BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001292
(1106 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IW1|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
In Lipopolysaccharide Biosynthesis
Length = 374
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 24/222 (10%)
Query: 380 PGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGP 439
PG D E S E Y R++NG + + +++ VGS F D ++ +
Sbjct: 167 PGIYPDRKYSEQIPNSREIY--RQKNGIKEQQNLLLQVGSDF--GRKGVDRSI---EALA 219
Query: 440 LLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL 499
L + R N++ +F+ G +AL A +LG+ +V + DV+ ++
Sbjct: 220 SLPESLRHNTL------LFVVGQDKPRKFEAL---AEKLGV-RSNVHFFSGRNDVSELMA 269
Query: 500 MADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEG--AQVI---FFQKDN 554
AD++L+ + Q G +++ A+T G+PV+T Y+A+ VI F Q+
Sbjct: 270 AADLLLHPAYQEAAGI--VLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQL 327
Query: 555 PEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVT 596
E L +A + ++ AR A L++ A D +T
Sbjct: 328 NEVLRKALTQSPLRMAWAENARHYADTQDLYSLPEKAADIIT 369
>pdb|3OPY|A Chain A, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|C Chain C, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|E Chain E, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|G Chain G, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 989
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 21/118 (17%)
Query: 460 CGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLI 519
C N+ GY DA+++ AS + R F +V G G S + LI
Sbjct: 744 CLNTLSGYCDAVKQSAS-------ASRRRTFVVEVQG----------GYSGYLASYAGLI 786
Query: 520 VRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFART 577
A+ V TP+ PI + V E +++ + +G +R+ +FI N K SK T
Sbjct: 787 TGALA----VYTPENPINLQTVQEDIELLTRTYEEDDGKNRSGKIFIHNEKASKVYTT 840
>pdb|3MGF|A Chain A, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 7.5
pdb|3MGF|B Chain B, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 7.5
pdb|3MGF|C Chain C, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 7.5
pdb|3MGF|D Chain D, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 7.5
Length = 218
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 16/79 (20%)
Query: 549 FFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILENVLNF 608
+F++ PEGLS SL +G G ++L T Y + +NF
Sbjct: 81 YFKQAFPEGLSWERSLEFEDG------------GSASVSAHISLRGNTFYHKSKFTGVNF 128
Query: 609 PSDALLPGPISQLQQVSWE 627
P+D GPI Q Q V WE
Sbjct: 129 PAD----GPIMQNQSVDWE 143
>pdb|2ZMU|A Chain A, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 9.1
pdb|2ZMW|A Chain A, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 6.0
pdb|2ZMW|B Chain B, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 6.0
pdb|2ZMW|C Chain C, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 6.0
pdb|2ZMW|D Chain D, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 6.0
Length = 223
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 16/79 (20%)
Query: 549 FFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILENVLNF 608
+F++ PEGLS SL +G G ++L T Y + +NF
Sbjct: 78 YFKQAFPEGLSWERSLEFEDG------------GSASVSAHISLRGNTFYHKSKFTGVNF 125
Query: 609 PSDALLPGPISQLQQVSWE 627
P+D GPI Q Q V WE
Sbjct: 126 PAD----GPIMQNQSVDWE 140
>pdb|2P9J|A Chain A, Crystal Structure Of Aq2171 From Aquifex Aeolicus
pdb|2P9J|B Chain B, Crystal Structure Of Aq2171 From Aquifex Aeolicus
pdb|2P9J|C Chain C, Crystal Structure Of Aq2171 From Aquifex Aeolicus
pdb|2P9J|D Chain D, Crystal Structure Of Aq2171 From Aquifex Aeolicus
pdb|2P9J|E Chain E, Crystal Structure Of Aq2171 From Aquifex Aeolicus
pdb|2P9J|F Chain F, Crystal Structure Of Aq2171 From Aquifex Aeolicus
pdb|2P9J|G Chain G, Crystal Structure Of Aq2171 From Aquifex Aeolicus
pdb|2P9J|H Chain H, Crystal Structure Of Aq2171 From Aquifex Aeolicus
Length = 162
Score = 30.0 bits (66), Expect = 7.0, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 389 VEAYSKSHEKYQLRKEN-GFLKDEIVVVVVGSSFFYNELSWDYAV--AMHDVGPLLIKYA 445
+E Y K EKY L+ E GF+ D++V + V ++ + AV A+ +V + +
Sbjct: 86 LEIYEKIKEKYSLKDEEIGFIGDDVVDIEV-----XKKVGFPVAVRNAVEEVRKVAVYIT 140
Query: 446 RRNSVEGSFKFV 457
+RN EG+ + V
Sbjct: 141 QRNGGEGALREV 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,822,912
Number of Sequences: 62578
Number of extensions: 1222114
Number of successful extensions: 2193
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2191
Number of HSP's gapped (non-prelim): 6
length of query: 1106
length of database: 14,973,337
effective HSP length: 109
effective length of query: 997
effective length of database: 8,152,335
effective search space: 8127877995
effective search space used: 8127877995
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)