Query 001291
Match_columns 1106
No_of_seqs 692 out of 5704
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 20:34:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001291.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001291hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 3.8E-75 1.3E-79 769.7 47.2 217 842-1083 1075-1301(1321)
2 3g5u_A MCG1178, multidrug resi 100.0 4.7E-69 1.6E-73 709.9 54.8 217 842-1083 1029-1255(1284)
3 3bk7_A ABC transporter ATP-bin 100.0 1.4E-58 4.9E-63 563.8 33.8 203 843-1084 357-561 (607)
4 1yqt_A RNAse L inhibitor; ATP- 100.0 1.3E-58 4.3E-63 559.3 31.4 203 843-1084 287-491 (538)
5 3ozx_A RNAse L inhibitor; ATP 100.0 4.7E-57 1.6E-61 543.8 32.4 215 843-1094 269-485 (538)
6 2iw3_A Elongation factor 3A; a 100.0 7.3E-56 2.5E-60 555.1 41.5 184 165-413 448-634 (986)
7 3ux8_A Excinuclease ABC, A sub 100.0 1.1E-55 3.8E-60 550.8 37.7 215 164-413 30-297 (670)
8 3j16_B RLI1P; ribosome recycli 100.0 1.8E-55 6.1E-60 535.3 31.9 191 870-1085 361-558 (608)
9 3tui_C Methionine import ATP-b 100.0 2.2E-42 7.6E-47 392.5 27.5 219 843-1082 24-249 (366)
10 3tui_C Methionine import ATP-b 100.0 2.4E-42 8.3E-47 392.2 27.8 207 164-413 40-252 (366)
11 3tif_A Uncharacterized ABC tra 100.0 3.9E-42 1.3E-46 372.7 26.9 221 844-1083 2-231 (235)
12 3rlf_A Maltose/maltodextrin im 100.0 8.3E-42 2.8E-46 390.4 27.4 215 844-1083 4-220 (381)
13 3fvq_A Fe(3+) IONS import ATP- 100.0 7.4E-42 2.5E-46 388.3 26.8 207 165-414 17-228 (359)
14 3rlf_A Maltose/maltodextrin im 100.0 1.1E-41 3.7E-46 389.4 28.3 207 165-414 16-223 (381)
15 3pih_A Uvrabc system protein A 100.0 1.7E-41 5.8E-46 425.8 32.5 198 871-1083 599-899 (916)
16 3gfo_A Cobalt import ATP-bindi 100.0 5.7E-42 2E-46 378.6 24.6 217 843-1083 7-230 (275)
17 3fvq_A Fe(3+) IONS import ATP- 100.0 7.3E-42 2.5E-46 388.4 25.9 216 843-1083 4-225 (359)
18 2pcj_A ABC transporter, lipopr 100.0 1.8E-41 6E-46 365.1 26.4 211 844-1080 5-222 (224)
19 2olj_A Amino acid ABC transpor 100.0 2.7E-41 9.1E-46 371.1 27.6 215 843-1082 24-244 (263)
20 1b0u_A Histidine permease; ABC 100.0 3.1E-41 1E-45 371.5 26.8 214 844-1082 7-238 (262)
21 3gfo_A Cobalt import ATP-bindi 100.0 4.4E-41 1.5E-45 371.5 26.4 207 165-414 21-233 (275)
22 1vpl_A ABC transporter, ATP-bi 100.0 5.8E-41 2E-45 367.3 26.7 215 843-1082 15-231 (256)
23 3tif_A Uncharacterized ABC tra 100.0 5.9E-41 2E-45 363.4 25.9 207 165-412 18-232 (235)
24 2yyz_A Sugar ABC transporter, 100.0 8E-41 2.7E-45 381.3 27.7 207 165-414 16-223 (359)
25 1g6h_A High-affinity branched- 100.0 3.8E-41 1.3E-45 370.2 24.2 219 843-1083 7-239 (257)
26 2r6f_A Excinuclease ABC subuni 100.0 2E-40 6.7E-45 411.9 33.5 196 871-1082 639-938 (972)
27 1ji0_A ABC transporter; ATP bi 100.0 8.4E-41 2.9E-45 363.6 25.7 214 843-1082 6-224 (240)
28 2olj_A Amino acid ABC transpor 100.0 2.2E-40 7.6E-45 363.8 29.1 206 165-414 37-248 (263)
29 1z47_A CYSA, putative ABC-tran 100.0 6.2E-41 2.1E-45 381.2 25.0 217 843-1083 14-232 (355)
30 4g1u_C Hemin import ATP-bindin 100.0 1.2E-40 4.2E-45 367.0 26.6 204 165-413 24-236 (266)
31 1z47_A CYSA, putative ABC-tran 100.0 1.1E-40 3.6E-45 379.3 26.8 207 165-414 28-235 (355)
32 2yyz_A Sugar ABC transporter, 100.0 8.2E-41 2.8E-45 381.2 25.8 215 844-1083 4-220 (359)
33 2it1_A 362AA long hypothetical 100.0 9.9E-41 3.4E-45 381.0 26.4 215 844-1083 4-220 (362)
34 4g1u_C Hemin import ATP-bindin 100.0 8.3E-41 2.8E-45 368.4 24.8 224 843-1093 11-246 (266)
35 2pcj_A ABC transporter, lipopr 100.0 1.6E-40 5.6E-45 357.5 26.4 200 165-409 17-223 (224)
36 1g29_1 MALK, maltose transport 100.0 2.5E-40 8.6E-45 379.8 28.9 207 165-414 16-229 (372)
37 2it1_A 362AA long hypothetical 100.0 1.5E-40 5.1E-45 379.5 26.7 207 165-414 16-223 (362)
38 1g29_1 MALK, maltose transport 100.0 1.7E-40 5.7E-45 381.3 27.3 215 844-1083 4-226 (372)
39 1b0u_A Histidine permease; ABC 100.0 1.8E-40 6.2E-45 365.4 26.2 206 165-414 19-242 (262)
40 1v43_A Sugar-binding transport 100.0 1.4E-40 4.8E-45 381.0 25.8 207 165-414 24-231 (372)
41 1v43_A Sugar-binding transport 100.0 1.5E-40 5.1E-45 380.8 25.5 215 844-1083 12-228 (372)
42 1vpl_A ABC transporter, ATP-bi 100.0 5.6E-40 1.9E-44 359.5 27.5 206 165-414 28-235 (256)
43 1oxx_K GLCV, glucose, ABC tran 100.0 1.1E-40 3.7E-45 380.6 22.6 215 844-1083 4-227 (353)
44 1oxx_K GLCV, glucose, ABC tran 100.0 1.7E-40 5.9E-45 378.9 23.7 205 167-414 20-230 (353)
45 3d31_A Sulfate/molybdate ABC t 100.0 2E-40 6.9E-45 376.9 23.7 201 167-413 15-216 (348)
46 2vf7_A UVRA2, excinuclease ABC 100.0 9.5E-40 3.2E-44 406.8 31.7 107 969-1082 708-823 (842)
47 1g6h_A High-affinity branched- 100.0 3.3E-40 1.1E-44 362.6 23.0 216 165-411 20-239 (257)
48 1ji0_A ABC transporter; ATP bi 100.0 8.1E-40 2.8E-44 355.8 25.1 204 165-413 19-227 (240)
49 3d31_A Sulfate/molybdate ABC t 100.0 3.1E-40 1E-44 375.4 22.1 210 844-1082 2-213 (348)
50 2d2e_A SUFC protein; ABC-ATPas 100.0 7.6E-40 2.6E-44 358.3 23.6 219 844-1082 4-229 (250)
51 2yz2_A Putative ABC transporte 100.0 7.7E-40 2.6E-44 361.4 23.7 218 844-1082 3-223 (266)
52 2onk_A Molybdate/tungstate ABC 100.0 6.8E-40 2.3E-44 355.6 22.6 209 844-1082 2-212 (240)
53 2ihy_A ABC transporter, ATP-bi 100.0 5.1E-40 1.8E-44 364.3 21.4 229 843-1093 21-261 (279)
54 2ygr_A Uvrabc system protein A 100.0 5.7E-39 1.9E-43 400.4 33.3 197 871-1083 657-957 (993)
55 3nh6_A ATP-binding cassette SU 100.0 4.7E-40 1.6E-44 367.7 20.4 213 842-1083 52-274 (306)
56 2onk_A Molybdate/tungstate ABC 100.0 2E-39 6.8E-44 351.9 23.2 202 167-414 14-216 (240)
57 2zu0_C Probable ATP-dependent 100.0 5E-39 1.7E-43 354.8 26.3 221 843-1082 20-250 (267)
58 2nq2_C Hypothetical ABC transp 100.0 1.1E-38 3.7E-43 349.1 27.5 208 844-1083 5-214 (253)
59 3nh6_A ATP-binding cassette SU 100.0 3.4E-39 1.2E-43 360.8 23.8 201 165-414 67-277 (306)
60 2qi9_C Vitamin B12 import ATP- 100.0 6.1E-39 2.1E-43 349.8 22.8 195 871-1083 15-219 (249)
61 2ff7_A Alpha-hemolysin translo 100.0 5.6E-39 1.9E-43 350.4 22.4 213 842-1082 6-228 (247)
62 2yz2_A Putative ABC transporte 100.0 6.7E-39 2.3E-43 353.9 21.0 205 165-414 20-227 (266)
63 2ixe_A Antigen peptide transpo 100.0 6.1E-39 2.1E-43 354.7 19.9 215 843-1082 16-241 (271)
64 1sgw_A Putative ABC transporte 100.0 2.1E-39 7.2E-44 345.1 15.6 201 843-1075 10-210 (214)
65 2ihy_A ABC transporter, ATP-bi 100.0 1.3E-38 4.4E-43 353.1 21.1 209 165-413 34-251 (279)
66 2d2e_A SUFC protein; ABC-ATPas 100.0 5.6E-38 1.9E-42 343.5 22.7 206 165-411 16-230 (250)
67 2ff7_A Alpha-hemolysin translo 100.0 7.4E-38 2.5E-42 341.5 23.3 200 165-413 22-231 (247)
68 2nq2_C Hypothetical ABC transp 100.0 2.4E-37 8.2E-42 338.5 26.8 198 165-413 18-216 (253)
69 1mv5_A LMRA, multidrug resista 100.0 1.3E-38 4.4E-43 347.3 16.0 211 844-1082 2-222 (243)
70 2zu0_C Probable ATP-dependent 100.0 3E-37 1E-41 340.7 25.2 221 165-422 33-261 (267)
71 2qi9_C Vitamin B12 import ATP- 100.0 1E-37 3.5E-42 340.1 20.4 198 166-413 14-221 (249)
72 2ixe_A Antigen peptide transpo 100.0 8.5E-38 2.9E-42 345.6 19.7 209 165-414 32-245 (271)
73 2ghi_A Transport protein; mult 100.0 1.1E-37 3.8E-42 342.7 20.5 212 843-1082 17-238 (260)
74 2pjz_A Hypothetical protein ST 100.0 2.1E-37 7.2E-42 340.2 21.8 207 844-1082 2-211 (263)
75 2pjz_A Hypothetical protein ST 100.0 4.1E-37 1.4E-41 337.8 21.9 194 165-413 18-214 (263)
76 1mv5_A LMRA, multidrug resista 100.0 1.2E-37 4.1E-42 339.6 15.9 202 165-414 15-226 (243)
77 2ghi_A Transport protein; mult 100.0 1E-36 3.5E-41 335.1 22.2 200 165-414 33-242 (260)
78 3b5x_A Lipid A export ATP-bind 100.0 4.9E-36 1.7E-40 367.6 29.0 214 842-1082 340-563 (582)
79 2pze_A Cystic fibrosis transme 100.0 1.3E-36 4.5E-41 328.2 20.9 201 843-1082 6-214 (229)
80 3gd7_A Fusion complex of cysti 100.0 3.5E-37 1.2E-41 355.1 17.3 212 843-1083 19-239 (390)
81 3gd7_A Fusion complex of cysti 100.0 3.5E-37 1.2E-41 355.1 17.3 200 165-414 34-242 (390)
82 2cbz_A Multidrug resistance-as 100.0 2.3E-36 7.8E-41 327.9 20.5 200 844-1082 4-213 (237)
83 3qf4_B Uncharacterized ABC tra 100.0 2.2E-36 7.6E-41 371.2 23.0 213 842-1083 353-575 (598)
84 1sgw_A Putative ABC transporte 100.0 8E-37 2.7E-41 325.2 15.4 188 166-403 23-210 (214)
85 3qf4_A ABC transporter, ATP-bi 100.0 2.9E-36 1E-40 369.1 21.9 214 842-1083 340-563 (587)
86 2yl4_A ATP-binding cassette SU 100.0 6.4E-36 2.2E-40 367.5 24.3 218 843-1084 340-568 (595)
87 4a82_A Cystic fibrosis transme 100.0 2.6E-36 8.7E-41 369.5 20.1 214 842-1083 338-561 (578)
88 2pze_A Cystic fibrosis transme 100.0 8.9E-36 3E-40 321.7 19.8 196 165-413 21-217 (229)
89 3b60_A Lipid A export ATP-bind 100.0 9.2E-36 3.2E-40 365.1 21.7 213 843-1082 341-563 (582)
90 2cbz_A Multidrug resistance-as 100.0 6.9E-36 2.4E-40 324.1 17.3 199 165-414 18-217 (237)
91 4a82_A Cystic fibrosis transme 100.0 1.2E-35 4.2E-40 363.4 21.6 208 165-414 354-564 (578)
92 2yl4_A ATP-binding cassette SU 100.0 1.8E-35 6.1E-40 363.5 22.8 204 165-414 357-570 (595)
93 3qf4_A ABC transporter, ATP-bi 100.0 1.8E-35 6E-40 362.2 22.1 208 165-414 356-566 (587)
94 3b5x_A Lipid A export ATP-bind 100.0 4.5E-35 1.5E-39 359.0 22.3 202 165-414 356-567 (582)
95 3b60_A Lipid A export ATP-bind 100.0 5E-35 1.7E-39 358.6 21.2 202 165-414 356-567 (582)
96 3qf4_B Uncharacterized ABC tra 100.0 2.7E-35 9.4E-40 361.5 18.6 208 165-414 368-578 (598)
97 4f4c_A Multidrug resistance pr 100.0 1.8E-34 6.1E-39 381.8 27.1 214 843-1083 415-638 (1321)
98 2bbs_A Cystic fibrosis transme 100.0 1E-34 3.6E-39 323.0 18.4 197 843-1083 40-244 (290)
99 3g5u_A MCG1178, multidrug resi 100.0 3.8E-34 1.3E-38 377.8 23.3 215 842-1083 386-610 (1284)
100 2bbs_A Cystic fibrosis transme 100.0 5.6E-34 1.9E-38 317.1 18.3 194 166-413 52-246 (290)
101 3bk7_A ABC transporter ATP-bin 100.0 6.8E-31 2.3E-35 320.2 20.1 191 167-414 371-563 (607)
102 1yqt_A RNAse L inhibitor; ATP- 100.0 9.3E-31 3.2E-35 316.0 18.6 191 167-414 301-493 (538)
103 3ozx_A RNAse L inhibitor; ATP 100.0 2.2E-30 7.7E-35 311.8 19.5 192 167-413 283-476 (538)
104 3j16_B RLI1P; ribosome recycli 100.0 5.4E-30 1.8E-34 311.6 19.6 193 165-414 360-559 (608)
105 1tf7_A KAIC; homohexamer, hexa 100.0 1.1E-32 3.6E-37 334.1 -9.0 154 876-1072 275-443 (525)
106 2iw3_A Elongation factor 3A; a 100.0 3.8E-29 1.3E-33 313.9 22.0 194 843-1082 435-631 (986)
107 3ux8_A Excinuclease ABC, A sub 100.0 1.5E-29 5.1E-34 315.3 14.2 205 870-1083 32-295 (670)
108 2r6f_A Excinuclease ABC subuni 99.9 3.6E-25 1.2E-29 275.5 17.7 107 299-413 825-941 (972)
109 3pih_A Uvrabc system protein A 99.9 1.6E-24 5.4E-29 272.4 23.0 109 298-414 784-902 (916)
110 2ygr_A Uvrabc system protein A 99.9 1.1E-24 3.6E-29 272.3 17.5 108 299-414 843-960 (993)
111 2vf7_A UVRA2, excinuclease ABC 99.9 7.9E-25 2.7E-29 272.9 16.3 108 298-413 709-826 (842)
112 2npi_A Protein CLP1; CLP1-PCF1 99.9 2.2E-27 7.6E-32 280.1 -6.8 197 874-1096 130-352 (460)
113 4aby_A DNA repair protein RECN 99.9 2.2E-24 7.5E-29 254.1 16.2 218 870-1093 49-398 (415)
114 2npi_A Protein CLP1; CLP1-PCF1 99.9 1E-26 3.5E-31 274.4 -5.6 186 169-413 129-337 (460)
115 4aby_A DNA repair protein RECN 99.9 3.2E-23 1.1E-27 244.2 15.4 237 164-407 47-381 (415)
116 3b85_A Phosphate starvation-in 99.9 2.4E-26 8.3E-31 243.6 -13.4 172 868-1100 12-186 (208)
117 4gp7_A Metallophosphoesterase; 99.9 1.5E-23 5.1E-28 215.9 2.2 150 874-1065 1-167 (171)
118 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 6.9E-22 2.4E-26 227.9 16.1 81 994-1077 278-364 (365)
119 1e69_A Chromosome segregation 99.9 6E-22 2E-26 225.1 13.6 86 994-1082 218-309 (322)
120 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 1.2E-20 4E-25 217.6 17.2 81 322-405 278-364 (365)
121 3b85_A Phosphate starvation-in 99.8 1.3E-23 4.5E-28 222.6 -7.5 159 163-401 11-170 (208)
122 1tq4_A IIGP1, interferon-induc 99.8 6.3E-23 2.1E-27 237.9 -7.3 172 165-396 36-248 (413)
123 1tq4_A IIGP1, interferon-induc 99.8 3.7E-23 1.3E-27 239.7 -9.4 170 870-1067 37-248 (413)
124 1znw_A Guanylate kinase, GMP k 99.8 4.6E-24 1.6E-28 226.9 -16.8 185 868-1074 8-206 (207)
125 1ye8_A Protein THEP1, hypothet 99.8 2.1E-21 7.3E-26 200.8 3.1 148 884-1080 2-162 (178)
126 1e69_A Chromosome segregation 99.8 1.6E-20 5.4E-25 213.3 9.1 86 322-411 218-310 (322)
127 2v9p_A Replication protein E1; 99.8 3.1E-23 1.1E-27 231.0 -14.4 158 165-419 113-271 (305)
128 4gp7_A Metallophosphoesterase; 99.8 7.5E-21 2.6E-25 195.7 3.7 147 170-390 1-164 (171)
129 1ye8_A Protein THEP1, hypothet 99.8 5.2E-21 1.8E-25 197.9 0.4 149 180-405 2-159 (178)
130 2v9p_A Replication protein E1; 99.8 6.8E-23 2.3E-27 228.2 -20.6 160 843-1081 101-261 (305)
131 3b9q_A Chloroplast SRP recepto 99.8 2.3E-20 7.8E-25 209.1 -1.4 172 872-1072 90-282 (302)
132 3b9q_A Chloroplast SRP recepto 99.8 2.1E-20 7.1E-25 209.4 -2.1 174 168-403 90-284 (302)
133 3sop_A Neuronal-specific septi 99.8 2.6E-20 8.9E-25 205.5 -2.9 145 180-382 4-148 (270)
134 1z6g_A Guanylate kinase; struc 99.7 2.3E-22 7.9E-27 215.4 -19.6 178 870-1067 11-205 (218)
135 3sop_A Neuronal-specific septi 99.7 1.7E-20 5.9E-25 206.9 -6.1 148 884-1056 4-151 (270)
136 2pt7_A CAG-ALFA; ATPase, prote 99.7 1.8E-19 6.1E-24 204.6 1.7 131 871-1073 160-291 (330)
137 3qkt_A DNA double-strand break 99.7 1.8E-17 6E-22 189.6 18.0 75 994-1070 247-327 (339)
138 1znw_A Guanylate kinase, GMP k 99.7 3.1E-21 1.1E-25 205.0 -12.9 184 165-399 9-202 (207)
139 2og2_A Putative signal recogni 99.7 1.3E-19 4.3E-24 206.6 -1.0 170 873-1072 148-339 (359)
140 2o5v_A DNA replication and rep 99.7 5.9E-18 2E-22 193.3 12.3 81 323-412 265-354 (359)
141 2dpy_A FLII, flagellum-specifi 99.7 4.8E-20 1.7E-24 216.4 -5.5 180 164-412 144-342 (438)
142 2og2_A Putative signal recogni 99.7 2.4E-19 8.2E-24 204.4 -0.7 173 169-403 148-341 (359)
143 1z6g_A Guanylate kinase; struc 99.7 1.6E-21 5.4E-26 208.9 -17.7 155 165-370 10-174 (218)
144 2dpy_A FLII, flagellum-specifi 99.7 1E-19 3.6E-24 213.6 -5.6 174 869-1081 145-339 (438)
145 2o5v_A DNA replication and rep 99.7 6.3E-18 2.1E-22 193.0 8.9 80 995-1083 265-353 (359)
146 1cr0_A DNA primase/helicase; R 99.7 4.7E-18 1.6E-22 190.7 4.1 182 870-1072 23-235 (296)
147 3aez_A Pantothenate kinase; tr 99.7 2.6E-19 8.8E-24 201.4 -7.0 128 170-356 81-209 (312)
148 2pt7_A CAG-ALFA; ATPase, prote 99.7 4.5E-18 1.5E-22 193.1 1.1 132 167-403 160-292 (330)
149 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 1.3E-16 4.3E-21 159.2 10.5 75 994-1070 56-136 (148)
150 3qkt_A DNA double-strand break 99.7 3.6E-16 1.2E-20 178.7 15.6 78 322-402 247-332 (339)
151 2o8b_B DNA mismatch repair pro 99.7 3.5E-18 1.2E-22 218.7 -1.3 153 869-1076 769-930 (1022)
152 1cr0_A DNA primase/helicase; R 99.7 1.4E-17 4.7E-22 186.9 3.1 186 164-403 21-237 (296)
153 4ad8_A DNA repair protein RECN 99.6 2.1E-16 7.2E-21 190.9 10.7 76 322-401 395-473 (517)
154 3aez_A Pantothenate kinase; tr 99.6 9.8E-19 3.3E-23 196.7 -10.1 157 879-1070 87-243 (312)
155 2ehv_A Hypothetical protein PH 99.6 1.9E-17 6.4E-22 180.5 0.4 162 877-1070 25-206 (251)
156 3thx_A DNA mismatch repair pro 99.6 4E-16 1.4E-20 197.3 12.5 149 869-1082 649-809 (934)
157 2jeo_A Uridine-cytidine kinase 99.6 1.6E-17 5.4E-22 181.2 -1.1 156 867-1055 10-165 (245)
158 2jeo_A Uridine-cytidine kinase 99.6 3.8E-17 1.3E-21 178.1 1.9 177 163-414 10-187 (245)
159 2obl_A ESCN; ATPase, hydrolase 99.6 3.4E-17 1.2E-21 186.6 -1.0 174 869-1082 59-251 (347)
160 2eyu_A Twitching motility prot 99.6 1.1E-16 3.8E-21 175.6 2.2 130 871-1070 16-146 (261)
161 4a74_A DNA repair and recombin 99.6 8.7E-17 3E-21 172.9 0.3 152 877-1072 20-200 (231)
162 2obl_A ESCN; ATPase, hydrolase 99.6 7.5E-17 2.6E-21 183.8 -0.6 181 164-412 58-253 (347)
163 3thx_B DNA mismatch repair pro 99.6 9E-16 3.1E-20 193.5 8.5 143 868-1064 659-803 (918)
164 3thx_A DNA mismatch repair pro 99.6 1E-15 3.6E-20 193.5 8.3 89 322-412 720-811 (934)
165 1tf7_A KAIC; homohexamer, hexa 99.6 1.5E-15 5.2E-20 183.7 8.6 155 172-402 275-444 (525)
166 1ewq_A DNA mismatch repair pro 99.6 1.4E-15 4.7E-20 189.3 5.3 128 869-1056 566-699 (765)
167 3asz_A Uridine kinase; cytidin 99.5 1.8E-17 6.3E-22 176.1 -10.4 145 879-1055 3-161 (211)
168 4a74_A DNA repair and recombin 99.5 4.2E-16 1.4E-20 167.5 -0.5 154 173-402 20-201 (231)
169 3asz_A Uridine kinase; cytidin 99.5 1.1E-16 3.7E-21 170.2 -5.8 145 175-383 3-160 (211)
170 2o8b_B DNA mismatch repair pro 99.5 6.2E-16 2.1E-20 198.1 -1.0 160 165-411 769-939 (1022)
171 1wb9_A DNA mismatch repair pro 99.5 3.2E-15 1.1E-19 187.0 3.6 143 869-1066 595-739 (800)
172 1rj9_A FTSY, signal recognitio 99.5 8.7E-16 3E-20 171.9 -1.5 147 881-1056 101-259 (304)
173 2qnr_A Septin-2, protein NEDD5 99.5 6.4E-16 2.2E-20 173.4 -2.6 157 867-1056 9-168 (301)
174 1f2t_B RAD50 ABC-ATPase; DNA d 99.5 3.1E-14 1.1E-18 141.9 9.8 80 321-403 55-142 (148)
175 2i3b_A HCR-ntpase, human cance 99.5 5.2E-17 1.8E-21 169.3 -11.5 158 178-406 1-168 (189)
176 1pzn_A RAD51, DNA repair and r 99.5 7.8E-16 2.7E-20 176.1 -3.3 168 166-408 118-309 (349)
177 2i3b_A HCR-ntpase, human cance 99.5 1.4E-16 4.6E-21 166.1 -8.9 172 882-1093 1-185 (189)
178 2eyu_A Twitching motility prot 99.5 3.1E-15 1.1E-19 164.0 1.3 133 166-400 15-147 (261)
179 1w1w_A Structural maintenance 99.5 5.3E-14 1.8E-18 166.1 11.9 74 323-399 333-410 (430)
180 2ehv_A Hypothetical protein PH 99.5 1.7E-15 5.8E-20 165.0 -1.1 169 167-399 18-206 (251)
181 1pzn_A RAD51, DNA repair and r 99.5 1.5E-15 5E-20 173.9 -2.0 142 872-1056 120-287 (349)
182 2w0m_A SSO2452; RECA, SSPF, un 99.5 6.3E-15 2.1E-19 158.4 2.5 167 870-1072 10-192 (235)
183 1rj9_A FTSY, signal recognitio 99.5 1.7E-15 5.8E-20 169.6 -2.2 148 177-384 101-257 (304)
184 3thx_B DNA mismatch repair pro 99.5 2.6E-14 9E-19 180.2 7.9 80 323-405 735-816 (918)
185 2qnr_A Septin-2, protein NEDD5 99.5 1.9E-15 6.5E-20 169.5 -3.0 156 164-385 10-167 (301)
186 3szr_A Interferon-induced GTP- 99.5 1E-15 3.5E-20 187.6 -5.6 165 181-414 48-237 (608)
187 1nlf_A Regulatory protein REPA 99.5 9.8E-14 3.3E-18 154.1 10.6 151 878-1056 26-182 (279)
188 1ewq_A DNA mismatch repair pro 99.5 1.1E-14 3.9E-19 181.0 2.4 132 165-392 566-704 (765)
189 3jvv_A Twitching mobility prot 99.4 8.9E-15 3E-19 167.1 1.0 131 871-1070 114-244 (356)
190 3kta_B Chromosome segregation 99.4 3E-13 1E-17 138.3 10.0 74 994-1070 63-140 (173)
191 1pui_A ENGB, probable GTP-bind 99.4 6.7E-15 2.3E-19 155.7 -2.8 180 844-1047 4-202 (210)
192 2w0m_A SSO2452; RECA, SSPF, un 99.4 2.1E-13 7.3E-18 146.4 8.4 171 165-401 9-192 (235)
193 4ad8_A DNA repair protein RECN 99.4 2.9E-13 9.9E-18 163.4 9.5 75 995-1072 396-473 (517)
194 1nlf_A Regulatory protein REPA 99.4 2.8E-13 9.6E-18 150.4 7.3 153 174-387 26-183 (279)
195 3szr_A Interferon-induced GTP- 99.4 2.7E-14 9.3E-19 175.0 -1.0 141 877-1056 43-197 (608)
196 2qag_C Septin-7; cell cycle, c 99.4 1.6E-14 5.4E-19 168.1 -3.0 163 844-1056 12-178 (418)
197 1wb9_A DNA mismatch repair pro 99.4 5.6E-14 1.9E-18 175.9 1.5 156 165-407 595-751 (800)
198 2qag_B Septin-6, protein NEDD5 99.4 4.3E-14 1.5E-18 163.5 -1.8 174 868-1054 27-218 (427)
199 2cvh_A DNA repair and recombin 99.3 3.5E-12 1.2E-16 135.7 12.5 153 871-1072 8-185 (220)
200 1s96_A Guanylate kinase, GMP k 99.3 3.7E-14 1.3E-18 151.3 -3.2 127 877-1056 11-141 (219)
201 1s96_A Guanylate kinase, GMP k 99.3 6.7E-14 2.3E-18 149.3 -2.5 147 174-416 12-162 (219)
202 1zp6_A Hypothetical protein AT 99.3 2.5E-14 8.5E-19 149.2 -7.1 137 175-368 6-146 (191)
203 3jvv_A Twitching mobility prot 99.3 2.6E-13 8.9E-18 155.0 0.4 59 333-401 188-246 (356)
204 2qag_C Septin-7; cell cycle, c 99.3 4E-13 1.4E-17 156.3 1.9 150 164-383 23-176 (418)
205 1htw_A HI0065; nucleotide-bind 99.3 1.1E-13 3.8E-18 139.7 -3.6 78 165-249 20-97 (158)
206 2bdt_A BH3686; alpha-beta prot 99.3 1.2E-14 4E-19 151.6 -11.2 169 178-412 2-182 (189)
207 2ewv_A Twitching motility prot 99.3 5.6E-13 1.9E-17 153.7 0.6 128 871-1067 127-254 (372)
208 1lw7_A Transcriptional regulat 99.3 2.8E-15 9.6E-20 173.1 -18.7 169 167-398 157-341 (365)
209 1zp6_A Hypothetical protein AT 99.3 1.8E-14 6.2E-19 150.3 -10.9 154 878-1053 5-159 (191)
210 3kta_B Chromosome segregation 99.3 1.1E-11 3.9E-16 126.6 10.2 88 322-413 63-157 (173)
211 2bbw_A Adenylate kinase 4, AK4 99.2 1.4E-13 4.9E-18 149.8 -5.1 163 177-371 26-198 (246)
212 2bdt_A BH3686; alpha-beta prot 99.2 9.1E-15 3.1E-19 152.5 -14.1 170 882-1082 2-180 (189)
213 2cvh_A DNA repair and recombin 99.2 9.6E-12 3.3E-16 132.3 8.6 77 324-401 85-185 (220)
214 2gza_A Type IV secretion syste 99.2 1.5E-12 5.3E-17 149.6 2.1 137 871-1072 164-302 (361)
215 2gza_A Type IV secretion syste 99.2 2.8E-12 9.4E-17 147.5 4.2 79 167-248 164-246 (361)
216 1lw7_A Transcriptional regulat 99.2 5.4E-14 1.8E-18 162.4 -11.9 166 872-1070 158-342 (365)
217 3auy_A DNA double-strand break 99.2 2.2E-11 7.4E-16 140.8 9.6 76 995-1073 280-362 (371)
218 1n0w_A DNA repair protein RAD5 99.2 1.1E-11 3.8E-16 134.0 6.3 151 877-1072 19-209 (243)
219 1nij_A Hypothetical protein YJ 99.2 5.5E-15 1.9E-19 167.2 -20.6 156 883-1056 5-190 (318)
220 2f1r_A Molybdopterin-guanine d 99.2 1.8E-13 6E-18 140.1 -7.6 112 179-345 3-125 (171)
221 1pui_A ENGB, probable GTP-bind 99.2 2.9E-13 1E-17 143.0 -6.3 66 301-371 131-198 (210)
222 2rcn_A Probable GTPase ENGC; Y 99.2 5.6E-12 1.9E-16 143.1 2.5 121 168-338 206-328 (358)
223 2qag_B Septin-6, protein NEDD5 99.2 2.4E-12 8.2E-17 149.0 -0.6 161 168-368 30-203 (427)
224 2bbw_A Adenylate kinase 4, AK4 99.2 8.4E-14 2.9E-18 151.6 -12.4 147 881-1045 26-200 (246)
225 1w1w_A Structural maintenance 99.1 5.2E-11 1.8E-15 140.4 9.9 75 995-1071 333-411 (430)
226 2yhs_A FTSY, cell division pro 99.1 2.8E-12 9.5E-17 150.1 -2.1 82 168-252 283-373 (503)
227 2rcn_A Probable GTPase ENGC; Y 99.1 1.1E-11 3.7E-16 140.8 2.5 121 873-1010 207-328 (358)
228 1odf_A YGR205W, hypothetical 3 99.1 4.2E-12 1.4E-16 141.1 -1.4 134 176-358 29-169 (290)
229 2ewv_A Twitching motility prot 99.1 6.2E-12 2.1E-16 145.0 -0.2 131 167-399 127-257 (372)
230 1n0w_A DNA repair protein RAD5 99.1 2.2E-11 7.5E-16 131.7 3.8 29 173-201 19-47 (243)
231 2yhs_A FTSY, cell division pro 99.1 4.9E-12 1.7E-16 148.0 -1.6 152 873-1053 284-447 (503)
232 1nij_A Hypothetical protein YJ 99.1 1.7E-13 5.8E-18 155.0 -14.1 164 178-392 4-196 (318)
233 1udx_A The GTP-binding protein 99.1 3.1E-12 1.1E-16 148.7 -3.9 158 872-1053 147-306 (416)
234 3e70_C DPA, signal recognition 99.1 9.3E-12 3.2E-16 140.6 -0.0 73 176-251 127-208 (328)
235 2kjq_A DNAA-related protein; s 99.1 6.3E-11 2.2E-15 118.4 5.6 44 1011-1055 81-125 (149)
236 1htw_A HI0065; nucleotide-bind 99.1 6E-12 2E-16 127.0 -2.7 78 869-952 20-97 (158)
237 2qm8_A GTPase/ATPase; G protei 99.0 8.5E-13 2.9E-17 150.2 -11.7 181 165-370 42-259 (337)
238 3ec2_A DNA replication protein 99.0 1.5E-10 5.3E-15 119.3 5.7 46 1011-1056 98-144 (180)
239 1udx_A The GTP-binding protein 99.0 9E-12 3.1E-16 144.8 -4.5 169 168-394 147-318 (416)
240 2oap_1 GSPE-2, type II secreti 99.0 2.7E-13 9.4E-18 162.0 -17.8 178 870-1064 248-458 (511)
241 2yv5_A YJEQ protein; hydrolase 99.0 5.2E-11 1.8E-15 133.5 1.7 124 176-336 163-300 (302)
242 2qm8_A GTPase/ATPase; G protei 99.0 1.6E-12 5.4E-17 148.0 -11.2 166 870-1043 43-260 (337)
243 2f1r_A Molybdopterin-guanine d 99.0 2.6E-12 9.1E-17 131.3 -8.5 139 883-1046 3-164 (171)
244 3e70_C DPA, signal recognition 99.0 1.6E-11 5.4E-16 138.6 -3.2 144 879-1055 126-279 (328)
245 3lda_A DNA repair protein RAD5 99.0 3E-10 1E-14 131.5 7.4 151 877-1072 173-363 (400)
246 1p9r_A General secretion pathw 99.0 5.1E-12 1.7E-16 147.2 -7.7 137 165-346 156-314 (418)
247 3auy_A DNA double-strand break 99.0 1.3E-09 4.3E-14 126.0 11.0 74 322-399 279-359 (371)
248 2oap_1 GSPE-2, type II secreti 99.0 1.9E-12 6.4E-17 154.8 -13.5 85 165-252 247-331 (511)
249 3ec2_A DNA replication protein 99.0 5.4E-11 1.9E-15 122.7 -0.8 48 339-387 98-146 (180)
250 1odf_A YGR205W, hypothetical 3 98.9 4.5E-11 1.5E-15 132.9 -2.2 132 880-1029 29-168 (290)
251 1p9r_A General secretion pathw 98.9 2.5E-12 8.5E-17 149.8 -14.3 135 869-1019 156-315 (418)
252 2yv5_A YJEQ protein; hydrolase 98.9 7E-11 2.4E-15 132.4 -2.6 123 878-1009 161-301 (302)
253 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 4.2E-12 1.5E-16 146.2 -14.0 169 174-410 16-209 (392)
254 3lda_A DNA repair protein RAD5 98.9 7.7E-10 2.6E-14 128.1 4.7 62 340-402 272-364 (400)
255 1sxj_E Activator 1 40 kDa subu 98.9 1.4E-09 4.9E-14 124.5 6.6 135 885-1056 39-175 (354)
256 2x8a_A Nuclear valosin-contain 98.9 5.8E-12 2E-16 139.2 -13.4 142 165-366 33-190 (274)
257 3c8u_A Fructokinase; YP_612366 98.8 4.3E-11 1.5E-15 126.7 -7.8 30 175-204 19-48 (208)
258 1u0l_A Probable GTPase ENGC; p 98.8 3E-10 1E-14 127.2 -1.5 72 175-250 166-259 (301)
259 3c8u_A Fructokinase; YP_612366 98.8 3.5E-11 1.2E-15 127.4 -8.8 120 879-1023 19-140 (208)
260 1lvg_A Guanylate kinase, GMP k 98.8 1E-12 3.5E-17 138.2 -20.6 57 334-400 116-173 (198)
261 1in4_A RUVB, holliday junction 98.8 2.3E-11 8E-16 138.5 -11.5 169 166-394 32-211 (334)
262 2kjq_A DNAA-related protein; s 98.8 4.8E-09 1.6E-13 104.7 6.2 35 165-204 28-62 (149)
263 1sq5_A Pantothenate kinase; P- 98.8 1E-10 3.4E-15 131.6 -7.0 74 176-254 78-156 (308)
264 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 7.7E-12 2.6E-16 144.0 -17.4 170 878-1082 16-209 (392)
265 1lvg_A Guanylate kinase, GMP k 98.7 4.7E-12 1.6E-16 133.1 -18.6 56 1006-1070 116-172 (198)
266 1t9h_A YLOQ, probable GTPase E 98.7 1.4E-09 4.7E-14 121.3 -0.2 70 175-248 170-248 (307)
267 1sq5_A Pantothenate kinase; P- 98.7 1.2E-10 4.2E-15 130.9 -9.1 97 844-957 38-156 (308)
268 1sxj_E Activator 1 40 kDa subu 98.7 1.5E-08 5E-13 116.0 7.2 135 181-386 39-175 (354)
269 1t9h_A YLOQ, probable GTPase E 98.7 1.6E-09 5.5E-14 120.7 -1.9 118 877-1002 168-302 (307)
270 2r6a_A DNAB helicase, replicat 98.7 3E-08 1E-12 117.6 8.8 178 870-1072 191-399 (454)
271 2dr3_A UPF0273 protein PH0284; 98.6 3.8E-09 1.3E-13 114.1 0.7 68 1004-1071 117-196 (247)
272 2x8a_A Nuclear valosin-contain 98.6 2.9E-11 9.7E-16 133.7 -16.8 142 869-1038 33-190 (274)
273 3euj_A Chromosome partition pr 98.6 7.5E-09 2.6E-13 121.8 1.5 53 165-221 17-69 (483)
274 1vma_A Cell division protein F 98.6 2E-08 7E-13 112.1 4.5 112 875-1041 97-211 (306)
275 1ls1_A Signal recognition part 98.6 1.3E-07 4.4E-12 105.4 10.0 128 873-1052 91-219 (295)
276 1u0l_A Probable GTPase ENGC; p 98.6 5.9E-09 2E-13 116.7 -1.1 102 877-987 164-288 (301)
277 1vma_A Cell division protein F 98.5 3.5E-08 1.2E-12 110.2 4.6 112 171-369 97-211 (306)
278 2px0_A Flagellar biosynthesis 98.5 1.2E-07 4E-12 105.7 7.8 142 176-406 103-247 (296)
279 2zr9_A Protein RECA, recombina 98.5 2.1E-07 7.2E-12 106.0 9.8 71 1002-1072 126-230 (349)
280 1in4_A RUVB, holliday junction 98.5 6.1E-10 2.1E-14 126.7 -11.3 150 869-1043 31-194 (334)
281 2r6a_A DNAB helicase, replicat 98.5 1.4E-07 4.8E-12 111.8 8.3 184 163-403 188-401 (454)
282 2dr3_A UPF0273 protein PH0284; 98.5 3E-07 1E-11 99.1 10.1 60 340-400 127-196 (247)
283 3k1j_A LON protease, ATP-depen 98.5 6.3E-09 2.2E-13 127.8 -3.7 159 165-368 47-227 (604)
284 2px0_A Flagellar biosynthesis 98.4 1.8E-07 6.2E-12 104.1 6.9 161 880-1099 103-268 (296)
285 3tr0_A Guanylate kinase, GMP k 98.4 9.3E-09 3.2E-13 107.9 -3.4 69 172-247 1-72 (205)
286 3tr0_A Guanylate kinase, GMP k 98.4 6.2E-09 2.1E-13 109.3 -6.4 69 876-950 1-72 (205)
287 1oix_A RAS-related protein RAB 98.4 2.1E-07 7.3E-12 96.6 5.0 38 1002-1041 152-189 (191)
288 2ius_A DNA translocase FTSK; n 98.4 6.1E-08 2.1E-12 114.9 0.6 166 874-1056 159-343 (512)
289 1ixz_A ATP-dependent metallopr 98.3 1.4E-09 4.6E-14 118.8 -12.9 75 166-247 39-117 (254)
290 1iy2_A ATP-dependent metallopr 98.3 1.1E-09 3.6E-14 121.4 -14.1 76 166-248 63-142 (278)
291 1ls1_A Signal recognition part 98.3 7.7E-07 2.6E-11 99.1 8.8 117 169-368 91-208 (295)
292 1iy2_A ATP-dependent metallopr 98.3 6.2E-10 2.1E-14 123.3 -16.3 127 870-1022 63-194 (278)
293 1oix_A RAS-related protein RAB 98.3 8.5E-08 2.9E-12 99.6 0.8 43 324-368 146-188 (191)
294 2ius_A DNA translocase FTSK; n 98.3 4.6E-08 1.6E-12 115.9 -1.4 166 170-386 159-343 (512)
295 3euj_A Chromosome partition pr 98.3 6.9E-08 2.3E-12 113.7 0.1 50 870-922 18-67 (483)
296 3k1j_A LON protease, ATP-depen 98.3 1.7E-08 6E-13 123.9 -5.7 161 867-1040 45-227 (604)
297 1ixz_A ATP-dependent metallopr 98.3 8.6E-10 2.9E-14 120.3 -16.3 129 870-1024 39-172 (254)
298 3hr8_A Protein RECA; alpha and 98.3 6.1E-07 2.1E-11 101.9 5.8 41 173-216 56-97 (356)
299 2zr9_A Protein RECA, recombina 98.2 7.6E-07 2.6E-11 101.4 6.4 30 173-202 56-85 (349)
300 3lnc_A Guanylate kinase, GMP k 98.2 2.9E-07 1E-11 98.7 2.0 40 165-204 14-54 (231)
301 1qhl_A Protein (cell division 98.2 3.6E-08 1.2E-12 105.1 -6.0 59 172-234 22-91 (227)
302 2f9l_A RAB11B, member RAS onco 98.1 1.1E-06 3.7E-11 91.7 4.5 37 1004-1042 130-166 (199)
303 3lnc_A Guanylate kinase, GMP k 98.1 1.1E-06 3.8E-11 94.1 2.5 207 870-1098 15-229 (231)
304 4eun_A Thermoresistant glucoki 98.0 1.9E-07 6.5E-12 97.8 -3.8 71 173-250 24-96 (200)
305 2ce7_A Cell division protein F 98.0 4.3E-06 1.5E-10 98.8 7.1 59 998-1056 93-165 (476)
306 2qtf_A Protein HFLX, GTP-bindi 98.0 3E-06 1E-10 97.1 5.2 160 180-371 181-353 (364)
307 2qtf_A Protein HFLX, GTP-bindi 98.0 1.1E-06 3.6E-11 100.8 0.2 147 884-1043 181-353 (364)
308 3hr8_A Protein RECA; alpha and 98.0 2.8E-06 9.4E-11 96.5 3.3 29 877-905 56-84 (356)
309 2xau_A PRE-mRNA-splicing facto 97.9 3.6E-06 1.2E-10 105.8 4.6 75 995-1070 190-266 (773)
310 3kta_A Chromosome segregation 97.9 2.8E-06 9.7E-11 87.2 3.0 36 169-205 18-53 (182)
311 2ce7_A Cell division protein F 97.9 1.4E-05 4.9E-10 94.3 8.1 61 326-386 93-165 (476)
312 2f9l_A RAB11B, member RAS onco 97.9 5.2E-06 1.8E-10 86.4 3.9 38 331-370 129-166 (199)
313 4eun_A Thermoresistant glucoki 97.9 5.1E-07 1.7E-11 94.5 -4.3 41 876-922 23-63 (200)
314 1qhl_A Protein (cell division 97.9 3.7E-07 1.3E-11 97.3 -5.6 59 876-937 22-91 (227)
315 2j41_A Guanylate kinase; GMP, 97.9 4.6E-06 1.6E-10 87.2 2.7 32 174-205 2-33 (207)
316 2e87_A Hypothetical protein PH 97.9 2.2E-05 7.4E-10 89.9 8.5 60 995-1056 231-293 (357)
317 1zu4_A FTSY; GTPase, signal re 97.8 2.3E-06 7.9E-11 96.2 0.3 81 167-250 94-187 (320)
318 4a1f_A DNAB helicase, replicat 97.8 1.3E-05 4.6E-10 90.3 5.3 140 163-400 31-170 (338)
319 4a1f_A DNAB helicase, replicat 97.8 9.6E-06 3.3E-10 91.4 4.1 128 871-1053 35-164 (338)
320 3a00_A Guanylate kinase, GMP k 97.7 5.8E-06 2E-10 85.4 1.3 28 178-205 1-28 (186)
321 2dhr_A FTSH; AAA+ protein, hex 97.7 5.6E-07 1.9E-11 106.9 -7.7 49 166-221 54-102 (499)
322 3vaa_A Shikimate kinase, SK; s 97.7 1.3E-05 4.3E-10 83.7 3.5 40 163-202 10-49 (199)
323 4e22_A Cytidylate kinase; P-lo 97.7 2.5E-06 8.5E-11 92.8 -2.8 63 167-235 19-96 (252)
324 3nwj_A ATSK2; P loop, shikimat 97.7 3E-06 1E-10 91.7 -2.7 51 843-905 17-71 (250)
325 3uie_A Adenylyl-sulfate kinase 97.6 2.4E-06 8.1E-11 89.4 -4.1 52 165-220 12-65 (200)
326 2dy1_A Elongation factor G; tr 97.6 1.5E-05 5.3E-10 98.5 2.5 133 876-1057 3-138 (665)
327 3t34_A Dynamin-related protein 97.6 0.00012 4.1E-09 83.8 8.9 57 996-1053 155-212 (360)
328 3kta_A Chromosome segregation 97.6 2.7E-05 9.4E-10 79.7 3.0 32 873-905 18-49 (182)
329 2dhr_A FTSH; AAA+ protein, hex 97.5 5.4E-07 1.8E-11 107.0 -11.4 75 870-950 54-132 (499)
330 1jjv_A Dephospho-COA kinase; P 97.5 1.5E-05 5.1E-10 83.5 0.8 71 996-1070 60-131 (206)
331 3vaa_A Shikimate kinase, SK; s 97.5 3.5E-05 1.2E-09 80.3 3.3 37 869-905 12-48 (199)
332 1kgd_A CASK, peripheral plasma 97.5 3.2E-05 1.1E-09 79.3 2.8 37 177-215 4-40 (180)
333 1fnn_A CDC6P, cell division co 97.5 0.00039 1.3E-08 79.9 12.0 44 1012-1056 124-170 (389)
334 2xau_A PRE-mRNA-splicing facto 97.5 6.1E-05 2.1E-09 94.6 5.1 78 324-402 191-270 (773)
335 3nwj_A ATSK2; P loop, shikimat 97.5 8.2E-06 2.8E-10 88.3 -2.5 39 165-203 32-73 (250)
336 2vp4_A Deoxynucleoside kinase; 97.4 4.1E-05 1.4E-09 81.8 2.2 39 174-219 16-54 (230)
337 3a00_A Guanylate kinase, GMP k 97.4 4.4E-05 1.5E-09 78.7 1.9 26 882-907 1-26 (186)
338 4e22_A Cytidylate kinase; P-lo 97.4 2E-05 6.7E-10 85.6 -0.7 57 880-938 25-96 (252)
339 1ega_A Protein (GTP-binding pr 97.4 0.00017 6E-09 80.3 7.0 64 996-1067 101-170 (301)
340 2j41_A Guanylate kinase; GMP, 97.4 6.1E-05 2.1E-09 78.5 2.9 29 878-906 2-30 (207)
341 2vp4_A Deoxynucleoside kinase; 97.4 4.4E-05 1.5E-09 81.6 1.8 42 875-922 13-54 (230)
342 1zu4_A FTSY; GTPase, signal re 97.4 2.9E-05 9.9E-10 87.2 0.4 50 871-922 94-143 (320)
343 3tau_A Guanylate kinase, GMP k 97.4 7.5E-05 2.6E-09 78.5 3.4 29 176-204 6-34 (208)
344 1kgd_A CASK, peripheral plasma 97.3 6.9E-05 2.3E-09 76.8 2.7 36 881-917 4-39 (180)
345 3bh0_A DNAB-like replicative h 97.3 0.00025 8.7E-09 79.5 7.5 39 163-201 53-91 (315)
346 3b9p_A CG5977-PA, isoform A; A 97.3 0.00095 3.3E-08 73.8 12.1 73 997-1069 97-186 (297)
347 1rz3_A Hypothetical protein rb 97.3 4.4E-05 1.5E-09 79.7 0.9 41 175-218 19-59 (201)
348 1jjv_A Dephospho-COA kinase; P 97.3 8.1E-05 2.8E-09 77.8 2.9 69 325-399 61-131 (206)
349 1svm_A Large T antigen; AAA+ f 97.3 3.1E-05 1.1E-09 88.7 -0.7 44 165-214 156-199 (377)
350 3bh0_A DNAB-like replicative h 97.3 0.00028 9.4E-09 79.2 6.9 35 870-904 56-90 (315)
351 3uie_A Adenylyl-sulfate kinase 97.3 3.5E-05 1.2E-09 80.3 -0.5 49 870-921 13-63 (200)
352 1knq_A Gluconate kinase; ALFA/ 97.3 7.9E-05 2.7E-09 75.7 2.1 36 176-218 6-41 (175)
353 2e87_A Hypothetical protein PH 97.3 0.00055 1.9E-08 78.1 9.3 55 324-381 232-287 (357)
354 3ney_A 55 kDa erythrocyte memb 97.2 8.3E-05 2.9E-09 77.2 2.1 28 176-203 17-44 (197)
355 1v5w_A DMC1, meiotic recombina 97.2 0.0011 3.7E-08 75.2 11.5 28 877-904 117-144 (343)
356 2qt1_A Nicotinamide riboside k 97.2 0.00016 5.6E-09 75.6 4.0 30 174-203 17-46 (207)
357 3b9p_A CG5977-PA, isoform A; A 97.2 0.0016 5.6E-08 71.9 12.3 27 176-202 52-78 (297)
358 3t34_A Dynamin-related protein 97.1 0.00031 1.1E-08 80.3 5.6 34 165-201 24-57 (360)
359 1svm_A Large T antigen; AAA+ f 97.1 6.6E-05 2.3E-09 86.0 -0.2 156 870-1049 157-326 (377)
360 2dy1_A Elongation factor G; tr 97.1 5.1E-05 1.7E-09 93.8 -1.2 47 173-221 4-50 (665)
361 3tau_A Guanylate kinase, GMP k 97.1 0.00019 6.5E-09 75.3 3.2 28 880-907 6-33 (208)
362 1f2t_A RAD50 ABC-ATPase; DNA d 97.1 0.00024 8.3E-09 70.4 3.4 28 875-903 17-44 (149)
363 1f2t_A RAD50 ABC-ATPase; DNA d 97.1 0.00029 9.8E-09 69.9 3.9 30 170-200 16-45 (149)
364 3cr8_A Sulfate adenylyltranfer 97.0 9.7E-05 3.3E-09 88.8 0.1 42 174-218 365-408 (552)
365 2z43_A DNA repair and recombin 97.0 0.0013 4.4E-08 74.0 9.3 28 877-904 102-129 (324)
366 3tqc_A Pantothenate kinase; bi 97.0 4.9E-05 1.7E-09 85.1 -2.4 25 180-204 94-118 (321)
367 1kag_A SKI, shikimate kinase I 97.0 0.00021 7.3E-09 72.2 2.2 27 177-203 3-29 (173)
368 2z43_A DNA repair and recombin 97.0 0.0028 9.4E-08 71.3 11.4 35 167-201 95-130 (324)
369 3ney_A 55 kDa erythrocyte memb 96.9 0.00036 1.2E-08 72.3 2.6 27 880-906 17-43 (197)
370 2z4s_A Chromosomal replication 96.9 0.00098 3.3E-08 78.3 6.6 71 1012-1083 193-265 (440)
371 1v5w_A DMC1, meiotic recombina 96.8 0.0051 1.8E-07 69.6 12.0 34 168-201 111-145 (343)
372 3ice_A Transcription terminati 96.8 0.00028 9.7E-09 79.7 1.4 51 843-905 133-197 (422)
373 1knq_A Gluconate kinase; ALFA/ 96.8 0.00047 1.6E-08 69.9 2.7 36 880-921 6-41 (175)
374 3kl4_A SRP54, signal recogniti 96.7 0.0019 6.4E-08 75.1 7.7 25 881-905 96-120 (433)
375 2qby_A CDC6 homolog 1, cell di 96.7 0.00055 1.9E-08 78.3 3.2 26 880-905 43-68 (386)
376 2p67_A LAO/AO transport system 96.7 0.00012 4E-09 83.2 -2.5 48 166-216 44-91 (341)
377 2www_A Methylmalonic aciduria 96.7 0.00034 1.2E-08 79.6 1.2 41 176-219 72-112 (349)
378 1ypw_A Transitional endoplasmi 96.7 0.0012 4.1E-08 83.4 6.1 31 877-907 233-263 (806)
379 2z4s_A Chromosomal replication 96.7 0.00022 7.5E-09 83.8 -0.8 47 340-387 193-240 (440)
380 3tqc_A Pantothenate kinase; bi 96.7 0.00019 6.4E-09 80.4 -1.6 39 868-906 72-116 (321)
381 4eaq_A DTMP kinase, thymidylat 96.6 0.00057 1.9E-08 72.9 2.1 38 167-204 12-52 (229)
382 3cf0_A Transitional endoplasmi 96.6 0.0048 1.6E-07 68.5 9.7 29 175-203 46-74 (301)
383 4fcw_A Chaperone protein CLPB; 96.6 0.0047 1.6E-07 68.5 9.6 29 177-205 46-74 (311)
384 1fnn_A CDC6P, cell division co 96.6 0.0064 2.2E-07 69.6 11.0 28 177-204 41-70 (389)
385 1kag_A SKI, shikimate kinase I 96.6 0.00062 2.1E-08 68.7 2.1 26 881-906 3-28 (173)
386 2qt1_A Nicotinamide riboside k 96.6 0.0009 3.1E-08 69.9 3.3 31 876-906 15-45 (207)
387 2pez_A Bifunctional 3'-phospho 96.6 0.00052 1.8E-08 69.9 1.2 39 176-218 3-43 (179)
388 3cf0_A Transitional endoplasmi 96.6 0.0018 6.1E-08 72.0 5.7 30 877-906 44-73 (301)
389 1mky_A Probable GTP-binding pr 96.5 0.0018 6.2E-08 76.0 5.7 41 179-219 181-230 (439)
390 1rz3_A Hypothetical protein rb 96.5 0.00089 3E-08 69.7 2.7 28 879-906 19-46 (201)
391 3qks_A DNA double-strand break 96.5 0.0013 4.5E-08 68.6 3.9 30 170-200 16-45 (203)
392 3qks_A DNA double-strand break 96.5 0.0012 4E-08 69.0 3.4 28 875-903 17-44 (203)
393 3kl4_A SRP54, signal recogniti 96.5 0.0041 1.4E-07 72.2 8.3 35 177-214 96-130 (433)
394 3m6a_A ATP-dependent protease 96.5 0.00037 1.3E-08 84.1 -0.7 47 166-216 97-143 (543)
395 2gj8_A MNME, tRNA modification 96.5 0.0025 8.7E-08 64.3 5.6 27 176-202 2-28 (172)
396 2gj8_A MNME, tRNA modification 96.5 0.0025 8.6E-08 64.3 5.6 26 880-905 2-27 (172)
397 2q6t_A DNAB replication FORK h 96.4 0.012 4E-07 69.1 11.6 38 165-202 187-224 (444)
398 1m7g_A Adenylylsulfate kinase; 96.4 0.00067 2.3E-08 71.2 0.8 41 175-218 22-64 (211)
399 1m2o_B GTP-binding protein SAR 96.3 0.0024 8.4E-08 65.5 4.3 35 166-201 12-46 (190)
400 1u94_A RECA protein, recombina 96.3 0.023 7.9E-07 64.4 12.6 30 173-202 58-87 (356)
401 3lxx_A GTPase IMAP family memb 96.3 0.017 5.8E-07 61.5 10.9 42 1012-1053 111-154 (239)
402 4eaq_A DTMP kinase, thymidylat 96.2 0.0021 7.2E-08 68.5 3.4 36 871-906 12-50 (229)
403 1y63_A LMAJ004144AAA protein; 96.2 0.0018 6.2E-08 66.3 2.7 32 170-201 2-33 (184)
404 2qor_A Guanylate kinase; phosp 96.2 0.002 6.8E-08 67.2 2.9 29 175-203 9-37 (204)
405 2p67_A LAO/AO transport system 96.1 0.0009 3.1E-08 75.9 0.1 36 870-905 44-79 (341)
406 1m2o_B GTP-binding protein SAR 96.1 0.004 1.4E-07 63.8 4.9 49 870-919 12-66 (190)
407 1f6b_A SAR1; gtpases, N-termin 96.1 0.0012 4.3E-08 68.2 1.0 35 166-201 14-48 (198)
408 1cke_A CK, MSSA, protein (cyti 96.1 0.0023 7.9E-08 67.5 3.0 34 178-214 5-41 (227)
409 2q6t_A DNAB replication FORK h 96.1 0.008 2.7E-07 70.6 7.9 34 871-904 189-222 (444)
410 2qag_A Septin-2, protein NEDD5 96.1 0.00065 2.2E-08 77.6 -1.4 77 165-250 30-106 (361)
411 1np6_A Molybdopterin-guanine d 96.1 0.0021 7.3E-08 65.3 2.5 40 179-218 7-46 (174)
412 3cr8_A Sulfate adenylyltranfer 96.0 0.0014 4.9E-08 78.7 1.2 42 878-921 365-408 (552)
413 2yvu_A Probable adenylyl-sulfa 96.0 0.0016 5.5E-08 66.7 1.4 30 176-205 11-40 (186)
414 3llm_A ATP-dependent RNA helic 96.0 0.019 6.5E-07 61.1 9.4 25 879-903 73-97 (235)
415 1u94_A RECA protein, recombina 95.9 0.093 3.2E-06 59.5 15.5 28 877-904 58-85 (356)
416 3bgw_A DNAB-like replicative h 95.9 0.0089 3E-07 70.1 7.3 34 871-904 186-219 (444)
417 2ffh_A Protein (FFH); SRP54, s 95.9 0.0019 6.6E-08 74.9 1.6 45 169-218 91-135 (425)
418 3lxx_A GTPase IMAP family memb 95.9 0.042 1.4E-06 58.4 11.9 25 180-204 31-55 (239)
419 2pez_A Bifunctional 3'-phospho 95.9 0.0032 1.1E-07 63.9 2.9 26 880-905 3-28 (179)
420 2ohf_A Protein OLA1, GTP-bindi 95.9 0.0032 1.1E-07 72.2 3.0 30 172-201 16-45 (396)
421 1cke_A CK, MSSA, protein (cyti 95.8 0.0032 1.1E-07 66.4 2.7 56 882-937 5-73 (227)
422 3ice_A Transcription terminati 95.8 0.0022 7.6E-08 72.5 1.4 33 170-202 166-198 (422)
423 1mky_A Probable GTP-binding pr 95.7 0.0061 2.1E-07 71.5 4.8 39 883-921 181-229 (439)
424 2qor_A Guanylate kinase; phosp 95.7 0.0037 1.3E-07 65.0 2.6 28 879-906 9-36 (204)
425 2p5t_B PEZT; postsegregational 95.7 0.0021 7.3E-08 69.5 0.7 40 174-218 28-67 (253)
426 1y63_A LMAJ004144AAA protein; 95.7 0.0046 1.6E-07 63.2 3.2 32 874-905 2-33 (184)
427 2ga8_A Hypothetical 39.9 kDa p 95.7 0.00076 2.6E-08 75.9 -3.0 37 167-203 11-49 (359)
428 3h4m_A Proteasome-activating n 95.7 0.012 4E-07 64.5 6.5 28 879-906 48-75 (285)
429 1j8m_F SRP54, signal recogniti 95.7 0.0014 4.8E-08 72.7 -1.0 46 169-218 89-135 (297)
430 3m6a_A ATP-dependent protease 95.7 0.0023 8E-08 77.1 0.9 48 870-920 97-144 (543)
431 1f6b_A SAR1; gtpases, N-termin 95.7 0.0027 9.4E-08 65.6 1.3 35 870-905 14-48 (198)
432 2b8t_A Thymidine kinase; deoxy 95.6 0.016 5.5E-07 61.2 7.1 53 1013-1070 89-150 (223)
433 3cm0_A Adenylate kinase; ATP-b 95.6 0.0057 1.9E-07 62.3 3.5 26 176-201 2-27 (186)
434 3llm_A ATP-dependent RNA helic 95.6 0.00078 2.7E-08 72.0 -3.2 67 325-394 162-229 (235)
435 2i1q_A DNA repair and recombin 95.6 0.045 1.5E-06 61.1 11.2 132 879-1053 95-257 (322)
436 2if2_A Dephospho-COA kinase; a 95.6 0.0045 1.5E-07 64.2 2.6 21 180-200 3-23 (204)
437 1ega_A Protein (GTP-binding pr 95.5 0.0045 1.6E-07 68.7 2.6 24 178-201 8-31 (301)
438 2www_A Methylmalonic aciduria 95.5 0.005 1.7E-07 69.9 2.8 26 880-905 72-97 (349)
439 2wjg_A FEOB, ferrous iron tran 95.5 0.007 2.4E-07 61.4 3.6 22 180-201 9-30 (188)
440 2b8t_A Thymidine kinase; deoxy 95.5 0.013 4.6E-07 61.8 5.7 53 341-399 89-150 (223)
441 1l8q_A Chromosomal replication 95.5 0.025 8.4E-07 63.2 8.3 102 880-1055 35-141 (324)
442 3d8b_A Fidgetin-like protein 1 95.5 0.05 1.7E-06 61.8 10.9 26 880-905 115-140 (357)
443 2wjg_A FEOB, ferrous iron tran 95.4 0.013 4.5E-07 59.3 5.5 23 883-905 8-30 (188)
444 2if2_A Dephospho-COA kinase; a 95.4 0.0051 1.7E-07 63.8 2.4 21 884-904 3-23 (204)
445 3lxw_A GTPase IMAP family memb 95.4 0.034 1.2E-06 59.7 8.8 117 884-1053 23-147 (247)
446 2wji_A Ferrous iron transport 95.4 0.0073 2.5E-07 60.2 3.2 24 883-906 4-27 (165)
447 2wji_A Ferrous iron transport 95.4 0.0082 2.8E-07 59.8 3.5 23 180-202 5-27 (165)
448 1qhx_A CPT, protein (chloramph 95.4 0.008 2.7E-07 60.7 3.5 26 178-203 3-28 (178)
449 3t61_A Gluconokinase; PSI-biol 95.3 0.0057 2E-07 63.4 2.2 25 178-202 18-42 (202)
450 3kb2_A SPBC2 prophage-derived 95.3 0.0079 2.7E-07 60.2 3.1 23 180-202 3-25 (173)
451 3d8b_A Fidgetin-like protein 1 95.2 0.079 2.7E-06 60.1 11.6 26 177-202 116-141 (357)
452 2v1u_A Cell division control p 95.2 0.024 8.1E-07 64.6 7.2 26 880-905 42-67 (387)
453 2rhm_A Putative kinase; P-loop 95.1 0.0087 3E-07 61.2 3.0 27 176-202 3-29 (193)
454 1lv7_A FTSH; alpha/beta domain 95.1 0.0061 2.1E-07 65.8 1.9 35 167-203 36-70 (257)
455 2ga8_A Hypothetical 39.9 kDa p 95.1 0.0025 8.5E-08 71.7 -1.3 34 871-904 11-46 (359)
456 1kht_A Adenylate kinase; phosp 95.1 0.01 3.6E-07 60.4 3.3 26 178-203 3-28 (192)
457 2yvu_A Probable adenylyl-sulfa 95.1 0.01 3.5E-07 60.5 3.2 29 877-905 8-36 (186)
458 2ohf_A Protein OLA1, GTP-bindi 95.0 0.01 3.4E-07 68.1 3.3 30 876-905 16-45 (396)
459 1sxj_C Activator 1 40 kDa subu 95.0 0.0023 7.8E-08 72.4 -2.1 40 165-204 31-72 (340)
460 1np6_A Molybdopterin-guanine d 95.0 0.0094 3.2E-07 60.5 2.7 37 883-919 7-44 (174)
461 3r20_A Cytidylate kinase; stru 95.0 0.011 3.8E-07 62.8 3.3 24 179-202 10-33 (233)
462 2zej_A Dardarin, leucine-rich 94.9 0.012 4.2E-07 59.7 3.2 23 180-202 4-26 (184)
463 1m7g_A Adenylylsulfate kinase; 94.8 0.01 3.5E-07 62.0 2.5 30 877-906 20-49 (211)
464 2zej_A Dardarin, leucine-rich 94.8 0.013 4.5E-07 59.5 3.2 22 884-905 4-25 (184)
465 3trf_A Shikimate kinase, SK; a 94.8 0.014 4.7E-07 59.4 3.3 26 177-202 4-29 (185)
466 2v54_A DTMP kinase, thymidylat 94.8 0.013 4.6E-07 60.4 3.2 26 177-202 3-28 (204)
467 2plr_A DTMP kinase, probable t 94.8 0.016 5.4E-07 60.1 3.8 28 177-204 3-30 (213)
468 3lw7_A Adenylate kinase relate 94.8 0.014 4.8E-07 58.2 3.2 19 180-198 3-21 (179)
469 1q3t_A Cytidylate kinase; nucl 94.7 0.012 4.2E-07 62.6 2.9 28 175-202 13-40 (236)
470 2ze6_A Isopentenyl transferase 94.7 0.013 4.4E-07 63.3 3.1 24 179-202 2-25 (253)
471 1ly1_A Polynucleotide kinase; 94.7 0.016 5.4E-07 58.4 3.5 22 179-200 3-24 (181)
472 3cm0_A Adenylate kinase; ATP-b 94.7 0.014 4.6E-07 59.4 3.0 25 880-904 2-26 (186)
473 3t61_A Gluconokinase; PSI-biol 94.7 0.013 4.3E-07 60.7 2.7 24 882-905 18-41 (202)
474 2qag_A Septin-2, protein NEDD5 94.7 0.0029 9.8E-08 72.3 -2.5 30 870-905 31-60 (361)
475 1ex7_A Guanylate kinase; subst 94.6 0.013 4.5E-07 60.1 2.7 24 180-203 3-26 (186)
476 1gvn_B Zeta; postsegregational 94.6 0.016 5.3E-07 63.9 3.4 35 177-216 32-66 (287)
477 3iij_A Coilin-interacting nucl 94.6 0.015 5E-07 59.0 2.8 26 177-202 10-35 (180)
478 1q57_A DNA primase/helicase; d 94.5 0.19 6.4E-06 59.8 12.7 33 872-904 232-264 (503)
479 2c95_A Adenylate kinase 1; tra 94.5 0.016 5.6E-07 59.2 3.0 27 176-202 7-33 (196)
480 3bgw_A DNAB-like replicative h 94.4 0.061 2.1E-06 62.9 8.1 38 164-201 183-220 (444)
481 2wwf_A Thymidilate kinase, put 94.4 0.018 6.2E-07 59.8 3.3 27 176-202 8-34 (212)
482 1ypw_A Transitional endoplasmi 94.4 0.011 3.9E-07 74.5 1.8 32 173-204 233-264 (806)
483 2jaq_A Deoxyguanosine kinase; 94.4 0.02 6.8E-07 59.0 3.3 23 180-202 2-24 (205)
484 1xwi_A SKD1 protein; VPS4B, AA 94.3 0.25 8.5E-06 55.1 12.6 120 879-1069 42-176 (322)
485 1via_A Shikimate kinase; struc 94.3 0.019 6.6E-07 57.8 3.1 23 180-202 6-28 (175)
486 1aky_A Adenylate kinase; ATP:A 94.3 0.021 7.3E-07 59.9 3.5 27 176-202 2-28 (220)
487 1vht_A Dephospho-COA kinase; s 94.3 0.023 7.8E-07 59.5 3.7 24 177-200 3-26 (218)
488 1tev_A UMP-CMP kinase; ploop, 94.3 0.023 7.9E-07 57.9 3.6 25 178-202 3-27 (196)
489 1q3t_A Cytidylate kinase; nucl 94.3 0.021 7.1E-07 60.8 3.3 25 880-904 14-38 (236)
490 1nn5_A Similar to deoxythymidy 94.2 0.021 7E-07 59.4 3.1 27 176-202 7-33 (215)
491 1qhx_A CPT, protein (chloramph 94.2 0.022 7.6E-07 57.3 3.3 25 882-906 3-27 (178)
492 2bwj_A Adenylate kinase 5; pho 94.2 0.0076 2.6E-07 62.0 -0.3 27 176-202 10-36 (199)
493 1j8m_F SRP54, signal recogniti 94.2 0.013 4.5E-07 64.8 1.7 46 873-921 89-135 (297)
494 1xp8_A RECA protein, recombina 94.2 0.52 1.8E-05 53.5 14.8 120 879-1053 71-209 (366)
495 3kb2_A SPBC2 prophage-derived 94.2 0.021 7.2E-07 57.0 3.0 22 884-905 3-24 (173)
496 1xjc_A MOBB protein homolog; s 94.2 0.016 5.4E-07 58.4 2.0 26 179-204 5-30 (169)
497 1sxj_C Activator 1 40 kDa subu 94.2 0.0047 1.6E-07 69.8 -2.1 37 869-905 31-69 (340)
498 1nks_A Adenylate kinase; therm 94.2 0.023 7.9E-07 57.8 3.3 24 180-203 3-26 (194)
499 3cmw_A Protein RECA, recombina 94.1 0.052 1.8E-06 72.6 7.3 148 175-408 729-908 (1706)
500 1ex7_A Guanylate kinase; subst 94.0 0.022 7.5E-07 58.4 2.8 21 885-905 4-24 (186)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.8e-75 Score=769.68 Aligned_cols=217 Identities=26% Similarity=0.381 Sum_probs=182.7
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
..+.|+||+|+|+.. ++.++|+||||+|+|||++|||||||||||||+++|.|..++ .+|.|.|||.+
T Consensus 1075 g~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p--~~G~I~iDG~d 1142 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT--LGGEIFIDGSE 1142 (1321)
T ss_dssp CCEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCC--SSSEEEETTEE
T ss_pred CeEEEEEEEEeCCCC----------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccC--CCCEEEECCEE
Confidence 369999999998642 234699999999999999999999999999999999998764 58999999998
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 001291 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR-------QSLVGLP 991 (1106)
Q Consensus 922 ~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~-------~~~~~~~ 991 (1106)
+++ ..+|+.++||||++.++. -|++|||.|+.. +. +..++.++++++..++.+.. |..+|..
T Consensus 1143 i~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gld---~~----~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~ 1214 (1321)
T 4f4c_A 1143 IKTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGLD---PS----SVTMAQVEEAARLANIHNFIAELPEGFETRVGDR 1214 (1321)
T ss_dssp TTTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSSC---TT----TSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTT
T ss_pred hhhCCHHHHHhheEEECCCCEeeC-ccHHHHHhccCC---CC----CCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCC
Confidence 765 456788999999998875 699999987631 11 12345688899999886543 3445544
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
| .+||||||||+||||||+++|+||+||||||+||+++.+.|++.|+++. +|+|+|+|+|+++. ...||+|++|+
T Consensus 1215 G-~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld- 1289 (1321)
T 4f4c_A 1215 G-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVS- 1289 (1321)
T ss_dssp S-CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEES-
T ss_pred C-cccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEE-
Confidence 4 4699999999999999999999999999999999999999999999875 48999999999984 57899999997
Q ss_pred CCEEEEEecCCC
Q 001291 1072 GGREVYVGPLGH 1083 (1106)
Q Consensus 1072 gG~~~~~G~~~~ 1083 (1106)
+|++++.|++.+
T Consensus 1290 ~G~IvE~Gth~e 1301 (1321)
T 4f4c_A 1290 NGTIIEKGTHTQ 1301 (1321)
T ss_dssp SSSEEEEECHHH
T ss_pred CCEEEEECCHHH
Confidence 579999998653
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.7e-69 Score=709.89 Aligned_cols=217 Identities=26% Similarity=0.371 Sum_probs=175.8
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
..+.|+||++.|+..+ +.++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 1029 g~i~~~~v~~~y~~~~----------~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p--~~G~I~i~g~~ 1096 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRP----------SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP--MAGSVFLDGKE 1096 (1284)
T ss_dssp CCEEEEEEEBCCSCGG----------GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCC--SEEEEESSSSC
T ss_pred CcEEEEEEEEECCCCC----------CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEE
Confidence 3689999999886321 23589999999999999999999999999999999998764 58999999998
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 001291 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR-------QSLVGLP 991 (1106)
Q Consensus 922 ~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~-------~~~~~~~ 991 (1106)
++. ...++.+|||+|++.++ ..||+||+.++...+ ... ++.++++++..++.+.. +..++..
T Consensus 1097 i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~~---~~~----~~~i~~~~~~~~~~~~i~~l~~gldt~vge~ 1168 (1284)
T 3g5u_A 1097 IKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNSR---VVS----YEEIVRAAKEANIHQFIDSLPDKYNTRVGDK 1168 (1284)
T ss_dssp TTSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSSC---CCC----HHHHHHHHHHHTCHHHHSSTTTGGGCBCSTT
T ss_pred cccCCHHHHHhceEEECCCCccc-cccHHHHHhccCCCC---CCC----HHHHHHHHHHhCcHHHHHhCccccccccCCC
Confidence 754 34567899999999766 479999998763211 111 23355666666665433 3334443
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
| .+||||||||++|||||+++|+||+|||||||||+.+++.|++.|+++. +|+|||+||||++. + ..||||++|+
T Consensus 1169 G-~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~~-i-~~~dri~vl~- 1243 (1284)
T 3g5u_A 1169 G-TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLST-I-QNADLIVVIQ- 1243 (1284)
T ss_dssp S-CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTTG-G-GSCSEEEEEE-
T ss_pred C-CccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHHH-H-HcCCEEEEEE-
Confidence 3 4699999999999999999999999999999999999999999998864 59999999999984 4 6699999998
Q ss_pred CCEEEEEecCCC
Q 001291 1072 GGREVYVGPLGH 1083 (1106)
Q Consensus 1072 gG~~~~~G~~~~ 1083 (1106)
+|++++.|+..+
T Consensus 1244 ~G~i~~~g~~~~ 1255 (1284)
T 3g5u_A 1244 NGKVKEHGTHQQ 1255 (1284)
T ss_dssp TBEEEEEECHHH
T ss_pred CCEEEEECCHHH
Confidence 579999998643
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.4e-58 Score=563.79 Aligned_cols=203 Identities=24% Similarity=0.297 Sum_probs=166.8
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++ + ..|+++||+|++||++||+||||||||||+++|+|..++ .+|+|.+
T Consensus 357 ~l~~~~l~~~~~-------------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~----- 415 (607)
T 3bk7_A 357 LVEYPRLVKDYG-------------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKVEW----- 415 (607)
T ss_dssp EEEECCEEEECS-------------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBSCCCC-----
T ss_pred EEEEeceEEEec-------------c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEE-----
Confidence 477788776542 1 268999999999999999999999999999999997664 3677765
Q ss_pred ChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 923 KQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 923 ~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
.+.+||++|++...+.+||.|++.+...... ...+.++++++.+++.+..++.+ .+|||||||
T Consensus 416 -----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~Q 478 (607)
T 3bk7_A 416 -----DLTVAYKPQYIKAEYEGTVYELLSKIDSSKL-------NSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQ 478 (607)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------HCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHH
T ss_pred -----eeEEEEEecCccCCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 2358999999877778999998765311100 11245788999999988877764 469999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEecCccHHHHHhcCeEEEEec-CCEEEEEec
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGREVYVGP 1080 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~tH~~~~~~~~~~D~v~~l~~-gG~~~~~G~ 1080 (1106)
||+|||||+.+|+||||||||+|||+.++..++++|++++ +.|.|||+||||++ .+...||++++|+. .|+++..|+
T Consensus 479 Rv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~ 557 (607)
T 3bk7_A 479 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALP 557 (607)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCC
Confidence 9999999999999999999999999999999999999986 46999999999997 47788999999973 267778888
Q ss_pred CCCc
Q 001291 1081 LGHH 1084 (1106)
Q Consensus 1081 ~~~~ 1084 (1106)
+.+.
T Consensus 558 p~~~ 561 (607)
T 3bk7_A 558 PMGM 561 (607)
T ss_dssp CEEH
T ss_pred HHHH
Confidence 7653
No 4
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.3e-58 Score=559.26 Aligned_cols=203 Identities=25% Similarity=0.301 Sum_probs=165.8
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++ + ..|+++||+|++||++||+||||||||||+++|+|..++ .+|+|.+
T Consensus 287 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~----- 345 (538)
T 1yqt_A 287 LVTYPRLVKDYG-------------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEW----- 345 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBCCCCC-----
T ss_pred EEEEeeEEEEEC-------------C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEE-----
Confidence 467778776542 2 368999999999999999999999999999999997653 3677764
Q ss_pred ChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 923 KQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 923 ~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
...+||++|++...+.+||.|++........ . ..+.++++++.+++.+..++.+ .+|||||||
T Consensus 346 -----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~q 408 (538)
T 1yqt_A 346 -----DLTVAYKPQYIKADYEGTVYELLSKIDASKL----N---SNFYKTELLKPLGIIDLYDREV-----NELSGGELQ 408 (538)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH----T---CHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHH
T ss_pred -----CceEEEEecCCcCCCCCcHHHHHHhhhccCC----C---HHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHH
Confidence 1358999999877778999888764311110 0 1235678899999987777664 469999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEecCccHHHHHhcCeEEEEec-CCEEEEEec
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGREVYVGP 1080 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~tH~~~~~~~~~~D~v~~l~~-gG~~~~~G~ 1080 (1106)
||+|||||+.+|++|||||||+|||+.++..|+++|++++ +.|.|||+||||++ ++...||++++|++ .|+++..|+
T Consensus 409 rv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~ 487 (538)
T 1yqt_A 409 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALP 487 (538)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCC
Confidence 9999999999999999999999999999999999999986 45999999999997 47788999999984 267888888
Q ss_pred CCCc
Q 001291 1081 LGHH 1084 (1106)
Q Consensus 1081 ~~~~ 1084 (1106)
+.+.
T Consensus 488 ~~~~ 491 (538)
T 1yqt_A 488 PMGM 491 (538)
T ss_dssp CEEH
T ss_pred HHHH
Confidence 7653
No 5
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.7e-57 Score=543.75 Aligned_cols=215 Identities=21% Similarity=0.247 Sum_probs=169.4
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.+++++..++ + ..|+++||+|++||++||+||||||||||+++|+|..++ .+|+|.+++
T Consensus 269 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~--- 329 (538)
T 3ozx_A 269 KMKWTKIIKKLG-------------D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGSVTPEK--- 329 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SBCCEESSC---
T ss_pred eEEEcceEEEEC-------------C-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECC---
Confidence 466677665442 1 357888999999999999999999999999999998764 478888754
Q ss_pred ChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 923 KQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 923 ~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
+.++|++|+....+..||+|++.+..... ... ....++++++.+++.+..++.+ .+|||||||
T Consensus 330 ------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~~--~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~Q 392 (538)
T 3ozx_A 330 ------QILSYKPQRIFPNYDGTVQQYLENASKDA----LST--SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQ 392 (538)
T ss_dssp ------CCEEEECSSCCCCCSSBHHHHHHHHCSST----TCT--TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHH
T ss_pred ------eeeEeechhcccccCCCHHHHHHHhhhhc----cch--hHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHH
Confidence 24799999877666789999997642111 001 1234678899999988877764 469999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEecC-CEEEEEec
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG-GREVYVGP 1080 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~g-G~~~~~G~ 1080 (1106)
||+|||||+.+|+||||||||+|||+.++..++++|+++++ .|.|||+||||++ ++...|||+++|+.+ |.....++
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATS 471 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCC
Confidence 99999999999999999999999999999999999999974 5899999999997 477889999999742 44555555
Q ss_pred CCCchhHHHHHHHh
Q 001291 1081 LGHHSCHLISYFEV 1094 (1106)
Q Consensus 1081 ~~~~~~~~~~yf~~ 1094 (1106)
+......+..|+..
T Consensus 472 ~~~~~~~~~~~~~~ 485 (538)
T 3ozx_A 472 PVTLKTGMNEFLRE 485 (538)
T ss_dssp CEEHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhh
Confidence 54433445556543
No 6
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=7.3e-56 Score=555.09 Aligned_cols=184 Identities=22% Similarity=0.268 Sum_probs=151.1
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCC-CCCCCCCH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHD-NHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 243 (1106)
+.+|+|+|+.+++|++++|+|||||||||||++|+| |+| +|.+... ...++|++|+. ..++.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBH
T ss_pred EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc---ceeEEEEcccccccccCCcH
Confidence 469999999999999999999999999999999995 222 3333211 12478999874 67889999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc-ccccccccCccCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADTMVGDEMRR 322 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~r 322 (1106)
.|++.+ ...+ . ...++.+++.+||+ ...+..+++
T Consensus 514 ~e~l~~--~~~~----------~-----------------------------~~~v~~~L~~lgL~~~~~~~~~~~---- 548 (986)
T 2iw3_A 514 LDFVFE--SGVG----------T-----------------------------KEAIKDKLIEFGFTDEMIAMPISA---- 548 (986)
T ss_dssp HHHHHT--TCSS----------C-----------------------------HHHHHHHHHHTTCCHHHHHSBGGG----
T ss_pred HHHHHH--hhcC----------H-----------------------------HHHHHHHHHHcCCChhhhcCCccc----
Confidence 999975 1110 0 12356789999994 677888876
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCe
Q 001291 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 402 (1106)
|||||||||+||++|+.+|++|||||||+|||+.++.++.+.|++ . +.++++++|+..++.++||+|++|++|+
T Consensus 549 -LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~-g~tvIivSHdl~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 549 -LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----C-GITSITISHDSVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp -CCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----S-CSEEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----C-CCEEEEEECCHHHHHHhCCEEEEEECCe
Confidence 999999999999999999999999999999999999999999986 2 4566678999999999999999999999
Q ss_pred EE-EEcCHHHHH
Q 001291 403 IV-YQGPRELVL 413 (1106)
Q Consensus 403 iv-~~G~~~~~~ 413 (1106)
++ +.|+++++.
T Consensus 623 iv~~~G~~~e~~ 634 (986)
T 2iw3_A 623 LRKYKGNFTEFV 634 (986)
T ss_dssp EEEEESCHHHHH
T ss_pred eecCCCCHHHHH
Confidence 97 789887654
No 7
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.1e-55 Score=550.76 Aligned_cols=215 Identities=22% Similarity=0.291 Sum_probs=138.8
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHH---------------------HHHhCCCCCCCC----ceeEEEECCcc
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLL---------------------LALAGKLDPSLK----VSGRVTYNGHN 218 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL---------------------~~L~G~~~~~~~----~~G~V~~~G~~ 218 (1106)
+.++|+|||++|++||+++|+||||||||||+ +++.|...|+.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45689999999999999999999999999998 788888777521 25677777765
Q ss_pred CCCCCccceEEEEcCCCC-------------------CCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCC
Q 001291 219 MDEFVPERTAAYISQHDN-------------------HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279 (1106)
Q Consensus 219 ~~~~~~~~~~~yv~Q~d~-------------------~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~ 279 (1106)
.... +++.++||+|... .++.+||+||+.+....... ..+...
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-----------~~~~~~------ 171 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT-----------EKEAQI------ 171 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred hhcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccc-----------hhhhHH------
Confidence 4322 2345566665432 24678999999874322100 000000
Q ss_pred ChHHHHHhhcchhhhHhHHHHHHHHHcCCccc-ccccccCccCCCCChhhhhHHHHHHHHhcCCc--cceeecCCCCCCH
Q 001291 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDIC-ADTMVGDEMRRGVSGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDS 356 (1106)
Q Consensus 280 d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~dt~vg~~~~rgLSGGqkqRvsia~al~~~p~--vllLDEptsgLD~ 356 (1106)
.+ ....+.... ..+++.+||++. .|+.+++ |||||||||+|||||+.+|+ +|||||||+|||+
T Consensus 172 -----~~---~~~~~~~~~-~~~l~~~gL~~~~~~~~~~~-----LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 172 -----AR---LILREIRDR-LGFLQNVGLDYLTLSRSAGT-----LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CHHH-HHHHHHTTCTTCCTTCBGGG-----SCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred -----HH---HHHHHHHHH-HHHHHHcCCchhhhcCCccc-----CCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCH
Confidence 00 000001111 235889999864 6787776 99999999999999999988 9999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe------cCCeEEEEcCHHHHH
Q 001291 357 STTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL------SDGQIVYQGPRELVL 413 (1106)
Q Consensus 357 ~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~ 413 (1106)
.++.++++.|+++.. . +.+|+.++|+...+ ..||+|++| ++|++++.|+++++.
T Consensus 238 ~~~~~l~~~l~~l~~-~-g~tvi~vtHd~~~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 238 RDNDRLIATLKSMRD-L-GNTLIVVEHDEDTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp GGHHHHHHHHHHHHH-T-TCEEEEECCCHHHH-HHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHH-hhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 999999999999854 3 45666788888765 569999999 899999999988763
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-55 Score=535.29 Aligned_cols=191 Identities=19% Similarity=0.190 Sum_probs=156.2
Q ss_pred EEeeeeeeeeeCC-----eEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCC
Q 001291 870 VLLNGVSGAFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFV 944 (1106)
Q Consensus 870 ~~L~~vs~~i~~G-----e~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~ 944 (1106)
.+++++||++.+| |++||+||||||||||+++|+|..++ .+|.. .. ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p--~~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP--DEGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC--SBCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC--CCCcC------cc----CCcEEEecccccccCCc
Confidence 4788999999888 78999999999999999999997664 24541 11 23589999987766667
Q ss_pred CHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC
Q 001291 945 TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1024 (1106)
Q Consensus 945 tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTs 1024 (1106)
||+|++.... +. ... ....++++++.+++.+..+..+ .+|||||||||+|||||+.+|+||||||||+
T Consensus 429 tv~e~~~~~~--~~--~~~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKKI--RG--QFL---NPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHHC--SS--TTT---SHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHHh--hc--ccc---cHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 9999875321 11 111 1234678999999998888774 4699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCceEEEEecCccHHHHHhcCeEEEEec-CCEEEEEecCCCch
Q 001291 1025 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGREVYVGPLGHHS 1085 (1106)
Q Consensus 1025 gLD~~~~~~i~~~l~~~~-~~g~tvi~~tH~~~~~~~~~~D~v~~l~~-gG~~~~~G~~~~~~ 1085 (1106)
|||+.++..++++|+++. +.|.|||+||||++ ++...|||+++|+. .|+++..|++.+-.
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~ 558 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLL 558 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHh
Confidence 999999999999999986 45999999999997 47788999999984 27889999887643
No 9
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=2.2e-42 Score=392.54 Aligned_cols=219 Identities=21% Similarity=0.270 Sum_probs=190.1
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.|+.. .+...+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 24 mi~v~~ls~~y~~~---------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p--~~G~I~i~G~~i 92 (366)
T 3tui_C 24 MIKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQEL 92 (366)
T ss_dssp CEEEEEEEEEEECS---------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred eEEEEeEEEEeCCC---------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 48899999887532 1235799999999999999999999999999999999998764 589999999886
Q ss_pred Chh------cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 001291 923 KQE------TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGL 996 (1106)
Q Consensus 923 ~~~------~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~L 996 (1106)
... ..++.+||++|++.+++.+||+||+.|+...+ ....++.+++++++++.++|.+..++.+ .+|
T Consensus 93 ~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~L 164 (366)
T 3tui_C 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYP-----SNL 164 (366)
T ss_dssp SSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCCT-----TTS
T ss_pred CcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhC
Confidence 431 23567999999999999999999999987654 2345666778999999999998887764 469
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEecCCEE
Q 001291 997 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGRE 1075 (1106)
Q Consensus 997 S~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~ 1075 (1106)
||||||||+|||||+.+|+||||||||||||+.++..|+++|+++.+ .|.|||+||||++ .+.+.||++++|++ |++
T Consensus 165 SGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~-G~i 242 (366)
T 3tui_C 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GEL 242 (366)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999975 4999999999997 47788999999985 799
Q ss_pred EEEecCC
Q 001291 1076 VYVGPLG 1082 (1106)
Q Consensus 1076 ~~~G~~~ 1082 (1106)
++.|+..
T Consensus 243 v~~g~~~ 249 (366)
T 3tui_C 243 IEQDTVS 249 (366)
T ss_dssp EECCBHH
T ss_pred EEEcCHH
Confidence 9999865
No 10
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=2.4e-42 Score=392.25 Aligned_cols=207 Identities=23% Similarity=0.331 Sum_probs=183.7
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc------cceEEEEcCCCCC
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHDNH 237 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~ 237 (1106)
.+++|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.+|||+|++.+
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l 116 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 116 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCC
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCcc
Confidence 457999999999999999999999999999999999999998 9999999999876532 3579999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccccccccc
Q 001291 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1106)
++.+||+||+.|+.+..+.. ..+...+++++|+.+||++.++..++
T Consensus 117 ~~~~TV~env~~~~~~~~~~----------------------------------~~~~~~~v~~lL~~vgL~~~~~~~~~ 162 (366)
T 3tui_C 117 LSSRTVFGNVALPLELDNTP----------------------------------KDEVKRRVTELLSLVGLGDKHDSYPS 162 (366)
T ss_dssp CTTSCHHHHHHHHHHHSCCC----------------------------------HHHHHHHHHHHHHHHTCGGGTTCCTT
T ss_pred CCCCCHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCchHhcCChh
Confidence 99999999999987654321 01123457889999999999998887
Q ss_pred CccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 001291 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1106)
Q Consensus 318 ~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 397 (1106)
+ |||||||||+|||||+.+|++|||||||||||+.++.+|++.|+++.+.. +.+|+.++|+..++..+||+|++
T Consensus 163 ~-----LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~-g~Tii~vTHdl~~~~~~aDrv~v 236 (366)
T 3tui_C 163 N-----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICDCVAV 236 (366)
T ss_dssp T-----SCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHS-CCEEEEEESCHHHHHHHCSEEEE
T ss_pred h-----CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEE
Confidence 6 99999999999999999999999999999999999999999999986543 55667789999999999999999
Q ss_pred ecCCeEEEEcCHHHHH
Q 001291 398 LSDGQIVYQGPRELVL 413 (1106)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1106)
|++|++++.|+++++.
T Consensus 237 l~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 237 ISNGELIEQDTVSEVF 252 (366)
T ss_dssp EETTEEEECCBHHHHH
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999999885
No 11
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=3.9e-42 Score=372.68 Aligned_cols=221 Identities=23% Similarity=0.350 Sum_probs=183.6
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|++++|+.. .....+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~~~---------~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~ 70 (235)
T 3tif_A 2 VKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP--TEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEeCCC---------CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEEcc
Confidence 5678888877531 0124699999999999999999999999999999999998764 5899999998764
Q ss_pred hhc------c-cceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccc-ccccCCCCCCC
Q 001291 924 QET------F-ARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR-QSLVGLPGVNG 995 (1106)
Q Consensus 924 ~~~------~-~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~-~~~~~~~g~~~ 995 (1106)
... . ++.+||++|++.+++.+||+||+.++...+.......+...+.+.++++.+++.+.. +..+ .+
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~ 145 (235)
T 3tif_A 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQ 145 (235)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GG
T ss_pred cCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCCh-----hh
Confidence 311 1 235999999999999999999999876543222334555667788999999998743 5543 46
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCE
Q 001291 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1106)
Q Consensus 996 LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~ 1074 (1106)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++|||++ +.+.||++++|++ |+
T Consensus 146 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~-G~ 222 (235)
T 3tif_A 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (235)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999986 4588999999985 79
Q ss_pred EEEEecCCC
Q 001291 1075 EVYVGPLGH 1083 (1106)
Q Consensus 1075 ~~~~G~~~~ 1083 (1106)
++..|+..+
T Consensus 223 i~~~~~~~~ 231 (235)
T 3tif_A 223 VEREEKLRG 231 (235)
T ss_dssp EEEEEECC-
T ss_pred EEEEcChhh
Confidence 999988653
No 12
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=8.3e-42 Score=390.40 Aligned_cols=215 Identities=26% Similarity=0.367 Sum_probs=189.4
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|++++|+ +..+|+||||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~yg-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~G~I~i~G~~~~ 68 (381)
T 3rlf_A 4 VQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI--TSGDLFIGEKRMN 68 (381)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCC--CCeEEEECCEECC
Confidence 67888887763 45799999999999999999999999999999999998764 5899999998865
Q ss_pred hh-cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 924 QE-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 924 ~~-~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
.. ..++.+|||+|++.++|.+||+||+.|+...+ ....++.+++++++++.++|.++.++.+ .+|||||||
T Consensus 69 ~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p-----~~LSGGqrQ 140 (381)
T 3rlf_A 69 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQ 140 (381)
T ss_dssp TCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCG-----GGSCHHHHH
T ss_pred CCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hHCCHHHHH
Confidence 42 23467999999999999999999999987654 2345666778999999999998888764 469999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
||+|||||+.+|+|||||||||+||+..+..+++.|+++.++ |.|||+||||++ ++...||++++|++ |+++..|++
T Consensus 141 RVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~~ 218 (381)
T 3rlf_A 141 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKP 218 (381)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEeCH
Confidence 999999999999999999999999999999999999999755 999999999997 58889999999985 799999986
Q ss_pred CC
Q 001291 1082 GH 1083 (1106)
Q Consensus 1082 ~~ 1083 (1106)
.+
T Consensus 219 ~~ 220 (381)
T 3rlf_A 219 LE 220 (381)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 13
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=7.4e-42 Score=388.35 Aligned_cols=207 Identities=23% Similarity=0.362 Sum_probs=181.3
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccC----CCCCc-cceEEEEcCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNM----DEFVP-ERTAAYISQHDNHIG 239 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~----~~~~~-~~~~~yv~Q~d~~~~ 239 (1106)
.++|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++ ....+ ++.+|||+|+..++|
T Consensus 17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p 93 (359)
T 3fvq_A 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFP 93 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccccchhhCCEEEEeCCCcCCC
Confidence 46999999999999999999999999999999999999998 99999999987 22222 467999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCc
Q 001291 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDE 319 (1106)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1106)
.+||+||+.|+.+.++... .+...+++++++.+||++.+|+.+++
T Consensus 94 ~ltV~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~r~~~~- 138 (359)
T 3fvq_A 94 HLTVYRNIAYGLGNGKGRT----------------------------------AQERQRIEAMLELTGISELAGRYPHE- 138 (359)
T ss_dssp TSCHHHHHHTTSTTSSCCS----------------------------------HHHHHHHHHHHHHHTCGGGTTSCGGG-
T ss_pred CCCHHHHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCCchHhcCChhh-
Confidence 9999999999865433210 11234578899999999999988876
Q ss_pred cCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEec
Q 001291 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1106)
Q Consensus 320 ~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 399 (1106)
|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+. .+++++.++|+..++..+||+|++|+
T Consensus 139 ----LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~-~g~tvi~vTHd~~ea~~~aDri~vl~ 213 (359)
T 3fvq_A 139 ----LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRA-NGKSAVFVSHDREEALQYADRIAVMK 213 (359)
T ss_dssp ----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHHHHHCSEEEEEE
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHCCEEEEEE
Confidence 9999999999999999999999999999999999999999888876554 35667778999999999999999999
Q ss_pred CCeEEEEcCHHHHHH
Q 001291 400 DGQIVYQGPRELVLE 414 (1106)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1106)
+|+++..|+++++..
T Consensus 214 ~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 214 QGRILQTASPHELYR 228 (359)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEEeCHHHHHh
Confidence 999999999998854
No 14
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.1e-41 Score=389.41 Aligned_cols=207 Identities=25% Similarity=0.355 Sum_probs=184.5
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1106)
..+|+|||+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.+|||+|+..++|.+||
T Consensus 16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV 92 (381)
T 3rlf_A 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 92 (381)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCH
T ss_pred EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCH
Confidence 46999999999999999999999999999999999999998 9999999999876544 4679999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
+||+.|+.+..+.. ..+...+++++++.+||++..+..+++
T Consensus 93 ~eni~~~~~~~~~~----------------------------------~~~~~~~v~~~l~~~~L~~~~~r~p~~----- 133 (381)
T 3rlf_A 93 AENMSFGLKLAGAK----------------------------------KEVINQRVNQVAEVLQLAHLLDRKPKA----- 133 (381)
T ss_dssp HHHHTHHHHHTTCC----------------------------------HHHHHHHHHHHHHHTTCGGGTTCCGGG-----
T ss_pred HHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCchhhcCChhH-----
Confidence 99999997765321 111234578899999999999988876
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
|||||||||+|||||+.+|++||||||||+||+..+.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 134 LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~~aDri~vl~~G~i 212 (381)
T 3rlf_A 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (381)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-CCEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhC-CCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999886543 45666789999999999999999999999
Q ss_pred EEEcCHHHHHH
Q 001291 404 VYQGPRELVLE 414 (1106)
Q Consensus 404 v~~G~~~~~~~ 414 (1106)
+..|+++++..
T Consensus 213 ~~~g~~~~l~~ 223 (381)
T 3rlf_A 213 AQVGKPLELYH 223 (381)
T ss_dssp EEEECHHHHHH
T ss_pred EEEeCHHHHHh
Confidence 99999999854
No 15
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.7e-41 Score=425.79 Aligned_cols=198 Identities=27% Similarity=0.376 Sum_probs=144.3
Q ss_pred EeeeeeeeeeCCeEEEEEcCCCCCHHHHH---------HhhhCCCC--C--ceeEE------EEEEcCccCChhc-----
Q 001291 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLM---------DVLAGRKT--G--GYITG------DIRISGYPKKQET----- 926 (1106)
Q Consensus 871 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl---------~~l~g~~~--~--~~~~G------~i~i~g~~~~~~~----- 926 (1106)
.|+|||++|++|+++||+|+||||||||+ +.+.+... + ..+.| .+.+++.+.....
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccccc
Confidence 58999999999999999999999999997 33433211 1 12223 3445544321000
Q ss_pred ---------------------------------------ccceEEEEccCCCCCC-------------------------
Q 001291 927 ---------------------------------------FARISGYCEQNDIHSP------------------------- 942 (1106)
Q Consensus 927 ---------------------------------------~~~~~g~v~q~~~~~~------------------------- 942 (1106)
..+..|++.++..+.+
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred chhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhcc
Confidence 0012366666655444
Q ss_pred -------CCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCC-
Q 001291 943 -------FVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANP- 1014 (1106)
Q Consensus 943 -------~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p- 1014 (1106)
.+||.|++.|... ......+.++|+.++|.... .+.+ +.+|||||||||+|||||+.+|
T Consensus 759 ~~i~~vl~~tv~eal~f~~~---------~~~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~p~ 825 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKN---------IPSIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKRDT 825 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTT---------CHHHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSCCC
T ss_pred CCHHHHhhCCHHHHHHHHhc---------chhHHHHHHHHHHcCCchhh---ccCC-ccCCCHHHHHHHHHHHHHhhCCC
Confidence 3577777765421 11223467889999996532 1222 3469999999999999999876
Q ss_pred --CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe-----cCCEEEEEecCCC
Q 001291 1015 --SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGREVYVGPLGH 1083 (1106)
Q Consensus 1015 --~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~-----~gG~~~~~G~~~~ 1083 (1106)
+||||||||+|||+.+.+.|+++|++++++|.|||+|+||++ +...||+|++|. +||++++.|++.+
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtpee 899 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTPEE 899 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCHHH
Confidence 699999999999999999999999999888999999999985 456799999994 4799999998753
No 16
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=5.7e-42 Score=378.57 Aligned_cols=217 Identities=24% Similarity=0.366 Sum_probs=185.8
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|++++|+. +..+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 7 ~l~i~~ls~~y~~------------~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p--~~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYSD------------GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP--SSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECTT------------SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEEEEEEEECC------------CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeEEEECCEEC
Confidence 4788999988741 23599999999999999999999999999999999998764 589999999886
Q ss_pred C--h---hcccceEEEEccCCC-CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 001291 923 K--Q---ETFARISGYCEQNDI-HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGL 996 (1106)
Q Consensus 923 ~--~---~~~~~~~g~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~L 996 (1106)
. . ..+++.+||++|++. .++.+||+||+.|+...+ ....++.++.++++++.++|.++.+..+ .+|
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 144 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPT-----HCL 144 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBG-----GGS
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccC
Confidence 3 2 234567999999873 344689999999986543 2345566678999999999998888764 469
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEecCccHHHHHhcCeEEEEecCCEE
Q 001291 997 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGRE 1075 (1106)
Q Consensus 997 S~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~ 1075 (1106)
||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++ ++|+|||++|||++ .+.+.||++++|++ |++
T Consensus 145 SgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~-G~i 222 (275)
T 3gfo_A 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRV 222 (275)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999997 56999999999998 47778999999985 799
Q ss_pred EEEecCCC
Q 001291 1076 VYVGPLGH 1083 (1106)
Q Consensus 1076 ~~~G~~~~ 1083 (1106)
++.|++.+
T Consensus 223 ~~~g~~~~ 230 (275)
T 3gfo_A 223 ILQGNPKE 230 (275)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99998764
No 17
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=7.3e-42 Score=388.40 Aligned_cols=216 Identities=27% Similarity=0.412 Sum_probs=186.7
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|++++|+ +..+|+||||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 4 ~l~i~~ls~~y~-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~G~I~i~G~~i 68 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-------------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP--DSGEISLSGKTI 68 (359)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC--SEEEEEETTEEE
T ss_pred EEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 367888887763 45799999999999999999999999999999999998764 589999999875
Q ss_pred ----Ch-hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001291 923 ----KQ-ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997 (1106)
Q Consensus 923 ----~~-~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS 997 (1106)
.. ...++.+|||+|++.++|.+||+||+.|+...+ ....++.+++++++++.++|.++.++.+ .+||
T Consensus 69 ~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LS 140 (359)
T 3fvq_A 69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYP-----HELS 140 (359)
T ss_dssp ESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSC
T ss_pred cccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCCh-----hhCC
Confidence 21 233567999999999999999999999986543 2334556678999999999999888774 4699
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEecCccHHHHHhcCeEEEEecCCEEE
Q 001291 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREV 1076 (1106)
Q Consensus 998 ~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~ 1076 (1106)
|||||||+|||||+.+|++|||||||||||+..+..+++.|+++. +.|.|||+||||++ ++...|||+++|++ |+++
T Consensus 141 GGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~-G~i~ 218 (359)
T 3fvq_A 141 GGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQ-GRIL 218 (359)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999887764 56999999999997 57889999999985 7999
Q ss_pred EEecCCC
Q 001291 1077 YVGPLGH 1083 (1106)
Q Consensus 1077 ~~G~~~~ 1083 (1106)
..|++.+
T Consensus 219 ~~g~~~e 225 (359)
T 3fvq_A 219 QTASPHE 225 (359)
T ss_dssp EEECHHH
T ss_pred EEeCHHH
Confidence 9998753
No 18
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.8e-41 Score=365.08 Aligned_cols=211 Identities=23% Similarity=0.282 Sum_probs=180.9
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.|+ ++++|+||||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 5 l~~~~l~~~y~-------------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 69 (224)
T 2pcj_A 5 LRAENIKKVIR-------------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAP--TEGKVFLEGKEVD 69 (224)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCC--SEEEEEETTEECC
T ss_pred EEEEeEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 67888887763 35699999999999999999999999999999999998764 5899999998764
Q ss_pred hh------ccc-ceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 001291 924 QE------TFA-RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGL 996 (1106)
Q Consensus 924 ~~------~~~-~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~L 996 (1106)
.. .++ +.+||++|++.+++.+||+||+.++...+. ...+..++.++++++.+++.+..+..+ .+|
T Consensus 70 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 141 (224)
T 2pcj_A 70 YTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMG---KPKKEAKERGEYLLSELGLGDKLSRKP-----YEL 141 (224)
T ss_dssp SSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGS
T ss_pred CCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhC
Confidence 21 122 569999999988889999999998764431 233444567899999999998877764 469
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEE
Q 001291 997 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREV 1076 (1106)
Q Consensus 997 S~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~ 1076 (1106)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||++. + +.||++++|++ |+++
T Consensus 142 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~-~-~~~d~v~~l~~-G~i~ 218 (224)
T 2pcj_A 142 SGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL-A-ELTHRTLEMKD-GKVV 218 (224)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-H-TTSSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH-H-HhCCEEEEEEC-CEEE
Confidence 9999999999999999999999999999999999999999999998779999999999863 4 78999999985 7999
Q ss_pred EEec
Q 001291 1077 YVGP 1080 (1106)
Q Consensus 1077 ~~G~ 1080 (1106)
+.|+
T Consensus 219 ~~g~ 222 (224)
T 2pcj_A 219 GEIT 222 (224)
T ss_dssp EEEE
T ss_pred EEee
Confidence 9885
No 19
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.7e-41 Score=371.11 Aligned_cols=215 Identities=26% Similarity=0.331 Sum_probs=183.9
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.|+ ++++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 24 ~l~i~~l~~~y~-------------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~i 88 (263)
T 2olj_A 24 MIDVHQLKKSFG-------------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF--DEGEIIIDGINL 88 (263)
T ss_dssp SEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEES
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEC
Confidence 378899988763 35699999999999999999999999999999999998764 589999999876
Q ss_pred C--h---hcccceEEEEccCCCCCCCCCHHHHHHHhh-hhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 001291 923 K--Q---ETFARISGYCEQNDIHSPFVTVYESLFYSA-WLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGL 996 (1106)
Q Consensus 923 ~--~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~L 996 (1106)
. . ..+++.+||++|++.+++.+||+||+.|+. ..+ ....+..++.++++++.++|.+..+..+ .+|
T Consensus 89 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 160 (263)
T 2olj_A 89 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYP-----DSL 160 (263)
T ss_dssp SSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred CCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCh-----hhC
Confidence 3 1 123457999999998888999999999864 222 1233444567899999999988877664 469
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEE
Q 001291 997 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREV 1076 (1106)
Q Consensus 997 S~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~ 1076 (1106)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++|||++ ++...||++++|++ |+++
T Consensus 161 SgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~ 238 (263)
T 2olj_A 161 SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDG-GYII 238 (263)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999999877999999999987 46778999999985 7999
Q ss_pred EEecCC
Q 001291 1077 YVGPLG 1082 (1106)
Q Consensus 1077 ~~G~~~ 1082 (1106)
+.|+..
T Consensus 239 ~~g~~~ 244 (263)
T 2olj_A 239 EEGKPE 244 (263)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 988754
No 20
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=3.1e-41 Score=371.52 Aligned_cols=214 Identities=21% Similarity=0.254 Sum_probs=183.3
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.|+ +.++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 7 l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~ 71 (262)
T 1b0u_A 7 LHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGAIIVNGQNIN 71 (262)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEECC
T ss_pred EEEeeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEcc
Confidence 78889887763 35799999999999999999999999999999999998764 5899999998764
Q ss_pred h----------------hcccceEEEEccCCCCCCCCCHHHHHHHhh-hhcCCCCCChHHHHHHHHHHHHHcCCCcc-cc
Q 001291 924 Q----------------ETFARISGYCEQNDIHSPFVTVYESLFYSA-WLRLPPEVNSETRKMFIEEVMELVELKPL-RQ 985 (1106)
Q Consensus 924 ~----------------~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~~~l~~~-~~ 985 (1106)
. ..+++.+||++|++.+++.+||+||+.|+. ..+ ....+..++.++++++.++|.+. .+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~ 148 (262)
T 1b0u_A 72 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQG 148 (262)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred ccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhc
Confidence 1 123457999999998889999999999864 222 12334445678999999999887 77
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCe
Q 001291 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1065 (1106)
Q Consensus 986 ~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~ 1065 (1106)
+.+ .+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++|||++ ++...||+
T Consensus 149 ~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~ 222 (262)
T 1b0u_A 149 KYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 222 (262)
T ss_dssp SCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSE
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 664 469999999999999999999999999999999999999999999999877999999999987 46778999
Q ss_pred EEEEecCCEEEEEecCC
Q 001291 1066 LFLMKRGGREVYVGPLG 1082 (1106)
Q Consensus 1066 v~~l~~gG~~~~~G~~~ 1082 (1106)
+++|++ |++++.|+..
T Consensus 223 v~~l~~-G~i~~~g~~~ 238 (262)
T 1b0u_A 223 VIFLHQ-GKIEEEGDPE 238 (262)
T ss_dssp EEEEET-TEEEEEECHH
T ss_pred EEEEEC-CEEEEeCCHH
Confidence 999985 7999998764
No 21
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=4.4e-41 Score=371.50 Aligned_cols=207 Identities=25% Similarity=0.339 Sum_probs=177.8
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCC-----CccceEEEEcCCC-CCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF-----VPERTAAYISQHD-NHI 238 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d-~~~ 238 (1106)
..+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.+|||+|++ ..+
T Consensus 21 ~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~ 97 (275)
T 3gfo_A 21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQL 97 (275)
T ss_dssp CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTC
T ss_pred CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccHHHHhCcEEEEEcCccccc
Confidence 35999999999999999999999999999999999999998 99999999987421 1235799999985 345
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccC
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1106)
+.+||+||+.|+....+.. ..+...+++.+++.+||++..+..+++
T Consensus 98 ~~~tv~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~L~~~~~~~~~~ 143 (275)
T 3gfo_A 98 FSASVYQDVSFGAVNMKLP----------------------------------EDEIRKRVDNALKRTGIEHLKDKPTHC 143 (275)
T ss_dssp CSSBHHHHHHHHHHTSCCC----------------------------------HHHHHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred ccCcHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCchhhcCCccc
Confidence 5899999999987654321 011234577889999999999988876
Q ss_pred ccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe
Q 001291 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1106)
Q Consensus 319 ~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 398 (1106)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+.. +++|+.++|+..++..+||+|++|
T Consensus 144 -----LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~-g~tvi~vtHdl~~~~~~~drv~~l 217 (275)
T 3gfo_A 144 -----LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKEL-GITIIIATHDIDIVPLYCDNVFVM 217 (275)
T ss_dssp -----SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHH-CCEEEEEESCCSSGGGGCSEEEEE
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhC-CCEEEEEecCHHHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999999986334 456666889999999999999999
Q ss_pred cCCeEEEEcCHHHHHH
Q 001291 399 SDGQIVYQGPRELVLE 414 (1106)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1106)
++|++++.|+++++..
T Consensus 218 ~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 218 KEGRVILQGNPKEVFA 233 (275)
T ss_dssp ETTEEEEEECHHHHTH
T ss_pred ECCEEEEECCHHHHhc
Confidence 9999999999998754
No 22
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.8e-41 Score=367.25 Aligned_cols=215 Identities=23% Similarity=0.310 Sum_probs=184.4
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.|+ ++++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 15 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~ 79 (256)
T 1vpl_A 15 AVVVKDLRKRIG-------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP--SSGIVTVFGKNV 79 (256)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEET
T ss_pred eEEEEEEEEEEC-------------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 478899988763 35799999999999999999999999999999999998764 589999999876
Q ss_pred Ch--hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 001291 923 KQ--ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQ 1000 (1106)
Q Consensus 923 ~~--~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gq 1000 (1106)
.. ...++.+||++|++.+++.+||+||+.|....+. ...+..++.++++++.++|.+..++.+ .+|||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq 151 (256)
T 1vpl_A 80 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGM 151 (256)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHH
T ss_pred CccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHH
Confidence 42 2345679999999998888999999988754431 223344566889999999998877764 4699999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEec
Q 001291 1001 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1106)
Q Consensus 1001 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~ 1080 (1106)
||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++|||++ ++...||++++|++ |++++.|+
T Consensus 152 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 229 (256)
T 1vpl_A 152 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 229 (256)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEEC-CEEEEecC
Confidence 99999999999999999999999999999999999999999877999999999987 46667999999985 79999887
Q ss_pred CC
Q 001291 1081 LG 1082 (1106)
Q Consensus 1081 ~~ 1082 (1106)
..
T Consensus 230 ~~ 231 (256)
T 1vpl_A 230 VE 231 (256)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 23
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=5.9e-41 Score=363.43 Aligned_cols=207 Identities=23% Similarity=0.289 Sum_probs=172.6
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-------cceEEEEcCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQHDNH 237 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1106)
.++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l 94 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCC
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCcc
Confidence 56999999999999999999999999999999999999998 9999999998876543 2359999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccc-ccccc
Q 001291 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDIC-ADTMV 316 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~dt~v 316 (1106)
++.+||+||+.++......+.. ...+....+..+++.+||.+. .+..+
T Consensus 95 ~~~~tv~enl~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~l~~~~l~~~~~~~~~ 143 (235)
T 3tif_A 95 IPLLTALENVELPLIFKYRGAM-------------------------------SGEERRKRALECLKMAELEERFANHKP 143 (235)
T ss_dssp CTTSCHHHHHHHHHHTCSSSCC-------------------------------CHHHHHHHHHHHHHHTTCCGGGTTCCG
T ss_pred CCCCcHHHHHHHHHHhhhccCC-------------------------------CHHHHHHHHHHHHHHCCCChhhhhCCh
Confidence 9999999999998654311000 001122356778999999875 47777
Q ss_pred cCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEE
Q 001291 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396 (1106)
Q Consensus 317 g~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 396 (1106)
++ |||||||||+|||||+.+|++|||||||+|||+.++.++++.|+++.+..+ .+|+.++|+.. +..+||+|+
T Consensus 144 ~~-----LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g-~tvi~vtHd~~-~~~~~d~i~ 216 (235)
T 3tif_A 144 NQ-----LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDG-KTVVVVTHDIN-VARFGERII 216 (235)
T ss_dssp GG-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC-CEEEEECSCHH-HHTTSSEEE
T ss_pred hh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEcCCHH-HHHhCCEEE
Confidence 65 999999999999999999999999999999999999999999999865434 45556778776 458999999
Q ss_pred EecCCeEEEEcCHHHH
Q 001291 397 LLSDGQIVYQGPRELV 412 (1106)
Q Consensus 397 lL~~G~iv~~G~~~~~ 412 (1106)
+|++|+++..|+.+++
T Consensus 217 ~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 217 YLKDGEVEREEKLRGF 232 (235)
T ss_dssp EEETTEEEEEEECC--
T ss_pred EEECCEEEEEcChhhh
Confidence 9999999999987764
No 24
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=8e-41 Score=381.29 Aligned_cols=207 Identities=27% Similarity=0.375 Sum_probs=181.7
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++++||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (359)
T 2yyz_A 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTV 92 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCH
T ss_pred EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999998 9999999999866543 4679999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
+||+.|+.+..+.. + .+...+++++++.+||++..+..+++
T Consensus 93 ~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L~~~~~r~~~~----- 133 (359)
T 2yyz_A 93 FENIAFPLRARRIS----------K------------------------DEVEKRVVEIARKLLIDNLLDRKPTQ----- 133 (359)
T ss_dssp HHHHHGGGSSSCSH----------H------------------------HHTTHHHHHHHHHTTCGGGTTSCGGG-----
T ss_pred HHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCchHhcCChhh-----
Confidence 99999986543210 0 11224577899999999999988876
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 134 LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~~~~~~~adri~vl~~G~i 212 (359)
T 2yyz_A 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQEL-GITSVYVTHDQAEAMTMASRIAVFNQGKL 212 (359)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-CCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999876543 45566688999999999999999999999
Q ss_pred EEEcCHHHHHH
Q 001291 404 VYQGPRELVLE 414 (1106)
Q Consensus 404 v~~G~~~~~~~ 414 (1106)
+..|+++++..
T Consensus 213 ~~~g~~~~l~~ 223 (359)
T 2yyz_A 213 VQYGTPDEVYD 223 (359)
T ss_dssp EEEECHHHHHH
T ss_pred EEeCCHHHHHh
Confidence 99999998853
No 25
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=3.8e-41 Score=370.17 Aligned_cols=219 Identities=23% Similarity=0.275 Sum_probs=184.1
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.|+ ++++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~ 71 (257)
T 1g6h_A 7 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDI 71 (257)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEeeeEEEEC-------------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEC
Confidence 378899988763 35699999999999999999999999999999999998764 589999999876
Q ss_pred Chh----cccceEEEEccCCCCCCCCCHHHHHHHhhhh-cCCC---------CCChHHHHHHHHHHHHHcCCCccccccc
Q 001291 923 KQE----TFARISGYCEQNDIHSPFVTVYESLFYSAWL-RLPP---------EVNSETRKMFIEEVMELVELKPLRQSLV 988 (1106)
Q Consensus 923 ~~~----~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~-~~~~---------~~~~~~~~~~v~~~l~~~~l~~~~~~~~ 988 (1106)
... ..++.+||++|++.+++.+||+||+.++... +... .......++.++++++.+++.+..++.+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 151 (257)
T 1g6h_A 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151 (257)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence 431 2345699999999888889999999987532 1110 0122344567889999999988877764
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEE
Q 001291 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1068 (1106)
Q Consensus 989 ~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~ 1068 (1106)
.+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++|||++ ++...||++++
T Consensus 152 -----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~ 225 (257)
T 1g6h_A 152 -----GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 225 (257)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred -----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 469999999999999999999999999999999999999999999999877999999999998 46778999999
Q ss_pred EecCCEEEEEecCCC
Q 001291 1069 MKRGGREVYVGPLGH 1083 (1106)
Q Consensus 1069 l~~gG~~~~~G~~~~ 1083 (1106)
|++ |++++.|+..+
T Consensus 226 l~~-G~i~~~g~~~~ 239 (257)
T 1g6h_A 226 MFN-GQIIAEGRGEE 239 (257)
T ss_dssp EET-TEEEEEEESHH
T ss_pred EEC-CEEEEEeCHHH
Confidence 985 78999988643
No 26
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=2e-40 Score=411.91 Aligned_cols=196 Identities=29% Similarity=0.356 Sum_probs=148.0
Q ss_pred EeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhh-C--------C-CCCc---eeEE------EEEEcCccCChhc-----
Q 001291 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-G--------R-KTGG---YITG------DIRISGYPKKQET----- 926 (1106)
Q Consensus 871 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~-g--------~-~~~~---~~~G------~i~i~g~~~~~~~----- 926 (1106)
.|+||||+|++|+++||+|+||||||||+++|+ | . ..++ .+.| .|.+++.++....
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 589999999999999999999999999999864 1 0 1122 2344 4788887652100
Q ss_pred -----------------ccceEEEEccCCCCC----------------------C-------------------------
Q 001291 927 -----------------FARISGYCEQNDIHS----------------------P------------------------- 942 (1106)
Q Consensus 927 -----------------~~~~~g~v~q~~~~~----------------------~------------------------- 942 (1106)
..+..||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 013357776643211 0
Q ss_pred -------CCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001291 943 -------FVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-LRQSLVGLPGVNGLSTEQRKRLTIAVELVANP 1014 (1106)
Q Consensus 943 -------~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~-~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p 1014 (1106)
.+|+.|++.|... . . ....+.++++.++|.. ..++.+ .+|||||||||+||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~-~--~~~~~~~~L~~~gL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------I-P--KIKRKLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------C-H--HHHHHHHHHHHTTCSSSBTTCCG-----GGCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHhhhcCHHHHHHHHhc------c-h--hHHHHHHHHHHcCCCcccccCch-----hhCCHHHHHHHHHHHHHhcCC
Confidence 3577777765321 1 1 1223568899999986 445543 469999999999999999875
Q ss_pred ---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe-----cCCEEEEEecCC
Q 001291 1015 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGREVYVGPLG 1082 (1106)
Q Consensus 1015 ---~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~-----~gG~~~~~G~~~ 1082 (1106)
+||||||||+|||+.+...++++|++++++|.|||+||||++ ..+.||++++|. ++|++++.|++.
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~~ 938 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTPE 938 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEEcCCCCCCCCEEEEecCHH
Confidence 999999999999999999999999999888999999999986 347899999995 478999999864
No 27
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=8.4e-41 Score=363.64 Aligned_cols=214 Identities=23% Similarity=0.321 Sum_probs=180.6
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.|+ ++++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 70 (240)
T 1ji0_A 6 VLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred eEEEEeEEEEEC-------------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEC
Confidence 378889988763 35699999999999999999999999999999999998764 589999999876
Q ss_pred Chh---c-ccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcC-CCcccccccCCCCCCCCC
Q 001291 923 KQE---T-FARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVE-LKPLRQSLVGLPGVNGLS 997 (1106)
Q Consensus 923 ~~~---~-~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-l~~~~~~~~~~~g~~~LS 997 (1106)
... . .++.+||++|++.+++.+||+||+.++.... ...+..++.++++++.++ +.+..++.+ .+||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS 141 (240)
T 1ji0_A 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQLG-----GTLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSBS-----SSSC
T ss_pred CCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCCh-----hhCC
Confidence 431 1 2345999999998888999999999864211 122334556788999995 877766653 4699
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEE
Q 001291 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1106)
Q Consensus 998 ~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~ 1077 (1106)
|||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||++ ++...||++++|++ |++++
T Consensus 142 gGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~ 219 (240)
T 1ji0_A 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVL 219 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999878999999999986 47788999999985 79999
Q ss_pred EecCC
Q 001291 1078 VGPLG 1082 (1106)
Q Consensus 1078 ~G~~~ 1082 (1106)
.|+..
T Consensus 220 ~g~~~ 224 (240)
T 1ji0_A 220 EGKAS 224 (240)
T ss_dssp EEEHH
T ss_pred EcCHH
Confidence 88764
No 28
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.2e-40 Score=363.82 Aligned_cols=206 Identities=23% Similarity=0.351 Sum_probs=177.3
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCC--CCC---ccceEEEEcCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMD--EFV---PERTAAYISQHDNHIG 239 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~--~~~---~~~~~~yv~Q~d~~~~ 239 (1106)
+++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++. ... .++.++||+|++.+++
T Consensus 37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~ 113 (263)
T 2olj_A 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFP 113 (263)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCC
Confidence 36999999999999999999999999999999999999998 999999999874 111 1356999999998999
Q ss_pred CCCHHHHHHHHH-HhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccC
Q 001291 240 EMTVRETLAFAA-RCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1106)
Q Consensus 240 ~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1106)
.+||+||+.|+. +..+.. . .+....++.+++.+||++..+..+++
T Consensus 114 ~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~L~~~~~~~~~~ 159 (263)
T 2olj_A 114 HMTVLNNITLAPMKVRKWP----------R------------------------EKAEAKAMELLDKVGLKDKAHAYPDS 159 (263)
T ss_dssp TSCHHHHHHHHHHHTSCCC----------H------------------------HHHHHHHHHHHHHTTCGGGTTSCGGG
T ss_pred CCCHHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHCCCchHhcCChhh
Confidence 999999999964 332210 0 01123467789999999988888776
Q ss_pred ccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe
Q 001291 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1106)
Q Consensus 319 ~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 398 (1106)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+ . +++|+.++|+..++..+||+|++|
T Consensus 160 -----LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~-~-g~tvi~vtHd~~~~~~~~d~v~~l 232 (263)
T 2olj_A 160 -----LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN-E-GMTMVVVTHEMGFAREVGDRVLFM 232 (263)
T ss_dssp -----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-T-TCEEEEECSCHHHHHHHCSEEEEE
T ss_pred -----CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-C-CCEEEEEcCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999998854 3 556677899999999999999999
Q ss_pred cCCeEEEEcCHHHHHH
Q 001291 399 SDGQIVYQGPRELVLE 414 (1106)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1106)
++|++++.|+++++..
T Consensus 233 ~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 233 DGGYIIEEGKPEDLFD 248 (263)
T ss_dssp ETTEEEEEECHHHHHH
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999988753
No 29
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=6.2e-41 Score=381.16 Aligned_cols=217 Identities=24% Similarity=0.377 Sum_probs=187.4
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.|+ ++..+|+||||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 14 ~l~~~~l~~~y~------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i 79 (355)
T 1z47_A 14 TIEFVGVEKIYP------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP--TKGDVWIGGKRV 79 (355)
T ss_dssp EEEEEEEEECCT------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred eEEEEEEEEEEc------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEEC
Confidence 578899887762 123589999999999999999999999999999999998764 589999999876
Q ss_pred Ch-hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001291 923 KQ-ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQR 1001 (1106)
Q Consensus 923 ~~-~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqr 1001 (1106)
.. ...++.+|||+|++.+++.+||+||+.|+...+ ....++.+++++++++.++|.++.++.+ .+||||||
T Consensus 80 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~ 151 (355)
T 1z47_A 80 TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFP-----HELSGGQQ 151 (355)
T ss_dssp TTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHH
T ss_pred CcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHH
Confidence 43 223567999999999999999999999986543 2334555678999999999998888764 46999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEec
Q 001291 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1106)
Q Consensus 1002 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~ 1080 (1106)
|||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++...||++++|++ |+++..|+
T Consensus 152 QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~ 229 (355)
T 1z47_A 152 QRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHE-GNVEQFGT 229 (355)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998754 999999999987 57788999999985 79999998
Q ss_pred CCC
Q 001291 1081 LGH 1083 (1106)
Q Consensus 1081 ~~~ 1083 (1106)
+.+
T Consensus 230 ~~~ 232 (355)
T 1z47_A 230 PEE 232 (355)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 30
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.2e-40 Score=366.98 Aligned_cols=204 Identities=26% Similarity=0.348 Sum_probs=179.7
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
+++|+|||+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (266)
T 4g1u_C 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPF 100 (266)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCC
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHhheEEEEecCCccCCCC
Confidence 46999999999999999999999999999999999999998 9999999999876543 35699999998888899
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccC
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
||+||+.|+...... .+....++.+++.+||.+..+..+++
T Consensus 101 tv~e~l~~~~~~~~~------------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~--- 141 (266)
T 4g1u_C 101 SVSEVIQMGRAPYGG------------------------------------SQDRQALQQVMAQTDCLALAQRDYRV--- 141 (266)
T ss_dssp BHHHHHHGGGTTSCS------------------------------------TTHHHHHHHHHHHTTCSTTTTSBGGG---
T ss_pred CHHHHHHhhhhhcCc------------------------------------HHHHHHHHHHHHHcCChhHhcCCccc---
Confidence 999999987542210 01123467789999999999888765
Q ss_pred CCCChhhhhHHHHHHHHhc------CCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001291 322 RGVSGGQKKRVTTGEMMVG------PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~~------~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 395 (1106)
|||||||||+|||||+. +|++|||||||+|||+.++.++++.|+++.+ .++.+|+.++|+..++..+||+|
T Consensus 142 --LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~-~~~~tvi~vtHdl~~~~~~~d~v 218 (266)
T 4g1u_C 142 --LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTR-QEPLAVCCVLHDLNLAALYADRI 218 (266)
T ss_dssp --CCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHH-HSSEEEEEECSCHHHHHHHCSEE
T ss_pred --CCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-cCCCEEEEEEcCHHHHHHhCCEE
Confidence 99999999999999999 9999999999999999999999999998865 45667788999999999999999
Q ss_pred EEecCCeEEEEcCHHHHH
Q 001291 396 ILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1106)
++|++|++++.|+++++.
T Consensus 219 ~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 219 MLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEEETTEEEEEECHHHHC
T ss_pred EEEECCEEEEEcCHHHHh
Confidence 999999999999999874
No 31
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.1e-40 Score=379.28 Aligned_cols=207 Identities=25% Similarity=0.387 Sum_probs=182.2
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1106)
+++|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..+++.+||
T Consensus 28 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 104 (355)
T 1z47_A 28 ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTV 104 (355)
T ss_dssp TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCH
T ss_pred CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChhhCcEEEEecCcccCCCCCH
Confidence 45999999999999999999999999999999999999998 9999999998865433 4679999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
+||+.|+.+..+.. ..+...+++++++.+||++..|..+++
T Consensus 105 ~eni~~~l~~~~~~----------------------------------~~~~~~~v~~~l~~~gL~~~~~r~~~~----- 145 (355)
T 1z47_A 105 YDNVSFGLREKRVP----------------------------------KDEMDARVRELLRFMRLESYANRFPHE----- 145 (355)
T ss_dssp HHHHHHHHHHTTCC----------------------------------HHHHHHHHHHHHHHTTCGGGTTSCGGG-----
T ss_pred HHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCChhHhcCCccc-----
Confidence 99999987654321 011234577899999999999988876
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 146 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~~~a~~~adri~vl~~G~i 224 (355)
T 1z47_A 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEM-GVTSVFVTHDQEEALEVADRVLVLHEGNV 224 (355)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHH-TCEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999886543 45566689999999999999999999999
Q ss_pred EEEcCHHHHHH
Q 001291 404 VYQGPRELVLE 414 (1106)
Q Consensus 404 v~~G~~~~~~~ 414 (1106)
+..|+++++..
T Consensus 225 ~~~g~~~~l~~ 235 (355)
T 1z47_A 225 EQFGTPEEVYE 235 (355)
T ss_dssp EEEECHHHHHH
T ss_pred EEEcCHHHHHh
Confidence 99999998853
No 32
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=8.2e-41 Score=381.18 Aligned_cols=215 Identities=25% Similarity=0.344 Sum_probs=184.8
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|++++|+ +..+|+||||+|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 4 IRVVNLKKYFG-------------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP--TSGEIYFDDVLVN 68 (359)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCC--CccEEEECCEECC
Confidence 67888887763 35799999999999999999999999999999999998764 5899999998764
Q ss_pred hh-cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 924 QE-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 924 ~~-~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
.. ..++.+|||+|++.+++.+||+||+.|+...+ ....++.+++++++++.++|.++.++.+ .+|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~Q 140 (359)
T 2yyz_A 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQ 140 (359)
T ss_dssp TSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 32 23467999999999999999999999975432 1223334567899999999998888764 469999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++...||++++|++ |+++..|++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 218 (359)
T 2yyz_A 141 RVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQ-GKLVQYGTP 218 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998754 999999999987 57789999999985 799999986
Q ss_pred CC
Q 001291 1082 GH 1083 (1106)
Q Consensus 1082 ~~ 1083 (1106)
.+
T Consensus 219 ~~ 220 (359)
T 2yyz_A 219 DE 220 (359)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 33
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=9.9e-41 Score=380.95 Aligned_cols=215 Identities=26% Similarity=0.371 Sum_probs=186.1
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.|+ +..+|+||||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~ 68 (362)
T 2it1_A 4 IKLENIVKKFG-------------NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP--TSGKIYFDEKDVT 68 (362)
T ss_dssp EEEEEEEEESS-------------SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 67788887653 34699999999999999999999999999999999998764 5899999998764
Q ss_pred hh-cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 924 QE-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 924 ~~-~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
.. ..++.+|||+|++.+++.+||+||+.|+...+. ...++.+++++++++.++|.++.++.+ .+|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 140 (362)
T 2it1_A 69 ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRK---APREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQ 140 (362)
T ss_dssp TSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHH
T ss_pred cCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHH
Confidence 32 234679999999999999999999999865432 234555677899999999998888764 469999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
||+|||||+.+|++|||||||||||+..+..+++.|+++.++ |.|||++|||++ ++...||++++|++ |+++..|++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 218 (362)
T 2it1_A 141 RVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIRE-GEILQVGTP 218 (362)
T ss_dssp HHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999999999999999998654 999999999987 57789999999985 799999986
Q ss_pred CC
Q 001291 1082 GH 1083 (1106)
Q Consensus 1082 ~~ 1083 (1106)
.+
T Consensus 219 ~~ 220 (362)
T 2it1_A 219 DE 220 (362)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 34
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=8.3e-41 Score=368.40 Aligned_cols=224 Identities=24% Similarity=0.329 Sum_probs=189.0
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|++|.++ ++++|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~~-------------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHVQ-------------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP--SHGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCC--SSCEEEETTEET
T ss_pred eEEEEeEEEEeC-------------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 478889988763 45799999999999999999999999999999999998764 489999999886
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001291 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999 (1106)
Q Consensus 923 ~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~G 999 (1106)
.. ...++.+||++|++.+.+.+||+||+.++.... .....++.++++++.+++.++.++.+ .+||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 145 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDY-----RVLSGG 145 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBG-----GGCCHH
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 43 234566899999998888899999999875432 12234556889999999998887764 469999
Q ss_pred HHHHHHHHHHHhc------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecC
Q 001291 1000 QRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 1000 qrqrl~iA~aL~~------~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~g 1072 (1106)
|||||+|||||+. +|++|||||||+|||+.++..+++.|++++++ |+|||++|||++ ++...||++++|++
T Consensus 146 q~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~- 223 (266)
T 4g1u_C 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQ- 223 (266)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEET-
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEEC-
Confidence 9999999999999 99999999999999999999999999999765 579999999997 47788999999985
Q ss_pred CEEEEEecCCCc--hhHHHHHHH
Q 001291 1073 GREVYVGPLGHH--SCHLISYFE 1093 (1106)
Q Consensus 1073 G~~~~~G~~~~~--~~~~~~yf~ 1093 (1106)
|++++.|+..+. ...+.++|.
T Consensus 224 G~i~~~g~~~~~~~~~~l~~~~~ 246 (266)
T 4g1u_C 224 GKLVACGTPEEVLNAETLTQWYQ 246 (266)
T ss_dssp TEEEEEECHHHHCCHHHHHHHCC
T ss_pred CEEEEEcCHHHHhCcHHHHHHhC
Confidence 799999987642 334556664
No 35
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.6e-40 Score=357.50 Aligned_cols=200 Identities=28% Similarity=0.377 Sum_probs=172.0
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-------cceEEEEcCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQHDNH 237 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l 93 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYL 93 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCC
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHHHHhCcEEEEecCccc
Confidence 46999999999999999999999999999999999999998 9999999998865432 1569999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccccccccc
Q 001291 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1106)
++.+||+||+.|+....+.. . .+....++.+++.+||.+..+..++
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 139 (224)
T 2pcj_A 94 IPELTALENVIVPMLKMGKP----------K------------------------KEAKERGEYLLSELGLGDKLSRKPY 139 (224)
T ss_dssp CTTSCHHHHHHHHHHHTTCC----------H------------------------HHHHHHHHHHHHHTTCTTCTTCCGG
T ss_pred CCCCCHHHHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhhCChh
Confidence 99999999999976543210 0 0112346778999999999888887
Q ss_pred CccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 001291 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1106)
Q Consensus 318 ~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 397 (1106)
+ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. +.+|+.++|+..++ ++||+|++
T Consensus 140 ~-----LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~~~-~~~d~v~~ 211 (224)
T 2pcj_A 140 E-----LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG--GTSIVMVTHERELA-ELTHRTLE 211 (224)
T ss_dssp G-----SCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHH-TTSSEEEE
T ss_pred h-----CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEcCCHHHH-HhCCEEEE
Confidence 6 9999999999999999999999999999999999999999999988653 45566678887776 89999999
Q ss_pred ecCCeEEEEcCH
Q 001291 398 LSDGQIVYQGPR 409 (1106)
Q Consensus 398 L~~G~iv~~G~~ 409 (1106)
|++|+++++|++
T Consensus 212 l~~G~i~~~g~~ 223 (224)
T 2pcj_A 212 MKDGKVVGEITR 223 (224)
T ss_dssp EETTEEEEEEEC
T ss_pred EECCEEEEEeee
Confidence 999999999864
No 36
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.5e-40 Score=379.83 Aligned_cols=207 Identities=27% Similarity=0.381 Sum_probs=181.3
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCC------CCc-cceEEEEcCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE------FVP-ERTAAYISQHDNH 237 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~------~~~-~~~~~yv~Q~d~~ 237 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.. ..+ ++.+|||+|+..+
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l 92 (372)
T 1g29_1 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (372)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccccCCHhHCCEEEEeCCCcc
Confidence 46999999999999999999999999999999999999998 9999999988754 322 4679999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccccccccc
Q 001291 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1106)
++++||+||+.|+.+..+.. ..+...+++++++.+||++..+..++
T Consensus 93 ~~~ltv~eni~~~~~~~~~~----------------------------------~~~~~~~v~~~l~~~~L~~~~~r~~~ 138 (372)
T 1g29_1 93 YPHMTVYDNIAFPLKLRKVP----------------------------------RQEIDQRVREVAELLGLTELLNRKPR 138 (372)
T ss_dssp CTTSCHHHHHHHHHHHTTCC----------------------------------HHHHHHHHHHHHHHHTCGGGTTCCGG
T ss_pred CCCCCHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHCCCchHhcCCcc
Confidence 99999999999987654321 01122457788999999999998887
Q ss_pred CccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 001291 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1106)
Q Consensus 318 ~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 397 (1106)
+ |||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++
T Consensus 139 ~-----LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~~~a~~~adri~v 212 (372)
T 1g29_1 139 E-----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL-GVTTIYVTHDQVEAMTMGDRIAV 212 (372)
T ss_dssp G-----SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHCSEEEE
T ss_pred c-----CCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEECCCHHHHHHhCCEEEE
Confidence 6 99999999999999999999999999999999999999999999876543 45566688999999999999999
Q ss_pred ecCCeEEEEcCHHHHHH
Q 001291 398 LSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 398 L~~G~iv~~G~~~~~~~ 414 (1106)
|++|+++..|+++++..
T Consensus 213 l~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 213 MNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EeCCEEEEeCCHHHHHh
Confidence 99999999999998853
No 37
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.5e-40 Score=379.48 Aligned_cols=207 Identities=26% Similarity=0.391 Sum_probs=182.2
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..+++++||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (362)
T 2it1_A 16 FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTV 92 (362)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCH
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999998 9999999999865543 4679999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
+||+.|+.+..+.. ..+...+++++++.+||++..+..+++
T Consensus 93 ~eni~~~~~~~~~~----------------------------------~~~~~~~v~~~l~~~~L~~~~~r~~~~----- 133 (362)
T 2it1_A 93 YKNIAFPLELRKAP----------------------------------REEIDKKVREVAKMLHIDKLLNRYPWQ----- 133 (362)
T ss_dssp HHHHHHHHHHTTCC----------------------------------HHHHHHHHHHHHHHTTCTTCTTCCGGG-----
T ss_pred HHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCchHhhCChhh-----
Confidence 99999987654321 011234577899999999999988876
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|++
T Consensus 134 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~vl~~G~i 212 (362)
T 2it1_A 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELG-ITTVYVTHDQAEALAMADRIAVIREGEI 212 (362)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCC-CEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998865434 5566688999999999999999999999
Q ss_pred EEEcCHHHHHH
Q 001291 404 VYQGPRELVLE 414 (1106)
Q Consensus 404 v~~G~~~~~~~ 414 (1106)
+..|+++++..
T Consensus 213 ~~~g~~~~~~~ 223 (362)
T 2it1_A 213 LQVGTPDEVYY 223 (362)
T ss_dssp EEEECHHHHHH
T ss_pred EEEcCHHHHHh
Confidence 99999998853
No 38
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.7e-40 Score=381.27 Aligned_cols=215 Identities=26% Similarity=0.337 Sum_probs=186.0
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|++++|+ +..+|+||||+|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~~~ 68 (372)
T 1g29_1 4 VRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP--SRGQIYIGDKLVA 68 (372)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEEE
T ss_pred EEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCC--CccEEEECCEECc
Confidence 67888887763 35799999999999999999999999999999999998764 5899999998753
Q ss_pred h-------hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 001291 924 Q-------ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGL 996 (1106)
Q Consensus 924 ~-------~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~L 996 (1106)
. ...++.+|||+|++.+++.+||+||+.|+...+. ...++.+++++++++.++|.++.++.+ .+|
T Consensus 69 ~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~L 140 (372)
T 1g29_1 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGLTELLNRKP-----REL 140 (372)
T ss_dssp EGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGS
T ss_pred cccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCCc-----ccC
Confidence 2 1234679999999999999999999999865442 234455677899999999998888764 469
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEE
Q 001291 997 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGRE 1075 (1106)
Q Consensus 997 S~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~ 1075 (1106)
||||||||+|||||+.+|++||||||||+||+..+..+++.|+++.++ |.|||++|||++ ++...||++++|++ |++
T Consensus 141 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i 218 (372)
T 1g29_1 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GVL 218 (372)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeC-CEE
Confidence 999999999999999999999999999999999999999999998754 999999999987 57789999999985 799
Q ss_pred EEEecCCC
Q 001291 1076 VYVGPLGH 1083 (1106)
Q Consensus 1076 ~~~G~~~~ 1083 (1106)
+..|++.+
T Consensus 219 ~~~g~~~~ 226 (372)
T 1g29_1 219 QQVGSPDE 226 (372)
T ss_dssp EEEECHHH
T ss_pred EEeCCHHH
Confidence 99998653
No 39
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.8e-40 Score=365.37 Aligned_cols=206 Identities=25% Similarity=0.335 Sum_probs=176.9
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCC----------CC------ccceE
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE----------FV------PERTA 228 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~----------~~------~~~~~ 228 (1106)
+++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. .. .++.+
T Consensus 19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (262)
T 1b0u_A 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 95 (262)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccccccccccChhhHHHHhcce
Confidence 36999999999999999999999999999999999999998 9999999988751 11 13569
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHH-HhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcC
Q 001291 229 AYISQHDNHIGEMTVRETLAFAA-RCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLG 307 (1106)
Q Consensus 229 ~yv~Q~d~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg 307 (1106)
+||+|++.+++.+||+||+.|+. +..+.. . .+....++.+++.+|
T Consensus 96 ~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~ 141 (262)
T 1b0u_A 96 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------K------------------------HDARERALKYLAKVG 141 (262)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCC----------H------------------------HHHHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCcHHHHHHhhHHHhcCCC----------H------------------------HHHHHHHHHHHHHcC
Confidence 99999998999999999999964 322210 0 011234677899999
Q ss_pred Cccc-ccccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChh
Q 001291 308 LDIC-ADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAP 386 (1106)
Q Consensus 308 L~~~-~dt~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~ 386 (1106)
|++. .+..+++ |||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+ . +++|+.++|+..
T Consensus 142 L~~~~~~~~~~~-----LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~-~-g~tvi~vtHd~~ 214 (262)
T 1b0u_A 142 IDERAQGKYPVH-----LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-E-GKTMVVVTHEMG 214 (262)
T ss_dssp CCHHHHTSCGGG-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-T-TCCEEEECSCHH
T ss_pred CCchhhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHH
Confidence 9988 8888876 999999999999999999999999999999999999999999998864 3 455666889999
Q ss_pred HHHhhcCeEEEecCCeEEEEcCHHHHHH
Q 001291 387 ETYNLFDDIILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 387 ~~~~~~D~vilL~~G~iv~~G~~~~~~~ 414 (1106)
++..+||+|++|++|++++.|+++++..
T Consensus 215 ~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 242 (262)
T 1b0u_A 215 FARHVSSHVIFLHQGKIEEEGDPEQVFG 242 (262)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999988753
No 40
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.4e-40 Score=381.01 Aligned_cols=207 Identities=24% Similarity=0.356 Sum_probs=175.0
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++++||
T Consensus 24 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 100 (372)
T 1v43_A 24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 100 (372)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999998 9999999999866543 4679999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
+||+.|+.+..+.. ..+...+++.+++.+||++..+..+++
T Consensus 101 ~eni~~~~~~~~~~----------------------------------~~~~~~~v~~~l~~~~L~~~~~r~~~~----- 141 (372)
T 1v43_A 101 YENIAFPLKIKKFP----------------------------------KDEIDKRVRWAAELLQIEELLNRYPAQ----- 141 (372)
T ss_dssp HHHHHTTCC--CCC----------------------------------HHHHHHHHHHHHHHTTCGGGTTSCTTT-----
T ss_pred HHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCChhHhcCChhh-----
Confidence 99999975433210 011234577899999999999988876
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 142 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~~~a~~~adri~vl~~G~i 220 (372)
T 1v43_A 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL-KVTTIYVTHDQVEAMTMGDRIAVMNRGQL 220 (372)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999886543 45566688999999999999999999999
Q ss_pred EEEcCHHHHHH
Q 001291 404 VYQGPRELVLE 414 (1106)
Q Consensus 404 v~~G~~~~~~~ 414 (1106)
+..|+++++..
T Consensus 221 ~~~g~~~~l~~ 231 (372)
T 1v43_A 221 LQIGSPTEVYL 231 (372)
T ss_dssp EEEECHHHHHH
T ss_pred EEeCCHHHHHh
Confidence 99999998853
No 41
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.5e-40 Score=380.81 Aligned_cols=215 Identities=22% Similarity=0.339 Sum_probs=180.2
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.|+ +..+|+||||+|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 12 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~ 76 (372)
T 1v43_A 12 VKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP--TEGRIYFGDRDVT 76 (372)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CceEEEECCEECC
Confidence 78889887763 35699999999999999999999999999999999998764 5899999998764
Q ss_pred hh-cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 924 QE-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 924 ~~-~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
.. ..++.+|||+|++.+++.+||+||+.|+...+ ....++.+++++++++.++|.++.++.+ .+|||||||
T Consensus 77 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 148 (372)
T 1v43_A 77 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQ 148 (372)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 32 23467999999999999999999999975433 2334555677999999999998888764 469999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
||+|||||+.+|++||||||||+||+..+..+++.|+++.++ |.|||++|||++ ++...||++++|++ |+++..|++
T Consensus 149 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 226 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSP 226 (372)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998755 999999999987 57789999999985 799999986
Q ss_pred CC
Q 001291 1082 GH 1083 (1106)
Q Consensus 1082 ~~ 1083 (1106)
.+
T Consensus 227 ~~ 228 (372)
T 1v43_A 227 TE 228 (372)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 42
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.6e-40 Score=359.48 Aligned_cols=206 Identities=26% Similarity=0.312 Sum_probs=177.8
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC--ccceEEEEcCCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1106)
+++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++.+|
T Consensus 28 ~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~lt 104 (256)
T 1vpl_A 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQ 104 (256)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSB
T ss_pred EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCc
Confidence 46999999999999999999999999999999999999998 999999999875421 1357999999998999999
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCC
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1106)
|+||+.|+....+.. . .+....++.+++.+||++..++.+++
T Consensus 105 v~enl~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~~~~---- 146 (256)
T 1vpl_A 105 GIEYLRFVAGFYASS----------S------------------------SEIEEMVERATEIAGLGEKIKDRVST---- 146 (256)
T ss_dssp HHHHHHHHHHHHCCC----------H------------------------HHHHHHHHHHHHHHCCGGGGGSBGGG----
T ss_pred HHHHHHHHHHHcCCC----------h------------------------HHHHHHHHHHHHHCCCchHhcCChhh----
Confidence 999999975433210 0 01123467789999999998888766
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCe
Q 001291 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 402 (1106)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.. . +++|+.++|+..++..+||+|++|++|+
T Consensus 147 -LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tiiivtHd~~~~~~~~d~v~~l~~G~ 223 (256)
T 1vpl_A 147 -YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-E-GLTILVSSHNMLEVEFLCDRIALIHNGT 223 (256)
T ss_dssp -CCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEEECCHHHHTTTCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-C-CCEEEEEcCCHHHHHHHCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999998754 3 4566668899999999999999999999
Q ss_pred EEEEcCHHHHHH
Q 001291 403 IVYQGPRELVLE 414 (1106)
Q Consensus 403 iv~~G~~~~~~~ 414 (1106)
+++.|+++++.+
T Consensus 224 i~~~g~~~~~~~ 235 (256)
T 1vpl_A 224 IVETGTVEELKE 235 (256)
T ss_dssp EEEEEEHHHHHH
T ss_pred EEEecCHHHHHH
Confidence 999999988754
No 43
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.1e-40 Score=380.65 Aligned_cols=215 Identities=27% Similarity=0.377 Sum_probs=185.5
Q ss_pred eeecceeeeeeccchhhhcccCCCceE--EeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLV--LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~--~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
+.++|+++.++ +.. +|+||||+|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+
T Consensus 4 l~i~~l~~~y~-------------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~ 68 (353)
T 1oxx_K 4 IIVKNVSKVFK-------------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP--STGELYFDDRL 68 (353)
T ss_dssp EEEEEEEEEEG-------------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC--SEEEEEETTEE
T ss_pred EEEEeEEEEEC-------------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEE
Confidence 67888887763 234 99999999999999999999999999999999998764 58999999987
Q ss_pred CCh------hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 001291 922 KKQ------ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNG 995 (1106)
Q Consensus 922 ~~~------~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~ 995 (1106)
... ...++.+|||+|++.+++.+||+||+.|+...+ ....++.+++++++++.++|.++.++.+ .+
T Consensus 69 i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~ 140 (353)
T 1oxx_K 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RE 140 (353)
T ss_dssp EEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred CcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hh
Confidence 532 224567999999999999999999999976433 2334555677899999999998888764 46
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCE
Q 001291 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1106)
Q Consensus 996 LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~ 1074 (1106)
|||||||||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++...||++++|++ |+
T Consensus 141 LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~ 218 (353)
T 1oxx_K 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GK 218 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998654 999999999987 57789999999985 79
Q ss_pred EEEEecCCC
Q 001291 1075 EVYVGPLGH 1083 (1106)
Q Consensus 1075 ~~~~G~~~~ 1083 (1106)
++..|++.+
T Consensus 219 i~~~g~~~~ 227 (353)
T 1oxx_K 219 LVQVGKPED 227 (353)
T ss_dssp EEEEECHHH
T ss_pred EEEEcCHHH
Confidence 999998653
No 44
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.7e-40 Score=378.94 Aligned_cols=205 Identities=21% Similarity=0.295 Sum_probs=179.7
Q ss_pred eeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCC-----CC-ccceEEEEcCCCCCCCC
Q 001291 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE-----FV-PERTAAYISQHDNHIGE 240 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~-----~~-~~~~~~yv~Q~d~~~~~ 240 (1106)
+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .. .++.++||+|+..++++
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ 96 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPN 96 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTT
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccccccCChhhCCEEEEeCCCccCCC
Confidence 999999999999999999999999999999999999998 9999999988743 22 24689999999999999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCcc
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1106)
+||+||+.|+.+..+.. ..+...+++++++.+||++..+..+++
T Consensus 97 ltv~eni~~~~~~~~~~----------------------------------~~~~~~~v~~~l~~~~L~~~~~~~~~~-- 140 (353)
T 1oxx_K 97 LTAFENIAFPLTNMKMS----------------------------------KEEIRKRVEEVAKILDIHHVLNHFPRE-- 140 (353)
T ss_dssp SCHHHHHHGGGTTSSCC----------------------------------HHHHHHHHHHHHHHTTCGGGTTSCGGG--
T ss_pred CCHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCchHhcCChhh--
Confidence 99999999986543210 011234577899999999999988876
Q ss_pred CCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC
Q 001291 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1106)
Q Consensus 321 ~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 400 (1106)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++
T Consensus 141 ---LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~~~~~~~adri~vl~~ 216 (353)
T 1oxx_K 141 ---LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL-GVTLLVVSHDPADIFAIADRVGVLVK 216 (353)
T ss_dssp ---SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHH-CCEEEEEESCHHHHHHHCSEEEEEET
T ss_pred ---CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999886543 45566688999999999999999999
Q ss_pred CeEEEEcCHHHHHH
Q 001291 401 GQIVYQGPRELVLE 414 (1106)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (1106)
|+++..|+++++..
T Consensus 217 G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 217 GKLVQVGKPEDLYD 230 (353)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEEcCHHHHHh
Confidence 99999999998853
No 45
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2e-40 Score=376.86 Aligned_cols=201 Identities=24% Similarity=0.361 Sum_probs=178.9
Q ss_pred eeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCHHH
Q 001291 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTVRE 245 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 245 (1106)
+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..+++++||+|
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 91 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHH
Confidence 999999999999999999999999999999999999998 9999999998865433 467999999999999999999
Q ss_pred HHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCC
Q 001291 246 TLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVS 325 (1106)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLS 325 (1106)
|+.|+.+..+... . .+++++++.+||++..|..+++ ||
T Consensus 92 nl~~~~~~~~~~~------------------------------------~-~~v~~~l~~~~L~~~~~~~~~~-----LS 129 (348)
T 3d31_A 92 NLEFGMRMKKIKD------------------------------------P-KRVLDTARDLKIEHLLDRNPLT-----LS 129 (348)
T ss_dssp HHHHHHHHHCCCC------------------------------------H-HHHHHHHHHTTCTTTTTSCGGG-----SC
T ss_pred HHHHHHHHcCCCH------------------------------------H-HHHHHHHHHcCCchHhcCChhh-----CC
Confidence 9999865432100 0 2467789999999999988876 99
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeEEE
Q 001291 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVY 405 (1106)
Q Consensus 326 GGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~ 405 (1106)
|||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|+++.
T Consensus 130 gGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~-g~tii~vTHd~~~~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN-KLTVLHITHDQTEARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHCSEEEEESSSCEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999886543 4566668899999999999999999999999
Q ss_pred EcCHHHHH
Q 001291 406 QGPRELVL 413 (1106)
Q Consensus 406 ~G~~~~~~ 413 (1106)
.|+++++.
T Consensus 209 ~g~~~~~~ 216 (348)
T 3d31_A 209 VGKPEEIF 216 (348)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99999884
No 46
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=9.5e-40 Score=406.84 Aligned_cols=107 Identities=27% Similarity=0.347 Sum_probs=93.5
Q ss_pred HHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcC---CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 001291 969 MFIEEVMELVELKPL-RQSLVGLPGVNGLSTEQRKRLTIAVELVAN---PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1044 (1106)
Q Consensus 969 ~~v~~~l~~~~l~~~-~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~---p~illLDEPTsgLD~~~~~~i~~~l~~~~~~ 1044 (1106)
..+.++|+.++|... .++. +.+|||||||||+||++|+.+ |+||||||||+|||+.+...++++|++++++
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~ 782 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQP-----ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccccCC-----cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 357899999999863 3443 246999999999999999996 6999999999999999999999999999888
Q ss_pred CceEEEEecCccHHHHHhcCeEEEEe-----cCCEEEEEecCC
Q 001291 1045 GRTVVCTIHQPSIDIFEAFDELFLMK-----RGGREVYVGPLG 1082 (1106)
Q Consensus 1045 g~tvi~~tH~~~~~~~~~~D~v~~l~-----~gG~~~~~G~~~ 1082 (1106)
|.|||+||||++ .+ +.||++++|. ++|++++.|+..
T Consensus 783 G~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~ 823 (842)
T 2vf7_A 783 GNTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGGRLVAQGTPA 823 (842)
T ss_dssp TCEEEEECCCHH-HH-TTCSEEEEECSSSGGGCCSEEEEECHH
T ss_pred CCEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCCEEEEEcCHH
Confidence 999999999986 35 7899999995 478999998754
No 47
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=3.3e-40 Score=362.64 Aligned_cols=216 Identities=27% Similarity=0.360 Sum_probs=175.9
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc----cceEEEEcCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1106)
+++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 96 (257)
T 1g6h_A 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 96 (257)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCC
Confidence 36999999999999999999999999999999999999998 9999999998865432 3469999999988999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCcc
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1106)
+||+||+.|+......+. ....-. .. .. ....+....++.+++.+||++..++.+++
T Consensus 97 ~tv~enl~~~~~~~~~~~----~~~~~~----~~-~~------------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 153 (257)
T 1g6h_A 97 MTVLENLLIGEICPGESP----LNSLFY----KK-WI------------PKEEEMVEKAFKILEFLKLSHLYDRKAGE-- 153 (257)
T ss_dssp SBHHHHHHGGGTSTTSCH----HHHHHH----CS-SC------------CCCHHHHHHHHHHHHHTTCGGGTTSBGGG--
T ss_pred CcHHHHHHHHHhhhccCc----cccccc----cc-cc------------CCHHHHHHHHHHHHHHcCCchhhCCCchh--
Confidence 999999998643200000 000000 00 00 00011223567889999999999888876
Q ss_pred CCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC
Q 001291 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1106)
Q Consensus 321 ~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 400 (1106)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+ . +++|+.++|+..++..+||+|++|++
T Consensus 154 ---LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tvi~vtHd~~~~~~~~d~v~~l~~ 228 (257)
T 1g6h_A 154 ---LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-K-GITFLIIEHRLDIVLNYIDHLYVMFN 228 (257)
T ss_dssp ---SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEECSCCSTTGGGCSEEEEEET
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999998864 3 45666688999999999999999999
Q ss_pred CeEEEEcCHHH
Q 001291 401 GQIVYQGPREL 411 (1106)
Q Consensus 401 G~iv~~G~~~~ 411 (1106)
|++++.|++++
T Consensus 229 G~i~~~g~~~~ 239 (257)
T 1g6h_A 229 GQIIAEGRGEE 239 (257)
T ss_dssp TEEEEEEESHH
T ss_pred CEEEEEeCHHH
Confidence 99999999888
No 48
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=8.1e-40 Score=355.85 Aligned_cols=204 Identities=24% Similarity=0.359 Sum_probs=173.6
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc----cceEEEEcCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 95 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHHHHhCCEEEEecCCccCCC
Confidence 46999999999999999999999999999999999999998 9999999998865432 2359999999989999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcC-CcccccccccCc
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLG-LDICADTMVGDE 319 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~ 319 (1106)
+||+||+.|+.... .. . .+....++.+++.++ |++..++.+++
T Consensus 96 ltv~enl~~~~~~~-~~-~---------------------------------~~~~~~~~~~l~~~~~l~~~~~~~~~~- 139 (240)
T 1ji0_A 96 LTVYENLMMGAYNR-KD-K---------------------------------EGIKRDLEWIFSLFPRLKERLKQLGGT- 139 (240)
T ss_dssp SBHHHHHHGGGTTC-CC-S---------------------------------SHHHHHHHHHHHHCHHHHTTTTSBSSS-
T ss_pred CcHHHHHHHhhhcC-CC-H---------------------------------HHHHHHHHHHHHHcccHhhHhcCChhh-
Confidence 99999999863111 00 0 011234566788894 98888877765
Q ss_pred cCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEec
Q 001291 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1106)
Q Consensus 320 ~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 399 (1106)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+ . +++|+.++|+..++..+||+|++|+
T Consensus 140 ----LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~-g~tvi~vtHd~~~~~~~~d~v~~l~ 213 (240)
T 1ji0_A 140 ----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-E-GTTILLVEQNALGALKVAHYGYVLE 213 (240)
T ss_dssp ----SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-T-TCCEEEEESCHHHHHHHCSEEEEEE
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999998764 3 4556667889999999999999999
Q ss_pred CCeEEEEcCHHHHH
Q 001291 400 DGQIVYQGPRELVL 413 (1106)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1106)
+|++++.|+++++.
T Consensus 214 ~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 214 TGQIVLEGKASELL 227 (240)
T ss_dssp TTEEEEEEEHHHHH
T ss_pred CCEEEEEcCHHHHh
Confidence 99999999988774
No 49
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=3.1e-40 Score=375.38 Aligned_cols=210 Identities=20% Similarity=0.281 Sum_probs=181.0
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.|+ +. +|+||||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~-------------~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~~~g~~i~ 65 (348)
T 3d31_A 2 IEIESLSRKWK-------------NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEEEECS-------------SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCC--CCcEEEECCEECC
Confidence 45677776652 34 99999999999999999999999999999999998764 5899999998764
Q ss_pred h-hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 924 Q-ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 924 ~-~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
. ...++.+|||+|++.+++.+||+||+.|+...+.. ... ++++++++.++|.++.++.+ .+|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~---~~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~Q 134 (348)
T 3d31_A 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KDP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (348)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---CCH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred CCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC---CHH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 3 22356799999999999999999999998654421 111 56889999999998888764 469999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
||+|||||+.+|++|||||||||||+.++..+++.|+++.+ .|.|||++|||++ ++...||++++|++ |+++..|++
T Consensus 135 RvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 212 (348)
T 3d31_A 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (348)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999999999999865 4999999999987 57789999999975 789999976
Q ss_pred C
Q 001291 1082 G 1082 (1106)
Q Consensus 1082 ~ 1082 (1106)
.
T Consensus 213 ~ 213 (348)
T 3d31_A 213 E 213 (348)
T ss_dssp H
T ss_pred H
Confidence 5
No 50
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=7.6e-40 Score=358.28 Aligned_cols=219 Identities=27% Similarity=0.287 Sum_probs=174.0
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|++++|+ ++.+|+||||+|++||++||+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~ 70 (250)
T 2d2e_A 4 LEIRDLWASID-------------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENIL 70 (250)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECC
Confidence 67888887763 35699999999999999999999999999999999997211256899999998764
Q ss_pred hh---cc-cceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCC-CcccccccCCCCCCC-CC
Q 001291 924 QE---TF-ARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL-KPLRQSLVGLPGVNG-LS 997 (1106)
Q Consensus 924 ~~---~~-~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l-~~~~~~~~~~~g~~~-LS 997 (1106)
.. .. ++.++|++|++.+++.+||+||+.++...............+.++++++.+++ .+..++.+ .+ ||
T Consensus 71 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LS 145 (250)
T 2d2e_A 71 ELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEGFS 145 (250)
T ss_dssp TSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TCC--
T ss_pred CCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----ccCCC
Confidence 31 11 33589999999998999999999886532111111223345668899999999 47777653 35 99
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHh-cCeEEEEecCCEEE
Q 001291 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGGREV 1076 (1106)
Q Consensus 998 ~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~-~D~v~~l~~gG~~~ 1076 (1106)
|||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++|||++. +... ||++++|++ |+++
T Consensus 146 gGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~-~~~~~~d~v~~l~~-G~i~ 223 (250)
T 2d2e_A 146 GGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRI-LNYIQPDKVHVMMD-GRVV 223 (250)
T ss_dssp --HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGG-GGTSCCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhcCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999987679999999999973 5555 599999985 7999
Q ss_pred EEecCC
Q 001291 1077 YVGPLG 1082 (1106)
Q Consensus 1077 ~~G~~~ 1082 (1106)
+.|+..
T Consensus 224 ~~g~~~ 229 (250)
T 2d2e_A 224 ATGGPE 229 (250)
T ss_dssp EEESHH
T ss_pred EEeCHH
Confidence 998754
No 51
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=7.7e-40 Score=361.40 Aligned_cols=218 Identities=23% Similarity=0.319 Sum_probs=179.4
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.|+... ...+++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~I~~~g~~~~ 72 (266)
T 2yz2_A 3 IEVVNVSHIFHRGT--------PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGERKK 72 (266)
T ss_dssp EEEEEEEEEESTTS--------TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECC
T ss_pred EEEEEEEEEecCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEECc
Confidence 57788887764100 0015799999999999999999999999999999999998764 5899999998765
Q ss_pred hhcccceEEEEccCC-CCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCC--cccccccCCCCCCCCCHHH
Q 001291 924 QETFARISGYCEQND-IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK--PLRQSLVGLPGVNGLSTEQ 1000 (1106)
Q Consensus 924 ~~~~~~~~g~v~q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~--~~~~~~~~~~g~~~LS~Gq 1000 (1106)
...+++.+||++|++ ..++.+||+||+.|+.... ...+..++.++++++.++|. +..++.+ .+|||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq 143 (266)
T 2yz2_A 73 GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGE 143 (266)
T ss_dssp HHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHH
T ss_pred hHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHH
Confidence 433456799999985 4556789999998864322 11122234578999999998 7777664 4699999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEec
Q 001291 1001 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1106)
Q Consensus 1001 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~ 1080 (1106)
||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++|||++ .+...||++++|++ |++++.|+
T Consensus 144 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 221 (266)
T 2yz2_A 144 KRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGT 221 (266)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCC
Confidence 99999999999999999999999999999999999999999777999999999997 36667999999985 78998886
Q ss_pred CC
Q 001291 1081 LG 1082 (1106)
Q Consensus 1081 ~~ 1082 (1106)
..
T Consensus 222 ~~ 223 (266)
T 2yz2_A 222 RM 223 (266)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 52
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=6.8e-40 Score=355.58 Aligned_cols=209 Identities=22% Similarity=0.317 Sum_probs=177.0
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.|+ + +|+||||+|++ |++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~-------------~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 63 (240)
T 2onk_A 2 FLKVRAEKRLG-------------N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADIT 63 (240)
T ss_dssp CEEEEEEEEET-------------T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEeC-------------C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 46778877662 2 49999999999 99999999999999999999998764 4899999998764
Q ss_pred h-hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 924 Q-ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 924 ~-~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
. ...++.+||++|++.+++.+||+||+.|+...+ .....++.++++++.+++.+..++.+ .+|||||||
T Consensus 64 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkq 133 (240)
T 2onk_A 64 PLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQ 133 (240)
T ss_dssp TSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHH
T ss_pred cCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHH
Confidence 3 223467999999998889999999998864321 11222566889999999988877764 469999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
|++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++|||++ ++...||++++|++ |++++.|+.
T Consensus 134 Rv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 211 (240)
T 2onk_A 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999999999999998654 999999999987 47788999999985 799998875
Q ss_pred C
Q 001291 1082 G 1082 (1106)
Q Consensus 1082 ~ 1082 (1106)
.
T Consensus 212 ~ 212 (240)
T 2onk_A 212 K 212 (240)
T ss_dssp H
T ss_pred H
Confidence 4
No 53
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=5.1e-40 Score=364.31 Aligned_cols=229 Identities=22% Similarity=0.353 Sum_probs=183.7
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.|+ ++++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 21 ~l~~~~l~~~y~-------------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~ 85 (279)
T 2ihy_A 21 LIQLDQIGRMKQ-------------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA--TSGTVNLFGKMP 85 (279)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTBCC
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCeEEEECCEEc
Confidence 588999988763 35799999999999999999999999999999999998764 489999999876
Q ss_pred C--h---hcccceEEEEccCCCCC--CCCCHHHHHHHhhhhcCC-CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 001291 923 K--Q---ETFARISGYCEQNDIHS--PFVTVYESLFYSAWLRLP-PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVN 994 (1106)
Q Consensus 923 ~--~---~~~~~~~g~v~q~~~~~--~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~ 994 (1106)
. . ..+++.+||++|++... +.+||+||+.|+...... .....+..++.++++++.+++.+..++.+ .
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 160 (279)
T 2ihy_A 86 GKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI-----G 160 (279)
T ss_dssp C---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG-----G
T ss_pred ccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh-----h
Confidence 4 2 23456799999987543 346999999886321100 01112334566889999999988877764 4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceE--EEEecCccHHHHHhcCeEEEEecC
Q 001291 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV--VCTIHQPSIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 995 ~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tv--i~~tH~~~~~~~~~~D~v~~l~~g 1072 (1106)
+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|| |++|||++ ++...||++++|++
T Consensus 161 ~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~~- 238 (279)
T 2ihy_A 161 YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKD- 238 (279)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEET-
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 699999999999999999999999999999999999999999999997669999 99999987 46678999999985
Q ss_pred CEEEEEecCCCc--hhHHHHHHH
Q 001291 1073 GREVYVGPLGHH--SCHLISYFE 1093 (1106)
Q Consensus 1073 G~~~~~G~~~~~--~~~~~~yf~ 1093 (1106)
|++++.|+..+. ...+.++|.
T Consensus 239 G~i~~~g~~~~~~~~~~~~~~~~ 261 (279)
T 2ihy_A 239 GQSIQQGAVEDILTSENMSRFFQ 261 (279)
T ss_dssp TEEEEEEEHHHHCSHHHHHHHHT
T ss_pred CEEEEECCHHHHhccHHHHHHhC
Confidence 799999876542 233445553
No 54
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=5.7e-39 Score=400.43 Aligned_cols=197 Identities=26% Similarity=0.351 Sum_probs=144.8
Q ss_pred EeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhh-C----CC-----CCc---eeEE------EEEEcCccCChh------
Q 001291 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-G----RK-----TGG---YITG------DIRISGYPKKQE------ 925 (1106)
Q Consensus 871 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~-g----~~-----~~~---~~~G------~i~i~g~~~~~~------ 925 (1106)
+|+||||+|++|+++||+|+||||||||+++|+ | .. .++ .+.| .|.+++.++...
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~pa 736 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPA 736 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHH
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccchh
Confidence 489999999999999999999999999999963 2 11 112 1123 356666554210
Q ss_pred ----------------cccceEEEEccCCCCC----------------------C-------------------------
Q 001291 926 ----------------TFARISGYCEQNDIHS----------------------P------------------------- 942 (1106)
Q Consensus 926 ----------------~~~~~~g~v~q~~~~~----------------------~------------------------- 942 (1106)
...+..||++|...+. +
T Consensus 737 ty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 816 (993)
T 2ygr_A 737 TYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKG 816 (993)
T ss_dssp HHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhccC
Confidence 0012346666642210 1
Q ss_pred -------CCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001291 943 -------FVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-LRQSLVGLPGVNGLSTEQRKRLTIAVELVANP 1014 (1106)
Q Consensus 943 -------~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~-~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p 1014 (1106)
.+|+.|++.|... . . ....+.++++.++|.. ..+..+ .+|||||||||+||++|+.+|
T Consensus 817 ~si~dvl~ltv~e~l~~~~~------~-~--~~~~~~~~L~~lgL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p 882 (993)
T 2ygr_A 817 KTVSEVLDMSIEEAAEFFEP------I-A--GVHRYLRTLVDVGLGYVRLGQPA-----PTLSGGEAQRVKLASELQKRS 882 (993)
T ss_dssp BCHHHHHSSBHHHHHHHSTT------C-H--HHHHHHHHHHHTTGGGSBTTCCG-----GGSCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHHhhccHHHHHHHhhc------c-h--HHHHHHHHHHHcCCCcccccCcc-----ccCCHHHHHHHHHHHHHHhCC
Confidence 2466777655321 1 1 1223568899999976 444443 469999999999999999875
Q ss_pred ---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe-----cCCEEEEEecCCC
Q 001291 1015 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGREVYVGPLGH 1083 (1106)
Q Consensus 1015 ---~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~-----~gG~~~~~G~~~~ 1083 (1106)
+||||||||+|||+.+...++++|+++++.|.|||+||||++. .+.||++++|. ++|++++.|++.+
T Consensus 883 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~--i~~aDrIivL~p~gg~~~G~Iv~~G~~~e 957 (993)
T 2ygr_A 883 TGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDV--IKTSDWIIDLGPEGGAGGGTVVAQGTPED 957 (993)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH--HTTCSEEEEEESSSTTSCSEEEEEECHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH--HHhCCEEEEECCCcCCCCCEEEEecCHHH
Confidence 9999999999999999999999999998889999999999863 47899999995 4789999998653
No 55
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=4.7e-40 Score=367.74 Aligned_cols=213 Identities=26% Similarity=0.327 Sum_probs=175.9
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
..+.|+||+|.|+. +.++|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+
T Consensus 52 ~~i~~~~vs~~y~~------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~G~~ 117 (306)
T 3nh6_A 52 GRIEFENVHFSYAD------------GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI--SSGCIRIDGQD 117 (306)
T ss_dssp CCEEEEEEEEESST------------TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred CeEEEEEEEEEcCC------------CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCcEEEECCEE
Confidence 46899999998741 34699999999999999999999999999999999998764 58999999998
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccccc-------ccCCC
Q 001291 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS-------LVGLP 991 (1106)
Q Consensus 922 ~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~-------~~~~~ 991 (1106)
+.. ..+++.+|||+|++.+++ .||+||+.|+... .. .+.++++++.+++.+..+. .++..
T Consensus 118 i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~-----~~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~ 187 (306)
T 3nh6_A 118 ISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT-----AG----NDEVEAAAQAAGIHDAIMAFPEGYRTQVGER 187 (306)
T ss_dssp TTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT-----CC----HHHHHHHHHHHTCHHHHHHSTTGGGCEESTT
T ss_pred cccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhccc-----CC----HHHHHHHHHHhCcHHHHHhccchhhhHhcCC
Confidence 754 335667999999998874 6999999886421 11 2345677777777654432 23333
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
| .+|||||||||+|||||+.+|+|||||||||+||+.++..|++.|+++. +++|||+|||+++. + ..||+|++|++
T Consensus 188 g-~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~-~-~~aD~i~vl~~ 263 (306)
T 3nh6_A 188 G-LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAHRLST-V-VNADQILVIKD 263 (306)
T ss_dssp S-BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH-TTSEEEEECCSHHH-H-HTCSEEEEEET
T ss_pred c-CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEEcChHH-H-HcCCEEEEEEC
Confidence 2 4699999999999999999999999999999999999999999999986 47999999999973 4 45999999985
Q ss_pred CCEEEEEecCCC
Q 001291 1072 GGREVYVGPLGH 1083 (1106)
Q Consensus 1072 gG~~~~~G~~~~ 1083 (1106)
|++++.|+..+
T Consensus 264 -G~iv~~G~~~e 274 (306)
T 3nh6_A 264 -GCIVERGRHEA 274 (306)
T ss_dssp -TEEEEEECHHH
T ss_pred -CEEEEECCHHH
Confidence 79999998653
No 56
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2e-39 Score=351.91 Aligned_cols=202 Identities=20% Similarity=0.302 Sum_probs=174.3
Q ss_pred eeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC-ccceEEEEcCCCCCCCCCCHHH
Q 001291 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV-PERTAAYISQHDNHIGEMTVRE 245 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 245 (1106)
+|+|+|+++++ ++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++.+||+|
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 89 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYR 89 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHH
Confidence 49999999999 999999999999999999999999998 999999999875432 2467999999998999999999
Q ss_pred HHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCC
Q 001291 246 TLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVS 325 (1106)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLS 325 (1106)
|+.|+....+. .. ....++.+++.+||++..+..+++ ||
T Consensus 90 nl~~~~~~~~~----------~~--------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS 128 (240)
T 2onk_A 90 NIAYGLRNVER----------VE--------------------------RDRRVREMAEKLGIAHLLDRKPAR-----LS 128 (240)
T ss_dssp HHHTTCTTSCH----------HH--------------------------HHHHHHHHHHTTTCTTTTTCCGGG-----SC
T ss_pred HHHHHHHHcCC----------ch--------------------------HHHHHHHHHHHcCCHHHhcCChhh-----CC
Confidence 99986432210 00 023467789999999988888876 99
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeEEE
Q 001291 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVY 405 (1106)
Q Consensus 326 GGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~ 405 (1106)
|||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.+..+ ++|+.++|+..++..+||+|++|++|++++
T Consensus 129 gGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g-~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFD-VPILHVTHDLIEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHT-CCEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998765334 445557889999999999999999999999
Q ss_pred EcCHHHHHH
Q 001291 406 QGPRELVLE 414 (1106)
Q Consensus 406 ~G~~~~~~~ 414 (1106)
.|+++++.+
T Consensus 208 ~g~~~~~~~ 216 (240)
T 2onk_A 208 KGKLKELFS 216 (240)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHh
Confidence 999988753
No 57
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=5e-39 Score=354.84 Aligned_cols=221 Identities=26% Similarity=0.291 Sum_probs=179.5
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.|+ ++++|+||||+|++||++||+||||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 20 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 20 MLSIKDLHVSVE-------------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 488999988763 3579999999999999999999999999999999999742235689999999876
Q ss_pred Chh---cc-cceEEEEccCCCCCCCCCHHHHHHHhhh-hc---CCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCC
Q 001291 923 KQE---TF-ARISGYCEQNDIHSPFVTVYESLFYSAW-LR---LPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGV 993 (1106)
Q Consensus 923 ~~~---~~-~~~~g~v~q~~~~~~~~tv~e~l~~~~~-~~---~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~~g~ 993 (1106)
... .. ++.+||++|++.+++.+|+.|++.+... .+ .......+..++.++++++.+++. ...+..+.
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 162 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN---- 162 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----
T ss_pred CcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----
Confidence 421 11 2348999999999999999999977531 11 111122334456788999999996 45665532
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHh-cCeEEEEecC
Q 001291 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRG 1072 (1106)
Q Consensus 994 ~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~-~D~v~~l~~g 1072 (1106)
.+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++|||++. +... ||++++|++
T Consensus 163 ~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~-~~~~~~d~v~~l~~- 240 (267)
T 2zu0_C 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLYQ- 240 (267)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGG-GGTSCCSEEEEEET-
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHH-HHhhcCCEEEEEEC-
Confidence 1499999999999999999999999999999999999999999999987679999999999873 4444 899999985
Q ss_pred CEEEEEecCC
Q 001291 1073 GREVYVGPLG 1082 (1106)
Q Consensus 1073 G~~~~~G~~~ 1082 (1106)
|++++.|+..
T Consensus 241 G~i~~~g~~~ 250 (267)
T 2zu0_C 241 GRIVKSGDFT 250 (267)
T ss_dssp TEEEEEECTT
T ss_pred CEEEEEcCHH
Confidence 7999999864
No 58
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.1e-38 Score=349.14 Aligned_cols=208 Identities=22% Similarity=0.339 Sum_probs=174.4
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++. ++.+|+|+||+|++||++||+||||||||||+++|+|..++ .+|+|.+
T Consensus 5 l~i~~l~~~y~~------------~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~------ 64 (253)
T 2nq2_C 5 LSVENLGFYYQA------------ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP--IQGKIEV------ 64 (253)
T ss_dssp EEEEEEEEEETT------------TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC--SEEEEEE------
T ss_pred EEEeeEEEEeCC------------CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEE------
Confidence 678888877630 24699999999999999999999999999999999998764 4899872
Q ss_pred hhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCC-CCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 924 QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPP-EVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 924 ~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
++.+||++|++.+++.+||+||+.|+....... .......++.++++++.+++.+..++.+ .+|||||||
T Consensus 65 ----~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~q 135 (253)
T 2nq2_C 65 ----YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF-----TSLSGGQRQ 135 (253)
T ss_dssp ----CSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHH
T ss_pred ----eccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-----hhCCHHHHH
Confidence 356899999998888899999999875322110 0112334566889999999998877764 469999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
||+|||||+.+|+||||||||+|||+.++..+++.|+++.++ |+|||++|||++ .+...||++++|++ |+ ++.|+.
T Consensus 136 rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~-~~~g~~ 212 (253)
T 2nq2_C 136 LILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNK-QN-FKFGET 212 (253)
T ss_dssp HHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEET-TE-EEEEEH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-Ce-EecCCH
Confidence 999999999999999999999999999999999999999876 999999999987 46688999999986 67 888876
Q ss_pred CC
Q 001291 1082 GH 1083 (1106)
Q Consensus 1082 ~~ 1083 (1106)
.+
T Consensus 213 ~~ 214 (253)
T 2nq2_C 213 RN 214 (253)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 59
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=3.4e-39 Score=360.81 Aligned_cols=201 Identities=24% Similarity=0.361 Sum_probs=165.6
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
.++|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++||+|++.+| ..
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf-~~ 142 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLF-ND 142 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSSCCCC-SE
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecCCccC-cc
Confidence 46999999999999999999999999999999999999998 9999999999876543 46799999998777 56
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHc-------CCcccccc
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVL-------GLDICADT 314 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-------gL~~~~dt 314 (1106)
||+|||.|+..... .+ .++.+++.. .++...+|
T Consensus 143 Tv~eNi~~~~~~~~----~~------------------------------------~~~~~~~~~~l~~~i~~lp~gl~t 182 (306)
T 3nh6_A 143 TIADNIRYGRVTAG----ND------------------------------------EVEAAAQAAGIHDAIMAFPEGYRT 182 (306)
T ss_dssp EHHHHHHTTSTTCC----HH------------------------------------HHHHHHHHHTCHHHHHHSTTGGGC
T ss_pred cHHHHHHhhcccCC----HH------------------------------------HHHHHHHHhCcHHHHHhccchhhh
Confidence 99999998643210 00 011112222 23345678
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 315 ~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
.+|+ .+..|||||||||+|||||+.+|+||||||||||||+.+...|.+.|+++. .++ ++++++|....+.. ||+
T Consensus 183 ~~~~-~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~--~~~-Tvi~itH~l~~~~~-aD~ 257 (306)
T 3nh6_A 183 QVGE-RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC--ANR-TTIVVAHRLSTVVN-ADQ 257 (306)
T ss_dssp EEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH--TTS-EEEEECCSHHHHHT-CSE
T ss_pred HhcC-CcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCC-EEEEEEcChHHHHc-CCE
Confidence 8875 455699999999999999999999999999999999999999999999864 244 45557888888765 999
Q ss_pred EEEecCCeEEEEcCHHHHHH
Q 001291 395 IILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (1106)
|++|++|+|++.|+++++..
T Consensus 258 i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 258 ILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999875
No 60
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=6.1e-39 Score=349.79 Aligned_cols=195 Identities=23% Similarity=0.358 Sum_probs=169.1
Q ss_pred EeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh---hcccceEEEEccCCCCCCCCCHH
Q 001291 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ---ETFARISGYCEQNDIHSPFVTVY 947 (1106)
Q Consensus 871 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~g~v~q~~~~~~~~tv~ 947 (1106)
+|+|+||+|++||+++|+||||||||||+++|+|..++ . |+|.++|.+... ..+++.+||++|++.+++.+||+
T Consensus 15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p--~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 91 (249)
T 2qi9_C 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 91 (249)
T ss_dssp TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHH
Confidence 79999999999999999999999999999999998763 5 999999987632 23456799999999888889999
Q ss_pred HHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC-------eEEEe
Q 001291 948 ESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPS-------IIFMD 1020 (1106)
Q Consensus 948 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~-------illLD 1020 (1106)
||+.++.... .. ++.++++++.+++.+..++.+ .+||||||||++|||||+.+|+ +||||
T Consensus 92 e~l~~~~~~~----~~----~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLD 158 (249)
T 2qi9_C 92 HYLTLHQHDK----TR----TELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 158 (249)
T ss_dssp HHHHTTCSST----TC----HHHHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHHHHhhccC----Cc----HHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEE
Confidence 9998753111 11 455789999999988877664 4699999999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCCC
Q 001291 1021 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGH 1083 (1106)
Q Consensus 1021 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~ 1083 (1106)
|||+|||+.++..+++.|+++.++|+|||++|||++ .+...||++++|++ |++++.|+..+
T Consensus 159 EPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~~ 219 (249)
T 2qi9_C 159 EPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRREE 219 (249)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEEHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHH
Confidence 999999999999999999999777999999999987 46688999999985 78999887653
No 61
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=5.6e-39 Score=350.36 Aligned_cols=213 Identities=25% Similarity=0.382 Sum_probs=174.6
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
..++++|+++.|+. +++.+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 6 ~~~~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~I~i~g~~ 72 (247)
T 2ff7_A 6 HDITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP--ENGQVLIDGHD 72 (247)
T ss_dssp EEEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred CceeEEEEEEEeCC-----------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEE
Confidence 36889999987731 134699999999999999999999999999999999998764 48999999987
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccccccc-------CCC
Q 001291 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV-------GLP 991 (1106)
Q Consensus 922 ~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-------~~~ 991 (1106)
... ..+++.+||++|++.+++ .||+||+.|+.. ... ++.++++++.+++.+..+... +.+
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~ 142 (247)
T 2ff7_A 73 LALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQ 142 (247)
T ss_dssp TTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTT
T ss_pred hhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCC
Confidence 643 234567999999998776 699999987521 111 234677888888876654432 111
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
+.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++. +|+|||++||+++. + +.||++++|++
T Consensus 143 -~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~ 218 (247)
T 2ff7_A 143 -GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEK 218 (247)
T ss_dssp -TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEET
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEEC
Confidence 35799999999999999999999999999999999999999999999985 69999999999873 4 56999999985
Q ss_pred CCEEEEEecCC
Q 001291 1072 GGREVYVGPLG 1082 (1106)
Q Consensus 1072 gG~~~~~G~~~ 1082 (1106)
|++++.|+..
T Consensus 219 -G~i~~~g~~~ 228 (247)
T 2ff7_A 219 -GKIVEQGKHK 228 (247)
T ss_dssp -TEEEEEECHH
T ss_pred -CEEEEECCHH
Confidence 7899988753
No 62
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=6.7e-39 Score=353.88 Aligned_cols=205 Identities=28% Similarity=0.417 Sum_probs=174.7
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCC-CCCCCCCH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHD-NHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 243 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++||+|++ ..++.+||
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcH
Confidence 46999999999999999999999999999999999999998 999999998875322246799999985 56778999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc--ccccccccCccC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD--ICADTMVGDEMR 321 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~vg~~~~ 321 (1106)
+||+.|+.... . +.. +....++.+++.+||+ +..++.+++
T Consensus 97 ~enl~~~~~~~-~--------------------~~~--------------~~~~~~~~~l~~~gl~~~~~~~~~~~~--- 138 (266)
T 2yz2_A 97 FDEVAFAVKNF-Y--------------------PDR--------------DPVPLVKKAMEFVGLDFDSFKDRVPFF--- 138 (266)
T ss_dssp HHHHHHTTTTT-C--------------------TTS--------------CSHHHHHHHHHHTTCCHHHHTTCCGGG---
T ss_pred HHHHHHHHHhc-C--------------------CHH--------------HHHHHHHHHHHHcCcCCcccccCChhh---
Confidence 99999864211 0 000 0123467789999999 888888765
Q ss_pred CCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCC
Q 001291 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 401 (1106)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. +.+|+.++|+..++..+||+|++|++|
T Consensus 139 --LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tii~vtHd~~~~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 139 --LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL--GKTVILISHDIETVINHVDRVVVLEKG 214 (266)
T ss_dssp --SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCCTTTGGGCSEEEEEETT
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999987543 456666888888898999999999999
Q ss_pred eEEEEcCHHHHHH
Q 001291 402 QIVYQGPRELVLE 414 (1106)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1106)
++++.|+++++..
T Consensus 215 ~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 215 KKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEeCCHHHHhc
Confidence 9999999988764
No 63
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=6.1e-39 Score=354.74 Aligned_cols=215 Identities=22% Similarity=0.287 Sum_probs=172.7
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++||++.|+.. +++.+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 16 ~l~~~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~i 83 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH----------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP--TGGKVLLDGEPL 83 (271)
T ss_dssp CEEEEEEEECCTTC----------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCEEc
Confidence 48899999877420 124589999999999999999999999999999999998764 489999999876
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHH-----HHHHHHHHHHHc--CCCcccccccCCCC
Q 001291 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSET-----RKMFIEEVMELV--ELKPLRQSLVGLPG 992 (1106)
Q Consensus 923 ~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~~--~l~~~~~~~~~~~g 992 (1106)
.. ..+++.+||++|++.+++ .||+||+.|+.... ...+. ....++++++.+ ++....+..+
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~----~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~---- 154 (271)
T 2ixe_A 84 VQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRT----PTMEEITAVAMESGAHDFISGFPQGYDTEVGETG---- 154 (271)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSC----CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGG----
T ss_pred ccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccC----ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCc----
Confidence 43 223557999999998876 59999998863211 11011 112345667777 6666655553
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 993 ~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
.+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.+ .|+|||++|||++. + +.||++++|++
T Consensus 155 -~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~-~-~~~d~v~~l~~ 231 (271)
T 2ixe_A 155 -NQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL-A-ERAHHILFLKE 231 (271)
T ss_dssp -TTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH-H-TTCSEEEEEET
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH-H-HhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999999864 48999999999863 4 56999999985
Q ss_pred CCEEEEEecCC
Q 001291 1072 GGREVYVGPLG 1082 (1106)
Q Consensus 1072 gG~~~~~G~~~ 1082 (1106)
|++++.|+..
T Consensus 232 -G~i~~~g~~~ 241 (271)
T 2ixe_A 232 -GSVCEQGTHL 241 (271)
T ss_dssp -TEEEEEECHH
T ss_pred -CEEEEECCHH
Confidence 7899988754
No 64
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.1e-39 Score=345.09 Aligned_cols=201 Identities=20% Similarity=0.267 Sum_probs=169.5
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
-+.++|+++.++ + ++|+||||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 10 ~l~~~~ls~~y~-------------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~ 73 (214)
T 1sgw_A 10 KLEIRDLSVGYD-------------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVPI 73 (214)
T ss_dssp EEEEEEEEEESS-------------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred eEEEEEEEEEeC-------------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEh
Confidence 478889887763 3 699999999999999999999999999999999998764 589999999876
Q ss_pred ChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 923 KQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 923 ~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
. ..++.+||++|++.+++.+||+||+.++...+.. .. . ++.++++++.+++.+. +..+ .+|||||||
T Consensus 74 ~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~---~~-~-~~~~~~~l~~~gl~~~-~~~~-----~~LSgGqkq 140 (214)
T 1sgw_A 74 T--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV---KV-N-KNEIMDALESVEVLDL-KKKL-----GELSQGTIR 140 (214)
T ss_dssp G--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC---CC-C-HHHHHHHHHHTTCCCT-TSBG-----GGSCHHHHH
T ss_pred h--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC---ch-H-HHHHHHHHHHcCCCcC-CCCh-----hhCCHHHHH
Confidence 4 3456799999999988889999999887544321 11 1 3457899999999877 6553 469999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEE
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGRE 1075 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~ 1075 (1106)
|++|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++|||++ ++...||+++++. |++
T Consensus 141 rv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~~--~~~ 210 (214)
T 1sgw_A 141 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKYS--TKI 210 (214)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGGB--C--
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEeC--Ccc
Confidence 999999999999999999999999999999999999998766899999999998 4667788887663 454
No 65
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.3e-38 Score=353.10 Aligned_cols=209 Identities=27% Similarity=0.325 Sum_probs=171.4
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCC--CCCc---cceEEEEcCCCCCC-
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMD--EFVP---ERTAAYISQHDNHI- 238 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~--~~~~---~~~~~yv~Q~d~~~- 238 (1106)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++. .... ++.++||+|++.++
T Consensus 34 ~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (279)
T 2ihy_A 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKF 110 (279)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTS
T ss_pred EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCHHHHcCcEEEEEcCccccc
Confidence 36999999999999999999999999999999999999998 999999998875 3221 35799999986432
Q ss_pred -CCCCHHHHHHHHHHhc-CCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccc
Q 001291 239 -GEMTVRETLAFAARCQ-GVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMV 316 (1106)
Q Consensus 239 -~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1106)
+.+||+||+.|+.... +. +.. + ..+....++.+++.+||++..++.+
T Consensus 111 ~~~ltv~enl~~~~~~~~~~---~~~--------------~--------------~~~~~~~~~~~l~~~gl~~~~~~~~ 159 (279)
T 2ihy_A 111 QEGERVIDVVISGAFKSIGV---YQD--------------I--------------DDEIRNEAHQLLKLVGMSAKAQQYI 159 (279)
T ss_dssp CTTSBHHHHHHTTC--------------------------C--------------CHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCCHHHHHHhhhhhcccc---ccC--------------C--------------cHHHHHHHHHHHHHcCChhHhcCCh
Confidence 3569999999863210 00 000 0 0011234677899999999998888
Q ss_pred cCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEE-EEEecChhHHHhhcCeE
Q 001291 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAV-ISLLQPAPETYNLFDDI 395 (1106)
Q Consensus 317 g~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~i-i~i~q~~~~~~~~~D~v 395 (1106)
++ |||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++... +.|+. +.++|+..++..+||+|
T Consensus 160 ~~-----LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v 233 (279)
T 2ihy_A 160 GY-----LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKI 233 (279)
T ss_dssp GG-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEE
T ss_pred hh-----CCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEE
Confidence 76 9999999999999999999999999999999999999999999988653 55551 66789999999999999
Q ss_pred EEecCCeEEEEcCHHHHH
Q 001291 396 ILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1106)
++|++|++++.|+++++.
T Consensus 234 ~~l~~G~i~~~g~~~~~~ 251 (279)
T 2ihy_A 234 LLLKDGQSIQQGAVEDIL 251 (279)
T ss_dssp EEEETTEEEEEEEHHHHC
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999988763
No 66
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=5.6e-38 Score=343.49 Aligned_cols=206 Identities=24% Similarity=0.306 Sum_probs=165.9
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCC--CCCCCCceeEEEECCccCCCCCc----cceEEEEcCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGK--LDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHI 238 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~--~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 238 (1106)
+++|+|||+++++|++++|+||||||||||+++|+|. ++|+ +|+|.++|.++..... ++.++||+|++.++
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 92 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSPDERARKGLFLAFQYPVEV 92 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-C
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCHHHHHhCcEEEeccCCccc
Confidence 4699999999999999999999999999999999998 6776 9999999998865432 23489999999999
Q ss_pred CCCCHHHHHHHHHHh-cCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCC-cccccccc
Q 001291 239 GEMTVRETLAFAARC-QGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGL-DICADTMV 316 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL-~~~~dt~v 316 (1106)
+.+||+||+.|+... .+... ...+....++.+++.+|| .+..++.+
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~l~~~gl~~~~~~~~~ 140 (250)
T 2d2e_A 93 PGVTIANFLRLALQAKLGREV--------------------------------GVAEFWTKVKKALELLDWDESYLSRYL 140 (250)
T ss_dssp CSCBHHHHHHHHHHHHHTSCC--------------------------------CHHHHHHHHHHHHHHHTCCGGGGGSBT
T ss_pred cCCCHHHHHHHHHHhhccccC--------------------------------CHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 999999999986531 11000 000112346778999999 57788776
Q ss_pred cCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhh-cCeE
Q 001291 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNL-FDDI 395 (1106)
Q Consensus 317 g~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~-~D~v 395 (1106)
++ +|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+ .+++|+.++|+..++..+ ||+|
T Consensus 141 ~~----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~--~g~tvi~vtHd~~~~~~~~~d~v 214 (250)
T 2d2e_A 141 NE----GFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG--PNFGALVITHYQRILNYIQPDKV 214 (250)
T ss_dssp TC----C----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS--TTCEEEEECSSSGGGGTSCCSEE
T ss_pred cc----CCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhcCCEE
Confidence 53 3999999999999999999999999999999999999999999998743 355666678888888888 5999
Q ss_pred EEecCCeEEEEcCHHH
Q 001291 396 ILLSDGQIVYQGPREL 411 (1106)
Q Consensus 396 ilL~~G~iv~~G~~~~ 411 (1106)
++|++|++++.|+++.
T Consensus 215 ~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 215 HVMMDGRVVATGGPEL 230 (250)
T ss_dssp EEEETTEEEEEESHHH
T ss_pred EEEECCEEEEEeCHHH
Confidence 9999999999999873
No 67
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=7.4e-38 Score=341.52 Aligned_cols=200 Identities=25% Similarity=0.393 Sum_probs=161.6
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++ +
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 97 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-R 97 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-S
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-c
Confidence 46999999999999999999999999999999999999998 9999999998865432 357999999987775 6
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccccc-------c
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICAD-------T 314 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d-------t 314 (1106)
||+||+.|+.. .. . ...++.+++.+||.+..+ +
T Consensus 98 tv~enl~~~~~--~~--~------------------------------------~~~~~~~l~~~~l~~~~~~~~~gl~~ 137 (247)
T 2ff7_A 98 SIIDNISLANP--GM--S------------------------------------VEKVIYAAKLAGAHDFISELREGYNT 137 (247)
T ss_dssp BHHHHHTTTCT--TC--C------------------------------------HHHHHHHHHHHTCHHHHHTSTTGGGC
T ss_pred cHHHHHhccCC--CC--C------------------------------------HHHHHHHHHHhChHHHHHhCcchhhh
Confidence 99999987521 00 0 011233455555554333 2
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 315 ~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
.++. ....|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. .+ .+|++++|+...+ ..||+
T Consensus 138 ~~~~-~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~g-~tviivtH~~~~~-~~~d~ 212 (247)
T 2ff7_A 138 IVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KG-RTVIIIAHRLSTV-KNADR 212 (247)
T ss_dssp BCST-TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TT-SEEEEECSSGGGG-TTSSE
T ss_pred hhhC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CC-CEEEEEeCCHHHH-HhCCE
Confidence 3332 245699999999999999999999999999999999999999999999873 34 4555677877766 45999
Q ss_pred EEEecCCeEEEEcCHHHHH
Q 001291 395 IILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1106)
|++|++|++++.|+++++.
T Consensus 213 v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 213 IIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998874
No 68
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=2.4e-37 Score=338.51 Aligned_cols=198 Identities=16% Similarity=0.228 Sum_probs=167.7
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.+ ++.++||+|++.+++.+||+
T Consensus 18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~----------~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV----------YQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE----------CSCEEEECSCCCCSSCCBHH
T ss_pred CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE----------eccEEEEcCCCccCCCCCHH
Confidence 46999999999999999999999999999999999999998 999982 35799999999888899999
Q ss_pred HHHHHHHHhc-CCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 245 ETLAFAARCQ-GVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 245 E~l~f~~~~~-~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
||+.|+.... +. .... ..+....++.+++.+||++..+..+++
T Consensus 85 enl~~~~~~~~~~-------------------~~~~------------~~~~~~~~~~~l~~~~l~~~~~~~~~~----- 128 (253)
T 2nq2_C 85 DIVLMGRSTHINT-------------------FAKP------------KSHDYQVAMQALDYLNLTHLAKREFTS----- 128 (253)
T ss_dssp HHHHGGGGGGSCT-------------------TCCC------------CHHHHHHHHHHHHHTTCGGGTTSBGGG-----
T ss_pred HHHHHhhhhhccc-------------------ccCC------------CHHHHHHHHHHHHHcCChHHhcCChhh-----
Confidence 9999864321 10 0000 001123467789999999988888765
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+.. +++|+.++|+..++..+||+|++|++|+
T Consensus 129 LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~- 206 (253)
T 2nq2_C 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ-NMTVVFTTHQPNQVVAIANKTLLLNKQN- 206 (253)
T ss_dssp SCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTS-CCEEEEEESCHHHHHHHCSEEEEEETTE-
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEeCCe-
Confidence 99999999999999999999999999999999999999999999875432 4556668899999999999999999999
Q ss_pred EEEcCHHHHH
Q 001291 404 VYQGPRELVL 413 (1106)
Q Consensus 404 v~~G~~~~~~ 413 (1106)
++.|+++++.
T Consensus 207 ~~~g~~~~~~ 216 (253)
T 2nq2_C 207 FKFGETRNIL 216 (253)
T ss_dssp EEEEEHHHHC
T ss_pred EecCCHHHHh
Confidence 9999988763
No 69
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.3e-38 Score=347.26 Aligned_cols=211 Identities=26% Similarity=0.412 Sum_probs=172.3
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.|+ +++++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPID 67 (243)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEEST
T ss_pred EEEEEEEEEeC------------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEhh
Confidence 56788887762 123589999999999999999999999999999999998764 4899999998764
Q ss_pred h---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccccccc-------CCCCC
Q 001291 924 Q---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV-------GLPGV 993 (1106)
Q Consensus 924 ~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-------~~~g~ 993 (1106)
. ..+++.+||++|++.+++ .||+||+.|+.. .... ++.++++++.+++.+..+... +. .+
T Consensus 68 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~----~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~ 137 (243)
T 1mv5_A 68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE----GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGE-RG 137 (243)
T ss_dssp TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT----SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEEST-TS
T ss_pred hCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc----CCCC----HHHHHHHHHHhChHHHHHhCccchhchhcc-Cc
Confidence 3 234567999999998776 599999987521 1111 234678899999987665432 11 13
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCC
Q 001291 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1106)
Q Consensus 994 ~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG 1073 (1106)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++. +|+|||++|||++. + +.||++++|++ |
T Consensus 138 ~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~-~-~~~d~v~~l~~-G 213 (243)
T 1mv5_A 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLST-I-VDADKIYFIEK-G 213 (243)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHH-H-HHCSEEEEEET-T
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHH-H-HhCCEEEEEEC-C
Confidence 5799999999999999999999999999999999999999999999987 69999999999863 4 56999999985 7
Q ss_pred EEEEEecCC
Q 001291 1074 REVYVGPLG 1082 (1106)
Q Consensus 1074 ~~~~~G~~~ 1082 (1106)
++++.|+..
T Consensus 214 ~i~~~g~~~ 222 (243)
T 1mv5_A 214 QITGSGKHN 222 (243)
T ss_dssp EECCCSCHH
T ss_pred EEEEeCCHH
Confidence 898877654
No 70
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=3e-37 Score=340.68 Aligned_cols=221 Identities=24% Similarity=0.270 Sum_probs=174.7
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCC--CCCCCceeEEEECCccCCCCCc----cceEEEEcCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKL--DPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHI 238 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 238 (1106)
+++|+|||++|++|++++|+|||||||||||++|+|.+ +|+ +|+|.++|.++..... ++.++||+|++.++
T Consensus 33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~ 109 (267)
T 2zu0_C 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEI 109 (267)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCC
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCcCCHHHHhhCCEEEEccCcccc
Confidence 46999999999999999999999999999999999984 566 9999999998754332 23499999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc-cccccccc
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADTMVG 317 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg 317 (1106)
+.+||+|++.+...... . ..+. +.. ...+....++.+++.+||+ ...++.++
T Consensus 110 ~~~tv~e~~~~~~~~~~-------------~--~~~~-~~~-----------~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 162 (267)
T 2zu0_C 110 PGVSNQFFLQTALNAVR-------------S--YRGQ-ETL-----------DRFDFQDLMEEKIALLKMPEDLLTRSVN 162 (267)
T ss_dssp TTCBHHHHHHHHHHHHH-------------H--GGGC-CCC-----------CHHHHHHHHHHHHHHTTCCTTTTTSBTT
T ss_pred ccccHHHHHHHHHHhhh-------------h--hhcc-ccC-----------CHHHHHHHHHHHHHHcCCChhHhcCCcc
Confidence 99999999987542100 0 0000 000 0011123567889999996 56777664
Q ss_pred CccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhh-cCeEE
Q 001291 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNL-FDDII 396 (1106)
Q Consensus 318 ~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~-~D~vi 396 (1106)
. .|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.. . +++|++++|+..++..+ ||+|+
T Consensus 163 ~----~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tviivtHd~~~~~~~~~d~v~ 236 (267)
T 2zu0_C 163 V----GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-G-KRSFIIVTHYQRILDYIKPDYVH 236 (267)
T ss_dssp T----TCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-S-SCEEEEECSSGGGGGTSCCSEEE
T ss_pred c----CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c-CCEEEEEeeCHHHHHhhcCCEEE
Confidence 2 3999999999999999999999999999999999999999999998643 3 45666788888888776 89999
Q ss_pred EecCCeEEEEcCHHHHHHHHHhcCCC
Q 001291 397 LLSDGQIVYQGPRELVLEFFESMGFK 422 (1106)
Q Consensus 397 lL~~G~iv~~G~~~~~~~~f~~~G~~ 422 (1106)
+|++|++++.|+++++.. ++..||.
T Consensus 237 ~l~~G~i~~~g~~~~~~~-~~~~~~~ 261 (267)
T 2zu0_C 237 VLYQGRIVKSGDFTLVKQ-LEEQGYG 261 (267)
T ss_dssp EEETTEEEEEECTTHHHH-HHTTTCT
T ss_pred EEECCEEEEEcCHHHHhh-hhhcchh
Confidence 999999999999988753 4455543
No 71
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1e-37 Score=340.13 Aligned_cols=198 Identities=24% Similarity=0.332 Sum_probs=171.0
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1106)
++|+|+|+++++|++++|+|||||||||||++|+|.++| . |+|.++|.++..... ++.++||+|++.+++.+|
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCB
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCc
Confidence 489999999999999999999999999999999999987 3 999999988754322 356999999998889999
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCC
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1106)
|+||+.|+.. ... . ...++.+++.+||++..+..+++
T Consensus 90 v~e~l~~~~~-~~~----------~----------------------------~~~~~~~l~~~~l~~~~~~~~~~---- 126 (249)
T 2qi9_C 90 VWHYLTLHQH-DKT----------R----------------------------TELLNDVAGALALDDKLGRSTNQ---- 126 (249)
T ss_dssp HHHHHHTTCS-STT----------C----------------------------HHHHHHHHHHTTCGGGTTSBGGG----
T ss_pred HHHHHHHhhc-cCC----------c----------------------------HHHHHHHHHHcCChhHhcCChhh----
Confidence 9999987521 000 0 12356789999999988887765
Q ss_pred CCChhhhhHHHHHHHHhcCCc-------cceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001291 323 GVSGGQKKRVTTGEMMVGPAL-------ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~-------vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 395 (1106)
|||||||||+||+||+.+|+ +|||||||+|||+.++..+.+.|+++.+ . +++|++++|+..++..++|++
T Consensus 127 -LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tviivtHd~~~~~~~~d~v 203 (249)
T 2qi9_C 127 -LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ-Q-GLAIVMSSHDLNHTLRHAHRA 203 (249)
T ss_dssp -CCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEECSCHHHHHHHCSEE
T ss_pred -CCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEE
Confidence 99999999999999999999 9999999999999999999999998754 3 456667889999999999999
Q ss_pred EEecCCeEEEEcCHHHHH
Q 001291 396 ILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1106)
++|++|++++.|+++++.
T Consensus 204 ~~l~~G~i~~~g~~~~~~ 221 (249)
T 2qi9_C 204 WLLKGGKMLASGRREEVL 221 (249)
T ss_dssp EEEETTEEEEEEEHHHHS
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988763
No 72
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=8.5e-38 Score=345.56 Aligned_cols=209 Identities=21% Similarity=0.363 Sum_probs=167.6
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
+++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-R 107 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHHHhccEEEEecCCcccc-c
Confidence 46999999999999999999999999999999999999998 9999999998754322 357999999987776 6
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHc--CCcccccccccCc
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVL--GLDICADTMVGDE 319 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~ 319 (1106)
||+|||.|+.... ... + ++... .....++.+++.+ ||+...+..+++
T Consensus 108 tv~enl~~~~~~~--~~~-~---~~~~~------------------------~~~~~~~~~l~~l~~gl~~~~~~~~~~- 156 (271)
T 2ixe_A 108 SFRENIAYGLTRT--PTM-E---EITAV------------------------AMESGAHDFISGFPQGYDTEVGETGNQ- 156 (271)
T ss_dssp BHHHHHHTTCSSC--CCH-H---HHHHH------------------------HHHHTCHHHHHHSTTGGGSBCCGGGTT-
T ss_pred cHHHHHhhhcccC--ChH-H---HHHHH------------------------HHHHhHHHHHHhhhcchhhhhcCCcCC-
Confidence 9999999863211 000 0 00000 0011234567777 777766666554
Q ss_pred cCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEec
Q 001291 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1106)
Q Consensus 320 ~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 399 (1106)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.... +++|++++|+...+. .||+|++|+
T Consensus 157 ----LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-g~tviivtHd~~~~~-~~d~v~~l~ 230 (271)
T 2ixe_A 157 ----LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWA-SRTVLLITQQLSLAE-RAHHILFLK 230 (271)
T ss_dssp ----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTT-TSEEEEECSCHHHHT-TCSEEEEEE
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhc-CCEEEEEeCCHHHHH-hCCEEEEEE
Confidence 99999999999999999999999999999999999999999999864322 455666788887765 599999999
Q ss_pred CCeEEEEcCHHHHHH
Q 001291 400 DGQIVYQGPRELVLE 414 (1106)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1106)
+|++++.|+++++..
T Consensus 231 ~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 231 EGSVCEQGTHLQLME 245 (271)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999998754
No 73
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.1e-37 Score=342.71 Aligned_cols=212 Identities=25% Similarity=0.376 Sum_probs=170.8
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.|+.. ..+++|+||||+|++|+++||+||||||||||+++|+|..+ + +|+|.++|.+.
T Consensus 17 ~l~i~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i 83 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQ----------TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNV 83 (260)
T ss_dssp CEEEEEEEECCTTC----------CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEh
Confidence 47889999877421 11358999999999999999999999999999999999875 3 79999999876
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccccc-------ccCCCC
Q 001291 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS-------LVGLPG 992 (1106)
Q Consensus 923 ~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~-------~~~~~g 992 (1106)
.. ..+++.+||++|++.+++ .||+||+.|+.. ... ++.+.++++.+++.+..+. ..+.+
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~- 152 (260)
T 2ghi_A 84 NKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNK- 152 (260)
T ss_dssp GGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSS-
T ss_pred hhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCC----HHHHHHHHHHhCCHHHHHhccccccccccCC-
Confidence 43 234567999999998875 699999987521 111 2345677777777554321 12221
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecC
Q 001291 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 993 ~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~g 1072 (1106)
+.+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.+ |+|||++|||++. + +.||++++|++
T Consensus 153 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~- 228 (260)
T 2ghi_A 153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNK- 228 (260)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEET-
T ss_pred cCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEEC-
Confidence 347999999999999999999999999999999999999999999999864 8999999999974 4 56999999985
Q ss_pred CEEEEEecCC
Q 001291 1073 GREVYVGPLG 1082 (1106)
Q Consensus 1073 G~~~~~G~~~ 1082 (1106)
|++++.|+..
T Consensus 229 G~i~~~g~~~ 238 (260)
T 2ghi_A 229 GKIVEKGTHK 238 (260)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEECCHH
Confidence 7999988754
No 74
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.1e-37 Score=340.16 Aligned_cols=207 Identities=17% Similarity=0.205 Sum_probs=171.4
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++.. ...+.+|+|+||+|+ |++++|+||||||||||+++|+|.. + .+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~~~---------~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~~g~~~~ 68 (263)
T 2pjz_A 2 IQLKNVGITLSGK---------GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P--YSGNIFINGMEVR 68 (263)
T ss_dssp EEEEEEEEEEEEE---------TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEETTEEGG
T ss_pred EEEEEEEEEeCCC---------CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEECCEECc
Confidence 5678888776420 011469999999999 9999999999999999999999987 5 4899999998754
Q ss_pred hhcccceEE-EEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHH
Q 001291 924 QETFARISG-YCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVNGLSTEQR 1001 (1106)
Q Consensus 924 ~~~~~~~~g-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~~g~~~LS~Gqr 1001 (1106)
....++.+| |++|++.+ .+||+||+.+...++ .. .++.++++++.+++. +..+..+ .+||||||
T Consensus 69 ~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqk 134 (263)
T 2pjz_A 69 KIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRKL-----YKLSAGQS 134 (263)
T ss_dssp GCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHH
T ss_pred chHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCCh-----hhCCHHHH
Confidence 211145689 99999877 789999998865432 11 134578999999998 8777664 46999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcC-eEEEEecCCEEEEEec
Q 001291 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD-ELFLMKRGGREVYVGP 1080 (1106)
Q Consensus 1002 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D-~v~~l~~gG~~~~~G~ 1080 (1106)
||++|||||+.+|++|||||||+|||+.++..+++.|+++.+ |||++|||++ .+...|| ++++|++ |++++.|+
T Consensus 135 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~-G~i~~~g~ 209 (263)
T 2pjz_A 135 VLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVG-NRLQGPIS 209 (263)
T ss_dssp HHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEEC-CEEEEecC
Confidence 999999999999999999999999999999999999998753 9999999987 3667899 9999985 78999887
Q ss_pred CC
Q 001291 1081 LG 1082 (1106)
Q Consensus 1081 ~~ 1082 (1106)
..
T Consensus 210 ~~ 211 (263)
T 2pjz_A 210 VS 211 (263)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 75
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.1e-37 Score=337.83 Aligned_cols=194 Identities=21% Similarity=0.198 Sum_probs=167.9
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEE-EEcCCCCCCCCCCH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAA-YISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~-yv~Q~d~~~~~lTV 243 (1106)
+++|+|+|++++ |++++|+|||||||||||++|+|.+ |+ +|+|.++|.++.....++.++ ||+|++.+ .+||
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv 90 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTV 90 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcH
Confidence 469999999999 9999999999999999999999999 98 999999998764321246799 99998766 8999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc-ccccccccCccCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADTMVGDEMRR 322 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~r 322 (1106)
+||+.|+...... ....++.+++.+||+ +..++.+++
T Consensus 91 ~enl~~~~~~~~~--------------------------------------~~~~~~~~l~~~gl~~~~~~~~~~~---- 128 (263)
T 2pjz_A 91 NDIVYLYEELKGL--------------------------------------DRDLFLEMLKALKLGEEILRRKLYK---- 128 (263)
T ss_dssp HHHHHHHHHHTCC--------------------------------------CHHHHHHHHHHTTCCGGGGGSBGGG----
T ss_pred HHHHHHhhhhcch--------------------------------------HHHHHHHHHHHcCCChhHhcCChhh----
Confidence 9999986532100 012356789999998 888887765
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcC-eEEEecCC
Q 001291 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFD-DIILLSDG 401 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D-~vilL~~G 401 (1106)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++. . +|+.++|+..++..+|| ++++|++|
T Consensus 129 -LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~---~--tviivtHd~~~~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 129 -LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG---K--EGILVTHELDMLNLYKEYKAYFLVGN 202 (263)
T ss_dssp -SCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC---S--EEEEEESCGGGGGGCTTSEEEEEETT
T ss_pred -CCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc---C--cEEEEEcCHHHHHHhcCceEEEEECC
Confidence 99999999999999999999999999999999999999999998752 2 66668899899999999 99999999
Q ss_pred eEEEEcCHHHHH
Q 001291 402 QIVYQGPRELVL 413 (1106)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1106)
++++.|+++++.
T Consensus 203 ~i~~~g~~~~l~ 214 (263)
T 2pjz_A 203 RLQGPISVSELL 214 (263)
T ss_dssp EEEEEEEHHHHH
T ss_pred EEEEecCHHHHH
Confidence 999999998875
No 76
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-37 Score=339.59 Aligned_cols=202 Identities=22% Similarity=0.354 Sum_probs=165.6
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC---ccceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV---PERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 241 (1106)
.++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++ .
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~ 90 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-G 90 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-E
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-c
Confidence 46999999999999999999999999999999999999998 999999999876432 2467999999987776 5
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccccccc------
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTM------ 315 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~------ 315 (1106)
||+||+.|+... .. ....++.+++.+|+.+..+..
T Consensus 91 tv~enl~~~~~~-~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~gl~~ 131 (243)
T 1mv5_A 91 TIRENLTYGLEG-DY--------------------------------------TDEDLWQVLDLAFARSFVENMPDQLNT 131 (243)
T ss_dssp EHHHHTTSCTTS-CS--------------------------------------CHHHHHHHHHHHTCTTTTTSSTTGGGC
T ss_pred cHHHHHhhhccC-CC--------------------------------------CHHHHHHHHHHhChHHHHHhCccchhc
Confidence 999999875210 00 001245567778887665543
Q ss_pred -ccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 316 -VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 316 -vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
++ .....|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. . +.+|++++|+...+ ..||+
T Consensus 132 ~~~-~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~-~~tvi~vtH~~~~~-~~~d~ 206 (243)
T 1mv5_A 132 EVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--K-GRTTLVIAHRLSTI-VDADK 206 (243)
T ss_dssp EES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--T-TSEEEEECCSHHHH-HHCSE
T ss_pred hhc-cCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc--C-CCEEEEEeCChHHH-HhCCE
Confidence 22 2345699999999999999999999999999999999999999999999874 3 44556677877766 46999
Q ss_pred EEEecCCeEEEEcCHHHHHH
Q 001291 395 IILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (1106)
|++|++|++++.|+++++..
T Consensus 207 v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 207 IYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp EEEEETTEECCCSCHHHHHH
T ss_pred EEEEECCEEEEeCCHHHHHh
Confidence 99999999999999988753
No 77
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1e-36 Score=335.08 Aligned_cols=200 Identities=22% Similarity=0.316 Sum_probs=160.2
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
+++|+|||++|++|++++|+|||||||||||++|+|.+++ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-E 107 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-E
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-c
Confidence 4699999999999999999999999999999999999864 7999999998754322 357999999987775 6
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcC-------Ccccccc
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLG-------LDICADT 314 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~dt 314 (1106)
||+||+.|+.. . . .. ..+..+++.++ +++..||
T Consensus 108 tv~enl~~~~~-~-~-~~-------------------------------------~~~~~~l~~~~l~~~~~~l~~~~~~ 147 (260)
T 2ghi_A 108 TIKYNILYGKL-D-A-TD-------------------------------------EEVIKATKSAQLYDFIEALPKKWDT 147 (260)
T ss_dssp EHHHHHHTTCT-T-C-CH-------------------------------------HHHHHHHHHTTCHHHHHTSTTGGGC
T ss_pred CHHHHHhccCC-C-C-CH-------------------------------------HHHHHHHHHhCCHHHHHhccccccc
Confidence 99999988521 0 0 00 01122333333 4445566
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 315 ~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
.++. ....|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++. .+ ++|++++|+...+ ..||+
T Consensus 148 ~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~--~~-~tviivtH~~~~~-~~~d~ 222 (260)
T 2ghi_A 148 IVGN-KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR--KN-RTLIIIAHRLSTI-SSAES 222 (260)
T ss_dssp EESS-SSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT--TT-SEEEEECSSGGGS-TTCSE
T ss_pred cccC-CcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CC-CEEEEEcCCHHHH-HhCCE
Confidence 6553 345699999999999999999999999999999999999999999999874 24 4556677877766 46999
Q ss_pred EEEecCCeEEEEcCHHHHHH
Q 001291 395 IILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (1106)
|++|++|+++..|+++++..
T Consensus 223 i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 223 IILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998754
No 78
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=4.9e-36 Score=367.60 Aligned_cols=214 Identities=23% Similarity=0.304 Sum_probs=177.3
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
..+.++||+++|+. +++++|+|+||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~ 406 (582)
T 3b5x_A 340 GEVDVKDVTFTYQG-----------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV--DSGSICLDGHD 406 (582)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCEE
Confidence 36899999998852 124699999999999999999999999999999999998764 48999999988
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccc-------cCCC
Q 001291 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL-------VGLP 991 (1106)
Q Consensus 922 ~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~-------~~~~ 991 (1106)
... ..+++.+|||+|++.+++ .|++||+.++.. + +. .++.++++++.+++.+..+.. ++..
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~---~-~~----~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~ 477 (582)
T 3b5x_A 407 VRDYKLTNLRRHFALVSQNVHLFN-DTIANNIAYAAE---G-EY----TREQIEQAARQAHAMEFIENMPQGLDTVIGEN 477 (582)
T ss_pred hhhCCHHHHhcCeEEEcCCCcccc-ccHHHHHhccCC---C-CC----CHHHHHHHHHHCCCHHHHHhCcccccchhcCC
Confidence 643 345678999999998876 599999988631 1 11 134578889999887655443 2332
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
..+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++.+ |+|+|++||+++. .+.||++++|++
T Consensus 478 -~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~i~~l~~ 553 (582)
T 3b5x_A 478 -GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLST--IEQADEILVVDE 553 (582)
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH--HHhCCEEEEEEC
Confidence 346999999999999999999999999999999999999999999999864 9999999999863 467999999985
Q ss_pred CCEEEEEecCC
Q 001291 1072 GGREVYVGPLG 1082 (1106)
Q Consensus 1072 gG~~~~~G~~~ 1082 (1106)
|++++.|+..
T Consensus 554 -G~i~~~g~~~ 563 (582)
T 3b5x_A 554 -GEIIERGRHA 563 (582)
T ss_pred -CEEEEECCHH
Confidence 7999998754
No 79
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.3e-36 Score=328.18 Aligned_cols=201 Identities=20% Similarity=0.325 Sum_probs=159.7
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++. +++++|+||||+|++|+++||+||||||||||+++|+|..++ .+|+|.++|
T Consensus 6 ~l~~~~l~~~y~~-----------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g--- 69 (229)
T 2pze_A 6 EVVMENVTAFWEE-----------GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP--SEGKIKHSG--- 69 (229)
T ss_dssp EEEEEEEEECSST-----------TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEECS---
T ss_pred eEEEEEEEEEeCC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CccEEEECC---
Confidence 4788899887641 234689999999999999999999999999999999998764 589999988
Q ss_pred ChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccccc-------ccCCCCCCC
Q 001291 923 KQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS-------LVGLPGVNG 995 (1106)
Q Consensus 923 ~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~-------~~~~~g~~~ 995 (1106)
.+||++|++.+++. ||+||+.|+.. ... ....++++.+++.+..+. ..+.+ +.+
T Consensus 70 -------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~ 130 (229)
T 2pze_A 70 -------RISFCSQFSWIMPG-TIKENIIFGVS------YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEG-GIT 130 (229)
T ss_dssp -------CEEEECSSCCCCSB-CHHHHHHTTSC------CCH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCTT-CTT
T ss_pred -------EEEEEecCCcccCC-CHHHHhhccCC------cCh----HHHHHHHHHhCcHHHHHhCcccccccccCC-CCc
Confidence 28999999988775 99999987531 111 123345555555433222 12212 357
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCE
Q 001291 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1106)
Q Consensus 996 LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~-l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~ 1074 (1106)
||||||||++|||||+.+|++|||||||+|||+.++..+++. ++++. +|+|||++|||++. + +.||++++|++ |+
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~-~-~~~d~v~~l~~-G~ 206 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHE-GS 206 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHH-H-HHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHH-H-HhCCEEEEEEC-CE
Confidence 999999999999999999999999999999999999999997 45554 48999999999863 4 56999999985 78
Q ss_pred EEEEecCC
Q 001291 1075 EVYVGPLG 1082 (1106)
Q Consensus 1075 ~~~~G~~~ 1082 (1106)
+++.|+..
T Consensus 207 i~~~g~~~ 214 (229)
T 2pze_A 207 SYFYGTFS 214 (229)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99988753
No 80
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.5e-37 Score=355.11 Aligned_cols=212 Identities=20% Similarity=0.286 Sum_probs=176.2
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++||+++|+. ++..+|+||||+|++||+++|+||||||||||+++|+|..+ .+|+|.++|.+.
T Consensus 19 ~i~~~~l~~~y~~-----------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~i 84 (390)
T 3gd7_A 19 QMTVKDLTAKYTE-----------GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSW 84 (390)
T ss_dssp CEEEEEEEEESSS-----------SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCBT
T ss_pred eEEEEEEEEEecC-----------CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEEC
Confidence 5899999988742 23468999999999999999999999999999999999864 479999999886
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCC------CCC
Q 001291 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGL------PGV 993 (1106)
Q Consensus 923 ~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~------~g~ 993 (1106)
.. ..+++.+|||+|++.+++ +||+||+.+.. .. .++.++++++.++|.++.++.... .+.
T Consensus 85 ~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~----~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g 153 (390)
T 3gd7_A 85 DSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AH----SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGG 153 (390)
T ss_dssp TSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CS----CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTT
T ss_pred CcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------cc----CHHHHHHHHHHhCCHHHHhhccccccccccccc
Confidence 53 234577999999999887 69999996421 11 134578899999998877765431 112
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCC
Q 001291 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1106)
Q Consensus 994 ~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG 1073 (1106)
.+|||||||||+|||||+.+|+|||||||||+||+..+..+++.|+++. .|+|+|++|||++ ....||++++|++ |
T Consensus 154 ~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~-G 229 (390)
T 3gd7_A 154 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEE-N 229 (390)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEET-T
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEEC-C
Confidence 3499999999999999999999999999999999999999999999864 5899999999986 3467999999985 7
Q ss_pred EEEEEecCCC
Q 001291 1074 REVYVGPLGH 1083 (1106)
Q Consensus 1074 ~~~~~G~~~~ 1083 (1106)
+++..|++.+
T Consensus 230 ~i~~~g~~~e 239 (390)
T 3gd7_A 230 KVRQYDSILE 239 (390)
T ss_dssp EEEEESSHHH
T ss_pred EEEEECCHHH
Confidence 9999998653
No 81
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.5e-37 Score=355.07 Aligned_cols=200 Identities=23% Similarity=0.242 Sum_probs=165.8
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
..+|+|||++|++||+++|+|||||||||||++|+|+++ + +|+|.++|.++....+ ++.++||+|++.+|+ +
T Consensus 34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~ 108 (390)
T 3gd7_A 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-G 108 (390)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-E
T ss_pred eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-c
Confidence 469999999999999999999999999999999999986 5 8999999999876544 368999999998886 7
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccC---
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD--- 318 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~--- 318 (1106)
||+||+.+... . ....++.+++.+||.+..+..+..
T Consensus 109 tv~enl~~~~~-----~------------------------------------~~~~v~~~l~~~~L~~~~~~~p~~l~~ 147 (390)
T 3gd7_A 109 TFRKNLDPNAA-----H------------------------------------SDQEIWKVADEVGLRSVIEQFPGKLDF 147 (390)
T ss_dssp EHHHHHCTTCC-----S------------------------------------CHHHHHHHHHHTTCHHHHTTSTTGGGC
T ss_pred CHHHHhhhccc-----c------------------------------------CHHHHHHHHHHhCCHHHHhhccccccc
Confidence 99999964210 0 011345678888888776665542
Q ss_pred ---ccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001291 319 ---EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1106)
Q Consensus 319 ---~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 395 (1106)
+....|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++. . ++++++++|+. +....||+|
T Consensus 148 ~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~-~~tvi~vtHd~-e~~~~aDri 223 (390)
T 3gd7_A 148 VLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--A-DCTVILCEARI-EAMLECDQF 223 (390)
T ss_dssp EECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--T-TSCEEEECSSS-GGGTTCSEE
T ss_pred ccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--C-CCEEEEEEcCH-HHHHhCCEE
Confidence 2234499999999999999999999999999999999999999999998742 2 45566677775 566779999
Q ss_pred EEecCCeEEEEcCHHHHHH
Q 001291 396 ILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1106)
++|++|++++.|+++++..
T Consensus 224 ~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 224 LVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EEEETTEEEEESSHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999999854
No 82
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=2.3e-36 Score=327.86 Aligned_cols=200 Identities=22% Similarity=0.364 Sum_probs=157.1
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.|+. +++++|+||||+|++|+++||+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 4 l~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---- 66 (237)
T 2cbz_A 4 ITVRNATFTWAR-----------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---- 66 (237)
T ss_dssp EEEEEEEEESCT-----------TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----
T ss_pred EEEEEEEEEeCC-----------CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----
Confidence 678898887641 12468999999999999999999999999999999999876 4689999998
Q ss_pred hhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCCCCCCC
Q 001291 924 QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR-------QSLVGLPGVNGL 996 (1106)
Q Consensus 924 ~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~-------~~~~~~~g~~~L 996 (1106)
.+||++|++.+ +..||+||+.|+... ..+ . .+++++.+++.+.. +...+.+ +.+|
T Consensus 67 ------~i~~v~Q~~~~-~~~tv~enl~~~~~~------~~~-~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~L 128 (237)
T 2cbz_A 67 ------SVAYVPQQAWI-QNDSLRENILFGCQL------EEP-Y---YRSVIQACALLPDLEILPSGDRTEIGEK-GVNL 128 (237)
T ss_dssp ------CEEEECSSCCC-CSEEHHHHHHTTSCC------CTT-H---HHHHHHHTTCHHHHTTSTTGGGSEESTT-SBCC
T ss_pred ------EEEEEcCCCcC-CCcCHHHHhhCcccc------CHH-H---HHHHHHHHhhHHHHHhccccccccccCC-CCCC
Confidence 28999999864 578999999876321 111 1 22334444432111 0011111 3479
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCceEEEEecCccHHHHHhcCeEEEEecCC
Q 001291 997 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR---NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1106)
Q Consensus 997 S~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~---~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG 1073 (1106)
|||||||++|||||+.+|+||||||||+|||+.++..+++.|+ ++. +|+|||++|||++. + ..||++++|++ |
T Consensus 129 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~-G 204 (237)
T 2cbz_A 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSG-G 204 (237)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEET-T
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeC-C
Confidence 9999999999999999999999999999999999999999995 343 58999999999974 4 57999999985 7
Q ss_pred EEEEEecCC
Q 001291 1074 REVYVGPLG 1082 (1106)
Q Consensus 1074 ~~~~~G~~~ 1082 (1106)
++++.|+..
T Consensus 205 ~i~~~g~~~ 213 (237)
T 2cbz_A 205 KISEMGSYQ 213 (237)
T ss_dssp EEEEEECHH
T ss_pred EEEEeCCHH
Confidence 999988754
No 83
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.2e-36 Score=371.20 Aligned_cols=213 Identities=26% Similarity=0.356 Sum_probs=173.5
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
..+.++||+|+|+. +.++|+|+||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 353 ~~i~~~~v~~~y~~------------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~ 418 (598)
T 3qf4_B 353 GEIEFKNVWFSYDK------------KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV--DRGQILVDGID 418 (598)
T ss_dssp CCEEEEEEECCSSS------------SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred CeEEEEEEEEECCC------------CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC--CCeEEEECCEE
Confidence 36899999988742 23589999999999999999999999999999999998764 58999999988
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccccccc-------CCC
Q 001291 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV-------GLP 991 (1106)
Q Consensus 922 ~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-------~~~ 991 (1106)
... ..+++.+|||+|++.+++ .||+||+.++.. .... +.++++++.+++.+..+... +..
T Consensus 419 i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~ 488 (598)
T 3qf4_B 419 IRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGNP-----GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTDN 488 (598)
T ss_dssp GGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSST-----TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHHH
T ss_pred hhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccchhcCC
Confidence 654 345668999999998775 699999987621 1111 23456666666655443321 111
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
+.+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++. +|+|+|++||+++. + +.||++++|++
T Consensus 489 -g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~ 564 (598)
T 3qf4_B 489 -GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLRD 564 (598)
T ss_dssp -HTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEECS
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEEC
Confidence 24699999999999999999999999999999999999999999999985 59999999999984 4 56999999985
Q ss_pred CCEEEEEecCCC
Q 001291 1072 GGREVYVGPLGH 1083 (1106)
Q Consensus 1072 gG~~~~~G~~~~ 1083 (1106)
|++++.|+..+
T Consensus 565 -G~i~~~g~~~~ 575 (598)
T 3qf4_B 565 -GEIVEMGKHDE 575 (598)
T ss_dssp -SSEEECSCHHH
T ss_pred -CEEEEECCHHH
Confidence 78999998653
No 84
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=8e-37 Score=325.19 Aligned_cols=188 Identities=18% Similarity=0.257 Sum_probs=157.7
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHH
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRE 245 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1106)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++. ..++.++||+|++.+++.+||+|
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e 97 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVED 97 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHH
Confidence 6999999999999999999999999999999999999998 999999998875 23567999999998899999999
Q ss_pred HHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCC
Q 001291 246 TLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVS 325 (1106)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLS 325 (1106)
|+.|+....+. . . + ...++.+++.+||+.. +..+++ ||
T Consensus 98 nl~~~~~~~~~-~--------------------~--------------~-~~~~~~~l~~~gl~~~-~~~~~~-----LS 135 (214)
T 1sgw_A 98 YLKAVASLYGV-K--------------------V--------------N-KNEIMDALESVEVLDL-KKKLGE-----LS 135 (214)
T ss_dssp HHHHHHHHTTC-C--------------------C--------------C-HHHHHHHHHHTTCCCT-TSBGGG-----SC
T ss_pred HHHHHHHhcCC-c--------------------h--------------H-HHHHHHHHHHcCCCcC-CCChhh-----CC
Confidence 99997543211 0 0 0 1235678999999877 766654 99
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 326 GGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
|||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.+ .+ ++|+.++|+..++..++|+|+++ .|+|
T Consensus 136 gGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g-~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILK-EK-GIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHH-HH-SEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHh-CC-CEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 9999999999999999999999999999999999999999998764 34 45556778888888888888755 4444
No 85
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.9e-36 Score=369.09 Aligned_cols=214 Identities=21% Similarity=0.316 Sum_probs=175.1
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
..++++|++|+|+. ++.++|+|+||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~--~~G~i~i~g~~ 406 (587)
T 3qf4_A 340 GSVSFENVEFRYFE-----------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP--ERGRVEVDELD 406 (587)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCC--SEEEEEESSSB
T ss_pred CcEEEEEEEEEcCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC--CCcEEEECCEE
Confidence 46999999998852 234689999999999999999999999999999999998764 58999999998
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 001291 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR-------QSLVGLP 991 (1106)
Q Consensus 922 ~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~-------~~~~~~~ 991 (1106)
... ..+++.+|||+|++.+++ .|++||+.++.. ... ++.+.++++..++.+.. +..++..
T Consensus 407 i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~-----~~~----~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~ 476 (587)
T 3qf4_A 407 VRTVKLKDLRGHISAVPQETVLFS-GTIKENLKWGRE-----DAT----DDEIVEAAKIAQIHDFIISLPEGYDSRVERG 476 (587)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCCS-EEHHHHHTTTCS-----SCC----HHHHHHHHHHTTCHHHHHTSSSGGGCEECSS
T ss_pred cccCCHHHHHhheEEECCCCcCcC-ccHHHHHhccCC-----CCC----HHHHHHHHHHhCcHHHHHhcccchhhHhcCC
Confidence 754 335677999999998875 599999987531 111 22345666666665432 2333433
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
| .+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++. +|+|+|++||+++. ...||++++|++
T Consensus 477 ~-~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--~~~~d~i~vl~~ 552 (587)
T 3qf4_A 477 G-RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPT--ALLADKILVLHE 552 (587)
T ss_dssp S-CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHH--HTTSSEEEEEET
T ss_pred C-CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHH--HHhCCEEEEEEC
Confidence 3 4699999999999999999999999999999999999999999999875 58999999999863 468999999985
Q ss_pred CCEEEEEecCCC
Q 001291 1072 GGREVYVGPLGH 1083 (1106)
Q Consensus 1072 gG~~~~~G~~~~ 1083 (1106)
|++++.|+..+
T Consensus 553 -G~i~~~g~~~e 563 (587)
T 3qf4_A 553 -GKVAGFGTHKE 563 (587)
T ss_dssp -TEEEEEECHHH
T ss_pred -CEEEEECCHHH
Confidence 79999998754
No 86
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=6.4e-36 Score=367.50 Aligned_cols=218 Identities=27% Similarity=0.373 Sum_probs=179.0
Q ss_pred e-eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 843 S-LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 843 ~-l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
. +.++||+++|+.. ++.++|+|+||++++||++||+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 340 ~~i~~~~v~~~y~~~----------~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p--~~G~i~~~g~~ 407 (595)
T 2yl4_A 340 GALEFKNVHFAYPAR----------PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDP--ASGTISLDGHD 407 (595)
T ss_dssp CCEEEEEEEEECSSC----------TTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred CeEEEEEEEEEeCCC----------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCcEEEECCEE
Confidence 5 8999999988521 124699999999999999999999999999999999998764 58999999988
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 001291 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR-------QSLVGLP 991 (1106)
Q Consensus 922 ~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~-------~~~~~~~ 991 (1106)
... ..+++.+|||+|++.+++ .||+||+.++...+ . ...++.++++++.+++.+.. +..++..
T Consensus 408 i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~--~----~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~ 480 (595)
T 2yl4_A 408 IRQLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGADDP--S----SVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEK 480 (595)
T ss_dssp TTTBCHHHHHHSEEEECSSCCCCS-SBHHHHHHTTSSST--T----TSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSS
T ss_pred hhhCCHHHHHhceEEEccCCcccC-CCHHHHHhhcCCCc--c----ccCHHHHHHHHHHcCCHHHHHhCcccccccccCC
Confidence 753 335567999999998876 59999998864210 0 11234578889999886543 3334433
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
| .+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++.+ |+|+|++||+++. + +.||++++|++
T Consensus 481 ~-~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~ 556 (595)
T 2yl4_A 481 G-VLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLST-I-KNANMVAVLDQ 556 (595)
T ss_dssp S-CCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHH-H-HHSSEEEEEET
T ss_pred C-CcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHH-H-HcCCEEEEEEC
Confidence 3 46999999999999999999999999999999999999999999999865 8999999999863 4 67999999985
Q ss_pred CCEEEEEecCCCc
Q 001291 1072 GGREVYVGPLGHH 1084 (1106)
Q Consensus 1072 gG~~~~~G~~~~~ 1084 (1106)
|++++.|+..+.
T Consensus 557 -G~i~~~g~~~~l 568 (595)
T 2yl4_A 557 -GKITEYGKHEEL 568 (595)
T ss_dssp -TEEEEEECSCC-
T ss_pred -CEEEEECCHHHH
Confidence 799999987653
No 87
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2.6e-36 Score=369.52 Aligned_cols=214 Identities=25% Similarity=0.356 Sum_probs=175.9
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
..++++|++|+|+. ++.++|+|+||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 338 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~ 404 (578)
T 4a82_A 338 GRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGHN 404 (578)
T ss_dssp CCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC--SEEEEEETTEE
T ss_pred CeEEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCEE
Confidence 46899999988753 234689999999999999999999999999999999998764 58999999988
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccccc-------ccCCC
Q 001291 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS-------LVGLP 991 (1106)
Q Consensus 922 ~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~-------~~~~~ 991 (1106)
... ..+++.+|||+|++.+++. ||+||+.++.. ... ++.+.++++..++.+..+. .++..
T Consensus 405 ~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~ 474 (578)
T 4a82_A 405 IKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRP-----TAT----DEEVVEAAKMANAHDFIMNLPQGYDTEVGER 474 (578)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCS-----SCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBCCGG
T ss_pred hhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCC-----CCC----HHHHHHHHHHhCcHHHHHhCcchhhhhhccC
Confidence 654 3456679999999988765 99999987631 111 2346677777777554332 23333
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
| .+||||||||++|||||+++|+||+|||||||||+.+++.+++.++++. +|+|+|++|||++. + +.||++++|++
T Consensus 475 g-~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~ 550 (578)
T 4a82_A 475 G-VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST-I-THADKIVVIEN 550 (578)
T ss_dssp G-TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-T-TTCSEEEEEET
T ss_pred C-CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEEC
Confidence 3 4699999999999999999999999999999999999999999999885 57999999999984 4 67999999985
Q ss_pred CCEEEEEecCCC
Q 001291 1072 GGREVYVGPLGH 1083 (1106)
Q Consensus 1072 gG~~~~~G~~~~ 1083 (1106)
|++++.|+..+
T Consensus 551 -G~i~~~g~~~e 561 (578)
T 4a82_A 551 -GHIVETGTHRE 561 (578)
T ss_dssp -TEEEEEECHHH
T ss_pred -CEEEEECCHHH
Confidence 79999998653
No 88
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=8.9e-36 Score=321.71 Aligned_cols=196 Identities=21% Similarity=0.312 Sum_probs=150.3
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++|++|++.+++. ||+
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g----------~i~~v~q~~~~~~~-tv~ 86 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQFSWIMPG-TIK 86 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS----------CEEEECSSCCCCSB-CHH
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC----------EEEEEecCCcccCC-CHH
Confidence 46999999999999999999999999999999999999998 99999998 49999999887774 999
Q ss_pred HHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCC
Q 001291 245 ETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV 324 (1106)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgL 324 (1106)
||+.|+.... . ....+. .+.. ..+..++. ++...++.++. ....|
T Consensus 87 enl~~~~~~~----~-~~~~~~---~~~~------------------------~l~~~~~~--~~~~~~~~~~~-~~~~L 131 (229)
T 2pze_A 87 ENIIFGVSYD----E-YRYRSV---IKAC------------------------QLEEDISK--FAEKDNIVLGE-GGITL 131 (229)
T ss_dssp HHHHTTSCCC----H-HHHHHH---HHHT------------------------TCHHHHTT--STTGGGSCBCT-TCTTS
T ss_pred HHhhccCCcC----h-HHHHHH---HHHh------------------------CcHHHHHh--CcccccccccC-CCCcC
Confidence 9999853110 0 000000 0000 00111111 12223444442 34569
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHH-HHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNC-FKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 325 SGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~-l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
||||||||+|||||+.+|++++|||||+|||+.++..+++. ++++. . +++|+.++|+..++. .||+|++|++|++
T Consensus 132 SgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~-~~tvi~vtH~~~~~~-~~d~v~~l~~G~i 207 (229)
T 2pze_A 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--A-NKTRILVTSKMEHLK-KADKILILHEGSS 207 (229)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--T-TSEEEEECCCHHHHH-HCSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--C-CCEEEEEcCChHHHH-hCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999986 34432 2 345666778877764 6999999999999
Q ss_pred EEEcCHHHHH
Q 001291 404 VYQGPRELVL 413 (1106)
Q Consensus 404 v~~G~~~~~~ 413 (1106)
++.|+++++.
T Consensus 208 ~~~g~~~~~~ 217 (229)
T 2pze_A 208 YFYGTFSELQ 217 (229)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9999998875
No 89
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=9.2e-36 Score=365.13 Aligned_cols=213 Identities=24% Similarity=0.305 Sum_probs=176.7
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|++++|+. +++++|+|+||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 341 ~i~~~~v~~~y~~-----------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p--~~G~i~~~g~~~ 407 (582)
T 3b60_A 341 DLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI--DEGHILMDGHDL 407 (582)
T ss_dssp CEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC--SEEEEEETTEET
T ss_pred cEEEEEEEEEcCC-----------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC--CCCeEEECCEEc
Confidence 5899999988742 114589999999999999999999999999999999998764 589999999886
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccccc-------ccCCCC
Q 001291 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS-------LVGLPG 992 (1106)
Q Consensus 923 ~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~-------~~~~~g 992 (1106)
.. ..+++.+|||+|++.+++ .|++||+.++.. .+.. ++.++++++.+++.+..+. .++..
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~----~~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~- 477 (582)
T 3b60_A 408 REYTLASLRNQVALVSQNVHLFN-DTVANNIAYART----EEYS----REQIEEAARMAYAMDFINKMDNGLDTIIGEN- 477 (582)
T ss_dssp TTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTT----SCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT-
T ss_pred cccCHHHHHhhCeEEccCCcCCC-CCHHHHHhccCC----CCCC----HHHHHHHHHHcCCHHHHHhccccccccccCC-
Confidence 43 335567999999998876 599999988631 1111 2447788888888765443 23333
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecC
Q 001291 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 993 ~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~g 1072 (1106)
+.+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++.+ |+|+|++||+++. + +.||++++|++
T Consensus 478 ~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~- 553 (582)
T 3b60_A 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST-I-EQADEIVVVED- 553 (582)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG-T-TTCSEEEEEET-
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH-H-HhCCEEEEEEC-
Confidence 357999999999999999999999999999999999999999999999864 9999999999974 3 67999999985
Q ss_pred CEEEEEecCC
Q 001291 1073 GREVYVGPLG 1082 (1106)
Q Consensus 1073 G~~~~~G~~~ 1082 (1106)
|++++.|+..
T Consensus 554 G~i~~~g~~~ 563 (582)
T 3b60_A 554 GIIVERGTHS 563 (582)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEecCHH
Confidence 7999999754
No 90
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=6.9e-36 Score=324.08 Aligned_cols=199 Identities=23% Similarity=0.301 Sum_probs=150.7
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++||+|++. ++.+||+
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~-~~~~tv~ 83 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG----------SVAYVPQQAW-IQNDSLR 83 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS----------CEEEECSSCC-CCSEEHH
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC----------EEEEEcCCCc-CCCcCHH
Confidence 46999999999999999999999999999999999999997 99999998 4999999975 5689999
Q ss_pred HHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc-ccccccccCccCCC
Q 001291 245 ETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADTMVGDEMRRG 323 (1106)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~rg 323 (1106)
||+.|+.... ... ..++ .+ ...+.+.+++. ...++.++ .....
T Consensus 84 enl~~~~~~~--~~~---~~~~---~~---------------------------~~~l~~~~~~~~~~~~~~~~-~~~~~ 127 (237)
T 2cbz_A 84 ENILFGCQLE--EPY---YRSV---IQ---------------------------ACALLPDLEILPSGDRTEIG-EKGVN 127 (237)
T ss_dssp HHHHTTSCCC--TTH---HHHH---HH---------------------------HTTCHHHHTTSTTGGGSEES-TTSBC
T ss_pred HHhhCccccC--HHH---HHHH---HH---------------------------HHhhHHHHHhcccccccccc-CCCCC
Confidence 9999853210 000 0000 00 00012223321 12223333 23456
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++......+++|+.++|+...+ ..||+|++|++|++
T Consensus 128 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~-~~~d~v~~l~~G~i 206 (237)
T 2cbz_A 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYL-PQVDVIIVMSGGKI 206 (237)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTG-GGSSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHH-HhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999884211111245566677777765 57999999999999
Q ss_pred EEEcCHHHHHH
Q 001291 404 VYQGPRELVLE 414 (1106)
Q Consensus 404 v~~G~~~~~~~ 414 (1106)
++.|+++++..
T Consensus 207 ~~~g~~~~~~~ 217 (237)
T 2cbz_A 207 SEMGSYQELLA 217 (237)
T ss_dssp EEEECHHHHHH
T ss_pred EEeCCHHHHhh
Confidence 99999988754
No 91
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.2e-35 Score=363.45 Aligned_cols=208 Identities=24% Similarity=0.392 Sum_probs=165.4
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++.
T Consensus 354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~- 429 (578)
T 4a82_A 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD- 429 (578)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-
T ss_pred CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-
Confidence 46999999999999999999999999999999999999998 9999999999876543 4679999999877765
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccC
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
||+||+.|+.... ..+...+.+ +..+ .+.. .-.+++..||.+|+ .+
T Consensus 430 tv~eni~~~~~~~----~~~~~~~~~---~~~~------------------------~~~~--~~~lp~g~~t~~~~-~g 475 (578)
T 4a82_A 430 TVKENILLGRPTA----TDEEVVEAA---KMAN------------------------AHDF--IMNLPQGYDTEVGE-RG 475 (578)
T ss_dssp BHHHHHGGGCSSC----CHHHHHHHH---HHTT------------------------CHHH--HHTSTTGGGCBCCG-GG
T ss_pred cHHHHHhcCCCCC----CHHHHHHHH---HHhC------------------------cHHH--HHhCcchhhhhhcc-CC
Confidence 9999998863210 000000000 0000 0001 12456677899985 45
Q ss_pred CCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCC
Q 001291 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 401 (1106)
..|||||||||+|||||+.+|++++|||||||||+.+...+.+.++++. .++| ++.++|+...+ ..||+|++|++|
T Consensus 476 ~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t-~i~itH~l~~~-~~~d~i~~l~~G 551 (578)
T 4a82_A 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRT-TLIVAHRLSTI-THADKIVVIENG 551 (578)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSE-EEEECSSGGGT-TTCSEEEEEETT
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCE-EEEEecCHHHH-HcCCEEEEEECC
Confidence 5699999999999999999999999999999999999999999998763 3445 55577877766 569999999999
Q ss_pred eEEEEcCHHHHHH
Q 001291 402 QIVYQGPRELVLE 414 (1106)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1106)
+++++|+++++.+
T Consensus 552 ~i~~~g~~~el~~ 564 (578)
T 4a82_A 552 HIVETGTHRELIA 564 (578)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
No 92
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.8e-35 Score=363.53 Aligned_cols=204 Identities=24% Similarity=0.387 Sum_probs=165.6
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|++.+++ .
T Consensus 357 ~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 432 (595)
T 2yl4_A 357 VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS-C 432 (595)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCS---EEEEEETTEETTTBCHHHHHHSEEEECSSCCCCS-S
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCEEhhhCCHHHHHhceEEEccCCcccC-C
Confidence 46999999999999999999999999999999999999998 9999999999876543 457999999988776 5
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCC-------cccccc
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGL-------DICADT 314 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~dt 314 (1106)
||+||+.|+..... + .+ ...++++++.+|+ ++..||
T Consensus 433 tv~eni~~~~~~~~-~---------------------~~---------------~~~~~~~~~~~~l~~~~~~l~~g~~~ 475 (595)
T 2yl4_A 433 SIAENIAYGADDPS-S---------------------VT---------------AEEIQRVAEVANAVAFIRNFPQGFNT 475 (595)
T ss_dssp BHHHHHHTTSSSTT-T---------------------SC---------------HHHHHHHHHHTTCHHHHHTSSSGGGC
T ss_pred CHHHHHhhcCCCcc-c---------------------cC---------------HHHHHHHHHHcCCHHHHHhCcccccc
Confidence 99999998642100 0 00 0123344555544 456788
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 315 ~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
.+|+ .+..|||||||||+|||||+.+|++|+||||||+||+.++..+.+.++++.+ ++ +++.++|+...+ +.||+
T Consensus 476 ~~~~-~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~-tvi~itH~~~~~-~~~d~ 550 (595)
T 2yl4_A 476 VVGE-KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GR-TVLVIAHRLSTI-KNANM 550 (595)
T ss_dssp BCSS-SSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--TS-EEEEECCCHHHH-HHSSE
T ss_pred cccC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc--CC-EEEEEecCHHHH-HcCCE
Confidence 8876 3566999999999999999999999999999999999999999999998643 44 555567777666 56999
Q ss_pred EEEecCCeEEEEcCHHHHHH
Q 001291 395 IILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (1106)
|++|++|++++.|+++++.+
T Consensus 551 i~~l~~G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 551 VAVLDQGKITEYGKHEELLS 570 (595)
T ss_dssp EEEEETTEEEEEECSCC---
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999988753
No 93
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.8e-35 Score=362.17 Aligned_cols=208 Identities=25% Similarity=0.378 Sum_probs=165.5
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|++.+|+ .
T Consensus 356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 431 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFS-G 431 (587)
T ss_dssp CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCS-E
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCCcCcC-c
Confidence 46999999999999999999999999999999999999998 9999999999876543 467999999987775 5
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccC
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
||+||+.|+.... ..+ ++....+..+ .+..+ -.+++..||.+|+ .+
T Consensus 432 tv~eni~~~~~~~----~~~---~~~~~~~~~~------------------------~~~~i--~~l~~g~~~~~~~-~~ 477 (587)
T 3qf4_A 432 TIKENLKWGREDA----TDD---EIVEAAKIAQ------------------------IHDFI--ISLPEGYDSRVER-GG 477 (587)
T ss_dssp EHHHHHTTTCSSC----CHH---HHHHHHHHTT------------------------CHHHH--HTSSSGGGCEECS-SS
T ss_pred cHHHHHhccCCCC----CHH---HHHHHHHHhC------------------------cHHHH--HhcccchhhHhcC-CC
Confidence 9999998863210 000 0000000000 01111 2456667888885 45
Q ss_pred CCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCC
Q 001291 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 401 (1106)
..||||||||++|||||+.+|++|+||||||+||+.+...+.+.++++. .+ .+++.++|+...+ ..||+|++|++|
T Consensus 478 ~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~-~tvi~itH~l~~~-~~~d~i~vl~~G 553 (587)
T 3qf4_A 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KG-CTTFIITQKIPTA-LLADKILVLHEG 553 (587)
T ss_dssp CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TT-CEEEEEESCHHHH-TTSSEEEEEETT
T ss_pred CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CC-CEEEEEecChHHH-HhCCEEEEEECC
Confidence 5699999999999999999999999999999999999999999998863 34 4555577777665 589999999999
Q ss_pred eEEEEcCHHHHHH
Q 001291 402 QIVYQGPRELVLE 414 (1106)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1106)
+++++|+++++.+
T Consensus 554 ~i~~~g~~~el~~ 566 (587)
T 3qf4_A 554 KVAGFGTHKELLE 566 (587)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999875
No 94
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=4.5e-35 Score=359.00 Aligned_cols=202 Identities=23% Similarity=0.352 Sum_probs=164.1
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN-D 431 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCCCcccc-c
Confidence 46999999999999999999999999999999999999998 9999999998865432 467999999988776 5
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCC-------cccccc
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGL-------DICADT 314 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~dt 314 (1106)
||+||+.|+.. ... .. ..++++++.+|+ ++..||
T Consensus 432 tv~eni~~~~~-~~~--~~------------------------------------~~~~~~~~~~~l~~~~~~~p~g~~t 472 (582)
T 3b5x_A 432 TIANNIAYAAE-GEY--TR------------------------------------EQIEQAARQAHAMEFIENMPQGLDT 472 (582)
T ss_pred cHHHHHhccCC-CCC--CH------------------------------------HHHHHHHHHCCCHHHHHhCcccccc
Confidence 99999998631 000 00 012233333333 345678
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 315 ~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
.+|+ .+..||||||||++|||||+.+|++|+|||||||||+.++..+.+.|+++. .++| ++.++|+...+ +.||+
T Consensus 473 ~~~~-~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t-vi~itH~~~~~-~~~d~ 547 (582)
T 3b5x_A 473 VIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ--KNKT-VLVIAHRLSTI-EQADE 547 (582)
T ss_pred hhcC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCE-EEEEecCHHHH-HhCCE
Confidence 8875 456699999999999999999999999999999999999999999999863 3444 55566766655 57999
Q ss_pred EEEecCCeEEEEcCHHHHHH
Q 001291 395 IILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (1106)
|++|++|++++.|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 548 ILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998864
No 95
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=5e-35 Score=358.59 Aligned_cols=202 Identities=22% Similarity=0.353 Sum_probs=165.0
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-S
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccCCcCCC-C
Confidence 46999999999999999999999999999999999999998 9999999999876543 457999999988776 5
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCC-------cccccc
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGL-------DICADT 314 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~dt 314 (1106)
||+||+.|+.. ... .. ..++++++.+|+ ++..||
T Consensus 432 tv~eni~~~~~-~~~--~~------------------------------------~~~~~~l~~~~l~~~~~~~p~g~~~ 472 (582)
T 3b60_A 432 TVANNIAYART-EEY--SR------------------------------------EQIEEAARMAYAMDFINKMDNGLDT 472 (582)
T ss_dssp BHHHHHHTTTT-SCC--CH------------------------------------HHHHHHHHTTTCHHHHHHSTTGGGS
T ss_pred CHHHHHhccCC-CCC--CH------------------------------------HHHHHHHHHcCCHHHHHhccccccc
Confidence 99999998631 000 00 012223333333 345678
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 315 ~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
.+|+ .+..||||||||++||||++.+|++++|||||||||+.++..+.+.++++. .++| ++.++|+...+ +.||+
T Consensus 473 ~~~~-~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t-vi~itH~~~~~-~~~d~ 547 (582)
T 3b60_A 473 IIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRT-SLVIAHRLSTI-EQADE 547 (582)
T ss_dssp BCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH--TTSE-EEEECSCGGGT-TTCSE
T ss_pred cccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCE-EEEEeccHHHH-HhCCE
Confidence 8885 456699999999999999999999999999999999999999999999874 2444 55567776655 57999
Q ss_pred EEEecCCeEEEEcCHHHHHH
Q 001291 395 IILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (1106)
|++|++|++++.|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 548 IVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEecCHHHHHH
Confidence 99999999999999999864
No 96
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.7e-35 Score=361.53 Aligned_cols=208 Identities=25% Similarity=0.349 Sum_probs=164.6
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
.++|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.+||.++.+... ++.++||+|++.+++ .
T Consensus 368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 443 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-T 443 (598)
T ss_dssp SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-S
T ss_pred CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-c
Confidence 46999999999999999999999999999999999999998 9999999999876543 467999999987775 6
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccC
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
||+||+.++.... . .+ ++ .++....+ .+..+ -.++...||.+|+ .+
T Consensus 444 tv~eni~~~~~~~---~-~~---~~------------------~~~~~~~~------~~~~~--~~~~~g~~t~~~~-~g 489 (598)
T 3qf4_B 444 TVKENLKYGNPGA---T-DE---EI------------------KEAAKLTH------SDHFI--KHLPEGYETVLTD-NG 489 (598)
T ss_dssp BHHHHHHSSSTTC---C-TT---HH------------------HHHTTTTT------CHHHH--HTSTTGGGCBCHH-HH
T ss_pred cHHHHHhcCCCCC---C-HH---HH------------------HHHHHHhC------CHHHH--HhccccccchhcC-CC
Confidence 9999999863210 0 00 00 00000000 01111 1355567888885 44
Q ss_pred CCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCC
Q 001291 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 401 (1106)
..||||||||++|||||+.+|++|+||||||+||+.+...+.+.++++. .++ +++.++|+...+ ..||+|++|++|
T Consensus 490 ~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~-t~i~itH~l~~~-~~~d~i~~l~~G 565 (598)
T 3qf4_B 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--EGK-TSIIIAHRLNTI-KNADLIIVLRDG 565 (598)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTS-EEEEESCCTTHH-HHCSEEEEECSS
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--CCC-EEEEEecCHHHH-HcCCEEEEEECC
Confidence 5699999999999999999999999999999999999999999999863 344 455567777766 459999999999
Q ss_pred eEEEEcCHHHHHH
Q 001291 402 QIVYQGPRELVLE 414 (1106)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1106)
+++++|+++++.+
T Consensus 566 ~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 566 EIVEMGKHDELIQ 578 (598)
T ss_dssp SEEECSCHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
No 97
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.8e-34 Score=381.77 Aligned_cols=214 Identities=27% Similarity=0.392 Sum_probs=181.3
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.|+||+|+|+.. ++.++|+||||+|++|+++||+||||||||||+++|.|..+ +.+|+|.+||.++
T Consensus 415 ~I~~~nvsF~Y~~~----------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~--~~~G~I~idG~~i 482 (1321)
T 4f4c_A 415 DITVENVHFTYPSR----------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDGVDV 482 (1321)
T ss_dssp CEEEEEEEECCSSS----------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred cEEEEEeeeeCCCC----------CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc--cccCcccCCCccc
Confidence 68999999998743 23579999999999999999999999999999999999876 4589999999987
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCCC
Q 001291 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR-------QSLVGLPG 992 (1106)
Q Consensus 923 ~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~-------~~~~~~~g 992 (1106)
++ ..+++.+|||+|++.++. .|++||+.|+. .+.+ ++.+.++++..++.+.. +..+|..|
T Consensus 483 ~~~~~~~lr~~i~~v~Q~~~Lf~-~TI~eNI~~g~-----~~~~----~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G 552 (1321)
T 4f4c_A 483 RDINLEFLRKNVAVVSQEPALFN-CTIEENISLGK-----EGIT----REEMVAACKMANAEKFIKTLPNGYNTLVGDRG 552 (1321)
T ss_dssp TTSCHHHHHHHEEEECSSCCCCS-EEHHHHHHTTC-----TTCC----HHHHHHHHHHTTCHHHHHHSTTTTSSEESSSS
T ss_pred hhccHHHHhhcccccCCcceeeC-CchhHHHhhhc-----ccch----HHHHHHHHHHccchhHHHcCCCCCccEecCCC
Confidence 54 456778999999998875 69999999873 1222 34577888888775433 44566555
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecC
Q 001291 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 993 ~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~g 1072 (1106)
. +||||||||++||||++++|+||+||||||+||+++++.+++.|+++. +|+|+|+|||+++. ...||+|++|+ +
T Consensus 553 ~-~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls~--i~~aD~Iivl~-~ 627 (1321)
T 4f4c_A 553 T-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLST--IRNADLIISCK-N 627 (1321)
T ss_dssp C-CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTTT--TTTCSEEEEEE-T
T ss_pred C-CCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHHH--HHhCCEEEEee-C
Confidence 4 599999999999999999999999999999999999999999999876 58999999999974 58899999998 5
Q ss_pred CEEEEEecCCC
Q 001291 1073 GREVYVGPLGH 1083 (1106)
Q Consensus 1073 G~~~~~G~~~~ 1083 (1106)
|++++.|+..+
T Consensus 628 G~ive~Gth~e 638 (1321)
T 4f4c_A 628 GQVVEVGDHRA 638 (1321)
T ss_dssp TEEEEEECHHH
T ss_pred CeeeccCCHHH
Confidence 89999998643
No 98
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1e-34 Score=323.01 Aligned_cols=197 Identities=22% Similarity=0.362 Sum_probs=148.6
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|++|.. +.+|+||||+|++|+++||+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 40 ~l~~~~l~~~~---------------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g--- 99 (290)
T 2bbs_A 40 SLSFSNFSLLG---------------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 99 (290)
T ss_dssp ----------C---------------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS---
T ss_pred eEEEEEEEEcC---------------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC---
Confidence 47778877631 258999999999999999999999999999999999876 4689999987
Q ss_pred ChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccc-------cCCCCCCC
Q 001291 923 KQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL-------VGLPGVNG 995 (1106)
Q Consensus 923 ~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~-------~~~~g~~~ 995 (1106)
.+||++|++.+++ .||+||+. +. . ... ..+.++++.+++.+..+.. .+. .+.+
T Consensus 100 -------~i~~v~Q~~~l~~-~tv~enl~-~~--~----~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~ 159 (290)
T 2bbs_A 100 -------RISFCSQNSWIMP-GTIKENII-GV--S----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGE-GGIT 159 (290)
T ss_dssp -------CEEEECSSCCCCS-SBHHHHHH-TT--C----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CC
T ss_pred -------EEEEEeCCCccCc-ccHHHHhh-Cc--c----cch----HHHHHHHHHhChHHHHHhccccccchhcC-ccCc
Confidence 2899999988877 49999997 32 1 111 1234455666664432221 111 1347
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCE
Q 001291 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1106)
Q Consensus 996 LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l-~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~ 1074 (1106)
||||||||++|||||+.+|++|||||||+|||+.++..+++.+ +++. +|+|||++||+++. + ..||++++|++ |+
T Consensus 160 LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~-~-~~~d~i~~l~~-G~ 235 (290)
T 2bbs_A 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHE-GS 235 (290)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHH-H-HHSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHH-H-HcCCEEEEEEC-Ce
Confidence 9999999999999999999999999999999999999999974 4554 58999999999863 4 56999999985 78
Q ss_pred EEEEecCCC
Q 001291 1075 EVYVGPLGH 1083 (1106)
Q Consensus 1075 ~~~~G~~~~ 1083 (1106)
+++.|+..+
T Consensus 236 i~~~g~~~~ 244 (290)
T 2bbs_A 236 SYFYGTFSE 244 (290)
T ss_dssp EEEEECHHH
T ss_pred EEEeCCHHH
Confidence 999987643
No 99
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=3.8e-34 Score=377.80 Aligned_cols=215 Identities=27% Similarity=0.378 Sum_probs=175.0
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
..+.|+||+|+|+.. ++.++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 386 g~i~~~~v~~~y~~~----------~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~--~~G~i~i~g~~ 453 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSR----------KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP--LDGMVSIDGQD 453 (1284)
T ss_dssp CCEEEEEEEECCSST----------TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCC--SEEEEEETTEE
T ss_pred CeEEEEEEEEEcCCC----------CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEE
Confidence 468999999988632 124699999999999999999999999999999999998764 58999999988
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 001291 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR-------QSLVGLP 991 (1106)
Q Consensus 922 ~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~-------~~~~~~~ 991 (1106)
+.. ..+++.+|||+|++.+++. ||+||+.|+.. +.. ++.++++++..++.+.. +..++..
T Consensus 454 i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~ 523 (1284)
T 3g5u_A 454 IRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE-----DVT----MDEIEKAVKEANAYDFIMKLPHQFDTLVGER 523 (1284)
T ss_dssp GGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS-----SCC----HHHHHHHHHHTTCHHHHHHSTTGGGCCCSSS
T ss_pred HHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC-----CCC----HHHHHHHHHHhCcHHHHHhccccccccccCC
Confidence 654 3456679999999988764 99999998731 112 23355666666654322 3334444
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
| .+||||||||++|||||+++|+||+||||||+||+++++.+++.++++. +|+|+|+|||+++. + ..||+|++|++
T Consensus 524 g-~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-i-~~~d~i~vl~~ 599 (1284)
T 3g5u_A 524 G-AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLST-V-RNADVIAGFDG 599 (1284)
T ss_dssp S-CSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHH-H-TTCSEEEECSS
T ss_pred C-CccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEEC
Confidence 4 4699999999999999999999999999999999999999999998875 59999999999873 4 66999999974
Q ss_pred CCEEEEEecCCC
Q 001291 1072 GGREVYVGPLGH 1083 (1106)
Q Consensus 1072 gG~~~~~G~~~~ 1083 (1106)
|++++.|+..+
T Consensus 600 -G~i~~~g~~~~ 610 (1284)
T 3g5u_A 600 -GVIVEQGNHDE 610 (1284)
T ss_dssp -SCCCCEECHHH
T ss_pred -CEEEEECCHHH
Confidence 79999998643
No 100
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=5.6e-34 Score=317.11 Aligned_cols=194 Identities=21% Similarity=0.307 Sum_probs=146.8
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHH
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRE 245 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1106)
++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++||+|++.+++ .||+|
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~-~tv~e 117 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQNSWIMP-GTIKE 117 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS----------CEEEECSSCCCCS-SBHHH
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC----------EEEEEeCCCccCc-ccHHH
Confidence 5899999999999999999999999999999999999997 99999998 4899999987777 59999
Q ss_pred HHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCC
Q 001291 246 TLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVS 325 (1106)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLS 325 (1106)
|+. +.... . ....+. .+.. ..+..++.+ ....++.++. ....||
T Consensus 118 nl~-~~~~~----~-~~~~~~---~~~~------------------------~l~~~l~~~--~~~~~~~~~~-~~~~LS 161 (290)
T 2bbs_A 118 NII-GVSYD----E-YRYRSV---IKAC------------------------QLEEDISKF--AEKDNIVLGE-GGITLS 161 (290)
T ss_dssp HHH-TTCCC----H-HHHHHH---HHHT------------------------TCHHHHHTS--TTGGGCBC-----CCCC
T ss_pred Hhh-Ccccc----h-HHHHHH---HHHh------------------------ChHHHHHhc--cccccchhcC-ccCcCC
Confidence 997 32100 0 000000 0000 001112222 2223444442 245699
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHH-HHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeEE
Q 001291 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCF-KQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIV 404 (1106)
Q Consensus 326 GGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l-~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv 404 (1106)
|||||||+|||||+.+|++|+|||||+|||+.++..+++.+ +++. . +++|++++|+...+ ..||+|++|++|+++
T Consensus 162 gGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~-~~tviivtHd~~~~-~~~d~i~~l~~G~i~ 237 (290)
T 2bbs_A 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--A-NKTRILVTSKMEHL-KKADKILILHEGSSY 237 (290)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--T-TSEEEEECCCHHHH-HHSSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--C-CCEEEEEecCHHHH-HcCCEEEEEECCeEE
Confidence 99999999999999999999999999999999999999864 4432 2 45566678887766 569999999999999
Q ss_pred EEcCHHHHH
Q 001291 405 YQGPRELVL 413 (1106)
Q Consensus 405 ~~G~~~~~~ 413 (1106)
+.|+++++.
T Consensus 238 ~~g~~~~l~ 246 (290)
T 2bbs_A 238 FYGTFSELQ 246 (290)
T ss_dssp EEECHHHHH
T ss_pred EeCCHHHHh
Confidence 999998875
No 101
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=6.8e-31 Score=320.23 Aligned_cols=191 Identities=26% Similarity=0.309 Sum_probs=162.6
Q ss_pred eeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHH
Q 001291 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRET 246 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (1106)
.|+++|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.+ .+.++|++|+....+.+||.|+
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~ 437 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW----------DLTVAYKPQYIKAEYEGTVYEL 437 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEE----------eeEEEEEecCccCCCCCcHHHH
Confidence 577788889999999999999999999999999999998 899876 2369999999877788999998
Q ss_pred HHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCCh
Q 001291 247 LAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSG 326 (1106)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSG 326 (1106)
+.+..... . . ....++.+++.+||.+.+++.+++ |||
T Consensus 438 ~~~~~~~~-----------~---~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSG 474 (607)
T 3bk7_A 438 LSKIDSSK-----------L---N------------------------SNFYKTELLKPLGIIDLYDRNVED-----LSG 474 (607)
T ss_dssp HHHHHHHH-----------H---H------------------------CHHHHHHTHHHHTCTTTTTSBGGG-----CCH
T ss_pred HHhhhccC-----------C---C------------------------HHHHHHHHHHHcCCchHhcCChhh-----CCH
Confidence 86531100 0 0 012356789999999988888876 999
Q ss_pred hhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC--CeEE
Q 001291 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD--GQIV 404 (1106)
Q Consensus 327 GqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~--G~iv 404 (1106)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++.. +.+|+.++|+..++..+||+|++|++ |+++
T Consensus 475 Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~-g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~ 553 (607)
T 3bk7_A 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN-EKTALVVEHDVLMIDYVSDRLIVFEGEPGRHG 553 (607)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEcCCcceEE
Confidence 99999999999999999999999999999999999999999886543 45566689999999999999999986 8899
Q ss_pred EEcCHHHHHH
Q 001291 405 YQGPRELVLE 414 (1106)
Q Consensus 405 ~~G~~~~~~~ 414 (1106)
..|+++++..
T Consensus 554 ~~g~p~~~~~ 563 (607)
T 3bk7_A 554 RALPPMGMRE 563 (607)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
No 102
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=9.3e-31 Score=316.04 Aligned_cols=191 Identities=25% Similarity=0.307 Sum_probs=161.1
Q ss_pred eeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHH
Q 001291 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRET 246 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (1106)
.|+++|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.+ ...++||+|+....+.+||.|+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~ 367 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW----------DLTVAYKPQYIKADYEGTVYEL 367 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE----------CceEEEEecCCcCCCCCcHHHH
Confidence 567777888999999999999999999999999999998 899875 2369999999877788999988
Q ss_pred HHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCCh
Q 001291 247 LAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSG 326 (1106)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSG 326 (1106)
+....... .. ....++.+++.+||.+..++.+++ |||
T Consensus 368 ~~~~~~~~-----------~~---------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSG 404 (538)
T 1yqt_A 368 LSKIDASK-----------LN---------------------------SNFYKTELLKPLGIIDLYDREVNE-----LSG 404 (538)
T ss_dssp HHHHHHHH-----------HT---------------------------CHHHHHHTTTTTTCGGGTTSBGGG-----CCH
T ss_pred HHhhhccC-----------CC---------------------------HHHHHHHHHHHcCChhhhcCChhh-----CCH
Confidence 76531100 00 012356678889999888888876 999
Q ss_pred hhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC--CeEE
Q 001291 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD--GQIV 404 (1106)
Q Consensus 327 GqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~--G~iv 404 (1106)
||||||+||++|+.+|++|+|||||+|||..++..+.+.|++++...+ .+|++++|+..++..+||+|++|++ |+++
T Consensus 405 Ge~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g-~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~ 483 (538)
T 1yqt_A 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE-KTALVVEHDVLMIDYVSDRLMVFEGEPGKYG 483 (538)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHT-CEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEeCCcceEe
Confidence 999999999999999999999999999999999999999998764344 4566689999999999999999986 8999
Q ss_pred EEcCHHHHHH
Q 001291 405 YQGPRELVLE 414 (1106)
Q Consensus 405 ~~G~~~~~~~ 414 (1106)
..|+++++..
T Consensus 484 ~~g~~~~~~~ 493 (538)
T 1yqt_A 484 RALPPMGMRE 493 (538)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
No 103
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=2.2e-30 Score=311.75 Aligned_cols=192 Identities=20% Similarity=0.212 Sum_probs=160.2
Q ss_pred eeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHH
Q 001291 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRET 246 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (1106)
.|+++|+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++| +.++|++|+....+.+||+||
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~---------~~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK---------QILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSC---------CCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC---------eeeEeechhcccccCCCHHHH
Confidence 466677889999999999999999999999999999998 99998765 358999998766678999999
Q ss_pred HHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCCh
Q 001291 247 LAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSG 326 (1106)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSG 326 (1106)
+.+..... . . . ....++.+++.+||.+..+..+++ |||
T Consensus 351 l~~~~~~~-~--------------------~-~---------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSG 388 (538)
T 3ozx_A 351 LENASKDA-L--------------------S-T---------------SSWFFEEVTKRLNLHRLLESNVND-----LSG 388 (538)
T ss_dssp HHHHCSST-T--------------------C-T---------------TSHHHHHTTTTTTGGGCTTSBGGG-----CCH
T ss_pred HHHhhhhc-c--------------------c-h---------------hHHHHHHHHHHcCCHHHhcCChhh-----CCH
Confidence 98732100 0 0 0 012346678889999988888876 999
Q ss_pred hhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC--CeEE
Q 001291 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD--GQIV 404 (1106)
Q Consensus 327 GqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~--G~iv 404 (1106)
||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++. .+++|+.++|+..++..+||+|++|++ |.+.
T Consensus 389 Gq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~-~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~ 467 (538)
T 3ozx_A 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRE-RKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAG 467 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEeCCcceec
Confidence 9999999999999999999999999999999999999999998754 456667789999999999999999986 6677
Q ss_pred EEcCHHHHH
Q 001291 405 YQGPRELVL 413 (1106)
Q Consensus 405 ~~G~~~~~~ 413 (1106)
..|++.++.
T Consensus 468 ~~~~~~~~~ 476 (538)
T 3ozx_A 468 LATSPVTLK 476 (538)
T ss_dssp EECCCEEHH
T ss_pred cCCChHHHH
Confidence 777765543
No 104
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.4e-30 Score=311.61 Aligned_cols=193 Identities=24% Similarity=0.228 Sum_probs=161.4
Q ss_pred ceeeeceeEEEeCc-----eEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCC
Q 001291 165 LTILKDVSGIVKPG-----RLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIG 239 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G-----~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~ 239 (1106)
..+|+|+|+++++| |+++|+|||||||||||++|+|.++|+ +|+. + ....++|++|+.....
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~----~~~~i~~~~q~~~~~~ 426 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I----PKLNVSMKPQKIAPKF 426 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C----CSCCEEEECSSCCCCC
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c----cCCcEEEecccccccC
Confidence 35789999999999 779999999999999999999999997 7752 1 1346999999876666
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCc
Q 001291 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDE 319 (1106)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1106)
..||+|++.... .+. . . ....++.+++.+||.+.++..+++
T Consensus 427 ~~tv~e~~~~~~--~~~--~-----------------~-----------------~~~~~~~~l~~l~l~~~~~~~~~~- 467 (608)
T 3j16_B 427 PGTVRQLFFKKI--RGQ--F-----------------L-----------------NPQFQTDVVKPLRIDDIIDQEVQH- 467 (608)
T ss_dssp CSBHHHHHHHHC--SST--T-----------------T-----------------SHHHHHHTHHHHTSTTTSSSBSSS-
T ss_pred CccHHHHHHHHh--hcc--c-----------------c-----------------cHHHHHHHHHHcCChhhhcCChhh-
Confidence 789999875321 110 0 0 012345678999999999988876
Q ss_pred cCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEec
Q 001291 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1106)
Q Consensus 320 ~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 399 (1106)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+.. +.+|+.++|+..++..++|+|++|+
T Consensus 468 ----LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~-g~tviivtHdl~~~~~~aDrvivl~ 542 (608)
T 3j16_B 468 ----LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHN-KKTAFIVEHDFIMATYLADKVIVFE 542 (608)
T ss_dssp ----CCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHH-TCEEEEECSCHHHHHHHCSEEEECE
T ss_pred ----CCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999886544 4556668999999999999999998
Q ss_pred C--CeEEEEcCHHHHHH
Q 001291 400 D--GQIVYQGPRELVLE 414 (1106)
Q Consensus 400 ~--G~iv~~G~~~~~~~ 414 (1106)
+ |+++..|++++++.
T Consensus 543 ~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 543 GIPSKNAHARAPESLLT 559 (608)
T ss_dssp EETTTEEECCCCEEHHH
T ss_pred CCCCeEEecCChHHHhh
Confidence 6 99999999998875
No 105
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.96 E-value=1.1e-32 Score=334.10 Aligned_cols=154 Identities=18% Similarity=0.175 Sum_probs=113.6
Q ss_pred eeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhh
Q 001291 876 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAW 955 (1106)
Q Consensus 876 s~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~ 955 (1106)
++.+++|++++|+|+||||||||++.++|.... .|. +.+.|++|++. ..+.++.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~----~~l~~~~----- 328 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESR----AQLLRNA----- 328 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCH----HHHHHHH-----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCH----HHHHHHH-----
Confidence 458999999999999999999999999985321 121 12455566531 1222222
Q ss_pred hcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH-----H
Q 001291 956 LRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-----A 1030 (1106)
Q Consensus 956 ~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~-----~ 1030 (1106)
.+.. .. +++ +...++..+.+.. +..||+||+||+++|+++..+|++|++| ||++||.. .
T Consensus 329 ~~~g--~~-------~~~-~~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 329 YSWG--MD-------FEE-MERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp HTTS--CC-------HHH-HHHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred HHcC--CC-------HHH-HHhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 1111 11 122 2234555444443 2469999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHhCCceEEEEecCc----------cHHHHHhcCeEEEEecC
Q 001291 1031 AAIVMRTVRNTVDTGRTVVCTIHQP----------SIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 1031 ~~~i~~~l~~~~~~g~tvi~~tH~~----------~~~~~~~~D~v~~l~~g 1072 (1106)
+..+.++++.+++.|.|||+|+|++ . .+...||++++|++|
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~-~l~~~~D~vi~L~~g 443 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDS-HISTITDTIILLQYV 443 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSS-CCTTTCSEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccCcccccCc-ccceeeeEEEEEEEE
Confidence 9999999999988899999999998 4 355679999999864
No 106
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.96 E-value=3.8e-29 Score=313.93 Aligned_cols=194 Identities=21% Similarity=0.272 Sum_probs=155.9
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+...|+++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+| |.| +|.+.
T Consensus 435 ~L~~~~ls~~yg-------------~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~ 491 (986)
T 2iw3_A 435 DLCNCEFSLAYG-------------AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPT 491 (986)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCC
T ss_pred eeEEeeEEEEEC-------------CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCcc
Confidence 455667777653 4579999999999999999999999999999999995 111 34432
Q ss_pred ChhcccceEEEEccCC-CCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHH
Q 001291 923 KQETFARISGYCEQND-IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVNGLSTEQ 1000 (1106)
Q Consensus 923 ~~~~~~~~~g~v~q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~~g~~~LS~Gq 1000 (1106)
.. ...++|++|+. ...+.+|+.|++.+ ... .. ++.++++++.+++. +..++.+ .+|||||
T Consensus 492 ~~---~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~-----~~LSGGq 553 (986)
T 2iw3_A 492 QE---ECRTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPI-----SALSGGW 553 (986)
T ss_dssp TT---TSCEEETTCCCCCCCTTSBHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBG-----GGCCHHH
T ss_pred cc---ceeEEEEcccccccccCCcHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCc-----ccCCHHH
Confidence 21 12368999875 56678999999975 111 11 45678999999995 5666664 3699999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEE-EEe
Q 001291 1001 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREV-YVG 1079 (1106)
Q Consensus 1001 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~-~~G 1079 (1106)
|||++|||||+.+|+||||||||+|||+.++..+++.|++ .|+|||++|||++ .+...||++++|++ |+++ +.|
T Consensus 554 kQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~-G~iv~~~G 628 (986)
T 2iw3_A 554 KMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEG-LKLRKYKG 628 (986)
T ss_dssp HHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEES
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEEC-CeeecCCC
Confidence 9999999999999999999999999999999999999987 5899999999987 47788999999985 6775 677
Q ss_pred cCC
Q 001291 1080 PLG 1082 (1106)
Q Consensus 1080 ~~~ 1082 (1106)
+..
T Consensus 629 ~~~ 631 (986)
T 2iw3_A 629 NFT 631 (986)
T ss_dssp CHH
T ss_pred CHH
Confidence 653
No 107
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.96 E-value=1.5e-29 Score=315.31 Aligned_cols=205 Identities=22% Similarity=0.265 Sum_probs=133.6
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHH---------------------HhhhCCCCCc--ee---EEEEEEcCccCC
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLM---------------------DVLAGRKTGG--YI---TGDIRISGYPKK 923 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl---------------------~~l~g~~~~~--~~---~G~i~i~g~~~~ 923 (1106)
.+|+||||+|++||++||+||||||||||+ +++.|...++ .+ .+.|.++|.+..
T Consensus 32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~ 111 (670)
T 3ux8_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTS 111 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC--
T ss_pred cceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhh
Confidence 489999999999999999999999999997 6666543321 12 346777776543
Q ss_pred hhcccceEEEEccCCCC-------------------CCCCCHHHHHHHhhhhcCCCCCChHHHH------HHHHHHHHHc
Q 001291 924 QETFARISGYCEQNDIH-------------------SPFVTVYESLFYSAWLRLPPEVNSETRK------MFIEEVMELV 978 (1106)
Q Consensus 924 ~~~~~~~~g~v~q~~~~-------------------~~~~tv~e~l~~~~~~~~~~~~~~~~~~------~~v~~~l~~~ 978 (1106)
.. .++.+|+++|...+ ++.+||.||+.+...+.... ......+ ....++++.+
T Consensus 112 ~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 112 RN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTE-KEAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp ----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHHT
T ss_pred cc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccch-hhhHHHHHHHHHHHHHHHHHHHc
Confidence 21 12334555553322 34679999987743222111 0000000 0112358888
Q ss_pred CCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCc
Q 001291 979 ELKPL-RQSLVGLPGVNGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1055 (1106)
Q Consensus 979 ~l~~~-~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~--illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~ 1055 (1106)
+|.+. .++.+ .+|||||||||+|||||+.+|+ ||||||||+|||+.++..++++|++++++|.|||+||||+
T Consensus 190 gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 190 GLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp TCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred CCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 98764 45553 4699999999999999999998 9999999999999999999999999988899999999998
Q ss_pred cHHHHHhcCeEEEEe-----cCCEEEEEecCCC
Q 001291 1056 SIDIFEAFDELFLMK-----RGGREVYVGPLGH 1083 (1106)
Q Consensus 1056 ~~~~~~~~D~v~~l~-----~gG~~~~~G~~~~ 1083 (1106)
+ ....||++++|. ++|++++.|++.+
T Consensus 265 ~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~ 295 (670)
T 3ux8_A 265 D--TMLAADYLIDIGPGAGIHGGEVVAAGTPEE 295 (670)
T ss_dssp H--HHHHCSEEEEECSSSGGGCCSEEEEECHHH
T ss_pred H--HHhhCCEEEEecccccccCCEEEEecCHHH
Confidence 6 356799999993 3689999998753
No 108
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.92 E-value=3.6e-25 Score=275.53 Aligned_cols=107 Identities=25% Similarity=0.291 Sum_probs=92.9
Q ss_pred HHHHHHHcCCcc-cccccccCccCCCCChhhhhHHHHHHHHhcCC---ccceeecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 001291 299 TDYYLKVLGLDI-CADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA---LALFMDEISTGLDSSTTFQIVNCFKQNIHINS 374 (1106)
Q Consensus 299 ~~~~l~~lgL~~-~~dt~vg~~~~rgLSGGqkqRvsia~al~~~p---~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~ 374 (1106)
...+++.+||.. ..+..+++ |||||||||+||++|+.+| ++|||||||+|||+.+...+++.|+++.. .
T Consensus 825 ~~~~L~~~gL~~~~l~~~~~~-----LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~- 897 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLGQPATT-----LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-N- 897 (972)
T ss_dssp HHHHHHHTTCSSSBTTCCGGG-----CCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-T-
T ss_pred HHHHHHHcCCCcccccCchhh-----CCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C-
Confidence 356899999987 66776665 9999999999999999865 99999999999999999999999998864 3
Q ss_pred CeEEEEEecChhHHHhhcCeEEEe------cCCeEEEEcCHHHHH
Q 001291 375 GTAVISLLQPAPETYNLFDDIILL------SDGQIVYQGPRELVL 413 (1106)
Q Consensus 375 ~t~ii~i~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~ 413 (1106)
+.+|++++|+..++ ..||+|++| ++|++++.|+++++.
T Consensus 898 G~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 898 GDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp TCEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred CCEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 45666688888876 689999999 789999999999885
No 109
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.92 E-value=1.6e-24 Score=272.37 Aligned_cols=109 Identities=22% Similarity=0.263 Sum_probs=90.9
Q ss_pred HHHHHHHHcCCccc-ccccccCccCCCCChhhhhHHHHHHHHhcCC---ccceeecCCCCCCHHHHHHHHHHHHHHHHhc
Q 001291 298 ITDYYLKVLGLDIC-ADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA---LALFMDEISTGLDSSTTFQIVNCFKQNIHIN 373 (1106)
Q Consensus 298 ~~~~~l~~lgL~~~-~dt~vg~~~~rgLSGGqkqRvsia~al~~~p---~vllLDEptsgLD~~~~~~i~~~l~~~~~~~ 373 (1106)
.+..+|+.+||... .+..+ ..|||||||||+||++|+.+| ++|||||||+|||+.+...+++.|+++.. .
T Consensus 784 ~~~~~L~~vGL~~~~lgq~~-----~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~ 857 (916)
T 3pih_A 784 RTLQVLHDVGLGYVKLGQPA-----TTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-R 857 (916)
T ss_dssp HHHHHHHHTTGGGSBTTCCS-----TTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCchhhccCCc-----cCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-c
Confidence 45678999999753 23333 359999999999999999865 79999999999999999999999998864 3
Q ss_pred CCeEEEEEecChhHHHhhcCeEEEe------cCCeEEEEcCHHHHHH
Q 001291 374 SGTAVISLLQPAPETYNLFDDIILL------SDGQIVYQGPRELVLE 414 (1106)
Q Consensus 374 ~~t~ii~i~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~~ 414 (1106)
+ .+|++++|+...+ ..||+|++| ++|+|+++|+++++.+
T Consensus 858 G-~TVIvI~HdL~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 858 G-NTVIVIEHNLDVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp T-CEEEEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred C-CEEEEEeCCHHHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 4 4566688888766 569999999 8999999999999863
No 110
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.92 E-value=1.1e-24 Score=272.32 Aligned_cols=108 Identities=25% Similarity=0.266 Sum_probs=93.1
Q ss_pred HHHHHHHcCCcc-cccccccCccCCCCChhhhhHHHHHHHHhcCC---ccceeecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 001291 299 TDYYLKVLGLDI-CADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA---LALFMDEISTGLDSSTTFQIVNCFKQNIHINS 374 (1106)
Q Consensus 299 ~~~~l~~lgL~~-~~dt~vg~~~~rgLSGGqkqRvsia~al~~~p---~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~ 374 (1106)
...+++.+||.. ..+..++. |||||||||+||++|+.+| ++|||||||+|||+.+...+++.|++++. .
T Consensus 843 ~~~~L~~lgL~~~~l~~~~~~-----LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~- 915 (993)
T 2ygr_A 843 YLRTLVDVGLGYVRLGQPAPT-----LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVD-K- 915 (993)
T ss_dssp HHHHHHHTTGGGSBTTCCGGG-----SCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-
T ss_pred HHHHHHHcCCCcccccCcccc-----CCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C-
Confidence 456899999987 56666655 9999999999999999864 99999999999999999999999998764 3
Q ss_pred CeEEEEEecChhHHHhhcCeEEEe------cCCeEEEEcCHHHHHH
Q 001291 375 GTAVISLLQPAPETYNLFDDIILL------SDGQIVYQGPRELVLE 414 (1106)
Q Consensus 375 ~t~ii~i~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~~ 414 (1106)
+.+|++++|+..++ ..||+|++| ++|++++.|+++++..
T Consensus 916 G~TVIvisHdl~~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 916 GNTVIVIEHNLDVI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp TCEEEEECCCHHHH-TTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred CCEEEEEcCCHHHH-HhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 45666688888876 789999999 7999999999998864
No 111
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.92 E-value=7.9e-25 Score=272.89 Aligned_cols=108 Identities=19% Similarity=0.261 Sum_probs=94.3
Q ss_pred HHHHHHHHcCCcc-cccccccCccCCCCChhhhhHHHHHHHHhcC---CccceeecCCCCCCHHHHHHHHHHHHHHHHhc
Q 001291 298 ITDYYLKVLGLDI-CADTMVGDEMRRGVSGGQKKRVTTGEMMVGP---ALALFMDEISTGLDSSTTFQIVNCFKQNIHIN 373 (1106)
Q Consensus 298 ~~~~~l~~lgL~~-~~dt~vg~~~~rgLSGGqkqRvsia~al~~~---p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~ 373 (1106)
.+..+|+.+||.. ..+..++. |||||||||+||++|+.+ |++|||||||+|||..+...+.+.|++++. .
T Consensus 709 ~~~~~L~~~gL~~~~l~~~~~~-----LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~ 782 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQPATE-----LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-A 782 (842)
T ss_dssp HHHHHHHHTTCTTSBTTCCGGG-----CCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCCcccccCCccc-----CCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C
Confidence 4678899999987 34666654 999999999999999996 799999999999999999999999998864 3
Q ss_pred CCeEEEEEecChhHHHhhcCeEEEe------cCCeEEEEcCHHHHH
Q 001291 374 SGTAVISLLQPAPETYNLFDDIILL------SDGQIVYQGPRELVL 413 (1106)
Q Consensus 374 ~~t~ii~i~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~ 413 (1106)
+.+|++++|+.+++ ..||+|++| ++|++++.|+++++.
T Consensus 783 -G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 783 -GNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp -TCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred -CCEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 55666788999888 889999999 799999999999874
No 112
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.2e-27 Score=280.12 Aligned_cols=197 Identities=14% Similarity=0.053 Sum_probs=150.1
Q ss_pred eeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEE-E-EEEcCccCChhcccceEEEEccCCC---CCCCCCHHH
Q 001291 874 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-D-IRISGYPKKQETFARISGYCEQNDI---HSPFVTVYE 948 (1106)
Q Consensus 874 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G-~-i~i~g~~~~~~~~~~~~g~v~q~~~---~~~~~tv~e 948 (1106)
++|+++++|++++|+||||||||||+++|+|... +..| . |.++|. .++.++|++|+.. +.+.+|++|
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~e 201 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQL 201 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTTC
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC------ccCCeeeeccchhhcccccccchhh
Confidence 7999999999999999999999999999999765 3478 8 999983 2456899999874 345579999
Q ss_pred HHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH--HhcCCCe----EEEeC-
Q 001291 949 SLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVE--LVANPSI----IFMDE- 1021 (1106)
Q Consensus 949 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~a--L~~~p~i----llLDE- 1021 (1106)
|+ |+....... .. ++.+.++++.+++.+..+ ..+|||||||||+|||| |+.+|++ |||||
T Consensus 202 ni-~~~~~~~~~--~~---~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEp 268 (460)
T 2npi_A 202 PT-WGQSLTSGA--TL---LHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTP 268 (460)
T ss_dssp TT-CSCBCBSSC--CS---SCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECC
T ss_pred hh-cccccccCc--ch---HHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCC
Confidence 88 654321111 00 112456677788876654 23699999999999999 9999999 99999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCcc--H---HHHHhcCe-----EEEEecCCEEEEEecCCCc----hhH
Q 001291 1022 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS--I---DIFEAFDE-----LFLMKRGGREVYVGPLGHH----SCH 1087 (1106)
Q Consensus 1022 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~--~---~~~~~~D~-----v~~l~~gG~~~~~G~~~~~----~~~ 1087 (1106)
||++||+. ...+.++++++ |.|+|+++|+.+ . ++...||+ +++|++.|+++ .|+.... ...
T Consensus 269 Pts~LD~~-~~~l~~l~~~~---~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~~~ 343 (460)
T 2npi_A 269 SISQLDEN-LAELHHIIEKL---NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRSLQRTS 343 (460)
T ss_dssp CGGGSCSS-CHHHHHHHHHT---TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHHHHHHH
T ss_pred cccccChh-HHHHHHHHHHh---CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhhhhHHH
Confidence 99999999 66666666553 789999999987 3 34578999 99998345677 7765432 234
Q ss_pred HHHHHHhCC
Q 001291 1088 LISYFEVCP 1096 (1106)
Q Consensus 1088 ~~~yf~~~~ 1096 (1106)
+.+||...+
T Consensus 344 i~~~f~g~~ 352 (460)
T 2npi_A 344 IREYFYGSL 352 (460)
T ss_dssp HHHHHHCCT
T ss_pred HHHHhCCCC
Confidence 678987643
No 113
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.91 E-value=2.2e-24 Score=254.14 Aligned_cols=218 Identities=18% Similarity=0.161 Sum_probs=144.5
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCC------------------------------------ceeEE
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG------------------------------------GYITG 913 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~------------------------------------~~~~G 913 (1106)
.++++++++|.+| +++|+|+||||||||+++|.+...+ ....|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3689999999999 9999999999999999999653211 01157
Q ss_pred EEEEcCccCChhc---cc-ceEEEEccCCCCCCCCCHHHHHHHhhhhc-----------------------CCCCCC---
Q 001291 914 DIRISGYPKKQET---FA-RISGYCEQNDIHSPFVTVYESLFYSAWLR-----------------------LPPEVN--- 963 (1106)
Q Consensus 914 ~i~i~g~~~~~~~---~~-~~~g~v~q~~~~~~~~tv~e~l~~~~~~~-----------------------~~~~~~--- 963 (1106)
.+++||.+..... .. ..+++++|++.+.. .+..+...|--... ......
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l-~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL-LSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTT-SSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccc-cCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 7999998875422 22 34799999876653 24444333211100 000000
Q ss_pred -------------------------------hHHHHHHHHHHHHHcCCCccc----------------cc---ccCCC--
Q 001291 964 -------------------------------SETRKMFIEEVMELVELKPLR----------------QS---LVGLP-- 991 (1106)
Q Consensus 964 -------------------------------~~~~~~~v~~~l~~~~l~~~~----------------~~---~~~~~-- 991 (1106)
.+.....+.+.++.+++.... +. .....
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 000112344455555554310 00 01000
Q ss_pred ----CCCC-CCHHHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcC
Q 001291 992 ----GVNG-LSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1064 (1106)
Q Consensus 992 ----g~~~-LS~Gqrqrl~iA~aL~~~p--~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D 1064 (1106)
.... ||||||||++||++|+.+| ++|||||||+|||+.+...|.+.|+++. +|+|||+|||+++ +...||
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~--~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQ--IAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHH--HHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHH--HHhhcC
Confidence 0111 7999999999999999999 9999999999999999999999999997 5899999999985 567899
Q ss_pred eEEEE----ecCCEEEEEe-cCCCc--hhHHHHHHH
Q 001291 1065 ELFLM----KRGGREVYVG-PLGHH--SCHLISYFE 1093 (1106)
Q Consensus 1065 ~v~~l----~~gG~~~~~G-~~~~~--~~~~~~yf~ 1093 (1106)
++++| .+ |+++... .+... ..++..+..
T Consensus 364 ~i~~l~k~~~~-G~~~~~~~~l~~~~~~~ei~~~~~ 398 (415)
T 4aby_A 364 HHYKVEKQVED-GRTVSHVRLLTGDERLEEIARMLS 398 (415)
T ss_dssp EEEEEEEEEET-TEEEEEEEECCSHHHHHHHHHHHH
T ss_pred eEEEEEEeccC-CceEEEEEECCchhhHHHHHHHhc
Confidence 99999 64 6665443 33221 244555554
No 114
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1e-26 Score=274.44 Aligned_cols=186 Identities=10% Similarity=0.040 Sum_probs=142.4
Q ss_pred eceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCcee-E-EEECCccCCCCCccceEEEEcCCCC---CCCCCCH
Q 001291 169 KDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSG-R-VTYNGHNMDEFVPERTAAYISQHDN---HIGEMTV 243 (1106)
Q Consensus 169 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G-~-V~~~G~~~~~~~~~~~~~yv~Q~d~---~~~~lTV 243 (1106)
.++|+.+++|++++|+||||||||||+++|+|.+.|+ +| + |.++|. +++.++|++|+.. +...+||
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 3799999999999999999999999999999999887 89 9 999982 3567999999873 4566899
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
+||+ |+..... +.. . . ..+..+++.+||+...+ + ..
T Consensus 200 ~eni-~~~~~~~-~~~--------~---~------------------------~~~~~ll~~~gl~~~~~--~-----~~ 235 (460)
T 2npi_A 200 QLPT-WGQSLTS-GAT--------L---L------------------------HNKQPMVKNFGLERINE--N-----KD 235 (460)
T ss_dssp TCTT-CSCBCBS-SCC--------S---S------------------------CCBCCEECCCCSSSGGG--C-----HH
T ss_pred hhhh-ccccccc-Ccc--------h---H------------------------HHHHHHHHHhCCCcccc--h-----hh
Confidence 9998 7543210 000 0 0 00122456678877665 3 34
Q ss_pred CChhhhhHHHHHHH--HhcCCcc----ceeec-CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChh-----HHHhh
Q 001291 324 VSGGQKKRVTTGEM--MVGPALA----LFMDE-ISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAP-----ETYNL 391 (1106)
Q Consensus 324 LSGGqkqRvsia~a--l~~~p~v----llLDE-ptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~-----~~~~~ 391 (1106)
|||||||||++|++ |+.+|++ ||||| ||++||+. ...+.+.+++ .+.++|+++|++.+ ++..+
T Consensus 236 LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~----~~~tviiVth~~~~~l~~~~~~~~ 310 (460)
T 2npi_A 236 LYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK----LNVNIMLVLCSETDPLWEKVKKTF 310 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH----TTCCEEEEECCSSCTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH----hCCCEEEEEccCchhhhHHHHHHh
Confidence 99999999999999 9999999 99999 99999999 4445455543 35565555544431 66789
Q ss_pred cCe-----EEEec-CCeEEEEcCHHHHH
Q 001291 392 FDD-----IILLS-DGQIVYQGPRELVL 413 (1106)
Q Consensus 392 ~D~-----vilL~-~G~iv~~G~~~~~~ 413 (1106)
+|+ |++|+ +|+++ .|+++++.
T Consensus 311 ~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 311 GPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp HHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred cccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 999 99999 99999 99987764
No 115
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.89 E-value=3.2e-23 Score=244.23 Aligned_cols=237 Identities=15% Similarity=0.131 Sum_probs=147.6
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCC-----------------------------------CCc
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS-----------------------------------LKV 208 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~-----------------------------------~~~ 208 (1106)
+..+|+++|+.+.+| +++|+|||||||||||++|.+.+.+. ..-
T Consensus 47 nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~ 125 (415)
T 4aby_A 47 NLATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAG 125 (415)
T ss_dssp EETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTS
T ss_pred cccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCC
Confidence 346899999999999 99999999999999999997665420 011
Q ss_pred eeEEEECCccCCCCCc----cceEEEEcCCCCCCCCCCHHHHHHHHHHhcCC-----CcchhhhhHhhHHHHhcCCCCCC
Q 001291 209 SGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGEMTVRETLAFAARCQGV-----GTRYEMLTELSRREKAAGIKPDP 279 (1106)
Q Consensus 209 ~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~-----~~~~~~~~~~~~~ek~~~~~p~~ 279 (1106)
.|++.+||.+++.... ...+++++|++.++. .+..+...|--..... ...+.....+.+..... .....
T Consensus 126 ~~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l-~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l-~~~~~ 203 (415)
T 4aby_A 126 RGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL-LSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERL-QASES 203 (415)
T ss_dssp CEEEEETTEEECHHHHHHHHTTTEEEETTTCTTTT-SSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred ceEEEECCEECCHHHHHHHHhhceEEecCcccccc-cCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHH-Hhhhh
Confidence 6889999988763221 234899999876544 3666665553221100 00000000000000000 00000
Q ss_pred -----------ChHHHHHhh-----------cchhhhHhHHHHHHHHHcCCcccc----------------cc---cccC
Q 001291 280 -----------DIDVFMKAA-----------STEGEEANVITDYYLKVLGLDICA----------------DT---MVGD 318 (1106)
Q Consensus 280 -----------d~~~~~~~~-----------~~~~~~~~~~~~~~l~~lgL~~~~----------------dt---~vg~ 318 (1106)
.++...+.. ..........++..++.++++... +. .+..
T Consensus 204 ~~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 283 (415)
T 4aby_A 204 SKHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSA 283 (415)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEES
T ss_pred hhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEc
Confidence 000000000 000112234556667777765411 00 1111
Q ss_pred ------ccCCC-CChhhhhHHHHHHHHhcCC--ccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHH
Q 001291 319 ------EMRRG-VSGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETY 389 (1106)
Q Consensus 319 ------~~~rg-LSGGqkqRvsia~al~~~p--~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~ 389 (1106)
...+. |||||||||+||++|+.+| ++|||||||+|||+.+...+.+.|+++. .+ .+|++++|.. ++.
T Consensus 284 ~~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~-~~vi~itH~~-~~~ 359 (415)
T 4aby_A 284 NPGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DT-RQVLVVTHLA-QIA 359 (415)
T ss_dssp SSSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TT-SEEEEECSCH-HHH
T ss_pred CCCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CC-CEEEEEeCcH-HHH
Confidence 01111 6999999999999999999 9999999999999999999999999875 24 4455567775 567
Q ss_pred hhcCeEEEe----cCCeEEEEc
Q 001291 390 NLFDDIILL----SDGQIVYQG 407 (1106)
Q Consensus 390 ~~~D~vilL----~~G~iv~~G 407 (1106)
+.||++++| .+|+++...
T Consensus 360 ~~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 360 ARAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp TTCSEEEEEEEEEETTEEEEEE
T ss_pred hhcCeEEEEEEeccCCceEEEE
Confidence 899999999 999987653
No 116
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.88 E-value=2.4e-26 Score=243.63 Aligned_cols=172 Identities=17% Similarity=0.125 Sum_probs=108.6
Q ss_pred ceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHH
Q 001291 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVY 947 (1106)
Q Consensus 868 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~ 947 (1106)
++.+|+|| ++|++++|+||||||||||+++|+|. .+ .+|+|............++.+||++|++ +
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p--~~G~I~~~~~~~~~~~~~~~ig~v~q~~--------~ 76 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL--QSKQVSRIILTRPAVEAGEKLGFLPGTL--------N 76 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HH--HTTSCSEEEEEECSCCTTCCCCSSCC-----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CC--cCCeeeeEEecCCchhhhcceEEecCCH--------H
Confidence 34688885 89999999999999999999999997 52 2444421101001112356789999976 4
Q ss_pred HHH-HHhhhh--cCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC
Q 001291 948 ESL-FYSAWL--RLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1024 (1106)
Q Consensus 948 e~l-~~~~~~--~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTs 1024 (1106)
||+ .+.... ....... ...++++++. + | |||||++|||||+.+|++|||||||+
T Consensus 77 enl~~~~~~~~~~~~~~~~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDEPts 133 (208)
T 3b85_A 77 EKIDPYLRPLHDALRDMVE----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDEAQN 133 (208)
T ss_dssp ---CTTTHHHHHHHTTTSC----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECSGGG
T ss_pred HHHHHHHHHHHHHHHHhcc----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 454 231100 0000001 1224455543 2 3 99999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCCCchhHHHHHHHhCCCCcc
Q 001291 1025 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFEVCPDAHF 1100 (1106)
Q Consensus 1025 gLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~~~~~~~~yf~~~~g~~~ 1100 (1106)
| ++..+++.|+++ ++|+||| +|||++. +++....++| ...+++.|...|.+.-
T Consensus 134 ~----~~~~l~~~l~~l-~~g~tii-vtHd~~~-----~~~~~~~~~G------------~~~~~~~~~~~~~~~~ 186 (208)
T 3b85_A 134 T----TPAQMKMFLTRL-GFGSKMV-VTGDITQ-----VDLPGGQKSG------------LRLVRHILRGVDDVHF 186 (208)
T ss_dssp C----CHHHHHHHHTTB-CTTCEEE-EEEC-----------------C------------CHHHHHHTTTCTTEEE
T ss_pred c----cHHHHHHHHHHh-cCCCEEE-EECCHHH-----HhCcCCCCCc------------HHHHHHHhcCCCCccE
Confidence 9 889999999988 6689999 9999752 2333333332 3578888887776654
No 117
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.87 E-value=1.5e-23 Score=215.91 Aligned_cols=150 Identities=15% Similarity=0.174 Sum_probs=103.8
Q ss_pred eeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCC-CCCHHHHHHH
Q 001291 874 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSP-FVTVYESLFY 952 (1106)
Q Consensus 874 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~-~~tv~e~l~~ 952 (1106)
||||++++||+++|+||||||||||++++.+-.. .+++ .. ..|+++|++.... .-++++.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--------~~~~-----d~---~~g~~~~~~~~~~~~~~~~~~~~- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--------VISS-----DF---CRGLMSDDENDQTVTGAAFDVLH- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--------EEEH-----HH---HHHHHCSSTTCGGGHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--------EEcc-----HH---HHHHhcCcccchhhHHHHHHHHH-
Confidence 6899999999999999999999999999764211 1111 11 1256666543210 001111111
Q ss_pred hhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH---
Q 001291 953 SAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR--- 1029 (1106)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~--- 1029 (1106)
. ..+.....+.....+.. ...|+|||||++||+|++.+|++|+|||||++||+.
T Consensus 64 ----------------~-~~~~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 64 ----------------Y-IVSKRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp ----------------H-HHHHHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred ----------------H-HHHHHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 1 11122234444444432 247999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCe
Q 001291 1030 -------------AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1065 (1106)
Q Consensus 1030 -------------~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~ 1065 (1106)
....+++.|+++.++|.|+|++|||++ ..+.+++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~--~~~~~~~ 167 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE--EVEEVVF 167 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH--HHHHEEE
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH--Hhhhhhh
Confidence 668999999888777999999999985 2344444
No 118
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.87 E-value=6.9e-22 Score=227.89 Aligned_cols=81 Identities=23% Similarity=0.362 Sum_probs=73.9
Q ss_pred CCCCHHHHHHHHHHHHHh------cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEE
Q 001291 994 NGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 1067 (1106)
Q Consensus 994 ~~LS~Gqrqrl~iA~aL~------~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~ 1067 (1106)
.+||||||||++||+||+ .+|++|||||||+|||+.+...+++.|+++.+.|+|||+||||++ ..+.||+++
T Consensus 278 ~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~~~ 355 (365)
T 3qf7_A 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDRKL 355 (365)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSCEE
T ss_pred hhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCEEE
Confidence 469999999999999999 799999999999999999999999999999888999999999986 467899999
Q ss_pred EEecCCEEEE
Q 001291 1068 LMKRGGREVY 1077 (1106)
Q Consensus 1068 ~l~~gG~~~~ 1077 (1106)
+|++ |+++.
T Consensus 356 ~l~~-G~i~~ 364 (365)
T 3qf7_A 356 RITG-GVVVN 364 (365)
T ss_dssp EEET-TEEC-
T ss_pred EEEC-CEEEe
Confidence 9985 67754
No 119
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.86 E-value=6e-22 Score=225.06 Aligned_cols=86 Identities=20% Similarity=0.211 Sum_probs=74.8
Q ss_pred CCCCHHHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeE--E
Q 001291 994 NGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL--F 1067 (1106)
Q Consensus 994 ~~LS~Gqrqrl~iA~aL~----~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v--~ 1067 (1106)
..||+|||||++||++|+ .+|++|+|||||++||+.....+.+.|+++. +|.|||+|||+++ +.+.||++ +
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~v 294 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHGV 294 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEEE
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEEE
Confidence 469999999999999997 6889999999999999999999999999984 5899999999975 56889987 8
Q ss_pred EEecCCEEEEEecCC
Q 001291 1068 LMKRGGREVYVGPLG 1082 (1106)
Q Consensus 1068 ~l~~gG~~~~~G~~~ 1082 (1106)
+|.+|...+....+.
T Consensus 295 ~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 295 TMVNGVSAIVPVEVE 309 (322)
T ss_dssp EESSSCEEEEECCC-
T ss_pred EEeCCEEEEEEEEcc
Confidence 888877777666554
No 120
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.84 E-value=1.2e-20 Score=217.63 Aligned_cols=81 Identities=23% Similarity=0.361 Sum_probs=70.6
Q ss_pred CCCChhhhhHHHHHHHHh------cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001291 322 RGVSGGQKKRVTTGEMMV------GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~------~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 395 (1106)
..|||||||||+||+||+ .+|++|||||||+|||+.+...+++.|+++.. . +.+|++++|+... ...+|+|
T Consensus 278 ~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~-g~tvi~itH~~~~-~~~~d~~ 354 (365)
T 3qf7_A 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-L-NKVIVFITHDREF-SEAFDRK 354 (365)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-S-SSEEEEEESCHHH-HTTCSCE
T ss_pred hhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-C-CCEEEEEecchHH-HHhCCEE
Confidence 459999999999999999 79999999999999999999999999998753 3 4455667788766 7889999
Q ss_pred EEecCCeEEE
Q 001291 396 ILLSDGQIVY 405 (1106)
Q Consensus 396 ilL~~G~iv~ 405 (1106)
++|++|+++.
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999974
No 121
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.84 E-value=1.3e-23 Score=222.60 Aligned_cols=159 Identities=14% Similarity=0.126 Sum_probs=96.9
Q ss_pred ccceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCC
Q 001291 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1106)
.++.+|+|+ ++|++++|+|||||||||||++|+|. +|+ +|+|............++.++|++|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~~~~~~~~~~~~~~ig~v~q~~------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSRIILTRPAVEAGEKLGFLPGTL------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSEEEEEECSCCTTCCCCSSCC---------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeeeEEecCCchhhhcceEEecCCH-------
Confidence 445789996 89999999999999999999999999 886 777732111111112246799999975
Q ss_pred HHHHH-HHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccC
Q 001291 243 VRETL-AFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1106)
Q Consensus 243 V~E~l-~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
+||+ .|..... . .+. .. .+ ...++.+++. |
T Consensus 76 -~enl~~~~~~~~------~---~~~------~~-~~-----------------~~~~~~~l~~-g-------------- 106 (208)
T 3b85_A 76 -NEKIDPYLRPLH------D---ALR------DM-VE-----------------PEVIPKLMEA-G-------------- 106 (208)
T ss_dssp -----CTTTHHHH------H---HHT------TT-SC-----------------TTHHHHHHHT-T--------------
T ss_pred -HHHHHHHHHHHH------H---HHH------Hh-cc-----------------HHHHHHHHHh-C--------------
Confidence 5666 3421100 0 000 00 00 0123333432 2
Q ss_pred CCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCC
Q 001291 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 401 (1106)
+ ||||||+|||||+.+|++|||||||+| ++..+.+.|+++ . . +++|+ ++|+..++ +++...++|
T Consensus 107 --l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~-~-g~tii-vtHd~~~~----~~~~~~~~G 170 (208)
T 3b85_A 107 --I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G-F-GSKMV-VTGDITQV----DLPGGQKSG 170 (208)
T ss_dssp --S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C-T-TCEEE-EEEC----------------C
T ss_pred --C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c-C-CCEEE-EECCHHHH----hCcCCCCCc
Confidence 3 999999999999999999999999999 888888988876 2 3 45566 77876654 444334444
No 122
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.82 E-value=6.3e-23 Score=237.86 Aligned_cols=172 Identities=14% Similarity=0.128 Sum_probs=133.3
Q ss_pred ceeeeceeEEEeCce--------------------EEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc
Q 001291 165 LTILKDVSGIVKPGR--------------------LTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP 224 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~--------------------~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~ 224 (1106)
..+|+|||+.+++|+ +++|+||||||||||+|+|+|.++|+ +|+|.++|.+.+
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t---- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT---- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC--------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc----
Confidence 468999999999999 99999999999999999999999998 999999987653
Q ss_pred cceEEEEcCCCCCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHH
Q 001291 225 ERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLK 304 (1106)
Q Consensus 225 ~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~ 304 (1106)
+ .+|++|++ .++.+|+.||+.++.. +..++.+++
T Consensus 109 -~-~~~v~q~~-~~~~ltv~D~~g~~~~-------------------------------------------~~~~~~~L~ 142 (413)
T 1tq4_A 109 -M-ERHPYKHP-NIPNVVFWDLPGIGST-------------------------------------------NFPPDTYLE 142 (413)
T ss_dssp -C-CCEEEECS-SCTTEEEEECCCGGGS-------------------------------------------SCCHHHHHH
T ss_pred -e-eEEecccc-ccCCeeehHhhcccch-------------------------------------------HHHHHHHHH
Confidence 1 27899985 5778899888654310 001456788
Q ss_pred HcCCcccccccccCccCCCCChh--hhhHHHHHHHHhc----------CCccceeecCCCCCCHHHHHHHHHHHHHHHH-
Q 001291 305 VLGLDICADTMVGDEMRRGVSGG--QKKRVTTGEMMVG----------PALALFMDEISTGLDSSTTFQIVNCFKQNIH- 371 (1106)
Q Consensus 305 ~lgL~~~~dt~vg~~~~rgLSGG--qkqRvsia~al~~----------~p~vllLDEptsgLD~~~~~~i~~~l~~~~~- 371 (1106)
.++|.+... .+ . |||| ||||+.||++|.. +|++++|||||+|||+.++.++.+.++++..
T Consensus 143 ~~~L~~~~~-~~-----~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~ 215 (413)
T 1tq4_A 143 KMKFYEYDF-FI-----I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVN 215 (413)
T ss_dssp HTTGGGCSE-EE-----E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCccCC-eE-----E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 888876532 22 1 8999 9999999999999 9999999999999999999999999988752
Q ss_pred ---hc---CCeEEEEEecChhH--HHhhcCeEE
Q 001291 372 ---IN---SGTAVISLLQPAPE--TYNLFDDII 396 (1106)
Q Consensus 372 ---~~---~~t~ii~i~q~~~~--~~~~~D~vi 396 (1106)
.. ..+++++.+|...+ +.+++|+|.
T Consensus 216 ~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 216 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 21 23555555665555 666666663
No 123
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.82 E-value=3.7e-23 Score=239.75 Aligned_cols=170 Identities=15% Similarity=0.173 Sum_probs=134.2
Q ss_pred EEeeeeeeeeeCCe--------------------EEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccc
Q 001291 870 VLLNGVSGAFRPGV--------------------LTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFAR 929 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge--------------------~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~ 929 (1106)
.+|++||+++++|+ ++||+||||||||||+|+|+|...+ .+|.|.++|.+.. +
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p--~~GsI~~~g~~~t-----~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNE--EEGAAKTGVVEVT-----M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTT--STTSCCCCC---------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCc--cCceEEECCeecc-----e
Confidence 58999999999999 9999999999999999999997653 3688888886542 1
Q ss_pred eEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH--HHHHHHHH
Q 001291 930 ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE--QRKRLTIA 1007 (1106)
Q Consensus 930 ~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~G--qrqrl~iA 1007 (1106)
.+|++|++ ..+.+|+.|++.++. . +..++++++.+++.+..... .||+| ||||+.||
T Consensus 110 -~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~~~-------~lS~G~~~kqrv~la 168 (413)
T 1tq4_A 110 -ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDFFI-------IISATRFKKNDIDIA 168 (413)
T ss_dssp -CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSEEE-------EEESSCCCHHHHHHH
T ss_pred -eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCCeE-------EeCCCCccHHHHHHH
Confidence 27899975 456788888765432 0 11367889999987653332 28999 99999999
Q ss_pred HHHhc----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCC----ceEEEEecCccH-HHHHhcCeEE
Q 001291 1008 VELVA----------NPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DTG----RTVVCTIHQPSI-DIFEAFDELF 1067 (1106)
Q Consensus 1008 ~aL~~----------~p~illLDEPTsgLD~~~~~~i~~~l~~~~-----~~g----~tvi~~tH~~~~-~~~~~~D~v~ 1067 (1106)
++|+. +|++++|||||+|||+.++..+++.|+++. +.| .+|++++|+++. ++.+.+|++.
T Consensus 169 ~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 169 KAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 99999 999999999999999999999999999884 333 678899998762 2667788775
No 124
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.82 E-value=4.6e-24 Score=226.85 Aligned_cols=185 Identities=11% Similarity=0.052 Sum_probs=116.8
Q ss_pred ceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHH
Q 001291 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVY 947 (1106)
Q Consensus 868 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~ 947 (1106)
...+++| .+|++|++++|+||||||||||+++|+|.... +.+.+.+.+.+... ..++.++|++|++..++.+|+.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~--i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN--LHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTT--CEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc--eEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 3457888 69999999999999999999999999996542 23333333332221 1235689999987766666776
Q ss_pred HHHHHhhhhcCC---CCCChHHHHHHHHHH------HHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 001291 948 ESLFYSAWLRLP---PEVNSETRKMFIEEV------MELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 1018 (1106)
Q Consensus 948 e~l~~~~~~~~~---~~~~~~~~~~~v~~~------l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~ill 1018 (1106)
+++........+ .....+..++.+++. ++.+++....+... ..|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----EAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----TSEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----CcEE-----------EEEECCCHHH
Confidence 665322111100 011223334444444 44555544444442 2466 8999999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEecCCE
Q 001291 1019 MDEPTSGL----DARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1106)
Q Consensus 1019 LDEPTsgL----D~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~ 1074 (1106)
|||||+|+ |+..++.++++++++.+ .|.|||++|||++ ++...||++++|.+.|+
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~p~~ 206 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTAPGS 206 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC------
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhccCCC
Confidence 99999998 78899999999999874 5899999999998 58889999999975543
No 125
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.82 E-value=2.1e-21 Score=200.77 Aligned_cols=148 Identities=19% Similarity=0.183 Sum_probs=100.5
Q ss_pred EEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh---cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE---TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPP 960 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 960 (1106)
+++|+||||||||||+++|+|... |.++|++.... ..++.+||++|+. ++.+++ +. .+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~~~-- 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-FS-SKFF-- 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-EE-ETTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-HH-hhcC--
Confidence 689999999999999999999643 12233221110 2345689999975 222322 11 1100
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH-----HhcCCCeEEEeC--CCCCCCHHHHHH
Q 001291 961 EVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVE-----LVANPSIIFMDE--PTSGLDARAAAI 1033 (1106)
Q Consensus 961 ~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~a-----L~~~p~illLDE--PTsgLD~~~~~~ 1033 (1106)
.. .+..+.. +..||+|||||++||+| |+.+|++|+||| ||++||+.....
T Consensus 65 --~~----------------~~~~~~~-----~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 65 --TS----------------KKLVGSY-----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp --CC----------------SSEETTE-----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred --Cc----------------ccccccc-----ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 00 0122222 23599999999999996 999999999999 999999999999
Q ss_pred HHHHHHHHHhCCceEEEEec---CccHHHHHhcCeEEEEecCCEEEEEec
Q 001291 1034 VMRTVRNTVDTGRTVVCTIH---QPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1106)
Q Consensus 1034 i~~~l~~~~~~g~tvi~~tH---~~~~~~~~~~D~v~~l~~gG~~~~~G~ 1080 (1106)
+.+.+++ .+.|+|+++| +.+ .+...+|+ .+|++++..+
T Consensus 122 l~~~l~~---~~~~~i~~~H~~h~~~-~~~~i~~r-----~~~~i~~~~~ 162 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPIRDVHP-LVKEIRRL-----PGAVLIELTP 162 (178)
T ss_dssp HHHHHTC---TTSEEEEECCSSCCSH-HHHHHHTC-----TTCEEEECCT
T ss_pred HHHHHhc---CCCeEEEEEccCCCch-HHHHHHhc-----CCcEEEEecC
Confidence 9988865 4677888885 655 36667887 4577776543
No 126
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.81 E-value=1.6e-20 Score=213.33 Aligned_cols=86 Identities=20% Similarity=0.237 Sum_probs=68.0
Q ss_pred CCCChhhhhHHHHHHHHh----cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE--
Q 001291 322 RGVSGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI-- 395 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~----~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v-- 395 (1106)
..||||||||++||++|+ .+|++++|||||++||+.....+.+.++++. .+ ++++.++|. .++.+.+|++
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~-~~vi~~tH~-~~~~~~~d~~~~ 293 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KH-TQFIVITHN-KIVMEAADLLHG 293 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TT-SEEEEECCC-TTGGGGCSEEEE
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CC-CeEEEEECC-HHHHhhCceEEE
Confidence 349999999999999997 6899999999999999999999999999863 23 455556776 5688899987
Q ss_pred EEecCCeE-EEEcCHHH
Q 001291 396 ILLSDGQI-VYQGPREL 411 (1106)
Q Consensus 396 ilL~~G~i-v~~G~~~~ 411 (1106)
++|.+|.. +.....++
T Consensus 294 v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 294 VTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEESSSCEEEEECCC--
T ss_pred EEEeCCEEEEEEEEcch
Confidence 78887755 34444444
No 127
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.81 E-value=3.1e-23 Score=230.95 Aligned_cols=158 Identities=16% Similarity=0.203 Sum_probs=116.2
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
.++|+|+|+.|++|++++|+||||||||||+++|+|++ +|+| ++|++|++.++. .|++
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I---------------~~~v~q~~~lf~-~ti~ 170 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSV---------------LSFANHKSHFWL-ASLA 170 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEE---------------ECGGGTTSGGGG-GGGT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceE---------------EEEecCcccccc-ccHH
Confidence 46999999999999999999999999999999999997 5877 356778765554 5787
Q ss_pred H-HHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 245 E-TLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 245 E-~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
| ||.|.... .. .+...++.+ |++..| | ..
T Consensus 171 ~~ni~~~~~~-------------~~-----------------------------~~~~~i~~~-L~~gld---g----~~ 200 (305)
T 2v9p_A 171 DTRAALVDDA-------------TH-----------------------------ACWRYFDTY-LRNALD---G----YP 200 (305)
T ss_dssp TCSCEEEEEE-------------CH-----------------------------HHHHHHHHT-TTGGGG---T----CC
T ss_pred HHhhccCccc-------------cH-----------------------------HHHHHHHHH-hHccCC---c----cC
Confidence 6 77653100 00 011223332 444444 2 35
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
|||||||| |||++.+|+||| ||+||+.+...|.. + +|. .++...+|+| +|++|++
T Consensus 201 LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----l------------tH~-~~~~~~aD~i-vl~~G~i 255 (305)
T 2v9p_A 201 VSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----L------------HSR-VQTFRFEQPC-TDESGEQ 255 (305)
T ss_dssp EECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----G------------TTT-EEEEECCCCC-CCC---C
T ss_pred cCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----H------------hCC-HHHHHhCCEE-EEeCCEE
Confidence 99999999 999999999999 99999999877742 1 333 3345689999 9999999
Q ss_pred EEEcCHHHHHHHHHhc
Q 001291 404 VYQGPRELVLEFFESM 419 (1106)
Q Consensus 404 v~~G~~~~~~~~f~~~ 419 (1106)
++.|+++++..+|..+
T Consensus 256 v~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 256 PFNITDADWKSFFVRL 271 (305)
T ss_dssp CCCCCHHHHHHHHHHS
T ss_pred EEeCCHHHHHHHHHHH
Confidence 9999999996666543
No 128
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.80 E-value=7.5e-21 Score=195.69 Aligned_cols=147 Identities=14% Similarity=0.086 Sum_probs=95.9
Q ss_pred ceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCC-CCCCCHHHHHH
Q 001291 170 DVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNH-IGEMTVRETLA 248 (1106)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~-~~~lTV~E~l~ 248 (1106)
|||+.+++|++++|+||||||||||++++.+-. ..+++. ...++++|+... ....++.+.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~---------~~~~~d--------~~~g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPT---------EVISSD--------FCRGLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGG---------GEEEHH--------HHHHHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCC---------eEEccH--------HHHHHhcCcccchhhHHHHHHHHH
Confidence 689999999999999999999999999965421 112211 122556665311 00001111111
Q ss_pred HHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhh
Q 001291 249 FAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQ 328 (1106)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGq 328 (1106)
+ ... .....|.....|.. .-.||||
T Consensus 64 ~------------------------------------------------~~~-~~~~~g~~~~~~~~------~~~s~g~ 88 (171)
T 4gp7_A 64 Y------------------------------------------------IVS-KRLQLGKLTVVDAT------NVQESAR 88 (171)
T ss_dssp H------------------------------------------------HHH-HHHHTTCCEEEESC------CCSHHHH
T ss_pred H------------------------------------------------HHH-HHHhCCCeEEEECC------CCCHHHH
Confidence 1 001 11223443333322 1269999
Q ss_pred hhHHHHHHHHhcCCccceeecCCCCCCHH----------------HHHHHHHHHHHHHHhcCCeEEEEEecChhHHHh
Q 001291 329 KKRVTTGEMMVGPALALFMDEISTGLDSS----------------TTFQIVNCFKQNIHINSGTAVISLLQPAPETYN 390 (1106)
Q Consensus 329 kqRvsia~al~~~p~vllLDEptsgLD~~----------------~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~ 390 (1106)
|||++||++++.+|++++|||||++||+. ...++.+.++++... + .+++.++|+..++..
T Consensus 89 ~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g-~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 89 KPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-G-FRYVYILNSPEEVEE 164 (171)
T ss_dssp HHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-T-CSEEEEECSHHHHHH
T ss_pred HHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-C-CcEEEEeCCHHHhhh
Confidence 99999999999999999999999999999 558888888776543 4 455567788777643
No 129
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.79 E-value=5.2e-21 Score=197.87 Aligned_cols=149 Identities=11% Similarity=0.089 Sum_probs=100.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHHHHHhcCCCcc
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTR 259 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 259 (1106)
.++|+||||||||||+++|+|.+. ..+.|... .+......++.++|++|+. ++.+++ ++ +.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--i~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~------ 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-FS-SK------ 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEE---EEEC------CCEEEEEET------TCCEEE-EE-ET------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcCCCEEh---hhhccccccceeEEEeecC------cHHHHH-HH-hh------
Confidence 579999999999999999999974 22334321 1111001245789999974 222222 00 00
Q ss_pred hhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhhhhHHHHHHH--
Q 001291 260 YEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEM-- 337 (1106)
Q Consensus 260 ~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~a-- 337 (1106)
.. + . +...+..++ .||||||||++||++
T Consensus 63 --------------~~-~-~-----------------------------~~~~~~~~~-----~lSgG~~qr~~la~aa~ 92 (178)
T 1ye8_A 63 --------------FF-T-S-----------------------------KKLVGSYGV-----NVQYFEELAIPILERAY 92 (178)
T ss_dssp --------------TC-C-C-----------------------------SSEETTEEE-----CHHHHHHHHHHHHHHHH
T ss_pred --------------cC-C-c-----------------------------ccccccccc-----CcCHHHHHHHHHHhhcc
Confidence 00 0 0 011233333 499999999999996
Q ss_pred ---HhcCCccceeec--CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEe--cChhHHHhhcCeEEEecCCeEEE
Q 001291 338 ---MVGPALALFMDE--ISTGLDSSTTFQIVNCFKQNIHINSGTAVISLL--QPAPETYNLFDDIILLSDGQIVY 405 (1106)
Q Consensus 338 ---l~~~p~vllLDE--ptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~--q~~~~~~~~~D~vilL~~G~iv~ 405 (1106)
++.+|++++||| ||++||+.....+.+.+++ .+.++++++| |+.+.+..++|+ .+|+++.
T Consensus 93 ~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 93 REAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred ccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 999999999999 9999999999988888764 3455777764 788888889998 5566654
No 130
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.77 E-value=6.8e-23 Score=228.21 Aligned_cols=160 Identities=11% Similarity=0.110 Sum_probs=117.4
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++||++.++ .++|+++|++|++|+++||+||||||||||+++|+|.. .|.|.
T Consensus 101 ~i~~~~vs~~y~--------------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I~------ 155 (305)
T 2v9p_A 101 FFNYQNIELITF--------------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSVL------ 155 (305)
T ss_dssp HHHHTTCCHHHH--------------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEEE------
T ss_pred eEEEEEEEEEcC--------------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceEE------
Confidence 377888887764 13799999999999999999999999999999999975 35552
Q ss_pred ChhcccceEEEEccCCCCCCCCCHHH-HHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001291 923 KQETFARISGYCEQNDIHSPFVTVYE-SLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQR 1001 (1106)
Q Consensus 923 ~~~~~~~~~g~v~q~~~~~~~~tv~e-~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqr 1001 (1106)
+|++|++.++. .|++| |+.|.. +.. . .+++.++.+ |.+..+ +..||||||
T Consensus 156 ---------~~v~q~~~lf~-~ti~~~ni~~~~------~~~-~----~~~~~i~~~-L~~gld-------g~~LSgGqk 206 (305)
T 2v9p_A 156 ---------SFANHKSHFWL-ASLADTRAALVD------DAT-H----ACWRYFDTY-LRNALD-------GYPVSIDRK 206 (305)
T ss_dssp ---------CGGGTTSGGGG-GGGTTCSCEEEE------EEC-H----HHHHHHHHT-TTGGGG-------TCCEECCCS
T ss_pred ---------EEecCcccccc-ccHHHHhhccCc------ccc-H----HHHHHHHHH-hHccCC-------ccCcCHHHH
Confidence 45667665544 46665 665531 111 1 244555553 333222 236999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1002 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
|| ||||+.+|+||| ||+||+.++..|+. ++|+++ ..+.||++ +|++ |++++.|+.
T Consensus 207 QR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~~-G~iv~~g~~ 261 (305)
T 2v9p_A 207 HK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQ--TFRFEQPC-TDES-GEQPFNITD 261 (305)
T ss_dssp SC---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEE--EEECCCCC-CCC----CCCCCCH
T ss_pred HH---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHH--HHHhCCEE-EEeC-CEEEEeCCH
Confidence 99 999999999999 99999999988862 189986 35789999 9974 789988864
No 131
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.76 E-value=2.3e-20 Score=209.07 Aligned_cols=172 Identities=15% Similarity=0.109 Sum_probs=125.5
Q ss_pred eeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh-------cc--cceEEEEccCCC-CC
Q 001291 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE-------TF--ARISGYCEQNDI-HS 941 (1106)
Q Consensus 872 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~g~v~q~~~-~~ 941 (1106)
++++||++++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+ ++.++|++|++. ..
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 3578899999999999999999999999999996542 358899999876421 12 235899999988 77
Q ss_pred CCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--eEEE
Q 001291 942 PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPS--IIFM 1019 (1106)
Q Consensus 942 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~--illL 1019 (1106)
+..|++|++.++.. + ..+ ..+++.+|+.+..+... .+|| |||++|||||+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~-~-~~d----------~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKE-E-GYD----------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHH-T-TCS----------EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHH-c-CCc----------chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEEE
Confidence 88899999987532 1 100 12455666665555443 3589 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEecCcc-------H-HHHHhcCeEEEEecC
Q 001291 1020 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPS-------I-DIFEAFDELFLMKRG 1072 (1106)
Q Consensus 1020 DEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~tH~~~-------~-~~~~~~D~v~~l~~g 1072 (1106)
| ||+|||+..+. +++. +.|.|+|++||... . ......+.|.++..|
T Consensus 228 D-ptsglD~~~~~------~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~G 282 (302)
T 3b9q_A 228 D-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVG 282 (302)
T ss_dssp E-GGGGGGGHHHH------HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECS
T ss_pred e-CCCCcCHHHHH------HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCC
Confidence 9 99999998652 3443 35899999999321 0 122345678888764
No 132
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.76 E-value=2.1e-20 Score=209.41 Aligned_cols=174 Identities=14% Similarity=0.139 Sum_probs=128.7
Q ss_pred eeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC---------ccceEEEEcCCCC-C
Q 001291 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV---------PERTAAYISQHDN-H 237 (1106)
Q Consensus 168 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---------~~~~~~yv~Q~d~-~ 237 (1106)
++++|+.+++|++++|+||||||||||++.|+|.+.|+ +|+|.++|.+..... .++.++|++|++. .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 45788999999999999999999999999999999887 899999998864321 1236899999987 8
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccccccccc
Q 001291 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1106)
++.+||+|++.++... +. | ..+++.+|+.+..+..++
T Consensus 167 ~~~~~v~e~l~~~~~~-~~-----------------------d-------------------~~lldt~gl~~~~~~~~~ 203 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEE-GY-----------------------D-------------------VVLCDTSGRLHTNYSLME 203 (302)
T ss_dssp CHHHHHHHHHHHHHHT-TC-----------------------S-------------------EEEECCCCCSSCCHHHHH
T ss_pred CHHHHHHHHHHHHHHc-CC-----------------------c-------------------chHHhcCCCCcchhHHHH
Confidence 8899999999986421 10 0 002344677666666665
Q ss_pred CccCCCCChhhhhHHHHHHHHhcCCc--cceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC---------hh
Q 001291 318 DEMRRGVSGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQP---------AP 386 (1106)
Q Consensus 318 ~~~~rgLSGGqkqRvsia~al~~~p~--vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~---------~~ 386 (1106)
+ || |||++||++++.+|+ +|+|| ||+|||+.... +++.+..+.++++ ++|- ..
T Consensus 204 e-----LS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~------~~~~~~~g~t~ii-iThlD~~~~~g~~l~ 267 (302)
T 3b9q_A 204 E-----LI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI-LTKLDGSARGGCVVS 267 (302)
T ss_dssp H-----HH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE-EECCSSCSCTHHHHH
T ss_pred H-----HH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH------HHHHHhcCCCEEE-EeCCCCCCccChhee
Confidence 5 99 999999999999999 99999 99999987652 2332223445554 5552 23
Q ss_pred HHHhhcCeEEEecCCeE
Q 001291 387 ETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 387 ~~~~~~D~vilL~~G~i 403 (1106)
.+....+.|..+..|+.
T Consensus 268 ~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 268 VVEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHHCCCEEEEECSSS
T ss_pred hHHHHCCCEEEEeCCCC
Confidence 34456678888888864
No 133
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.75 E-value=2.6e-20 Score=205.49 Aligned_cols=145 Identities=14% Similarity=0.158 Sum_probs=88.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHHHHHhcCCCcc
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTR 259 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 259 (1106)
.++|+||||||||||+|+|+|...|+ +|+|.++|.++......+.++|++|++.+++.+||.||+.|+........+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 47899999999999999999999987 999999998875544457899999999999999999999987533210000
Q ss_pred hhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhhhhHHHHHHHHh
Q 001291 260 YEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMV 339 (1106)
Q Consensus 260 ~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~al~ 339 (1106)
+ .+...+. ....+..+++ ||||||||+++||+++
T Consensus 81 -~------------------------------------~i~~~~~----~~~~~~~~~~-----LS~G~~qrv~iaRal~ 114 (270)
T 3sop_A 81 -E------------------------------------PIEKYIN----EQYEKFLKEE-----VNIARKKRIPDTRVHC 114 (270)
T ss_dssp -H------------------------------------HHHHHHH----HHHHHHHHHH-----SCTTCCSSCCCCSCCE
T ss_pred -H------------------------------------HHHHHHH----HHHHhhhHHh-----cCcccchhhhhheeee
Confidence 0 0000111 1222344433 9999999999999987
Q ss_pred cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEe
Q 001291 340 GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLL 382 (1106)
Q Consensus 340 ~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~ 382 (1106)
. ++|||||++|||+.. . +.++.+.. . .++|++++
T Consensus 115 ~---lllldep~~gL~~lD-~---~~l~~L~~-~-~~vI~Vi~ 148 (270)
T 3sop_A 115 C---LYFISPTGHSLRPLD-L---EFMKHLSK-V-VNIIPVIA 148 (270)
T ss_dssp E---EEEECCCSSSCCHHH-H---HHHHHHHT-T-SEEEEEET
T ss_pred e---eEEEecCCCcCCHHH-H---HHHHHHHh-c-CcEEEEEe
Confidence 5 999999999999987 3 33444432 2 55555443
No 134
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.75 E-value=2.3e-22 Score=215.42 Aligned_cols=178 Identities=10% Similarity=-0.018 Sum_probs=111.2
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh----cccceEEEEccCCCCCCCCC
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE----TFARISGYCEQNDIHSPFVT 945 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~g~v~q~~~~~~~~t 945 (1106)
.-|+||||+|++|++++|+||||||||||+++|+|..+ |.|.+ |.+.... ..++.++|++|++..++.++
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHST-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCC-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 36899999999999999999999999999999999652 56777 6543211 12345789998765433221
Q ss_pred H-HHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH-----HHHHhcCCCeEEE
Q 001291 946 V-YESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTI-----AVELVANPSIIFM 1019 (1106)
Q Consensus 946 v-~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~i-----A~aL~~~p~illL 1019 (1106)
. .+++.+ ..+..+ ... .....++++++...+. +.+ .+|||||+||++| +++++.+|++++|
T Consensus 85 ~~~~~l~~-~~~~~~--~~g-~~~~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~L 151 (218)
T 1z6g_A 85 KNEDFLEY-DNYANN--FYG-TLKSEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTDVL 151 (218)
T ss_dssp HTTCEEEE-EEETTE--EEE-EEHHHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHHHH
T ss_pred hccchhhh-hhcccc--cCC-CcHHHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHH
Confidence 1 011100 001100 000 0122356677654432 111 2489999999999 8999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-------CCceEEEEecCccHHHHHhcCeEE
Q 001291 1020 DEPTSGLDARAAAIVMRTVRNTVD-------TGRTVVCTIHQPSIDIFEAFDELF 1067 (1106)
Q Consensus 1020 DEPTsgLD~~~~~~i~~~l~~~~~-------~g~tvi~~tH~~~~~~~~~~D~v~ 1067 (1106)
||||+++|..+...|.+.+.++.. .+.+.|+++|+++ +....+++++
T Consensus 152 de~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~-ea~~~~~~ii 205 (218)
T 1z6g_A 152 LSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLT-LTYQQLKNYL 205 (218)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHH-HHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHH-HHHHHHHHHH
Confidence 999999999999999988877643 3567778888775 4555566554
No 135
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.74 E-value=1.7e-20 Score=206.92 Aligned_cols=148 Identities=14% Similarity=0.117 Sum_probs=95.6
Q ss_pred EEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVN 963 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 963 (1106)
.+||+||||||||||+++|+|... +..|+|.++|.+......++.+||++|++.+.+.+||.|++.|+..... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--ENC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HHH
Confidence 489999999999999999999755 3479999999876544455789999999988888999999988754321 111
Q ss_pred hHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001291 964 SETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043 (1106)
Q Consensus 964 ~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~ 1043 (1106)
. +.+.+.++ ..+.+... .+||+|||||++||||++. ++||||||+|||+.. .+.++.+.+
T Consensus 80 ~----~~i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 W----EPIEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp S----HHHHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred H----HHHHHHHH----HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 1 12233332 22333332 2599999999999999886 999999999999986 344555555
Q ss_pred CCceEEEEecCcc
Q 001291 1044 TGRTVVCTIHQPS 1056 (1106)
Q Consensus 1044 ~g~tvi~~tH~~~ 1056 (1106)
. .+||+++|..+
T Consensus 140 ~-~~vI~Vi~K~D 151 (270)
T 3sop_A 140 V-VNIIPVIAKAD 151 (270)
T ss_dssp T-SEEEEEETTGG
T ss_pred c-CcEEEEEeccc
Confidence 5 89999998754
No 136
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.74 E-value=1.8e-19 Score=204.65 Aligned_cols=131 Identities=18% Similarity=0.116 Sum_probs=102.9
Q ss_pred EeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhc-ccceEEEEccCCCCCCCCCHHHH
Q 001291 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQET-FARISGYCEQNDIHSPFVTVYES 949 (1106)
Q Consensus 871 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~-~~~~~g~v~q~~~~~~~~tv~e~ 949 (1106)
+++++++.+++|++++|+||||||||||+++|+|...+ .+|.|.++|.+..... .++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCeeccccccchhEEEEEe--------------
Confidence 78999999999999999999999999999999997654 3789999886421100 111222211
Q ss_pred HHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 001291 950 LFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029 (1106)
Q Consensus 950 l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~ 1029 (1106)
+ +||+||++||+||..+|++|+|||||+.
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~~---- 252 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRSS---- 252 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCST----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCChH----
Confidence 1 7999999999999999999999999982
Q ss_pred HHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCC
Q 001291 1030 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1106)
Q Consensus 1030 ~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG 1073 (1106)
.++++|+.+...+.|+|+|+|+++ ..+.+||+++|.+|+
T Consensus 253 ---e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 253 ---EAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSN 291 (330)
T ss_dssp ---HHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTS
T ss_pred ---HHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCC
Confidence 356677776543358999999987 567899999998763
No 137
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.74 E-value=1.8e-17 Score=189.56 Aligned_cols=75 Identities=23% Similarity=0.320 Sum_probs=68.3
Q ss_pred CCCCHHHHH------HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEE
Q 001291 994 NGLSTEQRK------RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 1067 (1106)
Q Consensus 994 ~~LS~Gqrq------rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~ 1067 (1106)
..||||||| |+++|++|+.+|++|||||||+|||+.++..+.+.|+++.+.|.|||+||||++ +...||+++
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~--~~~~~d~~~ 324 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADHVI 324 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSEEE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH--HHHhCCEEE
Confidence 469999999 677888888899999999999999999999999999998777899999999964 578899999
Q ss_pred EEe
Q 001291 1068 LMK 1070 (1106)
Q Consensus 1068 ~l~ 1070 (1106)
+|.
T Consensus 325 ~l~ 327 (339)
T 3qkt_A 325 RIS 327 (339)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 138
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.74 E-value=3.1e-21 Score=204.99 Aligned_cols=184 Identities=11% Similarity=0.064 Sum_probs=112.9
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
.++|+| ..+++|++++|+||||||||||+++|+|.++. +.+.+.+.+.+... ..++.++|++|++..++.+|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 457888 68999999999999999999999999999852 23333333322211 1235689999987777777777
Q ss_pred HHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHH------HHHcCCcccccccccC
Q 001291 245 ETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYY------LKVLGLDICADTMVGD 318 (1106)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~------l~~lgL~~~~dt~vg~ 318 (1106)
|++.+.....+....|.. .+. +....++.. ++.+|+...++..++.
T Consensus 83 ~~l~~~~~~~~n~~~~g~----~~~------------------------~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 134 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGT----LAQ------------------------PVRAAAATGVPVLIEVDLAGARAIKKTMPEA 134 (207)
T ss_dssp TCEEEEEEEGGGTEEEEE----EHH------------------------HHHHHHHHTCCEEEECCHHHHHHHHHHCTTS
T ss_pred CCceeehhhcCchhhcCC----cHH------------------------HHHHHHHcCCeEEEEeCHHHHHHHHHhcCCc
Confidence 765432111000000000 000 011112222 3344444444544433
Q ss_pred ccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCC----CHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGL----DSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 319 ~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgL----D~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
|| +|+.+|++++|||||+|| |+..+.++.+.++++.+..+ .+++.++|+..++..+||+
T Consensus 135 -----lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g-~tvi~vtHdl~~~~~~~d~ 197 (207)
T 1znw_A 135 -----VT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGD-FDKVVVNRRLESACAELVS 197 (207)
T ss_dssp -----EE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGG-SSEEEECSSHHHHHHHHHH
T ss_pred -----EE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcc-CcEEEECCCHHHHHHHHHH
Confidence 66 899999999999999998 78899999999988765434 4556678999999999999
Q ss_pred EEEec
Q 001291 395 IILLS 399 (1106)
Q Consensus 395 vilL~ 399 (1106)
|++|.
T Consensus 198 i~~l~ 202 (207)
T 1znw_A 198 LLVGT 202 (207)
T ss_dssp HHC--
T ss_pred HHHhc
Confidence 99984
No 139
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.73 E-value=1.3e-19 Score=206.63 Aligned_cols=170 Identities=15% Similarity=0.120 Sum_probs=126.2
Q ss_pred eeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh-------cc--cceEEEEccCCC-CCC
Q 001291 873 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE-------TF--ARISGYCEQNDI-HSP 942 (1106)
Q Consensus 873 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~g~v~q~~~-~~~ 942 (1106)
..+||++++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+ ++.++|++|++. ..+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc--cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 467889999999999999999999999999996542 258899999876421 12 235899999987 778
Q ss_pred CCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--eEEEe
Q 001291 943 FVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPS--IIFMD 1020 (1106)
Q Consensus 943 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~--illLD 1020 (1106)
..|++|++.++.... .. ..+++.+|+.+..+... .+|| |||++|||+|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 889999998753211 00 12455666666555443 3588 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEecC---------ccHHHHHhcCeEEEEecC
Q 001291 1021 EPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ---------PSIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 1021 EPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~tH~---------~~~~~~~~~D~v~~l~~g 1072 (1106)
||+|||+..+. +++. ..|.|+|++||. ++. .....+.|.++..|
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi-~~~~~~pI~~ig~G 339 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSV-VEELGIPVKFIGVG 339 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHH-HHHHCCCEEEEECS
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHH-HHHhCCCEEEEeCC
Confidence 99999988653 3333 348999999993 221 23345677777654
No 140
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.73 E-value=5.9e-18 Score=193.27 Aligned_cols=81 Identities=14% Similarity=0.135 Sum_probs=72.2
Q ss_pred CCChhhhhHHHHHHHHh---------cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcC
Q 001291 323 GVSGGQKKRVTTGEMMV---------GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFD 393 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~---------~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 393 (1106)
.+|||||||++||++|+ ++|+||||||||++||+..+..+++.++++ . .++++++|. .+ .+|
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~----~-qt~i~~th~-~~---~~~ 335 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV----P-QAIVTGTEL-AP---GAA 335 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS----S-EEEEEESSC-CT---TCS
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc----C-cEEEEEEec-cc---cCC
Confidence 59999999999999999 899999999999999999999999999864 2 567777774 33 899
Q ss_pred eEEEecCCeEEEEcCHHHH
Q 001291 394 DIILLSDGQIVYQGPRELV 412 (1106)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~ 412 (1106)
++++|++|+++..|+++++
T Consensus 336 ~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 336 LTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEEEEETTEEEECCCTTTS
T ss_pred EEEEEECCEEEecCCHHHH
Confidence 9999999999999998765
No 141
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.73 E-value=4.8e-20 Score=216.41 Aligned_cols=180 Identities=15% Similarity=0.115 Sum_probs=139.7
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCc---cCCCC--------CccceEEEEc
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGH---NMDEF--------VPERTAAYIS 232 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~---~~~~~--------~~~~~~~yv~ 232 (1106)
...+|+++ +.+.+|+.++|+|||||||||||++|+|..+++ +|.|.++|. ++.++ ..++.++||+
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~ 219 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFIENILGPDGRARSVVIAA 219 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEE
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHHHhhccccccCceEEEEE
Confidence 45699999 999999999999999999999999999999998 999999998 44332 1246899999
Q ss_pred CC-CCCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccc
Q 001291 233 QH-DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDIC 311 (1106)
Q Consensus 233 Q~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1106)
|+ +..++.+||.+|+.+.++.... +. .+. ...
T Consensus 220 q~~~~~~~~~~v~~~~~~~ae~~~~--------------~~------~~v---------------------------~~~ 252 (438)
T 2dpy_A 220 PADVSPLLRMQGAAYATRIAEDFRD--------------RG------QHV---------------------------LLI 252 (438)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHT--------------TT------CEE---------------------------EEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh--------------CC------CCH---------------------------HHH
Confidence 95 5567788999999987643210 00 000 000
Q ss_pred ccccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHh--cCCe-----EEEEEecC
Q 001291 312 ADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHI--NSGT-----AVISLLQP 384 (1106)
Q Consensus 312 ~dt~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~--~~~t-----~ii~i~q~ 384 (1106)
.|. ...+|+|| |||+|| +++|++ |+|||+.+...+.+.++++.+. .++. +|++++|+
T Consensus 253 ld~------l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHd 316 (438)
T 2dpy_A 253 MDS------LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDD 316 (438)
T ss_dssp EEC------HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSC
T ss_pred HHh------HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCC
Confidence 011 12399999 999999 888887 9999999999999999876542 2243 66667787
Q ss_pred hhHHHhhcCeEEEecCCeEEEEcCHHHH
Q 001291 385 APETYNLFDDIILLSDGQIVYQGPRELV 412 (1106)
Q Consensus 385 ~~~~~~~~D~vilL~~G~iv~~G~~~~~ 412 (1106)
.. ..++|++++|.+|+++..|++.++
T Consensus 317 l~--~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 317 QQ--DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp SC--CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred cc--chhhceEEEEeCcEEEEeCCHHHc
Confidence 76 678999999999999999988765
No 142
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.72 E-value=2.4e-19 Score=204.36 Aligned_cols=173 Identities=14% Similarity=0.143 Sum_probs=128.9
Q ss_pred eceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC---------ccceEEEEcCCCC-CC
Q 001291 169 KDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV---------PERTAAYISQHDN-HI 238 (1106)
Q Consensus 169 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---------~~~~~~yv~Q~d~-~~ 238 (1106)
+++|+.+++|++++|+||||||||||++.|+|.+.|+ +|+|.++|.++.... .++.++|++|++. .+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4688899999999999999999999999999999887 899999998864321 1246899999987 88
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccC
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1106)
+.+||+|++.++... +. | ..+++.+|+.+..+..+++
T Consensus 225 p~~tv~e~l~~~~~~-~~-----------------------d-------------------~~lldt~Gl~~~~~~~~~e 261 (359)
T 2og2_A 225 AATVLSKAVKRGKEE-GY-----------------------D-------------------VVLCDTSGRLHTNYSLMEE 261 (359)
T ss_dssp HHHHHHHHHHHHHHT-TC-----------------------S-------------------EEEEECCCCSSCCHHHHHH
T ss_pred hhhhHHHHHHHHHhC-CC-----------------------H-------------------HHHHHhcCCChhhhhHHHH
Confidence 899999999986421 10 0 0023345676666666654
Q ss_pred ccCCCCChhhhhHHHHHHHHhcCCc--cceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC---------hhH
Q 001291 319 EMRRGVSGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQP---------APE 387 (1106)
Q Consensus 319 ~~~rgLSGGqkqRvsia~al~~~p~--vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~---------~~~ 387 (1106)
|| |||++||++++.+|+ +|+|| ||+|||+.... +.+.+..+.++|+ ++|. ...
T Consensus 262 -----LS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~ii-iThlD~~~~gG~~lsi 325 (359)
T 2og2_A 262 -----LI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI-LTKLDGSARGGCVVSV 325 (359)
T ss_dssp -----HH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE-EESCTTCSCTHHHHHH
T ss_pred -----HH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEE-EecCcccccccHHHHH
Confidence 89 999999999999999 99999 99999987653 2222223445554 5552 233
Q ss_pred HHhhcCeEEEecCCeE
Q 001291 388 TYNLFDDIILLSDGQI 403 (1106)
Q Consensus 388 ~~~~~D~vilL~~G~i 403 (1106)
+....+.|..+..|+.
T Consensus 326 ~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 326 VEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHhCCCEEEEeCCCC
Confidence 4456678888888764
No 143
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.72 E-value=1.6e-21 Score=208.91 Aligned_cols=155 Identities=12% Similarity=0.083 Sum_probs=94.9
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc----cceEEEEcCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1106)
..-|+|||+.+++|++++|+||||||||||+++|+|.+ | |+|.+ |.+.....+ ++.++|++|++..|+.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 34799999999999999999999999999999999987 4 77888 766533222 3568899997654433
Q ss_pred CCH-HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCc
Q 001291 241 MTV-RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDE 319 (1106)
Q Consensus 241 lTV-~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1106)
++. .+++.+. ... +..|.. ....++.+++...+ ..+.
T Consensus 83 ~~~~~~~l~~~-~~~--~~~~g~--------------------------------~~~~i~~~l~~~~~-----~il~-- 120 (218)
T 1z6g_A 83 KLKNEDFLEYD-NYA--NNFYGT--------------------------------LKSEYDKAKEQNKI-----CLFE-- 120 (218)
T ss_dssp HHHTTCEEEEE-EET--TEEEEE--------------------------------EHHHHHHHHHTTCE-----EEEE--
T ss_pred hhhccchhhhh-hcc--cccCCC--------------------------------cHHHHHHHHhCCCc-----EEEE--
Confidence 220 0111000 000 000000 00112333443221 1111
Q ss_pred cCCCCChhhhhHHHH-----HHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHH
Q 001291 320 MRRGVSGGQKKRVTT-----GEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNI 370 (1106)
Q Consensus 320 ~~rgLSGGqkqRvsi-----a~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~ 370 (1106)
..+|||||||+++ +++++.+|++++|||||+++|..+...|.+.+.+..
T Consensus 121 --~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~ 174 (218)
T 1z6g_A 121 --MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLN 174 (218)
T ss_dssp --ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred --ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3489999999999 899999999999999999999999989988887653
No 144
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.72 E-value=1e-19 Score=213.56 Aligned_cols=174 Identities=17% Similarity=0.090 Sum_probs=134.1
Q ss_pred eEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCc---cCCh--------hcccceEEEEccC
Q 001291 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGY---PKKQ--------ETFARISGYCEQN 937 (1106)
Q Consensus 869 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~---~~~~--------~~~~~~~g~v~q~ 937 (1106)
..+|+++ |.|.+|++++|+||||||||||+++|+|...+ ..|.|.++|. +... ...++.++|++|+
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~--~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~ 221 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA--DVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPA 221 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECT
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC--CeEEEEEeceecHHHHHHHHhhccccccCceEEEEECC
Confidence 4589999 99999999999999999999999999997654 4799999997 3321 2345779999995
Q ss_pred -CCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCe
Q 001291 938 -DIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSI 1016 (1106)
Q Consensus 938 -~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~i 1016 (1106)
....+.+|+.+++.+.+...... . . ....+.+. ...||+|| ||++|| +.+|++
T Consensus 222 ~~~~~~~~~v~~~~~~~ae~~~~~---~-------~------~v~~~ld~------l~~lS~g~-qrvslA---l~~p~~ 275 (438)
T 2dpy_A 222 DVSPLLRMQGAAYATRIAEDFRDR---G-------Q------HVLLIMDS------LTRYAMAQ-REIALA---IGEPPA 275 (438)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTT---T-------C------EEEEEEEC------HHHHHHHH-HHHHHH---TTCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhC---C-------C------CHHHHHHh------HHHHHHHH-HHHHHH---hCCCcc
Confidence 44456678899887765322100 0 0 00111122 23599999 999999 889988
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh---C-Cc-----eEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1017 IFMDEPTSGLDARAAAIVMRTVRNTVD---T-GR-----TVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1017 llLDEPTsgLD~~~~~~i~~~l~~~~~---~-g~-----tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
|+|||+.....+.+++.++.+ + |+ ||++++||++ ...||++++|.+ |+++..|++
T Consensus 276 ------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~d-G~Ivl~~~~ 339 (438)
T 2dpy_A 276 ------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILD-GHIVLSRRL 339 (438)
T ss_dssp ------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSS-EEEEECHHH
T ss_pred ------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeC-cEEEEeCCH
Confidence 999999999999999999865 3 64 9999999997 367899999974 799988764
No 145
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.71 E-value=6.3e-18 Score=193.05 Aligned_cols=80 Identities=13% Similarity=0.153 Sum_probs=71.8
Q ss_pred CCCHHHHHHHHHHHHHh---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCe
Q 001291 995 GLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1065 (1106)
Q Consensus 995 ~LS~Gqrqrl~iA~aL~---------~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~ 1065 (1106)
.||+|||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. + + .+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~---~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P---GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---cCCE
Confidence 59999999999999999 8999999999999999999999999998863 799999994 4 2 7999
Q ss_pred EEEEecCCEEEEEecCCC
Q 001291 1066 LFLMKRGGREVYVGPLGH 1083 (1106)
Q Consensus 1066 v~~l~~gG~~~~~G~~~~ 1083 (1106)
+++|++ |+++..|++.+
T Consensus 337 i~~l~~-G~i~~~g~~~~ 353 (359)
T 2o5v_A 337 TLRAQA-GRFTPVADEEM 353 (359)
T ss_dssp EEEEET-TEEEECCCTTT
T ss_pred EEEEEC-CEEEecCCHHH
Confidence 999985 79999888653
No 146
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.69 E-value=4.7e-18 Score=190.67 Aligned_cols=182 Identities=15% Similarity=0.142 Sum_probs=113.3
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEE-EEEEcCccCChhcccceEEEEccCCCCCCCCCHHH
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-DIRISGYPKKQETFARISGYCEQNDIHSPFVTVYE 948 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G-~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e 948 (1106)
.+|+++++.+++|++++|+||||||||||++.|+|...+ ..| .+.+.+.........+.+.++.+... +++.+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhcc
Confidence 478999999999999999999999999999999995331 124 44333323222222222222333221 12223
Q ss_pred HHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH-HHHHHHHHHHhcCCCeEEEeCCCC---
Q 001291 949 SLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQ-RKRLTIAVELVANPSIIFMDEPTS--- 1024 (1106)
Q Consensus 949 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gq-rqrl~iA~aL~~~p~illLDEPTs--- 1024 (1106)
++..+. + ..+...+.++++++...+. +.+. +.++|.+| +||+. |+++..+|++||+||||+
T Consensus 97 ~l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~~------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~ 161 (296)
T 1cr0_A 97 SLKREI-I------ENGKFDQWFDELFGNDTFH-LYDS------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVS 161 (296)
T ss_dssp HHHHHH-H------HHTHHHHHHHHHHSSSCEE-EECC------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC----
T ss_pred ccccCC-C------CHHHHHHHHHHHhccCCEE-EECC------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCC
Confidence 333221 1 1112222334443322221 1111 12489998 66666 999999999999999999
Q ss_pred C---CCH-HHHHHHHHHHHHHHhC-CceEEEEecCc--cH-------------------HHHHhcCeEEEEecC
Q 001291 1025 G---LDA-RAAAIVMRTVRNTVDT-GRTVVCTIHQP--SI-------------------DIFEAFDELFLMKRG 1072 (1106)
Q Consensus 1025 g---LD~-~~~~~i~~~l~~~~~~-g~tvi~~tH~~--~~-------------------~~~~~~D~v~~l~~g 1072 (1106)
+ +|. .....+++.|++++++ |+|||+++|+. +. .+...||++++|++|
T Consensus 162 ~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~ 235 (296)
T 1cr0_A 162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (296)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecC
Confidence 5 555 6678899999998754 99999999995 20 356789999999875
No 147
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.69 E-value=2.6e-19 Score=201.43 Aligned_cols=128 Identities=10% Similarity=0.013 Sum_probs=96.9
Q ss_pred ceeE-EEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHHH
Q 001291 170 DVSG-IVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLA 248 (1106)
Q Consensus 170 ~vs~-~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1106)
|+|. .+++|++++|+||||||||||+++|+|.+.|. .|. +.++||+|++.+++. |++||+.
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~--------------~~v~~v~qd~~~~~~-t~~e~~~ 142 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH--------------PRVDLVTTDGFLYPN-AELQRRN 142 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC--------------CCEEEEEGGGGBCCH-HHHHHTT
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC--------------CeEEEEecCccCCcc-cHHHHHH
Confidence 4444 37899999999999999999999999999874 332 368999999988888 9999975
Q ss_pred HHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhh
Q 001291 249 FAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQ 328 (1106)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGq 328 (1106)
+... .+. |+. .....+...++.++ ....+..+.. |||||
T Consensus 143 ~~~~-~g~--------------------~~~--------------~d~~~~~~~L~~l~-~~~~~~~~~~-----lS~G~ 181 (312)
T 3aez_A 143 LMHR-KGF--------------------PES--------------YNRRALMRFVTSVK-SGSDYACAPV-----YSHLH 181 (312)
T ss_dssp CTTC-TTS--------------------GGG--------------BCHHHHHHHHHHHH-TTCSCEEEEE-----EETTT
T ss_pred HHHh-cCC--------------------ChH--------------HHHHHHHHHHHHhC-CCcccCCccc-----CChhh
Confidence 4210 111 000 00123445677777 4444555544 99999
Q ss_pred hhHHHHHHHHhcCCccceeecCCCCCCH
Q 001291 329 KKRVTTGEMMVGPALALFMDEISTGLDS 356 (1106)
Q Consensus 329 kqRvsia~al~~~p~vllLDEptsgLD~ 356 (1106)
+||+++|++++.+|+|+|||||+..+|+
T Consensus 182 ~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 182 YDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhhhhhHHHhccCCCEEEECCccccCCc
Confidence 9999999999999999999999999986
No 148
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.67 E-value=4.5e-18 Score=193.08 Aligned_cols=132 Identities=11% Similarity=0.164 Sum_probs=99.3
Q ss_pred eeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHH
Q 001291 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRET 246 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (1106)
+++++|+.+++|++++|+|||||||||||++|+|.++|+ +|.|+++|.+. .. .+.
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~e--~~--------------~~~------ 214 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTEE--IV--------------FKH------ 214 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSCC--CC--------------CSS------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCeec--cc--------------ccc------
Confidence 799999999999999999999999999999999999997 99999998531 10 000
Q ss_pred HHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCCh
Q 001291 247 LAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSG 326 (1106)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSG 326 (1106)
.+ +.. ..+ .| |
T Consensus 215 ----~~-~~i---------------------------------------------------------~~~-----~g--g 225 (330)
T 2pt7_A 215 ----HK-NYT---------------------------------------------------------QLF-----FG--G 225 (330)
T ss_dssp ----CS-SEE---------------------------------------------------------EEE-----CB--T
T ss_pred ----ch-hEE---------------------------------------------------------EEE-----eC--C
Confidence 00 000 000 01 8
Q ss_pred hhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSG-TAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 327 GqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~-t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
||+||++||+||..+|++++|||||+. ++.+.|+.+. .++ +++++ +|... +.+.+|++++|.+|+.
T Consensus 226 g~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~--~g~~tvi~t-~H~~~-~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 226 NITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLC--SGHKGTLTT-LHAGS-SEEAFIRLANMSSSNS 292 (330)
T ss_dssp TBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHH--TTCCCEEEE-EECSS-HHHHHHHHHHHHHTSG
T ss_pred ChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHh--cCCCEEEEE-EcccH-HHHHhhhheehhcCCc
Confidence 999999999999999999999999982 3455666543 344 45554 45444 7889999999988853
No 149
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.67 E-value=1.3e-16 Score=159.23 Aligned_cols=75 Identities=23% Similarity=0.296 Sum_probs=69.1
Q ss_pred CCCCHHHHHHHHHH------HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEE
Q 001291 994 NGLSTEQRKRLTIA------VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 1067 (1106)
Q Consensus 994 ~~LS~Gqrqrl~iA------~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~ 1067 (1106)
.+||||||||++|| |||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||++. +...||+++
T Consensus 56 ~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~--~~~~~d~ii 133 (148)
T 1f2t_B 56 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADHVI 133 (148)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSEEE
T ss_pred hHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH--HHHhCCEEE
Confidence 46999999999876 8999999999999999999999999999999998777899999999984 567899999
Q ss_pred EEe
Q 001291 1068 LMK 1070 (1106)
Q Consensus 1068 ~l~ 1070 (1106)
+|+
T Consensus 134 ~l~ 136 (148)
T 1f2t_B 134 RIS 136 (148)
T ss_dssp EEE
T ss_pred EEE
Confidence 995
No 150
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.67 E-value=3.6e-16 Score=178.68 Aligned_cols=78 Identities=22% Similarity=0.333 Sum_probs=65.3
Q ss_pred CCCChhhhh------HHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001291 322 RGVSGGQKK------RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1106)
Q Consensus 322 rgLSGGqkq------Rvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 395 (1106)
..||||||| |+++|++++.+|++|+|||||+|||+..+..+++.|+++.. .+. +|++++|+ .++.+.||+|
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~-~vi~~sH~-~~~~~~~d~~ 323 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIP-QVILVSHD-EELKDAADHV 323 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GSS-EEEEEESC-GGGGGGCSEE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCC-EEEEEECh-HHHHHhCCEE
Confidence 459999999 67788889999999999999999999999999999998754 344 45556777 5688999999
Q ss_pred EEec--CCe
Q 001291 396 ILLS--DGQ 402 (1106)
Q Consensus 396 ilL~--~G~ 402 (1106)
++|. +|.
T Consensus 324 ~~l~~~~g~ 332 (339)
T 3qkt_A 324 IRISLENGS 332 (339)
T ss_dssp EEEEEETTE
T ss_pred EEEEecCCc
Confidence 9985 554
No 151
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.67 E-value=3.5e-18 Score=218.74 Aligned_cols=153 Identities=18% Similarity=0.175 Sum_probs=112.3
Q ss_pred eEEeeeeeeeeeC-------CeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCC
Q 001291 869 LVLLNGVSGAFRP-------GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHS 941 (1106)
Q Consensus 869 ~~~L~~vs~~i~~-------Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~ 941 (1106)
..+++|++|.+++ |++++|+|||||||||||++| |.... .++..+||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------------~aqiG~~Vpq~~~-- 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------------MAQMGCYVPAEVC-- 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------------HHTTTCCEESSEE--
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------------HhheeEEeccCcC--
Confidence 4689999999987 999999999999999999999 85420 1122238888753
Q ss_pred CCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeC
Q 001291 942 PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1021 (1106)
Q Consensus 942 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDE 1021 (1106)
.+|+.|++.. +. ++.+.... |.+.+|+|+++ +++|++++.+|+++||||
T Consensus 828 -~l~v~d~I~~----ri--------------------g~~d~~~~-----~~stf~~em~~-~a~al~la~~~sLlLLDE 876 (1022)
T 2o8b_B 828 -RLTPIDRVFT----RL--------------------GASDRIMS-----GESTFFVELSE-TASILMHATAHSLVLVDE 876 (1022)
T ss_dssp -EECCCSBEEE----EC--------------------C--------------CHHHHHHHH-HHHHHHHCCTTCEEEEEC
T ss_pred -CCCHHHHHHH----Hc--------------------CCHHHHhh-----chhhhHHHHHH-HHHHHHhCCCCcEEEEEC
Confidence 3455554411 11 11111110 12357887775 999999999999999999
Q ss_pred CCCCCCHHH-HHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEE
Q 001291 1022 PTSGLDARA-AAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREV 1076 (1106)
Q Consensus 1022 PTsgLD~~~-~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~ 1076 (1106)
||+|+|+.. ...++.+|+.+.++ |+++|++||+++. +...+|++.++. |++.
T Consensus 877 p~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el-~~~~~d~~~v~~--g~~~ 930 (1022)
T 2o8b_B 877 LGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSL-VEDYSQNVAVRL--GHMA 930 (1022)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHH-HHHTSSCSSEEE--EEEE
T ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHH-HHHhCCcceeec--CeEE
Confidence 999999987 56688999998876 9999999999873 556789988874 5666
No 152
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.66 E-value=1.4e-17 Score=186.91 Aligned_cols=186 Identities=13% Similarity=0.049 Sum_probs=111.9
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCcee-EEEECCccCCCCCccceEEEEcCCCCCCCCCC
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSG-RVTYNGHNMDEFVPERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G-~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1106)
..++|+++++.+++|++++|+||||||||||++.|+|.+.+. +| .|.|.+.+.......+.+.++.|... ++
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~ 93 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LR 93 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GG
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hh
Confidence 356899999999999999999999999999999999998775 56 66554432211000011111111110 11
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCC
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1106)
+.+++..+. ...++....++.+++..++. ..+ .. .
T Consensus 94 ~~~~l~~~~--------------------------------------~~~~~~~~~~~~~l~~~~l~-i~~-~~-----~ 128 (296)
T 1cr0_A 94 QSDSLKREI--------------------------------------IENGKFDQWFDELFGNDTFH-LYD-SF-----A 128 (296)
T ss_dssp GCHHHHHHH--------------------------------------HHHTHHHHHHHHHHSSSCEE-EEC-CC-----C
T ss_pred hccccccCC--------------------------------------CCHHHHHHHHHHHhccCCEE-EEC-CC-----C
Confidence 111221100 00011112233333322221 111 11 2
Q ss_pred CCChhh-hhHHHHHHHHhcCCccceeecCCC---C---CCH-HHHHHHHHHHHHHHHhcCCeEEEEEecCh--h------
Q 001291 323 GVSGGQ-KKRVTTGEMMVGPALALFMDEIST---G---LDS-STTFQIVNCFKQNIHINSGTAVISLLQPA--P------ 386 (1106)
Q Consensus 323 gLSGGq-kqRvsia~al~~~p~vllLDEpts---g---LD~-~~~~~i~~~l~~~~~~~~~t~ii~i~q~~--~------ 386 (1106)
.+|.+| +||+. |+++..+|+++++||||+ + +|. .....+++.|+++++..+.++|+ ++|.. .
T Consensus 129 ~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~-vsh~~r~~~~~~~~ 206 (296)
T 1cr0_A 129 EAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVV-ICHLKNPDKGKAHE 206 (296)
T ss_dssp SCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEE-EEECC---------
T ss_pred CCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE-EEecCccccccccc
Confidence 388888 67776 999999999999999999 5 455 66678889999988755555555 55553 3
Q ss_pred --------------HHHhhcCeEEEecCCeE
Q 001291 387 --------------ETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 387 --------------~~~~~~D~vilL~~G~i 403 (1106)
.+..+||+|++|++|+.
T Consensus 207 ~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 207 EGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp --------CCC---CHHHHCSEEEEEEEC--
T ss_pred cCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67889999999998874
No 153
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.64 E-value=2.1e-16 Score=190.89 Aligned_cols=76 Identities=17% Similarity=0.214 Sum_probs=65.5
Q ss_pred CCC-ChhhhhHHHHHHHHhcCC--ccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe
Q 001291 322 RGV-SGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1106)
Q Consensus 322 rgL-SGGqkqRvsia~al~~~p--~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 398 (1106)
..| ||||||||+||++|+.+| ++|+|||||+|||+.++..|.+.|++++. + .+|++++|... +...||++++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~-~~vi~itH~~~-~~~~~d~~~~~ 470 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--T-RQVLVVTHLAQ-IAARAHHHYKV 470 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--H-SEEEEECCCHH-HHHHSSEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--C-CEEEEEecCHH-HHHhCCEEEEE
Confidence 447 999999999999999999 99999999999999999999999999864 3 45566777755 55689999999
Q ss_pred cCC
Q 001291 399 SDG 401 (1106)
Q Consensus 399 ~~G 401 (1106)
++|
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 654
No 154
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.64 E-value=9.8e-19 Score=196.72 Aligned_cols=157 Identities=10% Similarity=-0.010 Sum_probs=108.8
Q ss_pred eeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcC
Q 001291 879 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRL 958 (1106)
Q Consensus 879 i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~ 958 (1106)
+++|+++||+||||||||||+++|+|...+. +|. +.++|++|++.+++. |++||+.+... +
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~--------~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~-~- 147 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW--------DHH--------PRVDLVTTDGFLYPN-AELQRRNLMHR-K- 147 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS--------TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTTC-T-
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc--------CCC--------CeEEEEecCccCCcc-cHHHHHHHHHh-c-
Confidence 8999999999999999999999999964321 121 347999999988887 99999854221 1
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 001291 959 PPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038 (1106)
Q Consensus 959 ~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l 1038 (1106)
+.......+.+.++++.++ ....+..+ ..||+||+||+++|++++.+|+|||||||++.+|+.. ..+
T Consensus 148 --g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l 214 (312)
T 3aez_A 148 --GFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMV 214 (312)
T ss_dssp --TSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCG
T ss_pred --CCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHH
Confidence 1122222345677888777 44333332 3599999999999999999999999999999998521 112
Q ss_pred HHHHhCCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 1039 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 1039 ~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
+++. + .+|+++|+.+.......+|.+.+.
T Consensus 215 ~~~~--D-~~I~V~a~~~~~~~R~i~R~~~~r 243 (312)
T 3aez_A 215 SDLF--D-FSLYVDARIEDIEQWYVSRFLAMR 243 (312)
T ss_dssp GGGC--S-EEEEEEECHHHHHHHHHHHHHHHT
T ss_pred HHhc--C-cEEEEECCHHHHHHHHHHHHHHHH
Confidence 2322 3 346677776543333456655543
No 155
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.64 E-value=1.9e-17 Score=180.50 Aligned_cols=162 Identities=16% Similarity=0.175 Sum_probs=99.8
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhh--CC-CCCceeEEEEEEcCccCChh--cccceEEEEccCCCCCCCCCHHHHHH
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLA--GR-KTGGYITGDIRISGYPKKQE--TFARISGYCEQNDIHSPFVTVYESLF 951 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~--g~-~~~~~~~G~i~i~g~~~~~~--~~~~~~g~v~q~~~~~~~~tv~e~l~ 951 (1106)
+.|++|++++|+||||||||||+++|+ |. ..+ .|.+.+++...... ...+.+|+.+|+....+.+++.++..
T Consensus 25 Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 101 (251)
T 2ehv_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG---EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVS 101 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC---
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccc
Confidence 378999999999999999999999999 54 332 35566666543221 11223455544322222222222111
Q ss_pred HhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCC----
Q 001291 952 YSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD---- 1027 (1106)
Q Consensus 952 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD---- 1027 (1106)
... ... ..+. ... ....+.++......+..-..+|++|+|||||++||
T Consensus 102 ~~~------------~~~-~~~~----------~~~-----~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d 153 (251)
T 2ehv_A 102 SVV------------GLP-SEEK----------FVL-----EDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEE 153 (251)
T ss_dssp --------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSS
T ss_pred ccc------------ccc-cccc----------eec-----cCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCC
Confidence 000 000 0000 000 01134555555555555568999999999999998
Q ss_pred -HHHHHHHHHHHHHHHhCCceEEEEecCccHHH---------HHhc-CeEEEEe
Q 001291 1028 -ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI---------FEAF-DELFLMK 1070 (1106)
Q Consensus 1028 -~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~---------~~~~-D~v~~l~ 1070 (1106)
+..++.+.++++.+++.|+|||++||+++ +. ...| |++++|+
T Consensus 154 ~~~~~~~l~~l~~~l~~~g~tii~vtH~~~-~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 154 ERKIREVLLKLNTILLEMGVTTILTTEAPD-PQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp GGGHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEEECCCC-CCcccccccChhhEeeeEEEEEe
Confidence 67777799999998878999999999987 34 4677 9999996
No 156
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.64 E-value=4e-16 Score=197.28 Aligned_cols=149 Identities=15% Similarity=0.089 Sum_probs=105.1
Q ss_pred eEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhh--------hCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCC
Q 001291 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL--------AGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIH 940 (1106)
Q Consensus 869 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l--------~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~ 940 (1106)
..+++|++|.+.+|++++|+|||||||||||+++ .|...+ ..+. .++.+.+
T Consensus 649 ~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vp--a~~~---------------~~~~~d~---- 707 (934)
T 3thx_A 649 AFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVP--CESA---------------EVSIVDC---- 707 (934)
T ss_dssp CCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBS--EEEE---------------EEECCSE----
T ss_pred eeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccc--cccc---------------cchHHHH----
Confidence 4689999999999999999999999999999999 342211 0110 0111000
Q ss_pred CCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH--hcCCCeEE
Q 001291 941 SPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVEL--VANPSIIF 1018 (1106)
Q Consensus 941 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL--~~~p~ill 1018 (1106)
++..+++.+ .. ..++|++++++..+|+++ +.+|+++|
T Consensus 708 ---------------------------------i~~~ig~~d---~l-----~~~lStf~~e~~~~a~il~~a~~~sLlL 746 (934)
T 3thx_A 708 ---------------------------------ILARVGAGD---SQ-----LKGVSTFMAEMLETASILRSATKDSLII 746 (934)
T ss_dssp ---------------------------------EEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEE
T ss_pred ---------------------------------HHHhcCchh---hH-----HHhHhhhHHHHHHHHHHHHhccCCcEEE
Confidence 000111111 01 124788888888888888 99999999
Q ss_pred EeCCCCCCCHHHHHHH-HHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCC
Q 001291 1019 MDEPTSGLDARAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1106)
Q Consensus 1019 LDEPTsgLD~~~~~~i-~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1082 (1106)
|||||+|+|+.....+ +.+++.+.+ .|+|+|++||+.+ +.+.+|++..+.+ |++...++.+
T Consensus 747 LDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~e--l~~lad~~~~v~n-g~v~~~~~~~ 809 (934)
T 3thx_A 747 IDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHE--LTALANQIPTVNN-LHVTALTTEE 809 (934)
T ss_dssp EESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGG--GGGGGGTCTTEEE-EEEEEEEETT
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHH--HHHHhcccceeEe-eEEEEEecCC
Confidence 9999999999888777 677777776 4999999999975 5688999888875 6777655443
No 157
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.63 E-value=1.6e-17 Score=181.17 Aligned_cols=156 Identities=9% Similarity=-0.002 Sum_probs=97.4
Q ss_pred CceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCH
Q 001291 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTV 946 (1106)
Q Consensus 867 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv 946 (1106)
+++.+|+||||++++|+++||+||||||||||+++|+|.. |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 4567999999999999999999999999999999999843 112222 2345689999985 5667899
Q ss_pred HHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001291 947 YESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1026 (1106)
Q Consensus 947 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgL 1026 (1106)
.+++.+....... +.......+.+.+.++.+ .+..+..+ ..||+||+||+.+ ++++.+|+++|||||....
T Consensus 76 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~l--~~~~~~~~-----~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNF-DHPDAFDNDLMHRTLKNI--VEGKTVEV-----PTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCT-TSGGGBCHHHHHHHHHHH--HTTCCEEE-----CCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCC-CCcccccHHHHHHHHHHH--HCCCCeec-----ccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 9998764322111 111111122334445433 22223332 3599999999988 5888899999999999888
Q ss_pred CHHHHHHHHHHHHHHHhCCceEEEEecCc
Q 001291 1027 DARAAAIVMRTVRNTVDTGRTVVCTIHQP 1055 (1106)
Q Consensus 1027 D~~~~~~i~~~l~~~~~~g~tvi~~tH~~ 1055 (1106)
|.. +.++ .+.+|++++|+.
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~~ 165 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDSD 165 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCHH
T ss_pred cHH--------HHHh--cCeEEEEECCHH
Confidence 764 2232 378999999973
No 158
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.63 E-value=3.8e-17 Score=178.12 Aligned_cols=177 Identities=15% Similarity=0.054 Sum_probs=102.9
Q ss_pred ccceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCC
Q 001291 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1106)
..+++|+|+|+++++|++++|+||||||||||+++|+|.+ |.+.++ ..++.++|++|++ +++.+|
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-------~~~~~i~~v~~d~-~~~~l~ 74 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-------QRQRKVVILSQDR-FYKVLT 74 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-------GGGCSEEEEEGGG-GBCCCC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-------ccCCceEEEeCCc-CccccC
Confidence 4567999999999999999999999999999999999975 323233 1246799999985 677899
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCC
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1106)
+.|++.+.......... .. .+ ...+...++. |.+..+..+.
T Consensus 75 ~~~~~~~~~~~~~~~~~----~~-------------~~---------------~~~~~~~L~~--l~~~~~~~~~----- 115 (245)
T 2jeo_A 75 AEQKAKALKGQYNFDHP----DA-------------FD---------------NDLMHRTLKN--IVEGKTVEVP----- 115 (245)
T ss_dssp HHHHHHHHTTCCCTTSG----GG-------------BC---------------HHHHHHHHHH--HHTTCCEEEC-----
T ss_pred HhHhhhhhccCCCCCCc----cc-------------cc---------------HHHHHHHHHH--HHCCCCeecc-----
Confidence 99998775432111000 00 00 0111222332 2344455554
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHh-hcCeEEEecCC
Q 001291 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYN-LFDDIILLSDG 401 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~-~~D~vilL~~G 401 (1106)
.+|+||+||+.+ ++++.+|++++||||...+|.. +.++ . ..+|++.+|+...+.+ +++++ .+|
T Consensus 116 ~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~---~-~~~i~v~th~~~~~~r~~~r~~---~~G 179 (245)
T 2jeo_A 116 TYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM---F-HLRLFVDTDSDVRLSRRVLRDV---RRG 179 (245)
T ss_dssp CEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT---C-SEEEEEECCHHHHHHHHHHHHT---C--
T ss_pred cccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh---c-CeEEEEECCHHHHHHHHHHHHH---HcC
Confidence 499999999988 5888999999999998888763 2221 2 3445555565444433 34444 556
Q ss_pred eEEEEcCHHHHHH
Q 001291 402 QIVYQGPRELVLE 414 (1106)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1106)
+ +.+++.+
T Consensus 180 ~-----~~e~~~~ 187 (245)
T 2jeo_A 180 R-----DLEQILT 187 (245)
T ss_dssp ------CHHHHHH
T ss_pred C-----CHHHHHH
Confidence 4 5566654
No 159
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.61 E-value=3.4e-17 Score=186.58 Aligned_cols=174 Identities=16% Similarity=0.180 Sum_probs=121.4
Q ss_pred eEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh----------hcccceEEEEccCC
Q 001291 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ----------ETFARISGYCEQND 938 (1106)
Q Consensus 869 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----------~~~~~~~g~v~q~~ 938 (1106)
..+|+++ |.|.+|++++|+||||||||||+++|+|...++ .|.+.+.|.+... ..+.+.+.++.|.+
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~--~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~ 135 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD--IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSD 135 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS--EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTT
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC--EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCC
Confidence 4589999 999999999999999999999999999976643 6888888865211 12345577777753
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCC--cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCe
Q 001291 939 IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK--PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSI 1016 (1106)
Q Consensus 939 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~--~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~i 1016 (1106)
. ...+.+.-.. ....+.+.....+-. .+.+. +..||+|| ||+++| +.+|++
T Consensus 136 ~-----~~~~r~~~~~------------~~~~~ae~~~~~~~~vl~~ld~------~~~lS~g~-r~v~la---l~~p~~ 188 (347)
T 2obl_A 136 R-----PALERMKAAF------------TATTIAEYFRDQGKNVLLMMDS------VTRYARAA-RDVGLA---SGEPDV 188 (347)
T ss_dssp S-----CHHHHHHHHH------------HHHHHHHHHHTTTCEEEEEEET------HHHHHHHH-HHHHHH---TTCCCC
T ss_pred C-----CHHHHHHHHH------------HHHHHHHHHHhccccHHHHHhh------HHHHHHHH-HHHHHH---cCCCCc
Confidence 2 2222221000 000011111100100 00111 23599999 899999 688887
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh--CCc-----eEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCC
Q 001291 1017 IFMDEPTSGLDARAAAIVMRTVRNTVD--TGR-----TVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1106)
Q Consensus 1017 llLDEPTsgLD~~~~~~i~~~l~~~~~--~g~-----tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1082 (1106)
|+|||+.....+.++++++.+ .|. ||++++||++ ...||++++|.+ |+++..|++.
T Consensus 189 ------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~d-G~Ivl~~~l~ 251 (347)
T 2obl_A 189 ------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILD-GHIVLTRELA 251 (347)
T ss_dssp ------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCS-EEEEBCHHHH
T ss_pred ------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeC-cEEEEeCCHH
Confidence 999999999999999999864 477 9999999997 357999999975 7999988653
No 160
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.60 E-value=1.1e-16 Score=175.57 Aligned_cols=130 Identities=18% Similarity=0.248 Sum_probs=93.4
Q ss_pred EeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCcee-EEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHH
Q 001291 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-TGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYES 949 (1106)
Q Consensus 871 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~-~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~ 949 (1106)
+|+++| +++|++++|+||||||||||+++|+|... +. .|.|.++|.+.. |++|....
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~---------~~~~~~~~--------- 73 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIE---------YVFKHKKS--------- 73 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCC---------SCCCCSSS---------
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcce---------eecCCcce---------
Confidence 788999 89999999999999999999999999654 23 688998886642 22332110
Q ss_pred HHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 001291 950 LFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029 (1106)
Q Consensus 950 l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~ 1029 (1106)
+ .. . +.+++.. ..| |++||++|..+|++|++|||| |++
T Consensus 74 --~---v~------q-----------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~ 111 (261)
T 2eyu_A 74 --I---VN------Q-----------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 111 (261)
T ss_dssp --E---EE------E-----------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHH
T ss_pred --e---ee------H-----------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHH
Confidence 0 00 0 0112211 123 899999999999999999999 988
Q ss_pred HHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 1030 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 1030 ~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
+...+ ++. +..|.+|++++|+.+ ....+|+++.|.
T Consensus 112 ~~~~~---l~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~ 146 (261)
T 2eyu_A 112 TVETA---LRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 146 (261)
T ss_dssp HHHHH---HHH-HHTTCEEEEEECCSS--HHHHHHHHHHTS
T ss_pred HHHHH---HHH-HccCCEEEEEeCcch--HHHHHHHHhhhc
Confidence 86544 433 356999999999986 456778776553
No 161
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.59 E-value=8.7e-17 Score=172.88 Aligned_cols=152 Identities=17% Similarity=0.155 Sum_probs=92.5
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhhCC--CCCc---eeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHH
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGG---YITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLF 951 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g~--~~~~---~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~ 951 (1106)
+.|++|++++|+||||||||||+++|+|. .+++ ...+.+++++.+... .+.+++++|...+.+. |+.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-HHhhcEE
Confidence 47999999999999999999999999983 2211 123466676643210 0112222332221111 2222221
Q ss_pred HhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH-HHHHHHHHHHHHhc-------CCCeEEEeCCC
Q 001291 952 YSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST-EQRKRLTIAVELVA-------NPSIIFMDEPT 1023 (1106)
Q Consensus 952 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~-Gqrqrl~iA~aL~~-------~p~illLDEPT 1023 (1106)
+. ...+. .+++.+..+.+++. +|++|++||||
T Consensus 96 ~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 96 VA----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp EE----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred EE----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 10 01233 33444566666665 89999999999
Q ss_pred CCCCHH-------H-----HHHHHHHHHHHHh-CCceEEEEecCccH---HHHHhcCeEEEEecC
Q 001291 1024 SGLDAR-------A-----AAIVMRTVRNTVD-TGRTVVCTIHQPSI---DIFEAFDELFLMKRG 1072 (1106)
Q Consensus 1024 sgLD~~-------~-----~~~i~~~l~~~~~-~g~tvi~~tH~~~~---~~~~~~D~v~~l~~g 1072 (1106)
+++|+. . ...+++.|+++++ .|+|||+++|..+. .+...+|++++|++|
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 999984 2 2367777777654 49999999995431 256679999999874
No 162
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.59 E-value=7.5e-17 Score=183.77 Aligned_cols=181 Identities=13% Similarity=0.134 Sum_probs=125.4
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCC----------CccceEEEEcC
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF----------VPERTAAYISQ 233 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~----------~~~~~~~yv~Q 233 (1106)
...+|+++ +.|.+|+.++|+||||||||||+++|+|..+|+ .|.|.+.|++..+. ..++.+.+++|
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~ 133 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTT 133 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEEC
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEEC
Confidence 45699999 999999999999999999999999999999998 89999998652110 12356788887
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccccc
Q 001291 234 HDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICAD 313 (1106)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1106)
.+. ...+.+.-..... .+ .++ ....| .|
T Consensus 134 ~~~-----~~~~r~~~~~~~~----------~~--------------------------------ae~-~~~~~----~~ 161 (347)
T 2obl_A 134 SDR-----PALERMKAAFTAT----------TI--------------------------------AEY-FRDQG----KN 161 (347)
T ss_dssp TTS-----CHHHHHHHHHHHH----------HH--------------------------------HHH-HHTTT----CE
T ss_pred CCC-----CHHHHHHHHHHHH----------HH--------------------------------HHH-HHhcc----cc
Confidence 642 2233322111000 00 000 00001 01
Q ss_pred ccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCe-----EEEEEecChhHH
Q 001291 314 TMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGT-----AVISLLQPAPET 388 (1106)
Q Consensus 314 t~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t-----~ii~i~q~~~~~ 388 (1106)
..+--+....+|+|| |||++| +++|++ |+|||+.....+.+.++++....+++ +|++.+|+..
T Consensus 162 vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-- 229 (347)
T 2obl_A 162 VLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-- 229 (347)
T ss_dssp EEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--
T ss_pred HHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--
Confidence 000001123399999 899999 578777 99999999999999998764312355 6666778776
Q ss_pred HhhcCeEEEecCCeEEEEcCHHHH
Q 001291 389 YNLFDDIILLSDGQIVYQGPRELV 412 (1106)
Q Consensus 389 ~~~~D~vilL~~G~iv~~G~~~~~ 412 (1106)
..+||++++|.+|+++..|+..+.
T Consensus 230 ~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 230 DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred ChhhhheEEeeCcEEEEeCCHHHc
Confidence 578999999999999999987765
No 163
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.59 E-value=9e-16 Score=193.50 Aligned_cols=143 Identities=13% Similarity=0.126 Sum_probs=95.9
Q ss_pred ceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHH
Q 001291 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVY 947 (1106)
Q Consensus 868 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~ 947 (1106)
+..+++||+|++++|++++|+|||||||||||+++++..... . .|...... ...++++.+ .+..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a-q------~g~~vpa~--~~~i~~~d~---i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA-Q------IGSYVPAE--EATIGIVDG---IFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-H------HTCCBSSS--EEEEECCSE---EEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-h------cCccccch--hhhhhHHHH---HHHhCChH
Confidence 356899999999999999999999999999999997521100 0 01000000 001121111 11111111
Q ss_pred HHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 001291 948 ESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027 (1106)
Q Consensus 948 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD 1027 (1106)
+++ .. +.+.+|+|++|++.|+++ +.+|++|||||||+|||
T Consensus 727 d~l----------------------------------~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 DNI----------------------------------YK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred HHH----------------------------------HH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 111 11 124589999999999999 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHh-CCceEEEEecCccHHHHHhcC
Q 001291 1028 ARAAAIVM-RTVRNTVD-TGRTVVCTIHQPSIDIFEAFD 1064 (1106)
Q Consensus 1028 ~~~~~~i~-~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D 1064 (1106)
+.....+. .+++.+.+ .|+|||++||+++. .+.+|
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el--~~l~~ 803 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPPV--CELEK 803 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGGG--GGHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHH--HHHHh
Confidence 99888886 67777765 59999999999763 45554
No 164
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.58 E-value=1e-15 Score=193.55 Aligned_cols=89 Identities=13% Similarity=0.107 Sum_probs=69.8
Q ss_pred CCCChhhhhHHHHHHHH--hcCCccceeecCCCCCCHHHHHHH-HHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe
Q 001291 322 RGVSGGQKKRVTTGEMM--VGPALALFMDEISTGLDSSTTFQI-VNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al--~~~p~vllLDEptsgLD~~~~~~i-~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 398 (1106)
+++|+|+++++.+|+++ +.+|+++||||||+|||+.....+ ...++.+....+. ++++++|. .++..++|++..+
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~-~vl~aTH~-~el~~lad~~~~v 797 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGA-FCMFATHF-HELTALANQIPTV 797 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCC-EEEEEESC-GGGGGGGGTCTTE
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCC-EEEEEcCc-HHHHHHhccccee
Confidence 45899998888888888 999999999999999999999888 4566665443344 45556777 5677899999999
Q ss_pred cCCeEEEEcCHHHH
Q 001291 399 SDGQIVYQGPRELV 412 (1106)
Q Consensus 399 ~~G~iv~~G~~~~~ 412 (1106)
.+|++.+.++.+++
T Consensus 798 ~ng~v~~~~~~~~l 811 (934)
T 3thx_A 798 NNLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EeeEEEEEecCCcE
Confidence 99999988876554
No 165
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.57 E-value=1.5e-15 Score=183.73 Aligned_cols=155 Identities=13% Similarity=0.087 Sum_probs=111.8
Q ss_pred eEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHHHH
Q 001291 172 SGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAA 251 (1106)
Q Consensus 172 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~ 251 (1106)
++.+++|++++|+||||||||||++.++|...+. |+ +.+.|++|++. .++.++.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~----G~--------------~vi~~~~ee~~----~~l~~~~---- 328 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN----KE--------------RAILFAYEESR----AQLLRNA---- 328 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT----TC--------------CEEEEESSSCH----HHHHHHH----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC----CC--------------CEEEEEEeCCH----HHHHHHH----
Confidence 5689999999999999999999999999987653 32 12455666531 1122211
Q ss_pred HhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhhhhH
Q 001291 252 RCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKR 331 (1106)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGqkqR 331 (1106)
...+. + .+. +...|+....+..+. .|||||+||
T Consensus 329 ~~~g~-----------------------~------------------~~~-~~~~g~~~~~~~~p~-----~LS~g~~q~ 361 (525)
T 1tf7_A 329 YSWGM-----------------------D------------------FEE-MERQNLLKIVCAYPE-----SAGLEDHLQ 361 (525)
T ss_dssp HTTSC-----------------------C------------------HHH-HHHTTSEEECCCCGG-----GSCHHHHHH
T ss_pred HHcCC-----------------------C------------------HHH-HHhCCCEEEEEeccc-----cCCHHHHHH
Confidence 00000 0 011 223566655555554 399999999
Q ss_pred HHHHHHHhcCCccceeecCCCCCCHH-----HHHHHHHHHHHHHHhcCCeEEEEEecCh----------hHHHhhcCeEE
Q 001291 332 VTTGEMMVGPALALFMDEISTGLDSS-----TTFQIVNCFKQNIHINSGTAVISLLQPA----------PETYNLFDDII 396 (1106)
Q Consensus 332 vsia~al~~~p~vllLDEptsgLD~~-----~~~~i~~~l~~~~~~~~~t~ii~i~q~~----------~~~~~~~D~vi 396 (1106)
+.+|+++..+|+++++| ||+|||.. .+..+.+.++.+.. .+.++++ ++|.. ..+..++|+|+
T Consensus 362 ~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-~g~tvil-vsh~~~~~~~~~~~~~~l~~~~D~vi 438 (525)
T 1tf7_A 362 IIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-EEITGLF-TNTSDQFMGAHSITDSHISTITDTII 438 (525)
T ss_dssp HHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-TTCEEEE-EEECSSSSCCCSSCSSCCTTTCSEEE
T ss_pred HHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-CCCEEEE-EECcccccCcccccCcccceeeeEEE
Confidence 99999999999999999 99999999 88888888887653 4555555 55555 66778999999
Q ss_pred EecCCe
Q 001291 397 LLSDGQ 402 (1106)
Q Consensus 397 lL~~G~ 402 (1106)
+|.+|+
T Consensus 439 ~L~~ge 444 (525)
T 1tf7_A 439 LLQYVE 444 (525)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999886
No 166
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.55 E-value=1.4e-15 Score=189.28 Aligned_cols=128 Identities=21% Similarity=0.151 Sum_probs=94.1
Q ss_pred eEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHH
Q 001291 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYE 948 (1106)
Q Consensus 869 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e 948 (1106)
..+++|+||+ |++++|+|||||||||||++|+|.... ...|.+. +. ....+|+++| +++.+++.|
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~v----pa----~~~~i~~v~~---i~~~~~~~d 630 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSFV----PA----EEAHLPLFDG---IYTRIGASD 630 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCCB----SS----SEEEECCCSE---EEEECCC--
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCcee----eh----hccceeeHHH---hhccCCHHH
Confidence 4689999999 999999999999999999999984310 0112211 11 1234677666 233344444
Q ss_pred HHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH--hcCCCeEEEeCC---C
Q 001291 949 SLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVEL--VANPSIIFMDEP---T 1023 (1106)
Q Consensus 949 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL--~~~p~illLDEP---T 1023 (1106)
++. .++|+|+++++.+|+++ +.+|+++||||| |
T Consensus 631 ~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGT 668 (765)
T 1ewq_A 631 DLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGT 668 (765)
T ss_dssp ----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTS
T ss_pred HHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCC
Confidence 331 13799999999999999 999999999999 9
Q ss_pred CCCCHHHH-HHHHHHHHHHHhCCceEEEEecCcc
Q 001291 1024 SGLDARAA-AIVMRTVRNTVDTGRTVVCTIHQPS 1056 (1106)
Q Consensus 1024 sgLD~~~~-~~i~~~l~~~~~~g~tvi~~tH~~~ 1056 (1106)
++||..+. ..+.+.|.+ .|+|+|++||+.+
T Consensus 669 s~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~ 699 (765)
T 1ewq_A 669 SSLDGVAIATAVAEALHE---RRAYTLFATHYFE 699 (765)
T ss_dssp CHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH
T ss_pred CCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH
Confidence 99999875 567777765 4899999999975
No 167
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.55 E-value=1.8e-17 Score=176.10 Aligned_cols=145 Identities=14% Similarity=0.111 Sum_probs=110.6
Q ss_pred eeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCC--CCCCHHHHHHHhhhh
Q 001291 879 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHS--PFVTVYESLFYSAWL 956 (1106)
Q Consensus 879 i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~--~~~tv~e~l~~~~~~ 956 (1106)
.++|+++||+||||||||||+++|+|...+ .++|++|++.+. ..+|+.+++.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 468999999999999999999999985421 368899987765 4578988865431
Q ss_pred cCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH----HHHHHHHHHHhcCCCeEEEeCCCCC-------
Q 001291 957 RLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQ----RKRLTIAVELVANPSIIFMDEPTSG------- 1025 (1106)
Q Consensus 957 ~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gq----rqrl~iA~aL~~~p~illLDEPTsg------- 1025 (1106)
. .......+.+.++++.+++.+..+.. ...+|+|| +||+++|++++.+|.++++||||++
T Consensus 60 ~----~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 60 D----HPDAFDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp T----SGGGBCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred C----ChhhhhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 1 11111234466778888776655443 23589996 4788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhCCceEEEEecCc
Q 001291 1026 LDARAAAIVMRTVRNT-VDTGRTVVCTIHQP 1055 (1106)
Q Consensus 1026 LD~~~~~~i~~~l~~~-~~~g~tvi~~tH~~ 1055 (1106)
||+.....+.+.+++. .++|+|++.++|+.
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999998875 45699999999974
No 168
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.54 E-value=4.2e-16 Score=167.50 Aligned_cols=154 Identities=18% Similarity=0.121 Sum_probs=90.4
Q ss_pred EEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCC---C-CceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHHH
Q 001291 173 GIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS---L-KVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLA 248 (1106)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~---~-~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1106)
+-+++|++++|+||||||||||+++|+|.+.+. . ...|.|.+++.... ..+.+++++|+..+.+. ||.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---CHHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---CHHHHHHHHHHcCCCHH-HHhhcEE
Confidence 579999999999999999999999999965442 0 01345555553210 01123333333222221 2222222
Q ss_pred HHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhh
Q 001291 249 FAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQ 328 (1106)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGq 328 (1106)
+. +..++++
T Consensus 96 ~~-----------------------------------------------------------------------~~~~~~~ 104 (231)
T 4a74_A 96 VA-----------------------------------------------------------------------RAFNSNH 104 (231)
T ss_dssp EE-----------------------------------------------------------------------ECCSHHH
T ss_pred EE-----------------------------------------------------------------------ecCChHH
Confidence 11 1123332
Q ss_pred -hhHHHHHHHHhc-------CCccceeecCCCCCCHHH------------HHHHHHHHHHHHHhcCCeEEEEEecChh--
Q 001291 329 -KKRVTTGEMMVG-------PALALFMDEISTGLDSST------------TFQIVNCFKQNIHINSGTAVISLLQPAP-- 386 (1106)
Q Consensus 329 -kqRvsia~al~~-------~p~vllLDEptsgLD~~~------------~~~i~~~l~~~~~~~~~t~ii~i~q~~~-- 386 (1106)
++.+..+++++. +|+++++|||+++||+.. ..++++.|+++++..+ .+|+.++|...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g-~tvi~vtH~~~~~ 183 (231)
T 4a74_A 105 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYD-IAVFVTNQVQANG 183 (231)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEEECC---
T ss_pred HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCC-CeEEEEeecccCc
Confidence 333444444444 899999999999999842 2367777877766544 45555677444
Q ss_pred --HHHhhcCeEEEecCCe
Q 001291 387 --ETYNLFDDIILLSDGQ 402 (1106)
Q Consensus 387 --~~~~~~D~vilL~~G~ 402 (1106)
.+...+|+++.|++|+
T Consensus 184 g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 184 GHILAHSATLRVYLRKGK 201 (231)
T ss_dssp ------CCSEEEEEEECT
T ss_pred chhhHhhceEEEEEEecC
Confidence 4888999999998753
No 169
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.53 E-value=1.1e-16 Score=170.19 Aligned_cols=145 Identities=15% Similarity=0.106 Sum_probs=105.0
Q ss_pred EeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCC--CCCCHHHHHHHHHH
Q 001291 175 VKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHI--GEMTVRETLAFAAR 252 (1106)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~--~~lTV~E~l~f~~~ 252 (1106)
.++|++++|+||||||||||+++|+|.+.| .++|++|++.++ ..+|+++++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999998643 478999988766 56899888655311
Q ss_pred hcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhh----
Q 001291 253 CQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQ---- 328 (1106)
Q Consensus 253 ~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGq---- 328 (1106)
.. . . .....+...++.+++.+..+..+.+ +|+||
T Consensus 61 ~~---~------~----------------------------~~~~~~~~~l~~~~~~~~~~~~~~~-----~s~g~~~~~ 98 (211)
T 3asz_A 61 HP---D------A----------------------------FDLALYLEHAQALLRGLPVEMPVYD-----FRAYTRSPR 98 (211)
T ss_dssp SG---G------G----------------------------BCHHHHHHHHHHHHTTCCEEECCEE-----TTTTEECSS
T ss_pred Ch---h------h----------------------------hhHHHHHHHHHHHHcCCCcCCCccc-----CcccCCCCC
Confidence 00 0 0 0011234456777776655554433 88886
Q ss_pred hhHHHHHHHHhcCCccceeecCCCC-------CCHHHHHHHHHHHHHHHHhcCCeEEEEEec
Q 001291 329 KKRVTTGEMMVGPALALFMDEISTG-------LDSSTTFQIVNCFKQNIHINSGTAVISLLQ 383 (1106)
Q Consensus 329 kqRvsia~al~~~p~vllLDEptsg-------LD~~~~~~i~~~l~~~~~~~~~t~ii~i~q 383 (1106)
+||+++|++++.+|+++++||||++ ||+....++.+.+++.....+.+++.+.|+
T Consensus 99 ~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 99 RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQ 160 (211)
T ss_dssp CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4788999999999999999999999 999999999988876543345555444443
No 170
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.52 E-value=6.2e-16 Score=198.12 Aligned_cols=160 Identities=14% Similarity=0.066 Sum_probs=110.4
Q ss_pred ceeeeceeEEEeC-------ceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEE-EEcCCCC
Q 001291 165 LTILKDVSGIVKP-------GRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAA-YISQHDN 236 (1106)
Q Consensus 165 ~~iL~~vs~~i~~-------G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~-yv~Q~d~ 236 (1106)
..+++|+++.+++ |++++|+|||||||||||+.+ |.+.+ ...+| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~--------------------~aqiG~~Vpq~~~ 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV--------------------MAQMGCYVPAEVC 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--------------------HHTTTCCEESSEE
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--------------------HhheeEEeccCcC
Confidence 4689999999987 999999999999999999999 88643 11344 9999752
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccc
Q 001291 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMV 316 (1106)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1106)
.+||.|+|.. + +|+.+..+.-
T Consensus 828 ---~l~v~d~I~~--r-----------------------------------------------------ig~~d~~~~~- 848 (1022)
T 2o8b_B 828 ---RLTPIDRVFT--R-----------------------------------------------------LGASDRIMSG- 848 (1022)
T ss_dssp ---EECCCSBEEE--E-----------------------------------------------------CC---------
T ss_pred ---CCCHHHHHHH--H-----------------------------------------------------cCCHHHHhhc-
Confidence 4555554410 0 0111000000
Q ss_pred cCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHH-HHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001291 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ-IVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1106)
Q Consensus 317 g~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~-i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 395 (1106)
...+|++++ ++++|++++.+|+++|||||++|+|+..... ++..++.+.... +.++++++|....+..++|++
T Consensus 849 ----~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~-g~~vl~~TH~~el~~~~~d~~ 922 (1022)
T 2o8b_B 849 ----ESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETI-KCRTLFSTHYHSLVEDYSQNV 922 (1022)
T ss_dssp -----CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTS-CCEEEEECCCHHHHHHTSSCS
T ss_pred ----hhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHHHhCCcc
Confidence 112666665 4999999999999999999999999988544 567788775432 455666789989888899999
Q ss_pred EEecCCeEE--EEcCHHH
Q 001291 396 ILLSDGQIV--YQGPREL 411 (1106)
Q Consensus 396 ilL~~G~iv--~~G~~~~ 411 (1106)
.++ +|++. +.|++++
T Consensus 923 ~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 923 AVR-LGHMACMVENECED 939 (1022)
T ss_dssp SEE-EEEEEEC-------
T ss_pred eee-cCeEEEEEecCccc
Confidence 887 58887 5565543
No 171
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.51 E-value=3.2e-15 Score=187.03 Aligned_cols=143 Identities=13% Similarity=0.056 Sum_probs=94.4
Q ss_pred eEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHH
Q 001291 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYE 948 (1106)
Q Consensus 869 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e 948 (1106)
..+++|++++ ++|++++|+|||||||||||++|+|....+ . .|...... ...++++.| ++..+++.|
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~----q---~G~~vpa~--~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA----Y---IGSYVPAQ--KVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH----T---TTCCBSSS--EEEECCCCE---EEEEEC---
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH----h---cCcccchh--cccceeHHH---HHhhCCHHH
Confidence 4589999999 999999999999999999999999842100 0 11111111 123455544 223334444
Q ss_pred HHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 001291 949 SLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028 (1106)
Q Consensus 949 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~ 1028 (1106)
++..+ .+.+|+|+++ +..+...+.+|+++||||||+|+|+
T Consensus 662 ~l~~~---------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~ 701 (800)
T 1wb9_A 662 DLASG---------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTST 701 (800)
T ss_dssp -----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSS
T ss_pred HHHhh---------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCCh
Confidence 43110 1236777765 4445556899999999999999998
Q ss_pred HHHHHH-HHHHHHHHh-CCceEEEEecCccHHHHHhcCeE
Q 001291 1029 RAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDEL 1066 (1106)
Q Consensus 1029 ~~~~~i-~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v 1066 (1106)
.....+ +.+++.+.+ .|+++|++||+++. .+.+|++
T Consensus 702 ~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el--~~l~d~~ 739 (800)
T 1wb9_A 702 YDGLSLAWACAENLANKIKALTLFATHYFEL--TQLPEKM 739 (800)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEECSCGGG--GGHHHHS
T ss_pred hHHHHHHHHHHHHHHhccCCeEEEEeCCHHH--HHHhhhh
Confidence 766654 788888877 49999999999863 4567654
No 172
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.51 E-value=8.7e-16 Score=171.91 Aligned_cols=147 Identities=13% Similarity=0.129 Sum_probs=100.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh-------cc--cceEEEEccCCCCCCCCCHHHHHH
Q 001291 881 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE-------TF--ARISGYCEQNDIHSPFVTVYESLF 951 (1106)
Q Consensus 881 ~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~g~v~q~~~~~~~~tv~e~l~ 951 (1106)
+|++++|+||||||||||+++|+|...+ ..|+|.+.|.+.... .+ ++.++|++|++...|..|++|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 6899999999999999999999996543 258899999875321 11 235899999988888889999987
Q ss_pred HhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--eEEEeCCCCCCCHH
Q 001291 952 YSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDAR 1029 (1106)
Q Consensus 952 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~--illLDEPTsgLD~~ 1029 (1106)
+..... .+ ..+++..|+.+..+.. ++..++||++||||++.+|+ ++.|| |+++
T Consensus 179 ~~~~~~--~d----------~~llDt~G~~~~~~~~--------~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~---- 233 (304)
T 1rj9_A 179 AMKARG--YD----------LLFVDTAGRLHTKHNL--------MEELKKVKRAIAKADPEEPKEVWLVLD-AVTG---- 233 (304)
T ss_dssp HHHHHT--CS----------EEEECCCCCCTTCHHH--------HHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBC----
T ss_pred HHHhCC--CC----------EEEecCCCCCCchHHH--------HHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHH----
Confidence 642110 00 0112222332221111 45566999999999999999 44555 4444
Q ss_pred HHHHHHHHHHHHHhC-CceEEEEecCcc
Q 001291 1030 AAAIVMRTVRNTVDT-GRTVVCTIHQPS 1056 (1106)
Q Consensus 1030 ~~~~i~~~l~~~~~~-g~tvi~~tH~~~ 1056 (1106)
..+++.++++.+. |.|+|++||+..
T Consensus 234 --~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 234 --QNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp --THHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred --HHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 4455556665543 899999999853
No 173
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.51 E-value=6.4e-16 Score=173.36 Aligned_cols=157 Identities=15% Similarity=0.065 Sum_probs=83.9
Q ss_pred CceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCC-CCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCC
Q 001291 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVT 945 (1106)
Q Consensus 867 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~-~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~t 945 (1106)
+++.++++++|+| +|+|+||||||||++.|+|. .. +.+| +.++|.+.......+.+++++|.+.....+|
T Consensus 9 ~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 9 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp ---------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEEEE
T ss_pred CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 4567999999998 99999999999999999986 33 2356 7777765433212345789999877777788
Q ss_pred HHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC-
Q 001291 946 VYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS- 1024 (1106)
Q Consensus 946 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTs- 1024 (1106)
++|+..++.... . .+..+..++.+.+. .+... .++|+|||||+.+|||++ +|++||||+
T Consensus 80 v~Dt~g~~~~~~-~----~e~~~~l~~~l~~~------~~~~~-----~~~sgg~rqrv~~ara~~----ll~ldePt~~ 139 (301)
T 2qnr_A 80 VVDTPGYGDAIN-C----RDCFKTIISYIDEQ------FERYL-----HDESGLNRRHIIDNRVHC----CFYFISPFGH 139 (301)
T ss_dssp EEEEC----------------CTTHHHHHHHH------HHHHH-----HHHTSSCCTTCCCCCCCE----EEEEECSSSS
T ss_pred hhhhhhhhhhcC-c----HHHHHHHHHHHHHH------HHHHH-----HHhCHHhhhhhhhhhhhh----eeeeecCccc
Confidence 888876653221 0 00001111122111 12221 258999999999999886 999999998
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CceEEEEecCcc
Q 001291 1025 GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPS 1056 (1106)
Q Consensus 1025 gLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~ 1056 (1106)
|||+... +.++++.+. +.++|++.||+.
T Consensus 140 ~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 140 GLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 4999873 555555443 788999999974
No 174
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.51 E-value=3.1e-14 Score=141.91 Aligned_cols=80 Identities=19% Similarity=0.272 Sum_probs=66.6
Q ss_pred CCCCChhhhhHHHHH------HHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 321 RRGVSGGQKKRVTTG------EMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 321 ~rgLSGGqkqRvsia------~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
...||||||||++|| ++++.+|++++|||||+|||+.++..+.+.++++.. .+.+ |+.++|+. ++.+++|+
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~t-iiivsH~~-~~~~~~d~ 131 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQ-VILVSHDE-ELKDAADH 131 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-GSSE-EEEEESCG-GGGGGCSE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-cCCE-EEEEEChH-HHHHhCCE
Confidence 345999999999876 899999999999999999999999999999998754 3444 55566776 67889999
Q ss_pred EEEe--cCCeE
Q 001291 395 IILL--SDGQI 403 (1106)
Q Consensus 395 vilL--~~G~i 403 (1106)
+++| .+|..
T Consensus 132 ii~l~~~~g~s 142 (148)
T 1f2t_B 132 VIRISLENGSS 142 (148)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEcCCCeE
Confidence 9999 46643
No 175
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.50 E-value=5.2e-17 Score=169.27 Aligned_cols=158 Identities=21% Similarity=0.249 Sum_probs=104.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC-ccceEEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 001291 178 GRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV-PERTAAYISQHDNHIGEMTVRETLAFAARCQGV 256 (1106)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~ 256 (1106)
|++++|+||||||||||+++|+|.+. + +| |.++|....+.. .++.++|++|+. ... ++++. +..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l~---~~~-- 65 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPLS---RVG-- 65 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEEE---ECC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehhh---ccc--
Confidence 78999999999999999999999987 6 78 989887764332 256799999963 111 11110 000
Q ss_pred CcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhhhhHHH-HH
Q 001291 257 GTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVT-TG 335 (1106)
Q Consensus 257 ~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvs-ia 335 (1106)
..++ + ...+..+|. ....+|||||+++. ++
T Consensus 66 ------------------~~~~-~-----------------------------~~~~~~v~~-~~~~ls~~er~~~~~l~ 96 (189)
T 2i3b_A 66 ------------------LEPP-P-----------------------------GKRECRVGQ-YVVDLTSFEQLALPVLR 96 (189)
T ss_dssp ------------------CCCC-S-----------------------------SSCCEESSS-SEECHHHHHTTTTTTTC
T ss_pred ------------------ccCC-c-----------------------------cccccccce-EEEcchHHHHHHHHHHh
Confidence 0000 0 001123442 23359999999984 44
Q ss_pred H---HHhcCCccceeec--CCCCCCHHHHHHHHHHHHHHHHhcCCeEEE---EEecChhHHHhhcCeEEEecCCeEEEE
Q 001291 336 E---MMVGPALALFMDE--ISTGLDSSTTFQIVNCFKQNIHINSGTAVI---SLLQPAPETYNLFDDIILLSDGQIVYQ 406 (1106)
Q Consensus 336 ~---al~~~p~vllLDE--ptsgLD~~~~~~i~~~l~~~~~~~~~t~ii---~i~q~~~~~~~~~D~vilL~~G~iv~~ 406 (1106)
+ |+..+|++++||| |+..+|......+.+.++ ...++|+ +++|+.+ ..+.|+|..+.+|+++.-
T Consensus 97 ~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~-----~~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 97 NADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS-----TPGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp CCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH-----CSSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEEC
T ss_pred hhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh-----CCCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEe
Confidence 4 5799999999999 898899876555555544 2344553 3336653 356788888888888764
No 176
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.49 E-value=7.8e-16 Score=176.13 Aligned_cols=168 Identities=20% Similarity=0.193 Sum_probs=98.1
Q ss_pred eeeece-eEEEeCceEEEEEcCCCCCHHHHHHHHhCCC--CCC-CCceeE-EEECCccCCCCCccceEEEEcCCCCCCCC
Q 001291 166 TILKDV-SGIVKPGRLTLLLGPPSSGKTTLLLALAGKL--DPS-LKVSGR-VTYNGHNMDEFVPERTAAYISQHDNHIGE 240 (1106)
Q Consensus 166 ~iL~~v-s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~-~~~~G~-V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 240 (1106)
..|+++ ++.+++|++++|+||||||||||++.|++.. +|+ ....|+ |++++.+. + ..+.+++++|...+++.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~--~-~~~~i~~i~q~~~~~~~ 194 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--F-RPERIREIAQNRGLDPD 194 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC--C-CHHHHHHHHHTTTCCHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC--C-CHHHHHHHHHHcCCCHH
Confidence 356665 6899999999999999999999999999987 443 011367 78887543 1 12345566665433322
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCcc
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1106)
++.||+.+...
T Consensus 195 -~v~~ni~~~~~-------------------------------------------------------------------- 205 (349)
T 1pzn_A 195 -EVLKHIYVARA-------------------------------------------------------------------- 205 (349)
T ss_dssp -HHGGGEEEEEC--------------------------------------------------------------------
T ss_pred -HHhhCEEEEec--------------------------------------------------------------------
Confidence 44444332100
Q ss_pred CCCCChhhhhHHHHHHHHh-------cCCccceeecCCCCCCHHH------------HHHHHHHHHHHHHhcCCeEEEEE
Q 001291 321 RRGVSGGQKKRVTTGEMMV-------GPALALFMDEISTGLDSST------------TFQIVNCFKQNIHINSGTAVISL 381 (1106)
Q Consensus 321 ~rgLSGGqkqRvsia~al~-------~~p~vllLDEptsgLD~~~------------~~~i~~~l~~~~~~~~~t~ii~i 381 (1106)
--|++|++++.++++++ .+|+++++||||++||+.. ..++++.|+++++..+ ++|+++
T Consensus 206 --~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~-~tvii~ 282 (349)
T 1pzn_A 206 --FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYD-IAVFVT 282 (349)
T ss_dssp --CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTT-CEEEEE
T ss_pred --CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcC-cEEEEE
Confidence 01344455555555444 7899999999999999852 3556666777765444 455556
Q ss_pred ecChhHHHhhcCeEEEecCCeEEEEcC
Q 001291 382 LQPAPETYNLFDDIILLSDGQIVYQGP 408 (1106)
Q Consensus 382 ~q~~~~~~~~~D~vilL~~G~iv~~G~ 408 (1106)
+|........|++......|+++.++.
T Consensus 283 ~h~~~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 283 NQVQARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp EECC---------------CCCCCTTC
T ss_pred cccccccccccCCccccCCcceEeecC
Confidence 676665555566677777787765544
No 177
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.49 E-value=1.4e-16 Score=166.14 Aligned_cols=172 Identities=16% Similarity=0.138 Sum_probs=105.3
Q ss_pred CeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh-hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCC
Q 001291 882 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ-ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPP 960 (1106)
Q Consensus 882 Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 960 (1106)
|++++|+||||||||||+++|+|... . +| |.++|++..+ ...++.+||++|+.. ... +++ +.+...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~--~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g~~---~~l---~~~~~~- 67 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S--SG-VPVDGFYTEEVRQGGRRIGFDVVTLS--GTR---GPL---SRVGLE- 67 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H--TT-CCCEEEECCEEETTSSEEEEEEEETT--SCE---EEE---EECCCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c--CC-EEEcCEecchhHhhhceEEEEEEecc--cce---ehh---hccccc-
Confidence 78999999999999999999999643 1 46 7777766533 234677899999751 111 111 111100
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH-HHHH---HHhcCCCeEEEeC--CCCCCCHHHHHHH
Q 001291 961 EVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRL-TIAV---ELVANPSIIFMDE--PTSGLDARAAAIV 1034 (1106)
Q Consensus 961 ~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl-~iA~---aL~~~p~illLDE--PTsgLD~~~~~~i 1034 (1106)
.. + ...+..++..+ ..+|+|||+++ ++++ |++.+|+|||||| ||..+|......+
T Consensus 68 -~~---------------~--~~~~~~v~~~~-~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l 128 (189)
T 2i3b_A 68 -PP---------------P--GKRECRVGQYV-VDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAV 128 (189)
T ss_dssp -CC---------------S--SSCCEESSSSE-ECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHH
T ss_pred -CC---------------c--cccccccceEE-EcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHH
Confidence 00 0 00111222222 24899999988 4455 6789999999999 8999999866666
Q ss_pred HHHHHHHHhCCceEEE----EecCccHHHHHhcCeEEEEecCCEEEEEecCCCc--hhHHHHHHH
Q 001291 1035 MRTVRNTVDTGRTVVC----TIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHH--SCHLISYFE 1093 (1106)
Q Consensus 1035 ~~~l~~~~~~g~tvi~----~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~~--~~~~~~yf~ 1093 (1106)
.++++ ...++|+ ++|+.+. ...|++..+. +|+++....-.++ ..+++++.+
T Consensus 129 ~~~l~----~~~~~ilgti~vsh~~~~---~~vd~i~~~~-~~~i~~~~~~nr~~~~~~i~~~~~ 185 (189)
T 2i3b_A 129 RQTLS----TPGTIILGTIPVPKGKPL---ALVEEIRNRK-DVKVFNVTKENRNHLLPDIVTCVQ 185 (189)
T ss_dssp HHHHH----CSSCCEEEECCCCCSSCC---TTHHHHHTTC-CSEEEECCSSSGGGHHHHHHHHHT
T ss_pred HHHHh----CCCcEEEEEeecCCCCch---HHHHHHeecC-CcEEEEeChHhHHHHHHHHHHHHH
Confidence 55554 4445553 3498641 2446655554 5787776543322 344555543
No 178
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.49 E-value=3.1e-15 Score=164.04 Aligned_cols=133 Identities=17% Similarity=0.257 Sum_probs=93.7
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHH
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRE 245 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1106)
++|+++| +++|++++|+|||||||||||++|+|.++|+ .+|+|.++|.++. |++|+...+ +
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~---------~~~~~~~~~----v-- 75 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE---------YVFKHKKSI----V-- 75 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCC---------SCCCCSSSE----E--
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcce---------eecCCccee----e--
Confidence 4899999 8999999999999999999999999998762 1699999987643 333321000 0
Q ss_pred HHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCC
Q 001291 246 TLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVS 325 (1106)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLS 325 (1106)
.+ +.+|++. ..+
T Consensus 76 -------~q-------------------------------------------------~~~gl~~-----------~~l- 87 (261)
T 2eyu_A 76 -------NQ-------------------------------------------------REVGEDT-----------KSF- 87 (261)
T ss_dssp -------EE-------------------------------------------------EEBTTTB-----------SCH-
T ss_pred -------eH-------------------------------------------------HHhCCCH-----------HHH-
Confidence 00 0012211 012
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC
Q 001291 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1106)
Q Consensus 326 GGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 400 (1106)
|++||++|..+|+++++|||| |..+...+++ . +. .+.+ |++++|... +...+|+++.|..
T Consensus 88 -----~~~la~aL~~~p~illlDEp~---D~~~~~~~l~---~-~~-~g~~-vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 -----ADALRAALREDPDVIFVGEMR---DLETVETALR---A-AE-TGHL-VFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp -----HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH---H-HH-TTCE-EEEEECCSS-HHHHHHHHHHTSC
T ss_pred -----HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH---H-Hc-cCCE-EEEEeCcch-HHHHHHHHhhhcC
Confidence 899999999999999999999 9988765543 2 22 3445 455556644 6788999988854
No 179
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.49 E-value=5.3e-14 Score=166.07 Aligned_cols=74 Identities=16% Similarity=0.276 Sum_probs=63.4
Q ss_pred CCChhhhhHHHHHHHHh----cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe
Q 001291 323 GVSGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~----~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 398 (1106)
.||||||||++||++|+ .+|++++||||+++||+..+..+.+.|+++.. .++.+++++|. .+....||+++.|
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~~~ii~th~-~~~~~~~d~~~~~ 409 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFIVISLK-NTMFEKSDALVGV 409 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEEEECSC-HHHHTTCSEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc--CCCEEEEEECC-HHHHHhCCEEEEE
Confidence 49999999999999999 68999999999999999999999999987532 24555666776 5678899999998
Q ss_pred c
Q 001291 399 S 399 (1106)
Q Consensus 399 ~ 399 (1106)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 5
No 180
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.49 E-value=1.7e-15 Score=164.96 Aligned_cols=169 Identities=12% Similarity=0.050 Sum_probs=93.5
Q ss_pred eeece-eEEEeCceEEEEEcCCCCCHHHHHHHHh--CCCCCCCCceeEEEECCccCCCCCc--cceEEEEcCCCCCCCCC
Q 001291 167 ILKDV-SGIVKPGRLTLLLGPPSSGKTTLLLALA--GKLDPSLKVSGRVTYNGHNMDEFVP--ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 167 iL~~v-s~~i~~G~~~~llGp~GsGKSTLL~~L~--G~~~~~~~~~G~V~~~G~~~~~~~~--~~~~~yv~Q~d~~~~~l 241 (1106)
.|+++ .+-+++|++++|+||||||||||+++|+ |...+. +|.+.+++........ .+.++|++|+....+.+
T Consensus 18 ~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 94 (251)
T 2ehv_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG---EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKI 94 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSE
T ss_pred hHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCE
Confidence 34443 2479999999999999999999999999 653444 5666666543211000 12234444432112222
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccC
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
++.++........ . ... ....
T Consensus 95 ~~~~~~~~~~~~~----------------------------------------~-~~~-------------~~~~----- 115 (251)
T 2ehv_A 95 AIVDGVSSVVGLP----------------------------------------S-EEK-------------FVLE----- 115 (251)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred EEEEccccccccc----------------------------------------c-ccc-------------eecc-----
Confidence 2222111100000 0 000 0000
Q ss_pred CCCChhhhhHHHHHHHHhcCCccceeecCCCCCC-----HHHHHHHHHHHHHHHHhcCCeEEEEEecChhHH--------
Q 001291 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLD-----SSTTFQIVNCFKQNIHINSGTAVISLLQPAPET-------- 388 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD-----~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~-------- 388 (1106)
...+-++..+...+..-..+|+++++||||++|| ...+..+.+.++.+.. .+. +|+.++|...++
T Consensus 116 ~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~-~g~-tii~vtH~~~~~~~~~~~~~ 193 (251)
T 2ehv_A 116 DRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE-MGV-TTILTTEAPDPQHGKLSRYG 193 (251)
T ss_dssp --CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH-HCC-EEEEEECCC----CCSSSSS
T ss_pred CcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH-CCC-eEEEEECCCCCCcccccccC
Confidence 0123344444444444468999999999999997 5566667788877643 444 455567777777
Q ss_pred -Hhhc-CeEEEec
Q 001291 389 -YNLF-DDIILLS 399 (1106)
Q Consensus 389 -~~~~-D~vilL~ 399 (1106)
..+| |+|++|+
T Consensus 194 i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 194 IEEFIARGVIVLD 206 (251)
T ss_dssp CGGGGCSEEEEEE
T ss_pred hhhEeeeEEEEEe
Confidence 6788 9999995
No 181
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.48 E-value=1.5e-15 Score=173.89 Aligned_cols=142 Identities=20% Similarity=0.183 Sum_probs=93.9
Q ss_pred eeee-eeeeeCCeEEEEEcCCCCCHHHHHHhhhCCC--CC--ceeEEE-EEEcCccCChhcccceEEEEccCCCCCCCCC
Q 001291 872 LNGV-SGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TG--GYITGD-IRISGYPKKQETFARISGYCEQNDIHSPFVT 945 (1106)
Q Consensus 872 L~~v-s~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~--~~--~~~~G~-i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~t 945 (1106)
|+.+ .+.|++|++++|+||||||||||++.|++.. ++ |...|. +++++.+.. .++.+++++|...+.+. +
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-H
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-H
Confidence 4444 5899999999999999999999999999853 21 111256 888886531 11224444554332211 2
Q ss_pred HHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh-------cCCCeEE
Q 001291 946 VYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELV-------ANPSIIF 1018 (1106)
Q Consensus 946 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~-------~~p~ill 1018 (1106)
+.+|+.+. +. .-|.+|+|++.++++++ .+|++|+
T Consensus 196 v~~ni~~~-------------------------------~~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 196 VLKHIYVA-------------------------------RA--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HGGGEEEE-------------------------------EC--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HhhCEEEE-------------------------------ec--------CChHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 22222111 00 02567788888888887 6899999
Q ss_pred EeCCCCCCCHHH------------HHHHHHHHHHHHh-CCceEEEEecCcc
Q 001291 1019 MDEPTSGLDARA------------AAIVMRTVRNTVD-TGRTVVCTIHQPS 1056 (1106)
Q Consensus 1019 LDEPTsgLD~~~------------~~~i~~~l~~~~~-~g~tvi~~tH~~~ 1056 (1106)
+||||+++|+.. ...+++.|+++++ .|+|||+|+|...
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 999999999852 3455666666654 5899999999865
No 182
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.48 E-value=6.3e-15 Score=158.40 Aligned_cols=167 Identities=14% Similarity=0.128 Sum_probs=104.2
Q ss_pred EEeeeeee-eeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccc---eEEEEccCCCCCCCCC
Q 001291 870 VLLNGVSG-AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFAR---ISGYCEQNDIHSPFVT 945 (1106)
Q Consensus 870 ~~L~~vs~-~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~---~~g~v~q~~~~~~~~t 945 (1106)
+.|+++.+ .+++|++++|+||||||||||++.|++.... ..|.+.+.+.+.......+ ..++.+|....
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 82 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIE----- 82 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBT-----
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEcccCHHHHHHHHHHhcchHHHHhh-----
Confidence 35788885 8999999999999999999999999974321 1233443332221111000 01111110000
Q ss_pred HHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--eEEEeCCC
Q 001291 946 VYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPS--IIFMDEPT 1023 (1106)
Q Consensus 946 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~--illLDEPT 1023 (1106)
+++ . .++.....++ .. .. ....|.++.++...+.+...+|+ +|++||||
T Consensus 83 --~~~------~------------~~~~~~~~~~-~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 133 (235)
T 2w0m_A 83 --KKL------I------------IIDALMKEKE-DQ---WS-----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVS 133 (235)
T ss_dssp --TTE------E------------EEECCC-----CT---TB-----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGG
T ss_pred --CCE------E------------EEeccccccC-ce---ee-----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECch
Confidence 000 0 0000000000 00 00 12358999998888888888999 99999999
Q ss_pred CCC--CHHHHHHHHHHHHHHHh-CCceEEEEecCcc-------HHHHHhcCeEEEEecC
Q 001291 1024 SGL--DARAAAIVMRTVRNTVD-TGRTVVCTIHQPS-------IDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 1024 sgL--D~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~-------~~~~~~~D~v~~l~~g 1072 (1106)
+++ |+.....+++.|+++++ .|.|||+++|+.. ..+...||++++|++.
T Consensus 134 ~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 134 ALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 888 99889999999999864 5999999999972 1266789999999853
No 183
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.48 E-value=1.7e-15 Score=169.57 Aligned_cols=148 Identities=14% Similarity=0.124 Sum_probs=100.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---------cceEEEEcCCCCCCCCCCHHHHH
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---------ERTAAYISQHDNHIGEMTVRETL 247 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E~l 247 (1106)
+|++++|+||||||||||++.|+|.+.|+ +|+|.++|.++..... ++.++|++|++...|.+||+|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 69999999999999999999999999987 8999999988643221 24589999998888889999999
Q ss_pred HHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChh
Q 001291 248 AFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGG 327 (1106)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGG 327 (1106)
.++... +. +. .+++..|+.+..+.. ++..
T Consensus 178 ~~~~~~-~~----d~--------------------------------------~llDt~G~~~~~~~~--------~~eL 206 (304)
T 1rj9_A 178 QAMKAR-GY----DL--------------------------------------LFVDTAGRLHTKHNL--------MEEL 206 (304)
T ss_dssp HHHHHH-TC----SE--------------------------------------EEECCCCCCTTCHHH--------HHHH
T ss_pred HHHHhC-CC----CE--------------------------------------EEecCCCCCCchHHH--------HHHH
Confidence 875321 10 00 001112322211111 4555
Q ss_pred hhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC
Q 001291 328 QKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQP 384 (1106)
Q Consensus 328 qkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~ 384 (1106)
+|||++|||+++.+|+.++| .||+.+..++++.++.+.+..+.++++ ++|.
T Consensus 207 s~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~ii-vTh~ 257 (304)
T 1rj9_A 207 KKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVI-VTKL 257 (304)
T ss_dssp HHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEE-EECT
T ss_pred HHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEE-EECC
Confidence 68999999999999994444 455555555566666554434555554 5554
No 184
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.47 E-value=2.6e-14 Score=180.21 Aligned_cols=80 Identities=8% Similarity=0.053 Sum_probs=58.9
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHH-HHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE-ecC
Q 001291 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIV-NCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL-LSD 400 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~-~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil-L~~ 400 (1106)
.+|+|++|++.|+++ +.+|+++|||||++|||+.....+. ..++.+....+ .++++++|+. ++.+++|+.-- +.+
T Consensus 735 tfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g-~tvl~vTH~~-el~~l~~~~~~~v~n 811 (918)
T 3thx_B 735 TFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVK-SLTLFVTHYP-PVCELEKNYSHQVGN 811 (918)
T ss_dssp CHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTC-CEEEEECSCG-GGGGHHHHTTTTEEE
T ss_pred HhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcC-CeEEEEeCcH-HHHHHHhhcccceEE
Confidence 489999999999998 8999999999999999999999987 66666654334 4555567774 45566665421 334
Q ss_pred CeEEE
Q 001291 401 GQIVY 405 (1106)
Q Consensus 401 G~iv~ 405 (1106)
+++.+
T Consensus 812 ~~~~~ 816 (918)
T 3thx_B 812 YHMGF 816 (918)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44443
No 185
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.46 E-value=1.9e-15 Score=169.53 Aligned_cols=156 Identities=13% Similarity=0.128 Sum_probs=80.1
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCC-CCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCC
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGK-LDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~-~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1106)
++.+++++++.| +|+||||||||||++.|.|. +.|. +| |.++|.++......+.++|++|.+.....+|
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 456999999998 99999999999999999997 7676 78 8888876643222356899999888888899
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCC
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1106)
|.||..++..... .+. ....++.+. ...+..+ +
T Consensus 80 v~Dt~g~~~~~~~-------------~e~-----------------------~~~l~~~l~------~~~~~~~-----~ 112 (301)
T 2qnr_A 80 VVDTPGYGDAINC-------------RDC-----------------------FKTIISYID------EQFERYL-----H 112 (301)
T ss_dssp EEEEC-----------------------------------------------CTTHHHHHH------HHHHHHH-----H
T ss_pred hhhhhhhhhhcCc-------------HHH-----------------------HHHHHHHHH------HHHHHHH-----H
Confidence 9999887542210 000 000111111 1112333 3
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCC-CCHHHHHHHHHHHHHHHHhcCCeEEEEEecCh
Q 001291 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTG-LDSSTTFQIVNCFKQNIHINSGTAVISLLQPA 385 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~vllLDEptsg-LD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~ 385 (1106)
++|||||||+.+||+++ ++++||||++ ||+... +.++++.. ....+++...|+.
T Consensus 113 ~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~-~~~iilV~~K~Dl 167 (301)
T 2qnr_A 113 DESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHN-KVNIVPVIAKADT 167 (301)
T ss_dssp HHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTT-TSCEEEEECCGGG
T ss_pred HhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHh-cCCEEEEEEeCCC
Confidence 49999999999988875 9999999985 999873 44555432 2245555555654
No 186
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.46 E-value=1e-15 Score=187.57 Aligned_cols=165 Identities=18% Similarity=0.174 Sum_probs=110.4
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCC-CCCceeEEEECCccCCC------CCccceEEEEcCCCCCCCCCCHHHHHHHHHHh
Q 001291 181 TLLLGPPSSGKTTLLLALAGKLDP-SLKVSGRVTYNGHNMDE------FVPERTAAYISQHDNHIGEMTVRETLAFAARC 253 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~~~-~~~~~G~V~~~G~~~~~------~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 253 (1106)
++|+|||||||||||++|+|...| + +|.|+++|.++.. ...++.++|++|+..+++.+||+|++.++...
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~---sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~ 124 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRG---SGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA 124 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC----------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCC---CCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999877 5 8999999988521 12346799999999999999999999886532
Q ss_pred cCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhhhhHHH
Q 001291 254 QGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVT 333 (1106)
Q Consensus 254 ~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvs 333 (1106)
.+... .++| ++++.
T Consensus 125 ~~~~~---------------------------------------------------------------~~~s---~~~i~ 138 (608)
T 3szr_A 125 IAGEG---------------------------------------------------------------MGIS---HELIT 138 (608)
T ss_dssp HHCSS---------------------------------------------------------------SCCC---SCCEE
T ss_pred hcCCc---------------------------------------------------------------cccc---hHHHH
Confidence 21000 0011 11122
Q ss_pred HHHHHhcCCccceeecC------CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChh----HHHhh---c-----CeE
Q 001291 334 TGEMMVGPALALFMDEI------STGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAP----ETYNL---F-----DDI 395 (1106)
Q Consensus 334 ia~al~~~p~vllLDEp------tsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~----~~~~~---~-----D~v 395 (1106)
++.+....|+++++||| |+|||+....++.+.++++.......+++.++|+.+ ++..+ . ..|
T Consensus 139 l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI 218 (608)
T 3szr_A 139 LEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTI 218 (608)
T ss_dssp EEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEE
T ss_pred HHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceE
Confidence 22222357999999999 999999999999999998665555666777777654 22222 2 457
Q ss_pred EEecCCeEEEEcCHHHHHH
Q 001291 396 ILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1106)
+|+.++..+..|+.+++.+
T Consensus 219 ~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 219 GILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp EEEECGGGSSSSSTTCCCC
T ss_pred EEecchhhcCcccHHHHHH
Confidence 8888988888887655544
No 187
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.46 E-value=9.8e-14 Score=154.10 Aligned_cols=151 Identities=21% Similarity=0.204 Sum_probs=100.1
Q ss_pred eeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhc
Q 001291 878 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLR 957 (1106)
Q Consensus 878 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~ 957 (1106)
.+++|++++|+||||||||||++.|++... .|.+ +.|.+... ...+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~-~~g~~~~~---~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPD-LLEVGELP---TGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCC-TTCCCCCC---CCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCC-cCCCccCC---CccEEEEECCCCH---HHHHHHHH---HHH
Confidence 588999999999999999999999997332 2333 22433211 2245676554321 01111111 111
Q ss_pred CCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC--CCCHHHH---H
Q 001291 958 LPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS--GLDARAA---A 1032 (1106)
Q Consensus 958 ~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTs--gLD~~~~---~ 1032 (1106)
. +... ...+++++.+.+.+..+.. +..||+||+|++ ++++.+|++|++||||+ ++|.... .
T Consensus 92 ~--~~~~----~~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 A--HLSA----EERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp T--TSCH----HHHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred h--hcCh----hhhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 1 1111 2245677888877665543 346999998765 68889999999999999 9997444 7
Q ss_pred HHHHHHHHHH-hCCceEEEEecCcc
Q 001291 1033 IVMRTVRNTV-DTGRTVVCTIHQPS 1056 (1106)
Q Consensus 1033 ~i~~~l~~~~-~~g~tvi~~tH~~~ 1056 (1106)
.+++.|++++ +.|+|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 8888888886 45999999999875
No 188
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.45 E-value=1.1e-14 Score=181.02 Aligned_cols=132 Identities=16% Similarity=0.141 Sum_probs=95.2
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCC-CCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD-PSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1106)
..+++|+|+. |++++|+|||||||||||++|+|... +. .|.+. . ..+..++|++| +++.+|+
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v------p--a~~~~i~~v~~---i~~~~~~ 628 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV------P--AEEAHLPLFDG---IYTRIGA 628 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB------S--SSEEEECCCSE---EEEECCC
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee------e--hhccceeeHHH---hhccCCH
Confidence 4688999998 99999999999999999999999753 33 45431 0 01245777766 4555566
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
.|++. .|
T Consensus 629 ~d~l~-------------------------------------------------------------------------~g 635 (765)
T 1ewq_A 629 SDDLA-------------------------------------------------------------------------GG 635 (765)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHH-------------------------------------------------------------------------hc
Confidence 55542 24
Q ss_pred CChhhhhHHHHHHHH--hcCCccceeecC---CCCCCHHHH-HHHHHHHHHHHHhcCCeEEEEEecChhHHHhhc
Q 001291 324 VSGGQKKRVTTGEMM--VGPALALFMDEI---STGLDSSTT-FQIVNCFKQNIHINSGTAVISLLQPAPETYNLF 392 (1106)
Q Consensus 324 LSGGqkqRvsia~al--~~~p~vllLDEp---tsgLD~~~~-~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 392 (1106)
+|+|+++++.+++++ +.+|+++||||| |++||..+. ..+++.|++ .+.+ ++.++|.... .+++
T Consensus 636 ~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~-vl~~TH~~~l-~~~~ 704 (765)
T 1ewq_A 636 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAY-TLFATHYFEL-TALG 704 (765)
T ss_dssp CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCE-EEEECCCHHH-HTCC
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCE-EEEEeCCHHH-HHhh
Confidence 899999999999999 999999999999 999998875 567777764 3444 4556776544 4444
No 189
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.45 E-value=8.9e-15 Score=167.13 Aligned_cols=131 Identities=19% Similarity=0.252 Sum_probs=84.1
Q ss_pred EeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHH
Q 001291 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESL 950 (1106)
Q Consensus 871 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l 950 (1106)
+|+++ .+.+|++++|+||||||||||+++|+|...+. ..|.|...+.+... ......+++.|...
T Consensus 114 ~l~~l--~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e~-~~~~~~~~v~q~~~----------- 178 (356)
T 3jvv_A 114 VFKRV--SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIEF-VHESKKCLVNQREV----------- 178 (356)
T ss_dssp HHHHH--HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCCS-CCCCSSSEEEEEEB-----------
T ss_pred HHHHH--HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHHh-hhhccccceeeeee-----------
Confidence 34443 67899999999999999999999999954321 12344332222110 00111122222110
Q ss_pred HHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q 001291 951 FYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1030 (1106)
Q Consensus 951 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~ 1030 (1106)
+ ...++..+ +||+||..+|++|++|||| |.++
T Consensus 179 --------------------------------------~---~~~~~~~~----~La~aL~~~PdvillDEp~---d~e~ 210 (356)
T 3jvv_A 179 --------------------------------------H---RDTLGFSE----ALRSALREDPDIILVGEMR---DLET 210 (356)
T ss_dssp --------------------------------------T---TTBSCHHH----HHHHHTTSCCSEEEESCCC---SHHH
T ss_pred --------------------------------------c---cccCCHHH----HHHHHhhhCcCEEecCCCC---CHHH
Confidence 0 01133333 9999999999999999999 7666
Q ss_pred HHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 1031 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 1031 ~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
...+ .+++.+|.|||+|+|+.+. . +.+||++.|.
T Consensus 211 ~~~~----~~~~~~G~~vl~t~H~~~~-~-~~~dRli~l~ 244 (356)
T 3jvv_A 211 IRLA----LTAAETGHLVFGTLHTTSA-A-KTIDRVVDVF 244 (356)
T ss_dssp HHHH----HHHHHTTCEEEEEESCSSH-H-HHHHHHHHTS
T ss_pred HHHH----HHHHhcCCEEEEEEccChH-H-HHHHHHhhhc
Confidence 4443 3445679999999999873 3 7788887774
No 190
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.42 E-value=3e-13 Score=138.34 Aligned_cols=74 Identities=11% Similarity=0.184 Sum_probs=65.2
Q ss_pred CCCCHHHHHHHHHHHHHhc----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEE
Q 001291 994 NGLSTEQRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1069 (1106)
Q Consensus 994 ~~LS~Gqrqrl~iA~aL~~----~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l 1069 (1106)
..||||||||++||++|+. +|+++||||||+|||+.+...+.+.|+++.+ +.++|++||+.. +.+.||+++.+
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~~--~~~~ad~i~~v 139 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRDV--MMANADKIIGV 139 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCHH--HHTTCSEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecHH--HHHhCCEEEEE
Confidence 4699999999999999974 4699999999999999999999999998864 578999999963 57889999865
Q ss_pred e
Q 001291 1070 K 1070 (1106)
Q Consensus 1070 ~ 1070 (1106)
.
T Consensus 140 ~ 140 (173)
T 3kta_B 140 S 140 (173)
T ss_dssp E
T ss_pred E
Confidence 4
No 191
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.42 E-value=6.7e-15 Score=155.75 Aligned_cols=180 Identities=14% Similarity=0.101 Sum_probs=93.7
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCC---CceeEEEEEEcCc
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGDIRISGY 920 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~---~~~~~G~i~i~g~ 920 (1106)
+.++|+++.+.. .++++ +.+.+|..++|+|+||||||||++.|+|... ..+..|.+.+.+.
T Consensus 4 l~~~~~~~~~~~--------------~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~ 67 (210)
T 1pui_A 4 LNYQQTHFVMSA--------------PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL 67 (210)
T ss_dssp -------CEEEE--------------SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE
T ss_pred hhhhhhhheeec--------------CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE
Confidence 466777766641 25666 8899999999999999999999999999651 0122343322110
Q ss_pred c-CC-hhcccceEEEEccCCCCCCCCC---HHHHHHHhhh-hc--------CCCCCChHHHHHHHHHHHHHcCCCccc-c
Q 001291 921 P-KK-QETFARISGYCEQNDIHSPFVT---VYESLFYSAW-LR--------LPPEVNSETRKMFIEEVMELVELKPLR-Q 985 (1106)
Q Consensus 921 ~-~~-~~~~~~~~g~v~q~~~~~~~~t---v~e~l~~~~~-~~--------~~~~~~~~~~~~~v~~~l~~~~l~~~~-~ 985 (1106)
- .. ...+....|+.... .+... .+..+.+... .+ .+........+..+.+.++..++..+. .
T Consensus 68 ~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~ 144 (210)
T 1pui_A 68 FEVADGKRLVDLPGYGYAE---VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLL 144 (210)
T ss_dssp EEEETTEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEecCCEEEEECcCCcccc---cCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 0 00 00000001111100 00000 0111111000 00 000000111223345566666665321 2
Q ss_pred cccCCCCCCCCCHHHHHH-HHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCce
Q 001291 986 SLVGLPGVNGLSTEQRKR-LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1047 (1106)
Q Consensus 986 ~~~~~~g~~~LS~Gqrqr-l~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~t 1047 (1106)
.. ...+|+||||| +..+++++.+|.++++|||||++|..+...+++.|.++..+|.|
T Consensus 145 nK-----~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 145 TK-----ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp EC-----GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred ec-----ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 22 13489999999 89999999999999999999999999999999999988766544
No 192
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.41 E-value=2.1e-13 Score=146.37 Aligned_cols=171 Identities=16% Similarity=0.097 Sum_probs=106.3
Q ss_pred ceeeeceeE-EEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCH
Q 001291 165 LTILKDVSG-IVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~-~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1106)
.+.|+++.+ -+++|++++|+||||||||||++.|++...+. .|.|.|.+.+ . +.
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~----------------~------~~ 63 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTE----------------E------SR 63 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESS----------------S------CH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEcc----------------c------CH
Confidence 457888885 89999999999999999999999999887553 4555554321 1 22
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
.+........ +... + +... .+. . .++.....++ ...+ ...
T Consensus 64 ~~~~~~~~~~-~~~~--~---~~~~----------~~~------~---------~~~~~~~~~~-----~~~~----~~~ 103 (235)
T 2w0m_A 64 DSIIRQAKQF-NWDF--E---EYIE----------KKL------I---------IIDALMKEKE-----DQWS----LVN 103 (235)
T ss_dssp HHHHHHHHHT-TCCC--G---GGBT----------TTE------E---------EEECCC---------CTTB----CSS
T ss_pred HHHHHHHHHh-cchH--H---HHhh----------CCE------E---------EEeccccccC-----ceee----ecC
Confidence 2111110010 1000 0 0000 000 0 0000000001 0001 122
Q ss_pred CChhhhhHHHHHHHHhcCCc--cceeecCCCCC--CHHHHHHHHHHHHHHHHhcCCeEEEEEecCh--------hHHHhh
Q 001291 324 VSGGQKKRVTTGEMMVGPAL--ALFMDEISTGL--DSSTTFQIVNCFKQNIHINSGTAVISLLQPA--------PETYNL 391 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~--vllLDEptsgL--D~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~--------~~~~~~ 391 (1106)
.|.+|.++...+.+...+|+ ++++||||+++ |+....++++.|+++++.. +.+|+.++|.. +.+..+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~-~~~vi~~~h~~~~~~~~~~~~~~~~ 182 (235)
T 2w0m_A 104 LTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKW-NFTIYATSQYAITTSQAFGFGVEHV 182 (235)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHT-TEEEEEEEC-----------CHHHH
T ss_pred CCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhC-CCeEEEEeccCcccccccccchhee
Confidence 58999988888877778999 99999999888 9999999999999887644 45666677776 558889
Q ss_pred cCeEEEecCC
Q 001291 392 FDDIILLSDG 401 (1106)
Q Consensus 392 ~D~vilL~~G 401 (1106)
||+|++|...
T Consensus 183 ~d~vi~l~~~ 192 (235)
T 2w0m_A 183 ADGIIRFRRM 192 (235)
T ss_dssp CSEEEEEEEE
T ss_pred eeEEEEEEEE
Confidence 9999999754
No 193
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.40 E-value=2.9e-13 Score=163.42 Aligned_cols=75 Identities=21% Similarity=0.306 Sum_probs=69.6
Q ss_pred CC-CHHHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 995 GL-STEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 995 ~L-S~Gqrqrl~iA~aL~~~p--~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
.| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |+|||+|||+++ +...||++++|.+
T Consensus 396 ~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~~~ 472 (517)
T 4ad8_A 396 DVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKVEK 472 (517)
T ss_dssp SSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEEEC
T ss_pred hcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEec
Confidence 47 999999999999999999 99999999999999999999999999987 899999999985 4567999999964
Q ss_pred C
Q 001291 1072 G 1072 (1106)
Q Consensus 1072 g 1072 (1106)
+
T Consensus 473 ~ 473 (517)
T 4ad8_A 473 Q 473 (517)
T ss_dssp C
T ss_pred c
Confidence 3
No 194
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.38 E-value=2.8e-13 Score=150.41 Aligned_cols=153 Identities=12% Similarity=0.135 Sum_probs=98.9
Q ss_pred EEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHHHHHh
Q 001291 174 IVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARC 253 (1106)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 253 (1106)
-+++|++++|+||||||||||++.+++.+. .|.+ +.|.+.. ....+.|+..++. . +.+. .++
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~-~~g~~~~---~~~~v~~~~~e~~------~-~~~~--~r~ 87 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPD-LLEVGEL---PTGPVIYLPAEDP------P-TAIH--HRL 87 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCC-TTCCCCC---CCCCEEEEESSSC------H-HHHH--HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCC-cCCCccC---CCccEEEEECCCC------H-HHHH--HHH
Confidence 489999999999999999999999998653 3554 3343321 1346788877652 2 1111 011
Q ss_pred cCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhhhhHHH
Q 001291 254 QGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVT 333 (1106)
Q Consensus 254 ~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvs 333 (1106)
...+. . . .....+.+++.+++.+..+..+. .+|+||++++
T Consensus 88 ~~~g~-------------~------~---------------~~~~~~~~~~~l~l~~~~~~~~~-----~ls~g~~~~i- 127 (279)
T 1nlf_A 88 HALGA-------------H------L---------------SAEERQAVADGLLIQPLIGSLPN-----IMAPEWFDGL- 127 (279)
T ss_dssp HHHHT-------------T------S---------------CHHHHHHHHHHEEECCCTTSCCC-----TTSHHHHHHH-
T ss_pred HHHHh-------------h------c---------------ChhhhhhccCceEEeecCCCCcc-----cCCHHHHHHH-
Confidence 00000 0 0 00123446777888776665554 3999998876
Q ss_pred HHHHHhcCCccceeecCCC--CCCHHHH---HHHHHHHHHHHHhcCCeEEEEEecChhH
Q 001291 334 TGEMMVGPALALFMDEIST--GLDSSTT---FQIVNCFKQNIHINSGTAVISLLQPAPE 387 (1106)
Q Consensus 334 ia~al~~~p~vllLDEpts--gLD~~~~---~~i~~~l~~~~~~~~~t~ii~i~q~~~~ 387 (1106)
++++.+|+++++||||+ ++|.... .++++.|+++++..+.+ |+.++|....
T Consensus 128 --~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~t-vi~i~H~~~~ 183 (279)
T 1nlf_A 128 --KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCS-IVFLHHASKG 183 (279)
T ss_dssp --HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCE-EEEEEEC---
T ss_pred --HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCE-EEEEecCCCc
Confidence 57888999999999999 9997544 77888888887655555 4556666544
No 195
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.38 E-value=2.7e-14 Score=174.99 Aligned_cols=141 Identities=14% Similarity=0.160 Sum_probs=94.1
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC------hhcccceEEEEccCCCCCCCCCHHHHH
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK------QETFARISGYCEQNDIHSPFVTVYESL 950 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~------~~~~~~~~g~v~q~~~~~~~~tv~e~l 950 (1106)
++++. +||+||||||||||+++|+|...+ ..+|.|.++|.++. ...+++.+||++|++.+.+..||+|++
T Consensus 43 l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i 118 (608)
T 3szr_A 43 LALPA---IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEI 118 (608)
T ss_dssp CCCCC---EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTH
T ss_pred ccCCe---EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHH
Confidence 44443 999999999999999999997543 14799999987631 124567899999999888889999998
Q ss_pred HHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC------CC
Q 001291 951 FYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP------TS 1024 (1106)
Q Consensus 951 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEP------Ts 1024 (1106)
.+........ + . ++| ++++.++.+...+|+++|+||| |+
T Consensus 119 ~~~~~~~~~~------------------~-~-------------~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~ 163 (608)
T 3szr_A 119 NKAQNAIAGE------------------G-M-------------GIS---HELITLEISSRDVPDLTLIDLPGITRVAVG 163 (608)
T ss_dssp HHHHHHHHCS------------------S-S-------------CCC---SCCEEEEEEESSSCCEEEEECCC------C
T ss_pred HHHHHHhcCC------------------c-c-------------ccc---hHHHHHHhcCCCCCceeEeeCCCccccccC
Confidence 7643211000 0 0 011 0112222233458999999999 99
Q ss_pred CCCHHHHHHHHHHHHHHHhC--CceEEEEecCcc
Q 001291 1025 GLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPS 1056 (1106)
Q Consensus 1025 gLD~~~~~~i~~~l~~~~~~--g~tvi~~tH~~~ 1056 (1106)
|||+..+..+.++++++..+ +.++++++|+.+
T Consensus 164 ~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 164 NQPADIGYKIKTLIKKYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp CSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSC
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCceEEEeccch
Confidence 99999999999999997543 677889999876
No 196
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.38 E-value=1.6e-14 Score=168.12 Aligned_cols=163 Identities=12% Similarity=0.104 Sum_probs=92.7
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++++++.+ +++.+++|++|+| +|+|+||||||||+++|+|........|.+.+++.+
T Consensus 12 l~~~~l~~~y-------------~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~-- 70 (418)
T 2qag_C 12 VGFANLPNQV-------------YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK-- 70 (418)
T ss_dssp ---CCCCCCT-------------TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-------
T ss_pred EEEEecceeE-------------CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc--
Confidence 5667766544 2345899999998 999999999999999999965321112322222211
Q ss_pred hhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 001291 924 QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKR 1003 (1106)
Q Consensus 924 ~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqr 1003 (1106)
....+.+++++|.+...+.+|++|++.++.... .... ...+.+.+ +. .++.+++||
T Consensus 71 -t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~---~~~i~~~i------~~--------~~~~~l~qr 126 (418)
T 2qag_C 71 -TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD------NSNC---WQPVIDYI------DS--------KFEDYLNAE 126 (418)
T ss_dssp -CCEEEEEECC------CEEEEEEECC--------------------CHHHHHHH------HH--------HHHHHTTTS
T ss_pred -ceeeeeEEEEEecCCcccceeeeechhhhhhcc------chhh---HHHHHHHH------HH--------HHHHHHHHH
Confidence 112345799999887777789999887654321 0000 11121111 11 256677889
Q ss_pred HHHHHHHhcCCC---eEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCceEEEEecCcc
Q 001291 1004 LTIAVELVANPS---IIFMDEPT-SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1056 (1106)
Q Consensus 1004 l~iA~aL~~~p~---illLDEPT-sgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~ 1056 (1106)
++|||+++.+|+ +|++|||| .|||+... ++++.+. .+.+||+|+|..+
T Consensus 127 ~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~~v~iIlVinK~D 178 (418)
T 2qag_C 127 SRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-EKVNIIPLIAKAD 178 (418)
T ss_dssp CC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT-TTSEEEEEEESTT
T ss_pred HHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh-ccCcEEEEEEccc
Confidence 999999999999 99999999 69998763 3344444 3788888887543
No 197
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.38 E-value=5.6e-14 Score=175.87 Aligned_cols=156 Identities=12% Similarity=0.043 Sum_probs=100.9
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
..+++|+|+. ++|++++|+|||||||||||++|+|..... . . |..+.. ....++++.| ++..+++.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~-q-~------G~~vpa--~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA-Y-I------GSYVPA--QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH-T-T------TCCBSS--SEEEECCCCE---EEEEEC--
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH-h-c------Ccccch--hcccceeHHH---HHhhCCHH
Confidence 4689999999 999999999999999999999999964221 0 1 211110 0124555554 45555666
Q ss_pred HHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCC
Q 001291 245 ETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV 324 (1106)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgL 324 (1106)
|++..+. ..+
T Consensus 661 d~l~~~~----------------------------------------------------------------------stf 670 (800)
T 1wb9_A 661 DDLASGR----------------------------------------------------------------------STF 670 (800)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHhhh----------------------------------------------------------------------hhh
Confidence 6553311 125
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHH-HHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI-VNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 325 SGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i-~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
|+++++ ++.+...+.+|+++|||||++|+|+.....+ ...++.+.... +.+++.++|... ...++|++..+.+|++
T Consensus 671 ~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~-g~~vl~~TH~~e-l~~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 671 MVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKI-KALTLFATHYFE-LTQLPEKMEGVANVHL 747 (800)
T ss_dssp HHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTT-CCEEEEECSCGG-GGGHHHHSTTEEEEEE
T ss_pred hHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhcc-CCeEEEEeCCHH-HHHHhhhhhceEEEEE
Confidence 666654 4444456899999999999999998877775 56677665423 445555677764 4568998877788887
Q ss_pred EEEc
Q 001291 404 VYQG 407 (1106)
Q Consensus 404 v~~G 407 (1106)
.+..
T Consensus 748 ~~~~ 751 (800)
T 1wb9_A 748 DALE 751 (800)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6653
No 198
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.35 E-value=4.3e-14 Score=163.54 Aligned_cols=174 Identities=16% Similarity=0.133 Sum_probs=110.5
Q ss_pred ceEEeeeeeeeeeCCeE--EEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCC
Q 001291 868 KLVLLNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVT 945 (1106)
Q Consensus 868 ~~~~L~~vs~~i~~Ge~--~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~t 945 (1106)
+.+ |+++|+++++|++ +||+||||||||||+++|+|..- .|.. +.... ....++.++|++|++.+.+.+|
T Consensus 27 ~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~-~~~~~--~~~~~~~i~~v~Q~~~l~~~lt 98 (427)
T 2qag_B 27 SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEP-ATHTQ--PGVQLQSNTYDLQESNVRLKLT 98 (427)
T ss_dssp --C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------CC--SSCEEEEEEEEEEC--CEEEEE
T ss_pred Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCc-CCCCC--ccceEeeEEEEeecCccccccc
Confidence 345 9999999999999 99999999999999999999642 1211 11111 1122456899999988877889
Q ss_pred HHHHHHHhhhhcCCCCCChH----HHHHHHHHHHHHc-CCC----cccccc----cC--CCCCCCCCHHHHHHHHHHHHH
Q 001291 946 VYESLFYSAWLRLPPEVNSE----TRKMFIEEVMELV-ELK----PLRQSL----VG--LPGVNGLSTEQRKRLTIAVEL 1010 (1106)
Q Consensus 946 v~e~l~~~~~~~~~~~~~~~----~~~~~v~~~l~~~-~l~----~~~~~~----~~--~~g~~~LS~Gqrqrl~iA~aL 1010 (1106)
|.|++.|+.... ...... ..+...++.|+.. ++. ...+.. +. .|...+|+..+ +.|+++|
T Consensus 99 v~D~~~~g~~~~--~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L 173 (427)
T 2qag_B 99 IVSTVGFGDQIN--KEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKL 173 (427)
T ss_dssp EEEEECCCC-CC--HHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHT
T ss_pred hhhhhhhhhccc--cchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHH
Confidence 999886653210 000000 1223344555554 432 111211 10 12223577766 7899999
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCceEEEEecC
Q 001291 1011 VANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQ 1054 (1106)
Q Consensus 1011 ~~~p~illLDEPTsgLD~~~~~~i~~~l~~-~~~~g~tvi~~tH~ 1054 (1106)
..+++||++||||..|.+.....+.+.|++ +...|.+|+.++.+
T Consensus 174 ~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 174 DSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp CSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred hhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 999999999999999999999999999986 77789999988864
No 199
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.34 E-value=3.5e-12 Score=135.72 Aligned_cols=153 Identities=19% Similarity=0.148 Sum_probs=97.5
Q ss_pred Eeeeee-eeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHH
Q 001291 871 LLNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYES 949 (1106)
Q Consensus 871 ~L~~vs-~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~ 949 (1106)
.|+++. +.+++|++++|+||||||||||++.|++ ..+ .+.++++..+ . .+. +.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~---~~v~~i~~~~-----------------~----~~~-~~ 61 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LSG---KKVAYVDTEG-----------------G----FSP-ER 61 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HHC---SEEEEEESSC-----------------C----CCH-HH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-HcC---CcEEEEECCC-----------------C----CCH-HH
Confidence 466665 4799999999999999999999999998 221 1233333221 1 111 11
Q ss_pred HHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH--HHHHHHHHHHHhcC-CCeEEEeCCCCCC
Q 001291 950 LFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE--QRKRLTIAVELVAN-PSIIFMDEPTSGL 1026 (1106)
Q Consensus 950 l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~G--qrqrl~iA~aL~~~-p~illLDEPTsgL 1026 (1106)
+.- .... ..... +++++.+.+. .+|++ +++++..+++++.+ |+++++||||+.+
T Consensus 62 ~~~--~~~~-~~~~~-------~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 62 LVQ--MAET-RGLNP-------EEALSRFILF-------------TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp HHH--HHHT-TTCCH-------HHHHHHEEEE-------------CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred HHH--HHHh-cCCCh-------HHHhhcEEEE-------------ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence 110 0000 01111 1223222111 13444 46788999999986 9999999999999
Q ss_pred CHHH--------HHHHHHHHHHHHhC-CceEEEEecCccH------------HHHHhcCeEEEEecC
Q 001291 1027 DARA--------AAIVMRTVRNTVDT-GRTVVCTIHQPSI------------DIFEAFDELFLMKRG 1072 (1106)
Q Consensus 1027 D~~~--------~~~i~~~l~~~~~~-g~tvi~~tH~~~~------------~~~~~~D~v~~l~~g 1072 (1106)
|+.. ...+++.|++++++ |+|||+++|.... .+...||.+++|++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 119 RAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9733 24456667777654 8999999997641 356789999999864
No 200
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.34 E-value=3.7e-14 Score=151.28 Aligned_cols=127 Identities=17% Similarity=0.122 Sum_probs=83.8
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCH----HHHHHH
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTV----YESLFY 952 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv----~e~l~~ 952 (1106)
-..++|++++|+||||||||||+++|+|..++....|.|.+.+.+.... .++.++|++|++..++.+++ .|++.+
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 3567999999999999999999999999764323678899888765432 23457888886432222221 111100
Q ss_pred hhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH
Q 001291 953 SAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1032 (1106)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~ 1032 (1106)
. ... .+.| ++. +.+++..++++||| ||+.++.
T Consensus 90 ~-------------------------------~~~------yg~~---~~~---v~~~l~~G~illLD-----LD~~~~~ 121 (219)
T 1s96_A 90 F-------------------------------GNY------YGTS---REA---IEQVLATGVDVFLD-----IDWQGAQ 121 (219)
T ss_dssp T-------------------------------TEE------EEEE---HHH---HHHHHTTTCEEEEE-----CCHHHHH
T ss_pred H-------------------------------hcc------CCCC---HHH---HHHHHhcCCeEEEE-----ECHHHHH
Confidence 0 000 0111 221 34556678999999 9999999
Q ss_pred HHHHHHHHHHhCCceEEEEecCcc
Q 001291 1033 IVMRTVRNTVDTGRTVVCTIHQPS 1056 (1106)
Q Consensus 1033 ~i~~~l~~~~~~g~tvi~~tH~~~ 1056 (1106)
.+++.+. +|.||++++|+++
T Consensus 122 ~i~~~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 122 QIRQKMP----HARSIFILPPSKI 141 (219)
T ss_dssp HHHHHCT----TCEEEEEECSSHH
T ss_pred HHHHHcc----CCEEEEEECCCHH
Confidence 9998875 5899999999976
No 201
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.32 E-value=6.7e-14 Score=149.32 Aligned_cols=147 Identities=18% Similarity=0.226 Sum_probs=97.1
Q ss_pred EEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCH----HHHHHH
Q 001291 174 IVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTV----RETLAF 249 (1106)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV----~E~l~f 249 (1106)
..++|++++|+||||||||||+++|+|.++|+ ...|.|.+++.+.... .++.++|++|++..|+.+|+ .|++.+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 57899999999999999999999999998863 3589999998765432 23468899997543333332 111111
Q ss_pred HHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhhh
Q 001291 250 AARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQK 329 (1106)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGqk 329 (1106)
.|. +.|-.+
T Consensus 90 ------------------------------------------------------------------~~~-----~yg~~~ 98 (219)
T 1s96_A 90 ------------------------------------------------------------------FGN-----YYGTSR 98 (219)
T ss_dssp ------------------------------------------------------------------TTE-----EEEEEH
T ss_pred ------------------------------------------------------------------Hhc-----cCCCCH
Confidence 011 111112
Q ss_pred hHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeEEEEcCH
Q 001291 330 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPR 409 (1106)
Q Consensus 330 qRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~~ 409 (1106)
++ .+.++..++++||| ||+.++.++.+.+. .+.+|++++|+..++.. |+ +..| .++.
T Consensus 99 ~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~------~~~tI~i~th~~~~l~~---Rl--~~rG----~~~~ 155 (219)
T 1s96_A 99 EA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP------HARSIFILPPSKIELDR---RL--RGRG----QDSE 155 (219)
T ss_dssp HH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT------TCEEEEEECSSHHHHHH---HH--HTTS----CSCH
T ss_pred HH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc------CCEEEEEECCCHHHHHH---HH--HHcC----CCCH
Confidence 22 23445557999999 99999999988664 35667777787777655 42 7777 6788
Q ss_pred HHHHHHH
Q 001291 410 ELVLEFF 416 (1106)
Q Consensus 410 ~~~~~~f 416 (1106)
+++...+
T Consensus 156 e~i~~rl 162 (219)
T 1s96_A 156 EVIAKRM 162 (219)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776544
No 202
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.30 E-value=2.5e-14 Score=149.19 Aligned_cols=137 Identities=17% Similarity=0.142 Sum_probs=88.6
Q ss_pred EeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC-ccceEEEEcCCCCCCCCCCHHHHHHHHHHh
Q 001291 175 VKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV-PERTAAYISQHDNHIGEMTVRETLAFAARC 253 (1106)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 253 (1106)
+++|++++|+||||||||||+++|+|. ++ .|.|.++|.++.... ..+.++|++|+.. +.+||.|++.+.+..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 678999999999999999999999998 44 799999997653221 1234677777543 467899998875432
Q ss_pred cCC-CcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccc--cccccCccCCCCChhhhh
Q 001291 254 QGV-GTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICA--DTMVGDEMRRGVSGGQKK 330 (1106)
Q Consensus 254 ~~~-~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~--dt~vg~~~~rgLSGGqkq 330 (1106)
... +.. ...+. ++..+++.... +..+ ..+|+|++|
T Consensus 79 ~~~~~~~-----------~~~~~--------------------------~~~~~~l~~~~~~~~~~-----~~ls~~~~~ 116 (191)
T 1zp6_A 79 YAKEGYF-----------VILDG--------------------------VVRPDWLPAFTALARPL-----HYIVLRTTA 116 (191)
T ss_dssp HHHTSCE-----------EEECS--------------------------CCCTTTTHHHHTTCSCE-----EEEEEECCH
T ss_pred HhccCCe-----------EEEec--------------------------cCcHHHHHHHHhcCCCe-----EEEEecCCH
Confidence 100 000 00000 00001111111 1112 239999999
Q ss_pred HHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHH
Q 001291 331 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQ 368 (1106)
Q Consensus 331 Rvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~ 368 (1106)
|+.++|++..+|+++ +|+.....+.+.++.
T Consensus 117 ~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~ 146 (191)
T 1zp6_A 117 AEAIERCLDRGGDSL--------SDPLVVADLHSQFAD 146 (191)
T ss_dssp HHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhc
Confidence 999999999999877 587777666665543
No 203
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.30 E-value=2.6e-13 Score=154.99 Aligned_cols=59 Identities=10% Similarity=0.116 Sum_probs=43.5
Q ss_pred HHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCC
Q 001291 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1106)
Q Consensus 333 sia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 401 (1106)
+||++|..+|+++++|||+ |..+...+.+ .+. .|.+ +++++|..+.+ +.+||++.|..|
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~----~~~-~G~~-vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLALT----AAE-TGHL-VFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHHHH----HHH-TTCE-EEEEESCSSHH-HHHHHHHHTSCH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHHHH----HHh-cCCE-EEEEEccChHH-HHHHHHhhhcCc
Confidence 8999999999999999999 7666544433 222 3555 55566666655 889999998654
No 204
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.29 E-value=4e-13 Score=156.30 Aligned_cols=150 Identities=12% Similarity=0.067 Sum_probs=86.1
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCH
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1106)
.+.+++|+|+.| +|+||||||||||+++|+|...+... .|.+.+++.+ ....+.++|++|++..++.+||
T Consensus 23 ~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~---t~~~~~i~~v~q~~~~~~~Ltv 92 (418)
T 2qag_C 23 RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK---TVQVEQSKVLIKEGGVQLLLTI 92 (418)
T ss_dssp TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC--------CCEEEEEECC------CEEEEE
T ss_pred CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc---ceeeeeEEEEEecCCcccceee
Confidence 356999999998 99999999999999999999765311 2222222111 1112468999998888888999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
.||+.|+...... . . .....+++ + ..
T Consensus 93 ~Dt~g~~~~~~~~-~---------------------~--------------~~~i~~~i-~-----------------~~ 118 (418)
T 2qag_C 93 VDTPGFGDAVDNS-N---------------------C--------------WQPVIDYI-D-----------------SK 118 (418)
T ss_dssp EECC-----------------------------------------------CHHHHHHH-H-----------------HH
T ss_pred eechhhhhhccch-h---------------------h--------------HHHHHHHH-H-----------------HH
Confidence 9998886432100 0 0 00011111 0 12
Q ss_pred CChhhhhHHHHHHHHhcCCc---cceeecCC-CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEec
Q 001291 324 VSGGQKKRVTTGEMMVGPAL---ALFMDEIS-TGLDSSTTFQIVNCFKQNIHINSGTAVISLLQ 383 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~---vllLDEpt-sgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q 383 (1106)
++.++++|++||++++.+|+ ++++|||| +|||+... .+ ++.+. .+.++|+++++
T Consensus 119 ~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~-~~---lk~L~--~~v~iIlVinK 176 (418)
T 2qag_C 119 FEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI-EF---MKRLH--EKVNIIPLIAK 176 (418)
T ss_dssp HHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH-HH---HHHHT--TTSEEEEEEES
T ss_pred HHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH-HH---HHHHh--ccCcEEEEEEc
Confidence 66778889999999999999 99999999 69998773 33 33332 24555555544
No 205
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.28 E-value=1.1e-13 Score=139.72 Aligned_cols=78 Identities=18% Similarity=0.077 Sum_probs=66.3
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
+.+++++|+++++|++++|+||||||||||+++|+|.+ |. +|+|.++|.++......+ .|++|+..++ .+||.
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCC--Ccceeccccc-cCCcH
Confidence 35899999999999999999999999999999999999 76 899999998764211111 2899997777 89999
Q ss_pred HHHHH
Q 001291 245 ETLAF 249 (1106)
Q Consensus 245 E~l~f 249 (1106)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99965
No 206
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.28 E-value=1.2e-14 Score=151.61 Aligned_cols=169 Identities=10% Similarity=0.063 Sum_probs=107.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHHHHHhcCCC
Q 001291 178 GRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVG 257 (1106)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~ 257 (1106)
|++++|+||||||||||+++|++ +. +|.+.++|.++... ...++++|.+...+.+|+++++.+.++....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~---~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 71 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QL---DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLL- 71 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HS---SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHH-
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---cc---CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHh-
Confidence 78999999999999999999997 33 78999998765332 2346777765444566888888775432100
Q ss_pred cchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccC---ccCCCC--ChhhhhHH
Q 001291 258 TRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD---EMRRGV--SGGQKKRV 332 (1106)
Q Consensus 258 ~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~---~~~rgL--SGGqkqRv 332 (1106)
. +-....+...+. ...+.+ |+|+++++
T Consensus 72 ------------~------------------------------------~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~ 103 (189)
T 2bdt_A 72 ------------A------------------------------------QNDVVLDYIAFPDEAEALAQTVQAKVDDVEI 103 (189)
T ss_dssp ------------T------------------------------------TCEEEEESCCCHHHHHHHHHHHHHHCSSEEE
T ss_pred ------------c------------------------------------CCcEEEeeccCHHHHHHHHHHHHhcccCCCe
Confidence 0 000000000000 000124 88999998
Q ss_pred HHHH------HHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC-hhHHHhhcCeEEEecCCeEEE
Q 001291 333 TTGE------MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQP-APETYNLFDDIILLSDGQIVY 405 (1106)
Q Consensus 333 sia~------al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~-~~~~~~~~D~vilL~~G~iv~ 405 (1106)
.++. +++.+++...+|+ +||+..... ++.++.+.. .+ .+++..+|. ..++.+++|+|+ ++|+++.
T Consensus 104 ~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~-~~-~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~ 175 (189)
T 2bdt_A 104 RFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI-DE-RYFYNTSHLQPTNLNDIVKNLK--TNPRFIF 175 (189)
T ss_dssp EEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC-CT-TSEEECSSSCGGGHHHHHHHHH--HCGGGSC
T ss_pred EEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC-Cc-cEEEeCCCCChhhHHHHHHHHh--hCCcEEE
Confidence 8877 8999999988884 899988877 777776532 23 344545666 778899999998 9999999
Q ss_pred EcCHHHH
Q 001291 406 QGPRELV 412 (1106)
Q Consensus 406 ~G~~~~~ 412 (1106)
+|+++-+
T Consensus 176 ~~~~~~~ 182 (189)
T 2bdt_A 176 CMAGDPL 182 (189)
T ss_dssp C------
T ss_pred eecCCch
Confidence 9987654
No 207
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.26 E-value=5.6e-13 Score=153.69 Aligned_cols=128 Identities=19% Similarity=0.274 Sum_probs=88.9
Q ss_pred EeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHH
Q 001291 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESL 950 (1106)
Q Consensus 871 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l 950 (1106)
+|++++ +++|++++|+||||||||||+++|+|...+. ..|.|.+.+.+.. ...+..++|++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~-~~g~I~~~e~~~e-~~~~~~~~~v~Q~~------------ 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIE-YVFKHKKSIVNQRE------------ 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH-SCCEEEEEESSCC-SCCCCSSSEEEEEE------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC-CCcEEEEecccHh-hhhccCceEEEeee------------
Confidence 566765 7899999999999999999999999964321 1577866665543 12233456666630
Q ss_pred HHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q 001291 951 FYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1030 (1106)
Q Consensus 951 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~ 1030 (1106)
+++.. ..| +.+|+++|..+|++|++|||| |+++
T Consensus 191 ---------------------------~g~~~-----------~~~------~~~l~~~L~~~pd~illdE~~---d~e~ 223 (372)
T 2ewv_A 191 ---------------------------VGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLET 223 (372)
T ss_dssp ---------------------------BTTTB-----------SCS------HHHHHHHTTSCCSEEEESCCC---SHHH
T ss_pred ---------------------------cCCCH-----------HHH------HHHHHHHhhhCcCEEEECCCC---CHHH
Confidence 11110 125 469999999999999999999 7766
Q ss_pred HHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEE
Q 001291 1031 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 1067 (1106)
Q Consensus 1031 ~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~ 1067 (1106)
.. .+++. +..|.+|++|+|+.+ ..+.+||++
T Consensus 224 ~~---~~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~ 254 (372)
T 2ewv_A 224 VE---TALRA-AETGHLVFGTLHTNT--AIDTIHRIV 254 (372)
T ss_dssp HH---HHHHH-HTTTCEEEECCCCCS--HHHHHHHHH
T ss_pred HH---HHHHH-HhcCCEEEEEECcch--HHHHHHHHH
Confidence 43 34443 356899999999965 445566653
No 208
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.26 E-value=2.8e-15 Score=173.14 Aligned_cols=169 Identities=14% Similarity=0.017 Sum_probs=96.2
Q ss_pred eeeceeEEEeC--ceEEEEEcCCCCCHHHHHHHHhCCCCCCCCce----eEEEECCccCCCCCccceEEEEcCCCCCCCC
Q 001291 167 ILKDVSGIVKP--GRLTLLLGPPSSGKTTLLLALAGKLDPSLKVS----GRVTYNGHNMDEFVPERTAAYISQHDNHIGE 240 (1106)
Q Consensus 167 iL~~vs~~i~~--G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~----G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 240 (1106)
+.+.|++.|++ |+.++|+||||||||||+++|+|.++|+ + |+|.++++.. ..+..+..
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~-------------~~~~~~~~ 220 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLG-------------GDEQAMQY 220 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSS-------------SCTTSSCT
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcC-------------CCcccCCh
Confidence 45689999999 9999999999999999999999999986 6 7766542100 00001111
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCcc
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1106)
... +++.+...- . .........++. ++.....++.+
T Consensus 221 ~~~-~~I~~~~q~-----~-----~~~~~t~~~nl~-----------------------------~~~~~~~~~~~---- 256 (365)
T 1lw7_A 221 SDY-PQMALGHQR-----Y-----IDYAVRHSHKIA-----------------------------FIDTDFITTQA---- 256 (365)
T ss_dssp TTH-HHHHHHHHH-----H-----HHHHHHHCSSEE-----------------------------EESSCHHHHHH----
T ss_pred hHH-HHHHHHHHH-----H-----HHHHHhccCCEE-----------------------------EEeCCchHHHH----
Confidence 122 334432110 0 000000000000 00000001111
Q ss_pred CCCCChhhhhHHHHHHHHh-cCCccceeec---CC------CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHh
Q 001291 321 RRGVSGGQKKRVTTGEMMV-GPALALFMDE---IS------TGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYN 390 (1106)
Q Consensus 321 ~rgLSGGqkqRvsia~al~-~~p~vllLDE---pt------sgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~ 390 (1106)
..+|+|+++|..+++++. .+|+++|||| |+ .++|...+..+.+.|+++.+..+.++++ +.|+ .+..+
T Consensus 257 -~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ili-lde~-~~~~r 333 (365)
T 1lw7_A 257 -FCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIE-IESP-SYLDR 333 (365)
T ss_dssp -HHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEE-EECS-SHHHH
T ss_pred -HHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEE-eCCC-CHHHH
Confidence 126677788888888775 5999999999 65 5899999999999998765543445444 4565 34555
Q ss_pred hcCeEEEe
Q 001291 391 LFDDIILL 398 (1106)
Q Consensus 391 ~~D~vilL 398 (1106)
++|.+.++
T Consensus 334 ~~~~i~~i 341 (365)
T 1lw7_A 334 YNQVKAVI 341 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56655444
No 209
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.26 E-value=1.8e-14 Score=150.25 Aligned_cols=154 Identities=14% Similarity=0.028 Sum_probs=92.0
Q ss_pred eeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh-cccceEEEEccCCCCCCCCCHHHHHHHhhhh
Q 001291 878 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE-TFARISGYCEQNDIHSPFVTVYESLFYSAWL 956 (1106)
Q Consensus 878 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~ 956 (1106)
.+++|++++|+||||||||||+++|+|... .|.|.++|.+.... ...+.++|++|... +..++.+++.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~----~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPG----VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSS----SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccC----CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 367999999999999999999999999732 57889988653221 11223566666433 346788887664322
Q ss_pred cCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q 001291 957 RLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1036 (1106)
Q Consensus 957 ~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~ 1036 (1106)
........ .++.+++..++..+... ..+ +..+|+|++|+++++|++.++|+++ +|+...+.+++
T Consensus 79 ~~~~~~~~-----~~~~~~~~~~l~~~~~~--~~~-~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 79 YAKEGYFV-----ILDGVVRPDWLPAFTAL--ARP-LHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp HHHTSCEE-----EECSCCCTTTTHHHHTT--CSC-EEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred HhccCCeE-----EEeccCcHHHHHHHHhc--CCC-eEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 10000000 00000001111111100 001 1249999999999999999999876 68888888877
Q ss_pred HHHHHHhCCceEEEEec
Q 001291 1037 TVRNTVDTGRTVVCTIH 1053 (1106)
Q Consensus 1037 ~l~~~~~~g~tvi~~tH 1053 (1106)
.++.+...+..+|.++|
T Consensus 143 ~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 143 QFADLGAFEHHVLPVSG 159 (191)
T ss_dssp HTTCCGGGGGGEEECTT
T ss_pred HHhccCcccccEEECCC
Confidence 77665433334444443
No 210
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.26 E-value=1.1e-11 Score=126.60 Aligned_cols=88 Identities=24% Similarity=0.278 Sum_probs=67.4
Q ss_pred CCCChhhhhHHHHHHHHh----cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 001291 322 RGVSGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~----~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 397 (1106)
..||||||||++||++++ .+|++++|||||+|||+.+...+.+.|+++.. +++ +++++|+ ..+...+|+++.
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~-~ivith~-~~~~~~ad~i~~ 138 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQ-FIVITLR-DVMMANADKIIG 138 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSE-EEEECSC-HHHHTTCSEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCE-EEEEEec-HHHHHhCCEEEE
Confidence 459999999999999996 56799999999999999999999999988642 344 4555555 457789999987
Q ss_pred ec--CCeE-EEEcCHHHHH
Q 001291 398 LS--DGQI-VYQGPRELVL 413 (1106)
Q Consensus 398 L~--~G~i-v~~G~~~~~~ 413 (1106)
+. +|.. +.....++..
T Consensus 139 v~~~~g~s~~~~~~~~~~~ 157 (173)
T 3kta_B 139 VSMRDGVSKVVSLSLEKAM 157 (173)
T ss_dssp EEEETTEEEEEECCHHHHH
T ss_pred EEecCCEEEEEEEEcHHHH
Confidence 63 6643 3344444443
No 211
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.25 E-value=1.4e-13 Score=149.78 Aligned_cols=163 Identities=17% Similarity=0.155 Sum_probs=96.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh---CCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHHHHHh
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALA---GKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARC 253 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~---G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 253 (1106)
++++++|+||||||||||+++|+ |...++ +|+|.++|.+... ...+.+.+++|+..+++..|+.+++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999 998876 8998887754321 1123455667777778888999999875431
Q ss_pred -cCCCcchh-hhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhhhhH
Q 001291 254 -QGVGTRYE-MLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKR 331 (1106)
Q Consensus 254 -~~~~~~~~-~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGqkqR 331 (1106)
.+.+-..+ ........+..... ...+.-.+. ... .+.. +....+..++ .||| |
T Consensus 102 ~~~~~~il~g~~~~~~~~~~l~~~-~~~~~vi~L---~~~-------~~~~-----l~r~~~r~~~-----~lSg----r 156 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEALDKI-CEVDLVISL---NIP-------FETL-----KDRLSRRWIH-----PPSG----R 156 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHHHHTT-CCCCEEEEE---ECC-------HHHH-----HHHHHTEEEE-----TTTT----E
T ss_pred cCCCeEEEECCCCCHHHHHHHHhh-cCCCEEEEE---ECC-------HHHH-----HHHHHcCCCc-----CCCC----C
Confidence 00000000 00000000000000 000000000 000 0000 1112233343 3898 6
Q ss_pred HHHHHHH-hcCCccceee----cCCCCCCHHHHHHHHHHHHHHHH
Q 001291 332 VTTGEMM-VGPALALFMD----EISTGLDSSTTFQIVNCFKQNIH 371 (1106)
Q Consensus 332 vsia~al-~~~p~vllLD----EptsgLD~~~~~~i~~~l~~~~~ 371 (1106)
+ +++ +.+|++++|| |||++||..+...+.+.++.+..
T Consensus 157 v---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 157 V---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp E---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred c---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 6 677 9999999999 99999999999999888887643
No 212
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.24 E-value=9.1e-15 Score=152.47 Aligned_cols=170 Identities=15% Similarity=0.179 Sum_probs=104.8
Q ss_pred CeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCC
Q 001291 882 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPE 961 (1106)
Q Consensus 882 Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 961 (1106)
|++++|+||||||||||+++|++.. .|.+.++|.+.... ...|+++|.....+..++++++.+.+.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~-----~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL-----DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS-----SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc-----CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHhcC
Confidence 7899999999999999999999732 36688887543211 124566665433333467777655432110000
Q ss_pred CChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC--CHHHHHHHHHHH------HHhcCCCeEEEeCCCCCCCHHHHHH
Q 001291 962 VNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGL--STEQRKRLTIAV------ELVANPSIIFMDEPTSGLDARAAAI 1033 (1106)
Q Consensus 962 ~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~L--S~Gqrqrl~iA~------aL~~~p~illLDEPTsgLD~~~~~~ 1033 (1106)
. ..+++.+........ ...+ |+|++|++.++. +++.+|+...+|+ +||+.....
T Consensus 74 ~---------~~ild~~~~~~~~~~------~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~ 135 (189)
T 2bdt_A 74 N---------DVVLDYIAFPDEAEA------LAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL 135 (189)
T ss_dssp C---------EEEEESCCCHHHHHH------HHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH
T ss_pred C---------cEEEeeccCHHHHHH------HHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH
Confidence 0 000000000000000 0123 778888888888 8999999888884 899988888
Q ss_pred HHHHHHHHHhCCceEEEEecC-ccHHHHHhcCeEEEEecCCEEEEEecCC
Q 001291 1034 VMRTVRNTVDTGRTVVCTIHQ-PSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1106)
Q Consensus 1034 i~~~l~~~~~~g~tvi~~tH~-~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1082 (1106)
++.++.+.+.+.+||.++|+ ++ ++.+.||+|+ +.|+++..|++.
T Consensus 136 -~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~---~~g~~~~~~~~~ 180 (189)
T 2bdt_A 136 -VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK---TNPRFIFCMAGD 180 (189)
T ss_dssp -HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH---HCGGGSCC----
T ss_pred -HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh---hCCcEEEeecCC
Confidence 88888876667899999998 77 5778899998 568899888765
No 213
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.24 E-value=9.6e-12 Score=132.33 Aligned_cols=77 Identities=10% Similarity=0.013 Sum_probs=56.7
Q ss_pred CChhh--hhHHHHHHHHhcC-CccceeecCCCCCCHHH--------HHHHHHHHHHHHHhcCCeEEEEEecChh------
Q 001291 324 VSGGQ--KKRVTTGEMMVGP-ALALFMDEISTGLDSST--------TFQIVNCFKQNIHINSGTAVISLLQPAP------ 386 (1106)
Q Consensus 324 LSGGq--kqRvsia~al~~~-p~vllLDEptsgLD~~~--------~~~i~~~l~~~~~~~~~t~ii~i~q~~~------ 386 (1106)
.|+++ ++++..+++++.+ |+++++||||+++|... ..++++.|+++++..+.++++ ++|...
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~-~~h~~~~~~~~~ 163 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIV-INQVHFDSRTEM 163 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEE-EECSSSSCTTSS
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEE-EeeEEEcCCCCc
Confidence 45554 5678888899986 99999999999999743 245666688777655666554 555443
Q ss_pred -------HHHhhcCeEEEecCC
Q 001291 387 -------ETYNLFDDIILLSDG 401 (1106)
Q Consensus 387 -------~~~~~~D~vilL~~G 401 (1106)
.+...+|.|++|...
T Consensus 164 ~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 164 TKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCSCCCHHHHHTSSEEEEEEEC
T ss_pred cccCCCcceeecCcEEEEEEEe
Confidence 567899999999754
No 214
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.23 E-value=1.5e-12 Score=149.56 Aligned_cols=137 Identities=17% Similarity=0.112 Sum_probs=97.3
Q ss_pred EeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh-hcccceEEEEc-cCCCCCCCCCHHH
Q 001291 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ-ETFARISGYCE-QNDIHSPFVTVYE 948 (1106)
Q Consensus 871 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~g~v~-q~~~~~~~~tv~e 948 (1106)
+++++|+.+++|++++|+||||||||||+++|+|...+ ..|.|.++|...-. ...++.++|++ |++..
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~--~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF--DQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT--TSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC--CceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 45999999999999999999999999999999998764 37899999853211 12445678887 53321
Q ss_pred HHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 001291 949 SLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028 (1106)
Q Consensus 949 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~ 1028 (1106)
+++++..++-.|+.++..+|+.+++|||+.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012222356667777778899999999986
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecC
Q 001291 1029 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 1029 ~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~g 1072 (1106)
..+.+.|+.+.....|++.++|..+ ....+||+..|..+
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQ 302 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhc
Confidence 2455666666443457899999976 45678888877654
No 215
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.23 E-value=2.8e-12 Score=147.46 Aligned_cols=79 Identities=18% Similarity=0.137 Sum_probs=56.6
Q ss_pred eeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC-ccceEEEEc-CCCCC--CCCCC
Q 001291 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV-PERTAAYIS-QHDNH--IGEMT 242 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~-Q~d~~--~~~lT 242 (1106)
+++++|+.+++|++++|+||||||||||+++|+|.++|+ +|.|+++|..--... .++.++|++ |++.. ++..|
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t 240 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVT 240 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC----------CC
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCccccccccccC
Confidence 449999999999999999999999999999999999997 999999985311111 345788988 65432 23444
Q ss_pred HHHHHH
Q 001291 243 VRETLA 248 (1106)
Q Consensus 243 V~E~l~ 248 (1106)
++++|.
T Consensus 241 ~~~~i~ 246 (361)
T 2gza_A 241 AATLLR 246 (361)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 216
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.20 E-value=5.4e-14 Score=162.37 Aligned_cols=166 Identities=8% Similarity=0.009 Sum_probs=95.0
Q ss_pred eeeeeeeeeC--CeEEEEEcCCCCCHHHHHHhhhCCCCCceeE----EEEEEcCccCChhcccceEEEEccCCCCCCCCC
Q 001291 872 LNGVSGAFRP--GVLTALMGVSGAGKTTLMDVLAGRKTGGYIT----GDIRISGYPKKQETFARISGYCEQNDIHSPFVT 945 (1106)
Q Consensus 872 L~~vs~~i~~--Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~----G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~t 945 (1106)
.+.|++.|.+ |++++|+||||||||||+++|+|...+ .. |.+.+++... ..+.......
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~--~~~~e~G~i~i~~~~~-------------~~~~~~~~~~ 222 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT--TSAWEYGREFVFEKLG-------------GDEQAMQYSD 222 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC--EEECCTTHHHHHHSSS-------------SCTTSSCTTT
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC--CcchhhHHHHHHhhcC-------------CCcccCChhH
Confidence 3578999999 999999999999999999999997653 34 5554421100 0000001111
Q ss_pred HHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCC--CcccccccCCCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEeC-
Q 001291 946 VYESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL--KPLRQSLVGLPGVNGLSTEQRKRLTIAVELV-ANPSIIFMDE- 1021 (1106)
Q Consensus 946 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l--~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~-~~p~illLDE- 1021 (1106)
. +++.+... ........+.+.+.+ .+..+... ..+|+|++|+..+++++. .+|+++||||
T Consensus 223 ~-~~I~~~~q----------~~~~~~~t~~~nl~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~lllLdE~ 286 (365)
T 1lw7_A 223 Y-PQMALGHQ----------RYIDYAVRHSHKIAFIDTDFITTQA-----FCIQYEGKAHPFLDSMIKEYPFDVTILLKN 286 (365)
T ss_dssp H-HHHHHHHH----------HHHHHHHHHCSSEEEESSCHHHHHH-----HHHHHHSCCCHHHHHHHHHSCCSEEEEEEC
T ss_pred H-HHHHHHHH----------HHHHHHHhccCCEEEEeCCchHHHH-----HHHHHcCCCCHHHHHHHhhcCCCEEEECCC
Confidence 1 22322110 000000000000000 00001100 125667778888888775 5999999999
Q ss_pred --CC------CCCCHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 1022 --PT------SGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 1022 --PT------sgLD~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
|+ .++|+..+..+.+.|+++.+ .|.+||+++|. + .....+|++.+++
T Consensus 287 ~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 287 NTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp CCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred CCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 65 68999999999999988754 48999999985 3 3445666665554
No 217
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.20 E-value=2.2e-11 Score=140.78 Aligned_cols=76 Identities=25% Similarity=0.338 Sum_probs=67.1
Q ss_pred CCCHHHHHHH------HHHHHHhcC-CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEE
Q 001291 995 GLSTEQRKRL------TIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 1067 (1106)
Q Consensus 995 ~LS~Gqrqrl------~iA~aL~~~-p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~ 1067 (1106)
.|||||+||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++. .+.+||+|||+++ +...||+++
T Consensus 280 ~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~~~ 356 (371)
T 3auy_A 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADVII 356 (371)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSEEE
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCEEE
Confidence 4999999988 567889999 99999999999999999999999999874 3579999999985 467899999
Q ss_pred EEecCC
Q 001291 1068 LMKRGG 1073 (1106)
Q Consensus 1068 ~l~~gG 1073 (1106)
+|++.|
T Consensus 357 ~l~k~~ 362 (371)
T 3auy_A 357 NVKKDG 362 (371)
T ss_dssp EEEESS
T ss_pred EEEecC
Confidence 998544
No 218
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.19 E-value=1.1e-11 Score=134.02 Aligned_cols=151 Identities=19% Similarity=0.223 Sum_probs=83.8
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhhC--CCCC---ceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHH
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTG---GYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLF 951 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g--~~~~---~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~ 951 (1106)
+.+++|++++|+||||||||||++.|++ ...+ +...|.+++++.... ....-..
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~---------------------~~~~~~~ 77 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTF---------------------RPERLLA 77 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC---------------------CHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCc---------------------CHHHHHH
Confidence 5689999999999999999999999998 2321 112456677664310 0000000
Q ss_pred HhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH-HHHHHHHHh--cCCCeEEEeCCCCCCCH
Q 001291 952 YSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK-RLTIAVELV--ANPSIIFMDEPTSGLDA 1028 (1106)
Q Consensus 952 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq-rl~iA~aL~--~~p~illLDEPTsgLD~ 1028 (1106)
....+. ... +++++.+.+ . ...+..+.. .+.-+.+++ .+|++|++||||+.+|+
T Consensus 78 ~~~~~g----~~~-------~~~~~~~~~-----~-------~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 78 VAERYG----LSG-------SDVLDNVAY-----A-------RAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHTT----CCH-------HHHHHTEEE-----E-------ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHcC----CCH-------HHHhhCeEE-----E-------ecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 000000 000 112221110 0 114554433 233333444 48999999999999998
Q ss_pred H-------H-----HHHHHHHHHHHHh-CCceEEEEecCccHHHH-------------------HhcCeEEEEecC
Q 001291 1029 R-------A-----AAIVMRTVRNTVD-TGRTVVCTIHQPSIDIF-------------------EAFDELFLMKRG 1072 (1106)
Q Consensus 1029 ~-------~-----~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~-------------------~~~D~v~~l~~g 1072 (1106)
. + ...+++.|+++++ .|+|||+++|... +.. ..||.+++|+++
T Consensus 135 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~-~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 135 DYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA-QVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--------------------------CCTTCEEEEEEEC
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee-cCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 5 3 2345555666554 4999999999654 221 168999999864
No 219
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.19 E-value=5.5e-15 Score=167.21 Aligned_cols=156 Identities=14% Similarity=0.096 Sum_probs=95.9
Q ss_pred eEEEEEcCCCCCHHHHHHhhhCCCCC------ceeEEEEEEcCccCChh------------------cccceEEEE---c
Q 001291 883 VLTALMGVSGAGKTTLMDVLAGRKTG------GYITGDIRISGYPKKQE------------------TFARISGYC---E 935 (1106)
Q Consensus 883 e~~al~G~nGaGKSTLl~~l~g~~~~------~~~~G~i~i~g~~~~~~------------------~~~~~~g~v---~ 935 (1106)
++++|+|+||||||||++.|.|...+ .+..|.|.++|.++... .+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 68999999999999999999986421 12468888888765321 122335555 4
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCCCC--ChH-HHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhc
Q 001291 936 QNDIHSPFVTVYESLFYSAWLRLPPEV--NSE-TRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVA 1012 (1106)
Q Consensus 936 q~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~-~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~ 1012 (1106)
|+....+..++.|+..++......... ... .....++.+++.+++.+..+... ++|+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEEE
Confidence 554444455665554332100000000 000 00001112233344444444332 489999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCcc
Q 001291 1013 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1056 (1106)
Q Consensus 1013 ~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~ 1056 (1106)
+|+++ ||| ..+.+.|+++. .+.||++++|++.
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 99987 998 67888888874 5899999999753
No 220
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.19 E-value=1.8e-13 Score=140.06 Aligned_cols=112 Identities=19% Similarity=0.107 Sum_probs=71.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC------cc-ceEE----EEcCCCCCCCCCCHHHHH
Q 001291 179 RLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV------PE-RTAA----YISQHDNHIGEMTVRETL 247 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~-~~~~----yv~Q~d~~~~~lTV~E~l 247 (1106)
++++|+|+||||||||+++|+|.+++.....|.|.++|+++.+.. .+ +.++ +++|+..++ +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 579999999999999999999999875334799999998854332 12 2455 788865543 000
Q ss_pred HHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChh
Q 001291 248 AFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGG 327 (1106)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGG 327 (1106)
+ .. +. .+ ..+..++. .|+ ..||.+++ |||||
T Consensus 77 -------~--~~-----~~-----~a------------------------~l~~~i~~-~l~-g~dt~i~E----glSgG 107 (171)
T 2f1r_A 77 -------V--SE-----EE-----GN------------------------DLDWIYER-YLS-DYDLVITE----GFSKA 107 (171)
T ss_dssp -------C--CH-----HH-----HT------------------------CHHHHHHH-HTT-TCSEEEEE----SCGGG
T ss_pred -------C--Ch-----hh-----hh------------------------CHHHHHHh-hCC-CCCEEEEC----CcCCC
Confidence 0 00 00 00 01223333 123 46899987 59999
Q ss_pred hhhHHHHHHHHhcCCccc
Q 001291 328 QKKRVTTGEMMVGPALAL 345 (1106)
Q Consensus 328 qkqRvsia~al~~~p~vl 345 (1106)
||||++|||+++++|++.
T Consensus 108 q~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 108 GKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp CCCEEEECSSGGGGGGGC
T ss_pred CCcEEEEEecccCCCccC
Confidence 999999999999999874
No 221
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.19 E-value=2.9e-13 Score=143.02 Aligned_cols=66 Identities=9% Similarity=-0.038 Sum_probs=52.9
Q ss_pred HHHHHcCCccc-ccccccCccCCCCChhhhhH-HHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHH
Q 001291 301 YYLKVLGLDIC-ADTMVGDEMRRGVSGGQKKR-VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIH 371 (1106)
Q Consensus 301 ~~l~~lgL~~~-~dt~vg~~~~rgLSGGqkqR-vsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~ 371 (1106)
..++..+++.. ..+.+. .+|+||||| +..+++++.+|..+++|||||++|.....++++.|.+...
T Consensus 131 ~~~~~~~~~~~~v~nK~D-----~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 131 EWAVDSNIAVLVLLTKAD-----KLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHHTTCCEEEEEECGG-----GSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHHcCCCeEEEEeccc-----CCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 34556676642 234443 389999999 8999999999999999999999999999999999987653
No 222
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.16 E-value=5.6e-12 Score=143.13 Aligned_cols=121 Identities=19% Similarity=0.152 Sum_probs=80.7
Q ss_pred eeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCC-CCCCceeEEEEC-CccCCCCCccceEEEEcCCCCCCCCCCHHH
Q 001291 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD-PSLKVSGRVTYN-GHNMDEFVPERTAAYISQHDNHIGEMTVRE 245 (1106)
Q Consensus 168 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-~~~~~~G~V~~~-G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1106)
+++++.. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |..... ...+.++|++|+..++++.||+|
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC--------------CCCEEEECTTSCEEEECHHHHT
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccc-eEEEEEEEECCCCEecCcccHHH
Confidence 4555553 4799999999999999999999999998 87 8999987 655421 22457999999988888889988
Q ss_pred HHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCC
Q 001291 246 TLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVS 325 (1106)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLS 325 (1106)
+ + +.+. ... +....+.++++.+|+....|....+ +|
T Consensus 281 ~---~--l~~l----------~~~------------------------e~~~~~~e~l~~~gl~~f~~~~~~~-----lS 316 (358)
T 2rcn_A 281 F---G--LWHL----------EPE------------------------QITQGFVEFHDYLGHCKYRDCKHDA-----DP 316 (358)
T ss_dssp C---C--CCCC----------CHH------------------------HHHHTSGGGGGGTTCSSSTTCCSSS-----CT
T ss_pred h---h--hcCC----------CHH------------------------HHHHHHHHHHHHcCCchhcCCCccc-----CC
Confidence 4 1 1110 000 0111234457778888777776654 99
Q ss_pred hhhhhHHHHHHHH
Q 001291 326 GGQKKRVTTGEMM 338 (1106)
Q Consensus 326 GGqkqRvsia~al 338 (1106)
||+||++||+++
T Consensus 317 -G~~~r~ala~gl 328 (358)
T 2rcn_A 317 -GCAIREAVENGA 328 (358)
T ss_dssp -TCHHHHHHHHTS
T ss_pred -HHHHHHHHHhcC
Confidence 999999999865
No 223
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.16 E-value=2.4e-12 Score=148.97 Aligned_cols=161 Identities=17% Similarity=0.097 Sum_probs=98.9
Q ss_pred eeceeEEEeCceE--EEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHH
Q 001291 168 LKDVSGIVKPGRL--TLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRE 245 (1106)
Q Consensus 168 L~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1106)
|+++|+.+++|++ ++|+||||||||||+++|+|..- .|..... .......+.++|++|++.+++.+||.|
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~~---~~~~~~~~~i~~v~Q~~~l~~~ltv~D 101 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPATH---TQPGVQLQSNTYDLQESNVRLKLTIVS 101 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------------CCSSCEEEEEEEEEEC--CEEEEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCCC---CCccceEeeEEEEeecCccccccchhh
Confidence 9999999999999 99999999999999999999841 2321110 001112357999999988888999999
Q ss_pred HHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHc-CCc----cccccc----c
Q 001291 246 TLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVL-GLD----ICADTM----V 316 (1106)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~----~~~dt~----v 316 (1106)
|+.|+..... ..+... + ........+.+|... ++. ...|+. +
T Consensus 102 ~~~~g~~~~~---------~~~~~~----------i----------~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v 152 (427)
T 2qag_B 102 TVGFGDQINK---------EDSYKP----------I----------VEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCL 152 (427)
T ss_dssp EECCCC-CCH---------HHHSHH----------H----------HHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEE
T ss_pred hhhhhhcccc---------chhhhH----------H----------HHHHHHHHHHHHHHHHhhhhhhcccccccccEEE
Confidence 9877532110 000000 0 000111233334433 443 122322 1
Q ss_pred c--CccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHH
Q 001291 317 G--DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQ 368 (1106)
Q Consensus 317 g--~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~ 368 (1106)
. .+...+|+-.+ +.|+++|..+++|+++|+|+..|.+.....+.+.+++
T Consensus 153 ~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~ 203 (427)
T 2qag_B 153 YFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITS 203 (427)
T ss_dssp EEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHH
Confidence 1 01124577666 7899999999999999999999999888888888876
No 224
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.16 E-value=8.4e-14 Score=151.65 Aligned_cols=147 Identities=16% Similarity=0.180 Sum_probs=94.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHhhh---CCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhh-
Q 001291 881 PGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWL- 956 (1106)
Q Consensus 881 ~Ge~~al~G~nGaGKSTLl~~l~---g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~- 956 (1106)
++++++|+||||||||||+++|+ |... +..|++.++|.+... .....+++++|+....+..++.+++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 8754 346777766644211 1122344566777677777899988653210
Q ss_pred -----cCCCCCChHHHHHHHHHHHHH--cC------------CCcccccccCCCCCCCCCHHHHHHHHHHHHH-hcCCCe
Q 001291 957 -----RLPPEVNSETRKMFIEEVMEL--VE------------LKPLRQSLVGLPGVNGLSTEQRKRLTIAVEL-VANPSI 1016 (1106)
Q Consensus 957 -----~~~~~~~~~~~~~~v~~~l~~--~~------------l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL-~~~p~i 1016 (1106)
... ...... ..++.+.+. ++ +..+.++. +..||| |+ +++ +.+|++
T Consensus 103 ~~~~~il~-g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~-----~~~lSg----rv---~al~~~~P~~ 167 (246)
T 2bbw_A 103 RGQHWLLD-GFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRW-----IHPPSG----RV---YNLDFNPPHV 167 (246)
T ss_dssp TTSCEEEE-SCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE-----EETTTT----EE---EETTTSCCSS
T ss_pred CCCeEEEE-CCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC-----CcCCCC----Cc---cccccCCCcc
Confidence 000 111111 112222211 12 11122222 235888 55 677 999999
Q ss_pred EEEe----CCCCCCCHHHHHHHHHHHHHHHhCC
Q 001291 1017 IFMD----EPTSGLDARAAAIVMRTVRNTVDTG 1045 (1106)
Q Consensus 1017 llLD----EPTsgLD~~~~~~i~~~l~~~~~~g 1045 (1106)
++|| |||++||..+...+.+.++++.+++
T Consensus 168 lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 168 HGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp TTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred cccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 9999 9999999999999999998886543
No 225
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.15 E-value=5.2e-11 Score=140.42 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 995 GLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 995 ~LS~Gqrqrl~iA~aL~----~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
.||||||||++||++|+ .+|+++||||||++||+.....+.+.|+++.+.|.++|+|||++ ...+.||+++.+.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 59999999999999999 58999999999999999999999999999865688999999996 4578899999987
Q ss_pred c
Q 001291 1071 R 1071 (1106)
Q Consensus 1071 ~ 1071 (1106)
.
T Consensus 411 ~ 411 (430)
T 1w1w_A 411 R 411 (430)
T ss_dssp E
T ss_pred E
Confidence 4
No 226
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.13 E-value=2.8e-12 Score=150.13 Aligned_cols=82 Identities=17% Similarity=0.133 Sum_probs=69.6
Q ss_pred eeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCC------C---ccceEEEEcCCCCCC
Q 001291 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF------V---PERTAAYISQHDNHI 238 (1106)
Q Consensus 168 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~------~---~~~~~~yv~Q~d~~~ 238 (1106)
-+++|+.+++|++++|+||||||||||++.|+|++.+. +|+|.++|.+.... . .++.++|++|+...+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 36899999999999999999999999999999999886 89999987765321 0 135689999998778
Q ss_pred CCCCHHHHHHHHHH
Q 001291 239 GEMTVRETLAFAAR 252 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~ 252 (1106)
+.+||++++.++..
T Consensus 360 p~~tV~e~l~~a~~ 373 (503)
T 2yhs_A 360 SASVIFDAIQAAKA 373 (503)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 88999999998753
No 227
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.12 E-value=1.1e-11 Score=140.78 Aligned_cols=121 Identities=17% Similarity=0.110 Sum_probs=82.4
Q ss_pred eeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEc-CccCChhcccceEEEEccCCCCCCCCCHHHHHH
Q 001291 873 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRIS-GYPKKQETFARISGYCEQNDIHSPFVTVYESLF 951 (1106)
Q Consensus 873 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~-g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~ 951 (1106)
++|++. .+|++++|+||||||||||+++|+|.... +..|+|.++ |.+.. ....+.+++++|+..+++..+++|+
T Consensus 207 ~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~-- 281 (358)
T 2rcn_A 207 KPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE-ILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREF-- 281 (358)
T ss_dssp HHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC-CCCC--------------CCCEEEECTTSCEEEECHHHHTC--
T ss_pred HHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc-cccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHh--
Confidence 344443 37999999999999999999999997641 247888876 65442 2345678999998877777788873
Q ss_pred HhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH
Q 001291 952 YSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVEL 1010 (1106)
Q Consensus 952 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL 1010 (1106)
+. .....++....+.++++.+++.++.+... .+|| ||+||++||+++
T Consensus 282 -~l-----~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 -GL-----WHLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp -CC-----CCCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred -hh-----cCCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 11 12334455566788899999988877664 3699 999999999875
No 228
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.11 E-value=4.2e-12 Score=141.13 Aligned_cols=134 Identities=16% Similarity=0.177 Sum_probs=84.1
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQG 255 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 255 (1106)
+++.+++|.||+|||||||.+.|++.+.+ .| . ..+.+.+|+|++.+++ .++++|+.++..-.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g------~------~~~~~~iv~~D~f~~~-~~~~~~l~~~~~~~~ 91 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KY------G------GEKSIGYASIDDFYLT-HEDQLKLNEQFKNNK 91 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HH------G------GGSCEEEEEGGGGBCC-HHHHHHHHHHTTTCG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cC------C------CCceEEEeccccccCC-hHHHHHHhccccccc
Confidence 36789999999999999999999999865 22 0 1234566699987775 488999988631100
Q ss_pred CCcchhhhhHhhHHHHhcCCCCCC-ChHHHHHhhcchhhhHhHHHHHHHHHcCCc--c--cccccccCccCCCCChhhhh
Q 001291 256 VGTRYEMLTELSRREKAAGIKPDP-DIDVFMKAASTEGEEANVITDYYLKVLGLD--I--CADTMVGDEMRRGVSGGQKK 330 (1106)
Q Consensus 256 ~~~~~~~~~~~~~~ek~~~~~p~~-d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~--~~dt~vg~~~~rgLSGGqkq 330 (1106)
.-.. .+ .|+. |. ......++.+.-. . .....+. .....+||||+|
T Consensus 92 l~~~-------------~g-~p~a~d~---------------~~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~ 141 (290)
T 1odf_A 92 LLQG-------------RG-LPGTHDM---------------KLLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGD 141 (290)
T ss_dssp GGSS-------------SC-STTSBCH---------------HHHHHHHHHHTC------CCEEEEC-CEETTHHHHTCE
T ss_pred hhhh-------------cc-CcchhHH---------------HHHHHHHHHhhccCccccCcceeec-cCccccCCcccc
Confidence 0000 00 0111 11 1122334444322 0 0111121 223569999999
Q ss_pred HHHHH--HHHhcCCccceeecCCCCCCHHH
Q 001291 331 RVTTG--EMMVGPALALFMDEISTGLDSST 358 (1106)
Q Consensus 331 Rvsia--~al~~~p~vllLDEptsgLD~~~ 358 (1106)
|+.+| +++ +|+|+|+|||+++||+..
T Consensus 142 R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 142 RCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp ECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred ccccccceEc--CCCEEEEeCccccCCccc
Confidence 99987 555 999999999999999864
No 229
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.11 E-value=6.2e-12 Score=144.97 Aligned_cols=131 Identities=17% Similarity=0.248 Sum_probs=92.2
Q ss_pred eeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHH
Q 001291 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRET 246 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (1106)
+|++++ +++|++++|+|||||||||||++|+|.++|+ .+|+|.+.|.++. ...+..++||+|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e-~~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-YVFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCC-SCCCCSSSEEEEEE-----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHh-hhhccCceEEEeee-----------
Confidence 677776 7899999999999999999999999998763 1699987776553 22344567777741
Q ss_pred HHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCCh
Q 001291 247 LAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSG 326 (1106)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSG 326 (1106)
+ |++ . ..+
T Consensus 191 ---------~--------------------------------------------------g~~----~-------~~~-- 198 (372)
T 2ewv_A 191 ---------V--------------------------------------------------GED----T-------KSF-- 198 (372)
T ss_dssp ---------B--------------------------------------------------TTT----B-------SCS--
T ss_pred ---------c--------------------------------------------------CCC----H-------HHH--
Confidence 0 000 0 014
Q ss_pred hhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEec
Q 001291 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1106)
Q Consensus 327 GqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 399 (1106)
+.+|+++|..+|+++++|||+ |..+.... ++. + ..+.+ +++++|. .++.+.+|+++.|.
T Consensus 199 ----~~~l~~~L~~~pd~illdE~~---d~e~~~~~---l~~-~-~~g~~-vi~t~H~-~~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 ----ADALRAALREDPDVIFVGEMR---DLETVETA---LRA-A-ETGHL-VFGTLHT-NTAIDTIHRIVDIF 257 (372)
T ss_dssp ----HHHHHHHTTSCCSEEEESCCC---SHHHHHHH---HHH-H-TTTCE-EEECCCC-CSHHHHHHHHHHTS
T ss_pred ----HHHHHHHhhhCcCEEEECCCC---CHHHHHHH---HHH-H-hcCCE-EEEEECc-chHHHHHHHHHHhc
Confidence 468999999999999999999 77664443 333 2 23444 5555665 44778888887764
No 230
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.11 E-value=2.2e-11 Score=131.66 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=27.2
Q ss_pred EEEeCceEEEEEcCCCCCHHHHHHHHhCC
Q 001291 173 GIVKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
+-+++|++++|+||||||||||++.|++.
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 56899999999999999999999999993
No 231
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.10 E-value=4.9e-12 Score=148.02 Aligned_cols=152 Identities=13% Similarity=0.124 Sum_probs=99.1
Q ss_pred eeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh-------c--ccceEEEEccCCCCCCC
Q 001291 873 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE-------T--FARISGYCEQNDIHSPF 943 (1106)
Q Consensus 873 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~--~~~~~g~v~q~~~~~~~ 943 (1106)
+++||++++|++++|+|+||||||||+++|+|.... ..|.|.++|.+.... . .++.++|++|+....+.
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~--~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~ 361 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ--QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhh--cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHH
Confidence 578999999999999999999999999999996432 257899987664321 1 24468999999877777
Q ss_pred CCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh-cCCC-eEEEeC
Q 001291 944 VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELV-ANPS-IIFMDE 1021 (1106)
Q Consensus 944 ~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~-~~p~-illLDE 1021 (1106)
.|+++++.+..... .+. -+++..|..+... .|-..-+|++.+++++. ..|. +||...
T Consensus 362 ~tV~e~l~~a~~~~--~Dv----------VLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvLD 420 (503)
T 2yhs_A 362 SVIFDAIQAAKARN--IDV----------LIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTID 420 (503)
T ss_dssp HHHHHHHHHHHHTT--CSE----------EEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEEE
T ss_pred HHHHHHHHHHHhcC--CCE----------EEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEec
Confidence 89999998763211 000 0111111111000 12223457888888764 4564 555555
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-hCCceEEEEec
Q 001291 1022 PTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIH 1053 (1106)
Q Consensus 1022 PTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~tH 1053 (1106)
||+|.|... .++.+. .-|.|.|++||
T Consensus 421 attGq~al~------~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 421 ASTGQNAVS------QAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp GGGTHHHHH------HHHHHHHHTCCSEEEEEC
T ss_pred CcccHHHHH------HHHHHHhhcCCCEEEEEc
Confidence 998876542 233333 24889999999
No 232
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.09 E-value=1.7e-13 Score=154.96 Aligned_cols=164 Identities=15% Similarity=0.096 Sum_probs=94.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCC--------CCCCCceeEEEECCccCCCCCc------------------cceEEEE
Q 001291 178 GRLTLLLGPPSSGKTTLLLALAGKL--------DPSLKVSGRVTYNGHNMDEFVP------------------ERTAAYI 231 (1106)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~--------~~~~~~~G~V~~~G~~~~~~~~------------------~~~~~yv 231 (1106)
=++++|+|+|||||||||+.|+|.. .++ .|+|.++|.++..... .+.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l 80 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDL 80 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHH
Confidence 3689999999999999999999986 455 8999999987754311 1234555
Q ss_pred ---cCCCCCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCC
Q 001291 232 ---SQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGL 308 (1106)
Q Consensus 232 ---~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL 308 (1106)
+|+..+++..+|.||..++... ........... ......++.++..+++
T Consensus 81 ~~~~q~~~~~~~~~v~E~~~l~~p~-------~~~~~~~~~~~---------------------~~~~~~l~~~l~~vd~ 132 (318)
T 1nij_A 81 LDNLDKGNIQFDRLVIECTGMADPG-------PIIQTFFSHEV---------------------LCQRYLLDGVIALVDA 132 (318)
T ss_dssp HHHHHHTSCCCSEEEEEEETTCCHH-------HHHHHHHHSHH---------------------HHHHEEEEEEEEEEET
T ss_pred HhHHhcCCCCCCEEEEeCCCCCCHH-------HHHHHHhcCcc---------------------ccCeEEECCEEEEEEH
Confidence 4554445566666665443110 00000000000 0000000111222333
Q ss_pred cccccccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHH
Q 001291 309 DICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPET 388 (1106)
Q Consensus 309 ~~~~dt~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~ 388 (1106)
.+..+... .+|+|||||+..+++++..|+++ ||| ..+.+.++++. . +.+|+.++|...++
T Consensus 133 ~~~~~~~~------~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~--~-~~~ii~~sh~~~~~ 192 (318)
T 1nij_A 133 VHADEQMN------QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN--A-RAPVYTVTHGDIDL 192 (318)
T ss_dssp TTHHHHHH------HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC--S-SSCEEECCSSCCCG
T ss_pred HHHHHHHh------hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC--C-CCeEEEecccCCCH
Confidence 33333322 38999999999889999999987 998 56777777652 3 34455556644344
Q ss_pred Hhhc
Q 001291 389 YNLF 392 (1106)
Q Consensus 389 ~~~~ 392 (1106)
..++
T Consensus 193 ~~l~ 196 (318)
T 1nij_A 193 GLLF 196 (318)
T ss_dssp GGGS
T ss_pred HHHh
Confidence 3344
No 233
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.09 E-value=3.1e-12 Score=148.70 Aligned_cols=158 Identities=14% Similarity=0.116 Sum_probs=90.7
Q ss_pred eeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHH
Q 001291 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLF 951 (1106)
Q Consensus 872 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~ 951 (1106)
-++|+++++.|+.++|+|+||||||||+++|+|... .+.+++... ....+|++.+++.. .+++.|..-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ftT--l~p~~G~V~~~~~~--~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFTT--LSPNLGVVEVSEEE--RFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTCS--SCCEEEEEECSSSC--EEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccce--ecceeeEEEecCcc--eEEEEeccc
Confidence 379999999999999999999999999999998642 234444321 22345666654310 011111110
Q ss_pred HhhhhcCCCCCChHHHH--HHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 001291 952 YSAWLRLPPEVNSETRK--MFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029 (1106)
Q Consensus 952 ~~~~~~~~~~~~~~~~~--~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~ 1029 (1106)
+...............+ +.++.++..+++. +.. ..+||+|++|++.+|++|+.+|.||++ +.+|..
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~~-----~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DEP-----LKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SCH-----HHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCC-----HHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 00000000001111000 0011122222332 111 235999999999999999999999999 999997
Q ss_pred HHHHHHHHHHHHHhCCceEEEEec
Q 001291 1030 AAAIVMRTVRNTVDTGRTVVCTIH 1053 (1106)
Q Consensus 1030 ~~~~i~~~l~~~~~~g~tvi~~tH 1053 (1106)
.+..+.++.+.+.+.|.+++.+|.
T Consensus 283 ~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 283 EEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp CHHHHHHHHHHHHTTTSCEEECCT
T ss_pred hHHHHHHHHHHHHhcCCeEEEEEC
Confidence 764333333334445777766553
No 234
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.09 E-value=9.3e-12 Score=140.56 Aligned_cols=73 Identities=16% Similarity=0.085 Sum_probs=62.1
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---------cceEEEEcCCCCCCCCCCHHHH
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---------ERTAAYISQHDNHIGEMTVRET 246 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E~ 246 (1106)
++|++++|+||||||||||++.|+|.+.|. +|+|.++|.++..... +..+.|++|.....|.+||+|+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 689999999999999999999999999887 8999999988643221 1235699999888999999999
Q ss_pred HHHHH
Q 001291 247 LAFAA 251 (1106)
Q Consensus 247 l~f~~ 251 (1106)
+.++.
T Consensus 204 l~~~~ 208 (328)
T 3e70_C 204 IQHAK 208 (328)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98864
No 235
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.08 E-value=6.3e-11 Score=118.44 Aligned_cols=44 Identities=9% Similarity=0.179 Sum_probs=36.9
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCce-EEEEecCc
Q 001291 1011 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT-VVCTIHQP 1055 (1106)
Q Consensus 1011 ~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~t-vi~~tH~~ 1055 (1106)
+.+|++|++|||++ +|...+..+.+++..+.++|++ +|+++|.+
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 45799999999998 6665588899999988877888 88899854
No 236
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.07 E-value=6e-12 Score=127.02 Aligned_cols=78 Identities=21% Similarity=0.087 Sum_probs=63.6
Q ss_pred eEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHH
Q 001291 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYE 948 (1106)
Q Consensus 869 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e 948 (1106)
..+++++||++++|++++|+||||||||||+++|+|.. + .+|.|.++|+++......+ .+++|+..++ .+|+.|
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~e 93 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADPE 93 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCTT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeeeccCC--Ccceeccccc-cCCcHH
Confidence 45899999999999999999999999999999999976 3 4789999998764221111 2788987777 799999
Q ss_pred HHHH
Q 001291 949 SLFY 952 (1106)
Q Consensus 949 ~l~~ 952 (1106)
++.+
T Consensus 94 ~l~~ 97 (158)
T 1htw_A 94 ELEF 97 (158)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9854
No 237
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.03 E-value=8.5e-13 Score=150.19 Aligned_cols=181 Identities=14% Similarity=0.074 Sum_probs=109.2
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCC-------CccceEEEEcCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF-------VPERTAAYISQHDNH 237 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d~~ 237 (1106)
..+|+++|+.+++|++++|+||||||||||+++|+|.+.|+ +|+|.+.|.++... ..++.++|++|++..
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 35899999999999999999999999999999999999887 89999999776432 124568999998877
Q ss_pred CCCC------------CHHHHHHHHHHhcC--------CCcchhhhhHhhHHHHhcCC---CCCC-ChHHHHHhhcchhh
Q 001291 238 IGEM------------TVRETLAFAARCQG--------VGTRYEMLTELSRREKAAGI---KPDP-DIDVFMKAASTEGE 293 (1106)
Q Consensus 238 ~~~l------------TV~E~l~f~~~~~~--------~~~~~~~~~~~~~~ek~~~~---~p~~-d~~~~~~~~~~~~~ 293 (1106)
++.. +++|.+.. ....+ +|-+.. +. ..+..++. .-++ ..+.. +
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~-~~~~~~~~iliDT~Gi~~~---~~-~v~~~~d~vl~v~d~~~~~~~--------~ 185 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLL-CEAAGFDVILVETVGVGQS---ET-AVADLTDFFLVLMLPGAGDEL--------Q 185 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHH-HHHTTCCEEEEEECSSSSC---HH-HHHTTSSEEEEEECSCC-------------
T ss_pred ccccCcccccccchHHHHHHHHHH-HhcCCCCEEEEECCCCCcc---hh-hHHhhCCEEEEEEcCCCcccH--------H
Confidence 6532 23333321 10000 110000 00 00001100 0000 00000 0
Q ss_pred hHhHHHHHHHHHcCCcccccccccCccCCCCChhhhhHHHHHHHHhc------CCccceeecCCCCCCHHHHHHHHHHHH
Q 001291 294 EANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG------PALALFMDEISTGLDSSTTFQIVNCFK 367 (1106)
Q Consensus 294 ~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~al~~------~p~vllLDEptsgLD~~~~~~i~~~l~ 367 (1106)
........+...+.+ +..|..- .+.+|+|++|++..+.+++. .|++++ +|++|......+++.|.
T Consensus 186 ~i~~~i~~~~~ivvl-NK~Dl~~----~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~ 256 (337)
T 2qm8_A 186 GIKKGIFELADMIAV-NKADDGD----GERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIE 256 (337)
T ss_dssp -CCTTHHHHCSEEEE-ECCSTTC----CHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHH
T ss_pred HHHHHHhccccEEEE-EchhccC----chhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHH
Confidence 000001111222333 2233210 12379999999999998887 577776 99999999999999887
Q ss_pred HHH
Q 001291 368 QNI 370 (1106)
Q Consensus 368 ~~~ 370 (1106)
+..
T Consensus 257 ~~~ 259 (337)
T 2qm8_A 257 DHR 259 (337)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 238
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.02 E-value=1.5e-10 Score=119.29 Aligned_cols=46 Identities=13% Similarity=0.213 Sum_probs=41.6
Q ss_pred hcCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCceEEEEecCcc
Q 001291 1011 VANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1056 (1106)
Q Consensus 1011 ~~~p~illLDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~ 1056 (1106)
+.+|++|+||||++ ++|+..+..+.+++....++|+++|++||.+.
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 45999999999995 99999999999999988778999999999875
No 239
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.01 E-value=9e-12 Score=144.84 Aligned_cols=169 Identities=13% Similarity=0.122 Sum_probs=96.9
Q ss_pred eeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHH
Q 001291 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETL 247 (1106)
Q Consensus 168 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 247 (1106)
-+++++.+++|+.++|+|+|||||||||++|+|..+ .+.+.+.+.. ...+++|.+++. ..+++.++.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl--~p~~G~V~~~~~--~~~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTL--SPNLGVVEVSEE--ERFTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSS--CCEEEEEECSSS--CEEEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCccccee--cceeeEEEecCc--ceEEEEecc
Confidence 478999999999999999999999999999999742 2333333322 224566665430 111111111
Q ss_pred HH---HHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCC
Q 001291 248 AF---AARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV 324 (1106)
Q Consensus 248 ~f---~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgL 324 (1106)
-+ +....+.+.. +.+ +...++.++..+++. +..+ ..+
T Consensus 214 Gli~~a~~~~~L~~~------------------------fl~--------~~era~~lL~vvDls---~~~~-----~~l 253 (416)
T 1udx_A 214 GIIEGASEGKGLGLE------------------------FLR--------HIARTRVLLYVLDAA---DEPL-----KTL 253 (416)
T ss_dssp CCCCCGGGSCCSCHH------------------------HHH--------HHTSSSEEEEEEETT---SCHH-----HHH
T ss_pred ccccchhhhhhhhHH------------------------HHH--------HHHHHHhhhEEeCCc---cCCH-----HHH
Confidence 00 0000000000 000 000011122233332 2222 349
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 325 SGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
|+|++||+.+|++|...|.++++ +++|.... ..++.+++.....+.+++.+..+....+.++++.
T Consensus 254 s~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~ 318 (416)
T 1udx_A 254 ETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEA 318 (416)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHH
Confidence 99999999999999999999999 99999876 5555555544434445555544444445444443
No 240
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.01 E-value=2.7e-13 Score=161.99 Aligned_cols=178 Identities=16% Similarity=0.142 Sum_probs=107.4
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHH
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYES 949 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~ 949 (1106)
.+++++++.+++|+.++|+||||||||||+++|+|..++ ..|.|.+.|.+.-.......+++..|........|..+.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~--~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~ 325 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPP--DAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDL 325 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCT--TCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCC--CCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHH
Confidence 478999999999999999999999999999999997754 368889988652111112345555554332222455554
Q ss_pred HHHhhhhcCCC------CCChHHHHHH------------------HHHHHHHcCCCcc--cccccC-CC----CCCCCCH
Q 001291 950 LFYSAWLRLPP------EVNSETRKMF------------------IEEVMELVELKPL--RQSLVG-LP----GVNGLST 998 (1106)
Q Consensus 950 l~~~~~~~~~~------~~~~~~~~~~------------------v~~~l~~~~l~~~--~~~~~~-~~----g~~~LS~ 998 (1106)
+... +|+.+ +....+.... +.++++.+...+. ...... .. ....+|+
T Consensus 326 l~~~--LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 326 LRAA--LRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHTT--GGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHh--hccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 4322 22211 1111111111 1223333322110 000000 00 0123799
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEE--EecCccHHHHHhcC
Q 001291 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC--TIHQPSIDIFEAFD 1064 (1106)
Q Consensus 999 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~--~tH~~~~~~~~~~D 1064 (1106)
||+||+++|. + | |+|||+.+...+++.|.++...|+|+++ +||+++ ++...|+
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~g 458 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFLG 458 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHHT
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHcC
Confidence 9999887752 1 7 9999999888888777777667899985 899987 4666665
No 241
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.01 E-value=5.2e-11 Score=133.47 Aligned_cols=124 Identities=11% Similarity=0.088 Sum_probs=80.2
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEE---CCccCCCCCc--c-ceEEEEcCCCCCC-----CCCCHH
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTY---NGHNMDEFVP--E-RTAAYISQHDNHI-----GEMTVR 244 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~---~G~~~~~~~~--~-~~~~yv~Q~d~~~-----~~lTV~ 244 (1106)
.+|++++|+||||||||||+|+|+ ...|. +|+|.+ +|.+.+.... . +.++|++|++... +.+|+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 358999999999999999999999 88887 999999 8987654321 1 2589999987543 68899
Q ss_pred HHH--HHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcc-cccccccCccC
Q 001291 245 ETL--AFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI-CADTMVGDEMR 321 (1106)
Q Consensus 245 E~l--~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~~~ 321 (1106)
|++ .|+. .. .. .|+ ..+..+.. +....++.+++.+||+. ..+..+..
T Consensus 238 e~l~~~f~~-~~------~~---~c~---~~~~~~~~--------------e~~~~v~~~l~~~~L~~~~~~~~~~~--- 287 (302)
T 2yv5_A 238 REVRNYFRE-FL------RY---QCK---YPDCTHTN--------------EPGCAVKEAVKNGEISCERYKSYLKI--- 287 (302)
T ss_dssp GGGGGGCGG-GH------HH---HHH---STTCCSSS--------------CTTCHHHHHHHTTSSCHHHHHHHHHH---
T ss_pred HHHHHHHHH-HH------Hc---cCC---CCCCCCCC--------------CCCCHHHHHHHcCCCCHHHHHHHHHH---
Confidence 888 4431 00 00 000 00000000 11124677899999986 67776654
Q ss_pred CCCChhhhhHHHHHH
Q 001291 322 RGVSGGQKKRVTTGE 336 (1106)
Q Consensus 322 rgLSGGqkqRvsia~ 336 (1106)
|||.++|++.|||
T Consensus 288 --ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 288 --IKVYLEEIKELCR 300 (302)
T ss_dssp --TTCCCTTHHHHSS
T ss_pred --HHHHHHHHHHHhc
Confidence 9998889999886
No 242
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.00 E-value=1.6e-12 Score=147.97 Aligned_cols=166 Identities=12% Similarity=0.113 Sum_probs=102.0
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh-------cccceEEEEccCCCCCC
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE-------TFARISGYCEQNDIHSP 942 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~~g~v~q~~~~~~ 942 (1106)
.+|+++++++++|++++|+|+||||||||+++|+|...+ ..|+|.+.|.+.... ..++.++|++|++..++
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~--~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 120 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA--AGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFI 120 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEE
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh--CCCEEEEEEEcCcccccccchHHHhhhheeeccCccccc
Confidence 489999999999999999999999999999999985432 247788887665321 13456789999877654
Q ss_pred CC------------CHHHHHHHh-h------------------hhcCCC-------CCC-hHHHHHHHHHHHHHcCCCcc
Q 001291 943 FV------------TVYESLFYS-A------------------WLRLPP-------EVN-SETRKMFIEEVMELVELKPL 983 (1106)
Q Consensus 943 ~~------------tv~e~l~~~-~------------------~~~~~~-------~~~-~~~~~~~v~~~l~~~~l~~~ 983 (1106)
.. ++.|.+... . .+.... +.. ....+.....+++...+--
T Consensus 121 ~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivv- 199 (337)
T 2qm8_A 121 RPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIA- 199 (337)
T ss_dssp ECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEE-
T ss_pred ccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEE-
Confidence 21 123332100 0 000000 000 0000000001122221111
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHhc------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001291 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043 (1106)
Q Consensus 984 ~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~------~p~illLDEPTsgLD~~~~~~i~~~l~~~~~ 1043 (1106)
.++.. ......+|+|++|++..|++++. +|++++ ||++|......+++.|.++..
T Consensus 200 lNK~D-l~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 200 VNKAD-DGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EECCS-TTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred EEchh-ccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 12111 00012479999999999999987 688877 999999999999999988653
No 243
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.00 E-value=2.6e-12 Score=131.31 Aligned_cols=139 Identities=14% Similarity=0.214 Sum_probs=80.5
Q ss_pred eEEEEEcCCCCCHHHHHHhhhCCCCC-ceeEEEEEEcCccCCh------hccc-ceEE----EEccCCCCCCCCCHHHHH
Q 001291 883 VLTALMGVSGAGKTTLMDVLAGRKTG-GYITGDIRISGYPKKQ------ETFA-RISG----YCEQNDIHSPFVTVYESL 950 (1106)
Q Consensus 883 e~~al~G~nGaGKSTLl~~l~g~~~~-~~~~G~i~i~g~~~~~------~~~~-~~~g----~v~q~~~~~~~~tv~e~l 950 (1106)
++++|+|+||||||||+++|+|...+ +...|.|+++|.++.. ..++ +.+| ++.|+..++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~--------- 73 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF--------- 73 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---------
Confidence 58999999999999999999996432 2347999999987321 2233 2455 777765433
Q ss_pred HHhhhhcCCCCCChHHHHHHHHHHHHH-cCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeE-------EEeCC
Q 001291 951 FYSAWLRLPPEVNSETRKMFIEEVMEL-VELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSII-------FMDEP 1022 (1106)
Q Consensus 951 ~~~~~~~~~~~~~~~~~~~~v~~~l~~-~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~il-------lLDEP 1022 (1106)
++. ... +....++++++. +. . .|..++ .+||+|||||++||||++.+|++. .=|.|
T Consensus 74 -----i~~---~~~-~~~a~l~~~i~~~l~--g-~dt~i~----EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 74 -----IRR---VSE-EEGNDLDWIYERYLS--D-YDLVIT----EGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp -----EEE---CCH-HHHTCHHHHHHHHTT--T-CSEEEE----ESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred -----Eec---CCh-hhhhCHHHHHHhhCC--C-CCEEEE----CCcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 010 001 111134455554 43 2 233443 249999999999999999999762 23444
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCCc
Q 001291 1023 TSG---LDARAAAIVMRTVRNTVDTGR 1046 (1106)
Q Consensus 1023 Tsg---LD~~~~~~i~~~l~~~~~~g~ 1046 (1106)
..+ +|......+.+.|.+...+|.
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred cccCcccCcccHHHHHHHHHHHHhccC
Confidence 322 334445666677766555553
No 244
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.00 E-value=1.6e-11 Score=138.64 Aligned_cols=144 Identities=13% Similarity=0.067 Sum_probs=93.3
Q ss_pred eeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh-------cccc--eEEEEccCCCCCCCCCHHHH
Q 001291 879 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE-------TFAR--ISGYCEQNDIHSPFVTVYES 949 (1106)
Q Consensus 879 i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~~~~--~~g~v~q~~~~~~~~tv~e~ 949 (1106)
.++|++++|+||||||||||++.|+|...+ ..|+|.+.|.+.... .+++ .+.+++|.....|..+++|+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~--~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKN--HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 368999999999999999999999996432 357889988775321 1122 35599999888888899999
Q ss_pred HHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 001291 950 LFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029 (1106)
Q Consensus 950 l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~ 1029 (1106)
+.++..... +. -+++..|+.+.. ..=.++.-.|++++..++.+++||.+|. .
T Consensus 204 l~~~~~~~~--d~----------vliDtaG~~~~~------------~~l~~eL~~i~ral~~de~llvLDa~t~-~--- 255 (328)
T 3e70_C 204 IQHAKARGI--DV----------VLIDTAGRSETN------------RNLMDEMKKIARVTKPNLVIFVGDALAG-N--- 255 (328)
T ss_dssp HHHHHHHTC--SE----------EEEEECCSCCTT------------TCHHHHHHHHHHHHCCSEEEEEEEGGGT-T---
T ss_pred HHHHHhccc--hh----------hHHhhccchhHH------------HHHHHHHHHHHHHhcCCCCEEEEecHHH-H---
Confidence 976532110 00 001111111111 1112334458999998888889995554 3
Q ss_pred HHHHHHHHHHHHH-hCCceEEEEecCc
Q 001291 1030 AAAIVMRTVRNTV-DTGRTVVCTIHQP 1055 (1106)
Q Consensus 1030 ~~~~i~~~l~~~~-~~g~tvi~~tH~~ 1055 (1106)
.+.+.++.+. ..+.|+|++||..
T Consensus 256 ---~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 256 ---AIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp ---HHHHHHHHHHHHSCCCEEEEECGG
T ss_pred ---HHHHHHHHHHHhcCCCEEEEeCcC
Confidence 3344455554 3489999999953
No 245
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.00 E-value=3e-10 Score=131.55 Aligned_cols=151 Identities=20% Similarity=0.233 Sum_probs=86.7
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhh--hCCCC---CceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHH
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVL--AGRKT---GGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLF 951 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l--~g~~~---~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~ 951 (1106)
+-|++|++++|+||||||||||++.| .+..+ ++.-.+.+++++..... . +.+.
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~---------------------~-~rl~ 230 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFR---------------------P-VRLV 230 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCC---------------------H-HHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccC---------------------H-HHHH
Confidence 57899999999999999999999954 45432 11123466776643210 0 0000
Q ss_pred -HhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH-HHHHHHHHHHHHh--cCCCeEEEeCCCCCCC
Q 001291 952 -YSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST-EQRKRLTIAVELV--ANPSIIFMDEPTSGLD 1027 (1106)
Q Consensus 952 -~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~-Gqrqrl~iA~aL~--~~p~illLDEPTsgLD 1027 (1106)
....+. ... +++++.+-+. . ..+. .+.+.+..+.+++ .+|++|++||||+.+|
T Consensus 231 ~~a~~~g----l~~-------~~vleni~~~---~---------~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 231 SIAQRFG----LDP-------DDALNNVAYA---R---------AYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp HHHHHTT----CCH-------HHHHHTEEEE---E---------CCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred HHHHHcC----CCh-------HhHhhcEEEe---c---------cCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc
Confidence 000000 000 1122211110 0 1222 2344444444443 4699999999999999
Q ss_pred HHHH------------HHHHHHHHHHHhC-CceEEEEecCcc------------------HHHHHhcCeEEEEecC
Q 001291 1028 ARAA------------AIVMRTVRNTVDT-GRTVVCTIHQPS------------------IDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 1028 ~~~~------------~~i~~~l~~~~~~-g~tvi~~tH~~~------------------~~~~~~~D~v~~l~~g 1072 (1106)
.... ..+++.|++++++ |.|||+|+|... ..+...+|.++.|.++
T Consensus 288 ~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 288 TDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred hhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 6433 5677888888754 999999999821 1234568999999864
No 246
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.99 E-value=5.1e-12 Score=147.15 Aligned_cols=137 Identities=17% Similarity=0.183 Sum_probs=91.2
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-------cceEEEEc-----
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-------ERTAAYIS----- 232 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~----- 232 (1106)
..+|+++ + .++|++++|+|||||||||||++|+|.+++. +|+|.+.|.++..... .+.++|.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr 230 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR 230 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHH
Confidence 4578888 4 3899999999999999999999999999887 8999999987642111 12344544
Q ss_pred ----CCCCC--CCC----CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHH
Q 001291 233 ----QHDNH--IGE----MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYY 302 (1106)
Q Consensus 233 ----Q~d~~--~~~----lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~ 302 (1106)
|++.. +++ .|+.+++.++..-..+ ...+ ...+ ....++ .
T Consensus 231 ~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv------~~tl----------h~~~--------------~~~~i~-r 279 (418)
T 1p9r_A 231 AILRQDPDVVMVGEIRDLETAQIAVQASLTGHLV------MSTL----------HTNT--------------AVGAVT-R 279 (418)
T ss_dssp HHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEE------EEEE----------CCSS--------------SHHHHH-H
T ss_pred HHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCc------cccc----------chhh--------------HHHHHH-H
Confidence 87654 354 5888888775321100 0000 0000 001122 3
Q ss_pred HHHcCCcccccccccCccCCCCChhhhhHHHHHHHHhcCCccce
Q 001291 303 LKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALF 346 (1106)
Q Consensus 303 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~al~~~p~vll 346 (1106)
|..+|++... ... .|||||+|| ||++++.+|++..
T Consensus 280 L~~lgl~~~~--~~~-----~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 280 LRDMGIEPFL--ISS-----SLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHTCCHHH--HHH-----HEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHcCCcHHH--HHH-----HHHHHHHHH--hhhhhcCCCCccC
Confidence 5667887543 232 499999999 9999999999865
No 247
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.97 E-value=1.3e-09 Score=125.95 Aligned_cols=74 Identities=20% Similarity=0.324 Sum_probs=61.7
Q ss_pred CCCChhhhhHH------HHHHHHhcC-CccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 322 RGVSGGQKKRV------TTGEMMVGP-ALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 322 rgLSGGqkqRv------sia~al~~~-p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
..+|||||||+ ++|++++.+ |++|+|||||+|||+..+..+.+.|+++. .+++ |++++|.. ++..++|+
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~-vi~~th~~-~~~~~~d~ 354 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK--SIPQ-MIIITHHR-ELEDVADV 354 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC--SCSE-EEEEESCG-GGGGGCSE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc--cCCe-EEEEEChH-HHHhhCCE
Confidence 45999999988 567899999 99999999999999999999999998752 2345 44556664 47889999
Q ss_pred EEEec
Q 001291 395 IILLS 399 (1106)
Q Consensus 395 vilL~ 399 (1106)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 248
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.96 E-value=1.9e-12 Score=154.79 Aligned_cols=85 Identities=21% Similarity=0.190 Sum_probs=65.1
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
..+++++++.+++|+.++|+|||||||||||++|+|.++|+ +|.|++.|.+--.......++++.|........|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 35789999999999999999999999999999999999987 899999986522221234567777765433346777
Q ss_pred HHHHHHHH
Q 001291 245 ETLAFAAR 252 (1106)
Q Consensus 245 E~l~f~~~ 252 (1106)
+.+..+.+
T Consensus 324 ~~l~~~LR 331 (511)
T 2oap_1 324 DLLRAALR 331 (511)
T ss_dssp HHHHTTGG
T ss_pred HHHHHhhc
Confidence 77765544
No 249
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.96 E-value=5.4e-11 Score=122.72 Aligned_cols=48 Identities=15% Similarity=0.116 Sum_probs=36.5
Q ss_pred hcCCccceeecCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhH
Q 001291 339 VGPALALFMDEIST-GLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPE 387 (1106)
Q Consensus 339 ~~~p~vllLDEpts-gLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~ 387 (1106)
+.+|++|+||||++ ++|+.....+.+.+..... .+.++|++.+++..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChhH
Confidence 44899999999985 9999999888888876542 456777766655443
No 250
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.94 E-value=4.5e-11 Score=132.85 Aligned_cols=132 Identities=14% Similarity=0.065 Sum_probs=81.6
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhh---h
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAW---L 956 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~---~ 956 (1106)
+++.++||+|++|||||||.+.|.+.... .| . -.+.+.+|.|++.+++ .+.++++.++.. +
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~------~~~~~~iv~~D~f~~~-~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------G------GEKSIGYASIDDFYLT-HEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------G------GGSCEEEEEGGGGBCC-HHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------C------CCceEEEeccccccCC-hHHHHHHhccccccch
Confidence 46889999999999999999999985431 11 0 0234556699887765 478888877521 1
Q ss_pred cCCCCCChHHHHHHHHHHHHHcCCC--cccccccCCC-CCCCCCHHHHHHHHHH--HHHhcCCCeEEEeCCCCCCCHH
Q 001291 957 RLPPEVNSETRKMFIEEVMELVELK--PLRQSLVGLP-GVNGLSTEQRKRLTIA--VELVANPSIIFMDEPTSGLDAR 1029 (1106)
Q Consensus 957 ~~~~~~~~~~~~~~v~~~l~~~~l~--~~~~~~~~~~-g~~~LS~Gqrqrl~iA--~aL~~~p~illLDEPTsgLD~~ 1029 (1106)
....+.........+.+.++.+... ......+..| ....+||||+||+.+| +++ +|+|||+||||+++|+.
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPI 168 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCcc
Confidence 0000111111123345556555332 0000000001 1246999999999997 555 89999999999999985
No 251
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.91 E-value=2.5e-12 Score=149.77 Aligned_cols=135 Identities=13% Similarity=0.016 Sum_probs=88.6
Q ss_pred eEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh-------hcccceEEEEc------
Q 001291 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ-------ETFARISGYCE------ 935 (1106)
Q Consensus 869 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~g~v~------ 935 (1106)
..+|+++ + .++|++++|+||||||||||+++|+|...+ ..|.|.+.+.+... ....+.+|+.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~--~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~ 231 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNS--SERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRA 231 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC--TTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEEecccchhccCCcceEEEccccCcCHHHHHHH
Confidence 4578888 5 389999999999999999999999996543 25788888766521 11223345544
Q ss_pred ---cCCCCC--CC----CCHHHHHHHhhhhcCC---CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 001291 936 ---QNDIHS--PF----VTVYESLFYSAWLRLP---PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKR 1003 (1106)
Q Consensus 936 ---q~~~~~--~~----~tv~e~l~~~~~~~~~---~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqr 1003 (1106)
|++... .. .|+.+++.+....+.. ..... ....+ +.|..+++.+.. . ...|||||+||
T Consensus 232 ~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~--~~~~i-~rL~~lgl~~~~--~-----~~~LSgg~~QR 301 (418)
T 1p9r_A 232 ILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNT--AVGAV-TRLRDMGIEPFL--I-----SSSLLGVLAQR 301 (418)
T ss_dssp HGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSS--SHHHH-HHHHHHTCCHHH--H-----HHHEEEEEEEE
T ss_pred HhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhh--HHHHH-HHHHHcCCcHHH--H-----HHHHHHHHHHH
Confidence 776542 32 5888888765321100 00111 11222 346677887643 2 23599999999
Q ss_pred HHHHHHHhcCCCeEEE
Q 001291 1004 LTIAVELVANPSIIFM 1019 (1106)
Q Consensus 1004 l~iA~aL~~~p~illL 1019 (1106)
||++|+.+|++..-
T Consensus 302 --LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 --LVRTLCPDCKEPYE 315 (418)
T ss_dssp --EEEEECTTTCEEEE
T ss_pred --hhhhhcCCCCccCC
Confidence 99999999998763
No 252
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.90 E-value=7e-11 Score=132.38 Aligned_cols=123 Identities=15% Similarity=0.223 Sum_probs=79.9
Q ss_pred eeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEE---cCccCChh--ccc-ceEEEEccCCCCC-----CCCCH
Q 001291 878 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRI---SGYPKKQE--TFA-RISGYCEQNDIHS-----PFVTV 946 (1106)
Q Consensus 878 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i---~g~~~~~~--~~~-~~~g~v~q~~~~~-----~~~tv 946 (1106)
.+.+|++++|+||||||||||+|+|+ ...+ .+|+|.+ +|.+.... ... +.+||++|.+... +.+|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~--~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEEL--RTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCC--CCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhC--cccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 34579999999999999999999999 7653 4789998 88765432 111 2479999998654 57899
Q ss_pred HHHH--HHhhh----hcCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHH
Q 001291 947 YESL--FYSAW----LRLPPEVNSETRKMFIEEVMELVELKP-LRQSLVGLPGVNGLSTEQRKRLTIAVE 1009 (1106)
Q Consensus 947 ~e~l--~~~~~----~~~~~~~~~~~~~~~v~~~l~~~~l~~-~~~~~~~~~g~~~LS~Gqrqrl~iA~a 1009 (1106)
|++ .|... .+........+....+.++++.++|.+ ..+... ..||+.++|++.|||+
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 887 45410 111110111122345889999999986 555553 3599988999999873
No 253
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.88 E-value=4.2e-12 Score=146.17 Aligned_cols=169 Identities=15% Similarity=0.165 Sum_probs=114.1
Q ss_pred EEeCceEEEEEcCCCCCHHHHHHHHhC------------CCCCCCCceeEEEECCccCCC----CCccceE---EEEcCC
Q 001291 174 IVKPGRLTLLLGPPSSGKTTLLLALAG------------KLDPSLKVSGRVTYNGHNMDE----FVPERTA---AYISQH 234 (1106)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G------------~~~~~~~~~G~V~~~G~~~~~----~~~~~~~---~yv~Q~ 234 (1106)
.+++|..++|+|+||||||||+++|+| ...|+ +|.|.++|..+.. +.+++.+ .++.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~---~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~ 92 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPE---EAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI 92 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTT---EEEEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecce---eeeeeeCCcchhhhhhhcccccccCcceEEEec
Confidence 457899999999999999999999999 33455 8999999854311 1233333 467777
Q ss_pred CCCCCCCCHHHHH--HHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccc
Q 001291 235 DNHIGEMTVRETL--AFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICA 312 (1106)
Q Consensus 235 d~~~~~lTV~E~l--~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (1106)
+-+....+..|++ .|-..++... .++..+....
T Consensus 93 pGl~~~~s~~e~L~~~fl~~ir~~d-------------------------------------------~il~Vvd~~~-- 127 (392)
T 1ni3_A 93 AGLTKGASTGVGLGNAFLSHVRAVD-------------------------------------------AIYQVVRAFD-- 127 (392)
T ss_dssp GGGCCCCCSSSSSCHHHHHHHTTCS-------------------------------------------EEEEEEECCC--
T ss_pred cccccCCcHHHHHHHHHHHHHHHHH-------------------------------------------HHHHHHhccc--
Confidence 7777777766655 4433322110 0000111110
Q ss_pred cccccCccCCCCChhhhhHHHHHHHHhcCC--ccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHh
Q 001291 313 DTMVGDEMRRGVSGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYN 390 (1106)
Q Consensus 313 dt~vg~~~~rgLSGGqkqRvsia~al~~~p--~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~ 390 (1106)
|.. +..+||+. +| +++++|||+.++|.......++.++......+.+ ++ .|...++.+
T Consensus 128 d~~-----i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~t-i~--sh~~~~~~~ 187 (392)
T 1ni3_A 128 DAE-----IIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANT-LE--MKAKKEEQA 187 (392)
T ss_dssp TTC-----SSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCS-SS--HHHHHHHHH
T ss_pred cce-----eeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCc-cc--cccHHHHHH
Confidence 111 22256653 88 9999999999999999999888888761223334 32 788889999
Q ss_pred hcCeEE-EecCC-eEEEEcCHH
Q 001291 391 LFDDII-LLSDG-QIVYQGPRE 410 (1106)
Q Consensus 391 ~~D~vi-lL~~G-~iv~~G~~~ 410 (1106)
+||++. +|.+| ++++.|+.+
T Consensus 188 l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 188 IIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHTTCSCGGGSCCC
T ss_pred HHHHHHHHhccCCceeecCCCC
Confidence 999999 99999 988877643
No 254
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.87 E-value=7.7e-10 Score=128.07 Aligned_cols=62 Identities=6% Similarity=-0.002 Sum_probs=42.6
Q ss_pred cCCccceeecCCCCCCHHHH------------HHHHHHHHHHHHhcCCeEEEEEecCh-------------------hHH
Q 001291 340 GPALALFMDEISTGLDSSTT------------FQIVNCFKQNIHINSGTAVISLLQPA-------------------PET 388 (1106)
Q Consensus 340 ~~p~vllLDEptsgLD~~~~------------~~i~~~l~~~~~~~~~t~ii~i~q~~-------------------~~~ 388 (1106)
.+|+++++|||++.+|+... .++++.|+++++..+.++|++ +|.. ..+
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv-~Hv~~~~~g~~~~~g~~~~p~gg~~l 350 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVT-NQVVAQVDGGMAFNPDPKKPIGGNIM 350 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEE-EEC--------------------CHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEE-EeecccCCccccccCCCccCCchhHH
Confidence 57999999999999997533 567788888887666565554 4541 224
Q ss_pred HhhcCeEEEecCCe
Q 001291 389 YNLFDDIILLSDGQ 402 (1106)
Q Consensus 389 ~~~~D~vilL~~G~ 402 (1106)
...+|.++.|..|+
T Consensus 351 ~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 351 AYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHCSEEEEEEECS
T ss_pred HHhcceEEEEEecC
Confidence 56789999997653
No 255
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.87 E-value=1.4e-09 Score=124.50 Aligned_cols=135 Identities=15% Similarity=0.027 Sum_probs=71.2
Q ss_pred EEEEcCCCCCHHHHHHhhhC-CCCCceeEEEEEEcCccCChh-cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCC
Q 001291 885 TALMGVSGAGKTTLMDVLAG-RKTGGYITGDIRISGYPKKQE-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEV 962 (1106)
Q Consensus 885 ~al~G~nGaGKSTLl~~l~g-~~~~~~~~G~i~i~g~~~~~~-~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 962 (1106)
+.|.||||+|||||+++|++ ...+ ..|.+.++|.+.... .....+++++|.+.+..... + . ...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~--~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~--~~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGP--GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D--------M--GNN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCT--TCCC------------------CCEECSSEEEECCC----------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC--CCCeEEecceeecccccccceeeeecccceEEecHh--h--------c--CCc
Confidence 89999999999999999998 3332 357788887654321 11344677777543211000 0 0 000
Q ss_pred ChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001291 963 NSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1042 (1106)
Q Consensus 963 ~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~ 1042 (1106)
... .+.+.++.+......+... .||+ +..+|+++++|||++ ||..++..+.+++.+..
T Consensus 105 ~~~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 105 DRI----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp CHH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred chH----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 111 1233333321111001110 2465 788999999999999 99999999999998864
Q ss_pred hCCceEEEEecCcc
Q 001291 1043 DTGRTVVCTIHQPS 1056 (1106)
Q Consensus 1043 ~~g~tvi~~tH~~~ 1056 (1106)
.+.++|+++|+++
T Consensus 163 -~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 163 -KNIRLIMVCDSMS 175 (354)
T ss_dssp -TTEEEEEEESCSC
T ss_pred -CCCEEEEEeCCHH
Confidence 4789999999976
No 256
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.86 E-value=5.8e-12 Score=139.24 Aligned_cols=142 Identities=15% Similarity=0.173 Sum_probs=92.1
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCC-CCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHD-NHIGE 240 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~ 240 (1106)
..+++++++.+++| ++|+||||||||||+++|+|.+.+ |.|.++|.++..... .+.+++++|.. ...|.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 35899999999999 999999999999999999998753 789999977643211 23455666642 23444
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCcc
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1106)
+++.|++.+....++ .. + .+ .+....+..+.
T Consensus 106 i~~~Deid~~~~~r~--------------~~--------~------------------~~------~~~~~~~~~l~--- 136 (274)
T 2x8a_A 106 VIFFDEVDALCPRRS--------------DR--------E------------------TG------ASVRVVNQLLT--- 136 (274)
T ss_dssp EEEEETCTTTCC-------------------------------------------------------CTTHHHHHHH---
T ss_pred eEeeehhhhhhcccC--------------CC--------c------------------ch------HHHHHHHHHHH---
Confidence 455455443211000 00 0 00 01111122222
Q ss_pred CCCCChhhhhHHHHHHHHhcCCccceeecCCC------------CCCHHHHHHHHHHH
Q 001291 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEIST------------GLDSSTTFQIVNCF 366 (1106)
Q Consensus 321 ~rgLSGGqkqRvsia~al~~~p~vllLDEpts------------gLD~~~~~~i~~~l 366 (1106)
.|||||+||+.+++++..+|++| ||++. -.|...+.+|++.+
T Consensus 137 --~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 137 --EMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp --HHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred --hhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 39999999999999999999975 98864 23666777776543
No 257
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.81 E-value=4.3e-11 Score=126.70 Aligned_cols=30 Identities=40% Similarity=0.478 Sum_probs=28.1
Q ss_pred EeCceEEEEEcCCCCCHHHHHHHHhCCCCC
Q 001291 175 VKPGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
.++|++++|+||||||||||+++|+|.+.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 468999999999999999999999999875
No 258
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.81 E-value=3e-10 Score=127.22 Aligned_cols=72 Identities=18% Similarity=0.248 Sum_probs=50.3
Q ss_pred EeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEE---CCccCCCCCc---cceEEEEcCCCC------------
Q 001291 175 VKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTY---NGHNMDEFVP---ERTAAYISQHDN------------ 236 (1106)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~---~G~~~~~~~~---~~~~~yv~Q~d~------------ 236 (1106)
+.+|++++|+|||||||||||++|+|...|+ +|+|.+ +|.+++.... .+.++||+|++.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 4568999999999999999999999999998 999999 8887754321 135899999864
Q ss_pred ----CCCCCCHHHHHHHH
Q 001291 237 ----HIGEMTVRETLAFA 250 (1106)
Q Consensus 237 ----~~~~lTV~E~l~f~ 250 (1106)
++|++|+ ||+.|+
T Consensus 243 ~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp HHGGGSTTSSS-CCCSST
T ss_pred HHHHHHHhccc-ccCcCC
Confidence 5788888 888775
No 259
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.81 E-value=3.5e-11 Score=127.38 Aligned_cols=120 Identities=15% Similarity=0.140 Sum_probs=65.7
Q ss_pred eeCCeEEEEEcCCCCCHHHHHHhhhCCCCC-ceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhc
Q 001291 879 FRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLR 957 (1106)
Q Consensus 879 i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~-~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~ 957 (1106)
.++|+++||+||||||||||+++|+|...+ |...|.|.++|+...... .+++.......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~--------------------~~~~~~~~~~~ 78 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRL--------------------LEPRGLLPRKG 78 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHH--------------------HGGGTCGGGTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHH--------------------HHHhcccccCC
Confidence 468999999999999999999999996431 223566666665432211 11110000000
Q ss_pred CCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH-HHHhcCCCeEEEeCCC
Q 001291 958 LPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIA-VELVANPSIIFMDEPT 1023 (1106)
Q Consensus 958 ~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA-~aL~~~p~illLDEPT 1023 (1106)
.+...... .+.+.+..+...+..+......+ ..+|+||+|++++| ++++.++.++++|||.
T Consensus 79 ~~~~~~~~----~~~~~l~~l~~~~~i~~p~~d~~-~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 79 APETFDFE----GFQRLCHALKHQERVIYPLFDRA-RDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp SGGGBCHH----HHHHHHHHHHHCSCEEEEEEETT-TTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred CCchhhHH----HHHHHHHHHhcCCceecccCCcc-ccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 00000111 11222222211111111111112 24899999999998 8888888888889884
No 260
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.81 E-value=1e-12 Score=138.18 Aligned_cols=57 Identities=14% Similarity=0.099 Sum_probs=42.8
Q ss_pred HHH-HHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC
Q 001291 334 TGE-MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1106)
Q Consensus 334 ia~-al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 400 (1106)
.++ +++.+|++++|||+|+++|..+...|.+.|....+.. .+.| . . ..||.|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~------~~a~-~--~-~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDM------ESSK-E--P-GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHT------TGGG-S--T-TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------HHhh-c--c-CCceEEEECCC
Confidence 455 7889999999999999999999999988887654321 1122 1 1 67899988864
No 261
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.79 E-value=2.3e-11 Score=138.49 Aligned_cols=169 Identities=20% Similarity=0.196 Sum_probs=101.7
Q ss_pred eeeeceeEEEeCc-------eEEEEEcCCCCCHHHHHHHHhCCCCCCC-CceeEEEECCccCCCC---CccceEEEEcCC
Q 001291 166 TILKDVSGIVKPG-------RLTLLLGPPSSGKTTLLLALAGKLDPSL-KVSGRVTYNGHNMDEF---VPERTAAYISQH 234 (1106)
Q Consensus 166 ~iL~~vs~~i~~G-------~~~~llGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~ 234 (1106)
.+++++++.+++| +.++|.||||+|||||+++|+|.+.... ..+|.+..++.++... ..++.+.|+.|.
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~ 111 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETG
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcch
Confidence 4777788777776 8899999999999999999999873211 1266666655543211 113569999997
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccc
Q 001291 235 DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADT 314 (1106)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1106)
+.+.+ ++.|++.......+. +.. +.. ......++..+..++|.. +++
T Consensus 112 ~~l~~--~~~e~L~~~~~~~~~----~i~--~~~------------------------~~~~~~i~~~l~~~~li~-at~ 158 (334)
T 1in4_A 112 HRLNK--AVEELLYSAIEDFQI----DIM--IGK------------------------GPSAKSIRIDIQPFTLVG-ATT 158 (334)
T ss_dssp GGCCH--HHHHHHHHHHHTSCC----CC-----------------------------------------CCCEEEE-EES
T ss_pred hhcCH--HHHHHHHHHHHhccc----cee--ecc------------------------CcccccccccCCCeEEEE-ecC
Confidence 76554 788888544322110 000 000 000011223344455544 566
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 315 ~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
.++. ||+|+|+|+.++ .+||+.+..++.+.|++.+...+ +.++...+..++++
T Consensus 159 ~~~~-----Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~------~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 159 RSGL-----LSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD------VEIEDAAAEMIAKR 211 (334)
T ss_dssp CGGG-----SCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT------CCBCHHHHHHHHHT
T ss_pred Cccc-----CCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC------CCcCHHHHHHHHHh
Confidence 6654 999999998544 77888888899998888765433 23444444444443
No 262
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.78 E-value=4.8e-09 Score=104.75 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=30.6
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
..+|+++ +|+.++|+||||||||||+++|+|.+.+
T Consensus 28 ~~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 28 VYVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp HHHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred HHHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3466666 8999999999999999999999998765
No 263
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.78 E-value=1e-10 Score=131.65 Aligned_cols=74 Identities=15% Similarity=0.217 Sum_probs=60.6
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCCC--CCCCceeEEEE---CCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHHH
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD--PSLKVSGRVTY---NGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFA 250 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~---~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 250 (1106)
++|++++|+||||||||||+++|+|.+. |+ +|+|.+ +|..... ...+.++++ |+..+++.+|+.+++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~i~vi~~d~~~~~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~ 152 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRRVELITTDGFLHPN-QVLKERGLM-KKKGFPESYDMHRLVKFV 152 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCCEEEEEGGGGBCCH-HHHHHHTCT-TCTTSGGGBCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCeEEEEecCCccCcH-HHHHhCCEe-ecCCCCCCccHHHHHHHH
Confidence 7899999999999999999999999987 76 899999 8876431 113457788 777778889999999987
Q ss_pred HHhc
Q 001291 251 ARCQ 254 (1106)
Q Consensus 251 ~~~~ 254 (1106)
..+.
T Consensus 153 ~~l~ 156 (308)
T 1sq5_A 153 SDLK 156 (308)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6543
No 264
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.75 E-value=7.7e-12 Score=144.01 Aligned_cols=170 Identities=9% Similarity=0.064 Sum_probs=109.2
Q ss_pred eeeCCeEEEEEcCCCCCHHHHHHhhhCCC----------CCceeEEEEEEcCccCCh----hcccce---EEEEccCCCC
Q 001291 878 AFRPGVLTALMGVSGAGKTTLMDVLAGRK----------TGGYITGDIRISGYPKKQ----ETFARI---SGYCEQNDIH 940 (1106)
Q Consensus 878 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~----------~~~~~~G~i~i~g~~~~~----~~~~~~---~g~v~q~~~~ 940 (1106)
.+++|..++|+|+||||||||+++|+|.. +-.+..|.+.+.|..... ....+. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 56789999999999999999999999932 112457999998743211 011122 2466666666
Q ss_pred CCCCCHHHHH--HHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCC--Ce
Q 001291 941 SPFVTVYESL--FYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANP--SI 1016 (1106)
Q Consensus 941 ~~~~tv~e~l--~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p--~i 1016 (1106)
....+..|++ .|...++.. +.++..++..+ +. .+..+|++. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~------------d~il~Vvd~~~--d~-----~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV------------DAIYQVVRAFD--DA-----EIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC------------SEEEEEEECCC--TT-----CSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHH------------HHHHHHHhccc--cc-----eeeeecccc------------Ccchhh
Confidence 5555544433 222222210 00111111111 11 112245542 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhCCceEEEEecCccHHHHHhcCeEE-EEecCC-EEEEEecCC
Q 001291 1017 IFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQPSIDIFEAFDELF-LMKRGG-REVYVGPLG 1082 (1106)
Q Consensus 1017 llLDEPTsgLD~~~~~~i~~~l~~~-~~~g~tvi~~tH~~~~~~~~~~D~v~-~l~~gG-~~~~~G~~~ 1082 (1106)
+++|||+.++|+......++.++.. .+.|.||+ +|... ++.+.||++. +|.+ | ++++.|++.
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~-G~~~~~~~~~~ 209 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTE-TKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHT-TCSCGGGSCCC
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhcc-CCceeecCCCC
Confidence 9999999999999999999999988 66677864 99886 5788899998 7765 5 666666554
No 265
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.73 E-value=4.7e-12 Score=133.05 Aligned_cols=56 Identities=11% Similarity=0.211 Sum_probs=42.9
Q ss_pred HHH-HHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 1006 IAV-ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 1006 iA~-aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
+++ +++.+|++++|||+|+++|..+.+.|++.|.+..+. +.++|.+ ..||.+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 455 678889999999999999999999999998876542 2345621 4689887775
No 266
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.71 E-value=1.4e-09 Score=121.29 Aligned_cols=70 Identities=19% Similarity=0.305 Sum_probs=42.9
Q ss_pred EeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEE---CCccCCCCCc-cce-EEEEcCCCCCCC----CCCHHH
Q 001291 175 VKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTY---NGHNMDEFVP-ERT-AAYISQHDNHIG----EMTVRE 245 (1106)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~---~G~~~~~~~~-~~~-~~yv~Q~d~~~~----~lTV~E 245 (1106)
+.+|++++|+||||||||||+|+|+|...+. +|+|.+ +|...+.... .+. .+|+.|.+.+.. .+|+ |
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-H
Confidence 4579999999999999999999999999887 899998 8876654321 122 799999986654 6899 8
Q ss_pred HHH
Q 001291 246 TLA 248 (1106)
Q Consensus 246 ~l~ 248 (1106)
++.
T Consensus 246 ~l~ 248 (307)
T 1t9h_A 246 ELG 248 (307)
T ss_dssp HHG
T ss_pred HHH
Confidence 883
No 267
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.71 E-value=1.2e-10 Score=130.88 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=71.0
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeee-------------------eCCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAF-------------------RPGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i-------------------~~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
+.++||++.|. +++++|++.+ .+|+++||+|+||||||||+++|+|
T Consensus 38 i~~~~v~~~y~---------------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 38 LSLEEVAEIYL---------------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCHHHHHHTHH---------------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred cchHhHHHHHH---------------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 66777775542 3678888887 8999999999999999999999999
Q ss_pred CCCCceeEEEEEE---cCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhc
Q 001291 905 RKTGGYITGDIRI---SGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLR 957 (1106)
Q Consensus 905 ~~~~~~~~G~i~i---~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~ 957 (1106)
.....+..|.|.+ +|+..... .++.+|++ |...+.+.+|+.+++.+...++
T Consensus 103 ~l~~~~~~G~i~vi~~d~~~~~~~-~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 103 LLSRWPEHRRVELITTDGFLHPNQ-VLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHTTSTTCCCEEEEEGGGGBCCHH-HHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HHhhCCCCCeEEEEecCCccCcHH-HHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 5330013688888 88775432 23446788 7666667789999987765443
No 268
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.68 E-value=1.5e-08 Score=116.05 Aligned_cols=135 Identities=16% Similarity=0.173 Sum_probs=67.6
Q ss_pred EEEEcCCCCCHHHHHHHHhC-CCCCCCCceeEEEECCccCCCCC-ccceEEEEcCCCCCCCCCCHHHHHHHHHHhcCCCc
Q 001291 181 TLLLGPPSSGKTTLLLALAG-KLDPSLKVSGRVTYNGHNMDEFV-PERTAAYISQHDNHIGEMTVRETLAFAARCQGVGT 258 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G-~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~ 258 (1106)
++|.||||+|||||+++|+| .+.++ .|++.++|.+..... ....++|++|.+.+....+ + .+...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~ 105 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D--------MGNND 105 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC--------------CC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHh--h--------cCCcc
Confidence 89999999999999999999 56776 899999987654221 1356788888653211100 0 00000
Q ss_pred chhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhhhhHHHHHHHH
Q 001291 259 RYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMM 338 (1106)
Q Consensus 259 ~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~al 338 (1106)
. ..+...++.+......+..+ .+|| +
T Consensus 106 ~-------------------------------------~~~~~~i~~~~~~~~~~~~~------~ls~-----------l 131 (354)
T 1sxj_E 106 R-------------------------------------IVIQELLKEVAQMEQVDFQD------SKDG-----------L 131 (354)
T ss_dssp H-------------------------------------HHHHHHHHHHTTTTC---------------------------
T ss_pred h-------------------------------------HHHHHHHHHHHHhccccccc------cccc-----------c
Confidence 0 00111111111100001111 2566 7
Q ss_pred hcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChh
Q 001291 339 VGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAP 386 (1106)
Q Consensus 339 ~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~ 386 (1106)
.++|+++++|||++ ||..+...+.+.+.+. ..++++|.++|...
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~---~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKY---SKNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHS---TTTEEEEEEESCSC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhh---cCCCEEEEEeCCHH
Confidence 88999999999999 9999999999988874 23455665666543
No 269
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.65 E-value=1.6e-09 Score=120.70 Aligned_cols=118 Identities=19% Similarity=0.188 Sum_probs=66.2
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEE---cCccCChh-cccce-EEEEccCCCCCC----CCCHH
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRI---SGYPKKQE-TFARI-SGYCEQNDIHSP----FVTVY 947 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i---~g~~~~~~-~~~~~-~g~v~q~~~~~~----~~tv~ 947 (1106)
+.+.+|++++|+||||||||||+|+|+|... +..|+|.+ +|...... ...+. .||++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 6677999999999999999999999999754 34788888 77654321 12222 699999987654 5789
Q ss_pred HHHH--Hhhh--h----cCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 948 ESLF--YSAW--L----RLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 948 e~l~--~~~~--~----~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
|++. |... + +........+....+.++++.++|.+.+.... ..|+.|++|
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~ 302 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKD 302 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhh
Confidence 8883 3311 1 11110111122345789999999976433221 136677766
No 270
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.65 E-value=3e-08 Score=117.59 Aligned_cols=178 Identities=12% Similarity=0.127 Sum_probs=105.8
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEE-EEEEcCccCChhccc-ceEEEEccCCCCCCCCCHH
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-DIRISGYPKKQETFA-RISGYCEQNDIHSPFVTVY 947 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G-~i~i~g~~~~~~~~~-~~~g~v~q~~~~~~~~tv~ 947 (1106)
..|+++++.+++|+++.|.|++|+|||||+..+++.... ..| .+.+-+......... |..+.... ...
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~--~~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~~- 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT--KTNENVAIFSLEMSAQQLVMRMLCAEGN-------INA- 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH--HSSCCEEEEESSSCHHHHHHHHHHHHHT-------CCH-
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECCCCHHHHHHHHHHHHcC-------CCH-
Confidence 357888888999999999999999999999998873210 012 222222222111111 00000000 000
Q ss_pred HHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh--cCCCeEEEeCCCCC
Q 001291 948 ESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSG 1025 (1106)
Q Consensus 948 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~--~~p~illLDEPTsg 1025 (1106)
+.+ +.. ... ......+.++++.++..++.-.. ..++|.+|.+ ..++.++ .+|+++++|+++.-
T Consensus 261 ~~l------~~g-~l~-~~~~~~~~~a~~~l~~~~l~i~d-----~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~ 325 (454)
T 2r6a_A 261 QNL------RTG-KLT-PEDWGKLTMAMGSLSNAGIYIDD-----TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLI 325 (454)
T ss_dssp HHH------HTS-CCC-HHHHHHHHHHHHHHHSSCEEEEC-----CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGS
T ss_pred HHH------hcC-CCC-HHHHHHHHHHHHHHhcCCEEEEC-----CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHh
Confidence 111 111 122 22233455666666544433221 1258999886 5667776 67999999999987
Q ss_pred CCH--------HHHHHHHHHHHHHHhC-CceEEEEec---------C--ccH-------HHHHhcCeEEEEecC
Q 001291 1026 LDA--------RAAAIVMRTVRNTVDT-GRTVVCTIH---------Q--PSI-------DIFEAFDELFLMKRG 1072 (1106)
Q Consensus 1026 LD~--------~~~~~i~~~l~~~~~~-g~tvi~~tH---------~--~~~-------~~~~~~D~v~~l~~g 1072 (1106)
.+. .....+.+.|+.++++ |++||+++| + |.. .+...+|.+++|.++
T Consensus 326 ~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~ 399 (454)
T 2r6a_A 326 QGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRD 399 (454)
T ss_dssp CCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEET
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecc
Confidence 742 3346777788887744 899999999 2 431 245679999999865
No 271
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.64 E-value=3.8e-09 Score=114.15 Aligned_cols=68 Identities=12% Similarity=0.176 Sum_probs=46.0
Q ss_pred HHHHHHHh--cCCCeEEEeCCCCCC--CHHHHHHHHHHHHHH-HhCCceEEEEecCccHH-------HHHhcCeEEEEec
Q 001291 1004 LTIAVELV--ANPSIIFMDEPTSGL--DARAAAIVMRTVRNT-VDTGRTVVCTIHQPSID-------IFEAFDELFLMKR 1071 (1106)
Q Consensus 1004 l~iA~aL~--~~p~illLDEPTsgL--D~~~~~~i~~~l~~~-~~~g~tvi~~tH~~~~~-------~~~~~D~v~~l~~ 1071 (1106)
+..++.++ .+|+++++|+|++.+ |+.....++..+.++ .+.|+|||+++|..... +...+|.++.|++
T Consensus 117 ~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 117 IEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 33344443 579999999999988 554344444444444 46699999999976521 3467899999975
No 272
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.63 E-value=2.9e-11 Score=133.68 Aligned_cols=142 Identities=15% Similarity=0.121 Sum_probs=92.3
Q ss_pred eEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh---cccceEEEEccCC-CCCCCC
Q 001291 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE---TFARISGYCEQND-IHSPFV 944 (1106)
Q Consensus 869 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~g~v~q~~-~~~~~~ 944 (1106)
..+++++++.+++| ++|+||||||||||+++|+|.... +.+.++|.+.... ...+.+++++|.. ...|.+
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 35789999999999 999999999999999999996542 5788998765321 1223456666653 334445
Q ss_pred CHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC
Q 001291 945 TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1024 (1106)
Q Consensus 945 tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTs 1024 (1106)
++.|++.+....+. .. ... .+....+... ..|||||+||+.|++|+..+|++| |||+.
T Consensus 107 ~~~Deid~~~~~r~-----~~----~~~------~~~~~~~~~l-----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 107 IFFDEVDALCPRRS-----DR----ETG------ASVRVVNQLL-----TEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EEEETCTTTCC------------------------CTTHHHHHH-----HHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred EeeehhhhhhcccC-----CC----cch------HHHHHHHHHH-----HhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 55555533211110 00 000 0112222222 249999999999999999999985 99964
Q ss_pred ------------CCCHHHHHHHHHHH
Q 001291 1025 ------------GLDARAAAIVMRTV 1038 (1106)
Q Consensus 1025 ------------gLD~~~~~~i~~~l 1038 (1106)
--|...+..|++.+
T Consensus 165 r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 165 RPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp STTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred CcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 23677777776654
No 273
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.60 E-value=7.5e-09 Score=121.82 Aligned_cols=53 Identities=15% Similarity=0.102 Sum_probs=49.4
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE 221 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~ 221 (1106)
..+|+|+|+.+++ ++++|+|||||||||||++|+|.++|+ +|+|.++|.++..
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~ 69 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTEAG 69 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTSCS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEccc
Confidence 4589999999999 999999999999999999999999998 9999999988754
No 274
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.59 E-value=2e-08 Score=112.11 Aligned_cols=112 Identities=17% Similarity=0.191 Sum_probs=73.0
Q ss_pred eeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhh
Q 001291 875 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSA 954 (1106)
Q Consensus 875 vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~ 954 (1106)
+++..++|++++|+|+|||||||++..|++.... ..|.+.+.+.+.... ...|
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~~D~~r~-------------------~a~e------ 149 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAADTFRA-------------------AAIE------ 149 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECTTCH-------------------HHHH------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEccccccH-------------------HHHH------
Confidence 4556778999999999999999999999985421 124555544332100 0011
Q ss_pred hhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH---HHHHHHhcCCCeEEEeCCCCCCCHHHH
Q 001291 955 WLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRL---TIAVELVANPSIIFMDEPTSGLDARAA 1031 (1106)
Q Consensus 955 ~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl---~iA~aL~~~p~illLDEPTsgLD~~~~ 1031 (1106)
.+..+.+.+++..+ ..+|+|+.+++ +|++++..+|+++|+|||.. ....
T Consensus 150 ---------------qL~~~~~~~gl~~~----------~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~ 201 (306)
T 1vma_A 150 ---------------QLKIWGERVGATVI----------SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTK 201 (306)
T ss_dssp ---------------HHHHHHHHHTCEEE----------CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCH
T ss_pred ---------------HHHHHHHHcCCcEE----------ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhH
Confidence 12233445555321 13689999999 99999999999999999974 2334
Q ss_pred HHHHHHHHHH
Q 001291 1032 AIVMRTVRNT 1041 (1106)
Q Consensus 1032 ~~i~~~l~~~ 1041 (1106)
..+++.++++
T Consensus 202 ~~l~~eL~~l 211 (306)
T 1vma_A 202 KNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455444443
No 275
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.56 E-value=1.3e-07 Score=105.39 Aligned_cols=128 Identities=18% Similarity=0.104 Sum_probs=84.7
Q ss_pred eeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHH
Q 001291 873 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFY 952 (1106)
Q Consensus 873 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~ 952 (1106)
++++++ +|++++++|+||+||||++..|++.... ..|.+.+.+.+..... +. +.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~--~~~~v~l~~~d~~~~~------------------~~-~q--- 144 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQRPA------------------AR-EQ--- 144 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH--TTCCEEEEECCSSCHH------------------HH-HH---
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEecCCcccHh------------------HH-HH---
Confidence 678888 8999999999999999999999985431 1356666554432110 00 00
Q ss_pred hhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC-CCCCCHHHH
Q 001291 953 SAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP-TSGLDARAA 1031 (1106)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEP-TsgLD~~~~ 1031 (1106)
...+.+..++.-+... ......+.+|.+|+.+...+++++|+||| ++++|....
T Consensus 145 ------------------l~~~~~~~~l~~~~~~-------~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 145 ------------------LRLLGEKVGVPVLEVM-------DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp ------------------HHHHHHHHTCCEEECC-------TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred ------------------HHHhcccCCeEEEEcC-------CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 0112233444322110 11345566788999998899999999999 999999888
Q ss_pred HHHHHHHHHHHhCCceEEEEe
Q 001291 1032 AIVMRTVRNTVDTGRTVVCTI 1052 (1106)
Q Consensus 1032 ~~i~~~l~~~~~~g~tvi~~t 1052 (1106)
..+.+..+.+. ...+++++.
T Consensus 200 ~~l~~~~~~~~-~~~~~lv~~ 219 (295)
T 1ls1_A 200 GELARLKEVLG-PDEVLLVLD 219 (295)
T ss_dssp HHHHHHHHHHC-CSEEEEEEE
T ss_pred HHHHHHhhhcC-CCEEEEEEe
Confidence 88888777653 345555543
No 276
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.55 E-value=5.9e-09 Score=116.74 Aligned_cols=102 Identities=15% Similarity=0.215 Sum_probs=63.3
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEE---cCccCChhc--c-cceEEEEccCCC-----------
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRI---SGYPKKQET--F-ARISGYCEQNDI----------- 939 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i---~g~~~~~~~--~-~~~~g~v~q~~~----------- 939 (1106)
|.+.+|++++|+||||||||||+++|+|...+ ..|+|.+ +|.+..... + .+.+||++|.+.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~--~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKL--RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCC--C-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccc--cccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 34457999999999999999999999997663 4799998 787653211 1 134799999875
Q ss_pred -----CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCC-cccccc
Q 001291 940 -----HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSL 987 (1106)
Q Consensus 940 -----~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~ 987 (1106)
++|.+|+ ||+.|..... ..+....+.++++.++|. +..+..
T Consensus 242 ~~~~~l~~~~~~-~n~~~~~~~~------~~e~~~~v~~~l~~~~L~~~~~~~~ 288 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFSDCNH------VDEPECGVKEAVENGEIAESRYENY 288 (301)
T ss_dssp HHHGGGSTTSSS-CCCSSTTCCS------SSCSSCHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHhccc-ccCcCCCCcC------CCCCCcHHHHHHHcCCCCHHHHHHH
Confidence 3667788 8887652111 112234578999999995 444444
No 277
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.54 E-value=3.5e-08 Score=110.18 Aligned_cols=112 Identities=15% Similarity=0.186 Sum_probs=77.2
Q ss_pred eeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHHH
Q 001291 171 VSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFA 250 (1106)
Q Consensus 171 vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 250 (1106)
+++..++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+.. |. ...|.+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~-----r~--------------~a~eqL--- 151 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTF-----RA--------------AAIEQL--- 151 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTT-----CH--------------HHHHHH---
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccccc-----cH--------------HHHHHH---
Confidence 34556789999999999999999999999998775 677777654321 00 001111
Q ss_pred HHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhhhh
Q 001291 251 ARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKK 330 (1106)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGqkq 330 (1106)
....+.+|++. + ...|||+.+
T Consensus 152 -------------------------------------------------~~~~~~~gl~~-----~-----~~~s~~~~~ 172 (306)
T 1vma_A 152 -------------------------------------------------KIWGERVGATV-----I-----SHSEGADPA 172 (306)
T ss_dssp -------------------------------------------------HHHHHHHTCEE-----E-----CCSTTCCHH
T ss_pred -------------------------------------------------HHHHHHcCCcE-----E-----ecCCccCHH
Confidence 11233445543 1 136899999
Q ss_pred HH---HHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHH
Q 001291 331 RV---TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQN 369 (1106)
Q Consensus 331 Rv---sia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~ 369 (1106)
++ ++++++..+|+++++|+|.. ......+++.|+.+
T Consensus 173 ~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l 211 (306)
T 1vma_A 173 AVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHH
Confidence 99 89999999999999999974 34445555555554
No 278
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.51 E-value=1.2e-07 Score=105.69 Aligned_cols=142 Identities=17% Similarity=0.168 Sum_probs=87.8
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQG 255 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 255 (1106)
++|++++|+|||||||||++..|++.+.+. +| +.+.++.++.. ..++.|.+...++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~~-- 159 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH---------------KKIAFITTDTY---RIAAVEQLKTYAEL-- 159 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC---------------CCEEEEECCCS---STTHHHHHHHHHTT--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC---------------CEEEEEecCcc---cchHHHHHHHHHHh--
Confidence 479999999999999999999999998754 45 24566666541 34566665542211
Q ss_pred CCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhhhhHHHHH
Q 001291 256 VGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTG 335 (1106)
Q Consensus 256 ~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia 335 (1106)
+|++.. + ..+ ++.-+.+++
T Consensus 160 --------------------------------------------------~gl~~~----~------~~~-~~~l~~al~ 178 (296)
T 2px0_A 160 --------------------------------------------------LQAPLE----V------CYT-KEEFQQAKE 178 (296)
T ss_dssp --------------------------------------------------TTCCCC----B------CSS-HHHHHHHHH
T ss_pred --------------------------------------------------cCCCeE----e------cCC-HHHHHHHHH
Confidence 122110 0 012 223355555
Q ss_pred HHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEEE--ecChhHHHhhcCeEEEecCCeEEEE
Q 001291 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHI-NSGTAVISL--LQPAPETYNLFDDIILLSDGQIVYQ 406 (1106)
Q Consensus 336 ~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~-~~~t~ii~i--~q~~~~~~~~~D~vilL~~G~iv~~ 406 (1106)
+ +.+++++|+| |+|+|+.....+.+..+ .... ....+++++ +|...++.+.+|++..+..+.++..
T Consensus 179 ~--~~~~dlvIiD--T~G~~~~~~~~~~el~~-~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 179 L--FSEYDHVFVD--TAGRNFKDPQYIDELKE-TIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp H--GGGSSEEEEE--CCCCCTTSHHHHHHHHH-HSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred H--hcCCCEEEEe--CCCCChhhHHHHHHHHH-HHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 4 4899999999 99999876654444333 2211 111223333 6666778888887766777777753
No 279
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.50 E-value=2.1e-07 Score=106.04 Aligned_cols=71 Identities=20% Similarity=0.176 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcC--CCeEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCceEEEEecCccH-----
Q 001291 1002 KRLTIAVELVAN--PSIIFMDEPTSGL----------DA---RAAAIVMRTVRNT----VDTGRTVVCTIHQPSI----- 1057 (1106)
Q Consensus 1002 qrl~iA~aL~~~--p~illLDEPTsgL----------D~---~~~~~i~~~l~~~----~~~g~tvi~~tH~~~~----- 1057 (1106)
+-+.++++++.+ |+++++||+++.+ |+ ..++.+.+.++++ .+.|+|||+++|....
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 356678888765 9999999999998 32 1223444555554 3559999999996431
Q ss_pred ----------HHHHhcCeEEEEecC
Q 001291 1058 ----------DIFEAFDELFLMKRG 1072 (1106)
Q Consensus 1058 ----------~~~~~~D~v~~l~~g 1072 (1106)
.+...||.++.+.++
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~ 230 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRI 230 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEE
T ss_pred CCCcccCCchHhhhccceEEEEEEe
Confidence 134578988888763
No 280
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.50 E-value=6.1e-10 Score=126.74 Aligned_cols=150 Identities=16% Similarity=0.089 Sum_probs=87.9
Q ss_pred eEEeeeeeeeeeCC-------eEEEEEcCCCCCHHHHHHhhhCCCCC--ceeEEEEEEcCccCCh--hc-ccceEEEEcc
Q 001291 869 LVLLNGVSGAFRPG-------VLTALMGVSGAGKTTLMDVLAGRKTG--GYITGDIRISGYPKKQ--ET-FARISGYCEQ 936 (1106)
Q Consensus 869 ~~~L~~vs~~i~~G-------e~~al~G~nGaGKSTLl~~l~g~~~~--~~~~G~i~i~g~~~~~--~~-~~~~~g~v~q 936 (1106)
..+++++++.+++| +.++|+||||+|||||+++|+|.... .+.+|.+..++.+... .. ..+.++++.|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 34778888888876 88999999999999999999985311 1234444443332211 01 1346889998
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCCCC--ChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001291 937 NDIHSPFVTVYESLFYSAWLRLPPEV--NSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANP 1014 (1106)
Q Consensus 937 ~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p 1014 (1106)
.+.+.+ ++.|++....... ..+. ........+.+.++.+++.. .... +..||+|+|||+.++
T Consensus 111 ~~~l~~--~~~e~L~~~~~~~-~~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 111 IHRLNK--AVEELLYSAIEDF-QIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII------- 174 (334)
T ss_dssp GGGCCH--HHHHHHHHHHHTS-CCCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE-------
T ss_pred hhhcCH--HHHHHHHHHHHhc-ccceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce-------
Confidence 776654 6778774322111 1110 01111222334444444433 2222 235999999998654
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001291 1015 SIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043 (1106)
Q Consensus 1015 ~illLDEPTsgLD~~~~~~i~~~l~~~~~ 1043 (1106)
.+||+.+...+.+.|++.++
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHHH
T ss_pred ---------eeCCCCCHHHHHHHHHHHHH
Confidence 67888888888888887754
No 281
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.49 E-value=1.4e-07 Score=111.80 Aligned_cols=184 Identities=14% Similarity=0.100 Sum_probs=108.3
Q ss_pred ccceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCC
Q 001291 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1106)
.....|+++.+-+++|++++|.|+||+|||||+..+++...+. .| ..+.|++-+ ++
T Consensus 188 tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g---------------~~Vl~~s~E------~s 243 (454)
T 2r6a_A 188 TGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN---------------ENVAIFSLE------MS 243 (454)
T ss_dssp CSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS---------------CCEEEEESS------SC
T ss_pred CCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC---------------CcEEEEECC------CC
Confidence 3456799999889999999999999999999999999875432 22 134555432 34
Q ss_pred HHHHHHHH-HHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccC
Q 001291 243 VRETLAFA-ARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1106)
Q Consensus 243 V~E~l~f~-~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
..+...-. +...++.. .+. ..+... ..+. ..+...++.++..+.. +-+ .
T Consensus 244 ~~~l~~r~~~~~~~~~~--------~~l--~~g~l~--------------~~~~-~~~~~a~~~l~~~~l~---i~d--~ 293 (454)
T 2r6a_A 244 AQQLVMRMLCAEGNINA--------QNL--RTGKLT--------------PEDW-GKLTMAMGSLSNAGIY---IDD--T 293 (454)
T ss_dssp HHHHHHHHHHHHHTCCH--------HHH--HTSCCC--------------HHHH-HHHHHHHHHHHSSCEE---EEC--C
T ss_pred HHHHHHHHHHHHcCCCH--------HHH--hcCCCC--------------HHHH-HHHHHHHHHHhcCCEE---EEC--C
Confidence 43322211 00111100 000 000000 0111 1223334444332221 111 1
Q ss_pred CCCChhhhhHHHHHHHHh--cCCccceeecCCCCCCH--------HHHHHHHHHHHHHHHhcCCeEEEEEec--------
Q 001291 322 RGVSGGQKKRVTTGEMMV--GPALALFMDEISTGLDS--------STTFQIVNCFKQNIHINSGTAVISLLQ-------- 383 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~--~~p~vllLDEptsgLD~--------~~~~~i~~~l~~~~~~~~~t~ii~i~q-------- 383 (1106)
.++|.+|.+ +.++.++ .+|+++++|+++...++ .....+.+.|+.+++..+.++|+ ++|
T Consensus 294 ~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~-~sql~r~~e~~ 370 (454)
T 2r6a_A 294 PSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIA-LSQLSRSVEQR 370 (454)
T ss_dssp TTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEE-EECCCTTSTTC
T ss_pred CCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE-EecCCcccccC
Confidence 348999987 5566665 68999999999998743 23366778888888766555555 555
Q ss_pred ----Ch-------hHHHhhcCeEEEecCCeE
Q 001291 384 ----PA-------PETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 384 ----~~-------~~~~~~~D~vilL~~G~i 403 (1106)
|. ..+...+|.|++|..++.
T Consensus 371 ~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 371 QDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp ---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 21 146778999999987654
No 282
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.48 E-value=3e-07 Score=99.07 Aligned_cols=60 Identities=18% Similarity=0.108 Sum_probs=42.1
Q ss_pred cCCccceeecCCCCC--CHHHHHHHHHHHHHHHHhcCCeEEEEEecChhH--------HHhhcCeEEEecC
Q 001291 340 GPALALFMDEISTGL--DSSTTFQIVNCFKQNIHINSGTAVISLLQPAPE--------TYNLFDDIILLSD 400 (1106)
Q Consensus 340 ~~p~vllLDEptsgL--D~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~--------~~~~~D~vilL~~ 400 (1106)
.+|+++++|+|++.+ |.....+++..+.+.++..+.++++ ++|...+ +.+.+|.|+.|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~-~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIF-VSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEE-EEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEE-EecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 6555566666677666655555555 5555444 4678899999963
No 283
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.48 E-value=6.3e-09 Score=127.82 Aligned_cols=159 Identities=19% Similarity=0.211 Sum_probs=99.3
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCC---------
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHD--------- 235 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d--------- 235 (1106)
..++++++..+++|+.++|+||||+|||||+++|++.+.+. .-|.+.+++.+.+... ..++|++|..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~--p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENM--PRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTS--CEEEEEETTHHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccC--CcEEEEecchHHHHHHHHH
Confidence 45789999999999999999999999999999999999875 2388999887766543 4688988742
Q ss_pred -------------CCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHH
Q 001291 236 -------------NHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYY 302 (1106)
Q Consensus 236 -------------~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~ 302 (1106)
..+..+++.+|+.... +. ..+.+-+ ... . ...
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~-~~--------------------~~~~~~v---------~~~--~---~~~ 167 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDN-CG--------------------RTKAPFI---------DAT--G---AHA 167 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECC-TT--------------------CSSCCEE---------ECT--T---CCH
T ss_pred Hhhccchhhhhhcccccccccccceeecc-cc--------------------CCCCCEE---------EcC--C---CCH
Confidence 0111111111111000 00 0000000 000 0 001
Q ss_pred HHHcCCcccccccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHH
Q 001291 303 LKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQ 368 (1106)
Q Consensus 303 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~ 368 (1106)
-+.+|.-..... ...++|+|++|++..+.....++.+|||||+.. |++.....+.+.|.+
T Consensus 168 ~~L~G~~~~~~~-----~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 168 GALLGDVRHDPF-----QSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHCEECCCCC---------CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred HhcCceEEechh-----hcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 122232111111 124599999999999999999999999999998 898888777777754
No 284
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.43 E-value=1.8e-07 Score=104.15 Aligned_cols=161 Identities=14% Similarity=0.107 Sum_probs=89.7
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCC
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLP 959 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~ 959 (1106)
.+|++++|+|+||+||||++..|++.... ..| +.+.++.++.. ..+..|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~--~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~----- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML--EKH---------------KKIAFITTDTY---RIAAVEQLKTYA----- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH--TTC---------------CCEEEEECCCS---STTHHHHHHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH--hcC---------------CEEEEEecCcc---cchHHHHHHHHH-----
Confidence 47899999999999999999999985321 012 12455555442 234445443211
Q ss_pred CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 001291 960 PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1039 (1106)
Q Consensus 960 ~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~ 1039 (1106)
+..++.... ..+. ..-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+
T Consensus 158 ----------------~~~gl~~~~----------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 158 ----------------ELLQAPLEV----------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp ----------------TTTTCCCCB----------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred ----------------HhcCCCeEe----------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 112221100 1222 23344555 45999999999 99999876665555443
Q ss_pred HHH---hCCceEEE-EecCccHHHHHhcCeEEEEecCCEEEEEecCCC-chhHHHHHHHhCCCCc
Q 001291 1040 NTV---DTGRTVVC-TIHQPSIDIFEAFDELFLMKRGGREVYVGPLGH-HSCHLISYFEVCPDAH 1099 (1106)
Q Consensus 1040 ~~~---~~g~tvi~-~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~-~~~~~~~yf~~~~g~~ 1099 (1106)
-+. ..+.++|+ .+|..+ ++.+.++++..+..+ .++...--+. ....+++.... -|+|
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~-giVltk~D~~~~~g~~~~~~~~-~~~p 268 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVN-QYIFTKIDETTSLGSVFNILAE-SKIG 268 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCC-EEEEECTTTCSCCHHHHHHHHT-CSCC
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCC-EEEEeCCCcccchhHHHHHHHH-HCcC
Confidence 332 11233444 388865 566777776656554 4565432111 22345554442 2444
No 285
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.43 E-value=9.3e-09 Score=107.94 Aligned_cols=69 Identities=17% Similarity=0.261 Sum_probs=46.4
Q ss_pred eEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC---ccceEEEEcCCCCCCCCCCHHHHH
Q 001291 172 SGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV---PERTAAYISQHDNHIGEMTVRETL 247 (1106)
Q Consensus 172 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~E~l 247 (1106)
|+.+++|++++|+||||||||||+++|+|.++ .+.+++....... ....++|++|++..++.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 56778999999999999999999999999863 2455554433221 134578999976555555554443
No 286
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.38 E-value=6.2e-09 Score=109.29 Aligned_cols=69 Identities=22% Similarity=0.175 Sum_probs=44.0
Q ss_pred eeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh---hcccceEEEEccCCCCCCCCCHHHHH
Q 001291 876 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESL 950 (1106)
Q Consensus 876 s~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l 950 (1106)
|+++++|++++|+||||||||||+++|+|..+ .+.+++..... ....+.++|++|++..++.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 56778999999999999999999999999643 23444432211 11234578899876655545554443
No 287
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.36 E-value=2.1e-07 Score=96.57 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 001291 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1041 (1106)
Q Consensus 1002 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~ 1041 (1106)
+...+|++++.+|+++++| ||++|..+...+++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 4577899999999999999 9999999999999888653
No 288
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.35 E-value=6.1e-08 Score=114.87 Aligned_cols=166 Identities=12% Similarity=0.074 Sum_probs=92.3
Q ss_pred eeeeeeeCCeEEEEEcCCCCCHHHHHHhhhC--CCCCceeEEEEEEcCccCChhcccceEEEEccCCCCC-CC-CCHHHH
Q 001291 874 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHS-PF-VTVYES 949 (1106)
Q Consensus 874 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g--~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~-~~-~tv~e~ 949 (1106)
.+++++.++..+.|.|++||||||++++|.. ..... .+++.+.+.+.+...+... ..-+.+. +- ..+.+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~--p~~v~l~liDpK~~el~~~----~~lPhl~~~Vvtd~~~a 232 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ--PEDVRFIMIDPKMLELSVY----EGIPHLLTEVVTDMKDA 232 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC--TTTEEEEEECCSSSGGGGG----TTCTTBSSSCBCSHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC--CceEEEEEECCchhhhhhh----ccCCcccceeecCHHHH
Confidence 3667788899999999999999999999865 11111 1334444433322111100 0011110 11 122222
Q ss_pred HHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH----------HHHHHHhcCCC-eEE
Q 001291 950 LFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRL----------TIAVELVANPS-IIF 1018 (1106)
Q Consensus 950 l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl----------~iA~aL~~~p~-ill 1018 (1106)
...-.++ .++.+++ .+.++..++.++.+..... ...+|+||+|+. .+|+++...|. +++
T Consensus 233 ~~~L~~~-------~~EmerR-~~ll~~~Gv~~i~~yn~~~--~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlv 302 (512)
T 2ius_A 233 ANALRWC-------VNEMERR-YKLMSALGVRNLAGYNEKI--AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVL 302 (512)
T ss_dssp HHHHHHH-------HHHHHHH-HHHHHHTTCSSHHHHHHHH--HHHHHTTCCCBCTTC---------CCBCCCCCEEEEE
T ss_pred HHHHHHH-------HHHHHHH-HHHHHHcCCccHHHHHHHH--HHHhhcCCcccccccccccchhccccccccCCcEEEE
Confidence 2111111 1223333 3678888887654421000 013677877652 35666777888 789
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh----CCceEEEEecCcc
Q 001291 1019 MDEPTSGLDARAAAIVMRTVRNTVD----TGRTVVCTIHQPS 1056 (1106)
Q Consensus 1019 LDEPTsgLD~~~~~~i~~~l~~~~~----~g~tvi~~tH~~~ 1056 (1106)
+||+++-+|.. ...+.+.|.++++ .|.++|++||+|+
T Consensus 303 IDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 303 VDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 99999988843 3445566665543 3679999999997
No 289
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.34 E-value=1.4e-09 Score=118.75 Aligned_cols=75 Identities=23% Similarity=0.367 Sum_probs=53.5
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCC-CCCCCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHD-NHIGEM 241 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~l 241 (1106)
.+++++++.+++| ++|+||||+|||||+++|++.+. .|.|.++|.++..... .+.+++++|.. ...+.+
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 5789999999999 99999999999999999999874 6889998866432111 12344555542 234445
Q ss_pred CHHHHH
Q 001291 242 TVRETL 247 (1106)
Q Consensus 242 TV~E~l 247 (1106)
++.|++
T Consensus 112 ~~~Dei 117 (254)
T 1ixz_A 112 VFIDEI 117 (254)
T ss_dssp EEEETH
T ss_pred EEehhh
Confidence 555555
No 290
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.34 E-value=1.1e-09 Score=121.36 Aligned_cols=76 Identities=22% Similarity=0.361 Sum_probs=54.7
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCC-CCCCCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHD-NHIGEM 241 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~l 241 (1106)
.+++++++.+++| ++|+||||||||||+++|++.+. .|.|.++|.++..... .+.+++++|.. ...+.+
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 5789999999999 89999999999999999999874 6889998876432111 12345555542 234455
Q ss_pred CHHHHHH
Q 001291 242 TVRETLA 248 (1106)
Q Consensus 242 TV~E~l~ 248 (1106)
++.|++.
T Consensus 136 ~~iDeid 142 (278)
T 1iy2_A 136 VFIDEID 142 (278)
T ss_dssp EEEETHH
T ss_pred EehhhhH
Confidence 6666654
No 291
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.33 E-value=7.7e-07 Score=99.08 Aligned_cols=117 Identities=16% Similarity=0.072 Sum_probs=79.8
Q ss_pred eceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHHH
Q 001291 169 KDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLA 248 (1106)
Q Consensus 169 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1106)
+++++. +|++++++|+||+||||++..|+|.+.+. .|+|.+.+.+.... .++ +.+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~~------------------~~~-~ql~ 146 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQRP------------------AAR-EQLR 146 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSCH------------------HHH-HHHH
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCcccH------------------hHH-HHHH
Confidence 678887 99999999999999999999999998765 68888876543210 000 0000
Q ss_pred HHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhh
Q 001291 249 FAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQ 328 (1106)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGq 328 (1106)
.+.+..|++.... + .+-...+
T Consensus 147 ----------------------------------------------------~~~~~~~l~~~~~---~----~~~~p~~ 167 (295)
T 1ls1_A 147 ----------------------------------------------------LLGEKVGVPVLEV---M----DGESPES 167 (295)
T ss_dssp ----------------------------------------------------HHHHHHTCCEEEC---C----TTCCHHH
T ss_pred ----------------------------------------------------HhcccCCeEEEEc---C----CCCCHHH
Confidence 0112234432210 0 0123345
Q ss_pred hhHHHHHHHHhcCCccceeecC-CCCCCHHHHHHHHHHHHH
Q 001291 329 KKRVTTGEMMVGPALALFMDEI-STGLDSSTTFQIVNCFKQ 368 (1106)
Q Consensus 329 kqRvsia~al~~~p~vllLDEp-tsgLD~~~~~~i~~~l~~ 368 (1106)
-+|.+++++...+++++++||| +.++|......+.+..+.
T Consensus 168 l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~ 208 (295)
T 1ls1_A 168 IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEV 208 (295)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhh
Confidence 5688999988899999999999 999998887777766554
No 292
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.33 E-value=6.2e-10 Score=123.27 Aligned_cols=127 Identities=16% Similarity=0.186 Sum_probs=79.2
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh---hcccceEEEEccCCC-CCCCCC
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ---ETFARISGYCEQNDI-HSPFVT 945 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~g~v~q~~~-~~~~~t 945 (1106)
.+++++++.+++| ++|+||||+|||||+++|++... .|.+.+++.+... ....+.+++++|... ..+.++
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 136 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 136 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEE
Confidence 4789999999999 89999999999999999998653 4667787754321 111223455666542 345566
Q ss_pred HHHHHH-HhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001291 946 VYESLF-YSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1022 (1106)
Q Consensus 946 v~e~l~-~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1022 (1106)
+.|++. ++...........+.....+.+++. .|||||+||+.|++|+..+|++ ||++
T Consensus 137 ~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~lsgg~~~~~~i~~a~t~~p~~--ld~~ 194 (278)
T 1iy2_A 137 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPA 194 (278)
T ss_dssp EEETHHHHHCC--------CHHHHHHHHHHHH------------------HHTTCCTTCCEEEEEEESCTTS--SCHH
T ss_pred ehhhhHhhhcccccccCCcchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEecCCchh--CCHh
Confidence 667763 3211110000011122222223221 3899999999999999999986 5655
No 293
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.32 E-value=8.5e-08 Score=99.61 Aligned_cols=43 Identities=9% Similarity=0.077 Sum_probs=35.8
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHH
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQ 368 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~ 368 (1106)
|..-..+.+.+|++++.+|+++++| ||+||.....++++.|.+
T Consensus 146 l~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 146 LRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp GGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4333345678999999999999999 999999999999988765
No 294
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.32 E-value=4.6e-08 Score=115.95 Aligned_cols=166 Identities=11% Similarity=0.030 Sum_probs=89.3
Q ss_pred ceeEEEeCceEEEEEcCCCCCHHHHHHHHhC--CCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCC--CHHH
Q 001291 170 DVSGIVKPGRLTLLLGPPSSGKTTLLLALAG--KLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEM--TVRE 245 (1106)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G--~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l--TV~E 245 (1106)
.+++.+..+..++|.|++||||||+|+.|.. ....+ .|+|.+.+.+..... .+.-..+|++ +|.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~---p~~v~l~liDpK~~e--------l~~~~~lPhl~~~Vvt 227 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ---PEDVRFIMIDPKMLE--------LSVYEGIPHLLTEVVT 227 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC---TTTEEEEEECCSSSG--------GGGGTTCTTBSSSCBC
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC---CceEEEEEECCchhh--------hhhhccCCcccceeec
Confidence 3677888899999999999999999999875 23332 466665554432211 0100112222 2222
Q ss_pred HHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccc--cccCccCCC
Q 001291 246 TLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADT--MVGDEMRRG 323 (1106)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt--~vg~~~~rg 323 (1106)
+...+..... ....++ +.+ ...++..|+.+..+. .+. ..
T Consensus 228 d~~~a~~~L~-----~~~~Em-----------------------------erR-~~ll~~~Gv~~i~~yn~~~~----~~ 268 (512)
T 2ius_A 228 DMKDAANALR-----WCVNEM-----------------------------ERR-YKLMSALGVRNLAGYNEKIA----EA 268 (512)
T ss_dssp SHHHHHHHHH-----HHHHHH-----------------------------HHH-HHHHHHTTCSSHHHHHHHHH----HH
T ss_pred CHHHHHHHHH-----HHHHHH-----------------------------HHH-HHHHHHcCCccHHHHHHHHH----HH
Confidence 3322221100 001111 112 245666777654332 121 13
Q ss_pred CChhhhhHH----------HHHHHHhcCCc-cceeecCCCCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEecChh
Q 001291 324 VSGGQKKRV----------TTGEMMVGPAL-ALFMDEISTGLDSSTTFQIVNCFKQNIHINS--GTAVISLLQPAP 386 (1106)
Q Consensus 324 LSGGqkqRv----------sia~al~~~p~-vllLDEptsgLD~~~~~~i~~~l~~~~~~~~--~t~ii~i~q~~~ 386 (1106)
+||||+||. .+++++...|. ++++||++.-+|.. ...+.+.+.++++... +..++..+|...
T Consensus 269 ~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 269 DRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred hhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 799998863 24556677887 89999999988843 3345555555543322 344445555544
No 295
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.32 E-value=6.9e-08 Score=113.65 Aligned_cols=50 Identities=20% Similarity=0.124 Sum_probs=43.9
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+|+++||+|++ +++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~ 67 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIP--DLTLLNFRNTTE 67 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCC--CTTTCCCCCTTS
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEECCEEc
Confidence 479999999999 99999999999999999999996553 368888888764
No 296
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.31 E-value=1.7e-08 Score=123.89 Aligned_cols=161 Identities=14% Similarity=0.106 Sum_probs=98.4
Q ss_pred CceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCC-------
Q 001291 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDI------- 939 (1106)
Q Consensus 867 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~------- 939 (1106)
+...+++++++.+.+|+.+.|+||||+|||||+++|++..... ..|.+.+.+.+... ....+++|++...
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCcccc--cCCcEEEEecchHHHHHHHH
Confidence 3446889999999999999999999999999999999965432 23778887766542 2345788876421
Q ss_pred ---------------CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 001291 940 ---------------HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRL 1004 (1106)
Q Consensus 940 ---------------~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl 1004 (1106)
....+++.+|+.....-..+...-. ... ....+.++..+..... ..++|+|++|++
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~-~~~---~~~~~L~G~~~~~~~~-----~g~~~~g~~~~i 192 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFID-ATG---AHAGALLGDVRHDPFQ-----SGGLGTPAHERV 192 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEE-CTT---CCHHHHHCEECCCCC---------CCCCGGGGE
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEE-cCC---CCHHhcCceEEechhh-----cCCccccccccc
Confidence 0111111111111000000000000 000 0011122221111111 125899999999
Q ss_pred HHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 001291 1005 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1040 (1106)
Q Consensus 1005 ~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~ 1040 (1106)
..++...+++.+|||||... |++..+..+.++|.+
T Consensus 193 ~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 193 EPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp ECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999999988 899999999888875
No 297
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.28 E-value=8.6e-10 Score=120.33 Aligned_cols=129 Identities=16% Similarity=0.177 Sum_probs=80.0
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh---cccceEEEEccCCC-CCCCCC
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE---TFARISGYCEQNDI-HSPFVT 945 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~g~v~q~~~-~~~~~t 945 (1106)
.+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+.... ...+.+++++|... ..+.++
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 112 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 112 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEE
Confidence 4788999999999 89999999999999999998653 45677777543111 11223455666532 345566
Q ss_pred HHHHH-HHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC
Q 001291 946 VYESL-FYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1024 (1106)
Q Consensus 946 v~e~l-~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTs 1024 (1106)
+.|++ .++...........+...+.+.+++. .|||||+||+.|++|+..+|++ +|++.-
T Consensus 113 ~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~l~g~~~~~~~i~~a~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 113 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 172 (254)
T ss_dssp EEETHHHHHC---------CHHHHHHHHHHHH------------------HHHTCCTTCCEEEEEEESCGGG--SCGGGG
T ss_pred EehhhhhhhcccCccccccchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEccCCchh--CCHHHc
Confidence 66666 33221110000011222222333321 3789999999999999999987 677653
No 298
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.25 E-value=6.1e-07 Score=101.93 Aligned_cols=41 Identities=32% Similarity=0.400 Sum_probs=33.1
Q ss_pred EEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEE-EECC
Q 001291 173 GIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRV-TYNG 216 (1106)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V-~~~G 216 (1106)
+=+++|+++.|.||||||||||+..+++...+. .|.| .+++
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~ 97 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDA 97 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEES
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEec
Confidence 368999999999999999999999999876543 4555 3444
No 299
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.24 E-value=7.6e-07 Score=101.40 Aligned_cols=30 Identities=40% Similarity=0.563 Sum_probs=26.6
Q ss_pred EEEeCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 173 GIVKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+-+++|+++.|.||||||||||+..++...
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999988887654
No 300
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.21 E-value=2.9e-07 Score=98.65 Aligned_cols=40 Identities=23% Similarity=0.191 Sum_probs=23.3
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHh-CCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALA-GKLDP 204 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~-G~~~~ 204 (1106)
.+..+++|+.+++|++++|+||||||||||+++|+ |.+++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 35789999999999999999999999999999999 98753
No 301
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.18 E-value=3.6e-08 Score=105.10 Aligned_cols=59 Identities=17% Similarity=0.148 Sum_probs=40.4
Q ss_pred eEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC-----------ccceEEEEcCC
Q 001291 172 SGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV-----------PERTAAYISQH 234 (1106)
Q Consensus 172 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-----------~~~~~~yv~Q~ 234 (1106)
++.+.+ ++++|+|||||||||||++|+|.+.|+ +|+|.++|.++.... .++.++||+|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455566 799999999999999999999999998 899999998763211 13468888874
No 302
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.14 E-value=1.1e-06 Score=91.68 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001291 1004 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1042 (1106)
Q Consensus 1004 l~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~ 1042 (1106)
...|++++.+|+++++| ||++|......+++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999888887643
No 303
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.06 E-value=1.1e-06 Score=94.07 Aligned_cols=207 Identities=12% Similarity=0.034 Sum_probs=78.5
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhh-CCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHH
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-GRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYE 948 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~-g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e 948 (1106)
+..+++||++++|++++|+||||||||||+++|+ |...+ ..+.+.+...+..... ....+|.+++...+..++..+
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~--~~~~~~~~~~~~~~g~-~~g~~~~~~~~~~~~~~~~~~ 91 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN--IVKSVSVTTRAARKGE-KEGKDYYFVDREEFLRLCSNG 91 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C--EEECCCEESSCCCTTC-CBTTTBEECCHHHHHHHHHTT
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC--cccccccCCCCCCccc-cCCCeEEEecHHHhhhhhhcC
Confidence 4678999999999999999999999999999999 97532 2222222222211110 011234444322211111111
Q ss_pred HHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH-HHH-HHHhcCCCeEEEeCCCCCC
Q 001291 949 SLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRL-TIA-VELVANPSIIFMDEPTSGL 1026 (1106)
Q Consensus 949 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl-~iA-~aL~~~p~illLDEPTsgL 1026 (1106)
++......... .. ......++++++.-. .-+.+... .-...-++++ .-+ ..++..|+..++||++.+.
T Consensus 92 ~~~~~~~~~~~--~~-~~~~~~i~~~~~~~~-~vild~~~------~g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R 161 (231)
T 3lnc_A 92 EIIEHAEVFGN--FY-GVPRKNLEDNVDKGV-STLLVIDW------QGAFKFMEMMREHVVSIFIMPPSMEELRRRLCGR 161 (231)
T ss_dssp CEEEEEEETTE--EE-EEECTTHHHHHHHTC-EEEEECCH------HHHHHHHHHSGGGEEEEEEECSCHHHHHHC----
T ss_pred ceehhhhhccc--cC-CCCHHHHHHHHHcCC-eEEEEcCH------HHHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHc
Confidence 11100000000 00 000111334444311 11111000 0011122332 111 2235566777788999999
Q ss_pred CHHHHHHHHHHHHHHHh-----CCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCCCchhHHHHHHHhCCCC
Q 001291 1027 DARAAAIVMRTVRNTVD-----TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFEVCPDA 1098 (1106)
Q Consensus 1027 D~~~~~~i~~~l~~~~~-----~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~~~~~~~~yf~~~~g~ 1098 (1106)
|..+...+.+.|++... ....+|++.|+++ ++.+..++++-..+ ++..+ ...+-++|.+..|+
T Consensus 162 ~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e-~~~~~l~~~i~~~~-~~~~~-------~~~~~~~~~~~~~~ 229 (231)
T 3lnc_A 162 RADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIE-ETADRISNILRAEQ-MKTCR-------QVGLRELLESRFPI 229 (231)
T ss_dssp ----------CHHHHHHHHTTGGGSSEEEECSSHH-HHHHHHHHHHHHHH-TBGGG-------EESHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHH-HHHHHHHHHHHHHh-hcccc-------CcchhhHhhccCCC
Confidence 98887777766654321 2457888888876 45566666554333 22211 22456677766655
No 304
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.04 E-value=1.9e-07 Score=97.80 Aligned_cols=71 Identities=15% Similarity=0.094 Sum_probs=50.0
Q ss_pred EEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC--ccceEEEEcCCCCCCCCCCHHHHHHHH
Q 001291 173 GIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEMTVRETLAFA 250 (1106)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 250 (1106)
+..++|++++|+||||||||||+++|+|.+ |.+.++|.++.... .+...++++|+....+.+++.+++...
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 96 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDA 96 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHHH
Confidence 556789999999999999999999999974 78899987764211 112457888875555556666666554
No 305
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.03 E-value=4.3e-06 Score=98.75 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCceEEEEecCcc
Q 001291 998 TEQRKRLTIAVELVANPSIIFMDEP----------TSGLDARAAAIVMRTVRNTV----DTGRTVVCTIHQPS 1056 (1106)
Q Consensus 998 ~Gqrqrl~iA~aL~~~p~illLDEP----------TsgLD~~~~~~i~~~l~~~~----~~g~tvi~~tH~~~ 1056 (1106)
+++++|-.+++|....|.|||+||+ ++|.|......+.+++..+- ..+..||.+||+++
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 5778888899999999999999999 44677777777777776653 24678999999975
No 306
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.02 E-value=3e-06 Score=97.09 Aligned_cols=160 Identities=13% Similarity=0.010 Sum_probs=85.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCC--------CCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHHHH
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKLDPS--------LKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAA 251 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~~--------~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~ 251 (1106)
.++|+|+||||||||++.|+|..... ...+|.|.++|.++. ...+.|++.|.+ ...|. . |..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp----~~lve-~--f~~ 250 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIP----PQIVD-A--FFV 250 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCC----GGGHH-H--HHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCC----HHHHH-H--HHH
Confidence 48999999999999999999986410 023789999885431 123455555422 11221 1 111
Q ss_pred HhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhhhhH
Q 001291 252 RCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKR 331 (1106)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGqkqR 331 (1106)
..... ...+....+. + . .+++. ...+....+..+++.+++.+..--.|++. .--+|+|+++|
T Consensus 251 tl~~~-~~aD~il~Vv----D--~-s~~~~---------~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~ 312 (364)
T 2qtf_A 251 TLSEA-KYSDALILVI----D--S-TFSEN---------LLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKK 312 (364)
T ss_dssp HHHGG-GGSSEEEEEE----E--T-TSCHH---------HHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHH
T ss_pred HHHHH-HhCCEEEEEE----E--C-CCCcc---------hHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHH
Confidence 00000 0000000000 0 0 00000 00111123456778888765442333331 12278888888
Q ss_pred HHHH----HHH-hcCCccceeecCCCCCCHHHHHHHHHHHHHHHH
Q 001291 332 VTTG----EMM-VGPALALFMDEISTGLDSSTTFQIVNCFKQNIH 371 (1106)
Q Consensus 332 vsia----~al-~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~ 371 (1106)
+.++ +.+ ..+|++ +|+|++|......+.+.|.+...
T Consensus 313 ~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 313 LDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp HHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 8877 555 333443 89999999999999988877554
No 307
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.97 E-value=1.1e-06 Score=100.85 Aligned_cols=147 Identities=14% Similarity=0.149 Sum_probs=82.9
Q ss_pred EEEEEcCCCCCHHHHHHhhhCCCCC---------ceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHh-
Q 001291 884 LTALMGVSGAGKTTLMDVLAGRKTG---------GYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYS- 953 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~~~~---------~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~- 953 (1106)
.++|+|++|||||||++.|+|.... ++..|.+.++|.+. .+....|++.+.+.. .+ |...-.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v---~l~DT~G~i~~lp~~----lv-e~f~~tl 252 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI---MLVDTVGFIRGIPPQ----IV-DAFFVTL 252 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE---EEEECCCBCSSCCGG----GH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE---EEEeCCCchhcCCHH----HH-HHHHHHH
Confidence 4999999999999999999995421 13568888887543 122334554442211 11 111000
Q ss_pred hhhc--------CC-CCCC--hHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH----HHH-hcCCCeE
Q 001291 954 AWLR--------LP-PEVN--SETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIA----VEL-VANPSII 1017 (1106)
Q Consensus 954 ~~~~--------~~-~~~~--~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA----~aL-~~~p~il 1017 (1106)
..++ .. .+.. .......+.++++.+++.+..--.+... ...+|+++++++.++ +++ ..+|++
T Consensus 253 ~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~- 330 (364)
T 2qtf_A 253 SEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIFDV- 330 (364)
T ss_dssp HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence 0000 00 1111 1222234567777777654320000000 123687888888877 555 334444
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001291 1018 FMDEPTSGLDARAAAIVMRTVRNTVD 1043 (1106)
Q Consensus 1018 lLDEPTsgLD~~~~~~i~~~l~~~~~ 1043 (1106)
+|+|++|..+...+.+.|.+...
T Consensus 331 ---~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 ---IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp ---EECBTTTTBSHHHHHHHHHHHHH
T ss_pred ---EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999887653
No 308
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.95 E-value=2.8e-06 Score=96.53 Aligned_cols=29 Identities=28% Similarity=0.461 Sum_probs=26.5
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
+-+++|+++.|.||+|+|||||+..+++.
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999999864
No 309
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.95 E-value=3.6e-06 Score=105.83 Aligned_cols=75 Identities=12% Similarity=0.119 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCceEEEE-ecCccHHHHHhcCeEEEEe
Q 001291 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCT-IHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 995 ~LS~Gqrqrl~iA~aL~~~p~illLDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~-tH~~~~~~~~~~D~v~~l~ 1070 (1106)
-+|.|+.+|..++..++.++++|++|||.. +||......+++.+.......++|+++ ||+++ .+.+.++...++.
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~~vi~ 266 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDAPLLA 266 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSCCEEE
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCCCccc
Confidence 379999999999999999999999999996 999887766666666554445677775 89875 5667777544443
No 310
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.95 E-value=2.8e-06 Score=87.16 Aligned_cols=36 Identities=28% Similarity=0.237 Sum_probs=33.1
Q ss_pred eceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCC
Q 001291 169 KDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS 205 (1106)
Q Consensus 169 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1106)
+++++.+.+| +++|+||||||||||+++|.+.+.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 6889999999 99999999999999999999987664
No 311
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.89 E-value=1.4e-05 Score=94.30 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=38.4
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCC----------CCCCHHHHHHHHHHHHHHHH--hcCCeEEEEEecChh
Q 001291 326 GGQKKRVTTGEMMVGPALALFMDEIS----------TGLDSSTTFQIVNCFKQNIH--INSGTAVISLLQPAP 386 (1106)
Q Consensus 326 GGqkqRvsia~al~~~p~vllLDEpt----------sgLD~~~~~~i~~~l~~~~~--~~~~t~ii~i~q~~~ 386 (1106)
|+++.|..++++....|.|||+||+- .|.|......+.+++..+-. ...+.+||..++...
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 56788888999999999999999993 35666554444455544321 123566666666653
No 312
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.89 E-value=5.2e-06 Score=86.40 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHH
Q 001291 331 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNI 370 (1106)
Q Consensus 331 Rvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~ 370 (1106)
....|++++.+|.++++| ||++|.....++++.|.+..
T Consensus 129 ~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 129 PTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 356789999999999999 99999999999988776543
No 313
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.87 E-value=5.1e-07 Score=94.54 Aligned_cols=41 Identities=29% Similarity=0.239 Sum_probs=31.2
Q ss_pred eeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 876 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 876 s~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+..++|++++|+|+||||||||+++|++.. |.+.++|.+.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~ 63 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAF 63 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGG
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEccccc
Confidence 3556789999999999999999999999753 5677887654
No 314
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.86 E-value=3.7e-07 Score=97.26 Aligned_cols=59 Identities=17% Similarity=0.138 Sum_probs=38.5
Q ss_pred eeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh-----------hcccceEEEEccC
Q 001291 876 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ-----------ETFARISGYCEQN 937 (1106)
Q Consensus 876 s~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-----------~~~~~~~g~v~q~ 937 (1106)
+++|.+ ++++|+||||||||||+++|+|...+ ..|.|.++|.+... ...++.++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP--DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC--CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc--CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 466666 89999999999999999999996543 35778888765411 1124568999874
No 315
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.85 E-value=4.6e-06 Score=87.23 Aligned_cols=32 Identities=28% Similarity=0.303 Sum_probs=28.2
Q ss_pred EEeCceEEEEEcCCCCCHHHHHHHHhCCCCCC
Q 001291 174 IVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS 205 (1106)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1106)
++++|++++|+||||||||||+++|++.+.|+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 57899999999999999999999999998664
No 316
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.85 E-value=2.2e-05 Score=89.90 Aligned_cols=60 Identities=12% Similarity=0.185 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe--cCcc
Q 001291 995 GLSTEQRKRLTIAVELVANPSIIFMD-EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI--HQPS 1056 (1106)
Q Consensus 995 ~LS~Gqrqrl~iA~aL~~~p~illLD-EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~t--H~~~ 1056 (1106)
.+|++++|++. +.+...++-++++| +|++++|......+.+.+.+... +.++|++. ||+.
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 58999998776 55555677789999 99999999988888877776543 78888888 8864
No 317
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.85 E-value=2.3e-06 Score=96.16 Aligned_cols=81 Identities=15% Similarity=0.023 Sum_probs=62.3
Q ss_pred eeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC-------c-----cceEEEE-cC
Q 001291 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV-------P-----ERTAAYI-SQ 233 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~-----~~~~~yv-~Q 233 (1106)
+++++++.+++|++++|+||||+||||++..|++.+.+. .|+|.+.+.++.... . +..+.++ +|
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~ 170 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKAN 170 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCC
Confidence 457899999999999999999999999999999998775 789999887653211 0 3458899 77
Q ss_pred CCCCCCCCCHHHHHHHH
Q 001291 234 HDNHIGEMTVRETLAFA 250 (1106)
Q Consensus 234 ~d~~~~~lTV~E~l~f~ 250 (1106)
.....|..++.+++...
T Consensus 171 ~~~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 171 KLNADPASVVFDAIKKA 187 (320)
T ss_dssp STTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 65555555677777654
No 318
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.79 E-value=1.3e-05 Score=90.26 Aligned_cols=140 Identities=18% Similarity=0.166 Sum_probs=88.4
Q ss_pred ccceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCC
Q 001291 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1106)
...+-|+.+.+-++||+++.|.|+||+|||||+.-++...... | ..+.|++= +++
T Consensus 31 TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~----------g---------~~Vl~fSl------Ems 85 (338)
T 4a1f_A 31 TGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALND----------D---------RGVAVFSL------EMS 85 (338)
T ss_dssp CSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT----------T---------CEEEEEES------SSC
T ss_pred CCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc----------C---------CeEEEEeC------CCC
Confidence 3456788888889999999999999999999999888653211 1 23555543 355
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCC
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1106)
..+...=.... ...+.+....+ |
T Consensus 86 ~~ql~~Rlls~-------------------------------------------------~~~v~~~~l~~---g----- 108 (338)
T 4a1f_A 86 AEQLALRALSD-------------------------------------------------LTSINMHDLES---G----- 108 (338)
T ss_dssp HHHHHHHHHHH-------------------------------------------------HHCCCHHHHHH---T-----
T ss_pred HHHHHHHHHHH-------------------------------------------------hhCCCHHHHhc---C-----
Confidence 44432210000 00000000001 2
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC
Q 001291 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 400 (1106)
.||+++.+|++.|...+.++++++.|+|... ..+|...++++.+..++..+|++ |.+-+|..
T Consensus 109 ~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVI-----------DyLqlm~~ 170 (338)
T 4a1f_A 109 RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFI-----------DYLQLMSG 170 (338)
T ss_dssp CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEE-----------EEEECCCT
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEE-----------echHHhcC
Confidence 3999999999999999999999999998643 23555566665544424555544 77777654
No 319
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.79 E-value=9.6e-06 Score=91.41 Aligned_cols=128 Identities=13% Similarity=0.147 Sum_probs=78.9
Q ss_pred EeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHH
Q 001291 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESL 950 (1106)
Q Consensus 871 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l 950 (1106)
-|+.+..-+++|+++.|.|++|+|||||+.-++.... . .| ..+.|+.- .++..+-.
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a---~------~g---------~~Vl~fSl------Ems~~ql~ 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL---N------DD---------RGVAVFSL------EMSAEQLA 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH---H------TT---------CEEEEEES------SSCHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---H------cC---------CeEEEEeC------CCCHHHHH
Confidence 4666667799999999999999999999988875211 0 11 11223221 13332211
Q ss_pred HHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q 001291 951 FYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1030 (1106)
Q Consensus 951 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~ 1030 (1106)
.++......+++..+.+ ..||.++.+|+..|...+.++++.+.|+|...+|
T Consensus 91 ------------------~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~--- 141 (338)
T 4a1f_A 91 ------------------LRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE--- 141 (338)
T ss_dssp ------------------HHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH---
T ss_pred ------------------HHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH---
Confidence 11111111222222222 1499999999999999999999999999876543
Q ss_pred HHHHHHHHHHHHh-C-CceEEEEec
Q 001291 1031 AAIVMRTVRNTVD-T-GRTVVCTIH 1053 (1106)
Q Consensus 1031 ~~~i~~~l~~~~~-~-g~tvi~~tH 1053 (1106)
.|...++++.+ . |..+|+|-|
T Consensus 142 --~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 142 --QIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp --HHHHHHHHHHHHCTTEEEEEEEE
T ss_pred --HHHHHHHHHHHhcCCCCEEEEec
Confidence 44455555543 3 577777743
No 320
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.75 E-value=5.8e-06 Score=85.37 Aligned_cols=28 Identities=36% Similarity=0.533 Sum_probs=25.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCCCC
Q 001291 178 GRLTLLLGPPSSGKTTLLLALAGKLDPS 205 (1106)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1106)
|++++|+||||||||||+++|+|.+++.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~ 28 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCcc
Confidence 5789999999999999999999998643
No 321
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.72 E-value=5.6e-07 Score=106.92 Aligned_cols=49 Identities=33% Similarity=0.537 Sum_probs=42.6
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE 221 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~ 221 (1106)
.+++++++.+++| ++|+||||+|||||+++|+|... .|.|.++|.++.+
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVE 102 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTS
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHH
Confidence 4688999999999 89999999999999999999864 6889999877643
No 322
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.72 E-value=1.3e-05 Score=83.73 Aligned_cols=40 Identities=28% Similarity=0.056 Sum_probs=25.0
Q ss_pred ccceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
....+++|||+.+++|+.++|+|||||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4457999999999999999999999999999999999875
No 323
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.68 E-value=2.5e-06 Score=92.76 Aligned_cols=63 Identities=17% Similarity=0.058 Sum_probs=46.7
Q ss_pred eeeceeEEEeCceEEEEEcCCCCCHHHHHHHHh---CCCCCCCCceeEEE--------ECCccCCCCC----ccceEEEE
Q 001291 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALA---GKLDPSLKVSGRVT--------YNGHNMDEFV----PERTAAYI 231 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~---G~~~~~~~~~G~V~--------~~G~~~~~~~----~~~~~~yv 231 (1106)
++++.+ ++|++++|+|||||||||++++|+ |...++ +|.|. .+|.++.... ..+.++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 455544 789999999999999999999999 988777 89998 8887764321 12467788
Q ss_pred cCCC
Q 001291 232 SQHD 235 (1106)
Q Consensus 232 ~Q~d 235 (1106)
+|.+
T Consensus 93 ~~~~ 96 (252)
T 4e22_A 93 FVSQ 96 (252)
T ss_dssp EEEE
T ss_pred EecC
Confidence 8753
No 324
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.65 E-value=3e-06 Score=91.74 Aligned_cols=51 Identities=25% Similarity=0.392 Sum_probs=34.7
Q ss_pred eeeecce-eeeeeccchhhhcccCCCceEEeeeeeeeeeC---CeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 843 SLTFDEV-VYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRP---GVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 843 ~l~f~~v-~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~---Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
.+.++|+ +++++ +...+|+|+||+|++ |++++|+|++||||||+.++|++.
T Consensus 17 ~l~~~~~~~~~~~------------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 17 LLETGSLLHSPFD------------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp ---------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEcceeeEEec------------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4677787 76652 124589999999999 999999999999999999999874
No 325
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.62 E-value=2.4e-06 Score=89.38 Aligned_cols=52 Identities=25% Similarity=0.348 Sum_probs=42.3
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEE--EECCccCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRV--TYNGHNMD 220 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V--~~~G~~~~ 220 (1106)
.+..++++...++|++++|+||||||||||+++|++.+. . .|.+ .++|.++.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~---~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-Q---KGKLCYILDGDNVR 65 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-H---TTCCEEEEEHHHHT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-h---cCceEEEecCchhh
Confidence 445566677778999999999999999999999999886 3 5776 88876553
No 326
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.61 E-value=1.5e-05 Score=98.47 Aligned_cols=133 Identities=15% Similarity=0.103 Sum_probs=70.6
Q ss_pred eeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh---hcccceEEEEccCCCCCCCCCHHHHHHH
Q 001291 876 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLFY 952 (1106)
Q Consensus 876 s~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~ 952 (1106)
|+.+++|..++|+|++|+|||||++.|++....-...|+| .+|..... ....+.+++..|...+..
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~---------- 71 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLF---------- 71 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEE----------
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEee----------
Confidence 3567889999999999999999999999632211123444 34433211 111122222222111100
Q ss_pred hhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH
Q 001291 953 SAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1032 (1106)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~ 1032 (1106)
.......+..||-..++ .......-..+.-++++| |+.|+++.+..
T Consensus 72 ----------------------------~~~~~nliDTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~ 117 (665)
T 2dy1_A 72 ----------------------------RGHRVFLLDAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTER 117 (665)
T ss_dssp ----------------------------TTEEEEEEECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH
T ss_pred ----------------------------CCEEEEEEeCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH
Confidence 00111111122222222 112222335677889999 99999988774
Q ss_pred HHHHHHHHHHhCCceEEEEecCccH
Q 001291 1033 IVMRTVRNTVDTGRTVVCTIHQPSI 1057 (1106)
Q Consensus 1033 ~i~~~l~~~~~~g~tvi~~tH~~~~ 1057 (1106)
.+ +.+.+.|.++|++.|.++.
T Consensus 118 ~~----~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 118 AW----TVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp HH----HHHHHTTCCEEEEEECGGG
T ss_pred HH----HHHHHccCCEEEEecCCch
Confidence 33 2333458889999998763
No 327
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.57 E-value=0.00012 Score=83.78 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-ceEEEEec
Q 001291 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIH 1053 (1106)
Q Consensus 996 LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g-~tvi~~tH 1053 (1106)
.+..++++..+++..+.+|+++++.-..+..|... ...++.++.+...| ++|+++++
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 46788899999999999999777764334455443 34456666665555 57777776
No 328
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.55 E-value=2.7e-05 Score=79.68 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=29.3
Q ss_pred eeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 873 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 873 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
+++++.+.+| +++|+||||||||||+++|.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999 9999999999999999999874
No 329
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.54 E-value=5.4e-07 Score=107.04 Aligned_cols=75 Identities=21% Similarity=0.237 Sum_probs=49.7
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh---cccceEEEEccCCC-CCCCCC
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE---TFARISGYCEQNDI-HSPFVT 945 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~g~v~q~~~-~~~~~t 945 (1106)
.+++++++.+++| +.|+||||+|||||+++|++... .+.+.+++.+.... ...+.++.++|... ..+.+.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il 127 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 127 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEE
Confidence 3578899999999 89999999999999999998643 35677887553211 11122345565543 234445
Q ss_pred HHHHH
Q 001291 946 VYESL 950 (1106)
Q Consensus 946 v~e~l 950 (1106)
+.|++
T Consensus 128 ~IDEI 132 (499)
T 2dhr_A 128 FIDEI 132 (499)
T ss_dssp EEECG
T ss_pred EEehH
Confidence 55555
No 330
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.54 E-value=1.5e-05 Score=83.53 Aligned_cols=71 Identities=6% Similarity=0.036 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHH-HHHhcCeEEEEe
Q 001291 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID-IFEAFDELFLMK 1070 (1106)
Q Consensus 996 LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~-~~~~~D~v~~l~ 1070 (1106)
.+.|+.+|..++..+..+|..+..+ ++.++|.....+.+.++.. .+.+||+.+|.+... +...||.++++.
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 3678888999988888877643322 3455666666665555432 356888888876421 245689988885
No 331
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.52 E-value=3.5e-05 Score=80.32 Aligned_cols=37 Identities=30% Similarity=0.173 Sum_probs=23.8
Q ss_pred eEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 869 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
...++||||.+++|++++|+|++||||||+.+.|++.
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4589999999999999999999999999999999864
No 332
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.51 E-value=3.2e-05 Score=79.28 Aligned_cols=37 Identities=16% Similarity=0.168 Sum_probs=30.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEC
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYN 215 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~ 215 (1106)
+|++++|+||||||||||+++|++.+++. ..|.|.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~t 40 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPHT 40 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeecc
Confidence 68999999999999999999999987642 35666543
No 333
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.50 E-value=0.00039 Score=79.86 Aligned_cols=44 Identities=9% Similarity=0.033 Sum_probs=35.5
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCceEEEEecCcc
Q 001291 1012 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TGRTVVCTIHQPS 1056 (1106)
Q Consensus 1012 ~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~---~g~tvi~~tH~~~ 1056 (1106)
.+|.+|++||+..- |......+.+++.+... .+.++|+++|+++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45789999999876 88888888888866654 5788999999874
No 334
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.46 E-value=6.1e-05 Score=94.65 Aligned_cols=78 Identities=15% Similarity=0.185 Sum_probs=58.9
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe-cCC
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEIST-GLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL-SDG 401 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEpts-gLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL-~~G 401 (1106)
+|+|+.+|..++..++.+++++++|||.. +||......+++.+.... ....+++++.+++...+.+++++..++ ..|
T Consensus 191 ~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~~l~~~~~~~~vi~v~g 269 (773)
T 2xau_A 191 MTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAEKFQRYFNDAPLLAVPG 269 (773)
T ss_dssp EEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCHHHHHHTTSCCEEECCC
T ss_pred ECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccHHHHHHHhcCCCcccccC
Confidence 79999999999999999999999999996 999887777766665432 123456666788888888888753333 344
Q ss_pred e
Q 001291 402 Q 402 (1106)
Q Consensus 402 ~ 402 (1106)
+
T Consensus 270 r 270 (773)
T 2xau_A 270 R 270 (773)
T ss_dssp C
T ss_pred c
Confidence 3
No 335
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.46 E-value=8.2e-06 Score=88.32 Aligned_cols=39 Identities=44% Similarity=0.485 Sum_probs=36.3
Q ss_pred ceeeeceeEEEeC---ceEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 165 LTILKDVSGIVKP---GRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 165 ~~iL~~vs~~i~~---G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
.++|+|+|+.+++ |+.++|+|++||||||+.++|++.+.
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4699999999999 99999999999999999999998753
No 336
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.41 E-value=4.1e-05 Score=81.83 Aligned_cols=39 Identities=21% Similarity=0.097 Sum_probs=33.9
Q ss_pred EEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccC
Q 001291 174 IVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNM 219 (1106)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~ 219 (1106)
..++|++++|.|++|||||||+++|+|. .|+|.+++.+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 4578999999999999999999999997 47788887654
No 337
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.39 E-value=4.4e-05 Score=78.69 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCCHHHHHHhhhCCCC
Q 001291 882 GVLTALMGVSGAGKTTLMDVLAGRKT 907 (1106)
Q Consensus 882 Ge~~al~G~nGaGKSTLl~~l~g~~~ 907 (1106)
|++++|+||||||||||+++|+|..+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999654
No 338
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.39 E-value=2e-05 Score=85.62 Aligned_cols=57 Identities=23% Similarity=0.140 Sum_probs=43.4
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhh---CCCCCceeEEEEE--------EcCccCCh----hcccceEEEEccCC
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGDIR--------ISGYPKKQ----ETFARISGYCEQND 938 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~---g~~~~~~~~G~i~--------i~g~~~~~----~~~~~~~g~v~q~~ 938 (1106)
++|++++|+|||||||||++++|+ |... +..|.+. .+|.+... ..+++.+++++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 789999999999999999999999 8654 4567777 77776532 23445678888643
No 339
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.39 E-value=0.00017 Score=80.26 Aligned_cols=64 Identities=9% Similarity=0.064 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHHHh--cCCCeEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-Cc--eEEEEecCccHHHHHhcCeEE
Q 001291 996 LSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDARA-AAIVMRTVRNTVDT-GR--TVVCTIHQPSIDIFEAFDELF 1067 (1106)
Q Consensus 996 LS~Gqrqrl~iA~aL~--~~p~illLDEPTsgLD~~~-~~~i~~~l~~~~~~-g~--tvi~~tH~~~~~~~~~~D~v~ 1067 (1106)
+|.|++ .+++.+. ..|.|+++ +.+|... ...+.+.+.++.+. |. .+.+++|+-. .+.+.+|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHH
Confidence 888886 4566666 67889998 8999876 66777888877653 43 5667777655 3556666554
No 340
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.37 E-value=6.1e-05 Score=78.54 Aligned_cols=29 Identities=31% Similarity=0.383 Sum_probs=25.8
Q ss_pred eeeCCeEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 878 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 878 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
+|++|++++|+||||||||||+++|++..
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 57899999999999999999999999875
No 341
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.37 E-value=4.4e-05 Score=81.61 Aligned_cols=42 Identities=21% Similarity=0.201 Sum_probs=34.6
Q ss_pred eeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 875 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 875 vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
-+...++|++++|+|+||||||||+++|+|. .|.|.+.+.|.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 3456679999999999999999999999986 25577777664
No 342
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.37 E-value=2.9e-05 Score=87.21 Aligned_cols=50 Identities=20% Similarity=0.141 Sum_probs=39.1
Q ss_pred EeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 871 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
++++++|.+++|++++|+|+||+||||++..|++.... ..|.|.+.+.+.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid~D~ 143 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAAADT 143 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCC
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCC
Confidence 34789999999999999999999999999999985321 135677766654
No 343
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.36 E-value=7.5e-05 Score=78.45 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=27.3
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCCCC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999876
No 344
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.34 E-value=6.9e-05 Score=76.80 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEE
Q 001291 881 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRI 917 (1106)
Q Consensus 881 ~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i 917 (1106)
+|++++|+||||||||||++.|++..++. ..|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~-~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDR-FAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTT-EECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCcc-EEEeeec
Confidence 68999999999999999999999854321 3455444
No 345
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.33 E-value=0.00025 Score=79.47 Aligned_cols=39 Identities=28% Similarity=0.285 Sum_probs=33.7
Q ss_pred ccceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCC
Q 001291 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
...+-|+++.+-+++|+++.|.|+||+|||||+.-++..
T Consensus 53 TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 53 SGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp CSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 345678888888999999999999999999999888754
No 346
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.33 E-value=0.00095 Score=73.81 Aligned_cols=73 Identities=23% Similarity=0.271 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----CCceEEEEecCcc---HHH
Q 001291 997 STEQRKRLTIAVELVANPSIIFMDEPTSGLDAR----------AAAIVMRTVRNTVD----TGRTVVCTIHQPS---IDI 1059 (1106)
Q Consensus 997 S~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~----------~~~~i~~~l~~~~~----~g~tvi~~tH~~~---~~~ 1059 (1106)
+++++.+..++.+...+|.+||+||+.+-++.. ....+...+..... .+..||.+|++++ ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 457777778888888899999999998776532 22234444443321 2356788888753 234
Q ss_pred HHhcCeEEEE
Q 001291 1060 FEAFDELFLM 1069 (1106)
Q Consensus 1060 ~~~~D~v~~l 1069 (1106)
...|++.+.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 4456655443
No 347
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.31 E-value=4.4e-05 Score=79.72 Aligned_cols=41 Identities=24% Similarity=0.102 Sum_probs=34.6
Q ss_pred EeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCcc
Q 001291 175 VKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN 218 (1106)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 218 (1106)
.++|++++|+||||||||||++.|++.+.+. .|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEeccC
Confidence 4678999999999999999999999988665 6777776544
No 348
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.30 E-value=8.1e-05 Score=77.83 Aligned_cols=69 Identities=12% Similarity=0.108 Sum_probs=38.4
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHH--HhhcCeEEEec
Q 001291 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPET--YNLFDDIILLS 399 (1106)
Q Consensus 325 SGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~--~~~~D~vilL~ 399 (1106)
+.|+.+|..+++.++.+|..+.++ .+.+++.....+.+.++.. .++. ++.-.+...+. ...||.+++|+
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~-vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPY-TLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSE-EEEECTTTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCE-EEEEechhhhcCcHhhCCEEEEEE
Confidence 678999999999999988765544 2345565555555444321 2344 44333444443 56788887773
No 349
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.28 E-value=3.1e-05 Score=88.74 Aligned_cols=44 Identities=34% Similarity=0.329 Sum_probs=39.4
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEE
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTY 214 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~ 214 (1106)
..+|+++|+.+++|++++|+||||||||||+++|+|.. .|++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 46899999999999999999999999999999999853 577655
No 350
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.27 E-value=0.00028 Score=79.18 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=30.6
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
.-|+++.+-+++|+++.|.|++|+|||||+..++.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 35777777899999999999999999999888774
No 351
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.26 E-value=3.5e-05 Score=80.35 Aligned_cols=49 Identities=22% Similarity=0.238 Sum_probs=37.9
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEE--EEcCcc
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDI--RISGYP 921 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i--~i~g~~ 921 (1106)
...+..++..++|++++|+|+||||||||.+.|++... ..|.+ .++|.+
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~ 63 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDN 63 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHH
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCch
Confidence 34566777788999999999999999999999998542 12444 777654
No 352
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.26 E-value=7.9e-05 Score=75.66 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=30.5
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCcc
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN 218 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 218 (1106)
.+|++++|+||||||||||+++|++.+ |.+.+++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCcc
Confidence 468999999999999999999999863 667777644
No 353
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.25 E-value=0.00055 Score=78.12 Aligned_cols=55 Identities=7% Similarity=0.130 Sum_probs=41.3
Q ss_pred CChhhhhHHHHHHHHhcCCccceee-cCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMD-EISTGLDSSTTFQIVNCFKQNIHINSGTAVISL 381 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLD-EptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i 381 (1106)
+|+|++|++. +.+...++-++++| ++.+++|......+++.++.... +.+++++.
T Consensus 232 ~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~ 287 (357)
T 2e87_A 232 RNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVI 287 (357)
T ss_dssp SCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEE
T ss_pred hhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 7999998876 55556778889999 99999999988888777765421 45555544
No 354
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.24 E-value=8.3e-05 Score=77.16 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=25.9
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
.+|++++|+||||||||||++.|++.++
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3799999999999999999999999865
No 355
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.24 E-value=0.0011 Score=75.25 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=26.0
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
+-+++|+++.|.||+|+|||||+..++.
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999999998876
No 356
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.21 E-value=0.00016 Score=75.56 Aligned_cols=30 Identities=30% Similarity=0.200 Sum_probs=27.0
Q ss_pred EEeCceEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 174 IVKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
.+++|++++|+|+||||||||++.|++.+.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 467899999999999999999999999763
No 357
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.20 E-value=0.0016 Score=71.89 Aligned_cols=27 Identities=44% Similarity=0.674 Sum_probs=23.9
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
.++.-++|.||||+|||||++++++.+
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 356788999999999999999999865
No 358
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.14 E-value=0.00031 Score=80.31 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=27.5
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
..+|+++++.++ .++|+|++|||||||+++|.|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 458999999998 8999999999999999999994
No 359
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.12 E-value=6.6e-05 Score=86.01 Aligned_cols=156 Identities=12% Similarity=0.056 Sum_probs=84.4
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCC-CCCCCHHH
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIH-SPFVTVYE 948 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~-~~~~tv~e 948 (1106)
.+++++++.+++|++++|+||||||||||+++|+|.. .|.+.....+... +...+|+++|.... ....+.
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~~~~~~~~--~~~~lg~~~q~~~~l~dd~~~-- 227 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLPLDR--LNFELGVAIDQFLVVFEDVKG-- 227 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSCTTT--HHHHHGGGTTCSCEEETTCCC--
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEEEeccchh--HHHHHHHhcchhHHHHHHHHH--
Confidence 4789999999999999999999999999999999853 2444331212111 11124566665432 112221
Q ss_pred HHHHhhh-hcCCCCCChHHHHHHHHHHHHH---cCCCc-cc---ccccC----CCCCCCCCHHHHHHHHHHHHHhcCCCe
Q 001291 949 SLFYSAW-LRLPPEVNSETRKMFIEEVMEL---VELKP-LR---QSLVG----LPGVNGLSTEQRKRLTIAVELVANPSI 1016 (1106)
Q Consensus 949 ~l~~~~~-~~~~~~~~~~~~~~~v~~~l~~---~~l~~-~~---~~~~~----~~g~~~LS~Gqrqrl~iA~aL~~~p~i 1016 (1106)
... .+.............+...++- +-+.. .. +.+.. ......+++|+++|+..+++++.+|++
T Consensus 228 ----~~~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDL 303 (377)
T 1svm_A 228 ----TGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYL 303 (377)
T ss_dssp ----STTTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHH
T ss_pred ----HHHHHhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCe
Confidence 111 0100000000011122333321 00110 00 10000 001235899999999998888889998
Q ss_pred EE-EeCCCCCCCHHHHHHHHHHHHHHHhCCceEE
Q 001291 1017 IF-MDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1049 (1106)
Q Consensus 1017 ll-LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi 1049 (1106)
++ ||+|+. ..++++.++|+++.
T Consensus 304 liyLd~~~~-----------~l~~RL~~Rg~t~~ 326 (377)
T 1svm_A 304 KHCLERSEF-----------LLEKRIIQSGIALL 326 (377)
T ss_dssp HHHHHTCTH-----------HHHTTCTTCHHHHH
T ss_pred EEEEeCCHH-----------HHHHHHHHcCccHH
Confidence 76 999986 23455555565543
No 360
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.12 E-value=5.1e-05 Score=93.82 Aligned_cols=47 Identities=34% Similarity=0.282 Sum_probs=34.2
Q ss_pred EEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCC
Q 001291 173 GIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE 221 (1106)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~ 221 (1106)
+.+++|+.++|+|++|+|||||++.|++...+. ...|+| .+|..+.+
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~~d 50 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTTTD 50 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCSSC
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCccccc
Confidence 456789999999999999999999999765431 226777 56654433
No 361
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.11 E-value=0.00019 Score=75.32 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=25.7
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhCCCC
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAGRKT 907 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g~~~ 907 (1106)
++|++++|+||||||||||++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999999998754
No 362
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.08 E-value=0.00024 Score=70.40 Aligned_cols=28 Identities=29% Similarity=0.698 Sum_probs=23.2
Q ss_pred eeeeeeCCeEEEEEcCCCCCHHHHHHhhh
Q 001291 875 VSGAFRPGVLTALMGVSGAGKTTLMDVLA 903 (1106)
Q Consensus 875 vs~~i~~Ge~~al~G~nGaGKSTLl~~l~ 903 (1106)
.++.+.+| +++|+|||||||||++++|.
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34555555 89999999999999999986
No 363
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.07 E-value=0.00029 Score=69.87 Aligned_cols=30 Identities=37% Similarity=0.508 Sum_probs=24.8
Q ss_pred ceeEEEeCceEEEEEcCCCCCHHHHHHHHhC
Q 001291 170 DVSGIVKPGRLTLLLGPPSSGKTTLLLALAG 200 (1106)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G 200 (1106)
+.++.+.+| +++|+|||||||||+|.+|.-
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 445556665 999999999999999999873
No 364
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.04 E-value=9.7e-05 Score=88.79 Aligned_cols=42 Identities=33% Similarity=0.412 Sum_probs=36.1
Q ss_pred EEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCcee-EEE-ECCcc
Q 001291 174 IVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSG-RVT-YNGHN 218 (1106)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G-~V~-~~G~~ 218 (1106)
.+++|++++|+|+||||||||+++|+|.+.+. +| +|. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcH
Confidence 47799999999999999999999999999876 65 674 77744
No 365
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.04 E-value=0.0013 Score=74.05 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=25.9
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
+-+++|+++.|.|++|+|||||...++.
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHH
Confidence 5789999999999999999999988875
No 366
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.03 E-value=4.9e-05 Score=85.10 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=23.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
+++|+||||||||||+++|++.+..
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 8999999999999999999998763
No 367
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.99 E-value=0.00021 Score=72.17 Aligned_cols=27 Identities=37% Similarity=0.538 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999864
No 368
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.98 E-value=0.0028 Score=71.28 Aligned_cols=35 Identities=29% Similarity=0.339 Sum_probs=29.1
Q ss_pred eeecee-EEEeCceEEEEEcCCCCCHHHHHHHHhCC
Q 001291 167 ILKDVS-GIVKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 167 iL~~vs-~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
.|+.+- +-+++|+++.|.||||||||||+..++..
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 344432 57899999999999999999999988865
No 369
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.86 E-value=0.00036 Score=72.32 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=24.7
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
.+|++++|+||||||||||++.|++..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 479999999999999999999999754
No 370
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.86 E-value=0.00098 Score=78.30 Aligned_cols=71 Identities=15% Similarity=0.210 Sum_probs=47.8
Q ss_pred cCCCeEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEE-EecCCEEEEEecCCC
Q 001291 1012 ANPSIIFMDEPTSGLDA-RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL-MKRGGREVYVGPLGH 1083 (1106)
Q Consensus 1012 ~~p~illLDEPTsgLD~-~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~-l~~gG~~~~~G~~~~ 1083 (1106)
.+|++||+||+..-.+. .++..+..++..+.+.|+.||+++|++..++....+++.- + ..|.++..+++..
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~-~~g~~i~l~~p~~ 265 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRF-QMGLVAKLEPPDE 265 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHH-HSSBCCBCCCCCH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhc-cCCeEEEeCCCCH
Confidence 38999999999887664 6778888999888878999999999854221111122211 2 2356666666653
No 371
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.83 E-value=0.0051 Score=69.64 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=28.8
Q ss_pred eecee-EEEeCceEEEEEcCCCCCHHHHHHHHhCC
Q 001291 168 LKDVS-GIVKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 168 L~~vs-~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
|+.+- +-+++|+++.|.||||||||||+..++..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44433 56899999999999999999999998875
No 372
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.81 E-value=0.00028 Score=79.68 Aligned_cols=51 Identities=16% Similarity=0.230 Sum_probs=42.8
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEee--------------eeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLN--------------GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~--------------~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
.+.|+|+++.++. .+..|+ |+.+.+.+|+.++|+||+|+|||||++.|++.
T Consensus 133 ri~Fe~ltp~yP~------------er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 133 KILFENLTPLHAN------------SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp SCCTTTSCEESCC------------SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred CceeccccccCCC------------CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 4678888877653 234667 89999999999999999999999999999873
No 373
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.78 E-value=0.00047 Score=69.86 Aligned_cols=36 Identities=28% Similarity=0.345 Sum_probs=29.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
.+|++++|+|+|||||||+.+.|++.. |.+.+++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCcc
Confidence 469999999999999999999998742 445666644
No 374
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.74 E-value=0.0019 Score=75.10 Aligned_cols=25 Identities=40% Similarity=0.422 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 881 PGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 881 ~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
++.+++++|++|+||||++..|++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999863
No 375
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.74 E-value=0.00055 Score=78.29 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=23.1
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
.++..+.|.||+|+|||||++.+++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45778999999999999999999874
No 376
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.73 E-value=0.00012 Score=83.18 Aligned_cols=48 Identities=21% Similarity=0.173 Sum_probs=39.9
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNG 216 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G 216 (1106)
.+++++++.+.+|.+++|+|+||+|||||++.|+|.+.+. .|+|.+-+
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~ 91 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIA 91 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEe
Confidence 4777888888999999999999999999999999987654 55565544
No 377
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.72 E-value=0.00034 Score=79.57 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=33.8
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNM 219 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~ 219 (1106)
+++..++|+|+||||||||++.|+|.+.+. .|+|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEeecC
Confidence 467899999999999999999999987665 67777766543
No 378
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.70 E-value=0.0012 Score=83.37 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=27.9
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhhCCCC
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 907 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~ 907 (1106)
+.+++|+.+.|+||||+|||||+++|++...
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 4678999999999999999999999998653
No 379
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.68 E-value=0.00022 Score=83.83 Aligned_cols=47 Identities=11% Similarity=0.118 Sum_probs=32.0
Q ss_pred cCCccceeecCCCCCCH-HHHHHHHHHHHHHHHhcCCeEEEEEecChhH
Q 001291 340 GPALALFMDEISTGLDS-STTFQIVNCFKQNIHINSGTAVISLLQPAPE 387 (1106)
Q Consensus 340 ~~p~vllLDEptsgLD~-~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~ 387 (1106)
.++++||+||+..-.+. .+...+...+..+. ..+..+|++.+.+..+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~-~~~~~iIitt~~~~~~ 240 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELH-DSGKQIVICSDREPQK 240 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHH-TTTCEEEEEESSCGGG
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHH-HCCCeEEEEECCCHHH
Confidence 37899999999887764 56667777777653 3455666655544444
No 380
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.65 E-value=0.00019 Score=80.38 Aligned_cols=39 Identities=21% Similarity=0.173 Sum_probs=32.6
Q ss_pred ceEEeeeeeeeeeCCe------EEEEEcCCCCCHHHHHHhhhCCC
Q 001291 868 KLVLLNGVSGAFRPGV------LTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 868 ~~~~L~~vs~~i~~Ge------~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
..+.|++++..|..++ ++||+||||||||||+++|.+..
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456777887777776 99999999999999999999853
No 381
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.63 E-value=0.00057 Score=72.91 Aligned_cols=38 Identities=24% Similarity=0.224 Sum_probs=27.7
Q ss_pred eeeceeEEEe---CceEEEEEcCCCCCHHHHHHHHhCCCCC
Q 001291 167 ILKDVSGIVK---PGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 167 iL~~vs~~i~---~G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
-|.++|+.+. +|.+++|.||+||||||+++.|+..+.+
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4677788777 8999999999999999999999998753
No 382
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.62 E-value=0.0048 Score=68.50 Aligned_cols=29 Identities=38% Similarity=0.651 Sum_probs=25.9
Q ss_pred EeCceEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 175 VKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
++++.-++|.||||+|||||.++|++.+.
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 46788899999999999999999999763
No 383
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.62 E-value=0.0047 Score=68.50 Aligned_cols=29 Identities=41% Similarity=0.487 Sum_probs=25.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCCCC
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPS 205 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1106)
|...++|.||||+|||||.++|++.+...
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 45688999999999999999999987553
No 384
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.61 E-value=0.0064 Score=69.56 Aligned_cols=28 Identities=32% Similarity=0.330 Sum_probs=24.7
Q ss_pred Cce--EEEEEcCCCCCHHHHHHHHhCCCCC
Q 001291 177 PGR--LTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 177 ~G~--~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
++. .++|.||+|+|||||++.+++.+.+
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345 8999999999999999999998765
No 385
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.61 E-value=0.00062 Score=68.69 Aligned_cols=26 Identities=35% Similarity=0.317 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 881 PGVLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 881 ~Ge~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
.|++++|+|+||||||||.++|++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999854
No 386
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.60 E-value=0.0009 Score=69.85 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=27.3
Q ss_pred eeeeeCCeEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 876 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 876 s~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
--.+++|.+++|+|++|||||||.+.|++..
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456789999999999999999999999864
No 387
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.56 E-value=0.00052 Score=69.93 Aligned_cols=39 Identities=36% Similarity=0.398 Sum_probs=30.8
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCcee--EEEECCcc
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSG--RVTYNGHN 218 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G--~V~~~G~~ 218 (1106)
++|++++|.|++||||||+++.|++.+.+ .| .|.++|..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~----~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh----CCCcEEEECChH
Confidence 47999999999999999999999998744 24 55556543
No 388
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.56 E-value=0.0018 Score=71.99 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=26.0
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
+.++++..+.|.||+|+|||||.++|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346788889999999999999999999743
No 389
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.52 E-value=0.0018 Score=76.00 Aligned_cols=41 Identities=27% Similarity=0.362 Sum_probs=31.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCC------C---CCceeEEEECCccC
Q 001291 179 RLTLLLGPPSSGKTTLLLALAGKLDP------S---LKVSGRVTYNGHNM 219 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~~------~---~~~~G~V~~~G~~~ 219 (1106)
-.++|+|+||+|||||++.|+|.... . -..+|.+.++|.++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 46899999999999999999998531 0 02368999999754
No 390
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.52 E-value=0.00089 Score=69.72 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=25.5
Q ss_pred eeCCeEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 879 FRPGVLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 879 i~~Ge~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
.++|++++|+|+||||||||++.|++..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999999853
No 391
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.51 E-value=0.0013 Score=68.61 Aligned_cols=30 Identities=37% Similarity=0.508 Sum_probs=24.4
Q ss_pred ceeEEEeCceEEEEEcCCCCCHHHHHHHHhC
Q 001291 170 DVSGIVKPGRLTLLLGPPSSGKTTLLLALAG 200 (1106)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G 200 (1106)
+.++.+.+| +++|+|||||||||++.+|.-
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 345556665 999999999999999998853
No 392
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.50 E-value=0.0012 Score=69.02 Aligned_cols=28 Identities=29% Similarity=0.698 Sum_probs=22.9
Q ss_pred eeeeeeCCeEEEEEcCCCCCHHHHHHhhh
Q 001291 875 VSGAFRPGVLTALMGVSGAGKTTLMDVLA 903 (1106)
Q Consensus 875 vs~~i~~Ge~~al~G~nGaGKSTLl~~l~ 903 (1106)
.++.+.+| +++|+|||||||||++++|.
T Consensus 17 ~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 34555554 89999999999999999884
No 393
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.49 E-value=0.0041 Score=72.21 Aligned_cols=35 Identities=29% Similarity=0.179 Sum_probs=29.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEE
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTY 214 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~ 214 (1106)
++.+++++||+||||||++..|++.+.+. .++|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEE
Confidence 68899999999999999999999987654 455544
No 394
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.48 E-value=0.00037 Score=84.12 Aligned_cols=47 Identities=28% Similarity=0.471 Sum_probs=38.7
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNG 216 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G 216 (1106)
.+++++++.+ +|+.++|+||||+|||||+++|++.+.+. .|.|.++|
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 3556666666 89999999999999999999999998765 67776655
No 395
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.47 E-value=0.0025 Score=64.25 Aligned_cols=27 Identities=41% Similarity=0.662 Sum_probs=23.5
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
++|..++|+|+||+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999999974
No 396
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.47 E-value=0.0025 Score=64.28 Aligned_cols=26 Identities=38% Similarity=0.698 Sum_probs=22.9
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
++|..++|+|++|+|||||++.|+|.
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999999985
No 397
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.39 E-value=0.012 Score=69.14 Aligned_cols=38 Identities=29% Similarity=0.557 Sum_probs=32.7
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
..-|+.+.+-+++|+++.|.|+||+|||||+.-++...
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45677777779999999999999999999998888754
No 398
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.39 E-value=0.00067 Score=71.18 Aligned_cols=41 Identities=29% Similarity=0.359 Sum_probs=34.1
Q ss_pred EeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCcee--EEEECCcc
Q 001291 175 VKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSG--RVTYNGHN 218 (1106)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G--~V~~~G~~ 218 (1106)
+++|.+++|.|++||||||+.+.|++.+.+. .| .+.++|..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d~ 64 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGDN 64 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECChH
Confidence 4578999999999999999999999988654 57 77777543
No 399
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.28 E-value=0.0024 Score=65.47 Aligned_cols=35 Identities=37% Similarity=0.445 Sum_probs=20.9
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
.+|+++|+..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999998888 5689999999999999999974
No 400
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.26 E-value=0.023 Score=64.44 Aligned_cols=30 Identities=43% Similarity=0.604 Sum_probs=26.3
Q ss_pred EEEeCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 173 GIVKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+=+++|+++.|.||||+|||||...++...
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999998887653
No 401
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.25 E-value=0.017 Score=61.54 Aligned_cols=42 Identities=5% Similarity=0.096 Sum_probs=29.2
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCceEEEEec
Q 001291 1012 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGRTVVCTIH 1053 (1106)
Q Consensus 1012 ~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~--~g~tvi~~tH 1053 (1106)
.+|+++|+..+.+.++......+..+++.+.. ...++|+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 46899999999888888766666555543321 1258888898
No 402
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.20 E-value=0.0021 Score=68.45 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=25.5
Q ss_pred Eeeeeeeeee---CCeEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 871 LLNGVSGAFR---PGVLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 871 ~L~~vs~~i~---~Ge~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
-|.++++.+. +|.+++|.|++||||||+++.|+...
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3566666666 89999999999999999999998743
No 403
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.19 E-value=0.0018 Score=66.27 Aligned_cols=32 Identities=28% Similarity=0.318 Sum_probs=26.2
Q ss_pred ceeEEEeCceEEEEEcCCCCCHHHHHHHHhCC
Q 001291 170 DVSGIVKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46777788999999999999999999999976
No 404
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.16 E-value=0.002 Score=67.15 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=26.0
Q ss_pred EeCceEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 175 VKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45789999999999999999999998763
No 405
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.15 E-value=0.0009 Score=75.86 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=33.2
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
.+++++++.+.+|.+++|+|++|||||||++.|++.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 477889999999999999999999999999999874
No 406
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.12 E-value=0.004 Score=63.84 Aligned_cols=49 Identities=24% Similarity=0.328 Sum_probs=27.1
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCC------CCceeEEEEEEcC
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK------TGGYITGDIRISG 919 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~------~~~~~~G~i~i~g 919 (1106)
.+++++++..++. .++|+|++|+|||||++.+.+.. +.+...+.+.++|
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~ 66 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGN 66 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETT
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECC
Confidence 4788999988877 67899999999999999998732 1223345566655
No 407
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.11 E-value=0.0012 Score=68.23 Aligned_cols=35 Identities=34% Similarity=0.478 Sum_probs=30.3
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
.+|+++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 47788888878875 689999999999999999874
No 408
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.08 E-value=0.0023 Score=67.55 Aligned_cols=34 Identities=32% Similarity=0.376 Sum_probs=27.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCC---CCCCCceeEEEE
Q 001291 178 GRLTLLLGPPSSGKTTLLLALAGKL---DPSLKVSGRVTY 214 (1106)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~---~~~~~~~G~V~~ 214 (1106)
+.+++|+|||||||||+.+.|++.+ .++ +|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d---~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLD---SGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEE---HHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc---Ccceee
Confidence 4689999999999999999999876 333 566654
No 409
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.08 E-value=0.008 Score=70.58 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=29.5
Q ss_pred EeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 871 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
-|+.+.+-+++|+++.|.|++|+|||||..-++.
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~ 222 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQ 222 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4566667799999999999999999999888875
No 410
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.08 E-value=0.00065 Score=77.61 Aligned_cols=77 Identities=14% Similarity=0.111 Sum_probs=35.8
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
+.+++++++.| +|+|++|+|||||++.|.|..... .|.+..++.............+..|.+.....+++.
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~---~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~ 100 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP---ERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVV 100 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------------------CEEEEEEEEC----CEEEEEEEE
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCC---CCcccCCCcccCCceeEEEEEEEeecCCcccceEEE
Confidence 45778888877 999999999999999998874432 444433333221110011234444443333345666
Q ss_pred HHHHHH
Q 001291 245 ETLAFA 250 (1106)
Q Consensus 245 E~l~f~ 250 (1106)
+|.-++
T Consensus 101 DTpG~g 106 (361)
T 2qag_A 101 DTPGYG 106 (361)
T ss_dssp C-----
T ss_pred Eecccc
Confidence 665543
No 411
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.08 E-value=0.0021 Score=65.27 Aligned_cols=40 Identities=28% Similarity=0.220 Sum_probs=30.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCcc
Q 001291 179 RLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN 218 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 218 (1106)
.+++|+|++|||||||++.|.+.+.+....-|.|..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5789999999999999999998765432224677766544
No 412
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.05 E-value=0.0014 Score=78.68 Aligned_cols=42 Identities=36% Similarity=0.487 Sum_probs=33.0
Q ss_pred eeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEE-EEE-EcCcc
Q 001291 878 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-DIR-ISGYP 921 (1106)
Q Consensus 878 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G-~i~-i~g~~ 921 (1106)
.+++|++++|+|+||||||||+++|+|...+ ..| .+. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~--~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME--MGGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT--TCSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc--cCCceEEEECCcH
Confidence 4779999999999999999999999996432 133 464 77754
No 413
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.03 E-value=0.0016 Score=66.65 Aligned_cols=30 Identities=40% Similarity=0.517 Sum_probs=26.7
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCCCCC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPS 205 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1106)
++|.+++|.|++||||||+.+.|++.+.+.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 478999999999999999999999987643
No 414
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.96 E-value=0.019 Score=61.06 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.8
Q ss_pred eeCCeEEEEEcCCCCCHHHHHHhhh
Q 001291 879 FRPGVLTALMGVSGAGKTTLMDVLA 903 (1106)
Q Consensus 879 i~~Ge~~al~G~nGaGKSTLl~~l~ 903 (1106)
+..|+.+.++|||||||||++..+.
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 4568999999999999999887765
No 415
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.94 E-value=0.093 Score=59.46 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=25.0
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
+-+++|+++.|.|++|+|||||...++.
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999999887774
No 416
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.93 E-value=0.0089 Score=70.06 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=28.8
Q ss_pred EeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 871 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
-|+.+..-+++|+++.|.|++|+|||||..-++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 4566666789999999999999999999877764
No 417
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.93 E-value=0.0019 Score=74.86 Aligned_cols=45 Identities=24% Similarity=0.101 Sum_probs=38.5
Q ss_pred eceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCcc
Q 001291 169 KDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN 218 (1106)
Q Consensus 169 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 218 (1106)
+++++. +|++++++|++||||||++..|++.+.+. .|+|.+.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D 135 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAAD 135 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeecc
Confidence 567777 89999999999999999999999998775 6778776644
No 418
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.90 E-value=0.042 Score=58.43 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=22.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
-++|+|++|+|||||++.|+|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 4789999999999999999997654
No 419
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.88 E-value=0.0032 Score=63.90 Aligned_cols=26 Identities=42% Similarity=0.460 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
++|++++|+|++||||||+.+.|++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999999874
No 420
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.86 E-value=0.0032 Score=72.19 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=25.7
Q ss_pred eEEEeCceEEEEEcCCCCCHHHHHHHHhCC
Q 001291 172 SGIVKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 172 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
-+.++.|..++|+|+||+|||||+++|+|.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 345667888999999999999999999997
No 421
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.85 E-value=0.0032 Score=66.44 Aligned_cols=56 Identities=21% Similarity=0.097 Sum_probs=36.7
Q ss_pred CeEEEEEcCCCCCHHHHHHhhhCCCC-CceeEEEEEE--------cCccCCh----hcccceEEEEccC
Q 001291 882 GVLTALMGVSGAGKTTLMDVLAGRKT-GGYITGDIRI--------SGYPKKQ----ETFARISGYCEQN 937 (1106)
Q Consensus 882 Ge~~al~G~nGaGKSTLl~~l~g~~~-~~~~~G~i~i--------~g~~~~~----~~~~~~~g~v~q~ 937 (1106)
+.+++|+|++||||||+.++|++... .-+..|++.. +|.+... ..+++.+|+++|+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 56899999999999999999987431 1133466655 5655431 1233456777664
No 422
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.82 E-value=0.0022 Score=72.49 Aligned_cols=33 Identities=33% Similarity=0.624 Sum_probs=31.5
Q ss_pred ceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 170 DVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
|+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999999865
No 423
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.74 E-value=0.0061 Score=71.49 Aligned_cols=39 Identities=21% Similarity=0.434 Sum_probs=30.0
Q ss_pred eEEEEEcCCCCCHHHHHHhhhCCCC------C----ceeEEEEEEcCcc
Q 001291 883 VLTALMGVSGAGKTTLMDVLAGRKT------G----GYITGDIRISGYP 921 (1106)
Q Consensus 883 e~~al~G~nGaGKSTLl~~l~g~~~------~----~~~~G~i~i~g~~ 921 (1106)
-.++|+|+||+|||||++.|+|... + .+..|.+.++|.+
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 4689999999999999999999532 1 1345788888864
No 424
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.73 E-value=0.0037 Score=65.04 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=24.8
Q ss_pred eeCCeEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 879 FRPGVLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 879 i~~Ge~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
..+|.+++|+||+|||||||.+.|+...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4589999999999999999999998643
No 425
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.72 E-value=0.0021 Score=69.46 Aligned_cols=40 Identities=25% Similarity=0.254 Sum_probs=31.8
Q ss_pred EEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCcc
Q 001291 174 IVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN 218 (1106)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 218 (1106)
..+++.+++|+|+|||||||+.+.|+..+. .|.+.++|-.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~~~~~~~~D~ 67 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-----GNIVIIDGDS 67 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-----TCCEEECGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-----CCcEEEecHH
Confidence 356788999999999999999999998764 2456666643
No 426
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.70 E-value=0.0046 Score=63.21 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=26.0
Q ss_pred eeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 874 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 874 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
++|+...+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56788888999999999999999999999864
No 427
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.69 E-value=0.00076 Score=75.87 Aligned_cols=37 Identities=24% Similarity=0.449 Sum_probs=31.1
Q ss_pred eeeceeEEEeCceE--EEEEcCCCCCHHHHHHHHhCCCC
Q 001291 167 ILKDVSGIVKPGRL--TLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 167 iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
++++++..+++|+. ++|+||+||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 56666666777777 99999999999999999999754
No 428
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.68 E-value=0.012 Score=64.49 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=23.5
Q ss_pred eeCCeEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 879 FRPGVLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 879 i~~Ge~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
+.++.-+.|.||+|+|||||.+.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3456678999999999999999998643
No 429
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.67 E-value=0.0014 Score=72.65 Aligned_cols=46 Identities=24% Similarity=0.135 Sum_probs=36.9
Q ss_pred ec-eeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCcc
Q 001291 169 KD-VSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN 218 (1106)
Q Consensus 169 ~~-vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 218 (1106)
++ +++..+ |++++++|++|+||||++..|++.+.+. .|+|.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEecC
Confidence 35 677666 9999999999999999999999988664 5667665533
No 430
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.67 E-value=0.0023 Score=77.12 Aligned_cols=48 Identities=23% Similarity=0.340 Sum_probs=38.0
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCc
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGY 920 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~ 920 (1106)
.+++++++.+ +|+.+.|+||||+|||||+++|++... ...|.+.++|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC-
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEeccc
Confidence 3567788888 899999999999999999999998543 23566766664
No 431
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.67 E-value=0.0027 Score=65.60 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=30.5
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
.+++++|+..+++ .++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4788888888887 4789999999999999999873
No 432
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.65 E-value=0.016 Score=61.20 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=40.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec---------CccHHHHHhcCeEEEEe
Q 001291 1013 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---------QPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 1013 ~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH---------~~~~~~~~~~D~v~~l~ 1070 (1106)
+|+++++||.-- |+.. +.+.++.+++.|.+||++-| ..+.++.+.+|+|..|+
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 489999999964 6643 44556666777999999999 45567888999998853
No 433
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.63 E-value=0.0057 Score=62.29 Aligned_cols=26 Identities=38% Similarity=0.641 Sum_probs=23.0
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
.+|.+++|.|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999864
No 434
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.63 E-value=0.00078 Score=71.98 Aligned_cols=67 Identities=13% Similarity=0.095 Sum_probs=40.8
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 325 SGGQKKRVTTGEMMVGPALALFMDEIST-GLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 325 SGGqkqRvsia~al~~~p~vllLDEpts-gLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
+.|.-.+.. ...+.+-+++++||.-. ++|.......++.+.... ....+++++.+.+.+.+.++|+.
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TTSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CCCeEEEEecCCCHHHHHHHcCC
Confidence 345544442 33578889999999976 687776655554443322 12245666667776666666654
No 435
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.62 E-value=0.045 Score=61.13 Aligned_cols=132 Identities=17% Similarity=0.140 Sum_probs=0.0
Q ss_pred eeCCeEEEEEcCCCCCHHHHHHhhh--------------CCCCCcee-EEEEEEcCccCChhcccceEEEEccCCCCCCC
Q 001291 879 FRPGVLTALMGVSGAGKTTLMDVLA--------------GRKTGGYI-TGDIRISGYPKKQETFARISGYCEQNDIHSPF 943 (1106)
Q Consensus 879 i~~Ge~~al~G~nGaGKSTLl~~l~--------------g~~~~~~~-~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~ 943 (1106)
+++|+++.|.|++|+|||||...++ |...+|.. ...++++... .
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~---------------------~ 153 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEG---------------------T 153 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSS---------------------C
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCC---------------------C
Q ss_pred CCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcC---CCeEEEe
Q 001291 944 VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVAN---PSIIFMD 1020 (1106)
Q Consensus 944 ~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~---p~illLD 1020 (1106)
.....-......+..+ .+++++.+-+....+ +..+.+.+..++.++.+ ++++++|
T Consensus 154 ~~~~~l~~~~~~~g~~-----------~~~~~~~l~~~~~~~-----------~~~~~~~l~~l~~~~~~~~~~~lvVID 211 (322)
T 2i1q_A 154 FRPERIMQMAEHAGID-----------GQTVLDNTFVARAYN-----------SDMQMLFAEKIEDLIQEGNNIKLVVID 211 (322)
T ss_dssp CCHHHHHHHHHHHTCC-----------HHHHHHTEEEEECSS-----------HHHHHHHHHTHHHHHHTTCEEEEEEEE
T ss_pred CCHHHHHHHHHHcCCC-----------HHHHhcCEEEEeCCC-----------HHHHHHHHHHHHHHHhhccCccEEEEE
Q ss_pred CCCCCCCH------------HHHHHHHHHHHHHHhC-CceEEEEec
Q 001291 1021 EPTSGLDA------------RAAAIVMRTVRNTVDT-GRTVVCTIH 1053 (1106)
Q Consensus 1021 EPTsgLD~------------~~~~~i~~~l~~~~~~-g~tvi~~tH 1053 (1106)
.-++-... ..-..+.+.|++++++ |++||++.|
T Consensus 212 sl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq 257 (322)
T 2i1q_A 212 SLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQ 257 (322)
T ss_dssp CSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECc
No 436
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.60 E-value=0.0045 Score=64.20 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 001291 180 LTLLLGPPSSGKTTLLLALAG 200 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G 200 (1106)
.++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 437
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.55 E-value=0.0045 Score=68.73 Aligned_cols=24 Identities=38% Similarity=0.616 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCC
Q 001291 178 GRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
+..++|+|+||+|||||++.|.|.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 347999999999999999999996
No 438
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.51 E-value=0.005 Score=69.92 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
+++.+++|+|++|||||||++.|+|.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 36889999999999999999999973
No 439
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.48 E-value=0.007 Score=61.40 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999985
No 440
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.47 E-value=0.013 Score=61.79 Aligned_cols=53 Identities=23% Similarity=0.266 Sum_probs=37.7
Q ss_pred CCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEe---------cChhHHHhhcCeEEEec
Q 001291 341 PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLL---------QPAPETYNLFDDIILLS 399 (1106)
Q Consensus 341 ~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~---------q~~~~~~~~~D~vilL~ 399 (1106)
+++++++||.-. |+.. +++.++.++. .+.++|++=+ .+++++..++|.|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 579999999964 6643 4445555554 3556666555 56789999999999985
No 441
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.46 E-value=0.025 Score=63.25 Aligned_cols=102 Identities=12% Similarity=0.138 Sum_probs=0.0
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhCCC---CCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhh
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWL 956 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g~~---~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~ 956 (1106)
+.+..+.|.||+|+|||||++.|++.. ......-+
T Consensus 35 ~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~------------------------------------------ 72 (324)
T 1l8q_A 35 SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS------------------------------------------ 72 (324)
T ss_dssp TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE------------------------------------------
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE------------------------------------------
Q ss_pred cCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH--HHHHHH
Q 001291 957 RLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIV 1034 (1106)
Q Consensus 957 ~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~--~~~~~i 1034 (1106)
.........+.+..-.+..+... ..+|.+||+||+-. +.. .++..+
T Consensus 73 -------~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~vL~iDEi~~-l~~~~~~~~~l 120 (324)
T 1l8q_A 73 -------ADDFAQAMVEHLKKGTINEFRNM------------------------YKSVDLLLLDDVQF-LSGKERTQIEF 120 (324)
T ss_dssp -------HHHHHHHHHHHHHHTCHHHHHHH------------------------HHTCSEEEEECGGG-GTTCHHHHHHH
T ss_pred -------HHHHHHHHHHHHHcCcHHHHHHH------------------------hcCCCEEEEcCccc-ccCChHHHHHH
Q ss_pred HHHHHHHHhCCceEEEEecCc
Q 001291 1035 MRTVRNTVDTGRTVVCTIHQP 1055 (1106)
Q Consensus 1035 ~~~l~~~~~~g~tvi~~tH~~ 1055 (1106)
...+..+.+.|..+|++++.+
T Consensus 121 ~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 121 FHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHTTCEEEEEESSC
T ss_pred HHHHHHHHHCCCeEEEEecCC
No 442
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.45 E-value=0.05 Score=61.80 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=22.2
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
.+..-+.|.||.|+|||||.+.|+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34567889999999999999999864
No 443
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.45 E-value=0.013 Score=59.30 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHhhhCC
Q 001291 883 VLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 883 e~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
-.++|+|++|+|||||++.|+|.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999984
No 444
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.45 E-value=0.0051 Score=63.80 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 445
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.40 E-value=0.034 Score=59.68 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVN 963 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 963 (1106)
.++|+|.+|+|||||++.|.|... .+.+.+....+.....+.+..+..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~--------~~~~~~~~~~T~~~~~~~~~~~~~------------------------ 70 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR--------FFSRLGATSVTRACTTGSRRWDKC------------------------ 70 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC--------C---------CCSCEEEEEEETTE------------------------
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC--------ccccCCCCCccccEEEEEEEECCc------------------------
Q ss_pred hHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH--HHHHHHHHHHHh---cCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 001291 964 SETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE--QRKRLTIAVELV---ANPSIIFMDEPTSGLDARAAAIVMRTV 1038 (1106)
Q Consensus 964 ~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~G--qrqrl~iA~aL~---~~p~illLDEPTsgLD~~~~~~i~~~l 1038 (1106)
.-..+..||....+.. ++.+-.+.+++. .+++++|+--+.+. .......+++.+
T Consensus 71 --------------------~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l 129 (247)
T 3lxw_A 71 --------------------HVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQV 129 (247)
T ss_dssp --------------------EEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHH
T ss_pred --------------------EEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHH
Q ss_pred HHHHhC---CceEEEEec
Q 001291 1039 RNTVDT---GRTVVCTIH 1053 (1106)
Q Consensus 1039 ~~~~~~---g~tvi~~tH 1053 (1106)
++.... +.++|+++|
T Consensus 130 ~~~~~~~~~~~~iilv~n 147 (247)
T 3lxw_A 130 RDMFGEDVLKWMVIVFTR 147 (247)
T ss_dssp HHHHCGGGGGGEEEEEEC
T ss_pred HHHhChhhhccEEEEEEc
No 446
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.37 E-value=0.0073 Score=60.20 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 883 VLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 883 e~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
-.++|+|++|+|||||++.++|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999853
No 447
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.36 E-value=0.0082 Score=59.80 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
.++|+|+||+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 448
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.36 E-value=0.008 Score=60.69 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
|.++.|.|+|||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998764
No 449
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.30 E-value=0.0057 Score=63.38 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 178 GRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
..+++|.|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999865
No 450
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.29 E-value=0.0079 Score=60.18 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998765
No 451
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.22 E-value=0.079 Score=60.14 Aligned_cols=26 Identities=38% Similarity=0.644 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+..-++|.||+|+|||||.++|+...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45578999999999999999999865
No 452
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.20 E-value=0.024 Score=64.58 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=22.4
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
..+..+.|.||+|+|||||++.++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 35667899999999999999999863
No 453
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.15 E-value=0.0087 Score=61.16 Aligned_cols=27 Identities=44% Similarity=0.587 Sum_probs=23.7
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 357899999999999999999998654
No 454
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.14 E-value=0.0061 Score=65.79 Aligned_cols=35 Identities=37% Similarity=0.719 Sum_probs=25.1
Q ss_pred eeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
.++++++..++| ++|.||||+|||||+++|++.+.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 345555555555 88999999999999999999764
No 455
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.13 E-value=0.0025 Score=71.71 Aligned_cols=34 Identities=24% Similarity=0.400 Sum_probs=31.5
Q ss_pred EeeeeeeeeeCCeE--EEEEcCCCCCHHHHHHhhhC
Q 001291 871 LLNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 871 ~L~~vs~~i~~Ge~--~al~G~nGaGKSTLl~~l~g 904 (1106)
+++.+++.+++|++ ++|+|++||||||+.++|++
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 67888889999988 99999999999999999987
No 456
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.07 E-value=0.01 Score=60.37 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
|.+++|.|++||||||+.+.|+-.+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999987653
No 457
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.06 E-value=0.01 Score=60.54 Aligned_cols=29 Identities=34% Similarity=0.543 Sum_probs=25.4
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
....+|.+++|+|++||||||+.+.|++.
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34457999999999999999999999874
No 458
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.04 E-value=0.01 Score=68.07 Aligned_cols=30 Identities=27% Similarity=0.576 Sum_probs=26.2
Q ss_pred eeeeeCCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 876 SGAFRPGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 876 s~~i~~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
-..+..|..++|+|++|+|||||++.|+|.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 345678899999999999999999999985
No 459
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.02 E-value=0.0023 Score=72.37 Aligned_cols=40 Identities=35% Similarity=0.630 Sum_probs=34.5
Q ss_pred ceeeeceeEEEeCceE--EEEEcCCCCCHHHHHHHHhCCCCC
Q 001291 165 LTILKDVSGIVKPGRL--TLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
..+++.++..++.|++ +++.||||+||||+++++++.+.+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3467777778888888 999999999999999999998754
No 460
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.01 E-value=0.0094 Score=60.47 Aligned_cols=37 Identities=35% Similarity=0.366 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCCHHHHHHhhhCCCC-CceeEEEEEEcC
Q 001291 883 VLTALMGVSGAGKTTLMDVLAGRKT-GGYITGDIRISG 919 (1106)
Q Consensus 883 e~~al~G~nGaGKSTLl~~l~g~~~-~~~~~G~i~i~g 919 (1106)
.+++|+|++|||||||++.|.+... .+...|.|..++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 5789999999999999999987421 122346666654
No 461
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.99 E-value=0.011 Score=62.81 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 179 RLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
-+++|.||+||||||+.+.|+..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999654
No 462
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.87 E-value=0.012 Score=59.68 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999964
No 463
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.84 E-value=0.01 Score=62.04 Aligned_cols=30 Identities=30% Similarity=0.283 Sum_probs=26.2
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
..+++|.+++|+|++||||||+.+.|++..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999999998753
No 464
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.80 E-value=0.013 Score=59.45 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHhhhCC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999984
No 465
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.79 E-value=0.014 Score=59.37 Aligned_cols=26 Identities=27% Similarity=0.155 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
++..+.|+||+||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36688999999999999999998754
No 466
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.77 E-value=0.013 Score=60.37 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999876
No 467
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.77 E-value=0.016 Score=60.11 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=24.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCCC
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5778999999999999999999987653
No 468
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.76 E-value=0.014 Score=58.24 Aligned_cols=19 Identities=37% Similarity=0.593 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 001291 180 LTLLLGPPSSGKTTLLLAL 198 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L 198 (1106)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999999999
No 469
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.74 E-value=0.012 Score=62.59 Aligned_cols=28 Identities=29% Similarity=0.301 Sum_probs=24.5
Q ss_pred EeCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 175 VKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
-.+|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578899999999999999999999854
No 470
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.73 E-value=0.013 Score=63.26 Aligned_cols=24 Identities=38% Similarity=0.632 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 179 RLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
.+++|+||||||||||.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999999865
No 471
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.73 E-value=0.016 Score=58.41 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 001291 179 RLTLLLGPPSSGKTTLLLALAG 200 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G 200 (1106)
.+++|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 472
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.72 E-value=0.014 Score=59.43 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999999984
No 473
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.67 E-value=0.013 Score=60.73 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 882 GVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 882 Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
..+++|+|++||||||+.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
No 474
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.66 E-value=0.0029 Score=72.26 Aligned_cols=30 Identities=30% Similarity=0.417 Sum_probs=26.1
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
.+++++++.| +|+|++|+|||||++.|.|.
T Consensus 31 ~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 31 SVKKGFEFTL------MVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp HHHHCCEECE------EECCCTTSCHHHHHHHHTTC
T ss_pred eecCCCCEEE------EEEcCCCCCHHHHHHHHhCC
Confidence 4677888876 99999999999999999874
No 475
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.65 E-value=0.013 Score=60.06 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
.+.|+||||||||||++.|....+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 478999999999999999987653
No 476
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.62 E-value=0.016 Score=63.89 Aligned_cols=35 Identities=29% Similarity=0.340 Sum_probs=27.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECC
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNG 216 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G 216 (1106)
.|.++.|.|||||||||+.+.|+..++ .|.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEec
Confidence 467999999999999999999987653 24455554
No 477
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.56 E-value=0.015 Score=58.99 Aligned_cols=26 Identities=46% Similarity=0.378 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
.+..++|.|++||||||+.+.|+-.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 46678999999999999999998543
No 478
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.51 E-value=0.19 Score=59.85 Aligned_cols=33 Identities=21% Similarity=0.128 Sum_probs=27.4
Q ss_pred eeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 872 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
|+.+..-+++|+++.|.|++|+|||||..-++-
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 455555689999999999999999999877663
No 479
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.47 E-value=0.016 Score=59.23 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=23.5
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998654
No 480
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.44 E-value=0.061 Score=62.92 Aligned_cols=38 Identities=29% Similarity=0.292 Sum_probs=32.2
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCC
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
..+-|+.+.+-+++|+++.|.|+||+|||||+.-++..
T Consensus 183 G~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 183 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp SCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 34567777777999999999999999999998877754
No 481
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.43 E-value=0.018 Score=59.77 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=23.9
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
++|.+++|.|++||||||+.+.|+-.+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998754
No 482
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.40 E-value=0.011 Score=74.51 Aligned_cols=32 Identities=44% Similarity=0.550 Sum_probs=28.7
Q ss_pred EEEeCceEEEEEcCCCCCHHHHHHHHhCCCCC
Q 001291 173 GIVKPGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
+.+++|+-++|.||||||||||+++|+|.+..
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 35789999999999999999999999998754
No 483
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.36 E-value=0.02 Score=58.96 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 57899999999999999999865
No 484
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.34 E-value=0.25 Score=55.09 Aligned_cols=120 Identities=23% Similarity=0.266 Sum_probs=0.0
Q ss_pred eeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcC
Q 001291 879 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRL 958 (1106)
Q Consensus 879 i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~ 958 (1106)
..+..-+.|.||.|+|||||.+.++....+ ..-+.+++.
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~~~---~~~~~i~~~-------------------------------------- 80 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSS-------------------------------------- 80 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHTTS---CEEEEEECC--------------------------------------
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHcCC---CcEEEEEhH--------------------------------------
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC-------CCCCCHHHH
Q 001291 959 PPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP-------TSGLDARAA 1031 (1106)
Q Consensus 959 ~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEP-------TsgLD~~~~ 1031 (1106)
++.....+ ...+.-+-.+..+-..+|.|||+||. ..+......
T Consensus 81 -----------------------~l~~~~~g-------~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~ 130 (322)
T 1xwi_A 81 -----------------------DLVSKWLG-------ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAAR 130 (322)
T ss_dssp -----------------------SSCCSSCC-------SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHH
T ss_pred -----------------------HHHhhhhh-------HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHH
Q ss_pred HHHHHHHHHH-----HhCCceEEEEecCc---cHHHHHhcCeEEEE
Q 001291 1032 AIVMRTVRNT-----VDTGRTVVCTIHQP---SIDIFEAFDELFLM 1069 (1106)
Q Consensus 1032 ~~i~~~l~~~-----~~~g~tvi~~tH~~---~~~~~~~~D~v~~l 1069 (1106)
..+.+++..+ ...+..||.+|..+ +..+...||+.+.+
T Consensus 131 ~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i 176 (322)
T 1xwi_A 131 RIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYI 176 (322)
T ss_dssp HHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEEC
T ss_pred HHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEe
No 485
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.32 E-value=0.019 Score=57.80 Aligned_cols=23 Identities=43% Similarity=0.473 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
.++|+|||||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999764
No 486
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.30 E-value=0.021 Score=59.89 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=23.2
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
++|..++|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998754
No 487
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.29 E-value=0.023 Score=59.52 Aligned_cols=24 Identities=33% Similarity=0.314 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhC
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAG 200 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G 200 (1106)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 488
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.29 E-value=0.023 Score=57.89 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 178 GRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+.+++|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998643
No 489
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.26 E-value=0.021 Score=60.77 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
.+|.+++|+|++||||||+.+.|++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999999986
No 490
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.23 E-value=0.021 Score=59.45 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=24.2
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
++|.+++|.|++||||||+.+.|+-.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998754
No 491
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.22 E-value=0.022 Score=57.33 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 882 GVLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 882 Ge~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
|.++.|+|++||||||+.+.|+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998643
No 492
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.22 E-value=0.0076 Score=61.96 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=23.5
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998754
No 493
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.21 E-value=0.013 Score=64.78 Aligned_cols=46 Identities=26% Similarity=0.155 Sum_probs=33.6
Q ss_pred ee-eeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 873 NG-VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 873 ~~-vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
++ +++..+ |++++++|+||+||||++..|++.... ..+.+.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~--~g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKK--KGFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEecC
Confidence 45 778776 999999999999999999999974321 12345554444
No 494
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.18 E-value=0.52 Score=53.48 Aligned_cols=120 Identities=15% Similarity=0.187 Sum_probs=0.0
Q ss_pred eeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcC
Q 001291 879 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRL 958 (1106)
Q Consensus 879 i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~ 958 (1106)
+++|+++.|.|+.|+|||||...++ .........+.|+.-+....
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la------------------~~~~~~g~~vlyi~~E~s~~----------------- 115 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIV------------------AQAQKAGGTCAFIDAEHALD----------------- 115 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH------------------HHHHHTTCCEEEEESSCCCC-----------------
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHH------------------HHHHHCCCeEEEEECCCChh-----------------
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh--cCCCeEEEeCCCCCC----------
Q 001291 959 PPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGL---------- 1026 (1106)
Q Consensus 959 ~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~--~~p~illLDEPTsgL---------- 1026 (1106)
....+.+++..-.-..... -+. .+.+.+++.++ .++++|++|..++=.
T Consensus 116 -------------~~~a~~~g~d~~~l~i~~~-----~~~--e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~g 175 (366)
T 1xp8_A 116 -------------PVYARALGVNTDELLVSQP-----DNG--EQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMG 175 (366)
T ss_dssp -------------HHHHHHTTCCGGGCEEECC-----SSH--HHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC-----
T ss_pred -------------HHHHHHcCCCHHHceeecC-----CcH--HHHHHHHHHHHhcCCCCEEEEeChHHhccccccccccc
Q ss_pred CH---HHHHHHHHHHHHH----HhCCceEEEEec
Q 001291 1027 DA---RAAAIVMRTVRNT----VDTGRTVVCTIH 1053 (1106)
Q Consensus 1027 D~---~~~~~i~~~l~~~----~~~g~tvi~~tH 1053 (1106)
|. ...+.+.+.++++ .+.+++||++.|
T Consensus 176 d~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 176 DSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
No 495
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.18 E-value=0.021 Score=56.98 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHhhhCC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
+++|+|++||||||+.+.|+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999854
No 496
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.17 E-value=0.016 Score=58.41 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCC
Q 001291 179 RLTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
.+++|+|++|||||||+..|+..+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999999987654
No 497
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.16 E-value=0.0047 Score=69.75 Aligned_cols=37 Identities=27% Similarity=0.333 Sum_probs=32.9
Q ss_pred eEEeeeeeeeeeCCeE--EEEEcCCCCCHHHHHHhhhCC
Q 001291 869 LVLLNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 869 ~~~L~~vs~~i~~Ge~--~al~G~nGaGKSTLl~~l~g~ 905 (1106)
..+++.++..++.|++ +.+.||+|+||||+++++++.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3477888888999988 999999999999999999974
No 498
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.16 E-value=0.023 Score=57.80 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
+++|.|++||||||+.+.|+-.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988654
No 499
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.11 E-value=0.052 Score=72.57 Aligned_cols=148 Identities=14% Similarity=0.090 Sum_probs=0.0
Q ss_pred EeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEE-CCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHHHHHh
Q 001291 175 VKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTY-NGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARC 253 (1106)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~-~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 253 (1106)
+++|+++.|.||||+|||||+..++...... .|.|.| ++.........+..++-.++-......++.+-+....++
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~---g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~l 805 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDAL 805 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHc---CCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHH
Q ss_pred cCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhhhhHHH
Q 001291 254 QGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVT 333 (1106)
Q Consensus 254 ~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvs 333 (1106)
T Consensus 806 -------------------------------------------------------------------------------- 805 (1706)
T 3cmw_A 806 -------------------------------------------------------------------------------- 805 (1706)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Q ss_pred HHHHHhcCCccceeecCCCCCC----------------HHHHHHHHHHHHHHHHhcCCeEEEEEecChh-----------
Q 001291 334 TGEMMVGPALALFMDEISTGLD----------------SSTTFQIVNCFKQNIHINSGTAVISLLQPAP----------- 386 (1106)
Q Consensus 334 ia~al~~~p~vllLDEptsgLD----------------~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~----------- 386 (1106)
.--..|+++++|+..+-.. .....+++..|+.+++..+.++|++.+-...
T Consensus 806 ---v~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~Gdp~~p 882 (1706)
T 3cmw_A 806 ---ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETT 882 (1706)
T ss_dssp ---HHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEE
T ss_pred ---HHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCccccccCCcccc
Q ss_pred ----HHHhhcCeEEEecCCeEEEEcC
Q 001291 387 ----ETYNLFDDIILLSDGQIVYQGP 408 (1106)
Q Consensus 387 ----~~~~~~D~vilL~~G~iv~~G~ 408 (1106)
.+...+|-++.|..++....|.
T Consensus 883 ~gs~~Leq~ADvvl~L~R~~~~~~g~ 908 (1706)
T 3cmw_A 883 TGGNALKFYASVRLDIRRIGAVKEGE 908 (1706)
T ss_dssp SSCSHHHHHEEEEEEEEEEEEEEETT
T ss_pred CCcchhhheeeEEEEEEecccccccc
No 500
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.04 E-value=0.022 Score=58.38 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHhhhCC
Q 001291 885 TALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 885 ~al~G~nGaGKSTLl~~l~g~ 905 (1106)
+.|+||||||||||++.|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999998753
Done!