss_pred CceecceecCCCCChHHHHHHHHHHHHH-HhhcC---CCcceeeeccCCCCCcccc
Q 001290 68 PAYTFDRVFGCECPTRQVYEEAAKEVTL-SVVNG---INSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 68 ~~F~FD~VF~~~atQeeVYe~vv~plV~-svL~G---~NatIfAYGQTGSGKTyTM 119 (1106)
....||.|.+.+..-+.+.+.+..|+.. .++.| ....|+-||++|+|||+.+
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 3567888887443333333333333221 22333 2356899999999999875
No 98
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=50.64 E-value=5.5 Score=38.27 Aligned_cols=21 Identities=14% Similarity=0.385 Sum_probs=17.0
Q ss_pred cCCCcceeeeccCCCCCcccc
Q 001290 99 NGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM 119 (1106)
...+..|+-||++|+|||+..
T Consensus 21 a~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHH
Confidence 345567899999999999765
No 99
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=49.77 E-value=4.6 Score=47.38 Aligned_cols=51 Identities=20% Similarity=0.282 Sum_probs=31.7
Q ss_pred ceecceecCCCCChHHHHHHHHHHHH-----HHhhcCCCcceeeeccCCCCCcccc
Q 001290 69 AYTFDRVFGCECPTRQVYEEAAKEVT-----LSVVNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 69 ~F~FD~VF~~~atQeeVYe~vv~plV-----~svL~G~NatIfAYGQTGSGKTyTM 119 (1106)
...|+.+.+.+..-+.+.+.+..++. ..+-......|+-||++|+|||+.+
T Consensus 200 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHH
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHH
Confidence 35677777755544555555544322 1111234567999999999999865
No 100
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=49.37 E-value=6.1 Score=41.72 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=16.0
Q ss_pred CcceeeeccCCCCCccccC
Q 001290 102 NSTFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 102 NatIfAYGQTGSGKTyTM~ 120 (1106)
...|+-||++|+|||+++.
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4578899999999998763
No 101
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=49.22 E-value=5.3 Score=41.39 Aligned_cols=23 Identities=30% Similarity=0.448 Sum_probs=17.1
Q ss_pred HHHhhcCCCcceeeeccCCCCCccc
Q 001290 94 TLSVVNGINSTFFAYGQTSSGKTYT 118 (1106)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyT 118 (1106)
+..++.|.| +++.++||||||.+
T Consensus 60 i~~~~~g~~--~l~~apTGsGKT~~ 82 (242)
T 3fe2_A 60 WPVALSGLD--MVGVAQTGSGKTLS 82 (242)
T ss_dssp HHHHHHTCC--EEEEECTTSCHHHH
T ss_pred HHHHhCCCC--EEEECCCcCHHHHH
Confidence 344567876 56667999999987
No 102
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=48.98 E-value=5.9 Score=40.69 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=16.9
Q ss_pred HHhhcCCCcceeeeccCCCCCccc
Q 001290 95 LSVVNGINSTFFAYGQTSSGKTYT 118 (1106)
Q Consensus 95 ~svL~G~NatIfAYGQTGSGKTyT 118 (1106)
..++.|.| ++..++||||||.+
T Consensus 56 ~~~~~~~~--~l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 56 PLGRCGLD--LIVQAKSGTGKTCV 77 (230)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHhCCCC--EEEECCCCCcHHHH
Confidence 34567876 56678999999976
No 103
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=48.81 E-value=8.4 Score=36.92 Aligned_cols=21 Identities=19% Similarity=0.055 Sum_probs=16.8
Q ss_pred CCcceeeeccCCCCCccccCC
Q 001290 101 INSTFFAYGQTSSGKTYTMGG 121 (1106)
Q Consensus 101 ~NatIfAYGQTGSGKTyTM~G 121 (1106)
.+..|+-||++|+|||+....
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~ 46 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARY 46 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGG
T ss_pred CCCcEEEECCCCccHHHHHHH
Confidence 345688899999999987654
No 104
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=48.80 E-value=4.8 Score=41.70 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=17.8
Q ss_pred HHHHhhcCCCcceeeeccCCCCCcccc
Q 001290 93 VTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM 119 (1106)
++..+..|. .++..|+||||||..+
T Consensus 69 ~i~~i~~g~--~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 69 ILEAISQNS--VVIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHCS--EEEEECCTTSSHHHHH
T ss_pred HHHHHhcCC--EEEEEeCCCCCcHHhH
Confidence 344555665 4677899999999754
No 105
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=48.53 E-value=5.2 Score=47.18 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=18.9
Q ss_pred HHHHHhhcCCCcceeeeccCCCCCccccC
Q 001290 92 EVTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 92 plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1106)
.++..+..|...+|++ ++||||||.++.
T Consensus 189 ~~~~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 189 RAVQSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHHHHhcCCCceEEE-ecCCCChHHHHH
Confidence 3444444576655444 899999999964
No 106
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=48.38 E-value=6.8 Score=38.81 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=14.9
Q ss_pred cceeeeccCCCCCcccc
Q 001290 103 STFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 103 atIfAYGQTGSGKTyTM 119 (1106)
..++-||++|+|||+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999875
No 107
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=48.07 E-value=6.2 Score=41.37 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=17.7
Q ss_pred HHHhhcCCCcceeeeccCCCCCcccc
Q 001290 94 TLSVVNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyTM 119 (1106)
+..++.|.+ ++..++||||||.+.
T Consensus 74 i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 74 IPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEcCCCCCchhHh
Confidence 445567866 566779999999763
No 108
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=47.88 E-value=7.7 Score=44.94 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=28.3
Q ss_pred ecceecCCCCChHHHHHHHHHHHHHHhhcCCCcceeeeccCCCCCccccCCC
Q 001290 71 TFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGI 122 (1106)
Q Consensus 71 ~FD~VF~~~atQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~GI 122 (1106)
.||.|.|. +..... ++..+..+....++-||++|+|||+.+.++
T Consensus 178 ~ld~iiGr----~~~i~~----l~~~l~r~~~~~~LL~G~pG~GKT~la~~l 221 (468)
T 3pxg_A 178 SLDPVIGR----SKEIQR----VIEVLSRRTKNNPVLIGEPGVGKTAIAEGL 221 (468)
T ss_dssp CSCCCCCC----HHHHHH----HHHHHHCSSSCEEEEESCTTTTTHHHHHHH
T ss_pred CCCCccCc----HHHHHH----HHHHHhccCCCCeEEECCCCCCHHHHHHHH
Confidence 56777663 333333 333333455566788999999999987554
No 109
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=47.64 E-value=3.8 Score=47.47 Aligned_cols=44 Identities=16% Similarity=0.339 Sum_probs=28.0
Q ss_pred ecceecCCCCChHHHHHHHHHHHHHHhhcCCCcceeeeccCCCCCcccc
Q 001290 71 TFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 71 ~FD~VF~~~atQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1106)
+||.|++ |+.+... ...+...+-.|.-..++-||++|+|||+.+
T Consensus 24 ~l~~ivG----q~~~~~~-~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 24 NLAQYIG----QQHLLAA-GKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp STTTCCS----CHHHHST-TSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred CHHHhCC----cHHHHhc-hHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 4666665 5555521 133333444555568999999999999875
No 110
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=46.79 E-value=17 Score=45.41 Aligned_cols=69 Identities=19% Similarity=0.367 Sum_probs=49.6
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHH-HhhcCCC----cceeeeccCCCCCccccC-----------------------
Q 001290 69 AYTFDRVFGCECPTRQVYEEAAKEVTL-SVVNGIN----STFFAYGQTSSGKTYTMG----------------------- 120 (1106)
Q Consensus 69 ~F~FD~VF~~~atQeeVYe~vv~plV~-svL~G~N----atIfAYGQTGSGKTyTM~----------------------- 120 (1106)
..+||.|-|-+..-+++.+.+.-|+.. .++.++. ..|+-||+.|+|||....
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCT
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccc
Confidence 467888888877777787777666653 4555544 469999999999998762
Q ss_pred CChHhHHHHHHHhhhcc
Q 001290 121 GITEYAIQDIYDYIDTH 137 (1106)
Q Consensus 121 GIi~rai~dLF~~I~~~ 137 (1106)
|-....++.+|.....+
T Consensus 280 gese~~lr~lF~~A~~~ 296 (806)
T 3cf2_A 280 GESESNLRKAFEEAEKN 296 (806)
T ss_dssp THHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHc
Confidence 34456678888766544
No 111
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=46.46 E-value=6.9 Score=42.86 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=20.4
Q ss_pred HHHHhhcCCCcceeeeccCCCCCcccc
Q 001290 93 VTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM 119 (1106)
++..++.|.+..++..++||||||.+.
T Consensus 55 ~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 55 ALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 345567775566788899999999873
No 112
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=46.35 E-value=7.1 Score=46.15 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=17.7
Q ss_pred HhhcCCCcceeeeccCCCCCccccC
Q 001290 96 SVVNGINSTFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 96 svL~G~NatIfAYGQTGSGKTyTM~ 120 (1106)
.+-.|.+ |...|+||||||+||.
T Consensus 256 ~v~~g~~--i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 256 AIEHKFS--AIVVGETASGKTTTLN 278 (511)
T ss_dssp HHHTTCC--EEEEESTTSSHHHHHH
T ss_pred HHhCCCE--EEEECCCCCCHHHHHH
Confidence 3346766 6778999999999973
No 113
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=45.92 E-value=7.4 Score=41.36 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=26.4
Q ss_pred ecceecCCCCChHHHHHHHHHHHHHHhhcCCCcceeeeccCCCCCccccC
Q 001290 71 TFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 71 ~FD~VF~~~atQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1106)
.|+.+.+ ++++.+.+. ..+-.|....++-||++|+|||+++.
T Consensus 23 ~~~~~~g----~~~~~~~l~----~~l~~~~~~~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 23 RLDDIVG----QEHIVKRLK----HYVKTGSMPHLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp STTTCCS----CHHHHHHHH----HHHHHTCCCEEEEESCTTSSHHHHHH
T ss_pred CHHHhhC----CHHHHHHHH----HHHHcCCCCeEEEECcCCCCHHHHHH
Confidence 4666655 455554432 22234544458999999999998764
No 114
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=45.49 E-value=6.6 Score=44.78 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=20.8
Q ss_pred HHHHhhcCCCcceeeeccCCCCCccc
Q 001290 93 VTLSVVNGINSTFFAYGQTSSGKTYT 118 (1106)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyT 118 (1106)
++..++.|.+..++..|+||||||..
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 44566777667789999999999976
No 115
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=45.35 E-value=8.6 Score=41.98 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=22.8
Q ss_pred HHHHHHhhcCC---CcceeeeccCCCCCcccc
Q 001290 91 KEVTLSVVNGI---NSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 91 ~plV~svL~G~---NatIfAYGQTGSGKTyTM 119 (1106)
...+..++.|. --||+-||+.|+|||+..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 44466778887 337999999999999875
No 116
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=44.83 E-value=7.6 Score=42.07 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=19.3
Q ss_pred HHHhhcCCCcceeeeccCCCCCcccc
Q 001290 94 TLSVVNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyTM 119 (1106)
+..++.|....++..++||||||.+.
T Consensus 36 i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 36 LPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 44556774456788899999999763
No 117
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=44.75 E-value=4.6 Score=41.03 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=16.6
Q ss_pred HHhhcCCCcceeeeccCCCCCccc
Q 001290 95 LSVVNGINSTFFAYGQTSSGKTYT 118 (1106)
Q Consensus 95 ~svL~G~NatIfAYGQTGSGKTyT 118 (1106)
..+++|.| ++..++||||||.+
T Consensus 36 ~~~~~~~~--~lv~a~TGsGKT~~ 57 (219)
T 1q0u_A 36 PGALRGES--MVGQSQTGTGKTHA 57 (219)
T ss_dssp HHHHHTCC--EEEECCSSHHHHHH
T ss_pred HHHhCCCC--EEEECCCCChHHHH
Confidence 44567766 46778999999986
No 118
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=44.56 E-value=44 Score=38.30 Aligned_cols=63 Identities=14% Similarity=0.285 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001290 363 QLQKELARLENEMKNLQSTPKKCDFT---LLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSI 425 (1106)
Q Consensus 363 ~Lq~Ei~rLe~eL~~l~~~~~~~~~~---ll~e~~~~i~ele~~i~EL~~erd~~~~~i~~L~q~~ 425 (1106)
.||++|.++++.+..++.....|..+ +..-++.+..+-+++|+||+.+...+..+++++..++
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (471)
T 3mq9_A 401 LLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEV 466 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777666665544445443 2223333333333455555555555555555544443
No 119
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=44.34 E-value=6.5 Score=42.46 Aligned_cols=43 Identities=19% Similarity=0.225 Sum_probs=27.0
Q ss_pred eecceecCCCCChHHHHHHHHHHHHHHhhcCCCcceeeeccCCCCCccccC
Q 001290 70 YTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 70 F~FD~VF~~~atQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1106)
..|+.+.+.+. +.+ .+...+..|....++-||++|+|||+++.
T Consensus 34 ~~~~~i~g~~~----~~~----~l~~~l~~~~~~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 34 KNLDEVTAQDH----AVT----VLKKTLKSANLPHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp SSTTTCCSCCT----THH----HHHHHTTCTTCCCEEEECSTTSSHHHHHH
T ss_pred CCHHHhhCCHH----HHH----HHHHHHhcCCCCEEEEECCCCCCHHHHHH
Confidence 35777776433 322 23333445543448899999999999864
No 120
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=44.14 E-value=14 Score=39.34 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=27.3
Q ss_pred eecceecCCCCChHHHHHHHHHHHHHHhh--cCCCcceeeeccCCCCCcccc
Q 001290 70 YTFDRVFGCECPTRQVYEEAAKEVTLSVV--NGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 70 F~FD~VF~~~atQeeVYe~vv~plV~svL--~G~NatIfAYGQTGSGKTyTM 119 (1106)
.+|+.+.+. ..+...+ ..++..+. .+....|+-||++|+|||+.+
T Consensus 9 ~~~~~~ig~----~~~~~~l-~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 9 KTLDEYIGQ----ERLKQKL-RVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CSTTTCCSC----HHHHHHH-HHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred ccHHHhhCH----HHHHHHH-HHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 367777664 3333332 22333322 234567889999999999875
No 121
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=43.96 E-value=5.1 Score=43.24 Aligned_cols=42 Identities=19% Similarity=0.136 Sum_probs=25.2
Q ss_pred ecceecCCCCChHHHHHHHHHHHHHHhhcCC-CcceeeeccCCCCCccccC
Q 001290 71 TFDRVFGCECPTRQVYEEAAKEVTLSVVNGI-NSTFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 71 ~FD~VF~~~atQeeVYe~vv~plV~svL~G~-NatIfAYGQTGSGKTyTM~ 120 (1106)
+||.+.+ ++.+...+ ... +-.|. ...++-||++|+|||+++.
T Consensus 24 ~~~~ivg----~~~~~~~l-~~~---l~~~~~~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 24 TIDECIL----PAFDKETF-KSI---TSKGKIPHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp STTTSCC----CHHHHHHH-HHH---HHTTCCCSEEEECSSTTSSHHHHHH
T ss_pred CHHHHhC----cHHHHHHH-HHH---HHcCCCCeEEEeeCcCCCCHHHHHH
Confidence 4666665 44443332 222 22343 3567888999999999863
No 122
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=43.32 E-value=6.4 Score=42.27 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=15.6
Q ss_pred CcceeeeccCCCCCccccC
Q 001290 102 NSTFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 102 NatIfAYGQTGSGKTyTM~ 120 (1106)
...+.-.|+||||||+++.
T Consensus 25 g~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp SEEEEEECSTTCSHHHHHH
T ss_pred CCEEEEECCCCccHHHHHH
Confidence 4467788999999999873
No 123
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=42.80 E-value=8.1 Score=42.62 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=18.8
Q ss_pred HHHHhhcCCCcceeeeccCCCCCcccc
Q 001290 93 VTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM 119 (1106)
.+..++.|.+ ++..++||||||.+.
T Consensus 67 ai~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 67 AIKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCCchHHH
Confidence 3445678877 677789999999764
No 124
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=42.58 E-value=7.3 Score=41.25 Aligned_cols=42 Identities=26% Similarity=0.258 Sum_probs=25.8
Q ss_pred ecceecCCCCChHHHHHHHHHHHHHHhhcCCCcceeeeccCCCCCccccC
Q 001290 71 TFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 71 ~FD~VF~~~atQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1106)
.|+.+.+ ++.+.+. +...+-.|....++-||+.|+|||+++.
T Consensus 15 ~~~~~~g----~~~~~~~----l~~~l~~~~~~~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 15 TLDEVVG----QDEVIQR----LKGYVERKNIPHLLFSGPPGTGKTATAI 56 (319)
T ss_dssp SGGGSCS----CHHHHHH----HHTTTTTTCCCCEEEESSSSSSHHHHHH
T ss_pred CHHHHhC----CHHHHHH----HHHHHhCCCCCeEEEECcCCcCHHHHHH
Confidence 4565554 4444433 2223334554458999999999998763
No 125
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=42.36 E-value=7.4 Score=42.41 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=16.8
Q ss_pred CCCcceeeeccCCCCCcccc
Q 001290 100 GINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 100 G~NatIfAYGQTGSGKTyTM 119 (1106)
..+..|+-||.+|+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 45678999999999999864
No 126
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=42.25 E-value=5.9 Score=47.68 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=17.9
Q ss_pred HHHhhcCCCcceeeeccCCCCCccccCC
Q 001290 94 TLSVVNGINSTFFAYGQTSSGKTYTMGG 121 (1106)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1106)
|..++.... ..+-.|+.|||||+|+..
T Consensus 198 V~~al~~~~-~~lI~GPPGTGKT~ti~~ 224 (646)
T 4b3f_X 198 VLFALSQKE-LAIIHGPPGTGKTTTVVE 224 (646)
T ss_dssp HHHHHHCSS-EEEEECCTTSCHHHHHHH
T ss_pred HHHHhcCCC-ceEEECCCCCCHHHHHHH
Confidence 444554333 345679999999999643
No 127
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=41.66 E-value=6.5 Score=41.80 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=15.0
Q ss_pred cceeeeccCCCCCcccc
Q 001290 103 STFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 103 atIfAYGQTGSGKTyTM 119 (1106)
..++-+|++|+|||+++
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 57899999999999875
No 128
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=41.41 E-value=1.1e+02 Score=28.60 Aligned_cols=62 Identities=13% Similarity=0.202 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001290 358 KALVKQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLL 422 (1106)
Q Consensus 358 ~alik~Lq~Ei~rLe~eL~~l~~~~~~~~~~ll~e~~~~i~ele~~i~EL~~erd~~~~~i~~L~ 422 (1106)
..-.++|++|+..|+.|+...-. ..+++--..++.++.++.+++..+.++....+..++-.+
T Consensus 22 a~~~~~lk~E~~~lk~E~~stSa---QDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~k~~F~~~~ 83 (93)
T 3sjb_C 22 SKKYLAKVKERHELKEFNNSISA---QDNYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQAHL 83 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCT---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999998876543 345555556666777777777777777777777666543
No 129
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=41.37 E-value=93 Score=30.74 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001290 393 KEQVIEEMDRQIRELTKERDLAKSRVDNLLQS 424 (1106)
Q Consensus 393 ~~~~i~ele~~i~EL~~erd~~~~~i~~L~q~ 424 (1106)
...+++++.+++.+|+++.+.++.++..|...
T Consensus 101 ~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 101 AQIKAESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666555433
No 130
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=41.13 E-value=17 Score=39.33 Aligned_cols=31 Identities=26% Similarity=0.325 Sum_probs=21.6
Q ss_pred HHHHHHHHhhcCC-----CcceeeeccCCCCCcccc
Q 001290 89 AAKEVTLSVVNGI-----NSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 89 vv~plV~svL~G~-----NatIfAYGQTGSGKTyTM 119 (1106)
+...++..++.|+ ...|+..|++|||||+..
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 4455555666553 246888999999999764
No 131
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=40.85 E-value=7.7 Score=48.35 Aligned_cols=63 Identities=19% Similarity=0.227 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001290 358 KALVKQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDN 420 (1106)
Q Consensus 358 ~alik~Lq~Ei~rLe~eL~~l~~~~~~~~~~ll~e~~~~i~ele~~i~EL~~erd~~~~~i~~ 420 (1106)
...+.++.+++..|+.++..+...........+.....++.++.++++.+......-..+++.
T Consensus 400 p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (854)
T 1qvr_A 400 PEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRK 462 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777777776654322222334455556666666666665544433333333
No 132
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=40.81 E-value=8.6 Score=42.20 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=17.7
Q ss_pred HHHhhcCCCcceeeeccCCCCCcccc
Q 001290 94 TLSVVNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyTM 119 (1106)
+..++.|.+ ++..++||||||.+.
T Consensus 52 i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 52 IPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhcCCC--EEEECCCCcHHHHHH
Confidence 344567766 677889999999753
No 133
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=40.33 E-value=8.8 Score=40.19 Aligned_cols=23 Identities=22% Similarity=-0.090 Sum_probs=17.3
Q ss_pred HhhcCCCcceeeeccCCCCCccccC
Q 001290 96 SVVNGINSTFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 96 svL~G~NatIfAYGQTGSGKTyTM~ 120 (1106)
.++.+.+ ++.+|+||+|||+...
T Consensus 104 ~~~~~~~--~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 104 RWLVDKR--GCIVLPTGSGKTHVAM 126 (237)
T ss_dssp HHTTTSE--EEEEESSSTTHHHHHH
T ss_pred HHHhCCC--EEEEeCCCCCHHHHHH
Confidence 4556655 6677899999999853
No 134
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=39.75 E-value=6.9 Score=45.90 Aligned_cols=51 Identities=24% Similarity=0.232 Sum_probs=28.9
Q ss_pred CceecceecCCCCChHHHHHHHHHHHHH-HhhcC----CCcceeeeccCCCCCcccc
Q 001290 68 PAYTFDRVFGCECPTRQVYEEAAKEVTL-SVVNG----INSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 68 ~~F~FD~VF~~~atQeeVYe~vv~plV~-svL~G----~NatIfAYGQTGSGKTyTM 119 (1106)
..++|+.|.+.+..-+++.+.+ ..+-. ..+.+ ....|+-||++|+|||+.+
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v-~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVV-EFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHH-HHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHH-HHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 3578888887544333333221 11110 11221 2345899999999999876
No 135
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=39.60 E-value=9.9 Score=40.27 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=17.1
Q ss_pred HHhhcCCCcceeeeccCCCCCcccc
Q 001290 95 LSVVNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 95 ~svL~G~NatIfAYGQTGSGKTyTM 119 (1106)
..+++|.+ ++..++||+|||.+.
T Consensus 26 ~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 26 PLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHhcCCC--EEEEcCCCCcHHHHH
Confidence 34557765 566789999999765
No 136
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=39.46 E-value=12 Score=41.22 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=19.4
Q ss_pred HHhhcC---CCcceee--eccCCCCCccccC
Q 001290 95 LSVVNG---INSTFFA--YGQTSSGKTYTMG 120 (1106)
Q Consensus 95 ~svL~G---~NatIfA--YGQTGSGKTyTM~ 120 (1106)
..+..| ....++. ||+.|+|||+.+.
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHHH
Confidence 444555 4557888 9999999998763
No 137
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=39.31 E-value=6.8 Score=46.22 Aligned_cols=50 Identities=22% Similarity=0.212 Sum_probs=28.4
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHH-HhhcCC----CcceeeeccCCCCCcccc
Q 001290 69 AYTFDRVFGCECPTRQVYEEAAKEVTL-SVVNGI----NSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 69 ~F~FD~VF~~~atQeeVYe~vv~plV~-svL~G~----NatIfAYGQTGSGKTyTM 119 (1106)
.++||.|.+.+..-.++-+- +..+-. .++..+ ...|+-||++|+|||+.+
T Consensus 27 ~~~f~dv~G~~~~k~~l~~l-v~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEI-VEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHH-HHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHcCCcHHHHHHHHHH-HHHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 57888888754333333222 121111 122222 234899999999999876
No 138
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=39.12 E-value=7 Score=42.34 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=15.1
Q ss_pred cceeeeccCCCCCccccC
Q 001290 103 STFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 103 atIfAYGQTGSGKTyTM~ 120 (1106)
..|+-||++|+|||+.+.
T Consensus 47 ~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp CCEEEESCCCHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 357889999999998763
No 139
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=39.05 E-value=7.6 Score=41.17 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=19.8
Q ss_pred HHhhcCCC--cceeeeccCCCCCccccCC
Q 001290 95 LSVVNGIN--STFFAYGQTSSGKTYTMGG 121 (1106)
Q Consensus 95 ~svL~G~N--atIfAYGQTGSGKTyTM~G 121 (1106)
..++.|.- -+|+-||+.|+|||++...
T Consensus 49 ~~~~~~iPkkn~ili~GPPGtGKTt~a~a 77 (212)
T 1tue_A 49 KSFLKGTPKKNCLVFCGPANTGKSYFGMS 77 (212)
T ss_dssp HHHHHTCTTCSEEEEESCGGGCHHHHHHH
T ss_pred HHHHhcCCcccEEEEECCCCCCHHHHHHH
Confidence 34455532 4699999999999998644
No 140
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=38.56 E-value=1e+02 Score=31.05 Aligned_cols=57 Identities=23% Similarity=0.330 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001290 358 KALVKQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLL 422 (1106)
Q Consensus 358 ~alik~Lq~Ei~rLe~eL~~l~~~~~~~~~~ll~e~~~~i~ele~~i~EL~~erd~~~~~i~~L~ 422 (1106)
...+..|+.+++.|+.+++.+.. .++++...++.+..++..|+-+...++.++..|.
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLee--------el~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq 123 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKE--------VIALKNKNTERLNAALISGTIENNVLQQKLSDLK 123 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788888888887776653 2445555555555555555555555555544443
No 141
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=37.44 E-value=84 Score=31.06 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001290 393 KEQVIEEMDRQIRELTKERDLAKSRV 418 (1106)
Q Consensus 393 ~~~~i~ele~~i~EL~~erd~~~~~i 418 (1106)
..+.++++.+++.+|+.+...++..+
T Consensus 108 ~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 108 SAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555554444443
No 142
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=37.10 E-value=5.6 Score=45.08 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=18.8
Q ss_pred CcceeeeccCCCCCccccCCChHhH
Q 001290 102 NSTFFAYGQTSSGKTYTMGGITEYA 126 (1106)
Q Consensus 102 NatIfAYGQTGSGKTyTM~GIi~ra 126 (1106)
+.-++.+|.||||||.++..+++.+
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~ 77 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTG 77 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHH
Confidence 5667899999999999865444433
No 143
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=36.95 E-value=12 Score=41.32 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=17.7
Q ss_pred HHHhhcCCCcceeeeccCCCCCcccc
Q 001290 94 TLSVVNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyTM 119 (1106)
+..++.|.| ++..++||||||.+.
T Consensus 46 i~~i~~~~~--~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 46 IPIIKEKRD--LMACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHccCCC--EEEEcCCCCHHHHHH
Confidence 344567877 467789999999753
No 144
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=36.73 E-value=17 Score=33.27 Aligned_cols=45 Identities=31% Similarity=0.351 Sum_probs=37.1
Q ss_pred HhhcCHHHHHHHHHHhccCCCCcchhhhhhhhhcCCCCccchhHHHHHHHHHHhhccCCCCccc
Q 001290 1011 HQKFSRKEREELYKKWGIALNTKQRSLQLARRIWSSTKDMNHIKESASLVAKLIDFVQPGQAPK 1074 (1106)
Q Consensus 1011 ~~kl~~~ere~ly~kwgi~l~~k~rrlql~~~lwt~~~d~~hv~esa~~vaklv~f~e~~~~~k 1074 (1106)
+..|+.||.+.|..||+|.. -||=.-+++|| ||+.+|+ .+|+..|
T Consensus 20 H~vLs~eE~~~ll~~y~i~~------~qLP~I~~~DP------------va~~~g~-k~GdVvk 64 (84)
T 4ayb_H 20 HEVLSIDEAYKILKELGIRP------EQLPWIRASDP------------VARSINA-KPGDIIR 64 (84)
T ss_dssp EEECCHHHHHHHHHHHTCCG------GGSCCEESSSH------------HHHHHTC-CTTCEEE
T ss_pred eEECCHHHHHHHHHHhcCCH------hHCCeecccCH------------hHHhhCC-CCCCEEE
Confidence 35799999999999999952 38988899998 9999996 5577654
No 145
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=35.85 E-value=82 Score=28.15 Aligned_cols=25 Identities=28% Similarity=0.326 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001290 390 LKEKEQVIEEMDRQIRELTKERDLA 414 (1106)
Q Consensus 390 l~e~~~~i~ele~~i~EL~~erd~~ 414 (1106)
+++++.++.+.+.+|++|+.+.|..
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555555555444
No 146
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=35.76 E-value=13 Score=39.48 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=16.8
Q ss_pred cCCCcceeeeccCCCCCccccC
Q 001290 99 NGINSTFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~ 120 (1106)
.|.-..++-||+.|+|||+++.
T Consensus 39 ~~~~~~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 39 DGNMPHMIISGMPGIGKTTSVH 60 (323)
T ss_dssp SCCCCCEEEECSTTSSHHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHHH
Confidence 4443348999999999998763
No 147
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=35.69 E-value=13 Score=43.16 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=18.7
Q ss_pred HHhhcCCCcceeeeccCCCCCcccc
Q 001290 95 LSVVNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 95 ~svL~G~NatIfAYGQTGSGKTyTM 119 (1106)
..++.|.+..++..++||||||.+.
T Consensus 151 ~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 151 PLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp HHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred HHHHcCCCCCEEEECCCCccHHHHH
Confidence 3456774456788899999999873
No 148
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=35.38 E-value=13 Score=41.43 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=18.0
Q ss_pred HHHHhhcCCCcceeeeccCCCCCccc
Q 001290 93 VTLSVVNGINSTFFAYGQTSSGKTYT 118 (1106)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyT 118 (1106)
++..++.|.| ++..++||||||..
T Consensus 29 ~i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 29 WAKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHHhcCCC--EEEEeCCCCCHHHH
Confidence 3445567875 57888999999983
No 149
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=35.06 E-value=8.9 Score=46.04 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=18.1
Q ss_pred CcceeeeccCCCCCccccCCChH
Q 001290 102 NSTFFAYGQTSSGKTYTMGGITE 124 (1106)
Q Consensus 102 NatIfAYGQTGSGKTyTM~GIi~ 124 (1106)
+..++..|++|||||+|+..+++
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~ 186 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLA 186 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHH
Confidence 35678899999999999865443
No 150
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=35.02 E-value=12 Score=38.13 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=20.9
Q ss_pred HHHHHhhc-CC--CcceeeeccCCCCCccccC
Q 001290 92 EVTLSVVN-GI--NSTFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 92 plV~svL~-G~--NatIfAYGQTGSGKTyTM~ 120 (1106)
+-++.++. |+ ...+.-+|++|+|||+.+.
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHH
Confidence 34667774 33 3467789999999998763
No 151
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=34.74 E-value=7.7 Score=43.78 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=16.2
Q ss_pred CCcceeeeccCCCCCccccC
Q 001290 101 INSTFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 101 ~NatIfAYGQTGSGKTyTM~ 120 (1106)
-...+...|+||||||+++.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~ 154 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIA 154 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 34567889999999999873
No 152
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=34.63 E-value=1.2e+02 Score=27.13 Aligned_cols=39 Identities=15% Similarity=0.275 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001290 387 FTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSI 425 (1106)
Q Consensus 387 ~~ll~e~~~~i~ele~~i~EL~~erd~~~~~i~~L~q~~ 425 (1106)
..+|...-.-|..|..+..++..+.+.++.+.+.|.+.+
T Consensus 39 ~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 39 LSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457787778888888888888888888888887776654
No 153
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=34.02 E-value=22 Score=37.34 Aligned_cols=33 Identities=24% Similarity=0.245 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhhcCCC-----cceeeeccCCCCCcccc
Q 001290 87 EEAAKEVTLSVVNGIN-----STFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 87 e~vv~plV~svL~G~N-----atIfAYGQTGSGKTyTM 119 (1106)
+.+...++..++.|+. ..|+..|+.|||||+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 12 KHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHH
T ss_pred HHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHH
Confidence 3333444444444432 35788999999999753
No 154
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=33.96 E-value=14 Score=40.21 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=18.4
Q ss_pred HHHHhhcCCCcceeeeccCCCCCcccc
Q 001290 93 VTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM 119 (1106)
++..++.|.+ ++..++||+|||.+.
T Consensus 38 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 38 CIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 3455677866 566789999999764
No 155
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=33.50 E-value=1.1e+02 Score=39.36 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.1
Q ss_pred hcCCCcceeeeccCCCCCcccc
Q 001290 98 VNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 98 L~G~NatIfAYGQTGSGKTyTM 119 (1106)
-.+.|-||+.-|.+|||||.+.
T Consensus 152 ~~~~~QsIiisGESGAGKTe~~ 173 (1080)
T 2dfs_A 152 RDERNQSIIVSGESGAGKTVSA 173 (1080)
T ss_dssp HHTCCEEEEEECSTTSSHHHHH
T ss_pred hcCCCcEEEEcCCCCCCccchH
Confidence 3799999999999999999885
No 156
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=33.22 E-value=1.2e+02 Score=29.47 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001290 396 VIEEMDRQIRELTKERDLAKSRVDNLLQSIGE 427 (1106)
Q Consensus 396 ~i~ele~~i~EL~~erd~~~~~i~~L~q~~~~ 427 (1106)
++++++.+|+.|..+++.+...++.|......
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~ 103 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQV 103 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Confidence 46677777777777777777777776655443
No 157
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=33.15 E-value=14 Score=42.91 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=19.5
Q ss_pred HHHHhhcCCCcceeeeccCCCCCccc
Q 001290 93 VTLSVVNGINSTFFAYGQTSSGKTYT 118 (1106)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyT 118 (1106)
++..++.|.+..+++.++||||||.+
T Consensus 102 ~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 102 TIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCCCccHH
Confidence 44556655555678889999999976
No 158
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=33.12 E-value=13 Score=41.14 Aligned_cols=18 Identities=39% Similarity=0.490 Sum_probs=15.3
Q ss_pred CcceeeeccCCCCCcccc
Q 001290 102 NSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 102 NatIfAYGQTGSGKTyTM 119 (1106)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456888999999999865
No 159
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=33.08 E-value=19 Score=36.47 Aligned_cols=30 Identities=17% Similarity=0.024 Sum_probs=19.1
Q ss_pred HHHHHHHhhc--CCCcceeeeccCCCCCcccc
Q 001290 90 AKEVTLSVVN--GINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 90 v~plV~svL~--G~NatIfAYGQTGSGKTyTM 119 (1106)
+..++..+.. +-.-.|.-.|++|||||+.+
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 3444444442 33345666799999999876
No 160
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=33.06 E-value=22 Score=38.64 Aligned_cols=41 Identities=29% Similarity=0.441 Sum_probs=25.2
Q ss_pred ecceecCCCCChHHHHHHHHHHHHHHhhcC-CCcceeeeccCCCCCcccc
Q 001290 71 TFDRVFGCECPTRQVYEEAAKEVTLSVVNG-INSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 71 ~FD~VF~~~atQeeVYe~vv~plV~svL~G-~NatIfAYGQTGSGKTyTM 119 (1106)
.|+.+.+ ++.+.+.+.. .+-.| ....++-||+.|+|||+++
T Consensus 14 ~~~~~vg----~~~~~~~L~~----~l~~~~~~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 14 TFADVVG----QEHVLTALAN----GLSLGRIHHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp STTTSCS----CHHHHHHHHH----HHHHTCCCSEEEEESCTTSSHHHHH
T ss_pred chhhccC----cHHHHHHHHH----HHHhCCCCeEEEEECCCCCCHHHHH
Confidence 3555554 5555544322 22233 3456889999999999886
No 161
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=32.69 E-value=12 Score=40.49 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=14.4
Q ss_pred eeeeccCCCCCccccC
Q 001290 105 FFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 105 IfAYGQTGSGKTyTM~ 120 (1106)
++-||+.|+|||+++.
T Consensus 39 ~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCM 54 (354)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 8889999999999864
No 162
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=32.35 E-value=20 Score=42.98 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=18.7
Q ss_pred HHHHhhcCCCcceeeeccCCCCCcccc
Q 001290 93 VTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM 119 (1106)
++..++.|.+ +++.++||+|||.+.
T Consensus 52 ~i~~il~g~d--~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 52 TINVTMAGKE--VFLVMPTGGGKSLCY 76 (591)
T ss_dssp HHHHHHTTCC--EEEECCTTSCTTHHH
T ss_pred HHHHHHcCCC--EEEEECCCChHHHHH
Confidence 3445577877 677889999999753
No 163
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=32.19 E-value=15 Score=42.01 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=17.9
Q ss_pred HHHhhcCCCcceeeeccCCCCCcccc
Q 001290 94 TLSVVNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyTM 119 (1106)
+..++.|.| ++..++||||||.+.
T Consensus 16 i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 16 AQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHcCCC--EEEEcCCCChHHHHH
Confidence 445567876 567789999999764
No 164
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=31.98 E-value=2.7e+02 Score=25.66 Aligned_cols=66 Identities=14% Similarity=0.310 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCcchh-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001290 361 VKQLQKELARLENEMKNLQSTPKKCDF-----------TLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSIG 426 (1106)
Q Consensus 361 ik~Lq~Ei~rLe~eL~~l~~~~~~~~~-----------~ll~e~~~~i~ele~~i~EL~~erd~~~~~i~~L~q~~~ 426 (1106)
...++.++..++..+..+......|.. ..+.....++..+..++.+|..+...+..++..|...+.
T Consensus 26 ~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 26 IGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666543333322 133444555556666666666666665555555554443
No 165
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=31.98 E-value=8.6 Score=40.81 Aligned_cols=22 Identities=14% Similarity=0.058 Sum_probs=15.3
Q ss_pred hhcCCCcceeeeccCCCCCccccC
Q 001290 97 VVNGINSTFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 97 vL~G~NatIfAYGQTGSGKTyTM~ 120 (1106)
++.|.++ +..++||+|||.+..
T Consensus 125 ~l~~~~~--ll~~~tGsGKT~~~~ 146 (282)
T 1rif_A 125 GLVNRRR--ILNLPTSAGRSLIQA 146 (282)
T ss_dssp HHHHSEE--EECCCTTSCHHHHHH
T ss_pred HHhcCCe--EEEcCCCCCcHHHHH
Confidence 3445443 348999999998863
No 166
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=31.95 E-value=1.6e+02 Score=30.80 Aligned_cols=50 Identities=22% Similarity=0.289 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001290 357 DKALVKQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNL 421 (1106)
Q Consensus 357 d~alik~Lq~Ei~rLe~eL~~l~~~~~~~~~~ll~e~~~~i~ele~~i~EL~~erd~~~~~i~~L 421 (1106)
+..+|..|+.|+..|..+|. .++..|+.+.+++..++.+....+.++.+.
T Consensus 18 ad~LV~~L~~En~~L~~ql~---------------~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~ 67 (190)
T 4emc_A 18 ADLLVANLVNENFVLSEKLD---------------TKATEIKQLQKQIDSLNAQVKELKTQTSQQ 67 (190)
T ss_dssp --CHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 34578888888888888765 344556666666666666665555554433
No 167
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=31.87 E-value=39 Score=41.03 Aligned_cols=79 Identities=14% Similarity=0.225 Sum_probs=49.5
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhhcCCCcceeeeccCCCCCccccCCChH-------------hHHHHHHHhhh
Q 001290 69 AYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGITE-------------YAIQDIYDYID 135 (1106)
Q Consensus 69 ~F~FD~VF~~~atQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi~-------------rai~dLF~~I~ 135 (1106)
.|..-.=|.|...|..-+... +..+-.|... ....|.|||||||||..++. ..+..++..+.
T Consensus 4 ~~~~~~~~~p~~~Q~~~i~~l----~~~~~~~~~~-~~l~g~~gs~k~~~~a~~~~~~~~~~lvv~~~~~~A~~l~~el~ 78 (661)
T 2d7d_A 4 RFELVSKYQPQGDQPKAIEKL----VKGIQEGKKH-QTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFK 78 (661)
T ss_dssp CCCCCCSCCCCTTHHHHHHHH----HHHHHTTCSE-EEEEECTTSCHHHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHH
T ss_pred cceeecCCCCCCCCHHHHHHH----HHHHhcCCCc-EEEECcCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHH
Confidence 466666788999998877654 4444556422 45679999999999964332 23455555554
Q ss_pred cc-ccceEEEEeeEEEEe
Q 001290 136 TH-QEREFVLKFSAMEIY 152 (1106)
Q Consensus 136 ~~-~~~~f~V~vS~lEIY 152 (1106)
.. ++..+....||+.-|
T Consensus 79 ~~~~~~~v~~fps~yd~~ 96 (661)
T 2d7d_A 79 EFFPNNAVEYFVSYYDYY 96 (661)
T ss_dssp HHCTTSEEEEECCCEEEE
T ss_pred HHcCCCcEEEcccccccc
Confidence 43 233556667765444
No 168
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=31.39 E-value=14 Score=36.90 Aligned_cols=28 Identities=21% Similarity=0.131 Sum_probs=19.8
Q ss_pred HHHHhhc-CCC--cceeeeccCCCCCccccC
Q 001290 93 VTLSVVN-GIN--STFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 93 lV~svL~-G~N--atIfAYGQTGSGKTyTM~ 120 (1106)
.++.++. |+. ..+.-+|++|+|||+.+.
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHH
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHH
Confidence 4566664 442 356678999999998864
No 169
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=31.29 E-value=15 Score=43.04 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.6
Q ss_pred CcceeeeccCCCCCcccc
Q 001290 102 NSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 102 NatIfAYGQTGSGKTyTM 119 (1106)
...++-||++|+|||+++
T Consensus 77 ~~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 357889999999999886
No 170
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=31.13 E-value=12 Score=45.10 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=16.0
Q ss_pred cceeeeccCCCCCccccCCC
Q 001290 103 STFFAYGQTSSGKTYTMGGI 122 (1106)
Q Consensus 103 atIfAYGQTGSGKTyTM~GI 122 (1106)
..++..|+.|||||+|+..+
T Consensus 196 ~~~li~GppGTGKT~~~~~~ 215 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATI 215 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHH
Confidence 35678899999999997544
No 171
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=30.69 E-value=2.6e+02 Score=26.79 Aligned_cols=62 Identities=15% Similarity=0.234 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001290 362 KQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSIGE 427 (1106)
Q Consensus 362 k~Lq~Ei~rLe~eL~~l~~~~~~~~~~ll~e~~~~i~ele~~i~EL~~erd~~~~~i~~L~q~~~~ 427 (1106)
+.|+..+.+|..++...+.... ....+....+..|++++..|+..++.++..+.+|.|.-.+
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~----~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDD 67 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLE----HQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDD 67 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 4455555555555554442100 1223444556777777777777777777777777665443
No 172
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=30.68 E-value=14 Score=39.48 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=16.7
Q ss_pred HHhhcCCCcceeeeccCCCCCcccc
Q 001290 95 LSVVNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 95 ~svL~G~NatIfAYGQTGSGKTyTM 119 (1106)
..++.|.. .++..++||||||.+.
T Consensus 38 ~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 38 PLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHhCCCC-CEEEECCCCChHHHHH
Confidence 34456632 3567799999999874
No 173
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=30.62 E-value=64 Score=37.89 Aligned_cols=16 Identities=6% Similarity=0.335 Sum_probs=7.7
Q ss_pred EEecCCCCcchHHHHH
Q 001290 319 ICTMSPARSHVEQSRN 334 (1106)
Q Consensus 319 I~tISPs~~~~eETLs 334 (1106)
+||-.+........+.
T Consensus 391 ~cc~~~~~~~~~~~~~ 406 (597)
T 3oja_B 391 LCCKESDKPYLDRLLQ 406 (597)
T ss_dssp EEEECCSSHHHHHHHH
T ss_pred ccccCCCccchhHHHH
Confidence 5555555544443333
No 174
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=30.52 E-value=15 Score=36.63 Aligned_cols=29 Identities=28% Similarity=0.243 Sum_probs=21.6
Q ss_pred HHHHHhhc-CCC--cceeeeccCCCCCccccC
Q 001290 92 EVTLSVVN-GIN--STFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 92 plV~svL~-G~N--atIfAYGQTGSGKTyTM~ 120 (1106)
+-++.++. |+. ..+..+|.+|+|||..+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHH
Confidence 34667775 564 467889999999998764
No 175
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=30.20 E-value=10 Score=41.21 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=17.8
Q ss_pred HHHHhhcCCCcceeeeccCCCCCccc
Q 001290 93 VTLSVVNGINSTFFAYGQTSSGKTYT 118 (1106)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyT 118 (1106)
++..++.|.+ ++..++||||||.+
T Consensus 51 ~i~~i~~~~~--~lv~~~TGsGKT~~ 74 (394)
T 1fuu_A 51 AIMPIIEGHD--VLAQAQSGTGKTGT 74 (394)
T ss_dssp HHHHHHHTCC--EEECCCSSHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHH
Confidence 3445567766 56778999999976
No 176
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=30.18 E-value=17 Score=41.37 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=17.5
Q ss_pred HHHhhcCCCcceeeeccCCCCCcccc
Q 001290 94 TLSVVNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyTM 119 (1106)
+..++.|.| ++..++||||||.+.
T Consensus 13 i~~~~~~~~--~l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 13 ALPAKKGKN--TIICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCChHHHHH
Confidence 344567876 566789999999763
No 177
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=30.01 E-value=19 Score=40.74 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=17.7
Q ss_pred HHHhhcCCCcceeeeccCCCCCccc
Q 001290 94 TLSVVNGINSTFFAYGQTSSGKTYT 118 (1106)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyT 118 (1106)
+..++.|.+ +++.++||||||..
T Consensus 87 i~~i~~g~d--~i~~a~TGsGKT~a 109 (434)
T 2db3_A 87 IPVISSGRD--LMACAQTGSGKTAA 109 (434)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHhcCCC--EEEECCCCCCchHH
Confidence 445578876 57778999999975
No 178
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=29.66 E-value=16 Score=40.50 Aligned_cols=18 Identities=39% Similarity=0.503 Sum_probs=15.6
Q ss_pred CcceeeeccCCCCCcccc
Q 001290 102 NSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 102 NatIfAYGQTGSGKTyTM 119 (1106)
...|+-||++|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 456899999999999875
No 179
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=29.63 E-value=44 Score=39.68 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 001290 389 LLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSIGEE 428 (1106)
Q Consensus 389 ll~e~~~~i~ele~~i~EL~~erd~~~~~i~~L~q~~~~~ 428 (1106)
+..+++.+|+-|+++|.....++..+|+.|++++..|..-
T Consensus 111 ~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRL 150 (562)
T 3ghg_A 111 VSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRL 150 (562)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346666777777777766677777777777777666553
No 180
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=28.64 E-value=21 Score=40.95 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=24.8
Q ss_pred CCChHHHHHHHHHHHHHHhhcCCCcceeeeccCCCCCccccC
Q 001290 79 ECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 79 ~atQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1106)
+..|.+++..+.. .+-.| ...++..|..|||||+++.
T Consensus 27 n~~Q~~av~~~~~----~i~~~-~~~~li~G~aGTGKT~ll~ 63 (459)
T 3upu_A 27 TEGQKNAFNIVMK----AIKEK-KHHVTINGPAGTGATTLTK 63 (459)
T ss_dssp CHHHHHHHHHHHH----HHHSS-SCEEEEECCTTSCHHHHHH
T ss_pred CHHHHHHHHHHHH----HHhcC-CCEEEEEeCCCCCHHHHHH
Confidence 4467776665533 22233 3478899999999998763
No 181
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=28.54 E-value=22 Score=35.87 Aligned_cols=18 Identities=28% Similarity=0.156 Sum_probs=14.6
Q ss_pred CcceeeeccCCCCCcccc
Q 001290 102 NSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 102 NatIfAYGQTGSGKTyTM 119 (1106)
...|...|.+|||||+.+
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346777899999999875
No 182
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=27.81 E-value=18 Score=40.95 Aligned_cols=23 Identities=22% Similarity=-0.080 Sum_probs=17.1
Q ss_pred HHhhcCCCcceeeeccCCCCCcccc
Q 001290 95 LSVVNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 95 ~svL~G~NatIfAYGQTGSGKTyTM 119 (1106)
..++.|.+ ++..|+||+|||.+.
T Consensus 103 ~~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 103 ERWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHHhcCC--EEEEeCCCCCHHHHH
Confidence 34556654 667789999999985
No 183
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=27.67 E-value=2.2e+02 Score=25.85 Aligned_cols=42 Identities=21% Similarity=0.327 Sum_probs=27.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001290 385 CDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSIG 426 (1106)
Q Consensus 385 ~~~~ll~e~~~~i~ele~~i~EL~~erd~~~~~i~~L~q~~~ 426 (1106)
....+|...-.-|..|+.+...+..+.+.++.+.+.|.+.+.
T Consensus 42 sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 42 PKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334577776677777777777777766666666666665543
No 184
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=27.59 E-value=18 Score=39.74 Aligned_cols=25 Identities=16% Similarity=0.025 Sum_probs=18.2
Q ss_pred HHHHhhcCCCcceeeeccCCCCCccccC
Q 001290 93 VTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1106)
.+..++.| .++..++||+|||.++.
T Consensus 17 ~i~~~~~~---~~ll~~~tG~GKT~~~~ 41 (494)
T 1wp9_A 17 IYAKCKET---NCLIVLPTGLGKTLIAM 41 (494)
T ss_dssp HHHHGGGS---CEEEECCTTSCHHHHHH
T ss_pred HHHHHhhC---CEEEEcCCCCCHHHHHH
Confidence 34556777 45567899999998763
No 185
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=27.34 E-value=19 Score=42.95 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=18.6
Q ss_pred HHHHhhcCCCcceeeeccCCCCCcccc
Q 001290 93 VTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM 119 (1106)
++..++.|.| ++..++||+|||.+.
T Consensus 15 ~i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 15 VAQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 3445567776 567789999999875
No 186
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=27.30 E-value=19 Score=43.83 Aligned_cols=46 Identities=17% Similarity=0.245 Sum_probs=29.3
Q ss_pred ecceecCCCCChHHHHHHHHHHHHHHhhcCCCcceeeeccCCCCCccccCCChH
Q 001290 71 TFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGITE 124 (1106)
Q Consensus 71 ~FD~VF~~~atQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi~ 124 (1106)
.||.|.+ ++..... ++..+.......++-||++|+|||+.+.++..
T Consensus 184 ~~d~~iG----r~~~i~~----l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 184 GIDPLIG----REKELER----AIQVLCRRRKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp CSCCCCS----CHHHHHH----HHHHHTSSSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCccC----CHHHHHH----HHHHHhccCCCCeEEEcCCCCCHHHHHHHHHH
Confidence 4666665 3333333 44444445556678899999999998765543
No 187
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=27.20 E-value=21 Score=37.01 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=17.3
Q ss_pred HHHHhhcCCCcceeeeccCCCCCcccc
Q 001290 93 VTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM 119 (1106)
+++.+-.|-- +.-.|+.|||||+.+
T Consensus 15 ~l~~i~~Ge~--~~liG~nGsGKSTLl 39 (208)
T 3b85_A 15 YVDAIDTNTI--VFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHCSE--EEEECCTTSSTTHHH
T ss_pred HHHhccCCCE--EEEECCCCCCHHHHH
Confidence 4444445544 445799999999886
No 188
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=27.17 E-value=22 Score=43.52 Aligned_cols=45 Identities=20% Similarity=0.271 Sum_probs=28.5
Q ss_pred eecceecCCCCChHHHHHHHHHHHHHHhhcCCCcceeeeccCCCCCccccCCC
Q 001290 70 YTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGI 122 (1106)
Q Consensus 70 F~FD~VF~~~atQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~GI 122 (1106)
-.||.|.+ ++..... ++..+..+....++-||++|+|||....++
T Consensus 177 ~~ld~iiG----~~~~i~~----l~~~l~~~~~~~vLL~G~pGtGKT~la~~l 221 (758)
T 3pxi_A 177 DSLDPVIG----RSKEIQR----VIEVLSRRTKNNPVLIGEPGVGKTAIAEGL 221 (758)
T ss_dssp SCSCCCCC----CHHHHHH----HHHHHHCSSSCEEEEESCTTTTTHHHHHHH
T ss_pred CCCCCccC----chHHHHH----HHHHHhCCCCCCeEEECCCCCCHHHHHHHH
Confidence 35666666 3333333 333344455566889999999999876543
No 189
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=26.90 E-value=13 Score=36.81 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=14.0
Q ss_pred ceeeeccCCCCCccccC
Q 001290 104 TFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 104 tIfAYGQTGSGKTyTM~ 120 (1106)
.+...|++|||||+.+.
T Consensus 11 i~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45678999999999873
No 190
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=26.84 E-value=25 Score=43.75 Aligned_cols=52 Identities=21% Similarity=0.317 Sum_probs=37.4
Q ss_pred CceecceecCCCCChHHHHHHHHHHHHH-HhhcC----CCcceeeeccCCCCCcccc
Q 001290 68 PAYTFDRVFGCECPTRQVYEEAAKEVTL-SVVNG----INSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 68 ~~F~FD~VF~~~atQeeVYe~vv~plV~-svL~G----~NatIfAYGQTGSGKTyTM 119 (1106)
..++||.|.+.+..-+.+.+.+..|+.. .++.. ....|+-||++|+|||+.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 4588999999887777787777665543 22322 2346899999999999865
No 191
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=26.61 E-value=19 Score=36.15 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=19.9
Q ss_pred HHHHHhhc-CCC--cceeeeccCCCCCcccc
Q 001290 92 EVTLSVVN-GIN--STFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 92 plV~svL~-G~N--atIfAYGQTGSGKTyTM 119 (1106)
+-++.++. |+. ..+.-+|++|||||..+
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 34566663 543 35777899999999876
No 192
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=26.33 E-value=22 Score=41.86 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=18.6
Q ss_pred HHHHhhcCCCcceeeeccCCCCCccc
Q 001290 93 VTLSVVNGINSTFFAYGQTSSGKTYT 118 (1106)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyT 118 (1106)
++..++.|-+.-+++.++||||||.+
T Consensus 51 ~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 51 TIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 34455655445678888999999976
No 193
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=26.28 E-value=15 Score=34.76 Aligned_cols=16 Identities=25% Similarity=0.299 Sum_probs=13.2
Q ss_pred ceeeeccCCCCCcccc
Q 001290 104 TFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 104 tIfAYGQTGSGKTyTM 119 (1106)
.|+-.|.+|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999853
No 194
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=26.11 E-value=14 Score=41.34 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=15.5
Q ss_pred CcceeeeccCCCCCccccCC
Q 001290 102 NSTFFAYGQTSSGKTYTMGG 121 (1106)
Q Consensus 102 NatIfAYGQTGSGKTyTM~G 121 (1106)
|.-++..|+||||||+++.-
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~ 54 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKM 54 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHH
Confidence 44467789999999998743
No 195
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=26.07 E-value=29 Score=38.05 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=13.9
Q ss_pred ceeeeccCCCCCcccc
Q 001290 104 TFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 104 tIfAYGQTGSGKTyTM 119 (1106)
.+.-.|++|||||+|+
T Consensus 102 vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5667899999999987
No 196
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=25.80 E-value=22 Score=41.87 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=18.7
Q ss_pred HHHHhhcCCCcceeeeccCCCCCccccC
Q 001290 93 VTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1106)
++..+..|. .|+-||++|+|||+.+.
T Consensus 34 l~~al~~~~--~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 34 CLLAALSGE--SVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp HHHHHHHTC--EEEEECCSSSSHHHHHH
T ss_pred HHHHHhcCC--eeEeecCchHHHHHHHH
Confidence 333445554 57889999999998763
No 197
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=25.79 E-value=11 Score=39.72 Aligned_cols=24 Identities=21% Similarity=0.047 Sum_probs=18.3
Q ss_pred CcceeeeccCCCCCccccCCChHh
Q 001290 102 NSTFFAYGQTSSGKTYTMGGITEY 125 (1106)
Q Consensus 102 NatIfAYGQTGSGKTyTM~GIi~r 125 (1106)
...++-||.+|+|||..+.++..+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r 35 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHR 35 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHHHHH
Confidence 346788899999999988665433
No 198
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=25.64 E-value=3.6e+02 Score=25.93 Aligned_cols=63 Identities=21% Similarity=0.231 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001290 359 ALVKQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSI 425 (1106)
Q Consensus 359 alik~Lq~Ei~rLe~eL~~l~~~~~~~~~~ll~e~~~~i~ele~~i~EL~~erd~~~~~i~~L~q~~ 425 (1106)
.-.++|+.+...|+.+|..+..... .+........++-..++.+|+.+....++.+..|.+.+
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~~r~----~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~f 68 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMKDKQ----ELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGL 68 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777766543210 12222333344555566666666655555555555544
No 199
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=25.57 E-value=21 Score=39.93 Aligned_cols=22 Identities=36% Similarity=0.311 Sum_probs=15.9
Q ss_pred HhhcCCCcceeeeccCCCCCcccc
Q 001290 96 SVVNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 96 svL~G~NatIfAYGQTGSGKTyTM 119 (1106)
.+-.|.+ +.-.|+||||||+++
T Consensus 171 ~i~~G~~--i~ivG~sGsGKSTll 192 (361)
T 2gza_A 171 AVQLERV--IVVAGETGSGKTTLM 192 (361)
T ss_dssp HHHTTCC--EEEEESSSSCHHHHH
T ss_pred HHhcCCE--EEEECCCCCCHHHHH
Confidence 3446664 445599999999986
No 200
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=25.47 E-value=2.6e+02 Score=24.57 Aligned_cols=22 Identities=14% Similarity=0.010 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q 001290 359 ALVKQLQKELARLENEMKNLQS 380 (1106)
Q Consensus 359 alik~Lq~Ei~rLe~eL~~l~~ 380 (1106)
.-.++|+.|+..|+.|+...-.
T Consensus 6 ~~~~~l~~E~~~lk~E~~stSa 27 (65)
T 3sja_C 6 KKYLAKVKERHELKEFNNSISA 27 (65)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHHHHHHHHhccch
Confidence 3457889999999988876543
No 201
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=25.08 E-value=22 Score=40.74 Aligned_cols=24 Identities=13% Similarity=0.001 Sum_probs=18.4
Q ss_pred HHHhhcCCCcceeeeccCCCCCccc
Q 001290 94 TLSVVNGINSTFFAYGQTSSGKTYT 118 (1106)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyT 118 (1106)
+..++.|.+. +++.|+||||||..
T Consensus 12 i~~~l~~~~~-~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 12 DEDIFRKKRL-TIMDLHPGAGKTKR 35 (451)
T ss_dssp CGGGGSTTCE-EEECCCTTSSCCTT
T ss_pred HHHHHhcCCe-EEEECCCCCCHhhH
Confidence 3456778664 56779999999986
No 202
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=25.07 E-value=19 Score=36.51 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=18.7
Q ss_pred HHHhhc-CC--CcceeeeccCCCCCccccC
Q 001290 94 TLSVVN-GI--NSTFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 94 V~svL~-G~--NatIfAYGQTGSGKTyTM~ 120 (1106)
++.++. |+ ...+.-+|++|+|||..+.
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~ 41 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQ 41 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHH
Confidence 355553 33 3457789999999998753
No 203
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=25.01 E-value=11 Score=38.02 Aligned_cols=21 Identities=29% Similarity=0.219 Sum_probs=16.6
Q ss_pred ceeeeccCCCCCccccCCChH
Q 001290 104 TFFAYGQTSSGKTYTMGGITE 124 (1106)
Q Consensus 104 tIfAYGQTGSGKTyTM~GIi~ 124 (1106)
.++-||+.|+|||+.+.+++.
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999998765443
No 204
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=24.76 E-value=18 Score=45.05 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=16.5
Q ss_pred cceeeeccCCCCCccccCCCh
Q 001290 103 STFFAYGQTSSGKTYTMGGIT 123 (1106)
Q Consensus 103 atIfAYGQTGSGKTyTM~GIi 123 (1106)
..++..|+.|||||+|+..++
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i 396 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIV 396 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHH
Confidence 346789999999999986543
No 205
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=24.46 E-value=18 Score=45.08 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=16.1
Q ss_pred cceeeeccCCCCCccccCCC
Q 001290 103 STFFAYGQTSSGKTYTMGGI 122 (1106)
Q Consensus 103 atIfAYGQTGSGKTyTM~GI 122 (1106)
..++..|+.|||||+|+..+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~ 391 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATI 391 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHH
Confidence 34678999999999997544
No 206
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=24.32 E-value=20 Score=42.52 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=17.8
Q ss_pred cCCCcceeeeccCCCCCccccC
Q 001290 99 NGINSTFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~ 120 (1106)
.-.++.++..|..|||||+|+.
T Consensus 19 ~~~~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 19 AAPRSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp TCCSSCEEEEECTTSCHHHHHH
T ss_pred hCCCCCEEEEECCCCCHHHHHH
Confidence 3446678899999999999974
No 207
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=24.08 E-value=15 Score=36.39 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=12.9
Q ss_pred ceeeeccCCCCCcccc
Q 001290 104 TFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 104 tIfAYGQTGSGKTyTM 119 (1106)
.|.-.|++|||||+.+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 3556799999999875
No 208
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=24.00 E-value=28 Score=41.50 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=17.2
Q ss_pred HHhhcCCCcceeeeccCCCCCcccc
Q 001290 95 LSVVNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 95 ~svL~G~NatIfAYGQTGSGKTyTM 119 (1106)
..++.|.| ++..++||||||...
T Consensus 23 ~~~l~g~~--~iv~~~TGsGKTl~~ 45 (696)
T 2ykg_A 23 LPAMKGKN--TIICAPTGCGKTFVS 45 (696)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHcCCC--EEEEcCCCchHHHHH
Confidence 34567876 567789999999853
No 209
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=23.79 E-value=16 Score=42.20 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=19.6
Q ss_pred hhcCCCcceeeeccCCCCCcccc
Q 001290 97 VVNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 97 vL~G~NatIfAYGQTGSGKTyTM 119 (1106)
++.|++-.|...|++|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 58999999999999999999754
No 210
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=23.51 E-value=34 Score=38.01 Aligned_cols=17 Identities=35% Similarity=0.389 Sum_probs=14.3
Q ss_pred cceeeeccCCCCCcccc
Q 001290 103 STFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 103 atIfAYGQTGSGKTyTM 119 (1106)
..|.-.|++|+|||+|+
T Consensus 130 ~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45667899999999987
No 211
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=23.14 E-value=33 Score=42.27 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhhcCCCcceeeeccCCCCCcccc
Q 001290 84 QVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 84 eVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1106)
.||.-+-...-.-.-.+.|-||+.-|.+|||||.+.
T Consensus 76 HifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 76 HMYALANDAYRSMRQSQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 466543222222224799999999999999999875
No 212
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=23.05 E-value=38 Score=44.01 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcCCCcceeeeccCCCCCccc
Q 001290 85 VYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYT 118 (1106)
Q Consensus 85 VYe~vv~plV~svL~G~NatIfAYGQTGSGKTyT 118 (1106)
||.-+-...-.-+-.+.|-||+..|.+|||||.+
T Consensus 152 i~aia~~ay~~m~~~~~~Q~i~isGeSGaGKTe~ 185 (1184)
T 1i84_S 152 IYAIADTAYRSMLQDREDQSILCTGESGAGKTEN 185 (1184)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEECCCSTTSSTTHH
T ss_pred HhhhHHHHHHHHHhcCCCcEEEEecCCCCCccHH
No 213
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=22.87 E-value=19 Score=36.51 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=13.7
Q ss_pred cceeeeccCCCCCcccc
Q 001290 103 STFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 103 atIfAYGQTGSGKTyTM 119 (1106)
..|.-.|++|||||+++
T Consensus 9 ~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECcCCCCHHHHH
Confidence 35666799999999875
No 214
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=22.82 E-value=17 Score=36.04 Aligned_cols=15 Identities=20% Similarity=0.426 Sum_probs=12.5
Q ss_pred eeeeccCCCCCcccc
Q 001290 105 FFAYGQTSSGKTYTM 119 (1106)
Q Consensus 105 IfAYGQTGSGKTyTM 119 (1106)
|.-.|++|||||+++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999876
No 215
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=22.75 E-value=30 Score=38.29 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=16.2
Q ss_pred HhhcCCCcceeeeccCCCCCcccc
Q 001290 96 SVVNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 96 svL~G~NatIfAYGQTGSGKTyTM 119 (1106)
.+-.|.+ +.-.|+||||||+++
T Consensus 167 ~i~~g~~--v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 167 GIAIGKN--VIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHHHTCC--EEEEESTTSCHHHHH
T ss_pred hccCCCE--EEEECCCCCCHHHHH
Confidence 4445654 556799999999986
No 216
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=22.31 E-value=17 Score=36.03 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=13.0
Q ss_pred ceeeeccCCCCCcccc
Q 001290 104 TFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 104 tIfAYGQTGSGKTyTM 119 (1106)
.+.-.|++|||||+.+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999865
No 217
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=22.29 E-value=38 Score=41.08 Aligned_cols=79 Identities=15% Similarity=0.131 Sum_probs=46.6
Q ss_pred eecceecCCCCChHHHHHHHHHHHHHHhhcCCCcceeeeccCCCCCccccCCChH-------------hHHHHHHHhhhc
Q 001290 70 YTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGITE-------------YAIQDIYDYIDT 136 (1106)
Q Consensus 70 F~FD~VF~~~atQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi~-------------rai~dLF~~I~~ 136 (1106)
|.+..+ .|...|..-+... +..+-.|... ....|.||||||+||..++. ..+..|++.+..
T Consensus 2 ~~~~~~-~~~~~q~~ai~~l----~~~~~~~~~~-~~l~g~tgs~kt~~~a~~~~~~~~~~lvv~~~~~~A~ql~~el~~ 75 (664)
T 1c4o_A 2 FRYRGP-SPKGDQPKAIAGL----VEALRDGERF-VTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAEFRE 75 (664)
T ss_dssp CCCCSC-CCCTTHHHHHHHH----HHHHHTTCSE-EEEEECTTSCHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCC-CCCCCChHHHHHH----HHHHhcCCCc-EEEEcCCCcHHHHHHHHHHHHhCCCEEEEecCHHHHHHHHHHHHH
Confidence 344433 7788887776654 4444556432 35679999999999964432 234555555544
Q ss_pred c-ccceEEEEeeEEEEecccccccCCC
Q 001290 137 H-QEREFVLKFSAMEIYNESVRDLLST 162 (1106)
Q Consensus 137 ~-~~~~f~V~vS~lEIYNE~V~DLLs~ 162 (1106)
. ++..+.+..|| ||...|
T Consensus 76 ~~~~~~V~~fps~--------yd~~~p 94 (664)
T 1c4o_A 76 LFPENAVEYFISY--------YDYYQP 94 (664)
T ss_dssp HCTTSEEEECCCG--------GGTSCC
T ss_pred HCCCCeEEEcCch--------hhccCc
Confidence 3 23345555554 666655
No 218
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=22.05 E-value=16 Score=39.71 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=16.5
Q ss_pred HhhcCCCcceeeeccCCCCCcccc
Q 001290 96 SVVNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 96 svL~G~NatIfAYGQTGSGKTyTM 119 (1106)
.++.|++..|...|++|+|||..|
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 367899999999999999999765
No 219
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=22.00 E-value=23 Score=42.39 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=16.6
Q ss_pred CcceeeeccCCCCCccccCCC
Q 001290 102 NSTFFAYGQTSSGKTYTMGGI 122 (1106)
Q Consensus 102 NatIfAYGQTGSGKTyTM~GI 122 (1106)
+..++..|..|||||+|+..+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l 224 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAV 224 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHH
Confidence 356777899999999997543
No 220
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=21.70 E-value=18 Score=35.58 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=13.5
Q ss_pred ceeeeccCCCCCcccc
Q 001290 104 TFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 104 tIfAYGQTGSGKTyTM 119 (1106)
.|...|+.|||||+.+
T Consensus 11 ~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5677899999999865
No 221
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=21.65 E-value=15 Score=39.26 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=16.8
Q ss_pred cceeeeccCCCCCccccCCC
Q 001290 103 STFFAYGQTSSGKTYTMGGI 122 (1106)
Q Consensus 103 atIfAYGQTGSGKTyTM~GI 122 (1106)
..||..|..|+||||+|..+
T Consensus 7 l~I~~~~kgGvGKTt~a~~l 26 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQA 26 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHH
Confidence 45899999999999998643
No 222
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=21.62 E-value=32 Score=43.09 Aligned_cols=50 Identities=18% Similarity=0.336 Sum_probs=35.0
Q ss_pred cceeeeccCCCCCcccc-----------------------CCChHhHHHHHHHhhhccccceEEEEeeEEEEeccccccc
Q 001290 103 STFFAYGQTSSGKTYTM-----------------------GGITEYAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDL 159 (1106)
Q Consensus 103 atIfAYGQTGSGKTyTM-----------------------~GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DL 159 (1106)
..|+-||+.|+|||+.. .|-.+..++.+|........ .=||-+.|--|
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P---------~IifiDEiDsl 582 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAP---------CVLFFDELDSI 582 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCS---------EEEECSCGGGC
T ss_pred ceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCC---------ceeechhhhHH
Confidence 45889999999999875 16667889999987755432 12455666666
Q ss_pred CC
Q 001290 160 LS 161 (1106)
Q Consensus 160 Ls 161 (1106)
+.
T Consensus 583 ~~ 584 (806)
T 3cf2_A 583 AK 584 (806)
T ss_dssp C-
T ss_pred hh
Confidence 53
No 223
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=21.57 E-value=36 Score=42.33 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=20.1
Q ss_pred hcCCCcceeeeccCCCCCcccc
Q 001290 98 VNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 98 L~G~NatIfAYGQTGSGKTyTM 119 (1106)
-.+.|-||+.-|.+|||||.+.
T Consensus 168 ~~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 168 DDRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HHCCCEEEEEECSTTSSHHHHH
T ss_pred hhcCCcEEEEecCCCCcchHHH
Confidence 3799999999999999999875
No 224
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=21.51 E-value=21 Score=34.36 Aligned_cols=15 Identities=27% Similarity=0.337 Sum_probs=13.0
Q ss_pred ceeeeccCCCCCccc
Q 001290 104 TFFAYGQTSSGKTYT 118 (1106)
Q Consensus 104 tIfAYGQTGSGKTyT 118 (1106)
.|+..|..|||||+.
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 578899999999984
No 225
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=21.50 E-value=40 Score=41.19 Aligned_cols=16 Identities=38% Similarity=0.482 Sum_probs=14.5
Q ss_pred ceeeeccCCCCCcccc
Q 001290 104 TFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 104 tIfAYGQTGSGKTyTM 119 (1106)
.++-||++|+|||++.
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999875
No 226
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=21.37 E-value=37 Score=42.38 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHh-hcCCCcceeeeccCCCCCcccc
Q 001290 84 QVYEEAAKEVTLSV-VNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 84 eVYe~vv~plV~sv-L~G~NatIfAYGQTGSGKTyTM 119 (1106)
.||.-+ ...-..+ -.+.|.||+.-|.+|||||.+.
T Consensus 122 HifaiA-~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 122 HVFAIA-DKAFRDMKVLKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp CHHHHH-HHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHH-HHHHHHHHhcCCCcEEEEcCCCCCCceehH
Confidence 366543 2222233 3799999999999999999885
No 227
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=21.16 E-value=1.4e+02 Score=31.44 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=10.7
Q ss_pred CCCCcchHHHHHHHHHHHHH
Q 001290 323 SPARSHVEQSRNTLLFASCA 342 (1106)
Q Consensus 323 SPs~~~~eETLsTLrFAsrA 342 (1106)
.|.....+-+...+.|+-.+
T Consensus 114 ~~~~d~~e~i~elfd~~~~~ 133 (213)
T 1ik9_A 114 EKVENPAEVIRELIAYALDT 133 (213)
T ss_dssp EECSCHHHHHHHHHHHHHHH
T ss_pred ecCCChHHHHHHHHHHHHHH
Confidence 33333333335778887655
No 228
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=21.06 E-value=19 Score=36.45 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=13.5
Q ss_pred ceeeeccCCCCCcccc
Q 001290 104 TFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 104 tIfAYGQTGSGKTyTM 119 (1106)
.+.-.|++|||||.++
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567799999999886
No 229
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=21.02 E-value=42 Score=37.89 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=14.0
Q ss_pred ceeeeccCCCCCcccc
Q 001290 104 TFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 104 tIfAYGQTGSGKTyTM 119 (1106)
.|.-.|++|||||+|+
T Consensus 159 vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCChHHHHH
Confidence 5677899999999987
No 230
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=20.97 E-value=14 Score=37.94 Aligned_cols=23 Identities=22% Similarity=0.063 Sum_probs=17.7
Q ss_pred ceeeeccCCCCCccccCCChHhH
Q 001290 104 TFFAYGQTSSGKTYTMGGITEYA 126 (1106)
Q Consensus 104 tIfAYGQTGSGKTyTM~GIi~ra 126 (1106)
.++-||..|||||..+.++..++
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 56789999999998876654443
No 231
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=20.73 E-value=84 Score=29.42 Aligned_cols=57 Identities=12% Similarity=0.195 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001290 359 ALVKQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRV 418 (1106)
Q Consensus 359 alik~Lq~Ei~rLe~eL~~l~~~~~~~~~~ll~e~~~~i~ele~~i~EL~~erd~~~~~i 418 (1106)
.-.++|+.|+..|+.|+...-.. .+++--..++.++.++.+++..+.++....+..+
T Consensus 30 ~~~~~lk~E~~~lk~E~~stSaQ---DEFAKWAKL~Rk~DKl~~ele~l~~~L~s~ks~f 86 (94)
T 3vlc_E 30 KKYLAKVKERHELKEFNNSISAQ---DNYAKWTKNNRKLDSLDKEINNLKDEIQSENKAF 86 (94)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTT---TCHHHHHHHHHHHHHHHHHTTTHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999988765433 4454444445555555555555555444444433
No 232
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=20.68 E-value=26 Score=35.85 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=9.0
Q ss_pred ceeeeccCCCCCcccc
Q 001290 104 TFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 104 tIfAYGQTGSGKTyTM 119 (1106)
.|.-.|++|||||+++
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999886
No 233
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=20.65 E-value=39 Score=41.16 Aligned_cols=17 Identities=35% Similarity=0.466 Sum_probs=15.1
Q ss_pred cceeeeccCCCCCcccc
Q 001290 103 STFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 103 atIfAYGQTGSGKTyTM 119 (1106)
+.++-||++|+|||++.
T Consensus 489 ~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46899999999999876
No 234
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=20.39 E-value=38 Score=43.40 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHh-hcCCCcceeeeccCCCCCcccc
Q 001290 84 QVYEEAAKEVTLSV-VNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 84 eVYe~vv~plV~sv-L~G~NatIfAYGQTGSGKTyTM 119 (1106)
-||.-+ ...-..+ -.+.|-||+..|.+|||||.+.
T Consensus 154 HifaiA-~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 189 (1010)
T 1g8x_A 154 HIFAIS-DVAYRSMLDDRQNQSLLITGESGAGKTENT 189 (1010)
T ss_dssp CHHHHH-HHHHHHHHHHTCCEEEEEEESTTSSHHHHH
T ss_pred cHHHHH-HHHHHHHHhcCCCeEEEEeCCCCCCcchHH
Confidence 366533 3232333 3799999999999999999885
No 235
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=20.36 E-value=43 Score=41.63 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=18.2
Q ss_pred HhhcCCCcceeeeccCCCCCcccc
Q 001290 96 SVVNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 96 svL~G~NatIfAYGQTGSGKTyTM 119 (1106)
..-.|....++..|+||||||...
T Consensus 383 ~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 383 DMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp HHHSSSCCCCEEECCSSSSHHHHH
T ss_pred hccccCCCcEEEEcCCCCCHHHHH
Confidence 334556567888999999999864
No 236
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=20.36 E-value=32 Score=37.47 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=14.7
Q ss_pred cceeeeccCCCCCccccC
Q 001290 103 STFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 103 atIfAYGQTGSGKTyTM~ 120 (1106)
..|...|++|+|||+|+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 356667999999999974
No 237
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=20.34 E-value=35 Score=36.32 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=15.2
Q ss_pred cceeeeccCCCCCcccc
Q 001290 103 STFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 103 atIfAYGQTGSGKTyTM 119 (1106)
..++.||+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 67889999999999876
No 238
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=20.28 E-value=23 Score=34.29 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=14.3
Q ss_pred cceeeeccCCCCCcccc
Q 001290 103 STFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 103 atIfAYGQTGSGKTyTM 119 (1106)
..|+..|.+|||||+..
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35888999999999764
No 239
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=20.27 E-value=23 Score=34.60 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=13.5
Q ss_pred ceeeeccCCCCCcccc
Q 001290 104 TFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 104 tIfAYGQTGSGKTyTM 119 (1106)
.|+..|.+|||||+..
T Consensus 7 ~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVG 22 (185)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999753
No 240
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=20.27 E-value=24 Score=38.81 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=14.1
Q ss_pred cceeeeccCCCCCcccc
Q 001290 103 STFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 103 atIfAYGQTGSGKTyTM 119 (1106)
..|.-.|++|||||+++
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 35666799999999987
No 241
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=20.25 E-value=66 Score=35.07 Aligned_cols=17 Identities=35% Similarity=0.513 Sum_probs=13.8
Q ss_pred ceeeeccCCCCCccccC
Q 001290 104 TFFAYGQTSSGKTYTMG 120 (1106)
Q Consensus 104 tIfAYGQTGSGKTyTM~ 120 (1106)
.|...|.+|+|||+++.
T Consensus 100 vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEECSSCSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45567999999999874
No 242
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=20.18 E-value=1.1e+02 Score=24.58 Aligned_cols=20 Identities=55% Similarity=0.730 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 001290 360 LVKQLQKELARLENEMKNLQ 379 (1106)
Q Consensus 360 lik~Lq~Ei~rLe~eL~~l~ 379 (1106)
++.+|..|++.|+++...+.
T Consensus 4 lvaqlenevaslenenetlk 23 (49)
T 3he5_A 4 LVAQLENEVASLENENETLK 23 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHH
Confidence 56788889999888776654
No 243
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=20.12 E-value=35 Score=38.84 Aligned_cols=16 Identities=19% Similarity=0.063 Sum_probs=13.8
Q ss_pred ceeeeccCCCCCcccc
Q 001290 104 TFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 104 tIfAYGQTGSGKTyTM 119 (1106)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4678899999999984
No 244
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=20.02 E-value=40 Score=43.08 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHh-hcCCCcceeeeccCCCCCcccc
Q 001290 84 QVYEEAAKEVTLSV-VNGINSTFFAYGQTSSGKTYTM 119 (1106)
Q Consensus 84 eVYe~vv~plV~sv-L~G~NatIfAYGQTGSGKTyTM 119 (1106)
-||.-+ ...-.++ -.+.|-||+.-|.+|||||.+.
T Consensus 128 HifaiA-~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 163 (995)
T 2ycu_A 128 HVYAVT-EGAYRSMLQDREDQSILCTGESGAGKTENT 163 (995)
T ss_dssp CHHHHH-HHHHHHHHHHCCCEEEEEECBTTSSHHHHH
T ss_pred hHHHHh-HHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 366533 3222333 3799999999999999999885
Done!