BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001291
(1106 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The
Abc Transporter Complex Cbionq
Length = 275
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 105/208 (50%), Gaps = 18/208 (8%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L G++ + G +TA++G +G GK+TL G + + G I D + Y +K R
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 930 IS-GYCEQNDIHSPF-VTVYESLFYSAW-LRLPPEVNSETRKMFIEEVMELVELKPLRQS 986
S G Q+ + F +VY+ + + A ++LP + E RK ++ ++ ++ L+
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPED---EIRKR-VDNALKRTGIEHLKDK 139
Query: 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDTG 1045
+ LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ V + G
Sbjct: 140 -----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELG 194
Query: 1046 RTVVCTIHQPSIDIFEAF-DELFLMKRG 1072
T++ H IDI + D +F+MK G
Sbjct: 195 ITIIIATH--DIDIVPLYCDNVFVMKEG 220
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQ 383
+S GQKKRV ++V L +DE + GLD +I+ + + G +I
Sbjct: 144 LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE-MQKELGITIIIATH 202
Query: 384 PAPETYNLFDDIILLSDGQIVYQG-PRELVL--EFFESMGFKCPKRKGVADFLQE 435
D++ ++ +G+++ QG P+E+ E + + P+ + + L+E
Sbjct: 203 DIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEILKE 257
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With
Tnp-Adp
Length = 243
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 105/223 (47%), Gaps = 40/223 (17%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGDIRISGYP--- 921
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 16 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 71
Query: 922 KKQETFARISGYCEQNDI------------HSPFVTVYESLFYSAWLRLPPEVNSETRKM 969
R G Q+++ +P ++V E + Y+A L + SE R+
Sbjct: 72 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 130
Query: 970 FIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
+ ++VG G GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 131 Y--------------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 175
Query: 1030 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ ++MR + + + GRTV+ H+ S + D + +M++G
Sbjct: 176 SEHVIMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 215
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 7/108 (6%)
Query: 313 DTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIH- 371
+T+VG E G+SGGQ++R+ +V L DE ++ LD + I+ +N+H
Sbjct: 132 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM----RNMHK 186
Query: 372 INSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 419
I G VI + N D II++ G+IV QG + +L ES+
Sbjct: 187 ICKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLSEPESL 233
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 105/223 (47%), Gaps = 40/223 (17%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGDIRISGYP--- 921
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 69
Query: 922 KKQETFARISGYCEQNDI------------HSPFVTVYESLFYSAWLRLPPEVNSETRKM 969
R G Q+++ +P ++V E + Y+A L + SE R+
Sbjct: 70 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 128
Query: 970 FIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
+ ++VG G GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 129 Y--------------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 173
Query: 1030 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ ++MR + + + GRTV+ H+ S + D + +M++G
Sbjct: 174 SEHVIMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 213
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 7/108 (6%)
Query: 313 DTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIH- 371
+T+VG E G+SGGQ++R+ +V L DE ++ LD + I+ +N+H
Sbjct: 130 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM----RNMHK 184
Query: 372 INSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 419
I G VI + N D II++ G+IV QG + +L ES+
Sbjct: 185 ICKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLSEPESL 231
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound
State
Length = 247
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 105/223 (47%), Gaps = 40/223 (17%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGDIRISGYP--- 921
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 75
Query: 922 KKQETFARISGYCEQNDI------------HSPFVTVYESLFYSAWLRLPPEVNSETRKM 969
R G Q+++ +P ++V E + Y+A L + SE R+
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 134
Query: 970 FIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
+ ++VG G GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 135 Y--------------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 1030 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ ++MR + + + GRTV+ H+ S + D + +M++G
Sbjct: 180 SEHVIMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 219
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 7/108 (6%)
Query: 313 DTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIH- 371
+T+VG E G+SGGQ++R+ +V L DE ++ LD + I+ +N+H
Sbjct: 136 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM----RNMHK 190
Query: 372 INSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 419
I G VI + N D II++ G+IV QG + +L ES+
Sbjct: 191 ICKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 105/223 (47%), Gaps = 40/223 (17%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGDIRISGYP--- 921
D V+L+ ++ + + G + ++G +G+GK+TL ++ YI G + I G+
Sbjct: 16 DSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 71
Query: 922 KKQETFARISGYCEQNDI------------HSPFVTVYESLFYSAWLRLPPEVNSETRKM 969
R G Q+++ +P ++V E + Y+A L + SE R+
Sbjct: 72 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 130
Query: 970 FIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
+ ++VG G GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 131 Y--------------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 175
Query: 1030 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ ++MR + + + GRTV+ H+ S + D + +M++G
Sbjct: 176 SEHVIMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 215
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 7/108 (6%)
Query: 313 DTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIH- 371
+T+VG E G+SGGQ++R+ +V L DE ++ LD + I+ +N+H
Sbjct: 132 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM----RNMHK 186
Query: 372 INSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 419
I G VI + N D II++ G+IV QG + +L ES+
Sbjct: 187 ICKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLSEPESL 233
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 16/187 (8%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARI 930
+L V+ F G + ++G +G+GKTTL+ +LAG G+I + G P +
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAA---AGEIFLDGSPADPFLLRKN 82
Query: 931 SGYCEQNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVG 989
GY QN TV E + +S L + SE RK I++V+ELV L G
Sbjct: 83 VGYVFQNPSSQIIGATVEEDVAFS--LEIMGLDESEMRKR-IKKVLELV-------GLSG 132
Query: 990 LPGVN--GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1047
L + LS Q++RL IA L + + +DEP S LD + + + + + + G+
Sbjct: 133 LAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKG 192
Query: 1048 VVCTIHQ 1054
++ H+
Sbjct: 193 IILVTHE 199
Score = 37.0 bits (84), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 99/252 (39%), Gaps = 53/252 (21%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPXXXXXXXXXXXXXXXDPSLKVSGRVTYNGHNMDEFVPER 226
+LKDV+ + G++ +++G L +G + +G D F+ +
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGL----LAAAGEIFLDGSPADPFLLRK 81
Query: 227 TAAYISQH-DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFM 285
Y+ Q+ + I TV E +AF+ G+ +E+ +R K
Sbjct: 82 NVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDE-----SEMRKRIKKV------------ 124
Query: 286 KAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALAL 345
L+++GL A D + +SGGQK+R+ M+ L
Sbjct: 125 -----------------LELVGLSGLA---AADPLN--LSGGQKQRLAIASMLARDTRFL 162
Query: 346 FMDEISTGLDSST---TFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402
+DE + LD + FQ++ K N G +I L+ E + D I+ +S+G
Sbjct: 163 ALDEPVSMLDPPSQREIFQVLESLK-----NEGKGII-LVTHELEYLDDMDFILHISNGT 216
Query: 403 IVYQGPRELVLE 414
I + G E +E
Sbjct: 217 IDFCGSWEEFVE 228
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 83/160 (51%), Gaps = 15/160 (9%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIR-ISGYPKKQETFA 928
LN ++ + G AL+G SG+GK+TL+ +AG + T G I D + ++ P K
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD---- 74
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
R G QN P +TVY+++ + LR P R+ ++V E+ ++ + + L
Sbjct: 75 RNVGLVFQNWALYPHMTVYKNIAFPLELRKAP------REEIDKKVREVAKMLHIDKLLN 128
Query: 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028
P LS Q++R+ IA LV P ++ +DEP S LDA
Sbjct: 129 RYPW--QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 11/111 (9%)
Query: 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQ 383
+SGGQ++RV +V L +DE + LD+ ++ K+ + G + +
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKR-LQKELGITTVYVTH 192
Query: 384 PAPETYNLFDDIILLSDGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFL 433
E + D I ++ +G+I+ G P E+ + PK K V FL
Sbjct: 193 DQAEALAMADRIAVIREGEILQVGTPDEV---------YYKPKYKFVGGFL 234
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 105/223 (47%), Gaps = 40/223 (17%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGDIRISGYP--- 921
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 75
Query: 922 KKQETFARISGYCEQNDI------------HSPFVTVYESLFYSAWLRLPPEVNSETRKM 969
R G Q+++ +P ++V E + Y+A L + SE R+
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 134
Query: 970 FIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
+ ++VG G GLS QR+R+ IA LV NP I+ D+ TS LD
Sbjct: 135 Y--------------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDQATSALDYE 179
Query: 1030 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ ++MR + + + GRTV+ H+ S + D + +M++G
Sbjct: 180 SEHVIMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 219
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 7/108 (6%)
Query: 313 DTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIH- 371
+T+VG E G+SGGQ++R+ +V L D+ ++ LD + I+ +N+H
Sbjct: 136 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIM----RNMHK 190
Query: 372 INSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 419
I G VI + N D II++ G+IV QG + +L ES+
Sbjct: 191 ICKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter
Length = 372
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 99/219 (45%), Gaps = 22/219 (10%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
+N ++ + G L+G SG GKTT + ++AG T G I GD ++ P K +
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 86
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
+ Q+ P +TVYE++ + ++ P+ + R + E++++ EL L
Sbjct: 87 MVF----QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL------LN 136
Query: 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1048
P LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ +
Sbjct: 137 RYPA--QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT 194
Query: 1049 VCTIHQPSIDIFEAFDELFLMKRGG-------REVYVGP 1080
+ ++ D + +M RG EVY+ P
Sbjct: 195 TIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 233
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar
Transporter From Pyrococcus Horikoshii Ot3 Complexed With
Atp
Length = 373
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 99/219 (45%), Gaps = 22/219 (10%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
+N ++ + G L+G SG GKTT + ++AG T G I GD ++ P K +
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 87
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
+ Q+ P +TVYE++ + ++ P+ + R + E++++ EL L
Sbjct: 88 MVF----QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL------LN 137
Query: 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1048
P LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ +
Sbjct: 138 RYPA--QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT 195
Query: 1049 VCTIHQPSIDIFEAFDELFLMKRGG-------REVYVGP 1080
+ ++ D + +M RG EVY+ P
Sbjct: 196 TIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 234
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 87/182 (47%), Gaps = 27/182 (14%)
Query: 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQ 924
K+ ++GVS + G AL+G SG GKTT + +LAG + T G I D+ ++ P K
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY 74
Query: 925 ETFARISGYCEQNDIHSPFVTVYESLFYSAWLR------LPPEVNSETRKMFIEEVMELV 978
R G QN P +TV+E++ + R + V RK+ I+ L+
Sbjct: 75 ----REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDN---LL 127
Query: 979 ELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038
+ KP + LS Q++R+ +A LV P ++ DEP S LDA I+ +
Sbjct: 128 DRKPTQ-----------LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEI 176
Query: 1039 RN 1040
++
Sbjct: 177 KH 178
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 56/277 (20%), Positives = 99/277 (35%), Gaps = 57/277 (20%)
Query: 162 KKHLTILKDVSGI---VKPGRLTLLLGPPXXXXXXXXXXXXXXXDPSLKVSGRVTYNGHN 218
KK+ +K V G+ VK G LLGP P+ SG + ++
Sbjct: 10 KKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVL 66
Query: 219 MDEFVPE-RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKP 277
+++ P+ R + Q+ MTV E +AF R + +
Sbjct: 67 VNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRI--------------------- 105
Query: 278 DPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEM 337
S + E V+ + + D ++ D +SGGQ++RV
Sbjct: 106 -----------SKDEVEKRVVE------IARKLLIDNLL-DRKPTQLSGGQQQRVALARA 147
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397
+V L DE + LD++ I+ +++ G + + E + I +
Sbjct: 148 LVKQPKVLLFDEPLSNLDANLRM-IMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAV 206
Query: 398 LSDGQIV-YQGPRELVLEFFESMGFKCPKRKGVADFL 433
+ G++V Y P E+ + PK VA F+
Sbjct: 207 FNQGKLVQYGTPDEV---------YDSPKNMFVASFI 234
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 109/213 (51%), Gaps = 20/213 (9%)
Query: 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYITGDIRISGYPKK-- 923
K+V L+ V+ G ++G SGAGKTT M ++AG + G + D R+ K
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 924 QETFARISGYCEQNDIHSPFVTVYESL-FYSAWLRLPPEVNSETRKMFIEEVMELVELKP 982
R G Q P +T +E++ F +++ E E RK +EEV +++++
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKE---EIRKR-VEEVAKILDI-- 130
Query: 983 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR---AAAIVMRTVR 1039
L P LS Q++R+ +A LV +PS++ +DEP S LDAR +A +++ V+
Sbjct: 131 -HHVLNHFP--RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ 187
Query: 1040 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ + G T++ H P+ DIF D + ++ +G
Sbjct: 188 SRL--GVTLLVVSHDPA-DIFAIADRVGVLVKG 217
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 104/223 (46%), Gaps = 40/223 (17%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGDIRISGYP--- 921
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 69
Query: 922 KKQETFARISGYCEQNDI------------HSPFVTVYESLFYSAWLRLPPEVNSETRKM 969
R G Q+++ +P ++V E + Y+A L + SE R+
Sbjct: 70 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 128
Query: 970 FIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
+ ++VG G GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 129 Y--------------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 173
Query: 1030 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ ++MR + + + GRTV+ I + + D + +M++G
Sbjct: 174 SEHVIMRNM-HKICKGRTVI--IIAARLSTVKNADRIIVMEKG 213
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 313 DTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIH- 371
+T+VG E G+SGGQ++R+ +V L DE ++ LD + I+ +N+H
Sbjct: 130 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM----RNMHK 184
Query: 372 INSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 419
I G VI ++ T D II++ G+IV QG + +L ES+
Sbjct: 185 ICKGRTVI-IIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 231
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter
Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 104/223 (46%), Gaps = 40/223 (17%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGDIRISGYP--- 921
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 75
Query: 922 KKQETFARISGYCEQNDI------------HSPFVTVYESLFYSAWLRLPPEVNSETRKM 969
R G Q+++ +P ++V E + Y+A L + SE R+
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 134
Query: 970 FIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
+ ++VG G GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 135 Y--------------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 1030 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ ++MR + + + GRTV+ I + + D + +M++G
Sbjct: 180 SEHVIMRNM-HKICKGRTVI--IIAARLSTVKNADRIIVMEKG 219
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 313 DTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIH- 371
+T+VG E G+SGGQ++R+ +V L DE ++ LD + I+ +N+H
Sbjct: 136 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM----RNMHK 190
Query: 372 INSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 419
I G VI ++ T D II++ G+IV QG + +L ES+
Sbjct: 191 ICKGRTVI-IIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 95/201 (47%), Gaps = 10/201 (4%)
Query: 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGGYITGD-IRISGYPK 922
E+ + L V+ + G ++MG SG+GK+T+++++ + T G + D I+ +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 923 KQETFARIS--GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL 980
+ T R G+ Q P +T E++ + ++ E R+ E +++ EL
Sbjct: 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL 134
Query: 981 KPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1040
+ N LS Q++R+ IA L NP II D+PT LD++ +M+ ++
Sbjct: 135 ----EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKK 190
Query: 1041 -TVDTGRTVVCTIHQPSIDIF 1060
+ G+TVV H ++ F
Sbjct: 191 LNEEDGKTVVVVTHDINVARF 211
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 109/213 (51%), Gaps = 20/213 (9%)
Query: 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYITGDIRISGYPKK-- 923
K+V L+ V+ G ++G SGAGKTT M ++AG + G + D R+ K
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 924 QETFARISGYCEQNDIHSPFVTVYESL-FYSAWLRLPPEVNSETRKMFIEEVMELVELKP 982
R G Q P +T +E++ F +++ E E RK +EEV +++++
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKE---EIRKR-VEEVAKILDI-- 130
Query: 983 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR---AAAIVMRTVR 1039
L P LS Q++R+ +A LV +PS++ +DEP S LDAR +A +++ V+
Sbjct: 131 -HHVLNHFP--RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ 187
Query: 1040 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ + G T++ H P+ DIF D + ++ +G
Sbjct: 188 SRL--GVTLLVVSHDPA-DIFAIADRVGVLVKG 217
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 95/201 (47%), Gaps = 10/201 (4%)
Query: 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGGYITGD-IRISGYPK 922
E+ + L V+ + G ++MG SG+GK+T+++++ + T G + D I+ +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 923 KQETFARIS--GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL 980
+ T R G+ Q P +T E++ + ++ E R+ E +++ EL
Sbjct: 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL 134
Query: 981 KPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1040
+ N LS Q++R+ IA L NP II D+PT LD++ +M+ ++
Sbjct: 135 ----EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKK 190
Query: 1041 -TVDTGRTVVCTIHQPSIDIF 1060
+ G+TVV H ++ F
Sbjct: 191 LNEEDGKTVVVVTHDINVARF 211
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 96/213 (45%), Gaps = 17/213 (7%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGDIRISGYPKKQETFA 928
+ GVS R G + L+G SG+GKTT++ ++AG R T G + G R++ P ++
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---- 86
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
R G QN +TVY+++ + + P+ + R V EL+ L
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR------VRELLRFMRLESYAN 140
Query: 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRT 1047
P + LS Q++R+ +A L P ++ DEP + +D + + VR D G T
Sbjct: 141 RFP--HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVT 198
Query: 1048 VVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
V H + E D + ++ G E + P
Sbjct: 199 SVFVTHDQE-EALEVADRVLVLHEGNVEQFGTP 230
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQ 383
+SGGQ++RV + L DE +D+ ++ F + +H G + +
Sbjct: 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRREL-RTFVRQVHDEMGVTSVFVTH 204
Query: 384 PAPETYNLFDDIILLSDGQIVYQGPRELVLE 414
E + D +++L +G + G E V E
Sbjct: 205 DQEEALEVADRVLVLHEGNVEQFGTPEEVYE 235
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 93/206 (45%), Gaps = 26/206 (12%)
Query: 882 GVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGDIRISGYPKKQETFARISGYCEQND 938
G +G SG GK+TL+ ++AG +T G G+ R++ P + R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RGVGMVFQSY 84
Query: 939 IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL---KPLRQSLVGLPGVNG 995
P ++V E++ + L + R + EV++L L KP
Sbjct: 85 ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KA 133
Query: 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIH 1053
LS QR+R+ I LVA PS+ +DEP S LDA A + MR R GRT++ H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTH 192
Query: 1054 QPSIDIFEAFDELFLMKRGGREVYVG 1079
++ D++ ++ GR VG
Sbjct: 193 D-QVEAMTLADKIVVLD-AGRVAQVG 216
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTA 377
D + +SGGQ++RV G +V +DE + LD++ Q+ +H G
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM-RIEISRLHKRLGRT 186
Query: 378 VISLLQPAPETYNLFDDIILLSDGQIVYQG-PREL 411
+I + E L D I++L G++ G P EL
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 93/206 (45%), Gaps = 26/206 (12%)
Query: 882 GVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGDIRISGYPKKQETFARISGYCEQND 938
G +G SG GK+TL+ ++AG +T G G+ R++ P + R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RGVGMVFQSY 84
Query: 939 IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL---KPLRQSLVGLPGVNG 995
P ++V E++ + L + R + EV++L L KP
Sbjct: 85 ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KA 133
Query: 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIH 1053
LS QR+R+ I LVA PS+ +DEP S LDA A + MR R GRT++ H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTH 192
Query: 1054 QPSIDIFEAFDELFLMKRGGREVYVG 1079
++ D++ ++ GR VG
Sbjct: 193 D-QVEAMTLADKIVVLD-AGRVAQVG 216
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTA 377
D + +SGGQ++RV G +V +DE + LD++ Q+ +H G
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM-RIEISRLHKRLGRT 186
Query: 378 VISLLQPAPETYNLFDDIILLSDGQIVYQG-PREL 411
+I + E L D I++L G++ G P EL
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(nucleotide-free Form)
Length = 595
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 90/181 (49%), Gaps = 13/181 (7%)
Query: 882 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQET----FARISGYCEQN 937
G +TAL+G SG+GK+T++ +L + +G I + G+ +Q ++I ++
Sbjct: 370 GSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 427
Query: 938 DIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNG-- 995
+ S ++ E++ Y A P V +E + E + ++ Q + G G
Sbjct: 428 ILFS--CSIAENIAYGA--DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 483
Query: 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1055
LS Q++R+ IA L+ NP I+ +DE TS LDA +V + +D GRTV+ H+
Sbjct: 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRL 542
Query: 1056 S 1056
S
Sbjct: 543 S 543
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 42/212 (19%), Positives = 80/212 (37%), Gaps = 40/212 (18%)
Query: 155 LHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPXXXXXXXXXXXXXXXDPSLKVSGRVTY 214
+H + + I +D S + G +T L+GP DP+ SG ++
Sbjct: 347 VHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISL 403
Query: 215 NGHNMDEFVPE--RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKA 272
+GH++ + P R+ + + ++ E +A+ A
Sbjct: 404 DGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGA--------------------- 442
Query: 273 AGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV--SGGQKK 330
DP V + E AN + + +T+VG+ +GV SGGQK+
Sbjct: 443 ----DDPS-SVTAEEIQRVAEVANAVA----FIRNFPQGFNTVVGE---KGVLLSGGQKQ 490
Query: 331 RVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
R+ ++ L +DE ++ LD+ + +
Sbjct: 491 RIAIARALLKNPKILLLDEATSALDAENEYLV 522
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 93/206 (45%), Gaps = 26/206 (12%)
Query: 882 GVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGDIRISGYPKKQETFARISGYCEQND 938
G +G SG GK+TL+ ++AG +T G G+ R++ P + R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RGVGMVFQSY 84
Query: 939 IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL---KPLRQSLVGLPGVNG 995
P ++V E++ + L + R + EV++L L KP
Sbjct: 85 ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KA 133
Query: 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIH 1053
LS QR+R+ I LVA PS+ +D+P S LDA A + MR R GRT++ H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTH 192
Query: 1054 QPSIDIFEAFDELFLMKRGGREVYVG 1079
++ D++ ++ GR VG
Sbjct: 193 D-QVEAMTLADKIVVLD-AGRVAQVG 216
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTA 377
D + +SGGQ++RV G +V +D+ + LD++ Q+ +H G
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQM-RIEISRLHKRLGRT 186
Query: 378 VISLLQPAPETYNLFDDIILLSDGQIVYQG-PREL 411
+I + E L D I++L G++ G P EL
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(plate Form)
Length = 619
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 89/181 (49%), Gaps = 13/181 (7%)
Query: 882 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQET----FARISGYCEQN 937
G +TAL+G SG+GK+T++ +L + +G I + G+ +Q ++I ++
Sbjct: 401 GSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 458
Query: 938 DIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNG-- 995
+ S ++ E++ Y A P V +E + E + ++ Q + G G
Sbjct: 459 ILFS--CSIAENIAYGA--DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 514
Query: 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1055
LS Q++R+ IA L+ NP I+ +DE TS LDA +V + +D GRTV+ H
Sbjct: 515 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHHL 573
Query: 1056 S 1056
S
Sbjct: 574 S 574
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/212 (20%), Positives = 80/212 (37%), Gaps = 40/212 (18%)
Query: 155 LHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPXXXXXXXXXXXXXXXDPSLKVSGRVTY 214
+H + + I +D S + G +T L+GP DP+ SG ++
Sbjct: 378 VHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISL 434
Query: 215 NGHNMDEFVPE--RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKA 272
+GH++ + P R+ + + ++ E +A+ A
Sbjct: 435 DGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGA--------------------- 473
Query: 273 AGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV--SGGQKK 330
DP V + E AN + G + T+VG+ +GV SGGQK+
Sbjct: 474 ----DDPS-SVTAEEIQRVAEVANAVAFIRNFPQGFN----TVVGE---KGVLLSGGQKQ 521
Query: 331 RVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
R+ ++ L +DE ++ LD+ + +
Sbjct: 522 RIAIARALLKNPKILLLDEATSALDAENEYLV 553
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 10/189 (5%)
Query: 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGDIRISGYPKKQE 925
L +L G++ R G + ++G SG+GK+T + ++L G I I +
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 75
Query: 926 TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
G Q P +TV ++ + P +V R+ + MEL++ L+
Sbjct: 76 KVREEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPREKAEAKAMELLDKVGLKD 130
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1045
P + LS Q +R+ IA L P I+ DEPTS LD V+ ++ + G
Sbjct: 131 KAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG 188
Query: 1046 RTVVCTIHQ 1054
T+V H+
Sbjct: 189 MTMVVVTHE 197
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
Query: 324 VSGGQKKRVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLL 382
+SGGQ +RV + + P + LF DE ++ LD ++++ KQ N G ++ +
Sbjct: 139 LSGGQAQRVAIARALAMEPKIMLF-DEPTSALDPEMVGEVLSVMKQ--LANEGMTMVVVT 195
Query: 383 QPAPETYNLFDDIILLSDGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEV 436
+ D ++ + G I+ +G P +L F P+ + FL +V
Sbjct: 196 HEMGFAREVGDRVLFMDGGYIIEEGKPEDL---------FDRPQHERTKAFLSKV 241
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 10/189 (5%)
Query: 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGDIRISGYPKKQE 925
L +L G++ R G + ++G SG+GK+T + ++L G I I +
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 96
Query: 926 TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
G Q P +TV ++ + P +V R+ + MEL++ L+
Sbjct: 97 KVREEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPREKAEAKAMELLDKVGLKD 151
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1045
P + LS Q +R+ IA L P I+ DEPTS LD V+ ++ + G
Sbjct: 152 KAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG 209
Query: 1046 RTVVCTIHQ 1054
T+V H+
Sbjct: 210 MTMVVVTHE 218
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
Query: 324 VSGGQKKRVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLL 382
+SGGQ +RV + + P + LF DE ++ LD ++++ KQ N G ++ +
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLF-DEPTSALDPEMVGEVLSVMKQ--LANEGMTMVVVT 216
Query: 383 QPAPETYNLFDDIILLSDGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEV 436
+ D ++ + G I+ +G P +L F P+ + FL +V
Sbjct: 217 HEMGFAREVGDRVLFMDGGYIIEEGKPEDL---------FDRPQHERTKAFLSKV 262
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 97/212 (45%), Gaps = 14/212 (6%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ---ETF 927
+L G++ + G AL+G SG GK+T + ++ ++ + G + I G +
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRTINVRYL 462
Query: 928 ARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL 987
I G Q + T+ E++ Y E+ ++ + +++L +L
Sbjct: 463 REIIGVVSQEPVLFA-TTIAENIRYGREDVTMDEIEKAVKEANAYDF--IMKLPHQFDTL 519
Query: 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1047
VG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V + + GRT
Sbjct: 520 VGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL-DKAREGRT 577
Query: 1048 VVCTIHQPSI----DIFEAFDELFLMKRGGRE 1075
+ H+ S D+ FD ++++G +
Sbjct: 578 TIVIAHRLSTVRNADVIAGFDGGVIVEQGNHD 609
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 20/195 (10%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARI 930
+L G+S + G AL+G SG GK+T++ +L + + G + + G KQ +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 931 SGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGL 990
+ E + + + +R + EE++ + + Q + L
Sbjct: 1106 RAQLG--------IVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL 1157
Query: 991 P-------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1041
P G G LS Q++R+ IA LV P I+ +DE TS LD + +V + +
Sbjct: 1158 PDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL-DK 1216
Query: 1042 VDTGRTVVCTIHQPS 1056
GRT + H+ S
Sbjct: 1217 AREGRTCIVIAHRLS 1231
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 87/206 (42%), Gaps = 39/206 (18%)
Query: 155 LHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPXXXXXXXXXXXXXXXDPSLKVSGRVTY 214
+H ++K + ILK ++ VK G+ L+G DP + G V+
Sbjct: 393 IHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP---LDGMVSI 449
Query: 215 NGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAG 274
+G ++ RT I +RE + GV ++ +L + E
Sbjct: 450 DGQDI------RT----------INVRYLREII-------GVVSQEPVLFATTIAENIRY 486
Query: 275 IKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG--VSGGQKKRV 332
+ D +D KA +EAN D+ +K L DT+VG+ RG +SGGQK+R+
Sbjct: 487 GREDVTMDEIEKAV----KEANAY-DFIMK---LPHQFDTLVGE---RGAQLSGGQKQRI 535
Query: 333 TTGEMMVGPALALFMDEISTGLDSST 358
+V L +DE ++ LD+ +
Sbjct: 536 AIARALVRNPKILLLDEATSALDTES 561
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 313 DTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSST 358
+T VGD+ + +SGGQK+R+ +V L +DE ++ LD+ +
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 97/212 (45%), Gaps = 14/212 (6%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ---ETF 927
+L G++ + G AL+G SG GK+T + ++ ++ + G + I G +
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRTINVRYL 462
Query: 928 ARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL 987
I G Q + T+ E++ Y E+ ++ + +++L +L
Sbjct: 463 REIIGVVSQEPVLFA-TTIAENIRYGREDVTMDEIEKAVKEANAYDF--IMKLPHQFDTL 519
Query: 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1047
VG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V + + GRT
Sbjct: 520 VGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL-DKAREGRT 577
Query: 1048 VVCTIHQPSI----DIFEAFDELFLMKRGGRE 1075
+ H+ S D+ FD ++++G +
Sbjct: 578 TIVIAHRLSTVRNADVIAGFDGGVIVEQGNHD 609
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 20/195 (10%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARI 930
+L G+S + G AL+G SG GK+T++ +L + + G + + G KQ +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 931 SGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGL 990
+ E + + + +R + EE++ + + Q + L
Sbjct: 1106 RAQLG--------IVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL 1157
Query: 991 P-------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1041
P G G LS Q++R+ IA LV P I+ +DE TS LD + +V + +
Sbjct: 1158 PDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL-DK 1216
Query: 1042 VDTGRTVVCTIHQPS 1056
GRT + H+ S
Sbjct: 1217 AREGRTCIVIAHRLS 1231
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 87/206 (42%), Gaps = 39/206 (18%)
Query: 155 LHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPXXXXXXXXXXXXXXXDPSLKVSGRVTY 214
+H ++K + ILK ++ VK G+ L+G DP + G V+
Sbjct: 393 IHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP---LDGMVSI 449
Query: 215 NGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAG 274
+G ++ RT I +RE + GV ++ +L + E
Sbjct: 450 DGQDI------RT----------INVRYLREII-------GVVSQEPVLFATTIAENIRY 486
Query: 275 IKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG--VSGGQKKRV 332
+ D +D KA +EAN D+ +K L DT+VG+ RG +SGGQK+R+
Sbjct: 487 GREDVTMDEIEKAV----KEANAY-DFIMK---LPHQFDTLVGE---RGAQLSGGQKQRI 535
Query: 333 TTGEMMVGPALALFMDEISTGLDSST 358
+V L +DE ++ LD+ +
Sbjct: 536 AIARALVRNPKILLLDEATSALDTES 561
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 313 DTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSST 358
+T VGD+ + +SGGQK+R+ +V L +DE ++ LD+ +
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 92/195 (47%), Gaps = 24/195 (12%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK----QET 926
+L G+S + PG AL+G SG GK+T++ +L + + G+I I G K + T
Sbjct: 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALL--ERFYDTLGGEIFIDGSEIKTLNPEHT 1151
Query: 927 FARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV-------E 979
++I+ ++ + ++ E++ Y L P S +EE L E
Sbjct: 1152 RSQIAIVSQEPTLFD--CSIAENIIYG----LDP---SSVTMAQVEEAARLANIHNFIAE 1202
Query: 980 LKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1039
L ++ VG G LS Q++R+ IA LV NP I+ +DE TS LD + +V +
Sbjct: 1203 LPEGFETRVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEAL- 1260
Query: 1040 NTVDTGRTVVCTIHQ 1054
+ GRT + H+
Sbjct: 1261 DRAREGRTCIVIAHR 1275
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 29/220 (13%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITG-DIRISGYPK 922
+L G++ G AL+G SG GK+T++ DVL G+ T I G D+R
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKIT---IDGVDVRDINLEF 489
Query: 923 KQETFARISGYCEQNDIHSPFV---TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVE 979
++ A +S P + T+ E++ E+ + + E+ ++
Sbjct: 490 LRKNVAVVS--------QEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIK--T 539
Query: 980 LKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1039
L +LVG G LS Q++R+ IA LV NP I+ +DE TS LDA + IV + +
Sbjct: 540 LPNGYNTLVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQAL- 597
Query: 1040 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079
+ GRT + H+ S I A +L + + G+ V VG
Sbjct: 598 DKAAKGRTTIIIAHRLST-IRNA--DLIISCKNGQVVEVG 634
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 313 DTMVGDEMRRG--VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSST 358
+T+VGD RG +SGGQK+R+ +V L +DE ++ LD+ +
Sbjct: 545 NTLVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAES 589
Score = 33.1 bits (74), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 51/250 (20%), Positives = 94/250 (37%), Gaps = 45/250 (18%)
Query: 162 KKHLTILKDVSGIVKPGRLTLLLGPPXXXXXXXXXXXXXXXDPSLKVSGRVTYNGHNMDE 221
+ + ILK +S V+PG+ L+GP D + G + +G +
Sbjct: 1089 RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT---LGGEIFIDGSEIKT 1145
Query: 222 FVPERTAAYIS--QHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
PE T + I+ + + + ++ E + + G+ P
Sbjct: 1146 LNPEHTRSQIAIVSQEPTLFDCSIAENIIY------------------------GLDPS- 1180
Query: 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG--VSGGQKKRVTTGEM 337
+ EEA + + + + L +T VGD RG +SGGQK+R+
Sbjct: 1181 ------SVTMAQVEEAARLANIHNFIAELPEGFETRVGD---RGTQLSGGQKQRIAIARA 1231
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397
+V L +DE ++ LD+ + + + G I + N D I +
Sbjct: 1232 LVRNPKILLLDEATSALDTESEKVVQEALDR---AREGRTCIVIAHRLNTVMNA-DCIAV 1287
Query: 398 LSDGQIVYQG 407
+S+G I+ +G
Sbjct: 1288 VSNGTIIEKG 1297
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 105/217 (48%), Gaps = 25/217 (11%)
Query: 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ- 924
+D +L +S +P + A G SG GK+T+ +L + G+I I G P
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL--ERFYQPTAGEITIDGQPIDNI 69
Query: 925 --ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP 982
E + G+ Q D T+ E+L Y L + E + +V++L +
Sbjct: 70 SLENWRSQIGFVSQ-DSAIMAGTIRENLTYG----LEGDYTDED----LWQVLDLAFARS 120
Query: 983 LRQSL-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1035
+++ VG GV +S QR+RL IA + NP I+ +DE T+ LD+ + ++V
Sbjct: 121 FVENMPDQLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 1036 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ + +++ GRT + H+ S I +A D+++ +++G
Sbjct: 180 KAL-DSLMKGRTTLVIAHRLST-IVDA-DKIYFIEKG 213
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 94/222 (42%), Gaps = 36/222 (16%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-----------------YIT 912
L+GVS + G +T ++G +G+GK+TL++V+ G + G Y
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 913 GDIRI--SGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMF 970
G +R + P K+ T E N SP SLFY W+ P+ K F
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPL----NSLFYKKWI---PKEEEMVEKAF 135
Query: 971 IEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1030
+++E ++L L G LS Q K + I L+ NP +I MDEP +G+
Sbjct: 136 --KILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL 188
Query: 1031 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
A + V G T + H+ I + D L++M G
Sbjct: 189 AHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNG 229
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette
From An Abc Transporter
Length = 257
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 94/222 (42%), Gaps = 36/222 (16%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-----------------YIT 912
L+GVS + G +T ++G +G+GK+TL++V+ G + G Y
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 913 GDIRI--SGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMF 970
G +R + P K+ T E N SP SLFY W+ P+ K F
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPL----NSLFYKKWI---PKEEEMVEKAF 135
Query: 971 IEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1030
+++E ++L L G LS Q K + I L+ NP +I MD+P +G+
Sbjct: 136 --KILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGL 188
Query: 1031 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
A + V G T + H+ I + D L++M G
Sbjct: 189 AHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNG 229
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 88/207 (42%), Gaps = 31/207 (14%)
Query: 880 RPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGDIRISG------YPKKQETFARI 930
+ G L+G SG GKTT + ++AG + G GD ++ P K A +
Sbjct: 27 KDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMV 86
Query: 931 SGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL---KPLRQSL 987
Q+ P +TVY+++ + LR P + R + E++ L EL KP
Sbjct: 87 F----QSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP----- 137
Query: 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--G 1045
LS QR+R+ + +V P + MDEP S LDA+ + MR + G
Sbjct: 138 ------RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK-LRVRMRAELKKLQRQLG 190
Query: 1046 RTVVCTIHQPSIDIFEAFDELFLMKRG 1072
T + H ++ D + +M RG
Sbjct: 191 VTTIYVTHD-QVEAMTMGDRIAVMNRG 216
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISL 381
R +SGGQ++RV G +V MDE + LD+ ++ K+ + G I +
Sbjct: 138 RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK-LQRQLGVTTIYV 196
Query: 382 LQPAPETYNLFDDIILLSDG 401
E + D I +++ G
Sbjct: 197 THDQVEAMTMGDRIAVMNRG 216
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
Length = 260
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 109/249 (43%), Gaps = 32/249 (12%)
Query: 828 SHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTAL 887
SH KK G+ + F + ++ P+Q + L ++ G AL
Sbjct: 9 SHEKKFGVNIEFSDVNFSY---------PKQTNHR--------TLKSINFFIPSGTTCAL 51
Query: 888 MGVSGAGKTTLMDVLAGRKTGGYITGDIRISG---YPKKQETFARISGYCEQNDIHSPFV 944
+G +G+GK+T+ +L GDI+I G + + I G Q+ I
Sbjct: 52 VGHTGSGKSTIAKLLYRFYDA---EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNET 108
Query: 945 TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR-QSLVGLPGVNGLSTEQRKR 1003
Y ++ Y EV T+ ++ + +E P + ++VG G+ LS +R+R
Sbjct: 109 IKY-NILYGKLDATDEEVIKATKSA---QLYDFIEALPKKWDTIVGNKGMK-LSGGERQR 163
Query: 1004 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1063
+ IA L+ +P I+ DE TS LD++ + + V + + RT++ H+ S +
Sbjct: 164 IAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED-LRKNRTLIIIAHRLS--TISSA 220
Query: 1064 DELFLMKRG 1072
+ + L+ +G
Sbjct: 221 ESIILLNKG 229
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 313 DTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHI 372
DT+VG++ + +SGG+++R+ ++ + DE ++ LDS T + F++ +
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEY----LFQKAVED 200
Query: 373 NSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEF 415
+ ++ T + + IILL+ G+IV +G + +L+
Sbjct: 201 LRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL 243
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
Length = 538
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 109/251 (43%), Gaps = 45/251 (17%)
Query: 837 LPFEPYSLTFDEVVY----------SVDMPQQMK----LQGVPEDKLVLLNGVSGAFRPG 882
LP E + DE+ + S D+ +MK ++ + + +LV+ NG + + G
Sbjct: 238 LPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEA---KEG 294
Query: 883 VLTALMGVSGAGKTTLMDVLAGRKTG--GYITGDIRISGYPKKQETFARISGYCEQNDIH 940
+ ++G +G GKTT +L G T G +T + +I Y K Q F G +Q +
Sbjct: 295 EIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIFPNYDGTVQQYLEN 353
Query: 941 SPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQ 1000
+ ++L S+W F EEV + + L L +S VN LS +
Sbjct: 354 AS----KDALSTSSW--------------FFEEVTKRLNLHRLLES-----NVNDLSGGE 390
Query: 1001 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI-HQPSIDI 1059
++L IA L + +D+P+S LD IV + ++ + V I H SI
Sbjct: 391 LQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHD 450
Query: 1060 FEAFDELFLMK 1070
+ A D + + K
Sbjct: 451 YIA-DRIIVFK 460
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 78/183 (42%), Gaps = 24/183 (13%)
Query: 880 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISG---YCEQ 936
+ + ++G +G GKTT++ +LAG + + ++ K E R G Y
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVG----KDEVLKRFRGKEIYNYF 78
Query: 937 NDIHSPFVTVYESLFY----SAWLR-----LPPEVNSETRKMFIEEVMELVELKPLRQSL 987
+++S + + + Y S +L+ + +++ +K +EV EL+ + L
Sbjct: 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKK---DEVKELLNMTNLWNKD 135
Query: 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1047
+ GL +RL +A L+ + D+P+S LD R + + +R +
Sbjct: 136 ANILSGGGL-----QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYV 190
Query: 1048 VVC 1050
+V
Sbjct: 191 IVV 193
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 89/214 (41%), Gaps = 40/214 (18%)
Query: 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE 925
EDK +L G+S PG + A+MG +G+GK+TL LAGR+ G + G ++
Sbjct: 12 EDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG----KD 66
Query: 926 TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV------- 978
A SP E +F + + P E+ + + F++ + V
Sbjct: 67 LLAL-----------SPEDRAGEGIFMA--FQYPVEIPGVSNQFFLQTALNAVRSYRGQE 113
Query: 979 --------ELKPLRQSLVGLP------GVN-GLSTEQRKRLTIAVELVANPSIIFMDEPT 1023
+L + +L+ +P VN G S ++KR I V P + +DE
Sbjct: 114 TLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESD 173
Query: 1024 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1057
SGLD A +V V + D R+ + H I
Sbjct: 174 SGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI 207
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 53.1 bits (126), Expect = 9e-07, Method: Composition-based stats.
Identities = 50/201 (24%), Positives = 90/201 (44%), Gaps = 10/201 (4%)
Query: 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGGYITGD-IRISGYPK 922
E+ + L V+ + G ++ G SG+GK+T ++++ + T G + D I+ +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 923 KQETFARIS--GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL 980
+ T R G+ Q P +T E++ + + E R+ E ++ EL
Sbjct: 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAEL 134
Query: 981 KPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1040
+ N LS Q++R+ IA L NP II DEPT LD++ + + ++
Sbjct: 135 ----EERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKK 190
Query: 1041 -TVDTGRTVVCTIHQPSIDIF 1060
+ G+TVV H ++ F
Sbjct: 191 LNEEDGKTVVVVTHDINVARF 211
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
Length = 267
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 89/214 (41%), Gaps = 40/214 (18%)
Query: 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE 925
EDK +L G+S PG + A+MG +G+GK+TL LAGR+ G + G ++
Sbjct: 31 EDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG----KD 85
Query: 926 TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV------- 978
A SP E +F + + P E+ + + F++ + V
Sbjct: 86 LLAL-----------SPEDRAGEGIFMA--FQYPVEIPGVSNQFFLQTALNAVRSYRGQE 132
Query: 979 --------ELKPLRQSLVGLP------GVN-GLSTEQRKRLTIAVELVANPSIIFMDEPT 1023
+L + +L+ +P VN G S ++KR I V P + +DE
Sbjct: 133 TLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESD 192
Query: 1024 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1057
SGLD A +V V + D R+ + H I
Sbjct: 193 SGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI 226
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp-
Binding Cassette Of An Abc Transporter
Length = 257
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 42/225 (18%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-----------------YIT 912
L+GVS + G +T ++G +G+GK+TL++V+ G + G Y
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 913 GDIRI--SGYPKKQETFAR---ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETR 967
G +R + P K+ T I C P + SLFY W+ P+
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEIC-------PGESPLNSLFYKKWI---PKEEEMVE 132
Query: 968 KMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
K F +++E ++L L G LS Q K + I L+ NP +I MDEP +G+
Sbjct: 133 KAF--KILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVA 185
Query: 1028 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
A + V G T + H+ I + D L++M G
Sbjct: 186 PGLAHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNG 229
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 55/204 (26%), Positives = 90/204 (44%), Gaps = 26/204 (12%)
Query: 859 MKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRIS 918
M+LQ V E L +SG R G + L+G +GAGK+TL+ +AG +G G I+ +
Sbjct: 5 MQLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFA 59
Query: 919 GYPKKQETFARIS---GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVM 975
G P + + +++ Y Q PF T W L + +TR + +V
Sbjct: 60 GQPLEAWSATKLALHRAYLSQQQT-PPFAT-------PVWHYLTLHQHDKTRTELLNDVA 111
Query: 976 ELVEL-KPLRQSLVGLPGVNGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDAR 1029
+ L L +S L G QR RL V + ANP+ ++ +D+P + LD
Sbjct: 112 GALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVA 167
Query: 1030 AAAIVMRTVRNTVDTGRTVVCTIH 1053
+ + + + G +V + H
Sbjct: 168 QQSALDKILSALSQQGLAIVMSSH 191
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 55/204 (26%), Positives = 89/204 (43%), Gaps = 26/204 (12%)
Query: 859 MKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRIS 918
M+LQ V E L +SG R G + L+G +GAGK+TL+ +AG +G G I+ +
Sbjct: 5 MQLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFA 59
Query: 919 GYPKKQETFARIS---GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVM 975
G P + + +++ Y Q PF T W L + +TR + +V
Sbjct: 60 GQPLEAWSATKLALHRAYLSQQQT-PPFAT-------PVWHYLTLHQHDKTRTELLNDVA 111
Query: 976 ELVEL-KPLRQSLVGLPGVNGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDAR 1029
+ L L +S L G QR RL V + ANP+ ++ +D+P LD
Sbjct: 112 GALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVA 167
Query: 1030 AAAIVMRTVRNTVDTGRTVVCTIH 1053
+ + + + G +V + H
Sbjct: 168 QQSALDKILSALSQQGLAIVMSSH 191
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 23/159 (14%)
Query: 887 LMGVSGAGKTTLMDVLAGRKTGGYITGDIRISG---YPKKQETFARISGYCEQNDIHSPF 943
L+G +GAGK+ ++++AG G++R++G P E R G+ Q+ P
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD--RGEVRLNGADITPLPPER--RGIGFVPQDYALFPH 84
Query: 944 VTVYESLFYSAWLRLPPEVNSETRKMFIEE---VMELVELKPLRQSLVGLPGVNGLSTEQ 1000
++VY ++ Y LR V + R + E + L++ KP R LS +
Sbjct: 85 LSVYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKPAR-----------LSGGE 131
Query: 1001 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1039
R+R+ +A LV P ++ +DEP S +D + ++M +R
Sbjct: 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELR 170
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 28/198 (14%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARI 930
+L ++ + G A +G+SG GK+TL++++ + +G I I G+ K +
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIP--RFYDVTSGQILIDGHNIKDFLTGSL 413
Query: 931 S---GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL 987
G +Q++I TV E++ L P + EEV+E ++ +
Sbjct: 414 RNQIGLVQQDNILFS-DTVKENIL----LGRPTATD--------EEVVEAAKMANAHDFI 460
Query: 988 VGLP-------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038
+ LP G G LS Q++RL+IA + NP I+ +DE TS LD + +I+ +
Sbjct: 461 MNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEAL 520
Query: 1039 RNTVDTGRTVVCTIHQPS 1056
+ + RT + H+ S
Sbjct: 521 -DVLSKDRTTLIVAHRLS 537
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 86/209 (41%), Gaps = 45/209 (21%)
Query: 209 SGRVTYNGHNMDEFVPE--RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTEL 266
SG++ +GHN+ +F+ R + Q DN + TV+E +
Sbjct: 395 SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLG---------------- 438
Query: 267 SRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV-- 324
+P A E EA + + + ++ L DT VG+ RGV
Sbjct: 439 ---------RP--------TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGE---RGVKL 478
Query: 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQP 384
SGGQK+R++ + + L +DE ++ LD + + ++ + + S ++
Sbjct: 479 SGGQKQRLSIARIFLNNPPILILDEATSALDLESE----SIIQEALDVLSKDRTTLIVAH 534
Query: 385 APETYNLFDDIILLSDGQIVYQGP-RELV 412
T D I+++ +G IV G REL+
Sbjct: 535 RLSTITHADKIVVIENGHIVETGTHRELI 563
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 88/210 (41%), Gaps = 7/210 (3%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISG---YPKK 923
D +L GV+ G + ALMG +GAGK+TL +LAG G+I + G
Sbjct: 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELS 73
Query: 924 QETFARISGYCE-QNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP 982
+ AR + Q + P VT+ L + +L EV F +V + +EL
Sbjct: 74 PDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAE---FWTKVKKALELLD 130
Query: 983 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1042
+S + G S ++KR I LV P+ +DE SGLD A +V R V
Sbjct: 131 WDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMR 190
Query: 1043 DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ H I + D++ +M G
Sbjct: 191 GPNFGALVITHYQRILNYIQPDKVHVMMDG 220
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Query: 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI 379
+ G SGG+KKR +++V +DE +GLD + N G VI
Sbjct: 140 LNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVI 199
Query: 380 SLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRK 427
+ Q Y D + ++ DG++V G EL LE E+ G++ K K
Sbjct: 200 THYQRIL-NYIQPDKVHVMMDGRVVATGGPELALE-LEAKGYEWLKEK 245
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 96/229 (41%), Gaps = 40/229 (17%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFA 928
+L G++ PG +TAL+G +G+GK+T+ +L + TGG + + G P Q
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG----KVLLDGEPLVQ---- 85
Query: 929 RISGYCEQNDIHSPFVTV-YESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL 987
+ + +H+ V E L + R TR +EE+ + +
Sbjct: 86 -----YDHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESGAHDFI 139
Query: 988 VGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038
G P N LS QR+ + +A L+ P ++ +D+ TS LDA V R +
Sbjct: 140 SGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLL 199
Query: 1039 RNTVD-TGRTVVCTIHQPSI-------------DIFEAFDELFLMKRGG 1073
+ + RTV+ HQ S+ + E L LM+RGG
Sbjct: 200 YESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG 248
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 49/256 (19%), Positives = 94/256 (36%), Gaps = 46/256 (17%)
Query: 164 HLTILKDVSGIVKPGRLTLLLGPPXXXXXXXXXXXXXXXDPSLKVSGRVTYNGHNMDEFV 223
++ +L+ ++ + PG++T L+GP P+ G+V +G +
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPL---- 83
Query: 224 PERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
Q+D+H + VG + R A G+ P ++
Sbjct: 84 --------VQYDHHY----------LHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEE 125
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPAL 343
A G D+ + G DT VG E +SGGQ++ V ++
Sbjct: 126 ITAVAMESGAH-----DF---ISGFPQGYDTEVG-ETGNQLSGGQRQAVALARALIRKPR 176
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAV-----ISLLQPAPETYNLFDDIILL 398
L +D+ ++ LD+ ++ ++ S T + +SL + A I+ L
Sbjct: 177 LLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQLSLAERA-------HHILFL 229
Query: 399 SDGQIVYQGPRELVLE 414
+G + QG ++E
Sbjct: 230 KEGSVCEQGTHLQLME 245
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 15/206 (7%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP---KKQETFA 928
L+ VS + G AL+G SG+GK+T+ ++ + +G I + G+ K
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFT--RFYDVDSGSICLDGHDVRDYKLTNLR 416
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
R QN +H T+ ++ Y+A E + + ME +E P Q L
Sbjct: 417 RHFALVSQN-VHLFNDTIANNIAYAAEGEYTREQIEQAARQ--AHAMEFIENMP--QGLD 471
Query: 989 GLPGVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1046
+ G NG LS QR+R+ IA L+ + ++ +DE TS LD + + + + + +
Sbjct: 472 TVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAAL-DELQKNK 530
Query: 1047 TVVCTIHQPSIDIFEAFDELFLMKRG 1072
TV+ H+ S E DE+ ++ G
Sbjct: 531 TVLVIAHRLS--TIEQADEILVVDEG 554
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 313 DTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHI 372
DT++G E +SGGQ++RV ++ A L +DE ++ LD+ + I + +
Sbjct: 471 DTVIG-ENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDE-LQK 528
Query: 373 NSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQG 407
N VI+ T D+I+++ +G+I+ +G
Sbjct: 529 NKTVLVIA---HRLSTIEQADEILVVDEGEIIERG 560
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 70/163 (42%), Gaps = 19/163 (11%)
Query: 875 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQ---ETFAR 929
+S + G L+G SG GKTT + +AG T G I + + P+K R
Sbjct: 25 LSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKER 84
Query: 930 ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL---KPLRQS 986
Q+ P TVY+++ + LR P+ + R + E + L EL KP
Sbjct: 85 DVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNRKPRE-- 142
Query: 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
LS QR+R+ + ++ P + DEP S LDA+
Sbjct: 143 ---------LSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAK 176
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 60/229 (26%), Positives = 98/229 (42%), Gaps = 28/229 (12%)
Query: 860 KLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISG 919
+LQ V E L +SG R G + L+G +GAGK+TL+ AG +G G I+ +G
Sbjct: 6 QLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAG 60
Query: 920 YPKKQETFARIS---GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVME 976
P + + +++ Y Q PF T W L + +TR + +V
Sbjct: 61 QPLEAWSATKLALHRAYLSQQQT-PPFAT-------PVWHYLTLHQHDKTRTELLNDVAG 112
Query: 977 LVEL-KPLRQSLVGLPGVNGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARA 1030
+ L L +S L G QR RL V + ANP+ ++ +DEP + LD
Sbjct: 113 ALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ 168
Query: 1031 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079
+ + + + G +V + H + + A L +GG+ + G
Sbjct: 169 QSALDKILSALCQQGLAIVXSSHDLNHTLRHAHRAWLL--KGGKXLASG 215
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 60/229 (26%), Positives = 98/229 (42%), Gaps = 28/229 (12%)
Query: 860 KLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISG 919
+LQ V E L +SG R G + L+G +GAGK+TL+ AG +G G I+ +G
Sbjct: 6 QLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAG 60
Query: 920 YPKKQETFARIS---GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVME 976
P + + +++ Y Q PF T W L + +TR + +V
Sbjct: 61 QPLEAWSATKLALHRAYLSQQQT-PPFAT-------PVWHYLTLHQHDKTRTELLNDVAG 112
Query: 977 LVEL-KPLRQSLVGLPGVNGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARA 1030
+ L L +S L G QR RL V + ANP+ ++ +DEP + LD
Sbjct: 113 ALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ 168
Query: 1031 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079
+ + + + G +V + H + + A L +GG+ + G
Sbjct: 169 QSALDKILSALSQQGLAIVXSSHDLNHTLRHAHRAWLL--KGGKXLASG 215
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 95/223 (42%), Gaps = 30/223 (13%)
Query: 862 QGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921
+G P +K L N VS G + G +G+GK+TL+ ++AG +GD+ G
Sbjct: 14 RGTPLEKKALEN-VSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGER 70
Query: 922 KKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981
KK GY + +I F + F R+ EV + + + +
Sbjct: 71 KK--------GYEIRRNIGIAFQYPEDQFFAE---RVFDEVAFAVKNFYPDR-----DPV 114
Query: 982 PLRQSLVGLPGVNG----------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1031
PL + + G++ LS +++R+ IA +V P I+ +DEP GLD
Sbjct: 115 PLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGK 174
Query: 1032 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074
++R V G+TV+ H + D + ++++G +
Sbjct: 175 TDLLRIVEKWKTLGKTVILISHDIET-VINHVDRVVVLEKGKK 216
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLD---SSTTFQIVNCFKQNIHINSGTAVIS 380
+SGG+K+RV ++V L +DE GLD + +IV +K G VI
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK-----TLGKTVIL 193
Query: 381 LLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFES 418
+ N D +++L G+ V+ G R +EF E
Sbjct: 194 ISHDIETVINHVDRVVVLEKGKKVFDGTR---MEFLEK 228
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 99/216 (45%), Gaps = 33/216 (15%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISG---YPKKQETF 927
+LN +S + PG + ++G SG GKTTL+ LAG + +G+I +SG + K
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD--SGEISLSGKTIFSKNTNLP 76
Query: 928 ARIS--GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETR----KMFIEEVMELVELK 981
R GY Q + P +TVY ++ Y N + R + IE ++EL +
Sbjct: 77 VRERRLGYLVQEGVLFPHLTVYRNIAYGLG-------NGKGRTAQERQRIEAMLELTGIS 129
Query: 982 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1041
L + LS Q++R +A L +P +I +DEP S LD + + R +R
Sbjct: 130 ELAGRY-----PHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ----LRRQIRED 180
Query: 1042 V-----DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ G++ V H + + D + +MK+G
Sbjct: 181 MIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQG 215
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 99/228 (43%), Gaps = 31/228 (13%)
Query: 862 QGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921
+G P +K L N VS G + G +G+GK+TL+ ++AG +GD+ G
Sbjct: 16 RGTPLEKKALEN-VSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGER 72
Query: 922 KKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981
KK GY + +I F + F R+ EV + + + +
Sbjct: 73 KK--------GYEIRRNIGIAFQYPEDQFFAE---RVFDEVAFAVKNFYPDR-----DPV 116
Query: 982 PLRQSLVGLPGVNG----------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1031
PL + + G++ LS +++R+ IA +V P I+ +DEP GLD
Sbjct: 117 PLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGK 176
Query: 1032 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079
++R V G+TV+ H + D + ++++ G++V+ G
Sbjct: 177 TDLLRIVEKWKTLGKTVILISHDIET-VINHVDRVVVLEK-GKKVFDG 222
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLD---SSTTFQIVNCFKQNIHINSGTAVIS 380
+SGG+K+RV ++V L +DE GLD + +IV +K G VI
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK-----TLGKTVIL 195
Query: 381 LLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFES 418
+ N D +++L G+ V+ G R +EF E
Sbjct: 196 ISHDIETVINHVDRVVVLEKGKKVFDGTR---MEFLEK 230
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 15/188 (7%)
Query: 880 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQN-- 937
RPG + L+G +G GK+T + +LAG++ R P+ QE G QN
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLG----RFDDPPEWQEIIKYFRGSELQNYF 156
Query: 938 ------DIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVE--LKPLRQSLVG 989
DI + Y A ++ P + E K+ +E+ E V+ +K L+ V
Sbjct: 157 TKMLEDDIKAIIKPQYVDNIPRA-IKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVL 215
Query: 990 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1049
+ LS + +R I + V + DEP+S LD + + +R+ + + V+
Sbjct: 216 KRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVI 275
Query: 1050 CTIHQPSI 1057
C H S+
Sbjct: 276 CVEHDLSV 283
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 28/171 (16%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFA 928
+LN G F + +MG +G GKTTL+ +LAG + G + +S P+K
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQK----- 421
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
I F LF+ + R F+ + +KPLR +
Sbjct: 422 ----------IAPKFPGTVRQLFF-----------KKIRGQFLNPQFQTDVVKPLRIDDI 460
Query: 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1039
V LS + +R+ I + L I +DEP++ LD+ I + +R
Sbjct: 461 IDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIR 511
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1054
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 21/194 (10%)
Query: 882 GVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFARISGYCEQNDI 939
G + A++G +G GK+TL+D+L G R G I E + I G+ Q
Sbjct: 31 GDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI-------------EVYQSI-GFVPQ-FF 75
Query: 940 HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999
SPF S+ + +N+ + + + + L L + + LS
Sbjct: 76 SSPFAY---SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGG 132
Query: 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSID 1058
QR+ + IA + + +I +DEPTS LD IV+ + + + TVV T HQP+
Sbjct: 133 QRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQV 192
Query: 1059 IFEAFDELFLMKRG 1072
+ A L L K+
Sbjct: 193 VAIANKTLLLNKQN 206
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 94/204 (46%), Gaps = 12/204 (5%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARIS 931
L VS PG AL+G SGAGK+T++ +L + +G IRI G Q T A +
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLF--RFYDISSGCIRIDGQDISQVTQASLR 127
Query: 932 ---GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
G Q+ + T+ +++ Y EV + + I + ++ ++ V
Sbjct: 128 SHIGVVPQDTVLFND-TIADNIRYGRVTAGNDEVEAAAQAAGIHDA--IMAFPEGYRTQV 184
Query: 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1048
G G+ LS +++R+ IA ++ P II +DE TS LD + ++ V RT
Sbjct: 185 GERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK-VCANRTT 242
Query: 1049 VCTIHQPSIDIFEAFDELFLMKRG 1072
+ H+ S + D++ ++K G
Sbjct: 243 IVVAHRLSTVV--NADQILVIKDG 264
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 314 TMVGDEMRRGV--SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIH 371
T VG+ RG+ SGG+K+RV ++ + +DE ++ LD+S I + +
Sbjct: 182 TQVGE---RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK-VC 237
Query: 372 INSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 413
N T V++ T D I+++ DG IV +G E +L
Sbjct: 238 ANRTTIVVA---HRLSTVVNADQILVIKDGCIVERGRHEALL 276
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 86/185 (46%), Gaps = 16/185 (8%)
Query: 880 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGD-------IRISGYPKKQETFARISG 932
+ G + ++G +G GK+T + +LAG+ + GD IR + Q F ++
Sbjct: 45 KEGXVVGIVGPNGTGKSTAVKILAGQLIPN-LCGDNDSWDGVIRAFRGNELQNYFEKLKN 103
Query: 933 YCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPG 992
+ + +V + + L + + ET K+ EEV++ +EL+ + +
Sbjct: 104 GEIRPVVKPQYVDLIPKAVKGKVIELLKKAD-ETGKL--EEVVKALELENVLER-----E 155
Query: 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1052
+ LS + +R+ IA L+ N + F DEP+S LD R R +R + G++V+
Sbjct: 156 IQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVE 215
Query: 1053 HQPSI 1057
H ++
Sbjct: 216 HDLAV 220
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 79/196 (40%), Gaps = 28/196 (14%)
Query: 877 GAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFARISGYC 934
G + G + ++G +G GKTT + LAG T G I D+ ++ P Q A G
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKP--QYIKADYEG-- 362
Query: 935 EQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVN 994
TVYE L +L NS K + LKPL + VN
Sbjct: 363 ----------TVYELLSKIDASKL----NSNFYKTEL--------LKPLGIIDLYDREVN 400
Query: 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1054
LS + +R+ IA L+ + I +DEP++ LD V R +R+ + +
Sbjct: 401 ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEH 460
Query: 1055 PSIDIFEAFDELFLMK 1070
+ I D L + +
Sbjct: 461 DVLXIDYVSDRLXVFE 476
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 11/187 (5%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYITGDIR-ISGYPKKQETFA 928
LN VS G + ++G SGAGK+TL+ L R T G + D + ++ + + T A
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
R Q + + S + LP E+++ + V EL+ L L
Sbjct: 81 R-----RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD 135
Query: 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRT 1047
P + LS Q++R+ IA L +NP ++ DE TS LD ++ +++ G T
Sbjct: 136 SYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLT 193
Query: 1048 VVCTIHQ 1054
++ H+
Sbjct: 194 ILLITHE 200
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTA 377
D +SGGQK+RV + L DE ++ LD +TT I+ K +I+ G
Sbjct: 135 DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLK-DINRRLGLT 193
Query: 378 VISLLQPAPETYNLFDDIILLSDGQIVYQ 406
++ + + D + ++S+G+++ Q
Sbjct: 194 ILLITHEMDVVKRICDCVAVISNGELIEQ 222
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 41/192 (21%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGY------PKKQE 925
L+ +S G ++G +GAGKT ++++AG +G I + G P+K +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD--SGRILLDGKDVTDLSPEKHD 73
Query: 926 TFARISGYCEQNDIHSPFVTVYESLFYSAWLRL---PPEVNSETRKMFIEEVMELVELKP 982
+ QN P + V ++L + ++ P V R + IE L++ P
Sbjct: 74 I-----AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEH---LLDRNP 125
Query: 983 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1042
L LS +++R+ +A LV NP I+ +DEP S LD R T
Sbjct: 126 L-----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPR-----------TQ 163
Query: 1043 DTGRTVVCTIHQ 1054
+ R ++ +H+
Sbjct: 164 ENAREMLSVLHK 175
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 77/210 (36%), Gaps = 50/210 (23%)
Query: 209 SGRVTYNGHNMDEFVPER-TAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELS 267
SGR+ +G ++ + PE+ A++ Q+ + M V++ L F R + +
Sbjct: 54 SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI----------- 102
Query: 268 RREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG---V 324
DP +VL D D + + R +
Sbjct: 103 ---------KDPK-----------------------RVL--DTARDLKIEHLLDRNPLTL 128
Query: 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQP 384
SGG+++RV +V L +DE + LD T +H + V+ +
Sbjct: 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSV-LHKKNKLTVLHITHD 187
Query: 385 APETYNLFDDIILLSDGQIVYQGPRELVLE 414
E + D I ++ DG+++ G E + E
Sbjct: 188 QTEARIMADRIAVVMDGKLIQVGKPEEIFE 217
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 587
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 86/173 (49%), Gaps = 35/173 (20%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-------GRKTGGYITGDIRISGYPKK 923
+L+GV+ + +PG L A++G +G+GK+TLM+++ GR + D+R K
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDEL--DVRTV---KL 412
Query: 924 QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
++ IS ++ + S T+ E+L W R E ++ +E++E ++ +
Sbjct: 413 KDLRGHISAVPQETVLFSG--TIKENL---KWGR---EDATD------DEIVEAAKIAQI 458
Query: 984 RQSLVGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
++ LP G S Q++RL+IA LV P ++ +D+ TS +D
Sbjct: 459 HDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISL 381
R SGGQK+R++ +V L +D+ ++ +D T +I++ K+ G +
Sbjct: 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKR---YTKGCTTFII 534
Query: 382 LQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 414
Q P T L D I++L +G++ G + +LE
Sbjct: 535 TQKIP-TALLADKILVLHEGKVAGFGTHKELLE 566
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 97/237 (40%), Gaps = 31/237 (13%)
Query: 839 FEPYSLTFDEVVYSVDMPQQMKLQG---VPEDKLVLLNGVSGAFRPGVLTALMGVSGAGK 895
F PY + F ++ VD+ ++ ++ V + L G R G + ++G +G GK
Sbjct: 336 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 395
Query: 896 TTLMDVLAG--RKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYS 953
TT + +LAG T G + D+ ++ P Q A G TVYE L
Sbjct: 396 TTFVKMLAGVEEPTEGKVEWDLTVAYKP--QYIKAEYEG------------TVYELLSKI 441
Query: 954 AWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVAN 1013
+L NS K + LKPL + V LS + +R+ IA L+ +
Sbjct: 442 DSSKL----NSNFYKTEL--------LKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRD 489
Query: 1014 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070
I +DEP++ LD V R +R+ ++ + + I D L + +
Sbjct: 490 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE 546
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 20/187 (10%)
Query: 880 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGD------IRISGYPKKQETFARISGY 933
+ G++ ++G +G GKTT + +LAG+ + IR + Q F R+
Sbjct: 115 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERL--- 171
Query: 934 CEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMF--IEEVMELVELKPLRQSLVGLP 991
+ +I Y L LP V + R++ ++EV + E+ + L
Sbjct: 172 -KNGEIRPVVKPQYVDL-------LPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLD 223
Query: 992 G-VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1050
++ LS + +R+ IA L+ F DEP+S LD R V R +R + G+ V+
Sbjct: 224 RELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLV 283
Query: 1051 TIHQPSI 1057
H ++
Sbjct: 284 VEHDLAV 290
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 19/199 (9%)
Query: 881 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCE--QND 938
G AL+G SG+GK+T+ ++ + G+I + G+ ++ T A + +
Sbjct: 368 AGKTVALVGRSGSGKSTIASLIT--RFYDIDEGEILMDGHDLREYTLASLRNQVALVSQN 425
Query: 939 IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNG--L 996
+H TV ++ Y+ + E E +M M+ + + L + G NG L
Sbjct: 426 VHLFNDTVANNIAYARTEQYSREQIEEAARM--AYAMDFI--NKMDNGLDTVIGENGVLL 481
Query: 997 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TGRTVVCTIH 1053
S QR+R+ IA L+ + I+ +DE TS LD + R ++ +D RT + H
Sbjct: 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESE----RAIQAALDELQKNRTSLVIAH 537
Query: 1054 QPSIDIFEAFDELFLMKRG 1072
+ S E DE+ +++ G
Sbjct: 538 RLS--TIEKADEIVVVEDG 554
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 9/109 (8%)
Query: 308 LDICADTMVGDEMRRGV--SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNC 365
+D DT++G+ GV SGGQ++R+ ++ + L +DE ++ LD+ + I
Sbjct: 466 MDNGLDTVIGEN---GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAA 522
Query: 366 FKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 414
+ + N + VI+ T D+I+++ DG IV +G +LE
Sbjct: 523 LDE-LQKNRTSLVIA---HRLSTIEKADEIVVVEDGVIVERGTHNDLLE 567
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 12/171 (7%)
Query: 882 GVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGDIRISGYPKKQETFARISGYCEQND 938
G + L+G +GAGKTT + +AG + G I I+ P I+ E
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRR 91
Query: 939 IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998
I P +TVYE+L A+ R + E K +E + L L++ L L G LS
Sbjct: 92 IF-PELTVYENLXXGAYNR----KDKEGIKRDLEWIFSL--FPRLKERLKQLGGT--LSG 142
Query: 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1049
+++ L I L + P ++ DEP+ GL + V ++ G T++
Sbjct: 143 GEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 13/189 (6%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGGYITGDIRISGYPKKQETF- 927
+L G+S + + G +++G SG+GK+TL+ +L T G + + + Y ++E
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 928 --ARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
R G+ Q P +T E++ P+ ++ R ++ L EL L
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYL-----LSEL-GLGD 132
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1045
L P LS +++R+ IA L P ++F DEPT LD+ VM + G
Sbjct: 133 KLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGG 190
Query: 1046 RTVVCTIHQ 1054
++V H+
Sbjct: 191 TSIVMVTHE 199
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 14/115 (12%)
Query: 293 EEANVITDYYLKVLGLDICADTMVGDEMRRG---VSGGQKKRVTTGEMMVGPALALFMDE 349
+EA +Y L LGL GD++ R +SGG+++RV + + LF DE
Sbjct: 115 KEAKERGEYLLSELGL--------GDKLSRKPYELSGGEQQRVAIARALANEPILLFADE 166
Query: 350 ISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIV 404
+ LDS+ T ++++ F + IN G I ++ E L + + DG++V
Sbjct: 167 PTGNLDSANTKRVMDIF---LKINEGGTSIVMVTHERELAELTHRTLEMKDGKVV 218
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 94/229 (41%), Gaps = 40/229 (17%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFA 928
+L G++ PG +TAL+G +G+GK+T+ +L + TGG + + G P Q
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG----KVLLDGEPLVQ---- 85
Query: 929 RISGYCEQNDIHSPFVTV-YESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL 987
+ + +H+ V E L + R TR +EE+ + +
Sbjct: 86 -----YDHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESGAHDFI 139
Query: 988 VGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038
G P N LS QR+ + +A L+ P ++ +D TS LDA V R +
Sbjct: 140 SGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLL 199
Query: 1039 RNTVD-TGRTVVCTIHQPSI-------------DIFEAFDELFLMKRGG 1073
+ + RTV+ Q S+ + E L LM+RGG
Sbjct: 200 YESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG 248
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 10/172 (5%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYITGDIR-ISGYPKKQETFA 928
LN VS G + ++G SGAGK+TL+ L R T G + D + ++ + + T A
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
R Q + + S + LP E+++ + V EL+ L L
Sbjct: 104 R-----RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD 158
Query: 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1040
P + LS Q++R+ IA L +NP ++ D+ TS LD ++ +++
Sbjct: 159 SYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD 208
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTA 377
D +SGGQK+RV + L D+ ++ LD +TT I+ K +I+ G
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLK-DINRRLGLT 216
Query: 378 VISLLQPAPETYNLFDDIILLSDGQIVYQ 406
++ + + D + ++S+G+++ Q
Sbjct: 217 ILLITHEMDVVKRICDCVAVISNGELIEQ 245
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 47/216 (21%), Positives = 97/216 (44%), Gaps = 25/216 (11%)
Query: 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQET 926
+++L G++ RPG +TAL+G +G+GK+T+ +L + TGG + D + + +
Sbjct: 30 VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 89
Query: 927 FARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS 986
+++ ++ + ++ E++ Y T+K +EE+
Sbjct: 90 HRQVAAVGQEPQVFGR--SLQENIAYGL-----------TQKPTMEEITAAAVKSGAHSF 136
Query: 987 LVGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1037
+ GLP + LS QR+ + +A L+ P ++ +D+ TS LDA + V +
Sbjct: 137 ISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQL 196
Query: 1038 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073
+ + + V I Q + + E D + ++ G
Sbjct: 197 LYESPERYSRSVLLITQ-HLSLVEQADHILFLEGGA 231
Score = 35.0 bits (79), Expect = 0.21, Method: Composition-based stats.
Identities = 49/256 (19%), Positives = 99/256 (38%), Gaps = 52/256 (20%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPXXXXXXXXXXXXXXXDPSLKVSGRVTYNGHNMDEF---V 223
+L+ ++ ++PG +T L+GP P+ G++ +G + ++
Sbjct: 32 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRY 88
Query: 224 PERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
R A + Q G +++E +A+ G+ P ++
Sbjct: 89 LHRQVAAVGQEPQVFGR-SLQENIAY------------------------GLTQKPTMEE 123
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPAL 343
AA G + + GL DT V DE +SGGQ++ V ++
Sbjct: 124 ITAAAVKSGAHSFIS--------GLPQGYDTEV-DEAGSQLSGGQRQAVALARALIRKPC 174
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAV-----ISLLQPAPETYNLFDDIILL 398
L +D+ ++ LD+++ Q+ ++ S + + +SL++ A D I+ L
Sbjct: 175 VLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQA-------DHILFL 227
Query: 399 SDGQIVYQGPRELVLE 414
G I G + ++E
Sbjct: 228 EGGAIREGGTHQQLME 243
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 11/190 (5%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYITGDIR-ISGYPKKQETFA 928
LN VS G + ++G SGAGK+TL+ L R T G + D + ++ + + T A
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
R + I F + S + LP E+++ + V EL+ L L
Sbjct: 104 RR----QIGXIFQHF-NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD 158
Query: 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRT 1047
P + LS Q++R+ IA L +NP ++ D+ TS LD ++ +++ G T
Sbjct: 159 SYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLT 216
Query: 1048 VVCTIHQPSI 1057
++ H+ +
Sbjct: 217 ILLITHEXDV 226
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTA 377
D +SGGQK+RV + L D+ ++ LD +TT I+ K +I+ G
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLK-DINRRLGLT 216
Query: 378 VISLLQPAPETYNLFDDIILLSDGQIVYQ 406
++ + + D + ++S+G+++ Q
Sbjct: 217 ILLITHEXDVVKRICDCVAVISNGELIEQ 245
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 97/237 (40%), Gaps = 31/237 (13%)
Query: 839 FEPYSLTFDEVVYSVDMPQQMKLQG---VPEDKLVLLNGVSGAFRPGVLTALMGVSGAGK 895
F PY + F ++ VD+ ++ ++ V + L G R G + ++G +G GK
Sbjct: 322 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 381
Query: 896 TTLMDVLAG--RKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYS 953
TT + +LAG T G + D+ ++ P Q A G TVYE L
Sbjct: 382 TTFVKMLAGVEEPTEGKVEWDLTVAYKP--QYIKAEYEG------------TVYELLSKI 427
Query: 954 AWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVAN 1013
+L NS K + LKPL + V LS + +R+ IA L+ +
Sbjct: 428 DSSKL----NSNFYKTEL--------LKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRD 475
Query: 1014 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070
I +DEP++ LD V R +R+ ++ + + I D L + +
Sbjct: 476 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE 532
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 20/187 (10%)
Query: 880 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGD------IRISGYPKKQETFARISGY 933
+ G++ ++G +G GKTT + +LAG+ + IR + Q F R+
Sbjct: 101 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERL--- 157
Query: 934 CEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMF--IEEVMELVELKPLRQSLVGLP 991
+ +I Y L LP V + R++ ++EV + E+ + L
Sbjct: 158 -KNGEIRPVVKPQYVDL-------LPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLD 209
Query: 992 G-VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1050
++ LS + +R+ IA L+ F DEP+S LD R V R +R + G+ V+
Sbjct: 210 RELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLV 269
Query: 1051 TIHQPSI 1057
H ++
Sbjct: 270 VEHDLAV 276
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 94/229 (41%), Gaps = 40/229 (17%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFA 928
+L G++ PG +TAL+G +G+GK+T+ +L + TGG + D G P Q
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLD----GEPLVQ---- 85
Query: 929 RISGYCEQNDIHSPFVTV-YESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL 987
+ + +H+ V E L + R TR +EE+ + +
Sbjct: 86 -----YDHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESGAHDFI 139
Query: 988 VGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038
G P N L+ QR+ + +A L+ P ++ +D TS LDA V R +
Sbjct: 140 SGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLL 199
Query: 1039 RNTVD-TGRTVVCTIHQPSI-------------DIFEAFDELFLMKRGG 1073
+ + RTV+ Q S+ + E L LM+RGG
Sbjct: 200 YESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG 248
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
Length = 266
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 57/214 (26%), Positives = 95/214 (44%), Gaps = 27/214 (12%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG----YITGDIRISGYPKKQET 926
L+N VS G + A++G +GAGK+TL+ +L G + ++ G S PK
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPK---A 82
Query: 927 FARISGYCEQ-NDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
AR Q +++ PF +V E + + P S+ R+ +++VM + L Q
Sbjct: 83 LARTRAVMRQYSELAFPF-SVSEVI----QMGRAPYGGSQDRQA-LQQVMAQTDCLALAQ 136
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVR 1039
LS +++R+ +A L P +F+DEPTS LD +R +R
Sbjct: 137 R-----DYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLR 191
Query: 1040 N-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
T V C +H ++ A D + L+ +G
Sbjct: 192 QLTRQEPLAVCCVLHDLNLAALYA-DRIMLLAQG 224
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 19/199 (9%)
Query: 881 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCE--QND 938
G AL+G SG+GK+T+ ++ + G I + G+ ++ T A + +
Sbjct: 368 AGKTVALVGRSGSGKSTIASLIT--RFYDIDEGHILMDGHDLREYTLASLRNQVALVSQN 425
Query: 939 IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNG--L 996
+H TV ++ Y+ E E +M M+ + + L + G NG L
Sbjct: 426 VHLFNDTVANNIAYARTEEYSREQIEEAARM--AYAMDFI--NKMDNGLDTIIGENGVLL 481
Query: 997 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TGRTVVCTIH 1053
S QR+R+ IA L+ + I+ +DE TS LD + R ++ +D RT + H
Sbjct: 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESE----RAIQAALDELQKNRTSLVIAH 537
Query: 1054 QPSIDIFEAFDELFLMKRG 1072
+ S E DE+ +++ G
Sbjct: 538 RLS--TIEQADEIVVVEDG 554
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 308 LDICADTMVGDEMRRGV--SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNC 365
+D DT++G+ GV SGGQ++R+ ++ + L +DE ++ LD+ + I
Sbjct: 466 MDNGLDTIIGEN---GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAA 522
Query: 366 FKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 413
+ + N + VI+ T D+I+++ DG IV +G +L
Sbjct: 523 LDE-LQKNRTSLVIA---HRLSTIEQADEIVVVEDGIIVERGTHSELL 566
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 31/174 (17%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARIS 931
LNG++ + G L A++G G GK++L+ L + G + I G A I
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKGSVAYVPQQAWI- 77
Query: 932 GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL---- 987
QND ++ E++ + L P + V++ L P + L
Sbjct: 78 ----QND------SLRENILFGCQLEEP----------YYRSVIQACALLPDLEILPSGD 117
Query: 988 ---VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038
+G GVN LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 118 RTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV 170
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 96/211 (45%), Gaps = 24/211 (11%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGY---PKKQETF 927
+L ++ +PG AL+G +G+GKTT++++L + G I + G K+ +
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM--RFYDVDRGQILVDGIDIRKIKRSSL 427
Query: 928 ARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVE----LKPL 983
G Q+ I TV E+L Y P + E I+E +L +K L
Sbjct: 428 RSSIGIVLQDTILFS-TTVKENLKYGN----PGATDEE-----IKEAAKLTHSDHFIKHL 477
Query: 984 RQSLVGLPGVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1041
+ + NG LS QR+ L I +ANP I+ +DE TS +D + + +
Sbjct: 478 PEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKL 537
Query: 1042 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
++ G+T + H+ ++ + D + +++ G
Sbjct: 538 ME-GKTSIIIAHR--LNTIKNADLIIVLRDG 565
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 81/186 (43%), Gaps = 12/186 (6%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFA 928
+L G+S G + L+G +GAGKTT + +++ + + G +T + ++
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT--VFGKNVVEEPHEVR 87
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
++ Y + Y ++ +LR + + E V E+ L + +
Sbjct: 88 KLISYLPEE------AGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKI- 140
Query: 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1048
V+ S ++L IA L+ NP + +DEPTSGLD A V + ++ G T+
Sbjct: 141 -KDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTI 199
Query: 1049 VCTIHQ 1054
+ + H
Sbjct: 200 LVSSHN 205
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 21/168 (12%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISG-YPKK----QE 925
+L +S G L G++GAGKTTL+++L + +G + + G P K E
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA--TSGTVNLFGKXPGKVGYSAE 93
Query: 926 TFARISGYCEQNDIHS------PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVE 979
T + G+ + + V F S + + +++ E R ++++LV
Sbjct: 94 TVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKS--IGVYQDIDDEIRNE-AHQLLKLVG 150
Query: 980 LKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
Q +G LST +++R+ IA L P ++ +DEP +GLD
Sbjct: 151 XSAKAQQYIGY-----LSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
Score = 36.2 bits (82), Expect = 0.12, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 5/111 (4%)
Query: 303 LKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
LK++G A +G +S G+K+RV + G L +DE + GLD +
Sbjct: 146 LKLVGXSAKAQQYIG-----YLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESL 200
Query: 363 VNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 413
++ A I + E F I+LL DGQ + QG E +L
Sbjct: 201 LSILDSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 79/187 (42%), Gaps = 19/187 (10%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARI 930
+L +S + PG L+G +G+GK+TL+ G+I+I G T +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSWDSITLEQW 92
Query: 931 SGYCEQNDIHSPFVTVYESLF-YSAWLRLPPEVNSETRKMFIEEVMELVELK------PL 983
F + + +F +S R + N+ I +V + V L+ P
Sbjct: 93 ---------RKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPG 143
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043
+ V + G LS ++ + +A +++ I+ +DEP++ LD I+ RT++
Sbjct: 144 KLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFA 203
Query: 1044 TGRTVVC 1050
++C
Sbjct: 204 DCTVILC 210
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD-- 900
S+ + SVD +Q+ + G E L G+ +F GVLT++ GVSG+GK+TL++
Sbjct: 632 SIEIPAIRRSVDPRRQLTVVGAREHNL---RGIDVSFPLGVLTSVTGVSGSGKSTLVNDI 688
Query: 901 ---VLAGRKTG 908
VLA R G
Sbjct: 689 LAAVLANRLNG 699
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 996 LSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1052
LS + +R+ +A EL ++ +DEPT+GL ++ + VD G TV+
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 1053 HQPSIDIFEAFD 1064
H ++D+ + D
Sbjct: 924 H--NLDVIKTSD 933
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 37.7 bits (86), Expect = 0.035, Method: Composition-based stats.
Identities = 44/187 (23%), Positives = 91/187 (48%), Gaps = 25/187 (13%)
Query: 887 LMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP-KKQETFARISGYCEQNDIHSPFVT 945
++G +G+GKTTL+ ++G +G+I I+G +K + R S + + VT
Sbjct: 35 ILGPNGSGKTTLLRAISGLLP---YSGNIFINGMEVRKIRNYIRYS--TNLPEAYEIGVT 89
Query: 946 VYESLFYSAWLRLPPEVNSETRKMFIE--EVMELVELKPLRQSLVGLPGVNGLSTEQRKR 1003
V + ++ L E+ R +F+E + ++L E + LR+ L L S Q
Sbjct: 90 VNDIVY------LYEELKGLDRDLFLEMLKALKLGE-EILRRKLYKL------SAGQSVL 136
Query: 1004 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ-PSIDIFEA 1062
+ ++ L + P I+ +DEP +DA ++ R ++ + G+ + H+ +++++
Sbjct: 137 VRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTHELDMLNLYKE 193
Query: 1063 FDELFLM 1069
+ FL+
Sbjct: 194 YKAYFLV 200
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 996 LSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1052
LS + +R+ +A EL ++ +DEPT+GL A ++ + VD G TV+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 1053 HQPSIDIFEAFDELFLM-----KRGGREVYVG 1079
H ++D+ + D + + RGG+ V VG
Sbjct: 906 H--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 996 LSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1052
LS + +R+ +A EL ++ +DEPT+GL A ++ + VD G TV+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 1053 HQPSIDIFEAFDELFLM-----KRGGREVYVG 1079
H ++D+ + D + + RGG+ V VG
Sbjct: 906 H--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 996 LSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1052
LS + +R+ +A EL ++ +DEPT+GL A ++ + VD G TV+
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 603
Query: 1053 HQPSIDIFEAFDELFLM-----KRGGREVYVG 1079
H ++D+ + D + + RGG+ V VG
Sbjct: 604 H--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 633
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 70/159 (44%), Gaps = 28/159 (17%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFAR 929
+LLN + + G +G GK+TLM +A + + G+P ++E
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQ----------VDGFPTQEECR-- 496
Query: 930 ISGYCEQN-DIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
+ Y E + D +V + +F S T++ ++++E ++
Sbjct: 497 -TVYVEHDIDGTHSDTSVLDFVFESG---------VGTKEAIKDKLIEF----GFTDEMI 542
Query: 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
+P ++ LS + +L +A ++ N I+ +DEPT+ LD
Sbjct: 543 AMP-ISALSGGWKMKLALARAVLRNADILLLDEPTNHLD 580
Score = 33.5 bits (75), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 966 TRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1025
TRK IEE ++ L P +V + GLS Q+ +L +A P +I +DEPT+
Sbjct: 876 TRKE-IEEHCSMLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNY 931
Query: 1026 LD 1027
LD
Sbjct: 932 LD 933
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 886 ALMGVSGAGKTTLMDVLAGR--KTGG--YITGDIRISGYPKKQETFARISGYCEQ 936
A++G +GAGK+TL++VL G T G Y + RI+ KQ FA I + ++
Sbjct: 703 AVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYI--KQHAFAHIESHLDK 755
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1036
LS ++R+ IA+ L+ +P ++ +DEPTS LD A +++
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQ 195
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 33.1 bits (74), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1057
QR RL + I +DEPT GL R +++T++ D G TV+ H +
Sbjct: 471 QRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEV 528
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 996 LSTEQRKRLTIAVELVANPS---IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1052
LS + +R+ +A EL + + +DEPT GL ++ + VD G TV+
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIE 865
Query: 1053 HQPSIDIFEAFDELF-LMKRGGRE 1075
H ++D+ + D + L GG+E
Sbjct: 866 H--NLDVIKNADHIIDLGPEGGKE 887
>pdb|3L39|A Chain A, Crystal Structure Of Putative Phou-Like Phosphate Regulatory
Protein (Bt4638) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.93 A Resolution
Length = 227
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 1019 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1066
MD+ G+++ A IV+ R ++G+ + IH+ +I+I +A DEL
Sbjct: 103 MDDVIDGINSSAKRIVIYNPRPISESGKELSRLIHEEAINIGKAMDEL 150
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 908
L +S +P V+ A++G+ GK+ LM+ LAG+K G
Sbjct: 28 LKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKG 64
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 966 TRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1025
TRK IEE + L P +V + GLS Q+ +L +A P +I +DEPT+
Sbjct: 870 TRKE-IEEHCSXLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNY 925
Query: 1026 LD 1027
LD
Sbjct: 926 LD 927
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 886 ALMGVSGAGKTTLMDVLAGR--KTGG--YITGDIRISGYPKKQETFARISGYCEQ 936
A++G +GAGK+TL++VL G T G Y + RI+ KQ FA I + ++
Sbjct: 697 AVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYI--KQHAFAHIESHLDK 749
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 966 TRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1025
TRK IEE + L P +V + GLS Q+ +L +A P +I +DEPT+
Sbjct: 876 TRKE-IEEHCSXLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNY 931
Query: 1026 LD 1027
LD
Sbjct: 932 LD 933
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 886 ALMGVSGAGKTTLMDVLAGR--KTGG--YITGDIRISGYPKKQETFARISGYCEQ 936
A++G +GAGK+TL++VL G T G Y + RI+ KQ FA I + ++
Sbjct: 703 AVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYI--KQHAFAHIESHLDK 755
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 996 LSTEQRKRLTIAVELVANP---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1052
LS + +R+ +A EL + ++ +DEPT+GL + R + VD G TV+
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVE 790
Query: 1053 HQ 1054
H+
Sbjct: 791 HK 792
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 23/167 (13%)
Query: 861 LQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGY 920
L G P +L ++ G L A+ G +GAGKT+L+ ++ G G I+ SG
Sbjct: 48 LLGTP-----VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG- 99
Query: 921 PKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL 980
RIS +C QN P T+ E++ ++ S + +EE ++ +
Sbjct: 100 --------RIS-FCSQNSWIMP-GTIKENIIGVSYDEY--RYRSVIKACQLEE--DISKF 145
Query: 981 KPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
++G G+ LS QR R+++A + + + +D P LD
Sbjct: 146 AEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 23/167 (13%)
Query: 861 LQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGY 920
L G P +L ++ G L A+ G +GAGKT+L+ ++ G G I+ SG
Sbjct: 48 LLGTP-----VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG- 99
Query: 921 PKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL 980
RIS +C QN P T+ E++ ++ S + +EE ++ +
Sbjct: 100 --------RIS-FCSQNSWIMP-GTIKENIIGVSYDEY--RYRSVIKACQLEE--DISKF 145
Query: 981 KPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
++G G+ LS QR R+++A + + + +D P LD
Sbjct: 146 AEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>pdb|2B8W|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B8W|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B92|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2B92|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2BC9|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Non-Hydrolysable Gtp Analogue Gppnhp
pdb|2D4H|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
pdb|2D4H|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
Length = 328
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 875 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 908
+S +P V+ A++G+ GK+ LM+ LAG+K G
Sbjct: 42 LSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKG 75
>pdb|3AU2|A Chain A, Dna Polymerase X From Thermus Thermophilus Hb8 Complexed
With Ca-Dgtp
pdb|3AU6|A Chain A, Dna Polymerase X From Thermus Thermophilus Hb8 Ternary
Complex With PrimerTEMPLATE DNA AND DDGTP
pdb|3AUO|A Chain A, Dna Polymerase X From Thermus Thermophilus Hb8 Ternary
Complex With 1- Nt Gapped Dna And Ddgtp
pdb|3AUO|B Chain B, Dna Polymerase X From Thermus Thermophilus Hb8 Ternary
Complex With 1- Nt Gapped Dna And Ddgtp
Length = 575
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 25/148 (16%)
Query: 894 GKTTLMDVLAGRKTGGYI-------TGDIRISGYPKKQETFARISGYCEQNDIHSPFVTV 946
G+ TL ++ KT GY + +R++G P +E R+ N+ H P
Sbjct: 350 GQNTLEELWEAAKTMGYRYLAVTDHSPAVRVAGGPSPEEALKRVGEIRRFNETHGP---- 405
Query: 947 YESLFYSAWLRLPPEVNSETRKMFIEEV-MELVELKPLRQSLVGLPGVNGLSTEQRKRLT 1005
L A + + P+ + + E+ + LV + S LP +Q KRL
Sbjct: 406 -PYLLAGAEVDIHPDGTLDYPDWVLRELDLVLVSV----HSRFNLP-----KADQTKRLL 455
Query: 1006 IAVELVANPSIIFMDEPTSGLDARAAAI 1033
A+E NP + + PT+ L R A I
Sbjct: 456 KALE---NPFVHVLAHPTARLLGRRAPI 480
>pdb|3B0X|A Chain A, K263a Mutant Of Polx From Thermus Thermophilus Hb8 Complexed
With Ca- Dgtp
Length = 575
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 25/148 (16%)
Query: 894 GKTTLMDVLAGRKTGGYI-------TGDIRISGYPKKQETFARISGYCEQNDIHSPFVTV 946
G+ TL ++ KT GY + +R++G P +E R+ N+ H P
Sbjct: 350 GQNTLEELWEAAKTMGYRYLAVTDHSPAVRVAGGPSPEEALKRVGEIRRFNETHGP---- 405
Query: 947 YESLFYSAWLRLPPEVNSETRKMFIEEV-MELVELKPLRQSLVGLPGVNGLSTEQRKRLT 1005
L A + + P+ + + E+ + LV + S LP +Q KRL
Sbjct: 406 -PYLLAGAEVDIHPDGTLDYPDWVLRELDLVLVSV----HSRFNLP-----KADQTKRLL 455
Query: 1006 IAVELVANPSIIFMDEPTSGLDARAAAI 1033
A+E NP + + PT+ L R A I
Sbjct: 456 KALE---NPFVHVLAHPTARLLGRRAPI 480
>pdb|3B0Y|A Chain A, K263d Mutant Of Polx From Thermus Thermophilus Hb8 Complexed
With Ca- Dgtp
Length = 575
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 25/148 (16%)
Query: 894 GKTTLMDVLAGRKTGGYI-------TGDIRISGYPKKQETFARISGYCEQNDIHSPFVTV 946
G+ TL ++ KT GY + +R++G P +E R+ N+ H P
Sbjct: 350 GQNTLEELWEAAKTMGYRYLAVTDHSPAVRVAGGPSPEEALKRVGEIRRFNETHGP---- 405
Query: 947 YESLFYSAWLRLPPEVNSETRKMFIEEV-MELVELKPLRQSLVGLPGVNGLSTEQRKRLT 1005
L A + + P+ + + E+ + LV + S LP +Q KRL
Sbjct: 406 -PYLLAGAEVDIHPDGTLDYPDWVLRELDLVLVSV----HSRFNLP-----KADQTKRLL 455
Query: 1006 IAVELVANPSIIFMDEPTSGLDARAAAI 1033
A+E NP + + PT+ L R A I
Sbjct: 456 KALE---NPFVHVLAHPTARLLGRRAPI 480
>pdb|2CVF|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVF|B Chain B, Crystal Structure Of The Radb Recombinase
pdb|2CVH|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVH|B Chain B, Crystal Structure Of The Radb Recombinase
Length = 220
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 875 VSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRK 906
+ G F PGVLT + G +GKTTL +L+G+K
Sbjct: 13 LGGGFAPGVLTQVYGPYASGKTTLALQTGLLSGKK 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,529,032
Number of Sequences: 62578
Number of extensions: 1233204
Number of successful extensions: 3045
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2742
Number of HSP's gapped (non-prelim): 249
length of query: 1106
length of database: 14,973,337
effective HSP length: 109
effective length of query: 997
effective length of database: 8,152,335
effective search space: 8127877995
effective search space used: 8127877995
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)