Query 001292
Match_columns 1106
No_of_seqs 312 out of 2311
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 20:57:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001292.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001292hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1519 KdtA 3-deoxy-D-manno-o 100.0 3.8E-35 8.2E-40 332.5 25.8 383 151-603 3-416 (419)
2 TIGR03088 stp2 sugar transfera 100.0 2.8E-33 6.1E-38 316.3 36.9 349 222-606 1-374 (374)
3 PLN02871 UDP-sulfoquinovose:DA 100.0 1.2E-31 2.5E-36 315.1 37.0 346 220-608 56-438 (465)
4 PRK05749 3-deoxy-D-manno-octul 100.0 7.8E-32 1.7E-36 312.3 34.9 384 150-606 3-421 (425)
5 cd04962 GT1_like_5 This family 100.0 1.5E-31 3.4E-36 299.1 35.7 344 223-605 1-371 (371)
6 TIGR03449 mycothiol_MshA UDP-N 100.0 1.3E-31 2.7E-36 306.4 35.1 339 234-607 19-404 (405)
7 PRK15427 colanic acid biosynth 100.0 3.7E-31 8.1E-36 306.6 32.8 337 223-604 1-405 (406)
8 cd03796 GT1_PIG-A_like This fa 100.0 1.4E-30 3E-35 299.1 36.3 335 224-608 1-371 (398)
9 cd03807 GT1_WbnK_like This fam 100.0 2.7E-30 5.8E-35 281.1 35.6 339 224-603 1-365 (365)
10 TIGR02472 sucr_P_syn_N sucrose 100.0 1.8E-30 3.9E-35 303.2 36.3 341 232-603 23-439 (439)
11 PRK00654 glgA glycogen synthas 100.0 1.8E-30 3.9E-35 305.7 36.6 352 223-607 1-465 (466)
12 TIGR02149 glgA_Coryne glycogen 100.0 3.7E-30 8E-35 291.1 36.7 346 223-606 1-388 (388)
13 cd04951 GT1_WbdM_like This fam 100.0 4.9E-30 1.1E-34 283.8 36.5 335 224-603 1-359 (360)
14 PRK15179 Vi polysaccharide bio 100.0 4.2E-30 9.1E-35 313.8 39.0 346 219-603 277-692 (694)
15 TIGR02468 sucrsPsyn_pln sucros 100.0 3.9E-30 8.5E-35 319.9 38.3 354 220-608 167-674 (1050)
16 cd03819 GT1_WavL_like This fam 100.0 5.1E-30 1.1E-34 284.2 34.9 322 227-594 2-354 (355)
17 PRK10307 putative glycosyl tra 100.0 1.3E-29 2.9E-34 291.7 39.2 347 223-607 1-410 (412)
18 PRK14099 glycogen synthase; Pr 100.0 6.4E-30 1.4E-34 303.0 35.8 353 221-608 2-482 (485)
19 cd03812 GT1_CapH_like This fam 100.0 9.7E-30 2.1E-34 282.3 34.8 327 224-589 1-349 (358)
20 PLN02316 synthase/transferase 100.0 2E-29 4.3E-34 314.4 39.7 346 220-607 585-1036(1036)
21 TIGR02095 glgA glycogen/starch 100.0 1.5E-29 3.4E-34 297.6 36.4 348 223-605 1-473 (473)
22 cd03792 GT1_Trehalose_phosphor 100.0 3E-29 6.6E-34 284.7 37.1 336 224-604 1-371 (372)
23 cd03821 GT1_Bme6_like This fam 100.0 4E-29 8.7E-34 272.9 36.1 343 224-599 1-374 (375)
24 PLN02939 transferase, transfer 100.0 4.8E-29 1E-33 306.4 39.0 370 209-608 467-970 (977)
25 cd03805 GT1_ALG2_like This fam 100.0 5.2E-29 1.1E-33 282.1 36.6 339 223-596 1-389 (392)
26 PRK15490 Vi polysaccharide bio 100.0 2E-29 4.3E-34 297.6 33.8 338 224-604 163-575 (578)
27 PRK09922 UDP-D-galactose:(gluc 100.0 6.5E-29 1.4E-33 281.6 33.1 326 223-605 1-356 (359)
28 PRK15484 lipopolysaccharide 1, 100.0 2.3E-28 4.9E-33 280.6 36.7 316 233-606 19-379 (380)
29 cd03814 GT1_like_2 This family 100.0 1.8E-28 4E-33 269.0 33.1 337 224-603 1-364 (364)
30 cd03820 GT1_amsD_like This fam 100.0 3.5E-28 7.7E-33 262.1 34.3 322 224-599 1-347 (348)
31 cd03791 GT1_Glycogen_synthase_ 100.0 1.5E-28 3.4E-33 288.0 34.0 351 224-603 1-475 (476)
32 cd03800 GT1_Sucrose_synthase T 100.0 2.3E-28 5E-33 275.2 34.1 335 233-599 19-397 (398)
33 cd03811 GT1_WabH_like This fam 100.0 4E-28 8.6E-33 261.6 33.6 324 224-591 1-352 (353)
34 PRK14098 glycogen synthase; Pr 100.0 3.5E-28 7.6E-33 288.5 36.1 354 223-607 6-488 (489)
35 cd03818 GT1_ExpC_like This fam 100.0 2.6E-28 5.5E-33 280.0 33.5 338 224-599 1-395 (396)
36 cd05844 GT1_like_7 Glycosyltra 100.0 1.9E-28 4E-33 273.9 31.5 332 224-600 1-366 (367)
37 cd03822 GT1_ecORF704_like This 100.0 6.8E-28 1.5E-32 265.3 35.1 339 224-603 1-366 (366)
38 cd03817 GT1_UGDG_like This fam 100.0 1.3E-27 2.9E-32 261.5 35.9 341 224-604 1-373 (374)
39 cd03799 GT1_amsK_like This is 100.0 1.2E-27 2.5E-32 264.5 35.3 319 224-595 1-351 (355)
40 cd03825 GT1_wcfI_like This fam 100.0 8E-28 1.7E-32 266.7 34.1 336 223-605 1-365 (365)
41 TIGR02470 sucr_synth sucrose s 100.0 1E-27 2.3E-32 293.4 37.8 350 221-602 254-745 (784)
42 cd03795 GT1_like_4 This family 100.0 1.3E-27 2.7E-32 264.4 34.9 328 224-595 1-356 (357)
43 cd03801 GT1_YqgM_like This fam 100.0 2.2E-27 4.8E-32 255.9 35.8 343 224-603 1-374 (374)
44 cd03808 GT1_cap1E_like This fa 100.0 2.2E-27 4.8E-32 257.0 35.6 330 224-599 1-358 (359)
45 PRK10125 putative glycosyl tra 100.0 1.1E-27 2.4E-32 278.0 32.3 337 223-605 1-405 (405)
46 cd03798 GT1_wlbH_like This fam 100.0 9E-27 2E-31 252.8 36.8 336 225-604 1-376 (377)
47 cd03802 GT1_AviGT4_like This f 100.0 4.9E-27 1.1E-31 258.3 33.3 305 223-603 1-335 (335)
48 cd03813 GT1_like_3 This family 100.0 8.7E-28 1.9E-32 283.6 28.6 282 282-603 172-475 (475)
49 cd04955 GT1_like_6 This family 100.0 1.1E-26 2.3E-31 258.1 35.2 331 224-603 1-363 (363)
50 cd03809 GT1_mtfB_like This fam 100.0 2.3E-27 5.1E-32 260.9 29.1 334 224-599 1-364 (365)
51 cd03823 GT1_ExpE7_like This fa 100.0 1.4E-26 3.1E-31 253.0 33.5 318 224-603 1-358 (359)
52 cd03794 GT1_wbuB_like This fam 100.0 5.9E-26 1.3E-30 248.5 35.0 339 224-598 1-393 (394)
53 cd03816 GT1_ALG1_like This fam 100.0 7.7E-26 1.7E-30 262.7 36.9 340 222-592 3-405 (415)
54 PLN00142 sucrose synthase 100.0 1.5E-26 3.3E-31 283.4 32.3 285 283-602 408-768 (815)
55 PLN02846 digalactosyldiacylgly 99.9 1.9E-25 4.1E-30 262.0 33.8 333 221-605 3-392 (462)
56 PLN02949 transferase, transfer 99.9 9.1E-26 2E-30 266.2 30.7 231 350-608 217-460 (463)
57 cd03806 GT1_ALG11_like This fa 99.9 1.1E-24 2.4E-29 253.8 33.3 341 224-594 2-415 (419)
58 TIGR02918 accessory Sec system 99.9 5.2E-25 1.1E-29 262.0 30.4 283 275-605 203-500 (500)
59 TIGR03087 stp1 sugar transfera 99.9 1.4E-24 3E-29 249.5 29.7 224 349-603 168-395 (397)
60 cd04946 GT1_AmsK_like This fam 99.9 1.7E-23 3.7E-28 242.6 28.3 243 318-598 154-405 (407)
61 PHA01630 putative group 1 glyc 99.9 5.6E-23 1.2E-27 233.1 30.6 295 238-604 13-330 (331)
62 cd04949 GT1_gtfA_like This fam 99.9 1.3E-23 2.7E-28 237.3 24.7 272 281-597 97-371 (372)
63 cd03804 GT1_wbaZ_like This fam 99.9 2.5E-23 5.5E-28 233.4 26.9 305 224-590 1-346 (351)
64 PLN02501 digalactosyldiacylgly 99.9 8.8E-23 1.9E-27 243.8 30.0 330 222-602 355-707 (794)
65 PLN02275 transferase, transfer 99.9 5.3E-22 1.1E-26 227.2 31.4 254 279-566 96-371 (371)
66 KOG1111 N-acetylglucosaminyltr 99.9 9.5E-23 2.1E-27 225.6 19.8 334 224-608 2-370 (426)
67 PHA01633 putative glycosyl tra 99.9 3.3E-21 7.1E-26 218.7 30.4 298 234-599 10-334 (335)
68 cd03785 GT1_MurG MurG is an N- 99.9 3.9E-21 8.5E-26 215.3 28.4 304 225-594 2-347 (350)
69 PRK00726 murG undecaprenyldiph 99.9 1.6E-20 3.5E-25 212.3 29.5 313 223-603 2-356 (357)
70 TIGR01133 murG undecaprenyldip 99.9 1.2E-20 2.5E-25 211.4 26.3 304 223-595 1-345 (348)
71 PRK13609 diacylglycerol glucos 99.9 3E-20 6.6E-25 212.3 30.1 322 221-605 3-372 (380)
72 cd03793 GT1_Glycogen_synthase_ 99.9 1.4E-19 3.1E-24 214.6 36.4 301 282-607 147-589 (590)
73 PF00534 Glycos_transf_1: Glyc 99.9 7.9E-21 1.7E-25 192.2 19.3 169 398-585 2-172 (172)
74 cd03788 GT1_TPS Trehalose-6-Ph 99.8 6.4E-20 1.4E-24 216.6 21.2 285 283-600 131-457 (460)
75 TIGR02400 trehalose_OtsA alpha 99.8 4.2E-19 9E-24 209.5 26.8 281 285-602 129-454 (456)
76 PRK13608 diacylglycerol glucos 99.8 3E-18 6.6E-23 198.1 31.7 324 221-607 4-374 (391)
77 PLN02605 monogalactosyldiacylg 99.8 8.9E-19 1.9E-23 201.5 26.4 277 275-601 92-378 (382)
78 COG0297 GlgA Glycogen synthase 99.8 1.5E-17 3.2E-22 196.3 32.0 357 223-611 1-484 (487)
79 PRK00025 lpxB lipid-A-disaccha 99.8 1.3E-16 2.7E-21 182.0 29.4 326 223-605 2-374 (380)
80 cd01635 Glycosyltransferase_GT 99.8 1E-16 2.2E-21 164.8 23.8 223 226-550 2-229 (229)
81 KOG0853 Glycosyltransferase [C 99.8 4.8E-17 1E-21 190.1 23.8 238 350-604 206-467 (495)
82 cd04950 GT1_like_1 Glycosyltra 99.7 9.4E-16 2E-20 175.8 30.2 245 315-604 121-371 (373)
83 PLN03063 alpha,alpha-trehalose 99.7 1.3E-16 2.7E-21 199.4 24.0 286 285-607 149-480 (797)
84 TIGR00236 wecB UDP-N-acetylglu 99.7 5.9E-16 1.3E-20 176.3 26.1 260 275-582 78-345 (365)
85 PRK14501 putative bifunctional 99.7 1.2E-15 2.6E-20 189.8 19.9 285 285-607 135-465 (726)
86 cd03786 GT1_UDP-GlcNAc_2-Epime 99.7 1.7E-14 3.7E-19 162.9 26.7 299 224-571 1-340 (363)
87 COG0438 RfaG Glycosyltransfera 99.6 1.1E-13 2.4E-18 146.8 28.1 223 354-607 151-379 (381)
88 PRK09814 beta-1,6-galactofuran 99.6 6.6E-14 1.4E-18 158.7 28.0 287 235-591 15-318 (333)
89 TIGR02398 gluc_glyc_Psyn gluco 99.6 3.9E-13 8.5E-18 159.5 27.3 281 285-602 134-480 (487)
90 KOG1387 Glycosyltransferase [C 99.6 1.8E-12 3.9E-17 143.8 28.1 267 315-609 171-463 (465)
91 PF13692 Glyco_trans_1_4: Glyc 99.5 6.7E-14 1.4E-18 136.4 10.0 133 411-568 2-135 (135)
92 TIGR00215 lpxB lipid-A-disacch 99.5 2.5E-11 5.4E-16 140.9 28.9 298 222-569 5-348 (385)
93 KOG2941 Beta-1,4-mannosyltrans 99.4 2.8E-10 6.1E-15 126.8 31.3 168 410-592 253-429 (444)
94 PLN03064 alpha,alpha-trehalose 99.4 2.1E-11 4.5E-16 153.4 23.1 285 285-605 233-562 (934)
95 TIGR03713 acc_sec_asp1 accesso 99.3 1E-11 2.2E-16 149.2 16.4 165 413-602 321-519 (519)
96 COG0707 MurG UDP-N-acetylgluco 99.2 1.4E-08 3.1E-13 117.1 31.5 299 234-598 10-351 (357)
97 PRK12446 undecaprenyldiphospho 99.1 1.2E-08 2.5E-13 117.5 25.3 275 233-571 10-328 (352)
98 PF05693 Glycogen_syn: Glycoge 99.0 2.2E-08 4.7E-13 119.9 23.6 302 285-607 145-584 (633)
99 TIGR02094 more_P_ylases alpha- 99.0 5E-08 1.1E-12 119.4 25.9 184 407-602 385-598 (601)
100 PF13524 Glyco_trans_1_2: Glyc 98.9 5.5E-09 1.2E-13 96.7 9.8 89 503-598 1-90 (92)
101 PRK10117 trehalose-6-phosphate 98.8 5.3E-07 1.2E-11 107.2 25.5 287 285-607 125-456 (474)
102 PF00982 Glyco_transf_20: Glyc 98.8 5.2E-07 1.1E-11 107.8 24.9 291 278-602 135-472 (474)
103 TIGR03568 NeuC_NnaA UDP-N-acet 98.8 1.5E-06 3.3E-11 100.7 28.0 296 223-567 1-338 (365)
104 TIGR03492 conserved hypothetic 98.8 4.3E-07 9.4E-12 106.3 23.1 299 234-583 6-376 (396)
105 PF04413 Glycos_transf_N: 3-De 98.8 1.2E-09 2.6E-14 115.3 1.6 164 192-386 5-184 (186)
106 TIGR02919 accessory Sec system 98.7 1.6E-07 3.4E-12 111.3 14.3 173 352-571 238-414 (438)
107 COG3914 Spy Predicted O-linked 98.7 1.9E-06 4E-11 102.4 22.3 330 219-607 256-616 (620)
108 TIGR03590 PseG pseudaminic aci 98.7 6.4E-06 1.4E-10 92.1 25.0 99 411-535 171-269 (279)
109 PLN02205 alpha,alpha-trehalose 98.6 8E-06 1.7E-10 103.9 26.1 287 285-605 203-552 (854)
110 COG0763 LpxB Lipid A disacchar 98.6 2.4E-05 5.3E-10 90.1 27.0 297 223-571 2-347 (381)
111 PF13439 Glyco_transf_4: Glyco 98.6 2.2E-07 4.8E-12 92.5 9.4 142 226-386 2-173 (177)
112 PF02684 LpxB: Lipid-A-disacch 98.5 7.7E-06 1.7E-10 95.2 22.2 285 237-571 10-343 (373)
113 cd03784 GT1_Gtf_like This fami 98.5 0.00011 2.4E-09 85.0 31.4 98 455-570 271-374 (401)
114 TIGR01426 MGT glycosyltransfer 98.5 5.1E-05 1.1E-09 88.0 27.5 103 454-572 255-363 (392)
115 COG0380 OtsA Trehalose-6-phosp 98.4 4.3E-05 9.4E-10 91.1 25.5 288 285-603 149-478 (486)
116 COG0381 WecB UDP-N-acetylgluco 98.4 0.00014 3.1E-09 84.1 27.4 310 222-581 3-351 (383)
117 PF13844 Glyco_transf_41: Glyc 98.4 7.1E-06 1.5E-10 97.5 16.8 182 401-605 275-467 (468)
118 PRK01021 lpxB lipid-A-disaccha 98.3 0.00022 4.8E-09 87.0 28.3 301 213-571 217-574 (608)
119 PF13528 Glyco_trans_1_3: Glyc 98.3 0.0002 4.3E-09 80.2 26.2 269 223-565 1-317 (318)
120 PF13579 Glyco_trans_4_4: Glyc 98.3 3.3E-06 7.2E-11 82.7 9.0 132 235-381 1-159 (160)
121 PF04007 DUF354: Protein of un 98.2 0.00038 8.2E-09 80.3 25.9 267 236-567 11-309 (335)
122 cd04299 GT1_Glycogen_Phosphory 98.2 2.9E-05 6.4E-10 97.5 17.1 182 407-603 474-689 (778)
123 TIGR00661 MJ1255 conserved hyp 98.0 0.0024 5.3E-08 72.5 26.8 81 484-571 230-317 (321)
124 PF02350 Epimerase_2: UDP-N-ac 97.9 0.00035 7.6E-09 80.8 17.8 249 274-570 58-320 (346)
125 COG1817 Uncharacterized protei 97.9 0.0022 4.8E-08 72.3 22.0 274 236-571 11-317 (346)
126 PF13477 Glyco_trans_4_2: Glyc 97.8 0.00061 1.3E-08 67.0 15.1 119 224-361 1-139 (139)
127 COG3980 spsG Spore coat polysa 97.5 0.0098 2.1E-07 66.5 20.4 280 223-572 1-297 (318)
128 PRK10017 colanic acid biosynth 97.5 0.38 8.2E-06 57.7 34.4 227 315-571 147-395 (426)
129 PRK02797 4-alpha-L-fucosyltran 97.4 0.016 3.5E-07 65.9 21.0 169 411-607 145-319 (322)
130 PRK14089 ipid-A-disaccharide s 97.4 0.0067 1.4E-07 70.5 18.4 50 469-532 211-260 (347)
131 COG1819 Glycosyl transferases, 97.4 0.023 4.9E-07 67.4 23.0 86 479-572 281-372 (406)
132 PF04464 Glyphos_transf: CDP-G 97.1 0.0051 1.1E-07 71.1 14.0 227 314-571 97-339 (369)
133 PF04101 Glyco_tran_28_C: Glyc 97.0 0.00013 2.7E-09 74.9 -0.8 105 455-571 33-147 (167)
134 COG4671 Predicted glycosyl tra 96.8 0.23 5E-06 57.5 22.9 304 222-570 9-367 (400)
135 PF07429 Glyco_transf_56: 4-al 96.7 1.5 3.2E-05 51.1 28.6 165 411-604 184-355 (360)
136 PHA03392 egt ecdysteroid UDP-g 96.7 0.062 1.3E-06 65.6 18.4 86 479-572 343-436 (507)
137 KOG3742 Glycogen synthase [Car 96.6 0.13 2.7E-06 60.7 18.9 73 493-567 493-577 (692)
138 PF06258 Mito_fiss_Elm1: Mitoc 96.6 0.27 5.8E-06 56.6 21.8 241 236-536 2-259 (311)
139 PF09314 DUF1972: Domain of un 96.5 0.025 5.4E-07 60.3 11.9 149 224-385 3-185 (185)
140 COG4641 Uncharacterized protei 96.4 0.1 2.2E-06 60.7 17.1 117 484-605 238-362 (373)
141 PLN02562 UDP-glycosyltransfera 95.8 0.16 3.4E-06 61.1 15.2 94 484-582 329-427 (448)
142 PLN03004 UDP-glycosyltransfera 95.8 0.1 2.2E-06 62.9 13.4 98 484-586 335-442 (451)
143 PLN03007 UDP-glucosyltransfera 95.6 0.43 9.4E-06 57.9 17.9 114 484-602 346-478 (482)
144 KOG4626 O-linked N-acetylgluco 95.5 0.18 4E-06 61.4 14.0 193 401-615 749-951 (966)
145 PF00201 UDPGT: UDP-glucoronos 95.3 0.11 2.4E-06 62.4 11.5 83 484-571 324-412 (500)
146 PLN02863 UDP-glucoronosyl/UDP- 95.1 0.87 1.9E-05 55.4 18.2 113 484-603 344-470 (477)
147 COG3660 Predicted nucleoside-d 94.8 9.2 0.0002 43.3 25.1 250 234-535 10-274 (329)
148 PLN02448 UDP-glycosyltransfera 94.8 0.84 1.8E-05 55.1 17.1 81 484-569 324-416 (459)
149 PF08323 Glyco_transf_5: Starc 94.7 0.14 2.9E-06 56.7 9.4 139 224-366 1-228 (245)
150 PLN02167 UDP-glycosyltransfera 94.6 0.54 1.2E-05 57.1 15.0 99 484-589 341-456 (475)
151 PLN02410 UDP-glucoronosyl/UDP- 94.4 1 2.3E-05 54.3 16.7 80 484-570 325-412 (451)
152 cd03789 GT1_LPS_heptosyltransf 94.4 6.9 0.00015 43.5 22.1 99 412-532 123-223 (279)
153 PLN02210 UDP-glucosyl transfer 94.3 1.2 2.5E-05 54.0 16.8 100 484-588 325-438 (456)
154 PRK10916 ADP-heptose:LPS hepto 94.2 13 0.00029 42.8 26.2 111 401-532 170-286 (348)
155 PLN02173 UDP-glucosyl transfer 94.1 0.71 1.5E-05 55.8 14.3 82 484-570 318-410 (449)
156 TIGR03609 S_layer_CsaB polysac 94.1 5.5 0.00012 44.9 20.7 57 469-533 220-276 (298)
157 PLN02670 transferase, transfer 93.7 0.25 5.5E-06 59.8 9.5 111 485-604 341-461 (472)
158 PLN02554 UDP-glycosyltransfera 92.8 1.3 2.8E-05 53.9 13.8 98 484-588 343-461 (481)
159 PF04230 PS_pyruv_trans: Polys 92.7 13 0.00028 39.7 19.9 38 490-534 247-284 (286)
160 COG0058 GlgP Glucan phosphoryl 92.6 1.7 3.7E-05 55.2 14.5 138 407-552 483-630 (750)
161 PLN02992 coniferyl-alcohol glu 92.6 1.9 4.2E-05 52.5 14.8 115 484-603 339-468 (481)
162 PLN02152 indole-3-acetate beta 92.3 1.4 3E-05 53.4 13.0 82 484-570 328-419 (455)
163 PLN02207 UDP-glycosyltransfera 92.3 2 4.4E-05 52.2 14.4 100 484-588 333-448 (468)
164 PLN02764 glycosyltransferase f 91.4 7.3 0.00016 47.3 17.6 80 485-569 319-408 (453)
165 PLN02555 limonoid glucosyltran 91.2 6.2 0.00013 48.2 17.0 98 484-588 338-452 (480)
166 COG0859 RfaF ADP-heptose:LPS h 90.8 21 0.00046 41.3 20.1 64 457-532 211-276 (334)
167 PLN02534 UDP-glycosyltransfera 89.7 4.2 9E-05 49.8 13.7 112 484-600 345-482 (491)
168 TIGR02195 heptsyl_trn_II lipop 89.1 5.5 0.00012 45.6 13.5 111 399-532 162-276 (334)
169 PF10087 DUF2325: Uncharacteri 88.9 1.6 3.6E-05 41.4 7.7 77 457-541 3-90 (97)
170 PLN00414 glycosyltransferase f 88.5 18 0.00039 43.9 17.8 78 485-569 314-403 (446)
171 PLN00164 glucosyltransferase; 88.5 2.4 5.3E-05 51.6 10.6 81 485-570 341-433 (480)
172 PF05159 Capsule_synth: Capsul 88.2 2.4 5.2E-05 47.2 9.6 71 452-533 154-225 (269)
173 PLN02208 glycosyltransferase f 87.9 2.3 4.9E-05 51.4 9.8 82 484-570 312-403 (442)
174 KOG1050 Trehalose-6-phosphate 86.2 18 0.0004 46.4 16.7 151 409-571 274-443 (732)
175 PRK10422 lipopolysaccharide co 86.2 7 0.00015 45.3 12.2 103 410-532 183-287 (352)
176 PRK14986 glycogen phosphorylas 85.0 7.4 0.00016 50.2 12.4 188 407-608 539-750 (815)
177 TIGR02201 heptsyl_trn_III lipo 83.5 15 0.00032 42.4 13.2 103 410-532 181-285 (344)
178 PF15024 Glyco_transf_18: Glyc 82.7 8.5 0.00018 47.6 11.1 76 490-570 331-432 (559)
179 TIGR02193 heptsyl_trn_I lipopo 82.4 18 0.0004 41.0 13.3 99 410-532 179-279 (319)
180 PF00343 Phosphorylase: Carboh 81.9 20 0.00044 45.8 14.2 146 407-559 440-602 (713)
181 PF11440 AGT: DNA alpha-glucos 81.2 1.1E+02 0.0024 35.3 19.5 290 236-568 2-353 (355)
182 TIGR02093 P_ylase glycogen/sta 80.4 8.5 0.00018 49.5 10.4 148 407-561 523-687 (794)
183 PRK10964 ADP-heptose:LPS hepto 79.9 14 0.0003 42.2 11.2 99 410-532 178-278 (322)
184 KOG1192 UDP-glucuronosyl and U 79.6 32 0.00069 41.4 14.7 138 410-571 277-425 (496)
185 cd04300 GT1_Glycogen_Phosphory 78.1 11 0.00023 48.7 10.4 147 407-560 526-689 (797)
186 KOG3349 Predicted glycosyltran 75.9 21 0.00046 37.4 9.8 103 411-532 4-106 (170)
187 PF01075 Glyco_transf_9: Glyco 75.4 17 0.00037 39.4 9.9 104 408-532 103-208 (247)
188 COG2327 WcaK Polysaccharide py 74.6 2E+02 0.0043 34.6 26.9 92 469-570 253-352 (385)
189 PRK14985 maltodextrin phosphor 74.3 13 0.00029 47.8 9.7 147 407-560 525-688 (798)
190 PF03016 Exostosin: Exostosin 72.6 4 8.6E-05 45.6 4.2 70 492-563 228-300 (302)
191 PLN03015 UDP-glucosyl transfer 66.7 22 0.00047 43.6 9.0 99 485-588 337-451 (470)
192 PF11071 DUF2872: Protein of u 66.6 13 0.00029 37.8 5.9 69 495-566 67-140 (141)
193 PF00072 Response_reg: Respons 65.8 37 0.00079 31.5 8.6 102 458-563 2-112 (112)
194 COG0373 HemA Glutamyl-tRNA red 63.2 3.3E+02 0.0071 33.2 17.6 94 457-560 205-302 (414)
195 TIGR03646 YtoQ_fam YtoQ family 62.8 20 0.00043 36.7 6.3 69 495-566 70-143 (144)
196 PRK10840 transcriptional regul 62.3 71 0.0015 33.9 11.0 114 454-570 4-128 (216)
197 COG1887 TagB Putative glycosyl 58.1 3.7E+02 0.008 32.3 16.9 195 350-571 145-356 (388)
198 PRK10936 TMAO reductase system 55.2 2.4E+02 0.0052 32.5 14.5 78 194-290 33-111 (343)
199 PRK10360 DNA-binding transcrip 53.0 85 0.0018 32.0 9.4 109 457-569 4-119 (196)
200 PF06925 MGDG_synth: Monogalac 52.5 41 0.0009 34.9 7.0 82 275-380 81-166 (169)
201 KOG1021 Acetylglucosaminyltran 49.6 1.2E+02 0.0025 37.3 11.2 71 492-567 335-408 (464)
202 KOG2884 26S proteasome regulat 49.0 2.1E+02 0.0046 31.9 11.6 53 519-571 178-232 (259)
203 TIGR00715 precor6x_red precorr 48.5 4.5E+02 0.0098 29.8 22.7 86 473-566 165-255 (256)
204 PRK13435 response regulator; P 45.2 2.8E+02 0.0062 27.0 11.4 108 457-567 8-120 (145)
205 COG2204 AtoC Response regulato 42.6 2E+02 0.0044 35.4 11.5 110 457-571 7-125 (464)
206 TIGR02154 PhoB phosphate regul 40.5 2.4E+02 0.0052 29.1 10.6 106 457-567 5-121 (226)
207 PRK09483 response regulator; P 38.5 2.5E+02 0.0054 29.0 10.3 109 457-569 4-122 (217)
208 PF12038 DUF3524: Domain of un 37.7 2E+02 0.0043 30.8 9.2 117 223-364 1-130 (168)
209 PF03033 Glyco_transf_28: Glyc 36.6 49 0.0011 32.4 4.4 31 232-262 6-36 (139)
210 PRK05583 ribosomal protein L7A 35.7 1.6E+02 0.0035 28.9 7.7 78 429-523 21-98 (104)
211 PRK10643 DNA-binding transcrip 35.4 3.1E+02 0.0067 28.2 10.4 105 458-567 4-117 (222)
212 CHL00148 orf27 Ycf27; Reviewed 35.0 4.5E+02 0.0098 27.5 11.8 109 453-567 6-122 (240)
213 PRK00676 hemA glutamyl-tRNA re 34.6 6.4E+02 0.014 29.9 13.6 131 457-605 177-319 (338)
214 PRK01906 tetraacyldisaccharide 34.4 1E+02 0.0023 36.2 7.3 38 227-264 59-98 (338)
215 PRK10161 transcriptional regul 33.8 3.5E+02 0.0077 28.3 10.7 106 457-567 5-121 (229)
216 PRK09468 ompR osmolarity respo 33.7 3.9E+02 0.0085 28.2 11.1 106 457-567 8-122 (239)
217 PRK10336 DNA-binding transcrip 33.5 4E+02 0.0088 27.4 10.9 106 457-567 3-117 (219)
218 PF05686 Glyco_transf_90: Glyc 32.9 2.1E+02 0.0046 34.3 9.7 91 515-608 226-324 (395)
219 PF10093 DUF2331: Uncharacteri 32.6 3.9E+02 0.0084 32.1 11.5 108 398-532 168-288 (374)
220 PF04609 MCR_C: Methyl-coenzym 32.1 1.4E+02 0.003 34.0 7.2 97 218-322 66-162 (268)
221 KOG0832 Mitochondrial/chloropl 32.0 6.8E+02 0.015 28.4 12.3 50 480-541 162-212 (251)
222 PRK10430 DNA-binding transcrip 31.8 3.9E+02 0.0084 28.9 10.8 107 457-567 4-122 (239)
223 PF10933 DUF2827: Protein of u 31.6 4E+02 0.0087 31.9 11.2 136 455-602 224-363 (364)
224 PRK10046 dpiA two-component re 31.6 4.3E+02 0.0094 28.3 11.1 107 457-567 7-123 (225)
225 PRK07714 hypothetical protein; 31.3 2.2E+02 0.0048 27.5 7.8 77 429-522 22-98 (100)
226 PRK11083 DNA-binding response 30.4 4.2E+02 0.0092 27.3 10.5 106 457-567 6-120 (228)
227 cd06318 PBP1_ABC_sugar_binding 30.4 3.6E+02 0.0078 29.3 10.4 62 224-290 1-62 (282)
228 cd06320 PBP1_allose_binding Pe 30.0 4.7E+02 0.01 28.3 11.2 38 224-261 1-38 (275)
229 PF01408 GFO_IDH_MocA: Oxidore 29.7 2.6E+02 0.0056 26.6 8.1 67 452-532 24-92 (120)
230 cd06316 PBP1_ABC_sugar_binding 29.5 4.6E+02 0.01 28.9 11.2 38 224-261 1-38 (294)
231 PRK09958 DNA-binding transcrip 29.3 4E+02 0.0086 27.2 10.0 107 457-568 3-119 (204)
232 PRK09935 transcriptional regul 29.3 6.2E+02 0.013 25.7 11.4 110 457-570 6-125 (210)
233 cd06310 PBP1_ABC_sugar_binding 29.2 5.5E+02 0.012 27.7 11.5 37 224-260 1-37 (273)
234 PF03358 FMN_red: NADPH-depend 28.1 1.4E+02 0.003 30.1 6.1 40 223-262 1-41 (152)
235 PRK10017 colanic acid biosynth 27.9 4.1E+02 0.0088 32.4 10.9 43 492-535 109-157 (426)
236 TIGR03787 marine_sort_RR prote 27.7 5.3E+02 0.011 26.9 10.7 106 458-567 4-119 (227)
237 PF02606 LpxK: Tetraacyldisacc 27.4 1.1E+02 0.0023 35.9 5.8 39 226-264 37-77 (326)
238 cd06315 PBP1_ABC_sugar_binding 27.0 6.8E+02 0.015 27.5 11.9 64 223-291 1-64 (280)
239 cd06302 PBP1_LsrB_Quorum_Sensi 27.0 5.6E+02 0.012 28.5 11.4 87 224-322 1-87 (298)
240 PRK10569 NAD(P)H-dependent FMN 26.8 4.4E+02 0.0095 28.4 10.0 40 223-262 1-41 (191)
241 PRK10816 DNA-binding transcrip 26.3 5.2E+02 0.011 26.9 10.4 106 457-567 3-117 (223)
242 PRK09836 DNA-binding transcrip 26.2 5.7E+02 0.012 26.7 10.7 105 458-567 4-117 (227)
243 PRK10766 DNA-binding transcrip 26.0 5.7E+02 0.012 26.5 10.6 106 457-567 5-118 (221)
244 PF13844 Glyco_transf_41: Glyc 25.8 5.8E+02 0.012 31.6 11.7 39 224-262 2-40 (468)
245 PRK09581 pleD response regulat 25.7 4.5E+02 0.0097 30.7 10.7 106 457-567 5-121 (457)
246 smart00672 CAP10 Putative lipo 25.7 3E+02 0.0064 31.2 8.7 86 514-603 156-247 (256)
247 PF00532 Peripla_BP_1: Peripla 25.5 5.7E+02 0.012 28.7 11.0 82 223-322 2-85 (279)
248 PF03154 Atrophin-1: Atrophin- 25.4 57 0.0012 42.8 3.3 33 1070-1103 718-750 (982)
249 cd05565 PTS_IIB_lactose PTS_II 25.1 2E+02 0.0043 28.0 6.3 75 456-535 3-81 (99)
250 PRK13398 3-deoxy-7-phosphohept 24.9 6.2E+02 0.013 28.9 11.1 101 413-534 28-142 (266)
251 cd06300 PBP1_ABC_sugar_binding 24.6 6.9E+02 0.015 26.9 11.3 64 224-291 1-68 (272)
252 TIGR03837 efp_adjacent_2 conse 24.6 5.9E+02 0.013 30.6 11.0 107 399-532 168-286 (371)
253 cd06306 PBP1_TorT-like TorT-li 24.4 6.7E+02 0.014 27.3 11.2 86 224-322 1-87 (268)
254 PRK13940 glutamyl-tRNA reducta 24.1 4E+02 0.0086 32.3 9.9 71 457-540 208-278 (414)
255 PRK10955 DNA-binding transcrip 24.0 4.8E+02 0.01 27.2 9.6 106 457-567 4-116 (232)
256 PRK00652 lpxK tetraacyldisacch 23.9 1.7E+02 0.0036 34.4 6.5 38 227-264 52-91 (325)
257 KOG3332 N-acetylglucosaminyl p 23.9 3.7E+02 0.0081 30.2 8.6 39 224-264 39-77 (247)
258 PF01081 Aldolase: KDPG and KH 23.4 5.1E+02 0.011 28.3 9.7 81 433-531 46-126 (196)
259 PRK10701 DNA-binding transcrip 23.2 7.1E+02 0.015 26.3 10.8 106 457-567 4-117 (240)
260 PRK10529 DNA-binding transcrip 22.8 6.6E+02 0.014 26.1 10.4 106 457-567 4-117 (225)
261 cd06305 PBP1_methylthioribose_ 22.6 7.9E+02 0.017 26.4 11.2 37 224-260 1-37 (273)
262 PTZ00106 60S ribosomal protein 22.6 3.2E+02 0.007 27.0 7.3 48 453-502 41-88 (108)
263 PRK11173 two-component respons 22.2 7.5E+02 0.016 26.2 10.8 106 457-567 6-119 (237)
264 TIGR02069 cyanophycinase cyano 22.0 3.9E+02 0.0085 30.1 8.8 80 457-536 31-126 (250)
265 cd06297 PBP1_LacI_like_12 Liga 22.0 7.7E+02 0.017 26.7 11.0 38 225-262 2-39 (269)
266 PRK13602 putative ribosomal pr 21.9 2.9E+02 0.0062 25.9 6.5 56 429-499 15-70 (82)
267 PRK04155 chaperone protein Hch 21.3 9.9E+02 0.021 27.6 11.9 41 222-262 49-100 (287)
268 PRK01372 ddl D-alanine--D-alan 20.9 2.7E+02 0.0058 31.4 7.3 59 220-289 2-62 (304)
269 cd01540 PBP1_arabinose_binding 20.8 7.6E+02 0.016 26.9 10.7 85 224-322 1-85 (289)
270 PRK10355 xylF D-xylose transpo 20.6 1E+03 0.022 27.3 12.1 66 221-291 24-89 (330)
271 TIGR02026 BchE magnesium-proto 20.6 3.9E+02 0.0084 33.0 9.1 65 224-293 1-73 (497)
272 cd01574 PBP1_LacI Ligand-bindi 20.5 8.8E+02 0.019 25.9 11.0 61 225-289 2-62 (264)
273 PF01113 DapB_N: Dihydrodipico 20.4 1.2E+02 0.0025 30.2 3.8 46 492-539 59-104 (124)
274 PF00862 Sucrose_synth: Sucros 20.2 4.1E+02 0.0088 33.3 8.8 73 282-364 400-479 (550)
275 PRK04175 rpl7ae 50S ribosomal 20.2 4.7E+02 0.01 26.4 8.0 78 429-523 34-113 (122)
276 PRK10494 hypothetical protein; 20.1 5.1E+02 0.011 29.3 9.2 81 451-535 119-210 (259)
No 1
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.8e-35 Score=332.52 Aligned_cols=383 Identities=19% Similarity=0.193 Sum_probs=315.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCcCCCCCccccccccceeeeecccCCC--CCccccccCCCCCCCCCCEEEEE
Q 001292 151 LLYFMIFLAVFAFAMASMVLQNSIASVFGAERGRPIREELRFGSRLKFVPDQVGF--GNGLDGLRSTPRFGVRPPRIGLI 228 (1106)
Q Consensus 151 ~~y~ll~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ger~gf~~~~~~~--~~~~~ha~Sv~r~g~r~~RIalV 228 (1106)
++|++|+++++|| ++.+++||+.+.|.|++| |+|||||.++...+ +.+|.|++||
T Consensus 3 ~lY~~l~~~~~p~-~~~~l~~R~~~~~~y~~r---------~~eRfg~~~~~~~~~~p~vWiHaaSV------------- 59 (419)
T COG1519 3 FLYRLLLTLALPF-IAPRLLYRSFKGPKYRKR---------LGERFGFYKPPVKPEGPLVWIHAASV------------- 59 (419)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHhhcChHHHHH---------HHHHhcccCCCCCCCCCeEEEEecch-------------
Confidence 6899999999999 999999999999999999 89999988877754 6779999999
Q ss_pred eCCCCCChhHHHHHHHHHHHHHC--CCEEEEEEcCCCCchHHHHHHhHHHHHhhccCccEEEEccccHHHHHHHHHHHhh
Q 001292 229 LGNMAKDSRSLLLITVVKNLQKL--GYVFKIYAVRSGNSHSLWEQIAGQISILGQEQYSLIDWSIFDGIIADSLEAKEAI 306 (1106)
Q Consensus 229 lg~L~~gGesl~vv~LakaLqe~--GyeVtV~t~~dg~~~~i~r~lg~lvkiIr~~~pDiIh~~~~~~i~v~~La~k~~i 306 (1106)
|+++++.+|+++|+++ ++.|.++++++++.+.....++.. -..+|.++|.......|+..+.++.++
T Consensus 60 -------GEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~----v~h~YlP~D~~~~v~rFl~~~~P~l~I 128 (419)
T COG1519 60 -------GEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDS----VIHQYLPLDLPIAVRRFLRKWRPKLLI 128 (419)
T ss_pred -------hHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCC----eEEEecCcCchHHHHHHHHhcCCCEEE
Confidence 9999999999999999 999999999998887776665533 234777888888888888888888877
Q ss_pred hhcccCC---------CCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecCCChhhhhcCCCCCCEE
Q 001292 307 SSLMQEP---------FHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPMLYSVLDAGNFF 377 (1106)
Q Consensus 307 dII~te~---------~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~~~~~~~~gi~~~KI~ 377 (1106)
++++|. ..++|++.. |++++.++.. ++.++....+..++..|.|++++..+.+++..+...++.
T Consensus 129 -i~EtElWPnli~e~~~~~~p~~Lv--NaRLS~rS~~----~y~k~~~~~~~~~~~i~li~aQse~D~~Rf~~LGa~~v~ 201 (419)
T COG1519 129 -IMETELWPNLINELKRRGIPLVLV--NARLSDRSFA----RYAKLKFLARLLFKNIDLILAQSEEDAQRFRSLGAKPVV 201 (419)
T ss_pred -EEeccccHHHHHHHHHcCCCEEEE--eeeechhhhH----HHHHHHHHHHHHHHhcceeeecCHHHHHHHHhcCCcceE
Confidence 888887 679999988 9999988763 124445555678899999999999999986655556699
Q ss_pred EeCCCCCCcccccccCcc--hhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeE
Q 001292 378 VIPGSPADVWAVEAYSKS--HEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFK 455 (1106)
Q Consensus 378 VIpN~GVDl~~~e~F~ps--~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~Pdik 455 (1106)
+..|.++|+ ...+. .....+|.+++.+ +++|+++| +|+| +.+.++++++.|++.+ |+..
T Consensus 202 v~GNlKfd~----~~~~~~~~~~~~~r~~l~~~--r~v~iaaS----TH~G--Eeei~l~~~~~l~~~~-------~~~l 262 (419)
T COG1519 202 VTGNLKFDI----EPPPQLAAELAALRRQLGGH--RPVWVAAS----THEG--EEEIILDAHQALKKQF-------PNLL 262 (419)
T ss_pred EecceeecC----CCChhhHHHHHHHHHhcCCC--CceEEEec----CCCc--hHHHHHHHHHHHHhhC-------CCce
Confidence 999999997 33332 2446778887764 78999998 7877 8899999998887644 7875
Q ss_pred EEEEEcCCCCccHHHHHHHHHHcCC------------CCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHH
Q 001292 456 FVFLCGNSTDGYNDALQEVASRLGL------------LEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAM 523 (1106)
Q Consensus 456 fLIIVG~GperY~eeLkeLaeklGL------------~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAM 523 (1106)
||+|++||++ ++.+++++++.|+ .+++|.+.+.++++..+|+.|||.|+++++. +-+|+++||++
T Consensus 263 -lIlVPRHpER-f~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv-~~GGHN~LEpa 339 (419)
T COG1519 263 -LILVPRHPER-FKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLV-PIGGHNPLEPA 339 (419)
T ss_pred -EEEecCChhh-HHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCccc-CCCCCChhhHH
Confidence 8999999999 9999999999988 3357999999999999999999999999987 68999999999
Q ss_pred HhCCCEEec----CCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Q 001292 524 TFGIPVITP----DFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYA 599 (1106)
Q Consensus 524 A~G~PVIAS----D~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~ 599 (1106)
++|+|||++ |+..+.+.+.....|+.+ +|.+.|++++..+++|++. +.+|++++..+++++-- ..+++.
T Consensus 340 ~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~v--~~~~~l~~~v~~l~~~~~~---r~~~~~~~~~~v~~~~g--al~r~l 412 (419)
T COG1519 340 AFGTPVIFGPYTFNFSDIAERLLQAGAGLQV--EDADLLAKAVELLLADEDK---REAYGRAGLEFLAQNRG--ALARTL 412 (419)
T ss_pred HcCCCEEeCCccccHHHHHHHHHhcCCeEEE--CCHHHHHHHHHHhcCCHHH---HHHHHHHHHHHHHHhhH--HHHHHH
Confidence 999999997 566777777555455555 5788899999999998776 68999999999877543 334444
Q ss_pred HHHH
Q 001292 600 RILE 603 (1106)
Q Consensus 600 eLye 603 (1106)
+.++
T Consensus 413 ~~l~ 416 (419)
T COG1519 413 EALK 416 (419)
T ss_pred HHhh
Confidence 4443
No 2
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=2.8e-33 Score=316.28 Aligned_cols=349 Identities=17% Similarity=0.182 Sum_probs=262.1
Q ss_pred CCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCC-chHHHH------------------HHhHHHHHhhcc
Q 001292 222 PPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGN-SHSLWE------------------QIAGQISILGQE 282 (1106)
Q Consensus 222 ~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~-~~~i~r------------------~lg~lvkiIr~~ 282 (1106)
+++|++|+..+..||.+.++.++++.|.+.|+++.|++..+.. ...... ....+.++++..
T Consensus 1 ~~~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~ 80 (374)
T TIGR03088 1 RPLIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEVSAFRKRIQRPDVAFYALHKQPGKDVAVYPQLYRLLRQL 80 (374)
T ss_pred CceEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCCChhHHHHHhcCceEEEeCCCCCCChHHHHHHHHHHHHh
Confidence 4799999999999999999999999999999999888865422 111111 111245667778
Q ss_pred CccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcE-EEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecC
Q 001292 283 QYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPL-VWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPD 361 (1106)
Q Consensus 283 ~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPV-I~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S 361 (1106)
++|+||.+.....+. .+..+. .++|+ +++.|+............ ..++.+ .....+|.+++.+
T Consensus 81 ~~Divh~~~~~~~~~-~~~~~~----------~~~~~~i~~~h~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~i~vs 144 (374)
T TIGR03088 81 RPDIVHTRNLAALEA-QLPAAL----------AGVPARIHGEHGRDVFDLDGSNWK---YRWLRR--LYRPLIHHYVAVS 144 (374)
T ss_pred CCCEEEEcchhHHHH-HHHHHh----------cCCCeEEEeecCcccccchhhHHH---HHHHHH--HHHhcCCeEEEeC
Confidence 999999987654332 222221 34554 555555322111100000 111111 1234678889988
Q ss_pred CChhhh---hcCCCCCCEEEeCCCCCCcccccccCcch-hHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHH
Q 001292 362 YTLPML---YSVLDAGNFFVIPGSPADVWAVEAYSKSH-EKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDV 437 (1106)
Q Consensus 362 ~~~~~~---~~gi~~~KI~VIpN~GVDl~~~e~F~ps~-s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~ 437 (1106)
....+. ..+.+..++.+|+| |+|. +.|.+.. .....+......++.++|+++||+.+ .||++.+++|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~vi~n-gvd~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGrl~~----~Kg~~~li~a~ 216 (374)
T TIGR03088 145 RDLEDWLRGPVKVPPAKIHQIYN-GVDT---ERFHPSRGDRSPILPPDFFADESVVVGTVGRLQA----VKDQPTLVRAF 216 (374)
T ss_pred HHHHHHHHHhcCCChhhEEEecc-Cccc---cccCCCccchhhhhHhhcCCCCCeEEEEEecCCc----ccCHHHHHHHH
Confidence 765554 23567788999998 8997 5565542 22233334444567889999999988 99999999999
Q ss_pred HHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcH
Q 001292 438 GPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPS 517 (1106)
Q Consensus 438 k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGl 517 (1106)
+.+.++.. ...++++ |+++|+|+.. +.++++++.+++.+ +|.|.|+.+++..+|+.||++|+||..| |||+
T Consensus 217 ~~l~~~~~---~~~~~~~-l~i~G~g~~~--~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~adi~v~pS~~E--g~~~ 287 (374)
T TIGR03088 217 ALLVRQLP---EGAERLR-LVIVGDGPAR--GACEQMVRAAGLAH-LVWLPGERDDVPALMQALDLFVLPSLAE--GISN 287 (374)
T ss_pred HHHHHhCc---ccccceE-EEEecCCchH--HHHHHHHHHcCCcc-eEEEcCCcCCHHHHHHhcCEEEeccccc--cCch
Confidence 88875431 1125787 6889999875 88999999999987 8999999999999999999999999886 9999
Q ss_pred HHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcH-HHHHH
Q 001292 518 LIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLA-LDCVT 596 (1106)
Q Consensus 518 vLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fs-ee~v~ 596 (1106)
+++||||||+|||+++.+|++|++.++.+|++++++|+++++++|..++++++. +.+++++|++.+.+.|+ +.++.
T Consensus 288 ~~lEAma~G~Pvv~s~~~g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~~---~~~~~~~a~~~~~~~fs~~~~~~ 364 (374)
T TIGR03088 288 TILEAMASGLPVIATAVGGNPELVQHGVTGALVPPGDAVALARALQPYVSDPAA---RRAHGAAGRARAEQQFSINAMVA 364 (374)
T ss_pred HHHHHHHcCCCEEEcCCCCcHHHhcCCCceEEeCCCCHHHHHHHHHHHHhCHHH---HHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999887 68899999999876665 56666
Q ss_pred HHHHHHHHHh
Q 001292 597 RYARILENVL 606 (1106)
Q Consensus 597 ~Y~eLyeslL 606 (1106)
+|.++|++++
T Consensus 365 ~~~~~y~~~~ 374 (374)
T TIGR03088 365 AYAGLYDQLL 374 (374)
T ss_pred HHHHHHHHhC
Confidence 9999998763
No 3
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=1.2e-31 Score=315.12 Aligned_cols=346 Identities=13% Similarity=0.162 Sum_probs=256.8
Q ss_pred CCCCEEEEEeCCC---CCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchH-----H----------HH-------HHhH
Q 001292 220 VRPPRIGLILGNM---AKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHS-----L----------WE-------QIAG 274 (1106)
Q Consensus 220 ~r~~RIalVlg~L---~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~-----i----------~r-------~lg~ 274 (1106)
.+++||++++... ..+|.+..+.++++.|.++||+|+|++..++.... + +. ....
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~ 135 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQEFHGAKVIGSWSFPCPFYQKVPLSLALSPR 135 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCccccCceeeccCCcCCccCCCceeeccCCHH
Confidence 6788999996432 45898999999999999999999999875432100 0 00 0001
Q ss_pred HHHHhhccCccEEEEccccHHHHHH-HHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHH-HHHHHHhc
Q 001292 275 QISILGQEQYSLIDWSIFDGIIADS-LEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLL-SYWKSVFS 352 (1106)
Q Consensus 275 lvkiIr~~~pDiIh~~~~~~i~v~~-La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~glekli-s~~~~~l~ 352 (1106)
+.+.++..+||+||++......+.. +..+ ..++|+|+++|+.... ....+......+.+ ...+..++
T Consensus 136 l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak----------~~~ip~V~~~h~~~~~-~~~~~~~~~~~~~~~~~~r~~~~ 204 (465)
T PLN02871 136 IISEVARFKPDLIHASSPGIMVFGALFYAK----------LLCVPLVMSYHTHVPV-YIPRYTFSWLVKPMWDIIRFLHR 204 (465)
T ss_pred HHHHHHhCCCCEEEECCCchhHHHHHHHHH----------HhCCCEEEEEecCchh-hhhcccchhhHHHHHHHHHHHHh
Confidence 4566777899999998754333222 2222 1578999999974211 11111110111111 11233567
Q ss_pred cccEEEecCCChhhh--hcC-CCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcC-CCCCcEEEEEEcccCccccccC
Q 001292 353 RVNVIVFPDYTLPML--YSV-LDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENG-FLKDEIVVVVVGSSFFYNELSW 428 (1106)
Q Consensus 353 ~AD~VIa~S~~~~~~--~~g-i~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lG-L~~d~~VIL~VGRl~~y~kg~K 428 (1106)
.+|.+++++...... ..+ .+..++.+||| |+|. +.|.+.......+.++. ..++.++|+++||+.. .|
T Consensus 205 ~ad~ii~~S~~~~~~l~~~~~~~~~kv~vi~n-Gvd~---~~f~p~~~~~~~~~~~~~~~~~~~~i~~vGrl~~----~K 276 (465)
T PLN02871 205 AADLTLVTSPALGKELEAAGVTAANRIRVWNK-GVDS---ESFHPRFRSEEMRARLSGGEPEKPLIVYVGRLGA----EK 276 (465)
T ss_pred hCCEEEECCHHHHHHHHHcCCCCcCeEEEeCC-ccCc---cccCCccccHHHHHHhcCCCCCCeEEEEeCCCch----hh
Confidence 899999998765544 222 34678999998 8998 67766543445565553 3457889999999887 88
Q ss_pred CHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCCh--hhHHHHHHHcCeEEE
Q 001292 429 DYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFN--GDVNGVLLMADIVLY 506 (1106)
Q Consensus 429 g~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~--eDL~~LyaaADVfV~ 506 (1106)
+.+.++++++.+ ++++ |+|+|+|+.. +.++++++. . +|.|+|+. +++..+|+.||++|+
T Consensus 277 ~~~~li~a~~~~-----------~~~~-l~ivG~G~~~--~~l~~~~~~----~-~V~f~G~v~~~ev~~~~~~aDv~V~ 337 (465)
T PLN02871 277 NLDFLKRVMERL-----------PGAR-LAFVGDGPYR--EELEKMFAG----T-PTVFTGMLQGDELSQAYASGDVFVM 337 (465)
T ss_pred hHHHHHHHHHhC-----------CCcE-EEEEeCChHH--HHHHHHhcc----C-CeEEeccCCHHHHHHHHHHCCEEEE
Confidence 999999888543 5677 6899999865 888887762 2 69999976 789999999999999
Q ss_pred ccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhcc---CCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Q 001292 507 GSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAE---GAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGR 583 (1106)
Q Consensus 507 PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~D---g~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Ar 583 (1106)
||..| +||++++||||||+|||+++.+|+.|++.+ +.+|++++++|+++|+++|.++++|+++ +++|+++++
T Consensus 338 pS~~E--~~g~~vlEAmA~G~PVI~s~~gg~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~---~~~~~~~a~ 412 (465)
T PLN02871 338 PSESE--TLGFVVLEAMASGVPVVAARAGGIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLADPEL---RERMGAAAR 412 (465)
T ss_pred CCccc--ccCcHHHHHHHcCCCEEEcCCCCcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhCHHH---HHHHHHHHH
Confidence 99886 999999999999999999999999999998 9999999999999999999999999987 688999999
Q ss_pred HHHHHhcHHHHHHHHHH-HHHHHhcC
Q 001292 584 LHAKNMLALDCVTRYAR-ILENVLNF 608 (1106)
Q Consensus 584 e~ake~fsee~v~~Y~e-LyeslLk~ 608 (1106)
+.++++.|+..+.++.+ .|+.++..
T Consensus 413 ~~~~~fsw~~~a~~l~~~~Y~~~~~~ 438 (465)
T PLN02871 413 EEVEKWDWRAATRKLRNEQYSAAIWF 438 (465)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 99988888888878876 68776654
No 4
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=100.00 E-value=7.8e-32 Score=312.28 Aligned_cols=384 Identities=16% Similarity=0.157 Sum_probs=271.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCcCCCCCccccccccceeeee-cccC-CCCCccccccCCCCCCCCCCEEEE
Q 001292 150 YLLYFMIFLAVFAFAMASMVLQNSIASVFGAERGRPIREELRFGSRLKFV-PDQV-GFGNGLDGLRSTPRFGVRPPRIGL 227 (1106)
Q Consensus 150 ~~~y~ll~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ger~gf~-~~~~-~~~~~~~ha~Sv~r~g~r~~RIal 227 (1106)
.++|.+++.++.|+ +++++++|+++.+.++++ +.||+|+. .... ..+.+|.||+|+
T Consensus 3 ~~~y~~~~~~~~p~-~~~~~~~~~~~~~~~~~~---------~~~r~~~~~~~~~~~~~~iW~Ha~s~------------ 60 (425)
T PRK05749 3 RLLYTALLYLALPL-ILLRLLLRSRKAPKYRKR---------WGERFGFRKPNPPPKGPLIWFHAVSV------------ 60 (425)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHhccCccchhh---------hccccCCCCCCCCCCCCeEEEEeCCH------------
Confidence 36899999999999 888888888777777655 78999983 2222 234589999999
Q ss_pred EeCCCCCChhHHHHHHHHHHHHHCC--CEEEEEEcCCCCchHHHHHH--------------hHHHHHhhccCccEEEEcc
Q 001292 228 ILGNMAKDSRSLLLITVVKNLQKLG--YVFKIYAVRSGNSHSLWEQI--------------AGQISILGQEQYSLIDWSI 291 (1106)
Q Consensus 228 Vlg~L~~gGesl~vv~LakaLqe~G--yeVtV~t~~dg~~~~i~r~l--------------g~lvkiIr~~~pDiIh~~~ 291 (1106)
|+..++.+|++.|++.+ ++|.+++.++++....-+.. ..+.++++..+||+++++.
T Consensus 61 --------Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~~~~~~~~~~P~d~~~~~~~~l~~~~Pd~v~~~~ 132 (425)
T PRK05749 61 --------GETRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQALFGDDVEHRYLPYDLPGAVRRFLRFWRPKLVIIME 132 (425)
T ss_pred --------HHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHhcCCCceEEEecCCcHHHHHHHHHhhCCCEEEEEe
Confidence 99999999999999985 56666665554433221111 1145677888999998864
Q ss_pred ccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecCCChhhh--hc
Q 001292 292 FDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPML--YS 369 (1106)
Q Consensus 292 ~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~~~~~~--~~ 369 (1106)
... +...+.... ..++|++++.| .+..+... ...++....+..++.+|.|+++|...... ..
T Consensus 133 ~~~-~~~~l~~~~---------~~~ip~vl~~~--~~~~~s~~----~~~~~~~~~r~~~~~~d~ii~~S~~~~~~l~~~ 196 (425)
T PRK05749 133 TEL-WPNLIAELK---------RRGIPLVLANA--RLSERSFK----RYQKFKRFYRLLFKNIDLVLAQSEEDAERFLAL 196 (425)
T ss_pred cch-hHHHHHHHH---------HCCCCEEEEec--cCChhhHH----HHHHHHHHHHHHHHhCCEEEECCHHHHHHHHHc
Confidence 432 222222211 26899987633 22222211 00112222345678899999999877765 34
Q ss_pred CCCCCCEEEeCCCCCCcccccccCcc-hhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhc
Q 001292 370 VLDAGNFFVIPGSPADVWAVEAYSKS-HEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRN 448 (1106)
Q Consensus 370 gi~~~KI~VIpN~GVDl~~~e~F~ps-~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk 448 (1106)
+++++ +.+++|.++|. ...... .....+|..++ +++++|+++| .+ .|+.+.+++|++.+.++
T Consensus 197 g~~~~-i~vi~n~~~d~---~~~~~~~~~~~~~r~~~~--~~~~vil~~~----~~--~~~~~~ll~A~~~l~~~----- 259 (425)
T PRK05749 197 GAKNE-VTVTGNLKFDI---EVPPELAARAATLRRQLA--PNRPVWIAAS----TH--EGEEELVLDAHRALLKQ----- 259 (425)
T ss_pred CCCCC-cEecccccccC---CCChhhHHHHHHHHHHhc--CCCcEEEEeC----CC--chHHHHHHHHHHHHHHh-----
Confidence 56666 88899866664 211111 22345677776 4667888887 33 35789999999877643
Q ss_pred cCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCC------------CCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCc
Q 001292 449 SVEGSFKFVFLCGNSTDGYNDALQEVASRLGLL------------EHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFP 516 (1106)
Q Consensus 449 ~~~PdikfLIIVG~GperY~eeLkeLaeklGL~------------d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFG 516 (1106)
.|+++ |+|+|+|+++ .++++++++++|+. +++|.+.+..+++..+|+.||+++++++.. |++|
T Consensus 260 --~~~~~-liivG~g~~r-~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~~-e~~g 334 (425)
T PRK05749 260 --FPNLL-LILVPRHPER-FKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSLV-KRGG 334 (425)
T ss_pred --CCCcE-EEEcCCChhh-HHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCcC-CCCC
Confidence 27887 7899999975 57899999998884 125677777889999999999988765553 4899
Q ss_pred HHHHHHHHhCCCEEecCC-CCchhhhcc-CCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHH
Q 001292 517 SLIVRAMTFGIPVITPDF-PIIKEYVAE-GAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDC 594 (1106)
Q Consensus 517 lvLLEAMA~G~PVIASD~-gGI~EiV~D-g~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fsee~ 594 (1106)
++++||||||+|||+++. ++..+++.. ..+|++++++|+++|+++|..+++|++. +.+|+++|++++.++. ..
T Consensus 335 ~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~g~~~~~~d~~~La~~l~~ll~~~~~---~~~m~~~a~~~~~~~~--~~ 409 (425)
T PRK05749 335 HNPLEPAAFGVPVISGPHTFNFKEIFERLLQAGAAIQVEDAEDLAKAVTYLLTDPDA---RQAYGEAGVAFLKQNQ--GA 409 (425)
T ss_pred CCHHHHHHhCCCEEECCCccCHHHHHHHHHHCCCeEEECCHHHHHHHHHHHhcCHHH---HHHHHHHHHHHHHhCc--cH
Confidence 999999999999999754 455555443 2468888889999999999999999987 6899999999998763 55
Q ss_pred HHHHHHHHHHHh
Q 001292 595 VTRYARILENVL 606 (1106)
Q Consensus 595 v~~Y~eLyeslL 606 (1106)
.+++.+++...+
T Consensus 410 ~~~~~~~l~~~l 421 (425)
T PRK05749 410 LQRTLQLLEPYL 421 (425)
T ss_pred HHHHHHHHHHhc
Confidence 567777766544
No 5
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.5e-31 Score=299.09 Aligned_cols=344 Identities=15% Similarity=0.152 Sum_probs=259.8
Q ss_pred CEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCc-h-----------------------HHHHHHhHHHHH
Q 001292 223 PRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNS-H-----------------------SLWEQIAGQISI 278 (1106)
Q Consensus 223 ~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~-~-----------------------~i~r~lg~lvki 278 (1106)
+||++++.. ..||.+..+..+++.|.+.||+|+|++...... . ........+.+.
T Consensus 1 mki~~~~~p-~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (371)
T cd04962 1 MKIGIVCYP-TYGGSGVVATELGKALARRGHEVHFITSSRPFRLDEYSPNIFFHEVEVPQYPLFQYPPYDLALASKIAEV 79 (371)
T ss_pred CceeEEEEe-CCCCccchHHHHHHHHHhcCCceEEEecCCCcchhhhccCeEEEEecccccchhhcchhHHHHHHHHHHH
Confidence 478888743 458999999999999999999999998743110 0 000112235566
Q ss_pred hhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEE
Q 001292 279 LGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIV 358 (1106)
Q Consensus 279 Ir~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VI 358 (1106)
++..++|+||++.+....+..+..+... ...++|+|+++|+......... ..+.......++.+|.++
T Consensus 80 i~~~~~divh~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~h~~~~~~~~~~------~~~~~~~~~~~~~~d~ii 147 (371)
T cd04962 80 AKRYKLDLLHVHYAVPHAVAAYLAREIL------GKKDLPVVTTLHGTDITLVGQD------PSFQPATRFSIEKSDGVT 147 (371)
T ss_pred HhcCCccEEeecccCCccHHHHHHHHhc------CcCCCcEEEEEcCCcccccccc------ccchHHHHHHHhhCCEEE
Confidence 7778999999986554333323222211 0137999999998532210000 000111224567899999
Q ss_pred ecCCChhhhh--cCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHH
Q 001292 359 FPDYTLPMLY--SVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHD 436 (1106)
Q Consensus 359 a~S~~~~~~~--~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA 436 (1106)
+.+....... ......++.+||| |+|. ..|.+.. ....+.++++.++.++++++|++.+ .|+++.+++|
T Consensus 148 ~~s~~~~~~~~~~~~~~~~i~vi~n-~~~~---~~~~~~~-~~~~~~~~~~~~~~~~il~~g~l~~----~K~~~~li~a 218 (371)
T cd04962 148 AVSESLRQETYELFDITKEIEVIPN-FVDE---DRFRPKP-DEALKRRLGAPEGEKVLIHISNFRP----VKRIDDVIRI 218 (371)
T ss_pred EcCHHHHHHHHHhcCCcCCEEEecC-CcCH---hhcCCCc-hHHHHHhcCCCCCCeEEEEeccccc----ccCHHHHHHH
Confidence 9987665541 2224568999998 6886 4454432 3445677888888999999999887 8999999999
Q ss_pred HHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCc
Q 001292 437 VGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFP 516 (1106)
Q Consensus 437 ~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFG 516 (1106)
+..+.++ ++++ ++++|.+++. +.++++++++++.+ +|.|.|+.+++..+|+.||++++||..| +||
T Consensus 219 ~~~l~~~--------~~~~-l~i~G~g~~~--~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~d~~v~ps~~E--~~~ 284 (371)
T cd04962 219 FAKVRKE--------VPAR-LLLVGDGPER--SPAERLARELGLQD-DVLFLGKQDHVEELLSIADLFLLPSEKE--SFG 284 (371)
T ss_pred HHHHHhc--------CCce-EEEEcCCcCH--HHHHHHHHHcCCCc-eEEEecCcccHHHHHHhcCEEEeCCCcC--CCc
Confidence 9776531 3466 6889999865 88999999999987 8999999999999999999999999876 999
Q ss_pred HHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcH-HHHH
Q 001292 517 SLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLA-LDCV 595 (1106)
Q Consensus 517 lvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fs-ee~v 595 (1106)
++++|||++|+|||+++.++..|++.++.+|++++++|+++++++|..+++|++. +.+|++++++.+.+.|+ +..+
T Consensus 285 ~~~~EAma~g~PvI~s~~~~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~~~~~---~~~~~~~~~~~~~~~fs~~~~~ 361 (371)
T cd04962 285 LAALEAMACGVPVVASNAGGIPEVVKHGETGFLVDVGDVEAMAEYALSLLEDDEL---WQEFSRAARNRAAERFDSERIV 361 (371)
T ss_pred cHHHHHHHcCCCEEEeCCCCchhhhcCCCceEEcCCCCHHHHHHHHHHHHhCHHH---HHHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987 68899999999665555 5666
Q ss_pred HHHHHHHHHH
Q 001292 596 TRYARILENV 605 (1106)
Q Consensus 596 ~~Y~eLyesl 605 (1106)
.+|.++|+++
T Consensus 362 ~~~~~~y~~~ 371 (371)
T cd04962 362 PQYEALYRRL 371 (371)
T ss_pred HHHHHHHHhC
Confidence 6999999863
No 6
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=1.3e-31 Score=306.35 Aligned_cols=339 Identities=18% Similarity=0.185 Sum_probs=255.5
Q ss_pred CChhHHHHHHHHHHHHHCCCEEEEEEcCCCC----ch----------------------HHHHH----HhHHH-HHhhc-
Q 001292 234 KDSRSLLLITVVKNLQKLGYVFKIYAVRSGN----SH----------------------SLWEQ----IAGQI-SILGQ- 281 (1106)
Q Consensus 234 ~gGesl~vv~LakaLqe~GyeVtV~t~~dg~----~~----------------------~i~r~----lg~lv-kiIr~- 281 (1106)
.||.+.++..|+++|.++||+|+|+|...+. .. ..... ..... .+++.
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPPVVEVAPGVRVRNVVAGPYEGLDKEDLPTQLCAFTGGVLRAEARHE 98 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCccccCCCcEEEEecCCCcccCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5899999999999999999999999863210 00 00000 00011 22332
Q ss_pred -cCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcc-cccc-h-h-hhhhhHHhHHHHHHHHhccccE
Q 001292 282 -EQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSL-ANRL-P-V-YVERGFQNLLSYWKSVFSRVNV 356 (1106)
Q Consensus 282 -~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~L-s~r~-~-~-Y~~~gleklis~~~~~l~~AD~ 356 (1106)
.++|+||+|.+...++..+..+. .++|+|+++|+... .... . . .+.....++. ....++.+|.
T Consensus 99 ~~~~Diih~h~~~~~~~~~~~~~~----------~~~p~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~--e~~~~~~~d~ 166 (405)
T TIGR03449 99 PGYYDLIHSHYWLSGQVGWLLRDR----------WGVPLVHTAHTLAAVKNAALADGDTPEPEARRIG--EQQLVDNADR 166 (405)
T ss_pred CCCCCeEEechHHHHHHHHHHHHh----------cCCCEEEeccchHHHHHHhccCCCCCchHHHHHH--HHHHHHhcCe
Confidence 47999999987666655554432 57899999998421 1100 0 0 0000001111 1245789999
Q ss_pred EEecCCChhhh---hcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHH
Q 001292 357 IVFPDYTLPML---YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVA 433 (1106)
Q Consensus 357 VIa~S~~~~~~---~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlL 433 (1106)
+++.+...... ..+.+.+++.+||| |+|. +.|.+. .....+.++++++++++|+++|++.+ .||++.+
T Consensus 167 vi~~s~~~~~~~~~~~~~~~~ki~vi~n-gvd~---~~~~~~-~~~~~~~~~~~~~~~~~i~~~G~l~~----~K~~~~l 237 (405)
T TIGR03449 167 LIANTDEEARDLVRHYDADPDRIDVVAP-GADL---ERFRPG-DRATERARLGLPLDTKVVAFVGRIQP----LKAPDVL 237 (405)
T ss_pred EEECCHHHHHHHHHHcCCChhhEEEECC-CcCH---HHcCCC-cHHHHHHhcCCCCCCcEEEEecCCCc----ccCHHHH
Confidence 99998654433 34566778999998 8997 556544 24456788898888899999999988 8999999
Q ss_pred HHHHHHhHHHHHhhccCCCC--eEEEEEEcCCC--C-ccHHHHHHHHHHcCCCCCcEEEcCCh--hhHHHHHHHcCeEEE
Q 001292 434 MHDVGPLLIKYARRNSVEGS--FKFVFLCGNST--D-GYNDALQEVASRLGLLEHSVRHYGFN--GDVNGVLLMADIVLY 506 (1106)
Q Consensus 434 LeA~k~Ll~k~aklk~~~Pd--ikfLIIVG~Gp--e-rY~eeLkeLaeklGL~d~rV~flG~~--eDL~~LyaaADVfV~ 506 (1106)
++|+..+.++. |+ ++ |+++|... . .+.+.++++++++++.+ +|.|+|.. +++..+|+.||++++
T Consensus 238 i~a~~~l~~~~-------~~~~~~-l~ivG~~~~~g~~~~~~l~~~~~~~~l~~-~v~~~g~~~~~~~~~~l~~ad~~v~ 308 (405)
T TIGR03449 238 LRAVAELLDRD-------PDRNLR-VIVVGGPSGSGLATPDALIELAAELGIAD-RVRFLPPRPPEELVHVYRAADVVAV 308 (405)
T ss_pred HHHHHHHHhhC-------CCcceE-EEEEeCCCCCcchHHHHHHHHHHHcCCCc-eEEECCCCCHHHHHHHHHhCCEEEE
Confidence 99998886432 44 77 46666421 1 23588999999999987 99999954 789999999999999
Q ss_pred ccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Q 001292 507 GSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHA 586 (1106)
Q Consensus 507 PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~a 586 (1106)
||..| +||++++||||+|+|||+++.+++.|++.++.+|++++++|+++++++|.+++++++. +.+|++++++.+
T Consensus 309 ps~~E--~~g~~~lEAma~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~~~~---~~~~~~~~~~~~ 383 (405)
T TIGR03449 309 PSYNE--SFGLVAMEAQACGTPVVAARVGGLPVAVADGETGLLVDGHDPADWADALARLLDDPRT---RIRMGAAAVEHA 383 (405)
T ss_pred CCCCC--CcChHHHHHHHcCCCEEEecCCCcHhhhccCCceEECCCCCHHHHHHHHHHHHhCHHH---HHHHHHHHHHHH
Confidence 99876 9999999999999999999999999999999999999999999999999999999886 688999999999
Q ss_pred HHhcHHHHHHHHHHHHHHHhc
Q 001292 587 KNMLALDCVTRYARILENVLN 607 (1106)
Q Consensus 587 ke~fsee~v~~Y~eLyeslLk 607 (1106)
+++.|+..+.+|.++|.+++.
T Consensus 384 ~~fsw~~~~~~~~~~y~~~~~ 404 (405)
T TIGR03449 384 AGFSWAATADGLLSSYRDALA 404 (405)
T ss_pred HhCCHHHHHHHHHHHHHHHhh
Confidence 887888888899999998763
No 7
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=3.7e-31 Score=306.63 Aligned_cols=337 Identities=15% Similarity=0.158 Sum_probs=253.2
Q ss_pred CEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCC---ch---H---H---------------HHHH------
Q 001292 223 PRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGN---SH---S---L---------------WEQI------ 272 (1106)
Q Consensus 223 ~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~---~~---~---i---------------~r~l------ 272 (1106)
+||+++++.+..-.+ .++..-+.+|.++|++|.++++.+.. .. . . ....
T Consensus 1 m~ia~~~~~~P~~se-tFi~~ei~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (406)
T PRK15427 1 MKVGFFLLKFPLSSE-TFVLNQITAFIDMGFEVEIVALQKGDTQNTHAAWTKYNLAAKTRWLQDEPQGKVAKLRHRASQT 79 (406)
T ss_pred CeEEEEeccCCccch-hhHHHHHHHHHHcCceEEEEEccCCCccccccchhhhccccceeecCcCccchHHHHhhhhhhH
Confidence 489999999886554 46678889999999999999974321 00 0 0 0000
Q ss_pred ------------------h----------HHHHHhhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEc
Q 001292 273 ------------------A----------GQISILGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQ 324 (1106)
Q Consensus 273 ------------------g----------~lvkiIr~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIH 324 (1106)
+ .+...++..++|+||.|............... ..+.|+++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diihaH~~~~~~~~~~~~~~~--------~~~~~~~~t~H 151 (406)
T PRK15427 80 LRGIHRKNTWKALNLKRYGAESRNLILSAICAQVATPFVADVFIAHFGPAGVTAAKLRELG--------VLRGKIATIFH 151 (406)
T ss_pred hhhhcccchhccCChhhhhhhhHHHHHHHHHhhhhccCCCCEEEEcCChHHHHHHHHHHhC--------CCCCCeEEEEc
Confidence 0 01223345679999999876554444333211 13456788999
Q ss_pred CCcccccchhhhhhhHHhHHHHHHHHhccccEEEecCCChhhh--hcCCCCCCEEEeCCCCCCcccccccCcchhHHHHH
Q 001292 325 EDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLR 402 (1106)
Q Consensus 325 na~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~~~~~~--~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR 402 (1106)
+......... ......+...++++|.+++.|...... ..+.+++++.+||| |+|. +.|.+....
T Consensus 152 g~d~~~~~~~------~~~~~~~~~~~~~ad~vv~~S~~~~~~l~~~g~~~~ki~vi~n-Gvd~---~~f~~~~~~---- 217 (406)
T PRK15427 152 GIDISSREVL------NHYTPEYQQLFRRGDLMLPISDLWAGRLQKMGCPPEKIAVSRM-GVDM---TRFSPRPVK---- 217 (406)
T ss_pred ccccccchhh------hhhhHHHHHHHHhCCEEEECCHHHHHHHHHcCCCHHHEEEcCC-CCCH---HHcCCCccc----
Confidence 8643321111 111112445678999999998755444 34677789999998 8998 556442110
Q ss_pred HHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCC
Q 001292 403 KENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLE 482 (1106)
Q Consensus 403 ~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d 482 (1106)
...+.+.|+++||+.+ .||++.+++|++.|.+ .+++++ ++|+|+|+.. ++++++++++|+.+
T Consensus 218 ----~~~~~~~il~vGrl~~----~Kg~~~ll~a~~~l~~-------~~~~~~-l~ivG~G~~~--~~l~~~~~~~~l~~ 279 (406)
T PRK15427 218 ----APATPLEIISVARLTE----KKGLHVAIEACRQLKE-------QGVAFR-YRILGIGPWE--RRLRTLIEQYQLED 279 (406)
T ss_pred ----cCCCCeEEEEEeCcch----hcCHHHHHHHHHHHHh-------hCCCEE-EEEEECchhH--HHHHHHHHHcCCCC
Confidence 1235678999999988 8999999999987753 237888 6889999965 89999999999987
Q ss_pred CcEEEcCCh--hhHHHHHHHcCeEEEccCCC----CCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHH
Q 001292 483 HSVRHYGFN--GDVNGVLLMADIVLYGSSQV----EQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPE 556 (1106)
Q Consensus 483 ~rV~flG~~--eDL~~LyaaADVfV~PS~~E----eEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~e 556 (1106)
+|.|+|.. +++.++|+.||++|+||..+ -||||++++||||||+|||+++.+|++|++.++.+|++++++|++
T Consensus 280 -~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~~E~v~~~~~G~lv~~~d~~ 358 (406)
T PRK15427 280 -VVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIPELVEADKSGWLVPENDAQ 358 (406)
T ss_pred -eEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCchhhhcCCCceEEeCCCCHH
Confidence 99999954 78999999999999999741 149999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CcccHHHHHHHHHHHHHHHHHhcHHHH-HHHHHHHHHH
Q 001292 557 GLSRAFSLFIS-NGKLSKFARTVASAGRLHAKNMLALDC-VTRYARILEN 604 (1106)
Q Consensus 557 eLAeAI~~LLs-DpelRk~r~~mGe~Are~ake~fsee~-v~~Y~eLyes 604 (1106)
+|+++|.++++ |+++ +.+|+++|++.+.+.|+.+. +.++.++|++
T Consensus 359 ~la~ai~~l~~~d~~~---~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 359 ALAQRLAAFSQLDTDE---LAPVVKRAREKVETDFNQQVINRELASLLQA 405 (406)
T ss_pred HHHHHHHHHHhCCHHH---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 99999999999 9987 68999999999988776554 4599999875
No 8
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=1.4e-30 Score=299.11 Aligned_cols=335 Identities=17% Similarity=0.180 Sum_probs=249.4
Q ss_pred EEEEEeCCCCC--ChhHHHHHHHHHHHHHCCCEEEEEEcCCCCc---h-----------------------HHHHHHhHH
Q 001292 224 RIGLILGNMAK--DSRSLLLITVVKNLQKLGYVFKIYAVRSGNS---H-----------------------SLWEQIAGQ 275 (1106)
Q Consensus 224 RIalVlg~L~~--gGesl~vv~LakaLqe~GyeVtV~t~~dg~~---~-----------------------~i~r~lg~l 275 (1106)
||++|.+...+ ||.+..+..+++.|.++||+|+|++...+.. . .....+..+
T Consensus 1 kI~~v~~~~~p~~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~v~~~p~~~~~~~~~~~~~~~~~~~l 80 (398)
T cd03796 1 RICMVSDFFYPNLGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIRYLTNGLKVYYLPFVVFYNQSTLPTFFGTFPLL 80 (398)
T ss_pred CeeEEeeccccccccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCcccccCceeEEEecceeccCCccccchhhhHHHH
Confidence 57888776654 8999999999999999999999998742210 0 001111224
Q ss_pred HHHhhccCccEEEEccccHHHH--HHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhcc
Q 001292 276 ISILGQEQYSLIDWSIFDGIIA--DSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSR 353 (1106)
Q Consensus 276 vkiIr~~~pDiIh~~~~~~i~v--~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~ 353 (1106)
.+.+...++|+||+|.....+. ..+..+ ..++|+|++.|+............ .+ .....++.
T Consensus 81 ~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~----------~~~~~~v~t~h~~~~~~~~~~~~~---~~---~~~~~~~~ 144 (398)
T cd03796 81 RNILIRERITIVHGHQAFSALAHEALLHAR----------TMGLKTVFTDHSLFGFADASSIHT---NK---LLRFSLAD 144 (398)
T ss_pred HHHHHhcCCCEEEECCCCchHHHHHHHHhh----------hcCCcEEEEecccccccchhhHHh---hH---HHHHhhcc
Confidence 4566678999999998654432 222222 257899999998421100000000 11 11234678
Q ss_pred ccEEEecCCChhhh---hcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCH
Q 001292 354 VNVIVFPDYTLPML---YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDY 430 (1106)
Q Consensus 354 AD~VIa~S~~~~~~---~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~ 430 (1106)
+|.+++.+....+. ..+++.+++.+||| |+|. +.|.+.... ..++.++++++||+.+ .||+
T Consensus 145 ~d~ii~~s~~~~~~~~~~~~~~~~k~~vi~n-gvd~---~~f~~~~~~--------~~~~~~~i~~~grl~~----~Kg~ 208 (398)
T cd03796 145 VDHVICVSHTSKENTVLRASLDPERVSVIPN-AVDS---SDFTPDPSK--------RDNDKITIVVISRLVY----RKGI 208 (398)
T ss_pred CCEEEEecHhHhhHHHHHhCCChhhEEEEcC-ccCH---HHcCCCccc--------CCCCceEEEEEeccch----hcCH
Confidence 99999998765432 44667788999998 7997 556543211 2357789999999988 8999
Q ss_pred HHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCC--hhhHHHHHHHcCeEEEcc
Q 001292 431 AVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGF--NGDVNGVLLMADIVLYGS 508 (1106)
Q Consensus 431 dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~--~eDL~~LyaaADVfV~PS 508 (1106)
+.+++|+..+.++ .|+++ |+++|+++.. +.++++++++++.+ +|.|+|. .+++..+|+.||++++||
T Consensus 209 ~~li~a~~~l~~~-------~~~~~-l~i~G~g~~~--~~l~~~~~~~~l~~-~v~~~G~~~~~~~~~~l~~ad~~v~pS 277 (398)
T cd03796 209 DLLVGIIPEICKK-------HPNVR-FIIGGDGPKR--ILLEEMREKYNLQD-RVELLGAVPHERVRDVLVQGHIFLNTS 277 (398)
T ss_pred HHHHHHHHHHHhh-------CCCEE-EEEEeCCchH--HHHHHHHHHhCCCC-eEEEeCCCCHHHHHHHHHhCCEEEeCC
Confidence 9999999877542 37888 6889999865 88999999999997 9999995 478999999999999999
Q ss_pred CCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Q 001292 509 SQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKN 588 (1106)
Q Consensus 509 ~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake 588 (1106)
..| +||++++||||||+|||+++.++++|++.++ .+++++ .|+++|+++|.++++++.. ...++.++++.+.+
T Consensus 278 ~~E--~~g~~~~EAma~G~PVI~s~~gg~~e~i~~~-~~~~~~-~~~~~l~~~l~~~l~~~~~---~~~~~~~~~~~~~~ 350 (398)
T cd03796 278 LTE--AFCIAIVEAASCGLLVVSTRVGGIPEVLPPD-MILLAE-PDVESIVRKLEEAISILRT---GKHDPWSFHNRVKK 350 (398)
T ss_pred hhh--ccCHHHHHHHHcCCCEEECCCCCchhheeCC-ceeecC-CCHHHHHHHHHHHHhChhh---hhhHHHHHHHHHHh
Confidence 876 9999999999999999999999999999775 344444 5899999999999998765 34567788887766
Q ss_pred hcH-HHHHHHHHHHHHHHhcC
Q 001292 589 MLA-LDCVTRYARILENVLNF 608 (1106)
Q Consensus 589 ~fs-ee~v~~Y~eLyeslLk~ 608 (1106)
.|+ +..+.+|.++|++++..
T Consensus 351 ~fs~~~~~~~~~~~y~~l~~~ 371 (398)
T cd03796 351 MYSWEDVAKRTEKVYDRILQT 371 (398)
T ss_pred hCCHHHHHHHHHHHHHHHhcC
Confidence 665 55566999999998874
No 9
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=100.00 E-value=2.7e-30 Score=281.13 Aligned_cols=339 Identities=19% Similarity=0.296 Sum_probs=263.6
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCC-chHHH-------------------HHHhHHHHHhhccC
Q 001292 224 RIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGN-SHSLW-------------------EQIAGQISILGQEQ 283 (1106)
Q Consensus 224 RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~-~~~i~-------------------r~lg~lvkiIr~~~ 283 (1106)
||+++++.+..||.+..+..+++.|.+.|++|.+++..... ..... .....+.+.++..+
T Consensus 1 ~i~~i~~~~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (365)
T cd03807 1 KVLHVITGLDVGGAERMLVRLLKGLDRDRFEHVVISLTDRGELGEELEEAGVPVYCLGKRPGRPDPGALLRLYKLIRRLR 80 (365)
T ss_pred CeEEEEeeccCccHHHHHHHHHHHhhhccceEEEEecCcchhhhHHHHhcCCeEEEEecccccccHHHHHHHHHHHHhhC
Confidence 68999999999999999999999999999999999875322 11111 11122456677789
Q ss_pred ccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHH-HHHhccccEEEecCC
Q 001292 284 YSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYW-KSVFSRVNVIVFPDY 362 (1106)
Q Consensus 284 pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~-~~~l~~AD~VIa~S~ 362 (1106)
+|+||.+.+...++..+..+.. .++|+|+++|+........ . ....... ......++.+++.+.
T Consensus 81 ~div~~~~~~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~i~~s~ 145 (365)
T cd03807 81 PDVVHTWMYHADLYGGLAARLA---------GVPPVIWGIRHSDLDLGKK---S---TRLVARLRRLLSSFIPLIVANSA 145 (365)
T ss_pred CCEEEeccccccHHHHHHHHhc---------CCCcEEEEecCCcccccch---h---HhHHHHHHHHhccccCeEEeccH
Confidence 9999998776666555555321 5789999999964332100 0 1111111 234567788788876
Q ss_pred Chhhh--hcCCCCCCEEEeCCCCCCcccccccCcc-hhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHHH
Q 001292 363 TLPML--YSVLDAGNFFVIPGSPADVWAVEAYSKS-HEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGP 439 (1106)
Q Consensus 363 ~~~~~--~~gi~~~KI~VIpN~GVDl~~~e~F~ps-~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~ 439 (1106)
..... ..+++..++.++|| |+|. ..+.+. ......+++++++++.++++++|++.. .|+.+.+++|+..
T Consensus 146 ~~~~~~~~~~~~~~~~~vi~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~----~K~~~~li~a~~~ 217 (365)
T cd03807 146 AAAEYHQAIGYPPKKIVVIPN-GVDT---ERFSPDLDARARLREELGLPEDTFLIGIVARLHP----QKDHATLLRAAAL 217 (365)
T ss_pred HHHHHHHHcCCChhheeEeCC-CcCH---HhcCCcccchHHHHHhcCCCCCCeEEEEecccch----hcCHHHHHHHHHH
Confidence 65554 33677788999998 7987 445443 234456678899889999999999887 8899999999988
Q ss_pred hHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHH-HcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHH
Q 001292 440 LLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVAS-RLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSL 518 (1106)
Q Consensus 440 Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLae-klGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlv 518 (1106)
+.++ .++++ ++++|.++.. ..++.... ++++.+ +|.+.|..+++..+|+.||++++||..| ++|++
T Consensus 218 l~~~-------~~~~~-l~i~G~~~~~--~~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~adi~v~ps~~e--~~~~~ 284 (365)
T cd03807 218 LLKK-------FPNAR-LLLVGDGPDR--ANLELLALKELGLED-KVILLGERSDVPALLNALDVFVLSSLSE--GFPNV 284 (365)
T ss_pred HHHh-------CCCeE-EEEecCCcch--hHHHHHHHHhcCCCc-eEEEccccccHHHHHHhCCEEEeCCccc--cCCcH
Confidence 7643 37888 6889998875 66777776 888887 9999999999999999999999999986 99999
Q ss_pred HHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcH-HHHHHH
Q 001292 519 IVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLA-LDCVTR 597 (1106)
Q Consensus 519 LLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fs-ee~v~~ 597 (1106)
++|||+||+|||+++.++..+++.+ +|++++++|+++++++|..++++++. +.++++++++.+.++|+ +..+.+
T Consensus 285 ~~Ea~a~g~PvI~~~~~~~~e~~~~--~g~~~~~~~~~~l~~~i~~l~~~~~~---~~~~~~~~~~~~~~~~s~~~~~~~ 359 (365)
T cd03807 285 LLEAMACGLPVVATDVGDNAELVGD--TGFLVPPGDPEALAEAIEALLADPAL---RQALGEAARERIEENFSIEAMVEA 359 (365)
T ss_pred HHHHHhcCCCEEEcCCCChHHHhhc--CCEEeCCCCHHHHHHHHHHHHhChHH---HHHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999999999999999976 89999999999999999999999876 68899999999988766 555569
Q ss_pred HHHHHH
Q 001292 598 YARILE 603 (1106)
Q Consensus 598 Y~eLye 603 (1106)
|.++|+
T Consensus 360 ~~~~y~ 365 (365)
T cd03807 360 YEELYR 365 (365)
T ss_pred HHHHhC
Confidence 998874
No 10
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=1.8e-30 Score=303.23 Aligned_cols=341 Identities=13% Similarity=0.118 Sum_probs=244.0
Q ss_pred CCCChhHHHHHHHHHHHHHCCC--EEEEEEcCC-C-----Cc----h----------------------HHHHH----Hh
Q 001292 232 MAKDSRSLLLITVVKNLQKLGY--VFKIYAVRS-G-----NS----H----------------------SLWEQ----IA 273 (1106)
Q Consensus 232 L~~gGesl~vv~LakaLqe~Gy--eVtV~t~~d-g-----~~----~----------------------~i~r~----lg 273 (1106)
-..||.+..+.+|+++|.++|+ +|+|+|... + .. . ..+.. ..
T Consensus 23 p~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~~~~~~~~~~~~~~~~~~~~ 102 (439)
T TIGR02472 23 ADTGGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFGPRRYLRKELLWPYLDELAD 102 (439)
T ss_pred CCCCCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCCCCCCcChhhhhhhHHHHHH
Confidence 3458999999999999999997 999998421 0 00 0 00000 01
Q ss_pred HHHHHhhcc--CccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccc--hh-----hhhh---hHH
Q 001292 274 GQISILGQE--QYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRL--PV-----YVER---GFQ 341 (1106)
Q Consensus 274 ~lvkiIr~~--~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~--~~-----Y~~~---gle 341 (1106)
.+.++++.. +||+||+|.+...++..+..+. .++|+|+|.|+.....+. .. .... ...
T Consensus 103 ~l~~~~~~~~~~~DvIH~h~~~~~~~~~~~~~~----------~~~p~V~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (439)
T TIGR02472 103 NLLQHLRQQGHLPDLIHAHYADAGYVGARLSRL----------LGVPLIFTGHSLGREKRRRLLAAGLKPQQIEKQYNIS 172 (439)
T ss_pred HHHHHHHHcCCCCCEEEEcchhHHHHHHHHHHH----------hCCCEEEecccccchhhhhcccCCCChhhhhhhcchH
Confidence 234455533 6999999987766666655542 578999999974221110 00 0000 000
Q ss_pred hHHHHHHHHhccccEEEecCCChhhh----hcCCCCCCEEEeCCCCCCcccccccCcch---hHHH---HHHHcCCCCCc
Q 001292 342 NLLSYWKSVFSRVNVIVFPDYTLPML----YSVLDAGNFFVIPGSPADVWAVEAYSKSH---EKYQ---LRKENGFLKDE 411 (1106)
Q Consensus 342 klis~~~~~l~~AD~VIa~S~~~~~~----~~gi~~~KI~VIpN~GVDl~~~e~F~ps~---s~~~---LR~~lGL~~d~ 411 (1106)
..+......++.+|.|++.+...... +.+++++++.+||| |+|+ +.|.+.. .... .+..++..++.
T Consensus 173 ~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~ki~vIpn-Gvd~---~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (439)
T TIGR02472 173 RRIEAEEETLAHASLVITSTHQEIEEQYALYDSYQPERMQVIPP-GVDL---SRFYPPQSSEETSEIDNLLAPFLKDPEK 248 (439)
T ss_pred HHHHHHHHHHHhCCEEEECCHHHHHHHHHhccCCCccceEEECC-CcCh---hhcCCCCccccchhHHHHHHhhccccCC
Confidence 11111234578999999987543221 23677889999998 8998 6665532 1111 22345566678
Q ss_pred EEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCc---------cHHHHHHHHHHcCCCC
Q 001292 412 IVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDG---------YNDALQEVASRLGLLE 482 (1106)
Q Consensus 412 ~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~Gper---------Y~eeLkeLaeklGL~d 482 (1106)
++|+++||+.+ .||++.+++|++.+.. . ...+++ ++++|++++. +.+.+.++++++++.+
T Consensus 249 ~~i~~vGrl~~----~Kg~~~li~A~~~l~~-~----~~~~~l--~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 317 (439)
T TIGR02472 249 PPILAISRPDR----RKNIPSLVEAYGRSPK-L----QEMANL--VLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYG 317 (439)
T ss_pred cEEEEEcCCcc----cCCHHHHHHHHHhChh-h----hhhccE--EEEeCCccccccccHHHHHHHHHHHHHHHHcCCCc
Confidence 89999999988 8999999999976531 1 111333 4567887642 1234566788899997
Q ss_pred CcEEEcCC--hhhHHHHHHHc----CeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHH
Q 001292 483 HSVRHYGF--NGDVNGVLLMA----DIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPE 556 (1106)
Q Consensus 483 ~rV~flG~--~eDL~~LyaaA----DVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~e 556 (1106)
+|.|+|. .+++..+|+.| |++|+||..| +||++++||||||+|||+++.+|++|++.++.+|++++++|++
T Consensus 318 -~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E--~fg~~~lEAma~G~PvV~s~~gg~~eiv~~~~~G~lv~~~d~~ 394 (439)
T TIGR02472 318 -KVAYPKHHRPDDVPELYRLAARSRGIFVNPALTE--PFGLTLLEAAACGLPIVATDDGGPRDIIANCRNGLLVDVLDLE 394 (439)
T ss_pred -eEEecCCCCHHHHHHHHHHHhhcCCEEecccccC--CcccHHHHHHHhCCCEEEeCCCCcHHHhcCCCcEEEeCCCCHH
Confidence 9999994 57899999987 9999999986 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcH-HHHHHHHHHHHH
Q 001292 557 GLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLA-LDCVTRYARILE 603 (1106)
Q Consensus 557 eLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fs-ee~v~~Y~eLye 603 (1106)
+|+++|.++++|++. +++|++++++.+.+.|+ +.++.+|.++++
T Consensus 395 ~la~~i~~ll~~~~~---~~~~~~~a~~~~~~~fsw~~~~~~~~~l~~ 439 (439)
T TIGR02472 395 AIASALEDALSDSSQ---WQLWSRNGIEGVRRHYSWDAHVEKYLRILQ 439 (439)
T ss_pred HHHHHHHHHHhCHHH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 999999999999987 68899999998876665 555669888763
No 11
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=1.8e-30 Score=305.72 Aligned_cols=352 Identities=15% Similarity=0.151 Sum_probs=257.2
Q ss_pred CEEEEEeCCCCC----ChhHHHHHHHHHHHHHCCCEEEEEEcCCCCch--------------------------------
Q 001292 223 PRIGLILGNMAK----DSRSLLLITVVKNLQKLGYVFKIYAVRSGNSH-------------------------------- 266 (1106)
Q Consensus 223 ~RIalVlg~L~~----gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~-------------------------------- 266 (1106)
+||++|+.++.+ ||...++..|.++|+++|++|.|++...+...
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~v 80 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYPAIREKLRDAQVVGRLDLFTVLFGHLEGDGVPVYLI 80 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCcchhhhhcCceEEEEeeeEEEEEEeEEcCCceEEEE
Confidence 589999877544 89999999999999999999999987432110
Q ss_pred ---HH------H-------H--HHh-HHHHHhhc--cCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcC
Q 001292 267 ---SL------W-------E--QIA-GQISILGQ--EQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQE 325 (1106)
Q Consensus 267 ---~i------~-------r--~lg-~lvkiIr~--~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHn 325 (1106)
.. + + .+. .....++. .+||+||+|.+.+.++..+.+... .....++|+|+|+|+
T Consensus 81 ~~~~~~~~~~~y~~~d~~~r~~~f~~~~~~~~~~~~~~pDiiH~h~w~~~~~~~~l~~~~-----~~~~~~~~~v~TiH~ 155 (466)
T PRK00654 81 DAPHLFDRPSGYGYPDNGERFAFFSWAAAEFAEGLDPRPDIVHAHDWHTGLIPALLKEKY-----WRGYPDIKTVFTIHN 155 (466)
T ss_pred eCHHHcCCCCCCCCcChHHHHHHHHHHHHHHHHhcCCCCceEEECCcHHHHHHHHHHHhh-----hccCCCCCEEEEcCC
Confidence 00 0 0 000 12233332 489999999999888777666321 011247899999999
Q ss_pred Ccccccchh------------hhhhhHHh--HHHHHHHHhccccEEEecCCChhhhhc------------CCCCCCEEEe
Q 001292 326 DSLANRLPV------------YVERGFQN--LLSYWKSVFSRVNVIVFPDYTLPMLYS------------VLDAGNFFVI 379 (1106)
Q Consensus 326 a~Ls~r~~~------------Y~~~glek--lis~~~~~l~~AD~VIa~S~~~~~~~~------------gi~~~KI~VI 379 (1106)
......... .....++. .....+..+..+|.|+++|........ ..+..++.+|
T Consensus 156 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI 235 (466)
T PRK00654 156 LAYQGLFPAEILGELGLPAEAFHLEGLEFYGQISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSGI 235 (466)
T ss_pred CcCCCcCCHHHHHHcCCChHHcCchhhhcCCcccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceEe
Confidence 543221110 00000000 011223457899999999876544311 2346789999
Q ss_pred CCCCCCcccccccCcch------------------hHHHHHHHcCCCC-CcEEEEEEcccCccccccCCHHHHHHHHHHh
Q 001292 380 PGSPADVWAVEAYSKSH------------------EKYQLRKENGFLK-DEIVVVVVGSSFFYNELSWDYAVAMHDVGPL 440 (1106)
Q Consensus 380 pN~GVDl~~~e~F~ps~------------------s~~~LR~~lGL~~-d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~L 440 (1106)
+| |+|. +.|.|.. .+..+++++|+++ +.++|+++||+.+ +||++.+++|++.+
T Consensus 236 ~N-Gid~---~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~i~~vGRl~~----~KG~~~li~a~~~l 307 (466)
T PRK00654 236 LN-GIDY---DIWNPETDPLLAANYSADDLEGKAENKRALQERFGLPDDDAPLFAMVSRLTE----QKGLDLVLEALPEL 307 (466)
T ss_pred cC-CCCc---cccCCccCcccccccChhhhhchHHHHHHHHHHhCCCCCCCcEEEEeecccc----ccChHHHHHHHHHH
Confidence 98 8998 5555431 2456788999975 6789999999998 99999999999877
Q ss_pred HHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEE-EcCChhh-HHHHHHHcCeEEEccCCCCCCCcHH
Q 001292 441 LIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVR-HYGFNGD-VNGVLLMADIVLYGSSQVEQGFPSL 518 (1106)
Q Consensus 441 l~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~-flG~~eD-L~~LyaaADVfV~PS~~EeEGFGlv 518 (1106)
.+ .+++ |+|+|.|+..|.+.+++++++++. +|. +.|+.++ +..+|+.||++|+||.+| +||++
T Consensus 308 ~~---------~~~~-lvivG~g~~~~~~~l~~l~~~~~~---~v~~~~g~~~~~~~~~~~~aDv~v~PS~~E--~~gl~ 372 (466)
T PRK00654 308 LE---------QGGQ-LVLLGTGDPELEEAFRALAARYPG---KVGVQIGYDEALAHRIYAGADMFLMPSRFE--PCGLT 372 (466)
T ss_pred Hh---------cCCE-EEEEecCcHHHHHHHHHHHHHCCC---cEEEEEeCCHHHHHHHHhhCCEEEeCCCCC--CchHH
Confidence 53 2566 578898875556889999988763 454 5676644 568999999999999997 99999
Q ss_pred HHHHHHhCCCEEecCCCCchhhhccC------CeEEEEcCCCHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHHHHHh
Q 001292 519 IVRAMTFGIPVITPDFPIIKEYVAEG------AQVIFFQKDNPEGLSRAFSLFIS---NGKLSKFARTVASAGRLHAKNM 589 (1106)
Q Consensus 519 LLEAMA~G~PVIASD~gGI~EiV~Dg------~nG~LV~~~D~eeLAeAI~~LLs---DpelRk~r~~mGe~Are~ake~ 589 (1106)
++|||+||+|||++++||+.|+|.++ .+|+++++.|+++|+++|.++++ +++. ..+|+.++.+ .++
T Consensus 373 ~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~~~~~~~---~~~~~~~~~~--~~f 447 (466)
T PRK00654 373 QLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALELYRQPPL---WRALQRQAMA--QDF 447 (466)
T ss_pred HHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHhcCHHH---HHHHHHHHhc--cCC
Confidence 99999999999999999999999887 89999999999999999999887 4544 5677777753 456
Q ss_pred cHHHHHHHHHHHHHHHhc
Q 001292 590 LALDCVTRYARILENVLN 607 (1106)
Q Consensus 590 fsee~v~~Y~eLyeslLk 607 (1106)
.|+.++++|.++|+++++
T Consensus 448 sw~~~a~~~~~lY~~~~~ 465 (466)
T PRK00654 448 SWDKSAEEYLELYRRLLG 465 (466)
T ss_pred ChHHHHHHHHHHHHHHhh
Confidence 677788899999998764
No 12
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=100.00 E-value=3.7e-30 Score=291.09 Aligned_cols=346 Identities=14% Similarity=0.162 Sum_probs=251.9
Q ss_pred CEEEEEeCCCCC---ChhHHHHHHHHHHHHHCCCEEEEEEcCCCCc-------------------hHHHHHHhH-HHHHh
Q 001292 223 PRIGLILGNMAK---DSRSLLLITVVKNLQKLGYVFKIYAVRSGNS-------------------HSLWEQIAG-QISIL 279 (1106)
Q Consensus 223 ~RIalVlg~L~~---gGesl~vv~LakaLqe~GyeVtV~t~~dg~~-------------------~~i~r~lg~-lvkiI 279 (1106)
+||++|.+.+.+ ||.+..+..+++.|.+. ++|+|++...+.. ......+.. +....
T Consensus 1 mkI~~i~~~~~p~~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (388)
T TIGR02149 1 MKVTVLTREYPPNVYGGAGVHVEELTRELARL-MDVDVRCFGDQRFDSEGLTVKGYRPWSELKEANKALGTFSVDLAMAN 79 (388)
T ss_pred CeeEEEecccCccccccHhHHHHHHHHHHHHh-cCeeEEcCCCchhcCCCeEEEEecChhhccchhhhhhhhhHHHHHhh
Confidence 589999988865 78899999999999987 6666666543210 000001110 11112
Q ss_pred hccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccc-cchhhhhh--hHHhHHHHHHHHhccccE
Q 001292 280 GQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLAN-RLPVYVER--GFQNLLSYWKSVFSRVNV 356 (1106)
Q Consensus 280 r~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~-r~~~Y~~~--gleklis~~~~~l~~AD~ 356 (1106)
...++|++|.|.+...+...+..+. .++|+|+++|+..... +....... ....+. ....++.+|.
T Consensus 80 ~~~~~divh~~~~~~~~~~~~~~~~----------~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ad~ 147 (388)
T TIGR02149 80 DPVDADVVHSHTWYTFLAGHLAKKL----------YDKPLVVTAHSLEPLRPWKEEQLGGGYKLSSWA--EKTAIEAADR 147 (388)
T ss_pred CCCCCCeEeecchhhhhHHHHHHHh----------cCCCEEEEeecccccccccccccccchhHHHHH--HHHHHhhCCE
Confidence 2246899999987776655554432 5899999999853211 10000000 001111 1345789999
Q ss_pred EEecCCChhhh----hcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHH
Q 001292 357 IVFPDYTLPML----YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAV 432 (1106)
Q Consensus 357 VIa~S~~~~~~----~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dl 432 (1106)
++++|...... +.+++..++.+||| |+|. +.+.+. ....++.+++++++.++|+++||+.+ .||++.
T Consensus 148 vi~~S~~~~~~~~~~~~~~~~~~i~vi~n-g~~~---~~~~~~-~~~~~~~~~~~~~~~~~i~~~Grl~~----~Kg~~~ 218 (388)
T TIGR02149 148 VIAVSGGMREDILKYYPDLDPEKVHVIYN-GIDT---KEYKPD-DGNVVLDRYGIDRSRPYILFVGRITR----QKGVPH 218 (388)
T ss_pred EEEccHHHHHHHHHHcCCCCcceEEEecC-CCCh---hhcCCC-chHHHHHHhCCCCCceEEEEEccccc----ccCHHH
Confidence 99999765543 22556778999998 7987 555543 34567888999888999999999887 899999
Q ss_pred HHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCc--cHHHHHHHHHHcCCCCCcEEEcC---ChhhHHHHHHHcCeEEEc
Q 001292 433 AMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDG--YNDALQEVASRLGLLEHSVRHYG---FNGDVNGVLLMADIVLYG 507 (1106)
Q Consensus 433 LLeA~k~Ll~k~aklk~~~PdikfLIIVG~Gper--Y~eeLkeLaeklGL~d~rV~flG---~~eDL~~LyaaADVfV~P 507 (1106)
+++|++.+. ++++ ++++|.++.. +.+.+++.+..++....+|.+.+ +.+++..+|+.||++|+|
T Consensus 219 li~a~~~l~----------~~~~-l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~p 287 (388)
T TIGR02149 219 LLDAVHYIP----------KDVQ-VVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCP 287 (388)
T ss_pred HHHHHHHHh----------hcCc-EEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeC
Confidence 999997764 3455 4566655432 34667777777766433577654 357899999999999999
Q ss_pred cCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCH------HHHHHHHHHHHhCcccHHHHHHHHHH
Q 001292 508 SSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNP------EGLSRAFSLFISNGKLSKFARTVASA 581 (1106)
Q Consensus 508 S~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~------eeLAeAI~~LLsDpelRk~r~~mGe~ 581 (1106)
|..| +||++++||||||+|||+++.+++.|++.++.+|++++++|+ ++|+++|.++++|++. +.+|+.+
T Consensus 288 s~~e--~~g~~~lEA~a~G~PvI~s~~~~~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~---~~~~~~~ 362 (388)
T TIGR02149 288 SIYE--PLGIVNLEAMACGTPVVASATGGIPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLADPEL---AKKMGIA 362 (388)
T ss_pred CccC--CCChHHHHHHHcCCCEEEeCCCCHHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHhCHHH---HHHHHHH
Confidence 9987 999999999999999999999999999999999999999998 9999999999999987 6889999
Q ss_pred HHHHHHHhc-HHHHHHHHHHHHHHHh
Q 001292 582 GRLHAKNML-ALDCVTRYARILENVL 606 (1106)
Q Consensus 582 Are~ake~f-see~v~~Y~eLyeslL 606 (1106)
+++.+.+.| |+.++++|.++|++++
T Consensus 363 a~~~~~~~~s~~~~~~~~~~~y~~~~ 388 (388)
T TIGR02149 363 GRKRAEEEFSWGSIAKKTVEMYRKVL 388 (388)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhC
Confidence 999886655 5566669999999763
No 13
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=100.00 E-value=4.9e-30 Score=283.81 Aligned_cols=335 Identities=17% Similarity=0.243 Sum_probs=255.2
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCch-------------------HHHHHHhHHHHHhhccCc
Q 001292 224 RIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSH-------------------SLWEQIAGQISILGQEQY 284 (1106)
Q Consensus 224 RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~-------------------~i~r~lg~lvkiIr~~~p 284 (1106)
+|+++++.+..||.+..+..+++.|.++|++|++++..++... ..+..+..+.++++..++
T Consensus 1 ~il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 80 (360)
T cd04951 1 KILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLTGESEVKPPIDATIILNLNMSKNPLSFLLALWKLRKILRQFKP 80 (360)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEeCCCCccchhhccceEEecccccchhhHHHHHHHHHHHHhcCC
Confidence 4889999999999999999999999999999999987443211 011111224566777899
Q ss_pred cEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecCCCh
Q 001292 285 SLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTL 364 (1106)
Q Consensus 285 DiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~~~ 364 (1106)
|+||.+.+...++..+..+. ..++|+|.+.|+.....+. ..+...+ ....++.+++.+...
T Consensus 81 div~~~~~~~~~~~~l~~~~---------~~~~~~v~~~h~~~~~~~~--------~~~~~~~--~~~~~~~~~~~s~~~ 141 (360)
T cd04951 81 DVVHAHMFHANIFARLLRLF---------LPSPPLICTAHSKNEGGRL--------RMLAYRL--TDFLSDLTTNVSKEA 141 (360)
T ss_pred CEEEEcccchHHHHHHHHhh---------CCCCcEEEEeeccCchhHH--------HHHHHHH--HhhccCceEEEcHHH
Confidence 99999988776666655532 2578999999985321111 1111111 222355566555444
Q ss_pred hhh---hcCCCCCCEEEeCCCCCCcccccccCcc-hhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHHHh
Q 001292 365 PML---YSVLDAGNFFVIPGSPADVWAVEAYSKS-HEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPL 440 (1106)
Q Consensus 365 ~~~---~~gi~~~KI~VIpN~GVDl~~~e~F~ps-~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~L 440 (1106)
... ...++..++.+||| |+|. ..|.+. .....+++++++.+++++++++|++.+ .||.+.+++++.++
T Consensus 142 ~~~~~~~~~~~~~~~~~i~n-g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~----~kg~~~li~a~~~l 213 (360)
T cd04951 142 LDYFIASKAFNANKSFVVYN-GIDT---DRFRKDPARRLKIRNALGVKNDTFVILAVGRLVE----AKDYPNLLKAFAKL 213 (360)
T ss_pred HHHHHhccCCCcccEEEEcc-ccch---hhcCcchHHHHHHHHHcCcCCCCEEEEEEeeCch----hcCcHHHHHHHHHH
Confidence 333 22356788999998 7987 455543 334567888999888999999999887 88999999999877
Q ss_pred HHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHH
Q 001292 441 LIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIV 520 (1106)
Q Consensus 441 l~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLL 520 (1106)
.++. |+++ ++|+|.|+.. +.+++.++++++.+ +|.++|+.+++..+|+.||++++||..| +||++++
T Consensus 214 ~~~~-------~~~~-l~i~G~g~~~--~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~ad~~v~~s~~e--~~~~~~~ 280 (360)
T cd04951 214 LSDY-------LDIK-LLIAGDGPLR--ATLERLIKALGLSN-RVKLLGLRDDIAAYYNAADLFVLSSAWE--GFGLVVA 280 (360)
T ss_pred HhhC-------CCeE-EEEEcCCCcH--HHHHHHHHhcCCCC-cEEEecccccHHHHHHhhceEEeccccc--CCChHHH
Confidence 6432 7888 6889999975 88999999999887 8999999999999999999999999986 9999999
Q ss_pred HHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcH-HHHHHHHH
Q 001292 521 RAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLA-LDCVTRYA 599 (1106)
Q Consensus 521 EAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fs-ee~v~~Y~ 599 (1106)
||||+|+|||+++.+++.|++.+ +|++++++|+++++++|.++++++... +..++.+ ++.+.+.|+ +..+.+|.
T Consensus 281 Ea~a~G~PvI~~~~~~~~e~i~~--~g~~~~~~~~~~~~~~i~~ll~~~~~~--~~~~~~~-~~~~~~~~s~~~~~~~~~ 355 (360)
T cd04951 281 EAMACELPVVATDAGGVREVVGD--SGLIVPISDPEALANKIDEILKMSGEE--RDIIGAR-RERIVKKFSINSIVQQWL 355 (360)
T ss_pred HHHHcCCCEEEecCCChhhEecC--CceEeCCCCHHHHHHHHHHHHhCCHHH--HHHHHHH-HHHHHHhcCHHHHHHHHH
Confidence 99999999999999999999965 899999999999999999999554432 4566666 665555555 55666999
Q ss_pred HHHH
Q 001292 600 RILE 603 (1106)
Q Consensus 600 eLye 603 (1106)
++|+
T Consensus 356 ~~y~ 359 (360)
T cd04951 356 TLYT 359 (360)
T ss_pred HHhh
Confidence 9986
No 14
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=4.2e-30 Score=313.83 Aligned_cols=346 Identities=14% Similarity=0.078 Sum_probs=253.7
Q ss_pred CCCCC-EEEEEeCCCCCChhHHHHHHHHHHHHHCCC--------------EEEEEEc--CCCC--chH------------
Q 001292 219 GVRPP-RIGLILGNMAKDSRSLLLITVVKNLQKLGY--------------VFKIYAV--RSGN--SHS------------ 267 (1106)
Q Consensus 219 g~r~~-RIalVlg~L~~gGesl~vv~LakaLqe~Gy--------------eVtV~t~--~dg~--~~~------------ 267 (1106)
+.++. ||++|++++..||.+..++.|+.+|.+.++ .|.++++ .++. ...
T Consensus 277 ~~~~~~rIl~vi~sl~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~~~Gv~v~~l 356 (694)
T PRK15179 277 PESFVGPVLMINGSLGAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLADAGIPVSVY 356 (694)
T ss_pred CCCCcceEEEEeCCCCCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHHHHhCCCeEEEe
Confidence 56777 999999999999999999999999999955 3444422 1211 100
Q ss_pred ----------------------------HHHHHhHHHHHhhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcE
Q 001292 268 ----------------------------LWEQIAGQISILGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPL 319 (1106)
Q Consensus 268 ----------------------------i~r~lg~lvkiIr~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPV 319 (1106)
.+.....+.++++..+||+||+|.....++..+..+. .++|+
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~~kpDIVH~h~~~a~~lg~lAa~~----------~gvPv 426 (694)
T PRK15179 357 SDMQAWGGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRSSVPSVVHIWQDGSIFACALAALL----------AGVPR 426 (694)
T ss_pred ccCCccCcccccccchhhHHHhhhcchhHHHHHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHH----------cCCCE
Confidence 0111123566788889999999998888887777753 56888
Q ss_pred EE-EEcCCcccccchhhhhhhHHhHHHHHHHHhcccc--EEEecCCChhhh---hcCCCCCCEEEeCCCCCCcccccccC
Q 001292 320 VW-IIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVN--VIVFPDYTLPML---YSVLDAGNFFVIPGSPADVWAVEAYS 393 (1106)
Q Consensus 320 I~-tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD--~VIa~S~~~~~~---~~gi~~~KI~VIpN~GVDl~~~e~F~ 393 (1106)
|+ +.|+.........+ ..........+..++ .+++.+...... ..+++.+++.|||| |||. +.|.
T Consensus 427 Iv~t~h~~~~~~~~~~~-----~~~~~~l~~~l~~~~~~i~Vs~S~~~~~~l~~~~g~~~~kI~VI~N-GVd~---~~f~ 497 (694)
T PRK15179 427 IVLSVRTMPPVDRPDRY-----RVEYDIIYSELLKMRGVALSSNSQFAAHRYADWLGVDERRIPVVYN-GLAP---LKSV 497 (694)
T ss_pred EEEEeCCCccccchhHH-----HHHHHHHHHHHHhcCCeEEEeCcHHHHHHHHHHcCCChhHEEEECC-CcCH---HhcC
Confidence 76 55653211111010 000000111222333 444444333222 34678889999998 8997 5565
Q ss_pred cchhHHHHHHH--cCCCCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHH
Q 001292 394 KSHEKYQLRKE--NGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDAL 471 (1106)
Q Consensus 394 ps~s~~~LR~~--lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeL 471 (1106)
+.......+.. ..++.+.++|+++||+.+ .||++.+++|+..+.++. |+++ |+|+|+|+.+ +.+
T Consensus 498 ~~~~~~~~~~~~~~~~~~~~~vIg~VGRL~~----~KG~~~LI~A~a~l~~~~-------p~~~-LvIvG~G~~~--~~L 563 (694)
T PRK15179 498 QDDACTAMMAQFDARTSDARFTVGTVMRVDD----NKRPFLWVEAAQRFAASH-------PKVR-FIMVGGGPLL--ESV 563 (694)
T ss_pred CCchhhHHHHhhccccCCCCeEEEEEEeCCc----cCCHHHHHHHHHHHHHHC-------cCeE-EEEEccCcch--HHH
Confidence 43222211222 234556789999999988 999999999998886433 7888 6899999865 999
Q ss_pred HHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEc
Q 001292 472 QEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQ 551 (1106)
Q Consensus 472 keLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~ 551 (1106)
+++++++|+.+ +|+|+|+.+++..+|+.||++|+||.+| +||++++||||||+|||+++.+|++|+|.++.+|++++
T Consensus 564 ~~l~~~lgL~~-~V~flG~~~dv~~ll~aaDv~VlpS~~E--gfp~vlLEAMA~G~PVVat~~gG~~EiV~dg~~GlLv~ 640 (694)
T PRK15179 564 REFAQRLGMGE-RILFTGLSRRVGYWLTQFNAFLLLSRFE--GLPNVLIEAQFSGVPVVTTLAGGAGEAVQEGVTGLTLP 640 (694)
T ss_pred HHHHHHcCCCC-cEEEcCCcchHHHHHHhcCEEEeccccc--cchHHHHHHHHcCCeEEEECCCChHHHccCCCCEEEeC
Confidence 99999999998 9999999999999999999999999986 99999999999999999999999999999999999999
Q ss_pred CCC--HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcH-HHHHHHHHHHHH
Q 001292 552 KDN--PEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLA-LDCVTRYARILE 603 (1106)
Q Consensus 552 ~~D--~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fs-ee~v~~Y~eLye 603 (1106)
++| +++|+++|.+++.+... ...+++++++.+.+.|+ +.++.+|.++|+
T Consensus 641 ~~d~~~~~La~aL~~ll~~l~~---~~~l~~~ar~~a~~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 641 ADTVTAPDVAEALARIHDMCAA---DPGIARKAADWASARFSLNQMIASTVRCYQ 692 (694)
T ss_pred CCCCChHHHHHHHHHHHhChhc---cHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 877 46899999998887654 35678899999876665 556669999985
No 15
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.98 E-value=3.9e-30 Score=319.86 Aligned_cols=354 Identities=11% Similarity=0.087 Sum_probs=263.3
Q ss_pred CCCCEEEEEeCC-------------CCCChhHHHHHHHHHHHHHCC--CEEEEEEcCCCC--------------------
Q 001292 220 VRPPRIGLILGN-------------MAKDSRSLLLITVVKNLQKLG--YVFKIYAVRSGN-------------------- 264 (1106)
Q Consensus 220 ~r~~RIalVlg~-------------L~~gGesl~vv~LakaLqe~G--yeVtV~t~~dg~-------------------- 264 (1106)
-++..|+||+-+ -..||+.++++.|+++|.++| ++|.|+|-....
T Consensus 167 ~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~ 246 (1050)
T TIGR02468 167 EKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSE 246 (1050)
T ss_pred cCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccc
Confidence 346678877422 233789999999999999998 899998862110
Q ss_pred ---------------------------chHHHHHHhH----HHHHhhc--------------cCccEEEEccccHHHHHH
Q 001292 265 ---------------------------SHSLWEQIAG----QISILGQ--------------EQYSLIDWSIFDGIIADS 299 (1106)
Q Consensus 265 ---------------------------~~~i~r~lg~----lvkiIr~--------------~~pDiIh~~~~~~i~v~~ 299 (1106)
...+|..+.. +..++.. ..||+||.|.+++..+..
T Consensus 247 ~~~~~~~~~~g~rIvRip~GP~~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~aa~ 326 (1050)
T TIGR02468 247 NDGDEMGESSGAYIIRIPFGPRDKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDSAA 326 (1050)
T ss_pred cccccccCCCCeEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHHHH
Confidence 0112333222 2223221 148999999999999888
Q ss_pred HHHHHhhhhcccCCCCCCcEEEEEcCCccccc--c------h------hhhhhhHHhHHHHHHHHhccccEEEecCCChh
Q 001292 300 LEAKEAISSLMQEPFHSIPLVWIIQEDSLANR--L------P------VYVERGFQNLLSYWKSVFSRVNVIVFPDYTLP 365 (1106)
Q Consensus 300 La~k~~idII~te~~~gIPVI~tIHna~Ls~r--~------~------~Y~~~gleklis~~~~~l~~AD~VIa~S~~~~ 365 (1106)
+.... .++|+|.|.|.....+. + . .|.. ...+..-..++..||.||+.+....
T Consensus 327 ~L~~~----------lgVP~V~T~HSLgr~K~~~ll~~g~~~~~~~~~~y~~---~~Ri~~Ee~~l~~Ad~VIasT~qE~ 393 (1050)
T TIGR02468 327 LLSGA----------LNVPMVLTGHSLGRDKLEQLLKQGRMSKEEINSTYKI---MRRIEAEELSLDASEIVITSTRQEI 393 (1050)
T ss_pred HHHHh----------hCCCEEEECccchhhhhhhhcccccccccccccccch---HHHHHHHHHHHHhcCEEEEeCHHHH
Confidence 77753 68999999997321110 0 0 0110 1122222346889999999986655
Q ss_pred hh----hcCCC---------------------CCCEEEeCCCCCCcccccccCcchhH--------------------HH
Q 001292 366 ML----YSVLD---------------------AGNFFVIPGSPADVWAVEAYSKSHEK--------------------YQ 400 (1106)
Q Consensus 366 ~~----~~gi~---------------------~~KI~VIpN~GVDl~~~e~F~ps~s~--------------------~~ 400 (1106)
.. |.+++ ..++.|||| |||+ +.|.|.... ..
T Consensus 394 ~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPp-GVD~---~~F~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1050)
T TIGR02468 394 EEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPP-GMEF---SHIVPHDGDMDGETEGNEEHPAKPDPPIWSE 469 (1050)
T ss_pred HHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCC-CCcH---HHccCCCccccchhcccccccccccchhhHH
Confidence 42 33333 238999998 8998 777763110 12
Q ss_pred HHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCc---------cHHHH
Q 001292 401 LRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDG---------YNDAL 471 (1106)
Q Consensus 401 LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~Gper---------Y~eeL 471 (1106)
++ .+...++.++|+++||+.+ .||++.+|+|+..+... ...++++ +|+|.++.. +...+
T Consensus 470 l~-r~~~~pdkpvIL~VGRL~p----~KGi~~LIeAf~~L~~l-----~~~~nL~--LIiG~gdd~d~l~~~~~~~l~~L 537 (1050)
T TIGR02468 470 IM-RFFTNPRKPMILALARPDP----KKNITTLVKAFGECRPL-----RELANLT--LIMGNRDDIDEMSSGSSSVLTSV 537 (1050)
T ss_pred HH-hhcccCCCcEEEEEcCCcc----ccCHHHHHHHHHHhHhh-----ccCCCEE--EEEecCchhhhhhccchHHHHHH
Confidence 22 3345678889999999998 99999999999877531 1125554 456765431 24567
Q ss_pred HHHHHHcCCCCCcEEEcCC--hhhHHHHHHHc----CeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCC
Q 001292 472 QEVASRLGLLEHSVRHYGF--NGDVNGVLLMA----DIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGA 545 (1106)
Q Consensus 472 keLaeklGL~d~rV~flG~--~eDL~~LyaaA----DVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~ 545 (1106)
+++++++++.+ +|.|+|+ .+++..+|..| |+||+||.+| +||++++||||||+|||+++.||+.|+|.++.
T Consensus 538 ~~li~~lgL~g-~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~E--gFGLvlLEAMAcGlPVVASdvGG~~EII~~g~ 614 (1050)
T TIGR02468 538 LKLIDKYDLYG-QVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIE--PFGLTLIEAAAHGLPMVATKNGGPVDIHRVLD 614 (1050)
T ss_pred HHHHHHhCCCC-eEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccC--CCCHHHHHHHHhCCCEEEeCCCCcHHHhccCC
Confidence 88999999997 9999995 58899999988 6999999987 99999999999999999999999999999999
Q ss_pred eEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcC
Q 001292 546 QVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILENVLNF 608 (1106)
Q Consensus 546 nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLyeslLk~ 608 (1106)
+|+++++.|+++|+++|..+++|+++ +++|+.+|++.+.++.|..++.+|.+++..+...
T Consensus 615 nGlLVdP~D~eaLA~AL~~LL~Dpel---r~~m~~~gr~~v~~FSWe~ia~~yl~~i~~~~~~ 674 (1050)
T TIGR02468 615 NGLLVDPHDQQAIADALLKLVADKQL---WAECRQNGLKNIHLFSWPEHCKTYLSRIASCRPR 674 (1050)
T ss_pred cEEEECCCCHHHHHHHHHHHhhCHHH---HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999998 6889999999998888888889999999988644
No 16
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.98 E-value=5.1e-30 Score=284.20 Aligned_cols=322 Identities=17% Similarity=0.208 Sum_probs=249.8
Q ss_pred EEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCch--------------------HHHHHHhHHHHHhhccCccE
Q 001292 227 LILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSH--------------------SLWEQIAGQISILGQEQYSL 286 (1106)
Q Consensus 227 lVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~--------------------~i~r~lg~lvkiIr~~~pDi 286 (1106)
.+++++..||.+..+..++++|+++||+|.+++....... ..+.....+.+.++..++|+
T Consensus 2 ~~~~~~~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~di 81 (355)
T cd03819 2 QVLPALESGGVERGTLELARALVERGHRSLVASAGGRLVAELEAEGSRHIKLPFISKNPLRILLNVARLRRLIREEKVDI 81 (355)
T ss_pred ccchhhccCcHHHHHHHHHHHHHHcCCEEEEEcCCCchHHHHHhcCCeEEEccccccchhhhHHHHHHHHHHHHHcCCCE
Confidence 3567888899999999999999999999999875321110 01112222556677789999
Q ss_pred EEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecCCChhh
Q 001292 287 IDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPM 366 (1106)
Q Consensus 287 Ih~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~~~~~ 366 (1106)
||.+.....+...+..+ ..++|+|+++|+.. .... .+...+..+|.+++.+.....
T Consensus 82 i~~~~~~~~~~~~~~~~----------~~~~~~i~~~h~~~--------~~~~------~~~~~~~~~~~vi~~s~~~~~ 137 (355)
T cd03819 82 VHARSRAPAWSAYLAAR----------RTRPPFVTTVHGFY--------SVNF------RYNAIMARGDRVIAVSNFIAD 137 (355)
T ss_pred EEECCCchhHHHHHHHH----------hcCCCEEEEeCCch--------hhHH------HHHHHHHhcCEEEEeCHHHHH
Confidence 99987665555544432 25799999999862 1100 223446689999998866554
Q ss_pred h---hcCCCCCCEEEeCCCCCCcccccccCcch----hHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHHH
Q 001292 367 L---YSVLDAGNFFVIPGSPADVWAVEAYSKSH----EKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGP 439 (1106)
Q Consensus 367 ~---~~gi~~~KI~VIpN~GVDl~~~e~F~ps~----s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~ 439 (1106)
. ..+++..++.+||| |+|. ..|.+.. ....+|++++.+++.++++++||+.. .||.+.+++++..
T Consensus 138 ~~~~~~~~~~~k~~~i~n-gi~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gr~~~----~Kg~~~li~~~~~ 209 (355)
T cd03819 138 HIRENYGVDPDRIRVIPR-GVDL---DRFDPGAVPPERILALAREWPLPKGKPVILLPGRLTR----WKGQEVFIEALAR 209 (355)
T ss_pred HHHHhcCCChhhEEEecC-Cccc---cccCccccchHHHHHHHHHcCCCCCceEEEEeecccc----ccCHHHHHHHHHH
Confidence 4 34667788999998 7987 4554321 11236778888888999999999887 8999999999988
Q ss_pred hHHHHHhhccCCCCeEEEEEEcCCCCc--cHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEcc-CCCCCCCc
Q 001292 440 LLIKYARRNSVEGSFKFVFLCGNSTDG--YNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGS-SQVEQGFP 516 (1106)
Q Consensus 440 Ll~k~aklk~~~PdikfLIIVG~Gper--Y~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS-~~EeEGFG 516 (1106)
+.+. +++++ ++++|.++.. +.+.+.+.++++++.+ +|.|+|+.+++..+|+.||++++|| ..| +||
T Consensus 210 l~~~-------~~~~~-l~ivG~~~~~~~~~~~~~~~~~~~~~~~-~v~~~g~~~~~~~~l~~ad~~i~ps~~~e--~~~ 278 (355)
T cd03819 210 LKKD-------DPDVH-LLIVGDAQGRRFYYAELLELIKRLGLQD-RVTFVGHCSDMPAAYALADIVVSASTEPE--AFG 278 (355)
T ss_pred HHhc-------CCCeE-EEEEECCcccchHHHHHHHHHHHcCCcc-eEEEcCCcccHHHHHHhCCEEEecCCCCC--CCc
Confidence 7642 36787 6888987643 3455667788889887 8999999999999999999999999 554 999
Q ss_pred HHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHHHHHhcHHHH
Q 001292 517 SLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS-NGKLSKFARTVASAGRLHAKNMLALDC 594 (1106)
Q Consensus 517 lvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs-DpelRk~r~~mGe~Are~ake~fsee~ 594 (1106)
++++||||+|+|||+++.++..|++.++.+|++++++|+++++++|..++. +++. +.+++++|++.++++|+.+.
T Consensus 279 ~~l~EA~a~G~PvI~~~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~---~~~~~~~a~~~~~~~f~~~~ 354 (355)
T cd03819 279 RTAVEAQAMGRPVIASDHGGARETVRPGETGLLVPPGDAEALAQALDQILSLLPEG---RAKMFAKARMCVETLFSYDR 354 (355)
T ss_pred hHHHHHHhcCCCEEEcCCCCcHHHHhCCCceEEeCCCCHHHHHHHHHHHHhhCHHH---HHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999999999999999999999999999999975554 6665 68999999999999998653
No 17
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.98 E-value=1.3e-29 Score=291.67 Aligned_cols=347 Identities=14% Similarity=0.116 Sum_probs=255.0
Q ss_pred CEEEEEeCCCCC--ChhHHHHHHHHHHHHHCCCEEEEEEcCCCC--------------c-------------------hH
Q 001292 223 PRIGLILGNMAK--DSRSLLLITVVKNLQKLGYVFKIYAVRSGN--------------S-------------------HS 267 (1106)
Q Consensus 223 ~RIalVlg~L~~--gGesl~vv~LakaLqe~GyeVtV~t~~dg~--------------~-------------------~~ 267 (1106)
+||++|...+.+ +|.+..+..+++.|.++||+|+|+|..+.. . ..
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G~~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~r~~~~~~~~~~ 80 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARGHEVRVITAPPYYPQWRVGEGYSAWRYRRESEGGVTVWRCPLYVPKQPS 80 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCCCeEEEEecCCCCCCCCCCcccccccceeeecCCeEEEEccccCCCCcc
Confidence 589999876654 788889999999999999999999864210 0 00
Q ss_pred HH-HHH-------hHHHHHhh--ccCccEEEEccccH--HHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccch--
Q 001292 268 LW-EQI-------AGQISILG--QEQYSLIDWSIFDG--IIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLP-- 333 (1106)
Q Consensus 268 i~-r~l-------g~lvkiIr--~~~pDiIh~~~~~~--i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~-- 333 (1106)
.+ +.. .....+++ ..++|+||.+.+.. .+...+.++. .++|+|+++|+........
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~p~~~~~~~~~~~~~~----------~~~~~v~~~~d~~~~~~~~~~ 150 (412)
T PRK10307 81 GLKRLLHLGSFALSSFFPLLAQRRWRPDRVIGVVPTLFCAPGARLLARL----------SGARTWLHIQDYEVDAAFGLG 150 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEeCCcHHHHHHHHHHHHh----------hCCCEEEEeccCCHHHHHHhC
Confidence 00 000 00111122 16799999976443 2233333322 5789999998742110000
Q ss_pred hhhhhhHHhHHHH-HHHHhccccEEEecCCChhhh--hcCCCCCCEEEeCCCCCCcccccccCcch--hHHHHHHHcCCC
Q 001292 334 VYVERGFQNLLSY-WKSVFSRVNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAVEAYSKSH--EKYQLRKENGFL 408 (1106)
Q Consensus 334 ~Y~~~gleklis~-~~~~l~~AD~VIa~S~~~~~~--~~gi~~~KI~VIpN~GVDl~~~e~F~ps~--s~~~LR~~lGL~ 408 (1106)
......+.++... ....++.+|.|++.|....+. ..+.+..++.+||| |+|. +.|.+.. ....++++++++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~~~~~~~~~i~vi~n-gvd~---~~~~~~~~~~~~~~~~~~~~~ 226 (412)
T PRK10307 151 LLKGGKVARLATAFERSLLRRFDNVSTISRSMMNKAREKGVAAEKVIFFPN-WSEV---ARFQPVADADVDALRAQLGLP 226 (412)
T ss_pred CccCcHHHHHHHHHHHHHHhhCCEEEecCHHHHHHHHHcCCCcccEEEECC-CcCH---hhcCCCCccchHHHHHHcCCC
Confidence 0000001111111 123577899999999776654 34567778999998 7997 5565432 234578889998
Q ss_pred CCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEc
Q 001292 409 KDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHY 488 (1106)
Q Consensus 409 ~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~fl 488 (1106)
++.++++++|++.. .||++.+++|++.+. ..++++ |+|+|+|+.. ++++++++++++. +|.|+
T Consensus 227 ~~~~~i~~~G~l~~----~kg~~~li~a~~~l~--------~~~~~~-l~ivG~g~~~--~~l~~~~~~~~l~--~v~f~ 289 (412)
T PRK10307 227 DGKKIVLYSGNIGE----KQGLELVIDAARRLR--------DRPDLI-FVICGQGGGK--ARLEKMAQCRGLP--NVHFL 289 (412)
T ss_pred CCCEEEEEcCcccc----ccCHHHHHHHHHHhc--------cCCCeE-EEEECCChhH--HHHHHHHHHcCCC--ceEEe
Confidence 88899999999887 899999999997552 126788 6889999975 8999999999986 69999
Q ss_pred CC--hhhHHHHHHHcCeEEEccCCCCCC----CcHHHHHHHHhCCCEEecCCCC--chhhhccCCeEEEEcCCCHHHHHH
Q 001292 489 GF--NGDVNGVLLMADIVLYGSSQVEQG----FPSLIVRAMTFGIPVITPDFPI--IKEYVAEGAQVIFFQKDNPEGLSR 560 (1106)
Q Consensus 489 G~--~eDL~~LyaaADVfV~PS~~EeEG----FGlvLLEAMA~G~PVIASD~gG--I~EiV~Dg~nG~LV~~~D~eeLAe 560 (1106)
|+ .+++..+|++||++++||..| + +|.+++||||||+|||+++.+| +.+++. .+|++++++|+++|++
T Consensus 290 G~~~~~~~~~~~~~aDi~v~ps~~e--~~~~~~p~kl~eama~G~PVi~s~~~g~~~~~~i~--~~G~~~~~~d~~~la~ 365 (412)
T PRK10307 290 PLQPYDRLPALLKMADCHLLPQKAG--AADLVLPSKLTNMLASGRNVVATAEPGTELGQLVE--GIGVCVEPESVEALVA 365 (412)
T ss_pred CCCCHHHHHHHHHhcCEeEEeeccC--cccccCcHHHHHHHHcCCCEEEEeCCCchHHHHHh--CCcEEeCCCCHHHHHH
Confidence 95 478999999999999999876 5 6888999999999999999876 468785 5999999999999999
Q ss_pred HHHHHHhCcccHHHHHHHHHHHHHHHHHhcH-HHHHHHHHHHHHHHhc
Q 001292 561 AFSLFISNGKLSKFARTVASAGRLHAKNMLA-LDCVTRYARILENVLN 607 (1106)
Q Consensus 561 AI~~LLsDpelRk~r~~mGe~Are~ake~fs-ee~v~~Y~eLyeslLk 607 (1106)
+|.++++|+++ +.+|+++|++.+++.|+ +..+.+|.++|++++.
T Consensus 366 ~i~~l~~~~~~---~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 410 (412)
T PRK10307 366 AIAALARQALL---RPKLGTVAREYAERTLDKENVLRQFIADIRGLVA 410 (412)
T ss_pred HHHHHHhCHHH---HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhc
Confidence 99999999987 68999999999987655 5566699999998764
No 18
>PRK14099 glycogen synthase; Provisional
Probab=99.98 E-value=6.4e-30 Score=302.98 Aligned_cols=353 Identities=12% Similarity=0.116 Sum_probs=258.7
Q ss_pred CCCEEEEEeCCCCC----ChhHHHHHHHHHHHHHCCCEEEEEEcCCCCch------------------------------
Q 001292 221 RPPRIGLILGNMAK----DSRSLLLITVVKNLQKLGYVFKIYAVRSGNSH------------------------------ 266 (1106)
Q Consensus 221 r~~RIalVlg~L~~----gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~------------------------------ 266 (1106)
++++|++|..++.+ ||-.-.+..|.++|+++|++|.|+.+..+...
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYPAVLAGIEDAEQVHSFPDLFGGPARLLAARAGGL 81 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCcchhhhhcCceEEEEEeeeCCceEEEEEEEeCCc
Confidence 46899999988866 88889999999999999999988775221100
Q ss_pred -------H--------HH------------HHHh----HHHHHh----hccCccEEEEccccHHHHHHHHHHHhhhhccc
Q 001292 267 -------S--------LW------------EQIA----GQISIL----GQEQYSLIDWSIFDGIIADSLEAKEAISSLMQ 311 (1106)
Q Consensus 267 -------~--------i~------------r~lg----~lvkiI----r~~~pDiIh~~~~~~i~v~~La~k~~idII~t 311 (1106)
. ++ ..+. +...++ ...+||+||+|.+.+.++..+.....
T Consensus 82 ~~~~~~~~~~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~~~~pDIiH~Hdw~~~l~~~~l~~~~------ 155 (485)
T PRK14099 82 DLFVLDAPHLYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVPGFVPDIVHAHDWQAGLAPAYLHYSG------ 155 (485)
T ss_pred eEEEEeChHhhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhccCCCCCEEEECCcHHHHHHHHHHhCC------
Confidence 0 00 0000 011222 24689999999999888776554211
Q ss_pred CCCCCCcEEEEEcCCcccccchh------------hhhhhHHh--HHHHHHHHhccccEEEecCCChhhhh----cC---
Q 001292 312 EPFHSIPLVWIIQEDSLANRLPV------------YVERGFQN--LLSYWKSVFSRVNVIVFPDYTLPMLY----SV--- 370 (1106)
Q Consensus 312 e~~~gIPVI~tIHna~Ls~r~~~------------Y~~~glek--lis~~~~~l~~AD~VIa~S~~~~~~~----~g--- 370 (1106)
..++|+|+|+|+......... +...+.+. .+...+..+..+|.|+++|....... .+
T Consensus 156 --~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~~ad~vitVS~~~a~ei~~~~~g~gl 233 (485)
T PRK14099 156 --RPAPGTVFTIHNLAFQGQFPRELLGALGLPPSAFSLDGVEYYGGIGYLKAGLQLADRITTVSPTYALEIQGPEAGMGL 233 (485)
T ss_pred --CCCCCEEEeCCCCCCCCcCCHHHHHHcCCChHHcCchhhhhCCCccHHHHHHHhcCeeeecChhHHHHHhcccCCcCh
Confidence 246899999999543221110 00000000 01123456789999999997765431 11
Q ss_pred -----CCCCCEEEeCCCCCCcccccccCcchh------------------HHHHHHHcCCCC--CcEEEEEEcccCcccc
Q 001292 371 -----LDAGNFFVIPGSPADVWAVEAYSKSHE------------------KYQLRKENGFLK--DEIVVVVVGSSFFYNE 425 (1106)
Q Consensus 371 -----i~~~KI~VIpN~GVDl~~~e~F~ps~s------------------~~~LR~~lGL~~--d~~VIL~VGRl~~y~k 425 (1106)
.+..++.+|+| |+|. +.|.|... +..+++++|++. +.++|+++||+.+
T Consensus 234 ~~~l~~~~~ki~vI~N-GID~---~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~li~~VgRL~~--- 306 (485)
T PRK14099 234 DGLLRQRADRLSGILN-GIDT---AVWNPATDELIAATYDVETLAARAANKAALQARFGLDPDPDALLLGVISRLSW--- 306 (485)
T ss_pred HHHHHhhCCCeEEEec-CCch---hhccccccchhhhcCChhHHHhHHHhHHHHHHHcCCCcccCCcEEEEEecCCc---
Confidence 23678999998 8998 55655321 356788999974 5789999999998
Q ss_pred ccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHH-HHcCeE
Q 001292 426 LSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVL-LMADIV 504 (1106)
Q Consensus 426 g~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Ly-aaADVf 504 (1106)
+||++.+++|+..+.+ .+++ |+|+|.|+..+.+.+++++++++ +..+.++|+.+++..+| +.||++
T Consensus 307 -~KG~d~Li~A~~~l~~---------~~~~-lvivG~G~~~~~~~l~~l~~~~~--~~v~~~~G~~~~l~~~~~a~aDif 373 (485)
T PRK14099 307 -QKGLDLLLEALPTLLG---------EGAQ-LALLGSGDAELEARFRAAAQAYP--GQIGVVIGYDEALAHLIQAGADAL 373 (485)
T ss_pred -cccHHHHHHHHHHHHh---------cCcE-EEEEecCCHHHHHHHHHHHHHCC--CCEEEEeCCCHHHHHHHHhcCCEE
Confidence 9999999999987753 2456 68889887545688888888764 31347999988999887 579999
Q ss_pred EEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccC---------CeEEEEcCCCHHHHHHHHHH---HHhCcccH
Q 001292 505 LYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEG---------AQVIFFQKDNPEGLSRAFSL---FISNGKLS 572 (1106)
Q Consensus 505 V~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg---------~nG~LV~~~D~eeLAeAI~~---LLsDpelR 572 (1106)
++||.+| +||++++|||+||+|+|++++||++|+|.++ .+|+++++.|+++|+++|.+ +++|++.
T Consensus 374 v~PS~~E--~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~~l~~d~~~- 450 (485)
T PRK14099 374 LVPSRFE--PCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPVTADALAAALRKTAALFADPVA- 450 (485)
T ss_pred EECCccC--CCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCCCCHHHHHHHHHHHHHHhcCHHH-
Confidence 9999987 9999999999999988889999999999775 58999999999999999997 6778876
Q ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcC
Q 001292 573 KFARTVASAGRLHAKNMLALDCVTRYARILENVLNF 608 (1106)
Q Consensus 573 k~r~~mGe~Are~ake~fsee~v~~Y~eLyeslLk~ 608 (1106)
+++|+++++ .+++.|+.++++|.++|++++..
T Consensus 451 --~~~l~~~~~--~~~fSw~~~a~~y~~lY~~l~~~ 482 (485)
T PRK14099 451 --WRRLQRNGM--TTDVSWRNPAQHYAALYRSLVAE 482 (485)
T ss_pred --HHHHHHHhh--hhcCChHHHHHHHHHHHHHHHhh
Confidence 588888886 35667788888999999998753
No 19
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.98 E-value=9.7e-30 Score=282.31 Aligned_cols=327 Identities=18% Similarity=0.209 Sum_probs=244.4
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCC--chH------------------HHHHHhHHHHHhhccC
Q 001292 224 RIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGN--SHS------------------LWEQIAGQISILGQEQ 283 (1106)
Q Consensus 224 RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~--~~~------------------i~r~lg~lvkiIr~~~ 283 (1106)
||+++.+++..||.+..+..++++|.+.||+|++++..... ... .+..+..+.+.++..+
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYDDEIEKLGGKIYYIPARKKNPLKYFKKLYKLIKKNK 80 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCCcchHHHHHHcCCeEEEecCCCccHHHHHHHHHHHHhcCC
Confidence 68999999999999999999999999999999999985533 111 1112222455567789
Q ss_pred ccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCc-EEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecCC
Q 001292 284 YSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIP-LVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDY 362 (1106)
Q Consensus 284 pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIP-VI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~ 362 (1106)
+|+||++......+..+..+. .++| ++++.|+............. ..+.. ...+..++.+++.+.
T Consensus 81 ~Dvv~~~~~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~i~~s~ 146 (358)
T cd03812 81 YDIVHVHGSSASGFILLAAKK----------AGVKVRIAHSHNTSDSHDKKKKILK--YKVLR--KLINRLATDYLACSE 146 (358)
T ss_pred CCEEEEeCcchhHHHHHHHhh----------CCCCeEEEEeccccccccccchhhH--HHHHH--HHHHhcCCEEEEcCH
Confidence 999999887654444444332 2344 46677775332222111000 00111 234567888888886
Q ss_pred Chhhh-hcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHHHhH
Q 001292 363 TLPML-YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLL 441 (1106)
Q Consensus 363 ~~~~~-~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll 441 (1106)
..... .......++.+||| |+|+ ..+.+.......+...+..++.++|+++||+.+ .||++.+++|+..|.
T Consensus 147 ~~~~~~~~~~~~~~~~vi~n-gvd~---~~~~~~~~~~~~~~~~~~~~~~~~i~~vGr~~~----~Kg~~~li~a~~~l~ 218 (358)
T cd03812 147 EAGKWLFGKVKNKKFKVIPN-GIDL---EKFIFNEEIRKKRRELGILEDKFVIGHVGRFSE----QKNHEFLIEIFAELL 218 (358)
T ss_pred HHHHHHHhCCCcccEEEEec-cCcH---HHcCCCchhhhHHHHcCCCCCCEEEEEEecccc----ccChHHHHHHHHHHH
Confidence 65544 22255678999998 7997 555443322223566777888999999999888 899999999998886
Q ss_pred HHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHH
Q 001292 442 IKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVR 521 (1106)
Q Consensus 442 ~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLE 521 (1106)
++ +++++ ++|+|+++.. +.+++.++++++.+ +|.++|+.+++..+|+.||++|+||..| ++|++++|
T Consensus 219 ~~-------~~~~~-l~ivG~g~~~--~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~adi~v~ps~~E--~~~~~~lE 285 (358)
T cd03812 219 KK-------NPNAK-LLLVGDGELE--EEIKKKVKELGLED-KVIFLGVRNDVPELLQAMDVFLFPSLYE--GLPLVLIE 285 (358)
T ss_pred Hh-------CCCeE-EEEEeCCchH--HHHHHHHHhcCCCC-cEEEecccCCHHHHHHhcCEEEeccccc--CCCHHHHH
Confidence 43 37888 6889999865 88999999999987 9999999889999999999999999986 99999999
Q ss_pred HHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHh
Q 001292 522 AMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNM 589 (1106)
Q Consensus 522 AMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~ 589 (1106)
|||+|+|||+++.++..+++.+ ..|++...+++++++++|.++++|+++ +++++..+......+
T Consensus 286 Ama~G~PvI~s~~~~~~~~i~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~---~~~~~~~~~~~~~~~ 349 (358)
T cd03812 286 AQASGLPCILSDTITKEVDLTD-LVKFLSLDESPEIWAEEILKLKSEDRR---ERSSESIKKKGLDAD 349 (358)
T ss_pred HHHhCCCEEEEcCCchhhhhcc-CccEEeCCCCHHHHHHHHHHHHhCcch---hhhhhhhhhccchhh
Confidence 9999999999999999999988 466677767889999999999999998 466666655544433
No 20
>PLN02316 synthase/transferase
Probab=99.97 E-value=2e-29 Score=314.36 Aligned_cols=346 Identities=14% Similarity=0.068 Sum_probs=259.4
Q ss_pred CCCCEEEEEeCCCCC----ChhHHHHHHHHHHHHHCCCEEEEEEcCCCCch-----------------------------
Q 001292 220 VRPPRIGLILGNMAK----DSRSLLLITVVKNLQKLGYVFKIYAVRSGNSH----------------------------- 266 (1106)
Q Consensus 220 ~r~~RIalVlg~L~~----gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~----------------------------- 266 (1106)
..+++|++|+..+.+ ||..-.+..|.++|+++|++|.|+++..+...
T Consensus 585 ~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G 664 (1036)
T PLN02316 585 EPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDLHYQRSYSWGGTEIKVWFGKVEG 664 (1036)
T ss_pred CCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccceEEEEeccCCEEEEEEEEEECC
Confidence 345899999988765 99999999999999999999999988543100
Q ss_pred ----------HH------------HHHHh----HHHHHhhc--cCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCc
Q 001292 267 ----------SL------------WEQIA----GQISILGQ--EQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIP 318 (1106)
Q Consensus 267 ----------~i------------~r~lg----~lvkiIr~--~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIP 318 (1106)
.. ...+. +...+++. .+||+||+|.+.+.++..+.+.... .....++|
T Consensus 665 V~vyfl~~~~~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~talva~llk~~~~----~~~~~~~p 740 (1036)
T PLN02316 665 LSVYFLEPQNGMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSSAPVAWLFKDHYA----HYGLSKAR 740 (1036)
T ss_pred cEEEEEeccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHHhhh----hhccCCCC
Confidence 00 00000 02223322 5799999999988887766654211 01135789
Q ss_pred EEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecCCChhhh---hcCCC--CCCEEEeCCCCCCcccccccC
Q 001292 319 LVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPML---YSVLD--AGNFFVIPGSPADVWAVEAYS 393 (1106)
Q Consensus 319 VI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~~~~~~---~~gi~--~~KI~VIpN~GVDl~~~e~F~ 393 (1106)
+|+|+|+.... . .. ....+..+|.|+++|...... ...+. ..++.+|+| |||+ +.|.
T Consensus 741 ~V~TiHnl~~~-------~----n~---lk~~l~~AD~ViTVS~tya~EI~~~~~l~~~~~Kl~vI~N-GID~---~~w~ 802 (1036)
T PLN02316 741 VVFTIHNLEFG-------A----NH---IGKAMAYADKATTVSPTYSREVSGNSAIAPHLYKFHGILN-GIDP---DIWD 802 (1036)
T ss_pred EEEEeCCcccc-------h----hH---HHHHHHHCCEEEeCCHHHHHHHHhccCcccccCCEEEEEC-Cccc---cccC
Confidence 99999985311 1 01 123567899999999776543 12232 478999998 8998 4443
Q ss_pred cc-------------------hhHHHHHHHcCCCC-CcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCC
Q 001292 394 KS-------------------HEKYQLRKENGFLK-DEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGS 453 (1106)
Q Consensus 394 ps-------------------~s~~~LR~~lGL~~-d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~Pd 453 (1106)
|. ..+..+++++|++. +.++|++|||+.. +||++++++|+..++. .+
T Consensus 803 P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~~d~plVg~VGRL~~----qKGvdlLi~Al~~ll~---------~~ 869 (1036)
T PLN02316 803 PYNDNFIPVPYTSENVVEGKRAAKEALQQRLGLKQADLPLVGIITRLTH----QKGIHLIKHAIWRTLE---------RN 869 (1036)
T ss_pred CcccccccccCCchhhhhhhhhhHHHHHHHhCCCcccCeEEEEEecccc----ccCHHHHHHHHHHHhh---------cC
Confidence 32 12456788999984 6799999999998 9999999999987763 35
Q ss_pred eEEEEEEcCCCCc-cHHHHHHHHHHcCC--CCCcEEEcCChhh-H-HHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCC
Q 001292 454 FKFVFLCGNSTDG-YNDALQEVASRLGL--LEHSVRHYGFNGD-V-NGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIP 528 (1106)
Q Consensus 454 ikfLIIVG~Gper-Y~eeLkeLaeklGL--~d~rV~flG~~eD-L-~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~P 528 (1106)
++ |+|+|.||+. +.+.++++++++++ ++ +|.|.|..++ + ..+|++||+||+||.+| +||+++||||+||+|
T Consensus 870 ~q-lVIvG~Gpd~~~e~~l~~La~~Lg~~~~~-rV~f~g~~de~lah~iyaaADiflmPS~~E--P~GLvqLEAMa~Gtp 945 (1036)
T PLN02316 870 GQ-VVLLGSAPDPRIQNDFVNLANQLHSSHHD-RARLCLTYDEPLSHLIYAGADFILVPSIFE--PCGLTQLTAMRYGSI 945 (1036)
T ss_pred cE-EEEEeCCCCHHHHHHHHHHHHHhCccCCC-eEEEEecCCHHHHHHHHHhCcEEEeCCccc--CccHHHHHHHHcCCC
Confidence 67 5789998753 35788899998876 44 8998875544 3 37999999999999997 999999999999999
Q ss_pred EEecCCCCchhhhccC-------------CeEEEEcCCCHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHHHHh-cHHH
Q 001292 529 VITPDFPIIKEYVAEG-------------AQVIFFQKDNPEGLSRAFSLFISNG-KLSKFARTVASAGRLHAKNM-LALD 593 (1106)
Q Consensus 529 VIASD~gGI~EiV~Dg-------------~nG~LV~~~D~eeLAeAI~~LLsDp-elRk~r~~mGe~Are~ake~-fsee 593 (1106)
||++++||++++|.|+ .+|+++++.|+++|+.+|.+++++. +. ...++..+++.+.+. .|..
T Consensus 946 pVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~~~~~---~~~~~~~~r~~m~~dFSW~~ 1022 (1036)
T PLN02316 946 PVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISAWYDG---RDWFNSLCKRVMEQDWSWNR 1022 (1036)
T ss_pred eEEEcCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhhhhhh---HHHHHHHHHHHHHhhCCHHH
Confidence 9999999999999884 6999999999999999999999874 33 455777888776654 5566
Q ss_pred HHHHHHHHHHHHhc
Q 001292 594 CVTRYARILENVLN 607 (1106)
Q Consensus 594 ~v~~Y~eLyeslLk 607 (1106)
.+.+|.++|+.+.+
T Consensus 1023 ~A~~Y~~LY~~a~~ 1036 (1036)
T PLN02316 1023 PALDYMELYHSARK 1036 (1036)
T ss_pred HHHHHHHHHHHHhC
Confidence 66799999998753
No 21
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.97 E-value=1.5e-29 Score=297.63 Aligned_cols=348 Identities=16% Similarity=0.159 Sum_probs=254.9
Q ss_pred CEEEEEeCCCCC----ChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchH-------------------------------
Q 001292 223 PRIGLILGNMAK----DSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHS------------------------------- 267 (1106)
Q Consensus 223 ~RIalVlg~L~~----gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~------------------------------- 267 (1106)
++|++|+.++.+ ||...++..|.++|+++|++|.|+++..+....
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEVDDQVKVVELVDLSVGPRTLYVKVFEGVVE 80 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhhhhccCeEEEEEEEEeecCceeEEEEEEEEEC
Confidence 579999888544 899999999999999999999999774321100
Q ss_pred ------------------HH---------HH--Hh-HHHHHhh--ccCccEEEEccccHHHHHHHHHHHhhhhcccCCCC
Q 001292 268 ------------------LW---------EQ--IA-GQISILG--QEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFH 315 (1106)
Q Consensus 268 ------------------i~---------r~--lg-~lvkiIr--~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~ 315 (1106)
++ +. +. .....++ ..+||+||+|.+.+.++..+.+...- ..
T Consensus 81 ~v~~~~i~~~~~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~~~~DiiH~hdw~~~~~~~~l~~~~~-------~~ 153 (473)
T TIGR02095 81 GVPVYFIDNPSLFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGLGWQPDVVHAHDWHTALVPALLKAVYR-------PN 153 (473)
T ss_pred CceEEEEECHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHHHHHHHHHhhcc-------CC
Confidence 00 00 00 0222332 25899999999988887776664320 01
Q ss_pred CCcEEEEEcCCcccccchh------------hhhhhHH--hHHHHHHHHhccccEEEecCCChhhhh----c--C-----
Q 001292 316 SIPLVWIIQEDSLANRLPV------------YVERGFQ--NLLSYWKSVFSRVNVIVFPDYTLPMLY----S--V----- 370 (1106)
Q Consensus 316 gIPVI~tIHna~Ls~r~~~------------Y~~~gle--klis~~~~~l~~AD~VIa~S~~~~~~~----~--g----- 370 (1106)
++|+|+|+|+......... +....+. ..+...+..+..+|.|+++|....... . +
T Consensus 154 ~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~l~~~l 233 (473)
T TIGR02095 154 PIKTVFTIHNLAYQGVFPADDFSELGLPPEYFHMEGLEFYGRVNFLKGGIVYADRVTTVSPTYAREILTPEFGYGLDGVL 233 (473)
T ss_pred CCCEEEEcCCCccCCcCCHHHHHHcCCChHHcCchhhhcCCchHHHHHHHHhCCcCeecCHhHHHHhcCCcCCccchhHH
Confidence 4899999999532111110 0000000 012223456789999999987654431 1 1
Q ss_pred -CCCCCEEEeCCCCCCcccccccCcch------------------hHHHHHHHcCCCC--CcEEEEEEcccCccccccCC
Q 001292 371 -LDAGNFFVIPGSPADVWAVEAYSKSH------------------EKYQLRKENGFLK--DEIVVVVVGSSFFYNELSWD 429 (1106)
Q Consensus 371 -i~~~KI~VIpN~GVDl~~~e~F~ps~------------------s~~~LR~~lGL~~--d~~VIL~VGRl~~y~kg~Kg 429 (1106)
.++.++.+|+| |+|. +.|.|.. .+..+++++|++. +.++|+++||+.+ +||
T Consensus 234 ~~~~~ki~~I~N-Gid~---~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~~i~~vGrl~~----~Kg 305 (473)
T TIGR02095 234 KARSGKLRGILN-GIDT---EVWNPATDPYLKANYSADDLAGKAENKEALQEELGLPVDDDVPLFGVISRLTQ----QKG 305 (473)
T ss_pred HhcCCCeEEEeC-CCCc---cccCCCCCcccccCcCccchhhhhhhHHHHHHHcCCCccCCCCEEEEEecCcc----ccC
Confidence 13568999998 8998 5565431 2456888999976 7899999999998 999
Q ss_pred HHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcC-C-hhhHHHHHHHcCeEEEc
Q 001292 430 YAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYG-F-NGDVNGVLLMADIVLYG 507 (1106)
Q Consensus 430 ~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG-~-~eDL~~LyaaADVfV~P 507 (1106)
++.+++|+..+.+ .+++ |+|+|.|+..+.+++++++++++ . +|.+.+ . .+++..+|+.||++++|
T Consensus 306 ~~~li~a~~~l~~---------~~~~-lvi~G~g~~~~~~~l~~~~~~~~--~-~v~~~~~~~~~~~~~~~~~aDv~l~p 372 (473)
T TIGR02095 306 VDLLLAALPELLE---------LGGQ-LVVLGTGDPELEEALRELAERYP--G-NVRVIIGYDEALAHLIYAGADFILMP 372 (473)
T ss_pred hHHHHHHHHHHHH---------cCcE-EEEECCCCHHHHHHHHHHHHHCC--C-cEEEEEcCCHHHHHHHHHhCCEEEeC
Confidence 9999999987763 2367 68899986445678888887654 3 566655 3 35578999999999999
Q ss_pred cCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccC------CeEEEEcCCCHHHHHHHHHHHHh----CcccHHHHHH
Q 001292 508 SSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEG------AQVIFFQKDNPEGLSRAFSLFIS----NGKLSKFART 577 (1106)
Q Consensus 508 S~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg------~nG~LV~~~D~eeLAeAI~~LLs----DpelRk~r~~ 577 (1106)
|.+| +||++++|||+||+|||+++.+|+.|+|.++ .+|+++++.|+++|+++|.++++ +++. .++
T Consensus 373 S~~E--~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~~~~~~~~---~~~ 447 (473)
T TIGR02095 373 SRFE--PCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRLYRQDPSL---WEA 447 (473)
T ss_pred CCcC--CcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHHhcCHHH---HHH
Confidence 9987 9999999999999999999999999999987 89999999999999999999888 7776 578
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 001292 578 VASAGRLHAKNMLALDCVTRYARILENV 605 (1106)
Q Consensus 578 mGe~Are~ake~fsee~v~~Y~eLyesl 605 (1106)
|++++.+ +++.|+.++++|.++|+++
T Consensus 448 ~~~~~~~--~~fsw~~~a~~~~~~Y~~l 473 (473)
T TIGR02095 448 LQKNAMS--QDFSWDKSAKQYVELYRSL 473 (473)
T ss_pred HHHHHhc--cCCCcHHHHHHHHHHHHhC
Confidence 8888753 4566778888999999863
No 22
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.97 E-value=3e-29 Score=284.68 Aligned_cols=336 Identities=13% Similarity=0.093 Sum_probs=245.8
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCch-----HHHHHH-hH-----------H----HHH----
Q 001292 224 RIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSH-----SLWEQI-AG-----------Q----ISI---- 278 (1106)
Q Consensus 224 RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~-----~i~r~l-g~-----------l----vki---- 278 (1106)
||++|.+.+..||.+..+.++++.|.+.|++|++++..+.... ..-..+ +. . ...
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEFFNVTKKFHNALQGADIELSEEEKEIYLEWNEENAERP 80 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEEecCCChhHHHHHHHhhHhhcCCCCCCCHHHHHHHHHHHHHHhccc
Confidence 6899999999999999999999999999999999987554311 000001 00 0 111
Q ss_pred hhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEE
Q 001292 279 LGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIV 358 (1106)
Q Consensus 279 Ir~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VI 358 (1106)
+...+||+||+|.+....+..... ..++|+|++.|+..... .. . ..++ ....++.+|.++
T Consensus 81 ~~~~~~Dvv~~h~~~~~~~~~~~~-----------~~~~~~i~~~H~~~~~~-~~--~---~~~~---~~~~~~~~d~~i 140 (372)
T cd03792 81 LLDLDADVVVIHDPQPLALPLFKK-----------KRGRPWIWRCHIDLSSP-NR--R---VWDF---LQPYIEDYDAAV 140 (372)
T ss_pred cccCCCCEEEECCCCchhHHHhhh-----------cCCCeEEEEeeeecCCC-cH--H---HHHH---HHHHHHhCCEEe
Confidence 224689999999876433322221 13789999999852111 00 0 0111 233466788888
Q ss_pred ecCCChhhhhcCCCCCCEEEeCCCCCCccccc--ccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHH
Q 001292 359 FPDYTLPMLYSVLDAGNFFVIPGSPADVWAVE--AYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHD 436 (1106)
Q Consensus 359 a~S~~~~~~~~gi~~~KI~VIpN~GVDl~~~e--~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA 436 (1106)
+++.... ...++..++ +||| |+|..... .+.+ ......+++++++++.++|+++||+.+ .||++.+++|
T Consensus 141 ~~~~~~~--~~~~~~~~~-vipn-gvd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~vgrl~~----~Kg~~~ll~a 211 (372)
T cd03792 141 FHLPEYV--PPQVPPRKV-IIPP-SIDPLSGKNRELSP-ADIEYILEKYGIDPERPYITQVSRFDP----WKDPFGVIDA 211 (372)
T ss_pred ecHHHhc--CCCCCCceE-EeCC-CCCCCccccCCCCH-HHHHHHHHHhCCCCCCcEEEEEecccc----ccCcHHHHHH
Confidence 7773221 234455555 8997 79862100 1111 234467888999889999999999988 9999999999
Q ss_pred HHHhHHHHHhhccCCCCeEEEEEEcCCCCc---cHHHHHHHHHHcCCCCCcEEEcCCh----hhHHHHHHHcCeEEEccC
Q 001292 437 VGPLLIKYARRNSVEGSFKFVFLCGNSTDG---YNDALQEVASRLGLLEHSVRHYGFN----GDVNGVLLMADIVLYGSS 509 (1106)
Q Consensus 437 ~k~Ll~k~aklk~~~PdikfLIIVG~Gper---Y~eeLkeLaeklGL~d~rV~flG~~----eDL~~LyaaADVfV~PS~ 509 (1106)
++.+.+. .|+++ |+++|.++.. +.+.++++.+..++.+ +|.|+|.. +++..+|++||++++||.
T Consensus 212 ~~~l~~~-------~~~~~-l~i~G~g~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~ 282 (372)
T cd03792 212 YRKVKER-------VPDPQ-LVLVGSGATDDPEGWIVYEEVLEYAEGDP-DIHVLTLPPVSDLEVNALQRASTVVLQKSI 282 (372)
T ss_pred HHHHHhh-------CCCCE-EEEEeCCCCCCchhHHHHHHHHHHhCCCC-CeEEEecCCCCHHHHHHHHHhCeEEEeCCC
Confidence 9877642 26777 6889988642 1234566666677776 89998854 689999999999999999
Q ss_pred CCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH-
Q 001292 510 QVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKN- 588 (1106)
Q Consensus 510 ~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake- 588 (1106)
.| |||++++||||||+|||+++.+++.+++.++.+|++++ ++++++.+|.++++++++ +++|++++++.+.+
T Consensus 283 ~E--g~g~~~lEA~a~G~Pvv~s~~~~~~~~i~~~~~g~~~~--~~~~~a~~i~~ll~~~~~---~~~~~~~a~~~~~~~ 355 (372)
T cd03792 283 RE--GFGLTVTEALWKGKPVIAGPVGGIPLQIEDGETGFLVD--TVEEAAVRILYLLRDPEL---RRKMGANAREHVREN 355 (372)
T ss_pred cc--CCCHHHHHHHHcCCCEEEcCCCCchhhcccCCceEEeC--CcHHHHHHHHHHHcCHHH---HHHHHHHHHHHHHHH
Confidence 87 99999999999999999999999999999999999886 577899999999999887 68999999998765
Q ss_pred hcHHHHHHHHHHHHHH
Q 001292 589 MLALDCVTRYARILEN 604 (1106)
Q Consensus 589 ~fsee~v~~Y~eLyes 604 (1106)
+.|+..+.+|.++|+.
T Consensus 356 ~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 356 FLITRHLKDYLYLISK 371 (372)
T ss_pred cCHHHHHHHHHHHHHh
Confidence 5556677799999986
No 23
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.97 E-value=4e-29 Score=272.89 Aligned_cols=343 Identities=15% Similarity=0.159 Sum_probs=247.8
Q ss_pred EEEEEeCCC--CCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHHH------------------HHh-------HHH
Q 001292 224 RIGLILGNM--AKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLWE------------------QIA-------GQI 276 (1106)
Q Consensus 224 RIalVlg~L--~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r------------------~lg-------~lv 276 (1106)
||++|++.+ ..||.+..+..+++.|.+.|++|++++..++....... ... ...
T Consensus 1 kIl~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (375)
T cd03821 1 KILHVIPSFDPKYGGPVRVVLNLSKALAKLGHEVTVATTDAGGDPLLVALNGVPVKLFSINVAYGLNLARYLFPPSLLAW 80 (375)
T ss_pred CeEEEcCCCCcccCCeehHHHHHHHHHHhcCCcEEEEecCCCCccchhhccCceeeecccchhhhhhhhhhccChhHHHH
Confidence 689999998 56899999999999999999999999986543111100 000 011
Q ss_pred HHhhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccE
Q 001292 277 SILGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNV 356 (1106)
Q Consensus 277 kiIr~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~ 356 (1106)
......++|+|+.+............... ..++|+|++.|+.........................+..++.
T Consensus 81 ~~~~~~~~dii~~~~~~~~~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (375)
T cd03821 81 LRLNIREADIVHVHGLWSYPSLAAARAAR--------KYGIPYVVSPHGMLDPWALPHKALKKRLAWFLFERRLLQAAAA 152 (375)
T ss_pred HHHhCCCCCEEEEecccchHHHHHHHHHH--------HhCCCEEEEccccccccccccchhhhHHHHHHHHHHHHhcCCE
Confidence 22233679999987643322221111111 2578999999984221110110000000011112345678888
Q ss_pred EEecCCChhhh-hcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHH
Q 001292 357 IVFPDYTLPML-YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMH 435 (1106)
Q Consensus 357 VIa~S~~~~~~-~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLe 435 (1106)
+++.+...... ....+..++.+||| |+|. +.+.+...... |..++...+.++++++|++.. .||++.+++
T Consensus 153 i~~~s~~~~~~~~~~~~~~~~~vi~~-~~~~---~~~~~~~~~~~-~~~~~~~~~~~~i~~~G~~~~----~K~~~~li~ 223 (375)
T cd03821 153 VHATSEQEAAEIRRLGLKAPIAVIPN-GVDI---PPFAALPSRGR-RRKFPILPDKRIILFLGRLHP----KKGLDLLIE 223 (375)
T ss_pred EEECCHHHHHHHHhhCCcccEEEcCC-CcCh---hccCcchhhhh-hhhccCCCCCcEEEEEeCcch----hcCHHHHHH
Confidence 88887544433 34456678999998 7987 55555433333 677788888999999999887 899999999
Q ss_pred HHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChh--hHHHHHHHcCeEEEccCCCCC
Q 001292 436 DVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNG--DVNGVLLMADIVLYGSSQVEQ 513 (1106)
Q Consensus 436 A~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~e--DL~~LyaaADVfV~PS~~EeE 513 (1106)
|+..+.++ +++++ ++++|.++..+...++.+++++++.+ +|.++|+.+ ++..+|+.||++++||..|
T Consensus 224 a~~~l~~~-------~~~~~-l~i~G~~~~~~~~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~adv~v~ps~~e-- 292 (375)
T cd03821 224 AFAKLAER-------FPDWH-LVIAGPDEGGYRAELKQIAAALGLED-RVTFTGMLYGEDKAAALADADLFVLPSHSE-- 292 (375)
T ss_pred HHHHhhhh-------cCCeE-EEEECCCCcchHHHHHHHHHhcCccc-eEEEcCCCChHHHHHHHhhCCEEEeccccC--
Confidence 99887643 37887 68899887666677777778899987 999999764 8999999999999999986
Q ss_pred CCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcH-H
Q 001292 514 GFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLA-L 592 (1106)
Q Consensus 514 GFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fs-e 592 (1106)
+||++++||||||+|||+++.++..+++.+ .+|++++ .++++++++|.+++++++. ..++++++++.+.+.|+ +
T Consensus 293 ~~~~~~~Eama~G~PvI~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~i~~l~~~~~~---~~~~~~~~~~~~~~~~s~~ 367 (375)
T cd03821 293 NFGIVVAEALACGTPVVTTDKVPWQELIEY-GCGWVVD-DDVDALAAALRRALELPQR---LKAMGENGRALVEERFSWT 367 (375)
T ss_pred CCCcHHHHHHhcCCCEEEcCCCCHHHHhhc-CceEEeC-CChHHHHHHHHHHHhCHHH---HHHHHHHHHHHHHHhcCHH
Confidence 999999999999999999999999999988 7888887 4569999999999999976 68899999999656555 5
Q ss_pred HHHHHHH
Q 001292 593 DCVTRYA 599 (1106)
Q Consensus 593 e~v~~Y~ 599 (1106)
..++.|.
T Consensus 368 ~~~~~~~ 374 (375)
T cd03821 368 AIAQQLL 374 (375)
T ss_pred HHHHHhh
Confidence 5555654
No 24
>PLN02939 transferase, transferring glycosyl groups
Probab=99.97 E-value=4.8e-29 Score=306.40 Aligned_cols=370 Identities=14% Similarity=0.113 Sum_probs=268.4
Q ss_pred cccccCCCCCC-CCCCEEEEEeCCCCC----ChhHHHHHHHHHHHHHCCCEEEEEEcCCCCch-----------------
Q 001292 209 LDGLRSTPRFG-VRPPRIGLILGNMAK----DSRSLLLITVVKNLQKLGYVFKIYAVRSGNSH----------------- 266 (1106)
Q Consensus 209 ~~ha~Sv~r~g-~r~~RIalVlg~L~~----gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~----------------- 266 (1106)
+.-.....+.+ .++++|++|...+.+ ||-.-++..|.++|++.|++|.|+.+..+...
T Consensus 467 ~~~~~~~~~~~~~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~ 546 (977)
T PLN02939 467 VENFLKLTLSGTSSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYDCMQYDQIRNLKVLDVVVESY 546 (977)
T ss_pred HHHHHHhccCCCCCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCcccChhhhhcccccceEEEEe
Confidence 33334433333 557899999988766 89999999999999999999999887432110
Q ss_pred --------------------------H---HH-H-----------HH----hHHHHHhhc--cCccEEEEccccHHHHHH
Q 001292 267 --------------------------S---LW-E-----------QI----AGQISILGQ--EQYSLIDWSIFDGIIADS 299 (1106)
Q Consensus 267 --------------------------~---i~-r-----------~l----g~lvkiIr~--~~pDiIh~~~~~~i~v~~ 299 (1106)
. .+ + .+ .+...++.. .+||+||+|.|.+.++..
T Consensus 547 ~~g~~~~~~v~~~~~~GV~vyfId~~~~~~fF~R~~iYg~~Dn~~RF~~FsrAaLe~~~~~~~~PDIIH~HDW~TaLV~p 626 (977)
T PLN02939 547 FDGNLFKNKIWTGTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALELLYQSGKKPDIIHCHDWQTAFVAP 626 (977)
T ss_pred ecCceeEEEEEEEEECCeeEEEEecCCchhccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHH
Confidence 0 00 0 00 002233332 589999999999988744
Q ss_pred HHHHHhhhhcccCCCCCCcEEEEEcCCcccccchh--hh-----------hhhHH----hHHHHHHHHhccccEEEecCC
Q 001292 300 LEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPV--YV-----------ERGFQ----NLLSYWKSVFSRVNVIVFPDY 362 (1106)
Q Consensus 300 La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~--Y~-----------~~gle----klis~~~~~l~~AD~VIa~S~ 362 (1106)
+..+... .....++|+|+|+||......... .. ..+++ ..+...+..+..+|.|+++|.
T Consensus 627 ll~~~y~----~~~~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~~~~~iN~LK~GIv~AD~VtTVSp 702 (977)
T PLN02939 627 LYWDLYA----PKGFNSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDNAHGRINVVKGAIVYSNIVTTVSP 702 (977)
T ss_pred HHHHHHh----hccCCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhccCCchHHHHHHHHhCCeeEeeeH
Confidence 3332110 112367899999999543221110 00 00110 112333445667999999986
Q ss_pred Chhhh---h--------cCCCCCCEEEeCCCCCCcccccccCcch------------------hHHHHHHHcCCCC---C
Q 001292 363 TLPML---Y--------SVLDAGNFFVIPGSPADVWAVEAYSKSH------------------EKYQLRKENGFLK---D 410 (1106)
Q Consensus 363 ~~~~~---~--------~gi~~~KI~VIpN~GVDl~~~e~F~ps~------------------s~~~LR~~lGL~~---d 410 (1106)
..... . ......++.+|+| |||. +.|.|.. .+..+++++|+++ +
T Consensus 703 tYA~EI~te~G~GL~~~L~~~~~Kl~gIlN-GID~---e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d 778 (977)
T PLN02939 703 TYAQEVRSEGGRGLQDTLKFHSKKFVGILN-GIDT---DTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSSADAS 778 (977)
T ss_pred HHHHHHHHHhccchHHHhccccCCceEEec-ceeh---hhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCccccc
Confidence 65433 1 2345678999998 8998 5666542 2567899999974 5
Q ss_pred cEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCc-cHHHHHHHHHHcCCCCCcEEEcC
Q 001292 411 EIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDG-YNDALQEVASRLGLLEHSVRHYG 489 (1106)
Q Consensus 411 ~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~Gper-Y~eeLkeLaeklGL~d~rV~flG 489 (1106)
.++|++|||+.+ +||++.+++|+..+.. ++++ |+|+|+|++. |.+.++++++++++.+ +|.|+|
T Consensus 779 ~pLIg~VGRL~~----QKGiDlLleA~~~Ll~---------~dvq-LVIvGdGp~~~~e~eL~~La~~l~l~d-rV~FlG 843 (977)
T PLN02939 779 QPLVGCITRLVP----QKGVHLIRHAIYKTAE---------LGGQ-FVLLGSSPVPHIQREFEGIADQFQSNN-NIRLIL 843 (977)
T ss_pred ceEEEEeecCCc----ccChHHHHHHHHHHhh---------cCCE-EEEEeCCCcHHHHHHHHHHHHHcCCCC-eEEEEe
Confidence 689999999998 9999999999977652 3566 6889999752 3478889999999887 899999
Q ss_pred Chhh--HHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhcc---------CCeEEEEcCCCHHHH
Q 001292 490 FNGD--VNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAE---------GAQVIFFQKDNPEGL 558 (1106)
Q Consensus 490 ~~eD--L~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~D---------g~nG~LV~~~D~eeL 558 (1106)
..++ ...+|+.||+||+||.+| +||++++|||+||+|||++++||+.++|.+ +.+|+++++.|+++|
T Consensus 844 ~~de~lah~IYAaADIFLmPSr~E--PfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~eaL 921 (977)
T PLN02939 844 KYDEALSHSIYAASDMFIIPSMFE--PCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPDEQGL 921 (977)
T ss_pred ccCHHHHHHHHHhCCEEEECCCcc--CCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCCCHHHH
Confidence 6544 468999999999999997 999999999999999999999999999865 579999999999999
Q ss_pred HHHHHHHHh----CcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcC
Q 001292 559 SRAFSLFIS----NGKLSKFARTVASAGRLHAKNMLALDCVTRYARILENVLNF 608 (1106)
Q Consensus 559 AeAI~~LLs----DpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLyeslLk~ 608 (1106)
+++|.++++ |++. ..+|+.++. ...+.|..++.+|.++|+.++..
T Consensus 922 a~AL~rAL~~~~~dpe~---~~~L~~~am--~~dFSWe~~A~qYeeLY~~ll~~ 970 (977)
T PLN02939 922 NSALERAFNYYKRKPEV---WKQLVQKDM--NIDFSWDSSASQYEELYQRAVAR 970 (977)
T ss_pred HHHHHHHHHHhccCHHH---HHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHHh
Confidence 999998875 6776 577777664 35566777788999999998764
No 25
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.97 E-value=5.2e-29 Score=282.09 Aligned_cols=339 Identities=17% Similarity=0.170 Sum_probs=243.8
Q ss_pred CEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCc-------h--------------HHHHH-------HhH
Q 001292 223 PRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNS-------H--------------SLWEQ-------IAG 274 (1106)
Q Consensus 223 ~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~-------~--------------~i~r~-------lg~ 274 (1106)
+|||++++++..||.+..+..|+++|.++||+|+|+|..++.. . ..... +..
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 80 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSHHDPSHCFEETKDGTLPVRVRGDWLPRSIFGRFHILCAYLRM 80 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCCCCchhcchhccCCeeEEEEEeEEEcchhhHhHHHHHHHHHH
Confidence 5899999999999999999999999999999999998643210 0 00000 000
Q ss_pred HH-----HHhhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcc--cccchhhhhhhH-HhHHHH
Q 001292 275 QI-----SILGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSL--ANRLPVYVERGF-QNLLSY 346 (1106)
Q Consensus 275 lv-----kiIr~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~L--s~r~~~Y~~~gl-eklis~ 346 (1106)
.. ..+...++|+||.+.....+. .+ . .. .+.|+|+++|.... ..+.. ....+ ......
T Consensus 81 ~~~~~~~~~~~~~~~Dvi~~~~~~~~~~-~~-~-~~---------~~~~~i~~~h~~~~~~~~~~~--~~~~~~~~~~~~ 146 (392)
T cd03805 81 LYLALYLLLLPDEKYDVFIVDQVSACVP-LL-K-LF---------SPSKILFYCHFPDQLLAQRGS--LLKRLYRKPFDW 146 (392)
T ss_pred HHHHHHHHhcccCCCCEEEEcCcchHHH-HH-H-Hh---------cCCcEEEEEecChHHhcCCCc--HHHHHHHHHHHH
Confidence 00 134557899999876543322 11 1 11 23799999885211 11100 00000 111111
Q ss_pred H-HHHhccccEEEecCCChhhh----hcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccC
Q 001292 347 W-KSVFSRVNVIVFPDYTLPML----YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSF 421 (1106)
Q Consensus 347 ~-~~~l~~AD~VIa~S~~~~~~----~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~ 421 (1106)
+ ...++.+|.|++.+...... +......++.+|+| |+|. +.|.+..... .+......++.++++++||+.
T Consensus 147 ~e~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~n-~vd~---~~~~~~~~~~-~~~~~~~~~~~~~i~~~grl~ 221 (392)
T cd03805 147 LEEFTTGMADKIVVNSNFTASVFKKTFPSLAKNPREVVYP-CVDT---DSFESTSEDP-DPGLLIPKSGKKTFLSINRFE 221 (392)
T ss_pred HHHHHhhCceEEEEcChhHHHHHHHHhcccccCCcceeCC-CcCH---HHcCcccccc-cccccccCCCceEEEEEeeec
Confidence 1 23578899999998766554 12233334458887 7987 5565432221 233345567888999999988
Q ss_pred ccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCc------cHHHHHHHHHH-cCCCCCcEEEcCCh--h
Q 001292 422 FYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDG------YNDALQEVASR-LGLLEHSVRHYGFN--G 492 (1106)
Q Consensus 422 ~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~Gper------Y~eeLkeLaek-lGL~d~rV~flG~~--e 492 (1106)
+ .||++.+++|+.++.++.. ..|+++ |+++|.++.+ |.+++++++++ +++.+ +|.|+|+. +
T Consensus 222 ~----~Kg~~~ll~a~~~l~~~~~----~~~~~~-l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~-~V~f~g~~~~~ 291 (392)
T cd03805 222 R----KKNIALAIEAFAILKDKLA----EFKNVR-LVIAGGYDPRVAENVEYLEELQRLAEELLLLED-QVIFLPSISDS 291 (392)
T ss_pred c----cCChHHHHHHHHHHHhhcc----cccCeE-EEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCc-eEEEeCCCChH
Confidence 8 8999999999988764220 126787 6888887652 45788999998 89987 99999965 5
Q ss_pred hHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccH
Q 001292 493 DVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLS 572 (1106)
Q Consensus 493 DL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelR 572 (1106)
++..+|+.||++++||..| +||++++||||||+|||+++.++..|++.++.+|++++. |+++++++|..++++++.
T Consensus 292 ~~~~~l~~ad~~l~~s~~E--~~g~~~lEAma~G~PvI~s~~~~~~e~i~~~~~g~~~~~-~~~~~a~~i~~l~~~~~~- 367 (392)
T cd03805 292 QKELLLSSARALLYTPSNE--HFGIVPLEAMYAGKPVIACNSGGPLETVVDGETGFLCEP-TPEEFAEAMLKLANDPDL- 367 (392)
T ss_pred HHHHHHhhCeEEEECCCcC--CCCchHHHHHHcCCCEEEECCCCcHHHhccCCceEEeCC-CHHHHHHHHHHHHhChHH-
Confidence 6789999999999999886 999999999999999999999999999999999999975 899999999999999987
Q ss_pred HHHHHHHHHHHHHHHHhcHHHHHH
Q 001292 573 KFARTVASAGRLHAKNMLALDCVT 596 (1106)
Q Consensus 573 k~r~~mGe~Are~ake~fsee~v~ 596 (1106)
..+|+++|++.+.+.|+.+.+.
T Consensus 368 --~~~~~~~a~~~~~~~~s~~~~~ 389 (392)
T cd03805 368 --ADRMGAAGRKRVKEKFSTEAFA 389 (392)
T ss_pred --HHHHHHHHHHHHHHhcCHHHHh
Confidence 6889999999998877665543
No 26
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.97 E-value=2e-29 Score=297.59 Aligned_cols=338 Identities=13% Similarity=0.147 Sum_probs=244.6
Q ss_pred EEEEEeCCCCCChhHHHHHHHH----HHHHHCCC--------EEEEEEc--CCCCchHH---------------------
Q 001292 224 RIGLILGNMAKDSRSLLLITVV----KNLQKLGY--------VFKIYAV--RSGNSHSL--------------------- 268 (1106)
Q Consensus 224 RIalVlg~L~~gGesl~vv~La----kaLqe~Gy--------eVtV~t~--~dg~~~~i--------------------- 268 (1106)
++|++.++++.+|.+.+++.++ +.+++.|- +|.++|- .++...+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (578)
T PRK15490 163 RLALCTGSLGSGGAERQISRLAIEIARKYRQKGKIGGLKVEEPVELIIRSLTPELRQDFFLKEVLEEQVEVLEIAKITGN 242 (578)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHHhcccccccccccceeEEEeecCcccCcchhHHHHHhcCCceEEeeccchh
Confidence 4899999999999999888544 44444433 5666654 22211000
Q ss_pred -----------HH------------HHhHHHHHhhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEE-Ec
Q 001292 269 -----------WE------------QIAGQISILGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWI-IQ 324 (1106)
Q Consensus 269 -----------~r------------~lg~lvkiIr~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~t-IH 324 (1106)
++ .+..+..+++..++|+||.+.....++..+..+. .++|+|++ .|
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ir~~rpDIVHt~~~~a~l~g~laA~l----------agvpviv~~~h 312 (578)
T PRK15490 243 LFDDATIESPELRLLLSHLPPVCKYGIKHLVPHLCERKLDYLSVWQDGACLMIALAALI----------AGVPRIQLGLR 312 (578)
T ss_pred hhhhccccchHHHHHHhcCChHHHHHHHHHHHHHHHcCCCEEEEcCcccHHHHHHHHHh----------cCCCEEEEeec
Confidence 00 1122678889999999999998887787777754 57898755 55
Q ss_pred CCcccccchhhhhhhHHhHHHHHHH-----H-hccccEEEecCCChhhh---hcCCCCCCEEEeCCCCCCcccccccCcc
Q 001292 325 EDSLANRLPVYVERGFQNLLSYWKS-----V-FSRVNVIVFPDYTLPML---YSVLDAGNFFVIPGSPADVWAVEAYSKS 395 (1106)
Q Consensus 325 na~Ls~r~~~Y~~~gleklis~~~~-----~-l~~AD~VIa~S~~~~~~---~~gi~~~KI~VIpN~GVDl~~~e~F~ps 395 (1106)
+. ...... ..+...|.. . +..+| ++..+...... +.+++++++.+||| |+|. ..|.+.
T Consensus 313 ~~--~~~~~~------r~~~~e~~~~~~a~~i~~~sd-~v~~s~~v~~~l~~~lgip~~KI~VIyN-GVD~---~rf~p~ 379 (578)
T PRK15490 313 GL--PPVVRK------RLFKPEYEPLYQALAVVPGVD-FMSNNHCVTRHYADWLKLEAKHFQVVYN-GVLP---PSTEPS 379 (578)
T ss_pred cc--CCcchh------hHHHHHHHHhhhhceeEecch-hhhccHHHHHHHHHHhCCCHHHEEEEeC-Ccch---hhcCcc
Confidence 41 110000 111111111 1 22222 23333222221 34788999999998 8998 566664
Q ss_pred hhH-HHHHH--HcCCCCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHH
Q 001292 396 HEK-YQLRK--ENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQ 472 (1106)
Q Consensus 396 ~s~-~~LR~--~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLk 472 (1106)
... ...+. ..+++++.++|+++||+.. .|++..+++++..+.+. .|+++ |+|+|+|+.+ ++++
T Consensus 380 ~~~~~~~r~~~~~~l~~~~~vIg~VgRl~~----~Kg~~~LI~A~a~llk~-------~pdir-LvIVGdG~~~--eeLk 445 (578)
T PRK15490 380 SEVPHKIWQQFTQKTQDADTTIGGVFRFVG----DKNPFAWIDFAARYLQH-------HPATR-FVLVGDGDLR--AEAQ 445 (578)
T ss_pred chhhHHHHHHhhhccCCCCcEEEEEEEEeh----hcCHHHHHHHHHHHHhH-------CCCeE-EEEEeCchhH--HHHH
Confidence 211 12333 2345567789999999887 99999999999877643 27888 6889999875 8999
Q ss_pred HHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcC
Q 001292 473 EVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQK 552 (1106)
Q Consensus 473 eLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~ 552 (1106)
++++++|+.+ +|+|+|+.+|+..+|+.+|++|+||.+| +||++++||||||+|||+++.+|++|+|.++.+|+++++
T Consensus 446 ~la~elgL~d-~V~FlG~~~Dv~~~LaaADVfVlPS~~E--Gfp~vlLEAMA~GlPVVATdvGG~~EiV~dG~nG~LVp~ 522 (578)
T PRK15490 446 KRAEQLGILE-RILFVGASRDVGYWLQKMNVFILFSRYE--GLPNVLIEAQMVGVPVISTPAGGSAECFIEGVSGFILDD 522 (578)
T ss_pred HHHHHcCCCC-cEEECCChhhHHHHHHhCCEEEEccccc--CccHHHHHHHHhCCCEEEeCCCCcHHHcccCCcEEEECC
Confidence 9999999987 9999999999999999999999999987 999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHH---HHHhCcccHHHHHHHHHHHHHHHHHhcHHH-HHHHHHHHHHH
Q 001292 553 DNPEGLSRAFS---LFISNGKLSKFARTVASAGRLHAKNMLALD-CVTRYARILEN 604 (1106)
Q Consensus 553 ~D~eeLAeAI~---~LLsDpelRk~r~~mGe~Are~ake~fsee-~v~~Y~eLyes 604 (1106)
.|++++++++. .+.++.+. ...|+++|++.++++|+.+ ++.+|.++|.+
T Consensus 523 ~D~~aLa~ai~lA~aL~~ll~~---~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 523 AQTVNLDQACRYAEKLVNLWRS---RTGICQQTQSFLQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred CChhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 99999888873 34443332 4578999999998877755 55599999986
No 27
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.97 E-value=6.5e-29 Score=281.57 Aligned_cols=326 Identities=12% Similarity=0.118 Sum_probs=237.5
Q ss_pred CEEEEEeCCCC-CChhHHHHHHHHHHHHHC--CCEEEEEEcCCCCchHHH--------------------HHHhHHHHHh
Q 001292 223 PRIGLILGNMA-KDSRSLLLITVVKNLQKL--GYVFKIYAVRSGNSHSLW--------------------EQIAGQISIL 279 (1106)
Q Consensus 223 ~RIalVlg~L~-~gGesl~vv~LakaLqe~--GyeVtV~t~~dg~~~~i~--------------------r~lg~lvkiI 279 (1106)
+||+++...+. .||.+..+..+++.|.+. |++|.+++.......... .....+.+++
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 80 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDKMDKAWLKEIKYAQSFSNIKLSFLRRAKHVYNFSKWL 80 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCChHHHHhcchhcccccchhhhhcccHHHHHHHHHH
Confidence 58999988775 499999999999999999 899998887543211000 0112245678
Q ss_pred hccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEe
Q 001292 280 GQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVF 359 (1106)
Q Consensus 280 r~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa 359 (1106)
+..++|+||++.....++..+..+.. ....+++.+.|...... ..+ . + ..+..+|.+++
T Consensus 81 ~~~~~Dii~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~h~~~~~~-~~~-------~----~-~~~~~~d~~i~ 139 (359)
T PRK09922 81 KETQPDIVICIDVISCLYANKARKKS--------GKQFKIFSWPHFSLDHK-KHA-------E----C-KKITCADYHLA 139 (359)
T ss_pred HhcCCCEEEEcCHHHHHHHHHHHHHh--------CCCCeEEEEecCccccc-chh-------h----h-hhhhcCCEEEE
Confidence 88999999999876666555555432 13345666667532111 000 0 1 11368999999
Q ss_pred cCCChhhh--hcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHH
Q 001292 360 PDYTLPML--YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDV 437 (1106)
Q Consensus 360 ~S~~~~~~--~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~ 437 (1106)
.|...... ..+++.+++.+||| |+|. +.+.... ....+.++++++||+.. +++|+++.+++|+
T Consensus 140 ~S~~~~~~~~~~~~~~~ki~vi~N-~id~---~~~~~~~---------~~~~~~~~i~~~Grl~~--~~~k~~~~l~~a~ 204 (359)
T PRK09922 140 ISSGIKEQMMARGISAQRISVIYN-PVEI---KTIIIPP---------PERDKPAVFLYVGRLKF--EGQKNVKELFDGL 204 (359)
T ss_pred cCHHHHHHHHHcCCCHHHEEEEcC-CCCH---HHccCCC---------cccCCCcEEEEEEEEec--ccCcCHHHHHHHH
Confidence 88765544 44667778999998 7885 2322110 01134678999999864 2378999999999
Q ss_pred HHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCCh----hhHHHHHHHcCeEEEccCCCCC
Q 001292 438 GPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFN----GDVNGVLLMADIVLYGSSQVEQ 513 (1106)
Q Consensus 438 k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~----eDL~~LyaaADVfV~PS~~EeE 513 (1106)
..+. ++++ ++++|+|++. +.++++++++++.+ +|+|+|+. +++..+|+.||++|+||..|
T Consensus 205 ~~~~----------~~~~-l~ivG~g~~~--~~l~~~~~~~~l~~-~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~E-- 268 (359)
T PRK09922 205 SQTT----------GEWQ-LHIIGDGSDF--EKCKAYSRELGIEQ-RIIWHGWQSQPWEVVQQKIKNVSALLLTSKFE-- 268 (359)
T ss_pred HhhC----------CCeE-EEEEeCCccH--HHHHHHHHHcCCCC-eEEEecccCCcHHHHHHHHhcCcEEEECCccc--
Confidence 6552 3567 6889999976 89999999999987 99999965 45788899999999999986
Q ss_pred CCcHHHHHHHHhCCCEEecC-CCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHH
Q 001292 514 GFPSLIVRAMTFGIPVITPD-FPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLAL 592 (1106)
Q Consensus 514 GFGlvLLEAMA~G~PVIASD-~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fse 592 (1106)
|||++++||||||+|||+++ .+|..|+|.++.+|++++++|+++++++|..+++|++.+ ....+.++++++.++.|..
T Consensus 269 gf~~~~lEAma~G~Pvv~s~~~~g~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~ 347 (359)
T PRK09922 269 GFPMTLLEAMSYGIPCISSDCMSGPRDIIKPGLNGELYTPGNIDEFVGKLNKVISGEVKY-QHDAIPNSIERFYEVLYFK 347 (359)
T ss_pred CcChHHHHHHHcCCCEEEeCCCCChHHHccCCCceEEECCCCHHHHHHHHHHHHhCcccC-CHHHHHHHHHHhhHHHHHH
Confidence 99999999999999999999 899999999999999999999999999999999999853 1344455555544444433
Q ss_pred HHHHHHHHHHHHH
Q 001292 593 DCVTRYARILENV 605 (1106)
Q Consensus 593 e~v~~Y~eLyesl 605 (1106)
++.++|+.+
T Consensus 348 ----~~~~~~~~~ 356 (359)
T PRK09922 348 ----NLNNALFSK 356 (359)
T ss_pred ----HHHHHHHHH
Confidence 555555544
No 28
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.97 E-value=2.3e-28 Score=280.56 Aligned_cols=316 Identities=17% Similarity=0.219 Sum_probs=235.4
Q ss_pred CCChhHHHHHHHHHHHHHCCCEEEEEEcCCCC-c-h----------------------HHHH------HHhHHHHHh---
Q 001292 233 AKDSRSLLLITVVKNLQKLGYVFKIYAVRSGN-S-H----------------------SLWE------QIAGQISIL--- 279 (1106)
Q Consensus 233 ~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~-~-~----------------------~i~r------~lg~lvkiI--- 279 (1106)
..||.+..+..+++.|.. +|+++|...-+ . . ..|. ....+..++
T Consensus 19 ~~g~ve~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (380)
T PRK15484 19 GAAAVETWIYQVAKRTSI---PNRIACIKNPGYPEYTKVNDNCDIHYIGFSRIYKRLFQKWTRLDPLPYSQRILNIAHKF 95 (380)
T ss_pred cccHHHHHHHHhhhhccC---CeeEEEecCCCCCchhhccCCCceEEEEeccccchhhhhhhccCchhHHHHHHHHHHhc
Confidence 348999999999999944 88888874321 0 0 0000 001122222
Q ss_pred hccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEe
Q 001292 280 GQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVF 359 (1106)
Q Consensus 280 r~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa 359 (1106)
+...+++||+|+... +...+..+ ..+.|+|++.|+.. . . ..+..++.+++
T Consensus 96 ~~~~~~vi~v~~~~~-~~~~~~~~----------~~~~~~v~~~h~~~--------~----~-------~~~~~~~~ii~ 145 (380)
T PRK15484 96 TITKDSVIVIHNSMK-LYRQIRER----------APQAKLVMHMHNAF--------E----P-------ELLDKNAKIIV 145 (380)
T ss_pred CCCCCcEEEEeCcHH-hHHHHHhh----------CCCCCEEEEEeccc--------C----h-------hHhccCCEEEE
Confidence 224588999988554 33333332 25679999999851 0 0 12346788899
Q ss_pred cCCChhhh-hcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHH
Q 001292 360 PDYTLPML-YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVG 438 (1106)
Q Consensus 360 ~S~~~~~~-~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k 438 (1106)
+|...... ....+..++.+||| |+|. +.|.+.. ...+++.++++++.++|+++||+.+ .||++.+++|+.
T Consensus 146 ~S~~~~~~~~~~~~~~~i~vIpn-gvd~---~~~~~~~-~~~~~~~~~~~~~~~~il~~Grl~~----~Kg~~~Li~A~~ 216 (380)
T PRK15484 146 PSQFLKKFYEERLPNADISIVPN-GFCL---ETYQSNP-QPNLRQQLNISPDETVLLYAGRISP----DKGILLLMQAFE 216 (380)
T ss_pred cCHHHHHHHHhhCCCCCEEEecC-CCCH---HHcCCcc-hHHHHHHhCCCCCCeEEEEeccCcc----ccCHHHHHHHHH
Confidence 88776655 33456678999998 7997 5665532 3456778898888899999999988 899999999998
Q ss_pred HhHHHHHhhccCCCCeEEEEEEcCCCCc-------cHHHHHHHHHHcCCCCCcEEEcCCh--hhHHHHHHHcCeEEEccC
Q 001292 439 PLLIKYARRNSVEGSFKFVFLCGNSTDG-------YNDALQEVASRLGLLEHSVRHYGFN--GDVNGVLLMADIVLYGSS 509 (1106)
Q Consensus 439 ~Ll~k~aklk~~~PdikfLIIVG~Gper-------Y~eeLkeLaeklGL~d~rV~flG~~--eDL~~LyaaADVfV~PS~ 509 (1106)
.+.++ .|+++ |+|+|+++.. |.+.+++++++++ + +|.|+|.. +++..+|+.||++|+||.
T Consensus 217 ~l~~~-------~p~~~-lvivG~g~~~~~~~~~~~~~~l~~~~~~l~--~-~v~~~G~~~~~~l~~~~~~aDv~v~pS~ 285 (380)
T PRK15484 217 KLATA-------HSNLK-LVVVGDPTASSKGEKAAYQKKVLEAAKRIG--D-RCIMLGGQPPEKMHNYYPLADLVVVPSQ 285 (380)
T ss_pred HHHHh-------CCCeE-EEEEeCCccccccchhHHHHHHHHHHHhcC--C-cEEEeCCCCHHHHHHHHHhCCEEEeCCC
Confidence 87643 38888 6888887531 3446666776655 4 79999964 689999999999999998
Q ss_pred CCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEE-EEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Q 001292 510 QVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVI-FFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKN 588 (1106)
Q Consensus 510 ~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~-LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake 588 (1106)
++ |+||++++||||||+|||+++.||++|++.++.+|+ ++++.|+++|+++|.++++|+++ .+|++++++.+.+
T Consensus 286 ~~-E~f~~~~lEAma~G~PVI~s~~gg~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d~~~----~~~~~~ar~~~~~ 360 (380)
T PRK15484 286 VE-EAFCMVAVEAMAAGKPVLASTKGGITEFVLEGITGYHLAEPMTSDSIISDINRTLADPEL----TQIAEQAKDFVFS 360 (380)
T ss_pred Cc-cccccHHHHHHHcCCCEEEeCCCCcHhhcccCCceEEEeCCCCHHHHHHHHHHHHcCHHH----HHHHHHHHHHHHH
Confidence 63 599999999999999999999999999999999998 56789999999999999999974 5799999988766
Q ss_pred hcH-HHHHHHHHHHHHHHh
Q 001292 589 MLA-LDCVTRYARILENVL 606 (1106)
Q Consensus 589 ~fs-ee~v~~Y~eLyeslL 606 (1106)
.|+ +.++.+|+++|++..
T Consensus 361 ~fsw~~~a~~~~~~l~~~~ 379 (380)
T PRK15484 361 KYSWEGVTQRFEEQIHNWF 379 (380)
T ss_pred hCCHHHHHHHHHHHHHHhc
Confidence 655 566669999998753
No 29
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=1.8e-28 Score=268.99 Aligned_cols=337 Identities=17% Similarity=0.195 Sum_probs=248.9
Q ss_pred EEEEEeCCCCC--ChhHHHHHHHHHHHHHCCCEEEEEEcCCCCch---------------------HHHHHHhHHHHHhh
Q 001292 224 RIGLILGNMAK--DSRSLLLITVVKNLQKLGYVFKIYAVRSGNSH---------------------SLWEQIAGQISILG 280 (1106)
Q Consensus 224 RIalVlg~L~~--gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~---------------------~i~r~lg~lvkiIr 280 (1106)
||++|.+...+ +|.+..+..++++|.+.||+|++++....... ........+...++
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPARVVPVPSVPLPGYPEIRLALPPRRRVRRLLD 80 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCCCceeecccccCcccceEecccchhhHHHHHH
Confidence 57888877755 78899999999999999999999987542200 00001112455566
Q ss_pred ccCccEEEEccccHHH-HHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhH-HHHHHHHhccccEEE
Q 001292 281 QEQYSLIDWSIFDGII-ADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNL-LSYWKSVFSRVNVIV 358 (1106)
Q Consensus 281 ~~~pDiIh~~~~~~i~-v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~glekl-is~~~~~l~~AD~VI 358 (1106)
..++|+||++...... ......+ ..++|+++++|+... .....+......+. .......++.+|.++
T Consensus 81 ~~~pdii~~~~~~~~~~~~~~~~~----------~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~ 149 (364)
T cd03814 81 AFAPDVVHIATPGPLGLAALRAAR----------RLGIPVVTSYHTDFP-EYLRYYGLGPLSWLAWAYLRWFHNRADRVL 149 (364)
T ss_pred hcCCCEEEEeccchhhHHHHHHHH----------HcCCCEEEEEecChH-HHhhhcccchHhHhhHHHHHHHHHhCCEEE
Confidence 7899999987544322 2222221 267999999998421 11110000011111 122234567899999
Q ss_pred ecCCChhhhhcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHH
Q 001292 359 FPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVG 438 (1106)
Q Consensus 359 a~S~~~~~~~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k 438 (1106)
+++.............++.++++ |+|. +.|.+.......+..++ ..+.++++++|++.. .|+.+.++++++
T Consensus 150 ~~s~~~~~~~~~~~~~~~~~~~~-g~~~---~~~~~~~~~~~~~~~~~-~~~~~~i~~~G~~~~----~k~~~~~i~~~~ 220 (364)
T cd03814 150 VPSPSLADELRARGFRRVRLWPR-GVDT---ELFHPRRRDEALRARLG-PPDRPVLLYVGRLAP----EKNLEALLDADL 220 (364)
T ss_pred eCCHHHHHHHhccCCCceeecCC-Cccc---cccCcccccHHHHHHhC-CCCCeEEEEEecccc----ccCHHHHHHHHH
Confidence 99977766544444567888887 7887 55655433344455565 456789999998876 889999999998
Q ss_pred HhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcC--ChhhHHHHHHHcCeEEEccCCCCCCCc
Q 001292 439 PLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFP 516 (1106)
Q Consensus 439 ~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG--~~eDL~~LyaaADVfV~PS~~EeEGFG 516 (1106)
.+.. . ++++ ++++|.++.. +.++ +..+ +|.+.| +.+++..+|+.||++++||..| +||
T Consensus 221 ~l~~-------~-~~~~-l~i~G~~~~~--~~~~------~~~~-~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e--~~~ 280 (364)
T cd03814 221 PLRR-------R-PPVR-LVIVGDGPAR--ARLE------ARYP-NVHFLGFLDGEELAAAYASADVFVFPSRTE--TFG 280 (364)
T ss_pred Hhhh-------c-CCce-EEEEeCCchH--HHHh------ccCC-cEEEEeccCHHHHHHHHHhCCEEEECcccc--cCC
Confidence 7752 2 5677 6889988864 4444 3444 899999 5688999999999999999986 999
Q ss_pred HHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHH
Q 001292 517 SLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVT 596 (1106)
Q Consensus 517 lvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~ 596 (1106)
++++||||||+|||+++.++..+++.++.+|+++++.|+++++++|.++++|++. +.+|++++++.+.++.|++.++
T Consensus 281 ~~~lEa~a~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 357 (364)
T cd03814 281 LVVLEAMASGLPVVAPDAGGPADIVTDGENGLLVEPGDAEAFAAALAALLADPEL---RRRMAARARAEAERRSWEAFLD 357 (364)
T ss_pred cHHHHHHHcCCCEEEcCCCCchhhhcCCcceEEcCCCCHHHHHHHHHHHHcCHHH---HHHHHHHHHHHHhhcCHHHHHH
Confidence 9999999999999999999999999998999999999999999999999999987 6889999999998878888888
Q ss_pred HHHHHHH
Q 001292 597 RYARILE 603 (1106)
Q Consensus 597 ~Y~eLye 603 (1106)
.+.++|+
T Consensus 358 ~~~~~~~ 364 (364)
T cd03814 358 NLLEAYR 364 (364)
T ss_pred HHHHhhC
Confidence 9888773
No 30
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.97 E-value=3.5e-28 Score=262.11 Aligned_cols=322 Identities=17% Similarity=0.275 Sum_probs=248.2
Q ss_pred EEEEEeCCCC-CChhHHHHHHHHHHHHHCCCEEEEEEcCCCC-c-hH--------------------HHHHHhHHHHHhh
Q 001292 224 RIGLILGNMA-KDSRSLLLITVVKNLQKLGYVFKIYAVRSGN-S-HS--------------------LWEQIAGQISILG 280 (1106)
Q Consensus 224 RIalVlg~L~-~gGesl~vv~LakaLqe~GyeVtV~t~~dg~-~-~~--------------------i~r~lg~lvkiIr 280 (1106)
||++++..+. .||.+..+..++++|.+.||+|++++..+.. . .. .+.....+..+++
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGEPPFYELDPKIKVIDLGDKRDSKLLARFKKLRRLRKLLK 80 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCCccceeecccccccchhccccchHHHHHhhc
Confidence 5899999998 7999999999999999999999999885542 0 00 1111222566777
Q ss_pred ccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCC-CcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEe
Q 001292 281 QEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHS-IPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVF 359 (1106)
Q Consensus 281 ~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~g-IPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa 359 (1106)
..++|+|+.+... ....+.... .+ +|+|.+.|+......... . ........++.+|.+++
T Consensus 81 ~~~~d~i~~~~~~--~~~~~~~~~----------~~~~~~i~~~~~~~~~~~~~~------~-~~~~~~~~~~~~d~ii~ 141 (348)
T cd03820 81 NNKPDVVISFLTS--LLTFLASLG----------LKIVKLIVSEHNSPDAYKKRL------R-RLLLRRLLYRRADAVVV 141 (348)
T ss_pred ccCCCEEEEcCch--HHHHHHHHh----------hccccEEEecCCCccchhhhh------H-HHHHHHHHHhcCCEEEE
Confidence 7899999998766 222222211 23 599999898632211111 0 01113456789999999
Q ss_pred cCCChhhhhcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHHH
Q 001292 360 PDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGP 439 (1106)
Q Consensus 360 ~S~~~~~~~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~ 439 (1106)
.+..........+..++.++|| +++. ..+.+. ...+.++++++|++.. .||.+.++++++.
T Consensus 142 ~s~~~~~~~~~~~~~~~~vi~~-~~~~---~~~~~~-----------~~~~~~~i~~~g~~~~----~K~~~~l~~~~~~ 202 (348)
T cd03820 142 LTEEDRALYYKKFNKNVVVIPN-PLPF---PPEEPS-----------SDLKSKRILAVGRLVP----QKGFDLLIEAWAK 202 (348)
T ss_pred eCHHHHHHhhccCCCCeEEecC-CcCh---hhcccc-----------CCCCCcEEEEEEeecc----ccCHHHHHHHHHH
Confidence 9977654445566778999998 6876 222211 2346779999999887 8999999999987
Q ss_pred hHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHH
Q 001292 440 LLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLI 519 (1106)
Q Consensus 440 Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvL 519 (1106)
+.+ ..|+++ ++|+|.++.. +.++++++++++.+ +|.+.|..+++..+|+.||++++||..| +||+++
T Consensus 203 l~~-------~~~~~~-l~i~G~~~~~--~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~ad~~i~ps~~e--~~~~~~ 269 (348)
T cd03820 203 IAK-------KHPDWK-LRIVGDGPER--EALEALIKELGLED-RVILLGFTKNIEEYYAKASIFVLTSRFE--GFPMVL 269 (348)
T ss_pred HHh-------cCCCeE-EEEEeCCCCH--HHHHHHHHHcCCCC-eEEEcCCcchHHHHHHhCCEEEeCcccc--ccCHHH
Confidence 753 237887 6889998865 88888999999987 9999999899999999999999999986 999999
Q ss_pred HHHHHhCCCEEecCCCC-chhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHH
Q 001292 520 VRAMTFGIPVITPDFPI-IKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRY 598 (1106)
Q Consensus 520 LEAMA~G~PVIASD~gG-I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y 598 (1106)
+|||++|+|||+++.++ ..+++.++.+|++++..|+++++++|.++++|++. +++|++++++.++++.|++.+.+|
T Consensus 270 ~Ea~a~G~Pvi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 346 (348)
T cd03820 270 LEAMAFGLPVISFDCPTGPSEIIEDGVNGLLVPNGDVEALAEALLRLMEDEEL---RKRMGANARESAERFSIENIIKQW 346 (348)
T ss_pred HHHHHcCCCEEEecCCCchHhhhccCcceEEeCCCCHHHHHHHHHHHHcCHHH---HHHHHHHHHHHHHHhCHHHHHHHh
Confidence 99999999999999754 56777777799999999999999999999999998 688999998888888888877776
Q ss_pred H
Q 001292 599 A 599 (1106)
Q Consensus 599 ~ 599 (1106)
.
T Consensus 347 ~ 347 (348)
T cd03820 347 E 347 (348)
T ss_pred c
Confidence 4
No 31
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.97 E-value=1.5e-28 Score=287.97 Aligned_cols=351 Identities=16% Similarity=0.144 Sum_probs=250.7
Q ss_pred EEEEEeCCCCC----ChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchH--------------------------------
Q 001292 224 RIGLILGNMAK----DSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHS-------------------------------- 267 (1106)
Q Consensus 224 RIalVlg~L~~----gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~-------------------------------- 267 (1106)
+|++|+.++.+ ||....+..|.++|+++|++|.|+++..+....
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQLLVLRLFGVPVGGRPEYVGVFELPVDG 80 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhHhccCeEEEEEEeeccCCceeEEEEEEEEeCC
Confidence 58888887654 999999999999999999999999863221100
Q ss_pred ---------H-------------------HH--HH-hHHHHHhhc--cCccEEEEccccHHHHHHHHHHHhhhhcccCCC
Q 001292 268 ---------L-------------------WE--QI-AGQISILGQ--EQYSLIDWSIFDGIIADSLEAKEAISSLMQEPF 314 (1106)
Q Consensus 268 ---------i-------------------~r--~l-g~lvkiIr~--~~pDiIh~~~~~~i~v~~La~k~~idII~te~~ 314 (1106)
. .+ .+ .....++.. .+||+||+|.+.+.++..+...... ....
T Consensus 81 v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~pDviH~hd~~t~~~~~~l~~~~~----~~~~ 156 (476)
T cd03791 81 VPVYFLDNPDYFDRPGLYDDSGYDYEDNAERFALFSRAALELLRRLGWKPDIIHCHDWHTGLVPALLKEKYA----DPFF 156 (476)
T ss_pred ceEEEEcChHHcCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHhcCCCCcEEEECchHHHHHHHHHHHhhc----cccC
Confidence 0 00 00 012334443 7899999999998777766654321 0113
Q ss_pred CCCcEEEEEcCCcccccchhhhhhh---------------HHhHHHHHHHHhccccEEEecCCChhhhhc----------
Q 001292 315 HSIPLVWIIQEDSLANRLPVYVERG---------------FQNLLSYWKSVFSRVNVIVFPDYTLPMLYS---------- 369 (1106)
Q Consensus 315 ~gIPVI~tIHna~Ls~r~~~Y~~~g---------------leklis~~~~~l~~AD~VIa~S~~~~~~~~---------- 369 (1106)
.++|+|+|+|+.........+.... ........+..+..+|.|+++|........
T Consensus 157 ~~~~~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~~~~~gl~~ 236 (476)
T cd03791 157 KNIKTVFTIHNLAYQGVFPLEALEDLGLPWEELFHIDGLEFYGQVNFLKAGIVYADAVTTVSPTYAREILTPEFGEGLDG 236 (476)
T ss_pred CCCCEEEEeCCCCCCCCCCHHHHHHcCCCccchhhhcccccCCcccHHHHHHHhcCcCeecCHhHHHHhCCCCCCcchHH
Confidence 5899999999953222111100000 000112223457789999999866544311
Q ss_pred --CCCCCCEEEeCCCCCCcccccccCcch------------------hHHHHHHHcCCC--CCcEEEEEEcccCcccccc
Q 001292 370 --VLDAGNFFVIPGSPADVWAVEAYSKSH------------------EKYQLRKENGFL--KDEIVVVVVGSSFFYNELS 427 (1106)
Q Consensus 370 --gi~~~KI~VIpN~GVDl~~~e~F~ps~------------------s~~~LR~~lGL~--~d~~VIL~VGRl~~y~kg~ 427 (1106)
.....++.+|+| |+|. +.|.+.. .+..+++++|++ ++.++|+++||+.. +
T Consensus 237 ~~~~~~~ki~~I~N-Gid~---~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g~~~~~~~~~i~~vGrl~~----~ 308 (476)
T cd03791 237 LLRARAGKLSGILN-GIDY---DVWNPATDPHLPANYSADDLEGKAENKAALQEELGLPVDPDAPLFGFVGRLTE----Q 308 (476)
T ss_pred HHHhccCCeEEEeC-CCcC---cccCccccchhhhcCCccccccHHHHHHHHHHHcCCCcCCCCCEEEEEeeccc----c
Confidence 123578999998 8997 5555431 245678889985 78899999999988 8
Q ss_pred CCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEc-CCh-hhHHHHHHHcCeEE
Q 001292 428 WDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHY-GFN-GDVNGVLLMADIVL 505 (1106)
Q Consensus 428 Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~fl-G~~-eDL~~LyaaADVfV 505 (1106)
||++.+++|+..+.+ .+++ ++++|.|+..+.+.++++++++ .+ +|.+. |.. +.+..+|+.||+++
T Consensus 309 Kg~~~li~a~~~l~~---------~~~~-lvi~G~g~~~~~~~~~~~~~~~--~~-~v~~~~~~~~~~~~~~~~~aDv~l 375 (476)
T cd03791 309 KGIDLLLEALPELLE---------LGGQ-LVILGSGDPEYEEALRELAARY--PG-RVAVLIGYDEALAHLIYAGADFFL 375 (476)
T ss_pred ccHHHHHHHHHHHHH---------cCcE-EEEEecCCHHHHHHHHHHHHhC--CC-cEEEEEeCCHHHHHHHHHhCCEEE
Confidence 999999999987763 2356 6888998765567788887765 33 66654 544 44678999999999
Q ss_pred EccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCC------eEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHH
Q 001292 506 YGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGA------QVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVA 579 (1106)
Q Consensus 506 ~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~------nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mG 579 (1106)
+||.+| +||++++|||+||+|||+++.||+.|+|.++. +|+++++.|+++|+++|.++++.....+...+++
T Consensus 376 ~pS~~E--~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~ 453 (476)
T cd03791 376 MPSRFE--PCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRALALYRDPEAWRKLQ 453 (476)
T ss_pred CCCCCC--CCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 999987 99999999999999999999999999999987 9999999999999999999886433222356777
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHH
Q 001292 580 SAGRLHAKNMLALDCVTRYARILE 603 (1106)
Q Consensus 580 e~Are~ake~fsee~v~~Y~eLye 603 (1106)
+++.+ ..+.|+.++++|.++|+
T Consensus 454 ~~~~~--~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 454 RNAMA--QDFSWDRSAKEYLELYR 475 (476)
T ss_pred HHHhc--cCCChHHHHHHHHHHHh
Confidence 77654 34566777789999986
No 32
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.97 E-value=2.3e-28 Score=275.17 Aligned_cols=335 Identities=18% Similarity=0.225 Sum_probs=243.7
Q ss_pred CCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCch----H----------------------HH----HHHhHHHHHhhcc
Q 001292 233 AKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSH----S----------------------LW----EQIAGQISILGQE 282 (1106)
Q Consensus 233 ~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~----~----------------------i~----r~lg~lvkiIr~~ 282 (1106)
..||.+..+..+++.|.+.||+|+|++....... . .+ .....+...++..
T Consensus 19 ~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (398)
T cd03800 19 DTGGQNVYVLELARALARLGHEVDIFTRRIDDALPPIVELAPGVRVVRVPAGPAEYLPKEELWPYLDEFADDLLRFLRRE 98 (398)
T ss_pred CCCceeehHHHHHHHHhccCceEEEEEecCCcccCCccccccceEEEecccccccCCChhhcchhHHHHHHHHHHHHHhc
Confidence 3589999999999999999999999986321100 0 00 0111134445555
Q ss_pred --CccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhh--hHHhHHHHHHHHhccccEEE
Q 001292 283 --QYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVER--GFQNLLSYWKSVFSRVNVIV 358 (1106)
Q Consensus 283 --~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~--gleklis~~~~~l~~AD~VI 358 (1106)
++|+||.+.+...++.....+. .++|+|+++|+............. ............++.+|.++
T Consensus 99 ~~~~Div~~~~~~~~~~~~~~~~~----------~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii 168 (398)
T cd03800 99 GGRPDLIHAHYWDSGLVALLLARR----------LGIPLVHTFHSLGAVKRRHLGAADTYEPARRIEAEERLLRAADRVI 168 (398)
T ss_pred CCCccEEEEecCccchHHHHHHhh----------cCCceEEEeecccccCCcccccccccchhhhhhHHHHHHhhCCEEE
Confidence 8999999876665555444432 578999999984321111000000 00111111234678999999
Q ss_pred ecCCChhhh---hcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHH
Q 001292 359 FPDYTLPML---YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMH 435 (1106)
Q Consensus 359 a~S~~~~~~---~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLe 435 (1106)
+++...... ....+..++.+||| |+|. +.+.+.......+..++.++++++|+++||+.. .||++.+++
T Consensus 169 ~~s~~~~~~~~~~~~~~~~~~~vi~n-g~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~gr~~~----~k~~~~ll~ 240 (398)
T cd03800 169 ASTPQEAEELYSLYGAYPRRIRVVPP-GVDL---ERFTPYGRAEARRARLLRDPDKPRILAVGRLDP----RKGIDTLIR 240 (398)
T ss_pred EcCHHHHHHHHHHccccccccEEECC-CCCc---cceecccchhhHHHhhccCCCCcEEEEEccccc----ccCHHHHHH
Confidence 998665433 22334556889998 7987 555544322233556677778899999999887 889999999
Q ss_pred HHHHhHHHHHhhccCCCCeEEEEEEcCCCCc----cHHHHHHHHHHcCCCCCcEEEcCCh--hhHHHHHHHcCeEEEccC
Q 001292 436 DVGPLLIKYARRNSVEGSFKFVFLCGNSTDG----YNDALQEVASRLGLLEHSVRHYGFN--GDVNGVLLMADIVLYGSS 509 (1106)
Q Consensus 436 A~k~Ll~k~aklk~~~PdikfLIIVG~Gper----Y~eeLkeLaeklGL~d~rV~flG~~--eDL~~LyaaADVfV~PS~ 509 (1106)
|+..+.++ +++++ ++++|.++.. +...++++++++++.+ +|.|+|.. +++..+|+.||++++||.
T Consensus 241 a~~~l~~~-------~~~~~-l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~adi~l~ps~ 311 (398)
T cd03800 241 AYAELPEL-------RERAN-LVIVGGPRDDILAMDEEELRELARELGVID-RVDFPGRVSREDLPALYRAADVFVNPAL 311 (398)
T ss_pred HHHHHHHh-------CCCeE-EEEEECCCCcchhhhhHHHHHHHHhcCCCc-eEEEeccCCHHHHHHHHHhCCEEEeccc
Confidence 99887643 37788 5777776542 2345678888899987 99999964 689999999999999998
Q ss_pred CCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHh
Q 001292 510 QVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNM 589 (1106)
Q Consensus 510 ~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~ 589 (1106)
.| ++|++++||||+|+|||+++.+++.+++.++.+|++++++|+++++++|.++++|++. +.+|+.++++.+++.
T Consensus 312 ~e--~~~~~l~Ea~a~G~Pvi~s~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~---~~~~~~~a~~~~~~~ 386 (398)
T cd03800 312 YE--PFGLTALEAMACGLPVVATAVGGPRDIVVDGVTGLLVDPRDPEALAAALRRLLTDPAL---RRRLSRAGLRRARAR 386 (398)
T ss_pred cc--ccCcHHHHHHhcCCCEEECCCCCHHHHccCCCCeEEeCCCCHHHHHHHHHHHHhCHHH---HHHHHHHHHHHHHHh
Confidence 86 9999999999999999999999999999999999999999999999999999999887 688999999999666
Q ss_pred cH-HHHHHHHH
Q 001292 590 LA-LDCVTRYA 599 (1106)
Q Consensus 590 fs-ee~v~~Y~ 599 (1106)
|+ +..+++|.
T Consensus 387 ~s~~~~~~~~~ 397 (398)
T cd03800 387 YTWERVAARLL 397 (398)
T ss_pred CCHHHHHHHHh
Confidence 65 55555664
No 33
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.97 E-value=4e-28 Score=261.62 Aligned_cols=324 Identities=19% Similarity=0.244 Sum_probs=248.3
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchH---------------------HHHHHhHHHHHhhcc
Q 001292 224 RIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHS---------------------LWEQIAGQISILGQE 282 (1106)
Q Consensus 224 RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~---------------------i~r~lg~lvkiIr~~ 282 (1106)
||+++++.+..||.+..+..++++|.+.|++|.+++........ .......+.+.++..
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLRDLLAILRLRRLLRKE 80 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchhhhceeeeecccccchhHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999875432110 011222356777778
Q ss_pred CccEEEEccc-cHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecC
Q 001292 283 QYSLIDWSIF-DGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPD 361 (1106)
Q Consensus 283 ~pDiIh~~~~-~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S 361 (1106)
++|+++.+.. ...++..+..+ .++|+|+++|+............ .......++.+|.+++.+
T Consensus 81 ~~dii~~~~~~~~~~~~~~~~~-----------~~~~~i~~~~~~~~~~~~~~~~~------~~~~~~~~~~~d~ii~~s 143 (353)
T cd03811 81 KPDVVISHLTTTPNVLALLAAR-----------LGTKLIVWEHNSLSLELKRKLRL------LLLIRKLYRRADKIVAVS 143 (353)
T ss_pred CCCEEEEcCccchhHHHHHHhh-----------cCCceEEEEcCcchhhhccchhH------HHHHHhhccccceEEEec
Confidence 9999999887 44444444431 26899999999632221111000 012345678999999998
Q ss_pred CChhhh---hcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHH
Q 001292 362 YTLPML---YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVG 438 (1106)
Q Consensus 362 ~~~~~~---~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k 438 (1106)
...... ..+.+..++.+||| |+|. ..+.+...... .++...+.++++++|++.. .||.+.++++++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~vi~~-~~~~---~~~~~~~~~~~---~~~~~~~~~~i~~~g~~~~----~k~~~~~i~~~~ 212 (353)
T cd03811 144 EGVKEDLLKLLGIPPDKIEVIYN-PIDI---EEIRALAEEPL---ELGIPPDGPVILAVGRLSP----QKGFDTLIRAFA 212 (353)
T ss_pred cchhhhHHHhhcCCccccEEecC-CcCh---hhcCcccchhh---hcCCCCCceEEEEEecchh----hcChHHHHHHHH
Confidence 776655 22333678999998 7887 44443321111 3456678899999999887 889999999998
Q ss_pred HhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHH
Q 001292 439 PLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSL 518 (1106)
Q Consensus 439 ~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlv 518 (1106)
.+... +++++ |+++|.++.. +.++++++++++.+ +|.+.|..+++..+|+.||++++||..| ++|++
T Consensus 213 ~l~~~-------~~~~~-l~i~G~~~~~--~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~d~~i~ps~~e--~~~~~ 279 (353)
T cd03811 213 LLRKE-------GPDAR-LVILGDGPLR--EELEALAKELGLAD-RVHFLGFQSNPYPYLKAADLFVLSSRYE--GFPNV 279 (353)
T ss_pred Hhhhc-------CCCce-EEEEcCCccH--HHHHHHHHhcCCCc-cEEEecccCCHHHHHHhCCEEEeCcccC--CCCcH
Confidence 77642 36787 6888998865 88889999999987 9999999999999999999999999986 99999
Q ss_pred HHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHH---HHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcH
Q 001292 519 IVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGL---SRAFSLFISNGKLSKFARTVASAGRLHAKNMLA 591 (1106)
Q Consensus 519 LLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeL---AeAI~~LLsDpelRk~r~~mGe~Are~ake~fs 591 (1106)
++|||++|+|||+++.+++.|++.++.+|++++++|++++ +++|..+.++++. ..+++.++++.+.+.|+
T Consensus 280 ~~Ea~~~G~PvI~~~~~~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~ 352 (353)
T cd03811 280 LLEAMALGTPVVATDCPGPREILEDGENGLLVPVGDEAALAAAALALLDLLLDPEL---RERLAAAARERVAREYS 352 (353)
T ss_pred HHHHHHhCCCEEEcCCCChHHHhcCCCceEEECCCCHHHHHHHHHHHHhccCChHH---HHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999 6777777777766 67888877777777664
No 34
>PRK14098 glycogen synthase; Provisional
Probab=99.97 E-value=3.5e-28 Score=288.48 Aligned_cols=354 Identities=15% Similarity=0.147 Sum_probs=255.7
Q ss_pred CEEEEEeCCCCC----ChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHH------------------------------
Q 001292 223 PRIGLILGNMAK----DSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSL------------------------------ 268 (1106)
Q Consensus 223 ~RIalVlg~L~~----gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i------------------------------ 268 (1106)
++|++|..++.+ ||-.-.+..|.++|+++|++|.|+.+..+.....
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYGTINDRKFRLHDVLRLSDIEVPLKEKTDLLHVKVTA 85 (489)
T ss_pred cEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCCchhhhhhccccceEEEEEEEeecCeeEEEEEEEec
Confidence 899999988766 8889999999999999999998876632111000
Q ss_pred HH-------------H------Hh--------------------HHHHHhhc--cCccEEEEccccHHHHHHHHHHHhhh
Q 001292 269 WE-------------Q------IA--------------------GQISILGQ--EQYSLIDWSIFDGIIADSLEAKEAIS 307 (1106)
Q Consensus 269 ~r-------------~------lg--------------------~lvkiIr~--~~pDiIh~~~~~~i~v~~La~k~~id 307 (1106)
.. . .+ +....++. .+||+||+|.+.+.++..+......
T Consensus 86 ~~~~~v~~~~~~~~~~f~r~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~~pDiiH~hdw~t~l~~~~l~~~~~- 164 (489)
T PRK14098 86 LPSSKIQTYFLYNEKYFKRNGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGWKPDIIHCHDWYAGLVPLLLKTVYA- 164 (489)
T ss_pred ccCCCceEEEEeCHHHcCCCCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHhh-
Confidence 00 0 00 01223322 4789999999888887766654321
Q ss_pred hcccCCCCCCcEEEEEcCCcccccchh--h-------hhhhHH---hHHHHHHHHhccccEEEecCCChhhh-hc-----
Q 001292 308 SLMQEPFHSIPLVWIIQEDSLANRLPV--Y-------VERGFQ---NLLSYWKSVFSRVNVIVFPDYTLPML-YS----- 369 (1106)
Q Consensus 308 II~te~~~gIPVI~tIHna~Ls~r~~~--Y-------~~~gle---klis~~~~~l~~AD~VIa~S~~~~~~-~~----- 369 (1106)
....+.++|+|+|+|+......... + ...+.. ..+...+..+..+|.|+++|...... ..
T Consensus 165 --~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~n~lk~~i~~ad~VitVS~~~a~ei~~~~~~~ 242 (489)
T PRK14098 165 --DHEFFKDIKTVLTIHNVYRQGVLPFKVFQKLLPEEVCSGLHREGDEVNMLYTGVEHADLLTTTSPRYAEEIAGDGEEA 242 (489)
T ss_pred --hccccCCCCEEEEcCCCcccCCCCHHHHHHhCCHHhhhhhhhcCCcccHHHHHHHhcCcceeeCHHHHHHhCcCCCCC
Confidence 0111357999999999432111100 0 000000 11223345678999999999766543 11
Q ss_pred -CCC------CCCEEEeCCCCCCcccccccCcch------------------hHHHHHHHcCCC--CCcEEEEEEcccCc
Q 001292 370 -VLD------AGNFFVIPGSPADVWAVEAYSKSH------------------EKYQLRKENGFL--KDEIVVVVVGSSFF 422 (1106)
Q Consensus 370 -gi~------~~KI~VIpN~GVDl~~~e~F~ps~------------------s~~~LR~~lGL~--~d~~VIL~VGRl~~ 422 (1106)
+++ ..++.+|+| |||. +.|.|.. .+..+++++|++ ++.++|+++||+.+
T Consensus 243 ~gl~~~l~~~~~kl~~I~N-GID~---~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~lgl~~~~~~~~i~~vgRl~~ 318 (489)
T PRK14098 243 FGLDKVLEERKMRLHGILN-GIDT---RQWNPSTDKLIKKRYSIERLDGKLENKKALLEEVGLPFDEETPLVGVIINFDD 318 (489)
T ss_pred cChHHHHHhcCCCeeEEeC-Cccc---cccCCcccccccccCCcchhhhHHHHHHHHHHHhCCCCccCCCEEEEeccccc
Confidence 222 578999998 8998 5565532 245678888986 45789999999998
Q ss_pred cccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCCh--hhHHHHHHH
Q 001292 423 YNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFN--GDVNGVLLM 500 (1106)
Q Consensus 423 y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~--eDL~~Lyaa 500 (1106)
+||++.+++|+..+.+ ++++ |+|+|.|+..|.+.++++++++ ++ +|.|.|.. +++..+|++
T Consensus 319 ----~KG~d~li~a~~~l~~---------~~~~-lvivG~G~~~~~~~l~~l~~~~--~~-~V~~~g~~~~~~~~~~~a~ 381 (489)
T PRK14098 319 ----FQGAELLAESLEKLVE---------LDIQ-LVICGSGDKEYEKRFQDFAEEH--PE-QVSVQTEFTDAFFHLAIAG 381 (489)
T ss_pred ----cCcHHHHHHHHHHHHh---------cCcE-EEEEeCCCHHHHHHHHHHHHHC--CC-CEEEEEecCHHHHHHHHHh
Confidence 9999999999987753 3567 6889999865668899999876 34 89999844 457899999
Q ss_pred cCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhcc----CCeEEEEcCCCHHHHHHHHHHHH---hCcccHH
Q 001292 501 ADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAE----GAQVIFFQKDNPEGLSRAFSLFI---SNGKLSK 573 (1106)
Q Consensus 501 ADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~D----g~nG~LV~~~D~eeLAeAI~~LL---sDpelRk 573 (1106)
||++++||.+| +||++.+|||+||+|+|+++.||+.|.+.+ +.+|+++++.|+++|+++|.+++ +|++.
T Consensus 382 aDi~l~PS~~E--~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~~~~~~~-- 457 (489)
T PRK14098 382 LDMLLMPGKIE--SCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALALYHDEER-- 457 (489)
T ss_pred CCEEEeCCCCC--CchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHHHHcCHHH--
Confidence 99999999987 999999999999999999999999988864 67999999999999999999865 56654
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhc
Q 001292 574 FARTVASAGRLHAKNMLALDCVTRYARILENVLN 607 (1106)
Q Consensus 574 ~r~~mGe~Are~ake~fsee~v~~Y~eLyeslLk 607 (1106)
..+++.++. .+++.|+.++++|.++|+++++
T Consensus 458 -~~~~~~~~~--~~~fsw~~~a~~y~~lY~~~~~ 488 (489)
T PRK14098 458 -WEELVLEAM--ERDFSWKNSAEEYAQLYRELLG 488 (489)
T ss_pred -HHHHHHHHh--cCCCChHHHHHHHHHHHHHHhc
Confidence 466666553 2455667777899999998764
No 35
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.97 E-value=2.6e-28 Score=279.97 Aligned_cols=338 Identities=15% Similarity=0.150 Sum_probs=229.9
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHH-----------------------H-----H--H-H
Q 001292 224 RIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSL-----------------------W-----E--Q-I 272 (1106)
Q Consensus 224 RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i-----------------------~-----r--~-l 272 (1106)
||+||++++... ...|+++|.++||+|+++|..+...... + + . .
T Consensus 1 ~il~~~~~~p~~-----~~~la~~L~~~G~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (396)
T cd03818 1 RILFVHQNFPGQ-----FRHLAPALAAQGHEVVFLTEPNAAPPPGGVRVVRYRPPRGPTSGTHPYLREFEEAVLRGQAVA 75 (396)
T ss_pred CEEEECCCCchh-----HHHHHHHHHHCCCEEEEEecCCCCCCCCCeeEEEecCCCCCCCCCCccchhHHHHHHHHHHHH
Confidence 588998888743 3569999999999999999854321000 0 0 0 0
Q ss_pred hHHHHH-hhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEc------CCcc--cccchhhh--hhhHH
Q 001292 273 AGQISI-LGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQ------EDSL--ANRLPVYV--ERGFQ 341 (1106)
Q Consensus 273 g~lvki-Ir~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIH------na~L--s~r~~~Y~--~~gle 341 (1106)
.....+ .+..+||+||.|...+... +... . +.++|+|...| +... ........ ...+.
T Consensus 76 ~~~~~~~~~~~~pdvi~~h~~~~~~~--~l~~-~--------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (396)
T cd03818 76 RALLALRAKGFRPDVIVAHPGWGETL--FLKD-V--------WPDAPLIGYFEFYYRAEGADVGFDPEFPPSLDDALRLR 144 (396)
T ss_pred HHHHHHHhcCCCCCEEEECCccchhh--hHHH-h--------CCCCCEEEEEeeeecCCCCCCCCCCCCCCchhHHHHHH
Confidence 001111 2346799999986443221 1211 1 24577776543 3211 10000000 00111
Q ss_pred hHHHHHHHHhccccEEEecCCChhhhhcCCCCCCEEEeCCCCCCcccccccCcchhH-HHHHHHcCCCCCcEEEEEEcc-
Q 001292 342 NLLSYWKSVFSRVNVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEK-YQLRKENGFLKDEIVVVVVGS- 419 (1106)
Q Consensus 342 klis~~~~~l~~AD~VIa~S~~~~~~~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~-~~LR~~lGL~~d~~VIL~VGR- 419 (1106)
.........+..+|.+|++|............+++.|||| |+|. +.|.+.... ...+....+.++.++|+++||
T Consensus 145 ~~~~~~~~~~~~ad~vi~~s~~~~~~~~~~~~~ki~vI~n-gvd~---~~f~~~~~~~~~~~~~~~~~~~~~~i~~vgR~ 220 (396)
T cd03818 145 NRNALILLALAQADAGVSPTRWQRSTFPAELRSRISVIHD-GIDT---DRLRPDPQARLRLPNGRVLTPGDEVITFVARN 220 (396)
T ss_pred HhhhHhHHHHHhCCEEECCCHHHHhhCcHhhccceEEeCC-Cccc---cccCCCchhhhcccccccCCCCCeEEEEECCC
Confidence 1111123467899999999876555432222468999998 8998 667654322 222333345667889999997
Q ss_pred cCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCcc-------HHHHHHHHHHcCC---CCCcEEEcC
Q 001292 420 SFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGY-------NDALQEVASRLGL---LEHSVRHYG 489 (1106)
Q Consensus 420 l~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY-------~eeLkeLaeklGL---~d~rV~flG 489 (1106)
+.+ .||++.+++|+..+.++ .|+++ |+|+|.+...| .+..+++.++++. .+ +|+|+|
T Consensus 221 l~~----~Kg~~~ll~a~~~l~~~-------~~~~~-lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~V~f~G 287 (396)
T cd03818 221 LEP----YRGFHVFMRALPRLLRA-------RPDAR-VVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLS-RVHFLG 287 (396)
T ss_pred ccc----ccCHHHHHHHHHHHHHH-------CCCcE-EEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcc-eEEEeC
Confidence 776 89999999999887643 37888 57777632111 0123344444442 34 899999
Q ss_pred Ch--hhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 490 FN--GDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 490 ~~--eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
+. +++..+|+.||++++||..| ++|++++||||||+|||+++.+++.|++.++.+|++++++|+++|+++|.++++
T Consensus 288 ~v~~~~~~~~l~~adv~v~~s~~e--~~~~~llEAmA~G~PVIas~~~g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~ 365 (396)
T cd03818 288 RVPYDQYLALLQVSDVHVYLTYPF--VLSWSLLEAMACGCLVVGSDTAPVREVITDGENGLLVDFFDPDALAAAVIELLD 365 (396)
T ss_pred CCCHHHHHHHHHhCcEEEEcCccc--ccchHHHHHHHCCCCEEEcCCCCchhhcccCCceEEcCCCCHHHHHHHHHHHHh
Confidence 65 78999999999999999876 999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHHHHHHhcHH-HHHHHHH
Q 001292 568 NGKLSKFARTVASAGRLHAKNMLAL-DCVTRYA 599 (1106)
Q Consensus 568 DpelRk~r~~mGe~Are~ake~fse-e~v~~Y~ 599 (1106)
|++. +.+|+++|++.++++|+. .++.+|.
T Consensus 366 ~~~~---~~~l~~~ar~~~~~~fs~~~~~~~~~ 395 (396)
T cd03818 366 DPAR---RARLRRAARRTALRYDLLSVCLPRQL 395 (396)
T ss_pred CHHH---HHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 9987 688999999999986654 4455664
No 36
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.97 E-value=1.9e-28 Score=273.89 Aligned_cols=332 Identities=14% Similarity=0.145 Sum_probs=241.2
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCc----------h-----HHHHH----------HhHHHHH
Q 001292 224 RIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNS----------H-----SLWEQ----------IAGQISI 278 (1106)
Q Consensus 224 RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~----------~-----~i~r~----------lg~lvki 278 (1106)
+|+++.+++.+. .+.++..+++.|. |+++++++...... . ..... ......+
T Consensus 1 ~~~~~~~~~~~~-~e~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (367)
T cd05844 1 RVLIFRPLLLAP-SETFVRNQAEALR--RFRPVYVGGRRLGPAPLGALAVRLADLAGGKAGLRLGALRLLTGSAPQLRRL 77 (367)
T ss_pred CEEEEeCCCCCC-chHHHHHHHHhcc--cCCcEEEEeeccCCCCCcccceeeeecccchhHHHHHHHHhccccccHHHHH
Confidence 466777776665 7778999999995 77777776532110 0 00000 0013345
Q ss_pred hhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEE
Q 001292 279 LGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIV 358 (1106)
Q Consensus 279 Ir~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VI 358 (1106)
++..++|+||.+.....+......+ ..++|+|+++|+.........................++.+|.++
T Consensus 78 ~~~~~~dvvh~~~~~~~~~~~~~~~----------~~~~p~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii 147 (367)
T cd05844 78 LRRHRPDLVHAHFGFDGVYALPLAR----------RLGVPLVVTFHGFDATTSLALLLRSRWALYARRRRRLARRAALFI 147 (367)
T ss_pred HHhhCCCEEEeccCchHHHHHHHHH----------HcCCCEEEEEeCccccccchhhcccchhHHHHHHHHHHHhcCEEE
Confidence 7778999999986554443333222 267999999998432211111000000111122334578899999
Q ss_pred ecCCChhhh--hcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHH
Q 001292 359 FPDYTLPML--YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHD 436 (1106)
Q Consensus 359 a~S~~~~~~--~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA 436 (1106)
+.+...... ..+++..++.+++| |+|. +.|.+.. ...+.++++++|++.. .||.+.+++|
T Consensus 148 ~~s~~~~~~~~~~~~~~~~i~vi~~-g~d~---~~~~~~~----------~~~~~~~i~~~G~~~~----~K~~~~li~a 209 (367)
T cd05844 148 AVSQFIRDRLLALGFPPEKVHVHPI-GVDT---AKFTPAT----------PARRPPRILFVGRFVE----KKGPLLLLEA 209 (367)
T ss_pred ECCHHHHHHHHHcCCCHHHeEEecC-CCCH---HhcCCCC----------CCCCCcEEEEEEeecc----ccChHHHHHH
Confidence 999766554 33667778999998 7887 4454321 1235678999999887 8999999999
Q ss_pred HHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCCh--hhHHHHHHHcCeEEEccCCC---
Q 001292 437 VGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFN--GDVNGVLLMADIVLYGSSQV--- 511 (1106)
Q Consensus 437 ~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~--eDL~~LyaaADVfV~PS~~E--- 511 (1106)
+..+.++ +++++ |+++|+++.. ++++++++++|+.+ +|.|.|.. +++..+|+.||++++||...
T Consensus 210 ~~~l~~~-------~~~~~-l~ivG~g~~~--~~~~~~~~~~~~~~-~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~ 278 (367)
T cd05844 210 FARLARR-------VPEVR-LVIIGDGPLL--AALEALARALGLGG-RVTFLGAQPHAEVRELMRRARIFLQPSVTAPSG 278 (367)
T ss_pred HHHHHHh-------CCCeE-EEEEeCchHH--HHHHHHHHHcCCCC-eEEECCCCCHHHHHHHHHhCCEEEECcccCCCC
Confidence 9877643 37887 7889998854 88999999999987 99999965 78999999999999999631
Q ss_pred -CCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhc
Q 001292 512 -EQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNML 590 (1106)
Q Consensus 512 -eEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~f 590 (1106)
.||||++++||||||+|||+++.+++.|++.++.+|+++++.|+++++++|.++++|+++ +.+|+.++++.+++.|
T Consensus 279 ~~E~~~~~~~EA~a~G~PvI~s~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~---~~~~~~~a~~~~~~~~ 355 (367)
T cd05844 279 DAEGLPVVLLEAQASGVPVVATRHGGIPEAVEDGETGLLVPEGDVAALAAALGRLLADPDL---RARMGAAGRRRVEERF 355 (367)
T ss_pred CccCCchHHHHHHHcCCCEEEeCCCCchhheecCCeeEEECCCCHHHHHHHHHHHHcCHHH---HHHHHHHHHHHHHHHC
Confidence 149999999999999999999999999999999999999999999999999999999987 6889999999987665
Q ss_pred H-HHHHHHHHH
Q 001292 591 A-LDCVTRYAR 600 (1106)
Q Consensus 591 s-ee~v~~Y~e 600 (1106)
+ +..+.++.+
T Consensus 356 s~~~~~~~l~~ 366 (367)
T cd05844 356 DLRRQTAKLEA 366 (367)
T ss_pred CHHHHHHHHhc
Confidence 5 555556654
No 37
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.97 E-value=6.8e-28 Score=265.25 Aligned_cols=339 Identities=18% Similarity=0.188 Sum_probs=245.5
Q ss_pred EEEEEeCCCC-CChhHHHHHHHHHHHHHCCCEEEEEEcCCCCch---------------HHHHHHhHHHHHhhccCccEE
Q 001292 224 RIGLILGNMA-KDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSH---------------SLWEQIAGQISILGQEQYSLI 287 (1106)
Q Consensus 224 RIalVlg~L~-~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~---------------~i~r~lg~lvkiIr~~~pDiI 287 (1106)
||++|.+... .||.+..+..++++|.+.|++|++++....... ..........+.++..++|+|
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii 80 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGGEQEVVRVIVLDNPLDYRRAARAIRLSGPDVV 80 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCCcccceeeeecCCchhHHHHHHHHhhcCCCEE
Confidence 5888888777 589999999999999999999999987433200 000111224566777899999
Q ss_pred EEccccHHH---HHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecC-CC
Q 001292 288 DWSIFDGII---ADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPD-YT 363 (1106)
Q Consensus 288 h~~~~~~i~---v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S-~~ 363 (1106)
|++.....+ .......... ..++|+|+++|+......... . . ......++.+|.+++.| ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~h~~~~~~~~~~--~---~---~~~~~~~~~~d~ii~~s~~~ 145 (366)
T cd03822 81 VIQHEYGIFGGEAGLYLLLLLR-------GLGIPVVVTLHTVLLHEPRPG--D---R---ALLRLLLRRADAVIVMSSEL 145 (366)
T ss_pred EEeeccccccchhhHHHHHHHh-------hcCCCEEEEEecCCccccchh--h---h---HHHHHHHhcCCEEEEeeHHH
Confidence 986633221 1111111100 267999999999622111111 0 1 11234577899999996 33
Q ss_pred hhhhhcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHH
Q 001292 364 LPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIK 443 (1106)
Q Consensus 364 ~~~~~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k 443 (1106)
...........++.+||| ++|. ..+.+.... ++.....+.++|+++|++.+ .|+.+.+++|+..+.++
T Consensus 146 ~~~~~~~~~~~~~~~i~~-~~~~---~~~~~~~~~----~~~~~~~~~~~i~~~G~~~~----~K~~~~ll~a~~~~~~~ 213 (366)
T cd03822 146 LRALLLRAYPEKIAVIPH-GVPD---PPAEPPESL----KALGGLDGRPVLLTFGLLRP----YKGLELLLEALPLLVAK 213 (366)
T ss_pred HHHHHhhcCCCcEEEeCC-CCcC---cccCCchhh----HhhcCCCCCeEEEEEeeccC----CCCHHHHHHHHHHHHhh
Confidence 333332222468999997 6876 333322111 33445567889999999887 89999999999877643
Q ss_pred HHhhccCCCCeEEEEEEcCCCCccHHHHH----HHHHHcCCCCCcEEEcCC---hhhHHHHHHHcCeEEEccCCCCCCCc
Q 001292 444 YARRNSVEGSFKFVFLCGNSTDGYNDALQ----EVASRLGLLEHSVRHYGF---NGDVNGVLLMADIVLYGSSQVEQGFP 516 (1106)
Q Consensus 444 ~aklk~~~PdikfLIIVG~GperY~eeLk----eLaeklGL~d~rV~flG~---~eDL~~LyaaADVfV~PS~~EeEGFG 516 (1106)
+++++ |+++|.+... ..... ++++++++.+ +|.|.|. .+++..+|+.||++++||..|.+++|
T Consensus 214 -------~~~~~-l~i~G~~~~~-~~~~~~~~~~~i~~~~~~~-~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~ 283 (366)
T cd03822 214 -------HPDVR-LLVAGETHPD-LERYRGEAYALAERLGLAD-RVIFINRYLPDEELPELFSAADVVVLPYRSADQTQS 283 (366)
T ss_pred -------CCCeE-EEEeccCccc-hhhhhhhhHhHHHhcCCCC-cEEEecCcCCHHHHHHHHhhcCEEEecccccccccc
Confidence 37888 6788887654 12222 2377889987 9999985 57899999999999999987544999
Q ss_pred HHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHH
Q 001292 517 SLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVT 596 (1106)
Q Consensus 517 lvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~ 596 (1106)
++++||||+|+|||+++.++ .+.+.++.+|++++++|+++++++|..+++|++. ..+|++++++.++++.|+..+.
T Consensus 284 ~~~~Ea~a~G~PvI~~~~~~-~~~i~~~~~g~~~~~~d~~~~~~~l~~l~~~~~~---~~~~~~~~~~~~~~~s~~~~~~ 359 (366)
T cd03822 284 GVLAYAIGFGKPVISTPVGH-AEEVLDGGTGLLVPPGDPAALAEAIRRLLADPEL---AQALRARAREYARAMSWERVAE 359 (366)
T ss_pred hHHHHHHHcCCCEEecCCCC-hheeeeCCCcEEEcCCCHHHHHHHHHHHHcChHH---HHHHHHHHHHHHhhCCHHHHHH
Confidence 99999999999999999999 7777788899999999999999999999999887 5889999999999977788888
Q ss_pred HHHHHHH
Q 001292 597 RYARILE 603 (1106)
Q Consensus 597 ~Y~eLye 603 (1106)
+|.++|+
T Consensus 360 ~~~~~~~ 366 (366)
T cd03822 360 RYLRLLA 366 (366)
T ss_pred HHHHHhC
Confidence 9988873
No 38
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.97 E-value=1.3e-27 Score=261.47 Aligned_cols=341 Identities=18% Similarity=0.239 Sum_probs=250.4
Q ss_pred EEEEEeCCCCC--ChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchH---------------HHH-------HHhHHHHHh
Q 001292 224 RIGLILGNMAK--DSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHS---------------LWE-------QIAGQISIL 279 (1106)
Q Consensus 224 RIalVlg~L~~--gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~---------------i~r-------~lg~lvkiI 279 (1106)
||+++++.+.+ +|.+..+..++++|.+.||+|++++........ ... ........+
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEEVVVVRPFRVPTFKYPDFRLPLPIPRALIIIL 80 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCcccccccccccccccchhhhhhccccHHHHHHHHH
Confidence 57888877754 888999999999999999999999875432100 000 111133446
Q ss_pred hccCccEEEEccccHHH-HHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhh--hhHHhHH--HHHHHHhccc
Q 001292 280 GQEQYSLIDWSIFDGII-ADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVE--RGFQNLL--SYWKSVFSRV 354 (1106)
Q Consensus 280 r~~~pDiIh~~~~~~i~-v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~--~glekli--s~~~~~l~~A 354 (1106)
+..++|+|+.+...... ......+ ..++|+|+++|.... ........ ....... ......++.+
T Consensus 81 ~~~~~Div~~~~~~~~~~~~~~~~~----------~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (374)
T cd03817 81 KELGPDIVHTHTPFSLGLLGLRVAR----------KLGIPVVATYHTMYE-DYTHYVPLGRLLARAVVRRKLSRRFYNRC 149 (374)
T ss_pred hhcCCCEEEECCchhhhhHHHHHHH----------HcCCCEEEEecCCHH-HHHHHHhcccchhHHHHHHHHHHHHhhhC
Confidence 77899999997653322 1111111 267899999998421 00000000 0001111 2234467899
Q ss_pred cEEEecCCChhhhhcC-CCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHH
Q 001292 355 NVIVFPDYTLPMLYSV-LDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVA 433 (1106)
Q Consensus 355 D~VIa~S~~~~~~~~g-i~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlL 433 (1106)
|.+++.+......... ....++.++|+ |+|. ..+.+.. ....+..+++.++.++|+++|++.. .|+.+.+
T Consensus 150 d~i~~~s~~~~~~~~~~~~~~~~~vi~~-~~~~---~~~~~~~-~~~~~~~~~~~~~~~~i~~~G~~~~----~k~~~~l 220 (374)
T cd03817 150 DAVIAPSEKIADLLREYGVKRPIEVIPT-GIDL---DRFEPVD-GDDERRKLGIPEDEPVLLYVGRLAK----EKNIDFL 220 (374)
T ss_pred CEEEeccHHHHHHHHhcCCCCceEEcCC-ccch---hccCccc-hhHHHHhcCCCCCCeEEEEEeeeec----ccCHHHH
Confidence 9999999776555221 12345888887 7887 4554433 2233667777788899999998876 8899999
Q ss_pred HHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCCh--hhHHHHHHHcCeEEEccCCC
Q 001292 434 MHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFN--GDVNGVLLMADIVLYGSSQV 511 (1106)
Q Consensus 434 LeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~--eDL~~LyaaADVfV~PS~~E 511 (1106)
++++..+..+ +++++ ++++|.++.. +.++++++++++.+ +|.+.|.. +++..+|+.||++++||..|
T Consensus 221 ~~~~~~~~~~-------~~~~~-l~i~G~~~~~--~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e 289 (374)
T cd03817 221 IRAFARLLKE-------EPDVK-LVIVGDGPER--EELEELARELGLAD-RVIFTGFVPREELPDYYKAADLFVFASTTE 289 (374)
T ss_pred HHHHHHHHHh-------CCCeE-EEEEeCCchH--HHHHHHHHHcCCCC-cEEEeccCChHHHHHHHHHcCEEEeccccc
Confidence 9999877643 36787 6889998864 88999999999887 99999955 78999999999999999886
Q ss_pred CCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcH
Q 001292 512 EQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLA 591 (1106)
Q Consensus 512 eEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fs 591 (1106)
++|++++|||+||+|||+++.+++.+++.++.+|+++++.+. +++++|..++++++. .++|++++++.+++++
T Consensus 290 --~~~~~~~Ea~~~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~-~~~~~i~~l~~~~~~---~~~~~~~~~~~~~~~~- 362 (374)
T cd03817 290 --TQGLVLLEAMAAGLPVVAVDAPGLPDLVADGENGFLFPPGDE-ALAEALLRLLQDPEL---RRRLSKNAEESAEKFS- 362 (374)
T ss_pred --CcChHHHHHHHcCCcEEEeCCCChhhheecCceeEEeCCCCH-HHHHHHHHHHhChHH---HHHHHHHHHHHHHHHH-
Confidence 999999999999999999999999999999999999998877 999999999999987 5889999999998877
Q ss_pred HHHHHHHHHHHHH
Q 001292 592 LDCVTRYARILEN 604 (1106)
Q Consensus 592 ee~v~~Y~eLyes 604 (1106)
...++.++|++
T Consensus 363 --~~~~~~~~~~~ 373 (374)
T cd03817 363 --FAKKVEKLYEE 373 (374)
T ss_pred --HHHHHHHHHhc
Confidence 33455556553
No 39
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.97 E-value=1.2e-27 Score=264.45 Aligned_cols=319 Identities=18% Similarity=0.245 Sum_probs=246.3
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCch-----------------HHHHHHh---HHHHHhhccC
Q 001292 224 RIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSH-----------------SLWEQIA---GQISILGQEQ 283 (1106)
Q Consensus 224 RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~-----------------~i~r~lg---~lvkiIr~~~ 283 (1106)
|||++++.+..+ .+..+..+++.|.++|++|+|++..+.... ..+.... .+.+.++..+
T Consensus 1 ki~~~~~~~~~~-~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T cd03799 1 KIAYLVKEFPRL-SETFILREILALEAAGHEVEIFSLRPPEDTLVHPEDRAELARTRYLARSLALLAQALVLARELRRLG 79 (355)
T ss_pred CEEEECCCCCCc-chHHHHHHHHHHHhCCCeEEEEEecCcccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 589999998666 667789999999999999999997543211 0111111 1344456689
Q ss_pred ccEEEEcccc-HHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecCC
Q 001292 284 YSLIDWSIFD-GIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDY 362 (1106)
Q Consensus 284 pDiIh~~~~~-~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~ 362 (1106)
+|+||++... ..++..+..+. .++|+++++|+......... ......++.+|.+++.+.
T Consensus 80 ~Dii~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~vi~~s~ 139 (355)
T cd03799 80 IDHIHAHFGTTPATVAMLASRL----------GGIPYSFTAHGKDIFRSPDA----------IDLDEKLARADFVVAISE 139 (355)
T ss_pred CCEEEECCCCchHHHHHHHHHh----------cCCCEEEEEecccccccCch----------HHHHHHHhhCCEEEECCH
Confidence 9999998653 33344444321 46899999997532211110 123355788999999997
Q ss_pred Chhhhhc---CCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHHH
Q 001292 363 TLPMLYS---VLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGP 439 (1106)
Q Consensus 363 ~~~~~~~---gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~ 439 (1106)
....... +.+..++.++|| |+|. +.+.+.. .....+.++|+++|++.+ .||.+.+++++..
T Consensus 140 ~~~~~l~~~~~~~~~~~~vi~~-~~d~---~~~~~~~--------~~~~~~~~~i~~~g~~~~----~k~~~~l~~~~~~ 203 (355)
T cd03799 140 YNRQQLIRLLGCDPDKIHVVHC-GVDL---ERFPPRP--------PPPPGEPLRILSVGRLVE----KKGLDYLLEALAL 203 (355)
T ss_pred HHHHHHHHhcCCCcccEEEEeC-CcCH---HHcCCcc--------ccccCCCeEEEEEeeecc----ccCHHHHHHHHHH
Confidence 7665522 467788999998 7886 4443321 112346778999999877 8899999999987
Q ss_pred hHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCCh--hhHHHHHHHcCeEEEccCC------C
Q 001292 440 LLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFN--GDVNGVLLMADIVLYGSSQ------V 511 (1106)
Q Consensus 440 Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~--eDL~~LyaaADVfV~PS~~------E 511 (1106)
+.. .+++++ ++++|.++.. +.+++.++++++.+ +|.+.|+. +++..+|+.||++++||.. |
T Consensus 204 l~~-------~~~~~~-l~i~G~~~~~--~~~~~~~~~~~~~~-~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e 272 (355)
T cd03799 204 LKD-------RGIDFR-LDIVGDGPLR--DELEALIAELGLED-RVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDRE 272 (355)
T ss_pred Hhh-------cCCCeE-EEEEECCccH--HHHHHHHHHcCCCC-eEEECCcCChHHHHHHHHhCCEEEecceecCCCCcc
Confidence 753 237888 6889999876 88999999999887 99999966 7899999999999999987 6
Q ss_pred CCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcH
Q 001292 512 EQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLA 591 (1106)
Q Consensus 512 eEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fs 591 (1106)
+||++++||||+|+|||+++.++.++++.++.+|++++++|+++++++|.+++++++. ..+|++++++.+++.|+
T Consensus 273 --~~~~~~~Ea~a~G~Pvi~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~---~~~~~~~a~~~~~~~~s 347 (355)
T cd03799 273 --GLPVVLMEAMAMGLPVISTDVSGIPELVEDGETGLLVPPGDPEALADAIERLLDDPEL---RREMGEAGRARVEEEFD 347 (355)
T ss_pred --CccHHHHHHHHcCCCEEecCCCCcchhhhCCCceEEeCCCCHHHHHHHHHHHHhCHHH---HHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998899999999999999999999999987 68899999999988776
Q ss_pred HHHH
Q 001292 592 LDCV 595 (1106)
Q Consensus 592 ee~v 595 (1106)
.+..
T Consensus 348 ~~~~ 351 (355)
T cd03799 348 IRKQ 351 (355)
T ss_pred HHHH
Confidence 5543
No 40
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.97 E-value=8e-28 Score=266.73 Aligned_cols=336 Identities=17% Similarity=0.192 Sum_probs=245.6
Q ss_pred CEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHHHHHhHHHHHhhccCccEEEEccccHHHHHHHHH
Q 001292 223 PRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLWEQIAGQISILGQEQYSLIDWSIFDGIIADSLEA 302 (1106)
Q Consensus 223 ~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r~lg~lvkiIr~~~pDiIh~~~~~~i~v~~La~ 302 (1106)
+||+++......||.+..+..++++|.++|++|++++.... .+...++..++|+||.|......+.....
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~----------~~~~~~~~~~~diih~~~~~~~~~~~~~~ 70 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK----------ALISKIEIINADIVHLHWIHGGFLSIEDL 70 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc----------hhhhChhcccCCEEEEEccccCccCHHHH
Confidence 58999998888899999999999999999999999997653 23456667899999998755444332222
Q ss_pred HHhhhhcccCCCCCCcEEEEEcCCccc-cc-------------------chhhhhhhHH-hHHHHHHHHh-ccccEEEec
Q 001292 303 KEAISSLMQEPFHSIPLVWIIQEDSLA-NR-------------------LPVYVERGFQ-NLLSYWKSVF-SRVNVIVFP 360 (1106)
Q Consensus 303 k~~idII~te~~~gIPVI~tIHna~Ls-~r-------------------~~~Y~~~gle-klis~~~~~l-~~AD~VIa~ 360 (1106)
.... .++|+|+++|+.... .. ...+...... .........+ ..++.++++
T Consensus 71 ~~~~--------~~~~~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 142 (365)
T cd03825 71 SKLL--------DRKPVVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQLGSYPEKDLSRWIWRRKRKAWADLNLTIVAP 142 (365)
T ss_pred HHHH--------cCCCEEEEcccCcccccccCCccccccccccCCCCCCCCCCCcccHHHHHHHHHHHHhccCCcEEEeh
Confidence 1111 478999999983110 00 0000000011 1111112222 355667777
Q ss_pred CCChhhh---hcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHH
Q 001292 361 DYTLPML---YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDV 437 (1106)
Q Consensus 361 S~~~~~~---~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~ 437 (1106)
+...... ...++..++.++|| |+|. +.|.+. .....+..++++++..+++++|+... ...|+.+.+++|+
T Consensus 143 s~~~~~~~~~~~~~~~~~~~vi~n-gi~~---~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~K~~~~ll~a~ 215 (365)
T cd03825 143 SRWLADCARSSSLFKGIPIEVIPN-GIDT---TIFRPR-DKREARKRLGLPADKKIILFGAVGGT--DPRKGFDELIEAL 215 (365)
T ss_pred hHHHHHHHHhccccCCCceEEeCC-CCcc---cccCCC-cHHHHHHHhCCCCCCeEEEEEecCCC--ccccCHHHHHHHH
Confidence 7554444 12256678999998 7987 555443 24456778888888888777765432 1378999999999
Q ss_pred HHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChh---hHHHHHHHcCeEEEccCCCCCC
Q 001292 438 GPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNG---DVNGVLLMADIVLYGSSQVEQG 514 (1106)
Q Consensus 438 k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~e---DL~~LyaaADVfV~PS~~EeEG 514 (1106)
..+..+ ..++++ ++++|.++.. .. .++.+ +|.++|... ++..+|+.||++++||..| +
T Consensus 216 ~~l~~~------~~~~~~-~~i~G~~~~~--~~-------~~~~~-~v~~~g~~~~~~~~~~~~~~ad~~l~ps~~e--~ 276 (365)
T cd03825 216 KRLAER------WKDDIE-LVVFGASDPE--IP-------PDLPF-PVHYLGSLNDDESLALIYSAADVFVVPSLQE--N 276 (365)
T ss_pred HHhhhc------cCCCeE-EEEeCCCchh--hh-------ccCCC-ceEecCCcCCHHHHHHHHHhCCEEEeccccc--c
Confidence 877532 136777 6888988753 11 14555 899999654 6899999999999999986 9
Q ss_pred CcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcH-HH
Q 001292 515 FPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLA-LD 593 (1106)
Q Consensus 515 FGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fs-ee 593 (1106)
||++++|||+||+|||+++.+++.|++.++.+|++++..|+++++++|.++++|++. ..++++++++.+++.|+ +.
T Consensus 277 ~g~~~~Eam~~g~PvI~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~~~~---~~~~~~~~~~~~~~~~s~~~ 353 (365)
T cd03825 277 FPNTAIEALACGTPVVAFDVGGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLADPDE---REELGEAARELAENEFDSRV 353 (365)
T ss_pred ccHHHHHHHhcCCCEEEecCCCChhheeCCCceEEeCCCCHHHHHHHHHHHHhCHHH---HHHHHHHHHHHHHHhcCHHH
Confidence 999999999999999999999999999998899999999999999999999999986 58899999999977665 55
Q ss_pred HHHHHHHHHHHH
Q 001292 594 CVTRYARILENV 605 (1106)
Q Consensus 594 ~v~~Y~eLyesl 605 (1106)
.+++|.++|+++
T Consensus 354 ~~~~~~~~y~~~ 365 (365)
T cd03825 354 QAKRYLSLYEEL 365 (365)
T ss_pred HHHHHHHHHhhC
Confidence 566999999863
No 41
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.97 E-value=1e-27 Score=293.38 Aligned_cols=350 Identities=12% Similarity=0.097 Sum_probs=247.0
Q ss_pred CCCEEEEEeCCCC-----------CChhHHHHHHHHHHH--------HHCCC----EEEEEEcCCCC-------------
Q 001292 221 RPPRIGLILGNMA-----------KDSRSLLLITVVKNL--------QKLGY----VFKIYAVRSGN------------- 264 (1106)
Q Consensus 221 r~~RIalVlg~L~-----------~gGesl~vv~LakaL--------qe~Gy----eVtV~t~~dg~------------- 264 (1106)
+..+|++++.+-. .||+.+++..++++| +++|+ +|+|+|-....
T Consensus 254 ~~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~ 333 (784)
T TIGR02470 254 MVFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEKV 333 (784)
T ss_pred ccceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCccccccccccccc
Confidence 4588999875541 489999999999985 67899 66787752110
Q ss_pred --------------------------chHHHHHHhH----HHHHhh-c--cCccEEEEccccHHHHHHHHHHHhhhhccc
Q 001292 265 --------------------------SHSLWEQIAG----QISILG-Q--EQYSLIDWSIFDGIIADSLEAKEAISSLMQ 311 (1106)
Q Consensus 265 --------------------------~~~i~r~lg~----lvkiIr-~--~~pDiIh~~~~~~i~v~~La~k~~idII~t 311 (1106)
...+|..+.. +...+. . ..||+||.|.+++.+++.+.++.
T Consensus 334 ~~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glva~lla~~------- 406 (784)
T TIGR02470 334 YGTEHAWILRVPFRTENGIILRNWISRFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDGNLVASLLARK------- 406 (784)
T ss_pred cCCCceEEEEecCCCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchHHHHHHHHHh-------
Confidence 0111222211 222222 2 36999999999999988887754
Q ss_pred CCCCCCcEEEEEcCCcccccch---hhhhh-hHHhHHHHH---HHHhccccEEEecCCChhh------------------
Q 001292 312 EPFHSIPLVWIIQEDSLANRLP---VYVER-GFQNLLSYW---KSVFSRVNVIVFPDYTLPM------------------ 366 (1106)
Q Consensus 312 e~~~gIPVI~tIHna~Ls~r~~---~Y~~~-gleklis~~---~~~l~~AD~VIa~S~~~~~------------------ 366 (1106)
.++|++.+.|.....+... ++... ....+..++ ..+++.||.||+.+.....
T Consensus 407 ---lgVP~v~t~HsL~~~K~~~~g~~~~~~e~~~~~~~r~~ae~~~~~~AD~IItsT~qEi~~~~~~v~qY~s~~~ft~p 483 (784)
T TIGR02470 407 ---LGVTQCTIAHALEKTKYPDSDIYWQEFEDKYHFSCQFTADLIAMNAADFIITSTYQEIAGTKDSVGQYESHQAFTMP 483 (784)
T ss_pred ---cCCCEEEECCcchhhcccccccccccchhHHHhhhhhhHHHHHHhcCCEEEECcHHHhhhhhhhhhhhhhccccccc
Confidence 6899999999743222111 11000 001111111 2467899999999853311
Q ss_pred -h---hcCC--CCCCEEEeCCCCCCcccccccCcchhH------------------HHHHHHcCC--CCCcEEEEEEccc
Q 001292 367 -L---YSVL--DAGNFFVIPGSPADVWAVEAYSKSHEK------------------YQLRKENGF--LKDEIVVVVVGSS 420 (1106)
Q Consensus 367 -~---~~gi--~~~KI~VIpN~GVDl~~~e~F~ps~s~------------------~~LR~~lGL--~~d~~VIL~VGRl 420 (1106)
+ ..|+ +..|+.+||+ |+|. +.|.|.... ...++.+|+ .+++++|+++||+
T Consensus 484 ~Ly~vvnGid~~~~Ki~VVpP-GVD~---~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~~~~~G~l~d~~kpiIl~VGRL 559 (784)
T TIGR02470 484 GLYRVVHGIDVFDPKFNIVSP-GADE---SIYFPYSDKEKRLTNLHPEIEELLFSLEDNDEHYGYLKDPNKPIIFSMARL 559 (784)
T ss_pred ceeeeecCccCCcCCeEEECC-CcCh---hhcCCCCchhhhhhhhhcchhhhccchhhHHHHhCCCCCCCCcEEEEEeCC
Confidence 0 1123 4568999997 8998 556553211 112356675 5678899999999
Q ss_pred CccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCC----------ccHHHHHHHHHHcCCCCCcEEEcCC
Q 001292 421 FFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTD----------GYNDALQEVASRLGLLEHSVRHYGF 490 (1106)
Q Consensus 421 ~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~Gpe----------rY~eeLkeLaeklGL~d~rV~flG~ 490 (1106)
.+ .||++.+++|+.++.. + .++++ |+|+|.++. .+.+.+.++++++|+.+ +|.|+|.
T Consensus 560 ~~----~KGid~LIeA~~~l~~----l---~~~~~-LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g-~V~flG~ 626 (784)
T TIGR02470 560 DR----VKNLTGLVECYGRSPK----L---RELVN-LVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHG-QIRWIGA 626 (784)
T ss_pred Cc----cCCHHHHHHHHHHhHh----h---CCCeE-EEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCC-eEEEccC
Confidence 98 9999999999976532 1 14566 566665432 13467788999999997 9999995
Q ss_pred h---hhHHHHHH----HcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHH
Q 001292 491 N---GDVNGVLL----MADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFS 563 (1106)
Q Consensus 491 ~---eDL~~Lya----aADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~ 563 (1106)
. .++.++|. .+|+||+||.+| +||++++||||||+|||+++.||+.|+|.++.+|+++++.|+++++++|.
T Consensus 627 ~~~~~~~~elyr~iAd~adVfV~PS~~E--pFGLvvLEAMAcGlPVVAT~~GG~~EiV~dg~tGfLVdp~D~eaLA~aL~ 704 (784)
T TIGR02470 627 QLNRVRNGELYRYIADTKGIFVQPALYE--AFGLTVLEAMTCGLPTFATRFGGPLEIIQDGVSGFHIDPYHGEEAAEKIV 704 (784)
T ss_pred cCCcccHHHHHHHhhccCcEEEECCccc--CCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCCHHHHHHHHH
Confidence 3 45666664 347999999987 99999999999999999999999999999999999999999999999999
Q ss_pred HHH----hCcccHHHHHHHHHHHHHHHHHhc-HHHHHHHHHHHH
Q 001292 564 LFI----SNGKLSKFARTVASAGRLHAKNML-ALDCVTRYARIL 602 (1106)
Q Consensus 564 ~LL----sDpelRk~r~~mGe~Are~ake~f-see~v~~Y~eLy 602 (1106)
+++ +|++. ..+|+.+|++.+.+.| |...++++..+.
T Consensus 705 ~ll~kll~dp~~---~~~ms~~a~~rV~~~FSW~~~A~~ll~l~ 745 (784)
T TIGR02470 705 DFFEKCDEDPSY---WQKISQGGLQRIYEKYTWKIYSERLLTLA 745 (784)
T ss_pred HHHHHhcCCHHH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 876 57877 5889999999986655 556666887775
No 42
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=1.3e-27 Score=264.36 Aligned_cols=328 Identities=16% Similarity=0.180 Sum_probs=240.8
Q ss_pred EEEEEeCCCCC--ChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHHHH--------------------HhHHHH-Hhh
Q 001292 224 RIGLILGNMAK--DSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLWEQ--------------------IAGQIS-ILG 280 (1106)
Q Consensus 224 RIalVlg~L~~--gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r~--------------------lg~lvk-iIr 280 (1106)
||+++...+.+ ||.+.++..++++|.++|++|+|++............ ...... .+.
T Consensus 1 kil~i~~~~~p~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAARGIEVAVLCASPEPKGRDEERNGHRVIRAPSLLNVASTPFSPSFFKQLKKL 80 (357)
T ss_pred CeeEecCCCCCCCCcHHHHHHHHHHHHHhCCCceEEEecCCCCcchhhhccCceEEEeecccccccccccHHHHHHHHhc
Confidence 57888777664 8999999999999999999999998865332111000 000011 134
Q ss_pred ccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEec
Q 001292 281 QEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFP 360 (1106)
Q Consensus 281 ~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~ 360 (1106)
..++|++|++............ . ..++|+|++.|+........... .+ ......++.+|.+++.
T Consensus 81 ~~~~Dii~~~~~~~~~~~~~~~--~--------~~~~~~i~~~h~~~~~~~~~~~~----~~--~~~~~~~~~~d~vi~~ 144 (357)
T cd03795 81 AKKADVIHLHFPNPLADLALLL--L--------PRKKPVVVHWHSDIVKQKLLLKL----YR--PLQRRFLRRADAIVAT 144 (357)
T ss_pred CCCCCEEEEecCcchHHHHHHH--h--------ccCceEEEEEcChhhccchhhhh----hh--HHHHHHHHhcCEEEeC
Confidence 6789999987654432211111 1 14789999999854332211100 11 1112357899999999
Q ss_pred CCChhhh--hcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHH
Q 001292 361 DYTLPML--YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVG 438 (1106)
Q Consensus 361 S~~~~~~--~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k 438 (1106)
+...... .......++.+||| |+|. ..+.+...... .......+.++|+++|++.. .||.+.+++|++
T Consensus 145 s~~~~~~~~~~~~~~~~~~~i~~-gi~~---~~~~~~~~~~~--~~~~~~~~~~~i~~~G~~~~----~K~~~~li~a~~ 214 (357)
T cd03795 145 SPNYAETSPVLRRFRDKVRVIPL-GLDP---ARYPRPDALEE--AIWRRAAGRPFFLFVGRLVY----YKGLDVLLEAAA 214 (357)
T ss_pred cHHHHHHHHHhcCCccceEEecC-CCCh---hhcCCcchhhh--HhhcCCCCCcEEEEeccccc----ccCHHHHHHHHH
Confidence 8766553 22222368889998 7987 44544321111 22344567889999999887 889999999997
Q ss_pred HhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCCh--hhHHHHHHHcCeEEEccCCCCCCCc
Q 001292 439 PLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFN--GDVNGVLLMADIVLYGSSQVEQGFP 516 (1106)
Q Consensus 439 ~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~--eDL~~LyaaADVfV~PS~~EeEGFG 516 (1106)
++. +++ ++++|.++.. +.++++++++++.+ +|.|+|.. +++..+|+.||++++||....|+||
T Consensus 215 ~l~-----------~~~-l~i~G~g~~~--~~~~~~~~~~~~~~-~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g 279 (357)
T cd03795 215 ALP-----------DAP-LVIVGEGPLE--AELEALAAALGLLD-RVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFG 279 (357)
T ss_pred hcc-----------CcE-EEEEeCChhH--HHHHHHHHhcCCcc-eEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccc
Confidence 653 456 6889999865 88999998899887 99999965 5699999999999999975335999
Q ss_pred HHHHHHHHhCCCEEecCCCCchhhhcc-CCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHH
Q 001292 517 SLIVRAMTFGIPVITPDFPIIKEYVAE-GAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCV 595 (1106)
Q Consensus 517 lvLLEAMA~G~PVIASD~gGI~EiV~D-g~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fsee~v 595 (1106)
++++|||++|+|||+++.++..+.+.+ +.+|++++++|+++++++|..+++|++. +++|++++++.++++|+.+.+
T Consensus 280 ~~~~Ea~~~g~Pvi~~~~~~~~~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~~~~---~~~~~~~~~~~~~~~~s~~~~ 356 (357)
T cd03795 280 IVLLEAMAFGKPVISTEIGTGGSYVNLHGVTGLVVPPGDPAALAEAIRRLLEDPEL---RERLGEAARERAEEEFTADRM 356 (357)
T ss_pred hHHHHHHHcCCCEEecCCCCchhHHhhCCCceEEeCCCCHHHHHHHHHHHHHCHHH---HHHHHHHHHHHHHHhcchHhh
Confidence 999999999999999999999999886 8899999999999999999999999987 689999999999999886643
No 43
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.97 E-value=2.2e-27 Score=255.95 Aligned_cols=343 Identities=19% Similarity=0.262 Sum_probs=256.5
Q ss_pred EEEEEeCCCCC--ChhHHHHHHHHHHHHHCCCEEEEEEcCCCCch-----------------------HHHHHHhHHHHH
Q 001292 224 RIGLILGNMAK--DSRSLLLITVVKNLQKLGYVFKIYAVRSGNSH-----------------------SLWEQIAGQISI 278 (1106)
Q Consensus 224 RIalVlg~L~~--gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~-----------------------~i~r~lg~lvki 278 (1106)
||+++.+.... +|....+..+++.|.+.|++|++++....... ............
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLRRL 80 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecCCcccccchhHHHHHHHHHHHHH
Confidence 57777777655 78999999999999999999999988543210 011111224566
Q ss_pred hhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEE
Q 001292 279 LGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIV 358 (1106)
Q Consensus 279 Ir~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VI 358 (1106)
+...++|+|+.+............+ ..++|+|+++|+......... ...............++.+|.++
T Consensus 81 ~~~~~~Dii~~~~~~~~~~~~~~~~----------~~~~~~i~~~h~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~i 149 (374)
T cd03801 81 LRRERFDVVHAHDWLALLAAALAAR----------LLGIPLVLTVHGLEFGRPGNE-LGLLLKLARALERRALRRADRII 149 (374)
T ss_pred hhhcCCcEEEEechhHHHHHHHHHH----------hcCCcEEEEeccchhhccccc-hhHHHHHHHHHHHHHHHhCCEEE
Confidence 7778999999988777665542222 268999999999533221110 00000111112234578999999
Q ss_pred ecCCChhhhhc---CCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHH
Q 001292 359 FPDYTLPMLYS---VLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMH 435 (1106)
Q Consensus 359 a~S~~~~~~~~---gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLe 435 (1106)
+.+........ ..+..++.++|+ |+|. ..+.+.. ...+.......+.++++++|++.. .|+.+.+++
T Consensus 150 ~~s~~~~~~~~~~~~~~~~~~~~i~~-~~~~---~~~~~~~--~~~~~~~~~~~~~~~i~~~g~~~~----~k~~~~~i~ 219 (374)
T cd03801 150 AVSEATREELRELGGVPPEKITVIPN-GVDT---ERFRPAP--RAARRRLGIPEDEPVILFVGRLVP----RKGVDLLLE 219 (374)
T ss_pred EecHHHHHHHHhcCCCCCCcEEEecC-cccc---cccCccc--hHHHhhcCCcCCCeEEEEecchhh----hcCHHHHHH
Confidence 99876665522 222368999998 7887 4444332 333445566677889999998876 889999999
Q ss_pred HHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCCh--hhHHHHHHHcCeEEEccCCCCC
Q 001292 436 DVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFN--GDVNGVLLMADIVLYGSSQVEQ 513 (1106)
Q Consensus 436 A~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~--eDL~~LyaaADVfV~PS~~EeE 513 (1106)
++..+... +++++ ++++|.++.. +.++++++++++.+ +|.+.|.. +++..+|+.||++++|+..+
T Consensus 220 ~~~~~~~~-------~~~~~-l~i~G~~~~~--~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~~di~i~~~~~~-- 286 (374)
T cd03801 220 ALAKLRKE-------YPDVR-LVIVGDGPLR--EELEALAAELGLGD-RVTFLGFVPDEDLPALYAAADVFVLPSLYE-- 286 (374)
T ss_pred HHHHHhhh-------cCCeE-EEEEeCcHHH--HHHHHHHHHhCCCc-ceEEEeccChhhHHHHHHhcCEEEecchhc--
Confidence 99877642 26787 6888877754 88888888889887 99999976 89999999999999999886
Q ss_pred CCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcH-H
Q 001292 514 GFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLA-L 592 (1106)
Q Consensus 514 GFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fs-e 592 (1106)
++|++++|||++|+|||+++.++..+++.++.+|++++..|+++++++|.++++|++. ..++++++++.+.+.++ +
T Consensus 287 ~~~~~~~Ea~~~g~pvI~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 363 (374)
T cd03801 287 GFGLVLLEAMAAGLPVVASDVGGIPEVVEDGETGLLVPPGDPEALAEAILRLLDDPEL---RRRLGEAARERVAERFSWD 363 (374)
T ss_pred cccchHHHHHHcCCcEEEeCCCChhHHhcCCcceEEeCCCCHHHHHHHHHHHHcChHH---HHHHHHHHHHHHHHhcCHH
Confidence 9999999999999999999999999999988999999999999999999999999987 68899999966655554 5
Q ss_pred HHHHHHHHHHH
Q 001292 593 DCVTRYARILE 603 (1106)
Q Consensus 593 e~v~~Y~eLye 603 (1106)
..+..+.++|+
T Consensus 364 ~~~~~~~~~~~ 374 (374)
T cd03801 364 RVAARTEEVYY 374 (374)
T ss_pred HHHHHHHHhhC
Confidence 55668887763
No 44
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.96 E-value=2.2e-27 Score=257.03 Aligned_cols=330 Identities=19% Similarity=0.267 Sum_probs=240.4
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCch-------------------HHH---HHHhHHHHHhhc
Q 001292 224 RIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSH-------------------SLW---EQIAGQISILGQ 281 (1106)
Q Consensus 224 RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~-------------------~i~---r~lg~lvkiIr~ 281 (1106)
||+++++. .+|....+..+++.|.+.|++|++++..+.... ..+ .....+.+.++.
T Consensus 1 kIl~i~~~--~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (359)
T cd03808 1 KILHIVTV--DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEALGVKVIPIPLDRRGINPFKDLKALLRLYRLLRK 78 (359)
T ss_pred CeeEEEec--chhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccccCCceEEeccccccccChHhHHHHHHHHHHHHHh
Confidence 57788777 678889999999999999999999987543210 011 112225566777
Q ss_pred cCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHH-HHHHHhccccEEEec
Q 001292 282 EQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLS-YWKSVFSRVNVIVFP 360 (1106)
Q Consensus 282 ~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis-~~~~~l~~AD~VIa~ 360 (1106)
.++|+++.+.....++..+..+.. ...++++..|+.......... . ..... ..+..++.+|.+++.
T Consensus 79 ~~~dvv~~~~~~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~d~ii~~ 145 (359)
T cd03808 79 ERPDIVHTHTPKPGILGRLAARLA---------GVPKVIYTVHGLGFVFTSGGL-K---RRLYLLLERLALRFTDKVIFQ 145 (359)
T ss_pred cCCCEEEEccccchhHHHHHHHHc---------CCCCEEEEecCcchhhccchh-H---HHHHHHHHHHHHhhccEEEEc
Confidence 899999998777666666655422 456888888885322211110 1 11111 123456788999999
Q ss_pred CCChhhhh--cC-CCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHH
Q 001292 361 DYTLPMLY--SV-LDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDV 437 (1106)
Q Consensus 361 S~~~~~~~--~g-i~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~ 437 (1106)
+....... .+ .+..+..++++.++|. +.+.+.... ...+.++++++|++.. .|+.+.+++++
T Consensus 146 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--------~~~~~~~i~~~G~~~~----~k~~~~li~~~ 210 (359)
T cd03808 146 NEDDRDLALKLGIIKKKKTVLIPGSGVDL---DRFSPSPEP--------IPEDDPVFLFVARLLK----DKGIDELLEAA 210 (359)
T ss_pred CHHHHHHHHHhcCCCcCceEEecCCCCCh---hhcCccccc--------cCCCCcEEEEEecccc----ccCHHHHHHHH
Confidence 87665552 12 2213334444447886 444332110 2456789999999887 88999999999
Q ss_pred HHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHH-HHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCc
Q 001292 438 GPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQE-VASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFP 516 (1106)
Q Consensus 438 k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLke-LaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFG 516 (1106)
+.+.+ .+++++ ++++|.++.. ..... ++.+.+..+ +|.+.|+.+++..+|+.||++++||..| ++|
T Consensus 211 ~~l~~-------~~~~~~-l~i~G~~~~~--~~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~adi~i~ps~~e--~~~ 277 (359)
T cd03808 211 RILKA-------KGPNVR-LLLVGDGDEE--NPAAILEIEKLGLEG-RVEFLGFRDDVPELLAAADVFVLPSYRE--GLP 277 (359)
T ss_pred HHHHh-------cCCCeE-EEEEcCCCcc--hhhHHHHHHhcCCcc-eEEEeeccccHHHHHHhccEEEecCccc--Ccc
Confidence 87753 237888 6888988765 33333 266667776 8999999999999999999999999986 999
Q ss_pred HHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHH-
Q 001292 517 SLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCV- 595 (1106)
Q Consensus 517 lvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fsee~v- 595 (1106)
++++|||++|+|||+++.++..+++.++.+|++++++|+++++++|..++.|++. ..++++++++.+.+.|+.+.+
T Consensus 278 ~~~~Ea~~~G~Pvi~s~~~~~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~~~~---~~~~~~~~~~~~~~~~s~~~~~ 354 (359)
T cd03808 278 RVLLEAMAMGRPVIATDVPGCREAVIDGVNGFLVPPGDAEALADAIERLIEDPEL---RARMGQAARKRAEEEFDEEIVV 354 (359)
T ss_pred hHHHHHHHcCCCEEEecCCCchhhhhcCcceEEECCCCHHHHHHHHHHHHhCHHH---HHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999999999999999999999989999999999999999999999999987 688999999997777765444
Q ss_pred HHHH
Q 001292 596 TRYA 599 (1106)
Q Consensus 596 ~~Y~ 599 (1106)
..|.
T Consensus 355 ~~~~ 358 (359)
T cd03808 355 KKLL 358 (359)
T ss_pred HHhh
Confidence 3553
No 45
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.96 E-value=1.1e-27 Score=278.01 Aligned_cols=337 Identities=11% Similarity=0.136 Sum_probs=222.6
Q ss_pred CEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchH----------------------HH----------H
Q 001292 223 PRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHS----------------------LW----------E 270 (1106)
Q Consensus 223 ~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~----------------------i~----------r 270 (1106)
+||++|...+..||.+..+..|++.|.+.|++|.++......... .. .
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESVSHQNYPQVIKHTPRMTAMANIALFRLFNRDLFG 80 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHhcCCeEEEEEecCCCcccccccCCcceEEEecccHHHHHHHHHHHhcchhhcc
Confidence 589999999999999999999999999999999998875331110 00 0
Q ss_pred HHhHHHHHh-hccCccEEEEccccHHHHHHH--HHHHhhhhcccCCCCCCcEEEEEcCCc-cc----------ccc----
Q 001292 271 QIAGQISIL-GQEQYSLIDWSIFDGIIADSL--EAKEAISSLMQEPFHSIPLVWIIQEDS-LA----------NRL---- 332 (1106)
Q Consensus 271 ~lg~lvkiI-r~~~pDiIh~~~~~~i~v~~L--a~k~~idII~te~~~gIPVI~tIHna~-Ls----------~r~---- 332 (1106)
......+.| +..+||+||+|.+.+.++... ..... ++ .....++|+|||.|+.- +. .+.
T Consensus 81 ~~~~~~~~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~--~~-~~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~c~ 157 (405)
T PRK10125 81 NFNELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCE--KV-KNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQ 157 (405)
T ss_pred hHHHHHHHHhhccCCCEEEEecccCceecHHHHHHHHh--hh-hcccCCCCEEEecccccccCCCcCCCcccccccccCC
Confidence 011134444 568999999998887543321 11000 00 00035789999999921 11 100
Q ss_pred -----hhhhhhhH---HhH----HHHHHHHhccccEEEecCCChhhh-hcCCCCCCEEEeCCCCCCcccccccCcchhHH
Q 001292 333 -----PVYVERGF---QNL----LSYWKSVFSRVNVIVFPDYTLPML-YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKY 399 (1106)
Q Consensus 333 -----~~Y~~~gl---ekl----is~~~~~l~~AD~VIa~S~~~~~~-~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~ 399 (1106)
..|+.... .+. ...+...++.++.+|++|...... ...+...++.+||| |+|+ +.+.+.....
T Consensus 158 ~Cp~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~~~~~~~~~~i~vI~N-Gid~---~~~~~~~~~~ 233 (405)
T PRK10125 158 KCPTLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLYGPGRCRIINN-GIDM---ATEAILAELP 233 (405)
T ss_pred CCCCccCCCCCccchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHHHHHHcCCCCEEEeCC-CcCc---cccccccccc
Confidence 00211000 111 111223345567889988766555 22334578999998 8996 2222111111
Q ss_pred HHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcC
Q 001292 400 QLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLG 479 (1106)
Q Consensus 400 ~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklG 479 (1106)
..+ .+++.++|+++|+...+ + .|+++.+++|+..+. ++++ |+++|.++.. .
T Consensus 234 ~~~----~~~~~~~il~v~~~~~~-~-~Kg~~~li~A~~~l~----------~~~~-L~ivG~g~~~--~---------- 284 (405)
T PRK10125 234 PVR----ETQGKPKIAVVAHDLRY-D-GKTDQQLVREMMALG----------DKIE-LHTFGKFSPF--T---------- 284 (405)
T ss_pred ccc----cCCCCCEEEEEEecccc-C-CccHHHHHHHHHhCC----------CCeE-EEEEcCCCcc--c----------
Confidence 111 23467789999984321 2 589999999996542 4677 7889987643 1
Q ss_pred CCCCcEEEcCC---hhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHH
Q 001292 480 LLEHSVRHYGF---NGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPE 556 (1106)
Q Consensus 480 L~d~rV~flG~---~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~e 556 (1106)
.+ +|.++|. ..++..+|++||+||+||..| +||++++||||||+|||++++||++|++.++ +|++++++|++
T Consensus 285 -~~-~v~~~g~~~~~~~l~~~y~~aDvfV~pS~~E--gfp~vilEAmA~G~PVVat~~gG~~Eiv~~~-~G~lv~~~d~~ 359 (405)
T PRK10125 285 -AG-NVVNHGFETDKRKLMSALNQMDALVFSSRVD--NYPLILCEALSIGVPVIATHSDAAREVLQKS-GGKTVSEEEVL 359 (405)
T ss_pred -cc-ceEEecCcCCHHHHHHHHHhCCEEEECCccc--cCcCHHHHHHHcCCCEEEeCCCChHHhEeCC-cEEEECCCCHH
Confidence 12 5777774 357899999999999999976 9999999999999999999999999999775 99999999999
Q ss_pred HHHHHHHHHHhCcccHHH-HHHHHHHHHHHHHHhcH-HHHHHHHHHHHHHH
Q 001292 557 GLSRAFSLFISNGKLSKF-ARTVASAGRLHAKNMLA-LDCVTRYARILENV 605 (1106)
Q Consensus 557 eLAeAI~~LLsDpelRk~-r~~mGe~Are~ake~fs-ee~v~~Y~eLyesl 605 (1106)
+||+++ ++++++. ...+..++++.+.+.|+ +.++++|.++|+++
T Consensus 360 ~La~~~-----~~~~~~~~~~~~~~~~r~~~~~~fs~~~~~~~y~~lY~~l 405 (405)
T PRK10125 360 QLAQLS-----KPEIAQAVFGTTLAEFSQRSRAAYSGQQMLEEYVNFYQNL 405 (405)
T ss_pred HHHhcc-----CHHHHHHhhhhHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999854 3333100 01123457777777666 55566999999863
No 46
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.96 E-value=9e-27 Score=252.78 Aligned_cols=336 Identities=19% Similarity=0.254 Sum_probs=251.7
Q ss_pred EEEEeCCCCC---ChhHHHHHHHHHHHHHCCCEEEEEEcCCCCch-----------------------------HHHHHH
Q 001292 225 IGLILGNMAK---DSRSLLLITVVKNLQKLGYVFKIYAVRSGNSH-----------------------------SLWEQI 272 (1106)
Q Consensus 225 IalVlg~L~~---gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~-----------------------------~i~r~l 272 (1106)
|+++.+.... +|.+..+..+++.|.+.|++|++++....... ..+...
T Consensus 1 iLii~~~~p~~~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (377)
T cd03798 1 ILVISSLYPPPNNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYLLAA 80 (377)
T ss_pred CeEeccCCCCCCCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcccccccccccccCcchhhccccchhHHHHH
Confidence 4566666654 88999999999999999999999987442110 011122
Q ss_pred hHHHHHhh--ccCccEEEEccccHHHH-HHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHH
Q 001292 273 AGQISILG--QEQYSLIDWSIFDGIIA-DSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKS 349 (1106)
Q Consensus 273 g~lvkiIr--~~~pDiIh~~~~~~i~v-~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~ 349 (1106)
..+...++ ..++|+|+.+....... .....+ ..++|+++++|+.......... ........
T Consensus 81 ~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~----------~~~~~~i~~~h~~~~~~~~~~~------~~~~~~~~ 144 (377)
T cd03798 81 RALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKR----------KLGIPLVVTLHGSDVNLLPRKR------LLRALLRR 144 (377)
T ss_pred HHHHHHHhcccCCCCEEEEeccchHHHHHHHHHH----------hcCCCEEEEeecchhcccCchh------hHHHHHHH
Confidence 22566776 78999998875443222 222221 2568999999995433221111 11222345
Q ss_pred HhccccEEEecCCChhhhhcC--CCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCcccccc
Q 001292 350 VFSRVNVIVFPDYTLPMLYSV--LDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELS 427 (1106)
Q Consensus 350 ~l~~AD~VIa~S~~~~~~~~g--i~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~ 427 (1106)
.++.+|.+++.+......... .+..++.++|+ |+|. ..+.+...... ...+...+.++++++|++.. .
T Consensus 145 ~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~i~~-~~~~---~~~~~~~~~~~--~~~~~~~~~~~i~~~g~~~~----~ 214 (377)
T cd03798 145 ALRRADAVIAVSEALADELKALGIDPEKVTVIPN-GVDT---ERFSPADRAEA--RKLGLPEDKKVILFVGRLVP----R 214 (377)
T ss_pred HHhcCCeEEeCCHHHHHHHHHhcCCCCceEEcCC-CcCc---ccCCCcchHHH--HhccCCCCceEEEEeccCcc----c
Confidence 678999999999776666333 47788999998 7886 44544322221 34455667889999998877 8
Q ss_pred CCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCCh--hhHHHHHHHcCeEE
Q 001292 428 WDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFN--GDVNGVLLMADIVL 505 (1106)
Q Consensus 428 Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~--eDL~~LyaaADVfV 505 (1106)
|+.+.++++++.+.++ +++++ ++++|.++.. +.++++++.+++.+ +|.+.|.. +++..+|..||+++
T Consensus 215 k~~~~li~~~~~~~~~-------~~~~~-l~i~g~~~~~--~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~ad~~i 283 (377)
T cd03798 215 KGIDYLIEALARLLKK-------RPDVH-LVIVGDGPLR--EALEALAAELGLED-RVTFLGAVPHEEVPAYYAAADVFV 283 (377)
T ss_pred cCHHHHHHHHHHHHhc-------CCCeE-EEEEcCCcch--HHHHHHHHhcCCcc-eEEEeCCCCHHHHHHHHHhcCeee
Confidence 8999999999877632 37787 6889998865 88888888889887 89999955 67999999999999
Q ss_pred EccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Q 001292 506 YGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLH 585 (1106)
Q Consensus 506 ~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ 585 (1106)
+||..+ ++|++++|||++|+|||+++.++..+++.++.+|+++++.|+++++++|.+++++++. +++.++++.
T Consensus 284 ~~~~~~--~~~~~~~Ea~~~G~pvI~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~-----~~~~~~~~~ 356 (377)
T cd03798 284 LPSLRE--GFGLVLLEAMACGLPVVATDVGGIPEIITDGENGLLVPPGDPEALAEAILRLLADPWL-----RLGRAARRR 356 (377)
T ss_pred cchhhc--cCChHHHHHHhcCCCEEEecCCChHHHhcCCcceeEECCCCHHHHHHHHHHHhcCcHH-----HHhHHHHHH
Confidence 999986 9999999999999999999999999999999999999999999999999999999872 566677777
Q ss_pred HHHhcHH-HHHHHHHHHHHH
Q 001292 586 AKNMLAL-DCVTRYARILEN 604 (1106)
Q Consensus 586 ake~fse-e~v~~Y~eLyes 604 (1106)
+.+.++. ..+..+.++|++
T Consensus 357 ~~~~~s~~~~~~~~~~~~~~ 376 (377)
T cd03798 357 VAERFSWENVAERLLELYRE 376 (377)
T ss_pred HHHHhhHHHHHHHHHHHHhh
Confidence 7776664 455588888875
No 47
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.96 E-value=4.9e-27 Score=258.32 Aligned_cols=305 Identities=15% Similarity=0.102 Sum_probs=226.1
Q ss_pred CEEEEEeCCC------CCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCch--------------------HHHHHHhHHH
Q 001292 223 PRIGLILGNM------AKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSH--------------------SLWEQIAGQI 276 (1106)
Q Consensus 223 ~RIalVlg~L------~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~--------------------~i~r~lg~lv 276 (1106)
+||++|.+.+ ..||.+..+..+++.|.+.||+|++++....... ........+.
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAAPLVPVVPEPLRLDAPGRDRAEAEALALAE 80 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccceeeccCCCcccccchhhHhhHHHHHHHH
Confidence 5899999887 6699999999999999999999999987543210 0111222256
Q ss_pred HHhhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccE
Q 001292 277 SILGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNV 356 (1106)
Q Consensus 277 kiIr~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~ 356 (1106)
+.++..++|+||.+......+ ... ..++|+|+++|+........ ........+.
T Consensus 81 ~~~~~~~~Divh~~~~~~~~~--~~~-----------~~~~~~v~~~h~~~~~~~~~-------------~~~~~~~~~~ 134 (335)
T cd03802 81 RALAAGDFDIVHNHSLHLPLP--FAR-----------PLPVPVVTTLHGPPDPELLK-------------LYYAARPDVP 134 (335)
T ss_pred HHHhcCCCCEEEecCcccchh--hhc-----------ccCCCEEEEecCCCCcccch-------------HHHhhCcCCe
Confidence 677788999999988776655 211 26789999999964221111 1123456667
Q ss_pred EEecCCChhhhhcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHH
Q 001292 357 IVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHD 436 (1106)
Q Consensus 357 VIa~S~~~~~~~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA 436 (1106)
+++.+.......... .++.+||| |+|. +.|.+. +.++.+++++|++.. .||.+.++++
T Consensus 135 ~~~~s~~~~~~~~~~--~~~~vi~n-gvd~---~~~~~~------------~~~~~~i~~~Gr~~~----~Kg~~~li~~ 192 (335)
T cd03802 135 FVSISDAQRRPWPPL--PWVATVHN-GIDL---DDYPFR------------GPKGDYLLFLGRISP----EKGPHLAIRA 192 (335)
T ss_pred EEEecHHHHhhcccc--cccEEecC-CcCh---hhCCCC------------CCCCCEEEEEEeecc----ccCHHHHHHH
Confidence 777776655543332 68899998 7997 555431 234568999999877 8999999998
Q ss_pred HHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcC-CCCCcEEEcCCh--hhHHHHHHHcCeEEEccCCCCC
Q 001292 437 VGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLG-LLEHSVRHYGFN--GDVNGVLLMADIVLYGSSQVEQ 513 (1106)
Q Consensus 437 ~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklG-L~d~rV~flG~~--eDL~~LyaaADVfV~PS~~EeE 513 (1106)
++. .+++ |+++|.++.. +.+........ +.+ +|.|+|+. .++..+|+.+|++++||... |
T Consensus 193 ~~~------------~~~~-l~i~G~~~~~--~~~~~~~~~~~~~~~-~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~-E 255 (335)
T cd03802 193 ARR------------AGIP-LKLAGPVSDP--DYFYREIAPELLDGP-DIEYLGEVGGAEKAELLGNARALLFPILWE-E 255 (335)
T ss_pred HHh------------cCCe-EEEEeCCCCH--HHHHHHHHHhcccCC-cEEEeCCCCHHHHHHHHHhCcEEEeCCccc-C
Confidence 742 3566 6889998764 66666555544 455 89999965 56889999999999999863 4
Q ss_pred CCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcH-H
Q 001292 514 GFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLA-L 592 (1106)
Q Consensus 514 GFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fs-e 592 (1106)
+||++++||||||+|||++|.+++.|++.++.+|++++. +++++++|..+++.+. +++++.+.+.|+ +
T Consensus 256 ~~~~~~lEAma~G~PvI~~~~~~~~e~i~~~~~g~l~~~--~~~l~~~l~~l~~~~~---------~~~~~~~~~~~s~~ 324 (335)
T cd03802 256 PFGLVMIEAMACGTPVIAFRRGAVPEVVEDGVTGFLVDS--VEELAAAVARADRLDR---------AACRRRAERRFSAA 324 (335)
T ss_pred CcchHHHHHHhcCCCEEEeCCCCchhheeCCCcEEEeCC--HHHHHHHHHHHhccHH---------HHHHHHHHHhCCHH
Confidence 999999999999999999999999999999999999975 9999999999865432 245556656655 5
Q ss_pred HHHHHHHHHHH
Q 001292 593 DCVTRYARILE 603 (1106)
Q Consensus 593 e~v~~Y~eLye 603 (1106)
..+.+|.++|+
T Consensus 325 ~~~~~~~~~y~ 335 (335)
T cd03802 325 RMVDDYLALYR 335 (335)
T ss_pred HHHHHHHHHhC
Confidence 56669999884
No 48
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.96 E-value=8.7e-28 Score=283.61 Aligned_cols=282 Identities=19% Similarity=0.235 Sum_probs=219.1
Q ss_pred cCccEEEEcccc-HHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccc---------hhhhhhhHHhHHHHH-HHH
Q 001292 282 EQYSLIDWSIFD-GIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRL---------PVYVERGFQNLLSYW-KSV 350 (1106)
Q Consensus 282 ~~pDiIh~~~~~-~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~---------~~Y~~~gleklis~~-~~~ 350 (1106)
.++|++|.+... ..++..+..+ ..++|+|++.|+.....+. ..+....+.++...+ ..+
T Consensus 172 ~~~dviH~~s~~~~g~~~~~~~~----------~~~~p~I~t~Hg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (475)
T cd03813 172 PKADVYHAVSTGYAGLLGALAKA----------RRGTPFLLTEHGIYTRERKIELLQADWEMSYFRRLWIRFFESLGRLA 241 (475)
T ss_pred CCCCEEeccCcchHHHHHHHHHH----------HhCCCEEEecCCccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence 578999998643 3334444433 2689999999994322111 000000011111111 346
Q ss_pred hccccEEEecCCChhhh--hcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccC
Q 001292 351 FSRVNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSW 428 (1106)
Q Consensus 351 l~~AD~VIa~S~~~~~~--~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~K 428 (1106)
++.||.|++.+...... ..+.+++|+.+||| |+|. +.|.+.... ...++.++|+++||+.+ .|
T Consensus 242 ~~~ad~Ii~~s~~~~~~~~~~g~~~~ki~vIpN-gid~---~~f~~~~~~-------~~~~~~~~i~~vGrl~~----~K 306 (475)
T cd03813 242 YQAADRITTLYEGNRERQIEDGADPEKIRVIPN-GIDP---ERFAPARRA-------RPEKEPPVVGLIGRVVP----IK 306 (475)
T ss_pred HHhCCEEEecCHHHHHHHHHcCCCHHHeEEeCC-CcCH---HHcCCcccc-------ccCCCCcEEEEEecccc----cc
Confidence 78999999998765544 45777889999998 8997 566543211 23457789999999988 89
Q ss_pred CHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCC--ccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEE
Q 001292 429 DYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTD--GYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLY 506 (1106)
Q Consensus 429 g~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~Gpe--rY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~ 506 (1106)
|++.+++|++.+.++ .|+++ ++|+|.+++ .|.++++++++++|+.+ +|.|+| ..++.++|+.+|++|+
T Consensus 307 g~~~li~a~~~l~~~-------~p~~~-l~IvG~g~~~~~~~~e~~~li~~l~l~~-~V~f~G-~~~v~~~l~~aDv~vl 376 (475)
T cd03813 307 DIKTFIRAAAIVRKK-------IPDAE-GWVIGPTDEDPEYAEECRELVESLGLED-NVKFTG-FQNVKEYLPKLDVLVL 376 (475)
T ss_pred CHHHHHHHHHHHHHh-------CCCeE-EEEECCCCcChHHHHHHHHHHHHhCCCC-eEEEcC-CccHHHHHHhCCEEEe
Confidence 999999999887643 38888 688888743 36788899999999987 999999 7799999999999999
Q ss_pred ccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhcc------CCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHH
Q 001292 507 GSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAE------GAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVAS 580 (1106)
Q Consensus 507 PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~D------g~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe 580 (1106)
||..| +||++++||||||+|||+++.++++|++.+ |.+|+++++.|+++++++|.++++|++. +.+|++
T Consensus 377 pS~~E--g~p~~vlEAma~G~PVVatd~g~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~~~~---~~~~~~ 451 (475)
T cd03813 377 TSISE--GQPLVILEAMAAGIPVVATDVGSCRELIEGADDEALGPAGEVVPPADPEALARAILRLLKDPEL---RRAMGE 451 (475)
T ss_pred Cchhh--cCChHHHHHHHcCCCEEECCCCChHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcCHHH---HHHHHH
Confidence 99986 999999999999999999999999999988 5699999999999999999999999987 688999
Q ss_pred HHHHHHHHhcH-HHHHHHHHHHHH
Q 001292 581 AGRLHAKNMLA-LDCVTRYARILE 603 (1106)
Q Consensus 581 ~Are~ake~fs-ee~v~~Y~eLye 603 (1106)
+|++.++++|+ +.++++|.++|+
T Consensus 452 ~a~~~v~~~~s~~~~~~~y~~lY~ 475 (475)
T cd03813 452 AGRKRVERYYTLERMIDSYRRLYL 475 (475)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhC
Confidence 99999999887 556669999884
No 49
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.96 E-value=1.1e-26 Score=258.07 Aligned_cols=331 Identities=13% Similarity=0.117 Sum_probs=227.1
Q ss_pred EEEEEeCC-C--CCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCch--HH--------------------HHHHhHHHHH
Q 001292 224 RIGLILGN-M--AKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSH--SL--------------------WEQIAGQISI 278 (1106)
Q Consensus 224 RIalVlg~-L--~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~--~i--------------------~r~lg~lvki 278 (1106)
|||+|... + ..||.+..+..+++.|+++|++|+|++..+.... .. ...+..+...
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVARGHEVTVYCRSPYPKQKETEYNGVRLIHIPAPEIGGLGTIIYDILAILHA 80 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCcccccCCceEEEcCCCCccchhhhHHHHHHHHHH
Confidence 57777443 3 3389999999999999999999999987543211 00 0001111111
Q ss_pred h-hccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHH-HHHhccccE
Q 001292 279 L-GQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYW-KSVFSRVNV 356 (1106)
Q Consensus 279 I-r~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~-~~~l~~AD~ 356 (1106)
+ ....++++|...+....+..+.. ..++|+|+++|+............ .++.... ...++.+|.
T Consensus 81 ~~~~~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~v~~~h~~~~~~~~~~~~~---~~~~~~~~~~~~~~ad~ 146 (363)
T cd04955 81 LFVKRDIDHVHALGPAIAPFLPLLR-----------LKGKKVVVNMDGLEWKRAKWGRPA---KRYLKFGEKLAVKFADR 146 (363)
T ss_pred HhccCCeEEEEecCccHHHHHHHHH-----------hcCCCEEEEccCcceeecccccch---hHHHHHHHHHHHhhccE
Confidence 1 13344455544444323322222 147899999998543221110001 1111111 234678999
Q ss_pred EEecCCChhhhh-cCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHH
Q 001292 357 IVFPDYTLPMLY-SVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMH 435 (1106)
Q Consensus 357 VIa~S~~~~~~~-~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLe 435 (1106)
|++.|....... ...+... .+||| |+|. ..+.+ ....+..+++.++. .++++||+.. .||.+.+++
T Consensus 147 ii~~s~~~~~~~~~~~~~~~-~~i~n-gv~~---~~~~~---~~~~~~~~~~~~~~-~i~~~G~~~~----~Kg~~~li~ 213 (363)
T cd04955 147 LIADSPGIKEYLKEKYGRDS-TYIPY-GADH---VVSSE---EDEILKKYGLEPGR-YYLLVGRIVP----ENNIDDLIE 213 (363)
T ss_pred EEeCCHHHHHHHHHhcCCCC-eeeCC-CcCh---hhcch---hhhhHHhcCCCCCc-EEEEEecccc----cCCHHHHHH
Confidence 999997766553 2333333 78898 7887 33332 22345566665554 6789999887 899999999
Q ss_pred HHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHH-HcCCCCCcEEEcCCh--hhHHHHHHHcCeEEEccCCCC
Q 001292 436 DVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVAS-RLGLLEHSVRHYGFN--GDVNGVLLMADIVLYGSSQVE 512 (1106)
Q Consensus 436 A~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLae-klGL~d~rV~flG~~--eDL~~LyaaADVfV~PS~~Ee 512 (1106)
|++.+. .+++ |+++|.++.. ..+.+.+. .+++.+ +|+++|+. +++..+|..||++++||...
T Consensus 214 a~~~l~----------~~~~-l~ivG~~~~~--~~~~~~~~~~~~~~~-~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~- 278 (363)
T cd04955 214 AFSKSN----------SGKK-LVIVGNADHN--TPYGKLLKEKAAADP-RIIFVGPIYDQELLELLRYAALFYLHGHSV- 278 (363)
T ss_pred HHHhhc----------cCce-EEEEcCCCCc--chHHHHHHHHhCCCC-cEEEccccChHHHHHHHHhCCEEEeCCccC-
Confidence 997653 2567 6888988654 44544444 677776 89999954 67899999999999999982
Q ss_pred CCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhc-H
Q 001292 513 QGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNML-A 591 (1106)
Q Consensus 513 EGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~f-s 591 (1106)
|+||++++||||||+|||+++.++..|++.+ +|.++++.|+ ++++|..+++|++. +.++++++++.+.+.| |
T Consensus 279 e~~~~~~~EAma~G~PvI~s~~~~~~e~~~~--~g~~~~~~~~--l~~~i~~l~~~~~~---~~~~~~~~~~~~~~~fs~ 351 (363)
T cd04955 279 GGTNPSLLEAMAYGCPVLASDNPFNREVLGD--KAIYFKVGDD--LASLLEELEADPEE---VSAMAKAARERIREKYTW 351 (363)
T ss_pred CCCChHHHHHHHcCCCEEEecCCccceeecC--CeeEecCchH--HHHHHHHHHhCHHH---HHHHHHHHHHHHHHhCCH
Confidence 4999999999999999999999999999955 7888887765 99999999999977 6889999999988755 5
Q ss_pred HHHHHHHHHHHH
Q 001292 592 LDCVTRYARILE 603 (1106)
Q Consensus 592 ee~v~~Y~eLye 603 (1106)
+.++++|.++|+
T Consensus 352 ~~~~~~~~~~y~ 363 (363)
T cd04955 352 EKIADQYEELYK 363 (363)
T ss_pred HHHHHHHHHHhC
Confidence 666669998874
No 50
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.96 E-value=2.3e-27 Score=260.93 Aligned_cols=334 Identities=17% Similarity=0.151 Sum_probs=244.0
Q ss_pred EEEEEeCCCCC---ChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchH----------------------HHHHHhHHHHH
Q 001292 224 RIGLILGNMAK---DSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHS----------------------LWEQIAGQISI 278 (1106)
Q Consensus 224 RIalVlg~L~~---gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~----------------------i~r~lg~lvki 278 (1106)
||++++..+.. ||.+..+..++++|.+.|++|++++...+.... ...........
T Consensus 1 ~ili~~~~~~~~~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (365)
T cd03809 1 RILIDARFLASRRPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLRAALRLLLRLPRRLLWGLLFLLRAGDRLL 80 (365)
T ss_pred CEEEechhhhcCCCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccchhccccccccccccccchhhHHHHHHHHH
Confidence 57888888766 999999999999999999999999875432110 00111112334
Q ss_pred hhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEE
Q 001292 279 LGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIV 358 (1106)
Q Consensus 279 Ir~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VI 358 (1106)
+...++|++|.+.....+. . ..++|+|+++|+.........................++.+|.++
T Consensus 81 ~~~~~~Dii~~~~~~~~~~----~-----------~~~~~~i~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 145 (365)
T cd03809 81 LLLLGLDLLHSPHNTAPLL----R-----------LRGVPVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAII 145 (365)
T ss_pred hhhcCCCeeeecccccCcc----c-----------CCCCCEEEEeccchhhhCcccCCHHHHHHHHHHHHHHHHHcCEEE
Confidence 4446788888876665444 1 368999999998421111111010001111222345678999999
Q ss_pred ecCCChhhh---hcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHH
Q 001292 359 FPDYTLPML---YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMH 435 (1106)
Q Consensus 359 a~S~~~~~~---~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLe 435 (1106)
+.+...... ..+.+..++.++|| |+|. ..+.+..... +.......+.++|+++|++.+ .||.+.+++
T Consensus 146 ~~s~~~~~~~~~~~~~~~~~~~vi~~-~~~~---~~~~~~~~~~--~~~~~~~~~~~~i~~~G~~~~----~K~~~~~l~ 215 (365)
T cd03809 146 TVSEATKRDLLRYLGVPPDKIVVIPL-GVDP---RFRPPPAEAE--VLRALYLLPRPYFLYVGTIEP----RKNLERLLE 215 (365)
T ss_pred EccHHHHHHHHHHhCcCHHHEEeecc-ccCc---cccCCCchHH--HHHHhcCCCCCeEEEeCCCcc----ccCHHHHHH
Confidence 998765554 23445678999998 7887 4443332222 334455667889999999887 899999999
Q ss_pred HHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCCh--hhHHHHHHHcCeEEEccCCCCC
Q 001292 436 DVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFN--GDVNGVLLMADIVLYGSSQVEQ 513 (1106)
Q Consensus 436 A~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~--eDL~~LyaaADVfV~PS~~EeE 513 (1106)
++..+.+.. ++++ |+++|.+...+ ....+.++.+++.+ +|++.|.. +++..+|+.||++++||..|
T Consensus 216 ~~~~~~~~~-------~~~~-l~i~G~~~~~~-~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e-- 283 (365)
T cd03809 216 AFARLPAKG-------PDPK-LVIVGKRGWLN-EELLARLRELGLGD-RVRFLGYVSDEELAALYRGARAFVFPSLYE-- 283 (365)
T ss_pred HHHHHHHhc-------CCCC-EEEecCCcccc-HHHHHHHHHcCCCC-eEEECCCCChhHHHHHHhhhhhhcccchhc--
Confidence 998876432 4566 57788765542 33444446778887 99999966 78999999999999999886
Q ss_pred CCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHH
Q 001292 514 GFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALD 593 (1106)
Q Consensus 514 GFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fsee 593 (1106)
++|++++||||+|+|||+++.+++.|++ +.+|+++++.|+++++++|.++++|++. +.++++++++.++++.|+.
T Consensus 284 ~~~~~~~Ea~a~G~pvI~~~~~~~~e~~--~~~~~~~~~~~~~~~~~~i~~l~~~~~~---~~~~~~~~~~~~~~~sw~~ 358 (365)
T cd03809 284 GFGLPVLEAMACGTPVIASNISSLPEVA--GDAALYFDPLDPEALAAAIERLLEDPAL---REELRERGLARAKRFSWEK 358 (365)
T ss_pred cCCCCHHHHhcCCCcEEecCCCCcccee--cCceeeeCCCCHHHHHHHHHHHhcCHHH---HHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999999999999998 4579999999999999999999999988 6889999998888888888
Q ss_pred HHHHHH
Q 001292 594 CVTRYA 599 (1106)
Q Consensus 594 ~v~~Y~ 599 (1106)
.+++|.
T Consensus 359 ~~~~~~ 364 (365)
T cd03809 359 TARRTL 364 (365)
T ss_pred HHHHHh
Confidence 877664
No 51
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.96 E-value=1.4e-26 Score=253.03 Aligned_cols=318 Identities=16% Similarity=0.183 Sum_probs=232.8
Q ss_pred EEEEEeCCCCC---ChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHH-------------------------H------
Q 001292 224 RIGLILGNMAK---DSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSL-------------------------W------ 269 (1106)
Q Consensus 224 RIalVlg~L~~---gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i-------------------------~------ 269 (1106)
||+++.+.... +|.+.++..++++|.++|++|++++......... +
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKEVIGVVVYGRPIDEVLRSALPRDLFHLSDYD 80 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccccceeeccccccccCCCchhhhhHHHhcc
Confidence 57888777655 6899999999999999999999998754321000 0
Q ss_pred --HHHhHHHHHhhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHH
Q 001292 270 --EQIAGQISILGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYW 347 (1106)
Q Consensus 270 --r~lg~lvkiIr~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~ 347 (1106)
.....+.++++..++|+||.+.+.......+.... ..++|+|+++|+..... +. ..
T Consensus 81 ~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~---------~~~~~~i~~~hd~~~~~-----~~---~~----- 138 (359)
T cd03823 81 NPAVVAEFARLLEDFRPDVVHFHHLQGLGVSILRAAR---------DRGIPIVLTLHDYWLIC-----PR---QG----- 138 (359)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCccchHHHHHHHHH---------hcCCCEEEEEeeeeeec-----ch---hh-----
Confidence 01112456677789999999876433222221111 25689999999852110 00 00
Q ss_pred HHHhccccEEEecCCChhhh--hcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCcccc
Q 001292 348 KSVFSRVNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNE 425 (1106)
Q Consensus 348 ~~~l~~AD~VIa~S~~~~~~--~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~k 425 (1106)
......|.+++.+...... ..+....++.+|+| |+|. ..+.+... +.+.+.++++++|++..
T Consensus 139 -~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~vi~n-~~~~---~~~~~~~~--------~~~~~~~~i~~~G~~~~--- 202 (359)
T cd03823 139 -LFKKGGDAVIAPSRFLLDRYVANGLFAEKISVIRN-GIDL---DRAKRPRR--------APPGGRLRFGFIGQLTP--- 202 (359)
T ss_pred -hhccCCCEEEEeCHHHHHHHHHcCCCccceEEecC-CcCh---hhcccccc--------CCCCCceEEEEEecCcc---
Confidence 1112338889888665554 22334568999998 7887 33332211 34567789999999877
Q ss_pred ccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCCh--hhHHHHHHHcCe
Q 001292 426 LSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFN--GDVNGVLLMADI 503 (1106)
Q Consensus 426 g~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~--eDL~~LyaaADV 503 (1106)
.|+.+.++++++.+.. ++++ ++++|.++.. ....... +..+ +|.+.|+. +++..+|+.||+
T Consensus 203 -~k~~~~li~~~~~l~~---------~~~~-l~i~G~~~~~--~~~~~~~---~~~~-~v~~~g~~~~~~~~~~~~~ad~ 265 (359)
T cd03823 203 -HKGVDLLLEAFKRLPR---------GDIE-LVIVGNGLEL--EEESYEL---EGDP-RVEFLGAYPQEEIDDFYAEIDV 265 (359)
T ss_pred -ccCHHHHHHHHHHHHh---------cCcE-EEEEcCchhh--hHHHHhh---cCCC-eEEEeCCCCHHHHHHHHHhCCE
Confidence 8899999999987652 4667 6888988764 3332222 4555 89999976 899999999999
Q ss_pred EEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Q 001292 504 VLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGR 583 (1106)
Q Consensus 504 fV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Ar 583 (1106)
+++||... |++|++++|||+||+|||+++.+++.+++.++.+|++++++|+++++++|..+++|++. .++++++++
T Consensus 266 ~i~ps~~~-e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~---~~~~~~~~~ 341 (359)
T cd03823 266 LVVPSIWP-ENFPLVIREALAAGVPVIASDIGGMAELVRDGVNGLLFPPGDAEDLAAALERLIDDPDL---LERLRAGIE 341 (359)
T ss_pred EEEcCccc-CCCChHHHHHHHCCCCEEECCCCCHHHHhcCCCcEEEECCCCHHHHHHHHHHHHhChHH---HHHHHHhHH
Confidence 99999742 49999999999999999999999999999998899999999999999999999999987 688888888
Q ss_pred HHHHHhcHHHHHHHHHHHHH
Q 001292 584 LHAKNMLALDCVTRYARILE 603 (1106)
Q Consensus 584 e~ake~fsee~v~~Y~eLye 603 (1106)
+.... +..+++|.++|+
T Consensus 342 ~~~~~---~~~~~~~~~~~~ 358 (359)
T cd03823 342 PPRSI---EDQAEEYLKLYR 358 (359)
T ss_pred HhhhH---HHHHHHHHHHhh
Confidence 87755 566668888875
No 52
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.95 E-value=5.9e-26 Score=248.53 Aligned_cols=339 Identities=17% Similarity=0.178 Sum_probs=244.0
Q ss_pred EEEEEeCCCCC--ChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchH--------------------------------HH
Q 001292 224 RIGLILGNMAK--DSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHS--------------------------------LW 269 (1106)
Q Consensus 224 RIalVlg~L~~--gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~--------------------------------i~ 269 (1106)
||++|.+.+.. +|.+..+..++++|++.|++|++++........ ..
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPYKKNGLLKRLL 80 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCcccccccccceEEecCCeEEEEEecCCCCccchHHHHH
Confidence 58888888776 789999999999999999999999864321100 00
Q ss_pred HHH---hHHHHHh--hccCccEEEEccccH--HHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCccccc----chhhhhh
Q 001292 270 EQI---AGQISIL--GQEQYSLIDWSIFDG--IIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANR----LPVYVER 338 (1106)
Q Consensus 270 r~l---g~lvkiI--r~~~pDiIh~~~~~~--i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r----~~~Y~~~ 338 (1106)
... ......+ +..++|+|+++.... .+......+ ..++|+|+++|+...... ......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~----------~~~~~~i~~~h~~~~~~~~~~~~~~~~~- 149 (394)
T cd03794 81 NYLSFALSALLALLKRRRRPDVIIATSPPLLIALAALLLAR----------LKGAPFVLEVRDLWPESAVALGLLKNGS- 149 (394)
T ss_pred hhhHHHHHHHHHHHhcccCCCEEEEcCChHHHHHHHHHHHH----------hcCCCEEEEehhhcchhHHHccCccccc-
Confidence 100 0112222 367899999986222 122222221 257899999998311100 000000
Q ss_pred hHHhHHHH-HHHHhccccEEEecCCChhhhh--cCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEE
Q 001292 339 GFQNLLSY-WKSVFSRVNVIVFPDYTLPMLY--SVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVV 415 (1106)
Q Consensus 339 gleklis~-~~~~l~~AD~VIa~S~~~~~~~--~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL 415 (1106)
...++... ....++.+|.+++.+....... .+.+..++.++|| ++|. ..+.+...... +.......+.++++
T Consensus 150 ~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~~~~~~~~~~~i~~-~~~~---~~~~~~~~~~~-~~~~~~~~~~~~i~ 224 (394)
T cd03794 150 LLYRLLRKLERLIYRRADAIVVISPGMREYLVRRGVPPEKISVIPN-GVDL---ELFKPPPADES-LRKELGLDDKFVVL 224 (394)
T ss_pred hHHHHHHHHHHHHHhcCCEEEEECHHHHHHHHhcCCCcCceEEcCC-CCCH---HHcCCccchhh-hhhccCCCCcEEEE
Confidence 00011111 1345789999999997776664 5677789999998 6886 44443322222 44455667888999
Q ss_pred EEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCCh--hh
Q 001292 416 VVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFN--GD 493 (1106)
Q Consensus 416 ~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~--eD 493 (1106)
++|++.. .|+.+.+++++..+.+ . ++++ |+++|.++.. +.+++++...+++ +|.+.|.. ++
T Consensus 225 ~~G~~~~----~k~~~~l~~~~~~l~~-------~-~~~~-l~i~G~~~~~--~~~~~~~~~~~~~--~v~~~g~~~~~~ 287 (394)
T cd03794 225 YAGNIGR----AQGLDTLLEAAALLKD-------R-PDIR-FLIVGDGPEK--EELKELAKALGLD--NVTFLGRVPKEE 287 (394)
T ss_pred EecCccc----ccCHHHHHHHHHHHhh-------c-CCeE-EEEeCCcccH--HHHHHHHHHcCCC--cEEEeCCCChHH
Confidence 9998877 8999999999987753 1 5777 6889998875 8888877777776 69999954 78
Q ss_pred HHHHHHHcCeEEEccCCC---CCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcc
Q 001292 494 VNGVLLMADIVLYGSSQV---EQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGK 570 (1106)
Q Consensus 494 L~~LyaaADVfV~PS~~E---eEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpe 570 (1106)
+..+|+.||++++|+..+ +.++|++++|||++|+|||+++.++..+++.++.+|++++++|+++++++|.++++|++
T Consensus 288 ~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~ 367 (394)
T cd03794 288 LPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELVEEAGAGLVVPPGDPEALAAAILELLDDPE 367 (394)
T ss_pred HHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhhccCCcceEeCCCCHHHHHHHHHHHHhChH
Confidence 999999999999999876 22458899999999999999999999999988889999999999999999999999998
Q ss_pred cHHHHHHHHHHHHHHHHHhcHH-HHHHHH
Q 001292 571 LSKFARTVASAGRLHAKNMLAL-DCVTRY 598 (1106)
Q Consensus 571 lRk~r~~mGe~Are~ake~fse-e~v~~Y 598 (1106)
. +.++++++++.+.+.|+. ..+++|
T Consensus 368 ~---~~~~~~~~~~~~~~~~s~~~~~~~~ 393 (394)
T cd03794 368 E---RAEMGENGRRYVEEKFSREKLAERL 393 (394)
T ss_pred H---HHHHHHHHHHHHHHhhcHHHHHHhc
Confidence 7 688999999999966654 444454
No 53
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.95 E-value=7.7e-26 Score=262.71 Aligned_cols=340 Identities=13% Similarity=0.046 Sum_probs=229.6
Q ss_pred CCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCC-chHHH---------------------H---H-----
Q 001292 222 PPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGN-SHSLW---------------------E---Q----- 271 (1106)
Q Consensus 222 ~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~-~~~i~---------------------r---~----- 271 (1106)
.+||++++.. . .|....+..+++.|.++||+|+|++..... ..... . .
T Consensus 3 ~~~~~~~~~~-~-~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (415)
T cd03816 3 RKRVCVLVLG-D-IGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEILSNPNITIHPLPPPPQRLNKLPFLLFAPLKVL 80 (415)
T ss_pred ccEEEEEEec-c-cCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHhcCCCEEEEECCCCccccccchHHHHHHHHHH
Confidence 4566665542 2 344444577999999999999999864321 10000 0 0
Q ss_pred ---HhHHHHHhhccCccEEEEccccHH---HHHHHHHHHhhhhcccCCCCCCcEEEEEcCCccccc-chhhhhhhHHhHH
Q 001292 272 ---IAGQISILGQEQYSLIDWSIFDGI---IADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANR-LPVYVERGFQNLL 344 (1106)
Q Consensus 272 ---lg~lvkiIr~~~pDiIh~~~~~~i---~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r-~~~Y~~~glekli 344 (1106)
++....+++..++|+||.+..... +...+..+. .++|+|++.|+...... ........+.++.
T Consensus 81 ~~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~----------~~~~~V~~~h~~~~~~~~~~~~~~~~~~~~~ 150 (415)
T cd03816 81 WQFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLL----------RRTKLIIDWHNYGYTILALKLGENHPLVRLA 150 (415)
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHH----------hCCeEEEEcCCchHHHHhcccCCCCHHHHHH
Confidence 010111345568999998764432 223333322 57899999998521100 0000000011122
Q ss_pred HHH-HHHhccccEEEecCCChhhh--hcCCCCCCEEEeCCCCCCcccccccCcchhHH---HHHH-------------Hc
Q 001292 345 SYW-KSVFSRVNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKY---QLRK-------------EN 405 (1106)
Q Consensus 345 s~~-~~~l~~AD~VIa~S~~~~~~--~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~---~LR~-------------~l 405 (1106)
..+ +..++.+|.|++.|....+. ..+.+++++.|||| +.+ ..|.+..... ..+. ..
T Consensus 151 ~~~e~~~~~~ad~ii~vS~~~~~~l~~~~~~~~ki~vI~N-g~~----~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (415)
T cd03816 151 KWYEKLFGRLADYNLCVTKAMKEDLQQFNNWKIRATVLYD-RPP----EQFRPLPLEEKHELFLKLAKTFLTRELRIGAV 225 (415)
T ss_pred HHHHHHHhhcCCEeeecCHHHHHHHHhhhccCCCeeecCC-CCH----HHceeCcHHHHHHHHHhccccccccccccccc
Confidence 222 13467899999999776654 34577899999998 443 3555532211 1111 11
Q ss_pred CC-CCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCc
Q 001292 406 GF-LKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHS 484 (1106)
Q Consensus 406 GL-~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~r 484 (1106)
++ +++..+++++||+.. .||++.+++|++.+.+.... ....|+++ |+|+|+|+.+ +.++++++++++.+ .
T Consensus 226 ~~~~~~~~vi~~~grl~~----~K~~~~li~A~~~l~~~~~~-~~~~~~i~-l~ivG~G~~~--~~l~~~~~~~~l~~-~ 296 (415)
T cd03816 226 QLSEERPALLVSSTSWTP----DEDFGILLDALVAYEKSAAT-GPKLPKLL-CIITGKGPLK--EKYLERIKELKLKK-V 296 (415)
T ss_pred eecCCCceEEEEeccccC----CCCHHHHHHHHHHHHHhhcc-cccCCCEE-EEEEecCccH--HHHHHHHHHcCCCc-E
Confidence 22 234567888999887 89999999999887643211 12237888 6889999976 99999999999985 5
Q ss_pred EEEcCC--hhhHHHHHHHcCeEEEccC-CCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHH
Q 001292 485 VRHYGF--NGDVNGVLLMADIVLYGSS-QVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRA 561 (1106)
Q Consensus 485 V~flG~--~eDL~~LyaaADVfV~PS~-~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeA 561 (1106)
+.+.|+ .+++..+|++||++++++. ..++++|++++||||||+|||+++.+++.|+|.++.+|++++ |+++|+++
T Consensus 297 ~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~eiv~~~~~G~lv~--d~~~la~~ 374 (415)
T cd03816 297 TIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDELVKHGENGLVFG--DSEELAEQ 374 (415)
T ss_pred EEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHHHhcCCCCEEEEC--CHHHHHHH
Confidence 556674 5899999999999997532 112489999999999999999999999999999999999994 89999999
Q ss_pred HHHHHhC---cccHHHHHHHHHHHHHHHHHhcHH
Q 001292 562 FSLFISN---GKLSKFARTVASAGRLHAKNMLAL 592 (1106)
Q Consensus 562 I~~LLsD---pelRk~r~~mGe~Are~ake~fse 592 (1106)
|..+++| ++. +++|+++|++.++..++.
T Consensus 375 i~~ll~~~~~~~~---~~~m~~~~~~~~~~~~~~ 405 (415)
T cd03816 375 LIDLLSNFPNRGK---LNSLKKGAQEESELRWDE 405 (415)
T ss_pred HHHHHhcCCCHHH---HHHHHHHHHHhhhcCHHH
Confidence 9999999 666 689999999998665543
No 54
>PLN00142 sucrose synthase
Probab=99.95 E-value=1.5e-26 Score=283.35 Aligned_cols=285 Identities=14% Similarity=0.097 Sum_probs=206.5
Q ss_pred CccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccc----------hhhhhhhHHhHHHHHHHHhc
Q 001292 283 QYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRL----------PVYVERGFQNLLSYWKSVFS 352 (1106)
Q Consensus 283 ~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~----------~~Y~~~gleklis~~~~~l~ 352 (1106)
.||+||.|.+++.+++.+.++. .++|++.|.|.....+.. ..|.. ..++... ..+++
T Consensus 408 ~PDlIHaHYwdsg~vA~~La~~----------lgVP~v~T~HsL~k~K~~~~~~~~~~~e~~y~~--~~r~~aE-~~a~~ 474 (815)
T PLN00142 408 KPDLIIGNYSDGNLVASLLAHK----------LGVTQCTIAHALEKTKYPDSDIYWKKFDDKYHF--SCQFTAD-LIAMN 474 (815)
T ss_pred CCCEEEECCccHHHHHHHHHHH----------hCCCEEEEcccchhhhccccCCcccccchhhhh--hhchHHH-HHHHH
Confidence 5999999999999988888764 689999999973222111 01110 0111111 23567
Q ss_pred cccEEEecCCChhh--------h--------------hcCCC--CCCEEEeCCCCCCcccccccCcchhH-H--------
Q 001292 353 RVNVIVFPDYTLPM--------L--------------YSVLD--AGNFFVIPGSPADVWAVEAYSKSHEK-Y-------- 399 (1106)
Q Consensus 353 ~AD~VIa~S~~~~~--------~--------------~~gi~--~~KI~VIpN~GVDl~~~e~F~ps~s~-~-------- 399 (1106)
.||.||+.+..... . ..+++ ..++.+||+ |+|. ..|.|-... .
T Consensus 475 ~Ad~IIasT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVpp-GvD~---~~F~P~~~~~~rl~~l~n~ 550 (815)
T PLN00142 475 HADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSP-GADM---SIYFPYTEKQKRLTSLHPS 550 (815)
T ss_pred hhhHHHhCcHHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECC-CCCh---hhcCCCChHHhhHHhhccc
Confidence 88888877743321 0 11222 448889996 8998 556542211 1
Q ss_pred ---------HHHHHcCC--CCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCC----
Q 001292 400 ---------QLRKENGF--LKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNST---- 464 (1106)
Q Consensus 400 ---------~LR~~lGL--~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~Gp---- 464 (1106)
..++.+|+ .+++++|+++||+.+ .||++.+++|+.++... .++++ |+|+|.+.
T Consensus 551 I~~~l~~~~~~~e~lg~l~~~~kpvIl~VGRL~~----~KGid~LIeA~a~l~~l-------~~~~~-LVIVGgg~d~~~ 618 (815)
T PLN00142 551 IEELLYSPEQNDEHIGYLKDRKKPIIFSMARLDR----VKNLTGLVEWYGKNKRL-------RELVN-LVVVGGFIDPSK 618 (815)
T ss_pred chhhcCChHHHHHHhCCccCCCCcEEEEEecCcc----cCCHHHHHHHHHHHHHh-------CCCcE-EEEEECCccccc
Confidence 12345665 456789999999998 99999999999766421 25677 56777652
Q ss_pred --Cc----cHHHHHHHHHHcCCCCCcEEEcCCh------hhHHHHHH-HcCeEEEccCCCCCCCcHHHHHHHHhCCCEEe
Q 001292 465 --DG----YNDALQEVASRLGLLEHSVRHYGFN------GDVNGVLL-MADIVLYGSSQVEQGFPSLIVRAMTFGIPVIT 531 (1106)
Q Consensus 465 --er----Y~eeLkeLaeklGL~d~rV~flG~~------eDL~~Lya-aADVfV~PS~~EeEGFGlvLLEAMA~G~PVIA 531 (1106)
.. +...+.++++++++.+ +|.|+|.. +++..+++ ++|+||+||.+| +||++++||||||+|||+
T Consensus 619 s~d~ee~~el~~L~~La~~lgL~~-~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~E--gFGLvvLEAMA~GlPVVA 695 (815)
T PLN00142 619 SKDREEIAEIKKMHSLIEKYNLKG-QFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYE--AFGLTVVEAMTCGLPTFA 695 (815)
T ss_pred cccHHHHHHHHHHHHHHHHcCCCC-cEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCccc--CCCHHHHHHHHcCCCEEE
Confidence 11 1235778899999997 99999843 34556666 479999999987 999999999999999999
Q ss_pred cCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHHHHHhc-HHHHHHHHHHHH
Q 001292 532 PDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFI----SNGKLSKFARTVASAGRLHAKNML-ALDCVTRYARIL 602 (1106)
Q Consensus 532 SD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LL----sDpelRk~r~~mGe~Are~ake~f-see~v~~Y~eLy 602 (1106)
++.||+.|+|.++.+|+++++.|+++++++|..++ +|+++ +.+|+++|++.+.+.| |+..++++.++.
T Consensus 696 TdvGG~~EIV~dG~tG~LV~P~D~eaLA~aI~~lLekLl~Dp~l---r~~mg~~Ar~rv~e~FSWe~~A~rll~L~ 768 (815)
T PLN00142 696 TCQGGPAEIIVDGVSGFHIDPYHGDEAANKIADFFEKCKEDPSY---WNKISDAGLQRIYECYTWKIYAERLLTLG 768 (815)
T ss_pred cCCCCHHHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999997654 68887 6899999999986655 455566887765
No 55
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.95 E-value=1.9e-25 Score=262.05 Aligned_cols=333 Identities=11% Similarity=0.091 Sum_probs=234.0
Q ss_pred CCCEEEEEeCCCCC--ChhHHHHHHHHHHHHHCC-CEEEEEEcCCCCc------------------h---------HH--
Q 001292 221 RPPRIGLILGNMAK--DSRSLLLITVVKNLQKLG-YVFKIYAVRSGNS------------------H---------SL-- 268 (1106)
Q Consensus 221 r~~RIalVlg~L~~--gGesl~vv~LakaLqe~G-yeVtV~t~~dg~~------------------~---------~i-- 268 (1106)
.++|||+|+....+ +|.......++..|+++| |+|+|+.+..... + .+
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~~v~r 82 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEERISF 82 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccccccccccccCchhhhhhhhhhccCeEEE
Confidence 46899999999987 899889999999999999 7999997732100 0 00
Q ss_pred --------HHH-----------HhHHHHHhhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCccc
Q 001292 269 --------WEQ-----------IAGQISILGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLA 329 (1106)
Q Consensus 269 --------~r~-----------lg~lvkiIr~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls 329 (1106)
+.. .+.+.+.++..++|+||.+.....-......+... +..++|.++|....
T Consensus 83 ~~s~~~p~yp~r~~~~~r~~~~~~~i~~~l~~~~pDVIHv~tP~~LG~~~~g~~~~~--------k~~~vV~tyHT~y~- 153 (462)
T PLN02846 83 LPKFSIKFYPGKFSTDKRSILPVGDISETIPDEEADIAVLEEPEHLTWYHHGKRWKT--------KFRLVIGIVHTNYL- 153 (462)
T ss_pred ecccccccCcccccccccccCChHHHHHHHHhcCCCEEEEcCchhhhhHHHHHHHHh--------cCCcEEEEECCChH-
Confidence 001 12255677778999999987665444211222221 22458888999431
Q ss_pred ccchhhh----hhhHHhHHHHHHHHhccccEEEecCCChhhhhcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHc
Q 001292 330 NRLPVYV----ERGFQNLLSYWKSVFSRVNVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKEN 405 (1106)
Q Consensus 330 ~r~~~Y~----~~gleklis~~~~~l~~AD~VIa~S~~~~~~~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~l 405 (1106)
..+.+|. ...+.+.+..|...+ .+|.+++++....... . .+.+.++ |||. +.|.+.... .++.+
T Consensus 154 ~Y~~~~~~g~~~~~l~~~~~~~~~r~-~~d~vi~pS~~~~~l~----~-~~i~~v~-GVd~---~~f~~~~~~--~~~~~ 221 (462)
T PLN02846 154 EYVKREKNGRVKAFLLKYINSWVVDI-YCHKVIRLSAATQDYP----R-SIICNVH-GVNP---KFLEIGKLK--LEQQK 221 (462)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHH-hcCEEEccCHHHHHHh----h-CEEecCc-eech---hhcCCCccc--Hhhhc
Confidence 1111221 111122233332222 4899999996443321 1 2334344 8998 666654322 33333
Q ss_pred CCCCC--cEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCC
Q 001292 406 GFLKD--EIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEH 483 (1106)
Q Consensus 406 GL~~d--~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~ 483 (1106)
+ .++ .++++++||+.. +||++.+++|++.+.+.. |+++ |+|+|+||++ +++++++.++++..
T Consensus 222 ~-~~~~~~~~~l~vGRL~~----eK~~~~Li~a~~~l~~~~-------~~~~-l~ivGdGp~~--~~L~~~a~~l~l~~- 285 (462)
T PLN02846 222 N-GEQAFTKGAYYIGKMVW----SKGYKELLKLLHKHQKEL-------SGLE-VDLYGSGEDS--DEVKAAAEKLELDV- 285 (462)
T ss_pred C-CCCCcceEEEEEecCcc----cCCHHHHHHHHHHHHhhC-------CCeE-EEEECCCccH--HHHHHHHHhcCCcE-
Confidence 3 334 347899999998 999999999998776422 6787 7899999987 99999999999874
Q ss_pred cEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHH
Q 001292 484 SVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFS 563 (1106)
Q Consensus 484 rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~ 563 (1106)
+| |.|. .+..++|+.+|+||+||..| +||++++||||||+|||+++.++ .+++.++.+|+++ .|+++++++|.
T Consensus 286 ~v-f~G~-~~~~~~~~~~DvFv~pS~~E--t~g~v~lEAmA~G~PVVa~~~~~-~~~v~~~~ng~~~--~~~~~~a~ai~ 358 (462)
T PLN02846 286 RV-YPGR-DHADPLFHDYKVFLNPSTTD--VVCTTTAEALAMGKIVVCANHPS-NEFFKQFPNCRTY--DDGKGFVRATL 358 (462)
T ss_pred EE-ECCC-CCHHHHHHhCCEEEECCCcc--cchHHHHHHHHcCCcEEEecCCC-cceeecCCceEec--CCHHHHHHHHH
Confidence 44 8885 35568999999999999987 99999999999999999999998 5999999999888 58999999999
Q ss_pred HHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 001292 564 LFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILENV 605 (1106)
Q Consensus 564 ~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLyesl 605 (1106)
.+++++.. .++.+++ +.+.|+.+++++.++|+--
T Consensus 359 ~~l~~~~~-----~~~~~a~---~~~SWe~~~~~l~~~~~~~ 392 (462)
T PLN02846 359 KALAEEPA-----PLTDAQR---HELSWEAATERFLRVADLD 392 (462)
T ss_pred HHHccCch-----hHHHHHH---HhCCHHHHHHHHHHHhccC
Confidence 99986532 1222332 4778888888999999854
No 56
>PLN02949 transferase, transferring glycosyl groups
Probab=99.95 E-value=9.1e-26 Score=266.18 Aligned_cols=231 Identities=15% Similarity=0.029 Sum_probs=179.0
Q ss_pred HhccccEEEecCCChhhh-hc-CCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCcccccc
Q 001292 350 VFSRVNVIVFPDYTLPML-YS-VLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELS 427 (1106)
Q Consensus 350 ~l~~AD~VIa~S~~~~~~-~~-gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~ 427 (1106)
+.+.+|.|++.|...... .. ...+.++.++++ |+|. +.+.... ....++..+++++||+.+ .
T Consensus 217 ~~~~ad~ii~nS~~t~~~l~~~~~~~~~i~vvyp-~vd~---~~~~~~~--------~~~~~~~~~il~vGR~~~----~ 280 (463)
T PLN02949 217 VGRCAHLAMVNSSWTKSHIEALWRIPERIKRVYP-PCDT---SGLQALP--------LERSEDPPYIISVAQFRP----E 280 (463)
T ss_pred HcCCCCEEEECCHHHHHHHHHHcCCCCCeEEEcC-CCCH---HHcccCC--------ccccCCCCEEEEEEeeec----c
Confidence 457899999998665544 11 112347888887 6776 3332111 001234568999999988 8
Q ss_pred CCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCC----ccHHHHHHHHHHcCCCCCcEEEcCCh--hhHHHHHHHc
Q 001292 428 WDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTD----GYNDALQEVASRLGLLEHSVRHYGFN--GDVNGVLLMA 501 (1106)
Q Consensus 428 Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~Gpe----rY~eeLkeLaeklGL~d~rV~flG~~--eDL~~LyaaA 501 (1106)
||++.+|+|+..+.++. ....|+++ |+|+|+++. .|.++++++++++|+.+ +|.|+|.. +++..+|+.|
T Consensus 281 Kg~~llI~A~~~l~~~~---~~~~~~~~-LvIvG~~~~~~~~~~~~eL~~la~~l~L~~-~V~f~g~v~~~el~~ll~~a 355 (463)
T PLN02949 281 KAHALQLEAFALALEKL---DADVPRPK-LQFVGSCRNKEDEERLQKLKDRAKELGLDG-DVEFHKNVSYRDLVRLLGGA 355 (463)
T ss_pred CCHHHHHHHHHHHHHhc---cccCCCcE-EEEEeCCCCcccHHHHHHHHHHHHHcCCCC-cEEEeCCCCHHHHHHHHHhC
Confidence 99999999998876432 12347788 688887642 24578999999999998 99999955 7899999999
Q ss_pred CeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCch-hhhcc---CCeEEEEcCCCHHHHHHHHHHHHhC-cccHHHHH
Q 001292 502 DIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIK-EYVAE---GAQVIFFQKDNPEGLSRAFSLFISN-GKLSKFAR 576 (1106)
Q Consensus 502 DVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~-EiV~D---g~nG~LV~~~D~eeLAeAI~~LLsD-pelRk~r~ 576 (1106)
|++++||..| +||++++||||+|+|||++|.||.. +++.+ +.+|++++ |+++++++|.+++++ ++. ++
T Consensus 356 ~~~v~~s~~E--~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~~--~~~~la~ai~~ll~~~~~~---r~ 428 (463)
T PLN02949 356 VAGLHSMIDE--HFGISVVEYMAAGAVPIAHNSAGPKMDIVLDEDGQQTGFLAT--TVEEYADAILEVLRMRETE---RL 428 (463)
T ss_pred cEEEeCCccC--CCChHHHHHHHcCCcEEEeCCCCCcceeeecCCCCcccccCC--CHHHHHHHHHHHHhCCHHH---HH
Confidence 9999999876 9999999999999999999999975 66655 56898874 999999999999985 444 67
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcC
Q 001292 577 TVASAGRLHAKNMLALDCVTRYARILENVLNF 608 (1106)
Q Consensus 577 ~mGe~Are~ake~fsee~v~~Y~eLyeslLk~ 608 (1106)
+|+++|++.++++.++...+++.+.++++++.
T Consensus 429 ~m~~~ar~~~~~FS~e~~~~~~~~~i~~l~~~ 460 (463)
T PLN02949 429 EIAAAARKRANRFSEQRFNEDFKDAIRPILNS 460 (463)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhh
Confidence 89999999997766666677999999988763
No 57
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.94 E-value=1.1e-24 Score=253.78 Aligned_cols=341 Identities=16% Similarity=0.109 Sum_probs=221.3
Q ss_pred EEEEEeCCCCCC-hhHHHHHHHHHHHHHC--CCEEEEEEcCCCCch-HHHHHHhHHHHHhhccCc---cEEEE-------
Q 001292 224 RIGLILGNMAKD-SRSLLLITVVKNLQKL--GYVFKIYAVRSGNSH-SLWEQIAGQISILGQEQY---SLIDW------- 289 (1106)
Q Consensus 224 RIalVlg~L~~g-Gesl~vv~LakaLqe~--GyeVtV~t~~dg~~~-~i~r~lg~lvkiIr~~~p---DiIh~------- 289 (1106)
.|+|++++++.| |.+..+...+.+|++. +++|+|+|....... .+....+. .+..... .++..
T Consensus 2 ~~~f~hp~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~---~f~~~~~~~~~~~~~~~~~~~~ 78 (419)
T cd03806 2 TVGFFHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVES---RFNIELDRPRIVFFLLKYRKLV 78 (419)
T ss_pred eEEEECCCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHH---hcCeecCCCceEEEEecceeee
Confidence 479999999997 9999999999999999 899999987543322 22221111 1111000 00000
Q ss_pred --c------ccc---HHHHHHHHH--HHhhhhcccCC-----------CCCCcEEEEEcCCccc-ccc------------
Q 001292 290 --S------IFD---GIIADSLEA--KEAISSLMQEP-----------FHSIPLVWIIQEDSLA-NRL------------ 332 (1106)
Q Consensus 290 --~------~~~---~i~v~~La~--k~~idII~te~-----------~~gIPVI~tIHna~Ls-~r~------------ 332 (1106)
. ... ..++..+.. +...|++..+. ..++|+|..+|--..+ ..+
T Consensus 79 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~pDv~i~~~g~~~~~~~~~~~~~~~~i~y~h~P~~~~d~l~~~~~~~~~~~~ 158 (419)
T cd03806 79 EASTYPRFTLLGQALGSMILGLEALLKLVPDIFIDTMGYPFTYPLVRLLGGCPVGAYVHYPTISTDMLQKVRSREASYNN 158 (419)
T ss_pred ccccCCceeeHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHhcCCeEEEEecCCcchHHHHHHHhhccccccC
Confidence 0 000 000111111 11123333222 3477999999942100 000
Q ss_pred ----hhhhhhhHHhHH------HHHHHHhccccEEEecCCChhhhh-cCC-CCCCEEEeCCCCCCcccccccCcchhHHH
Q 001292 333 ----PVYVERGFQNLL------SYWKSVFSRVNVIVFPDYTLPMLY-SVL-DAGNFFVIPGSPADVWAVEAYSKSHEKYQ 400 (1106)
Q Consensus 333 ----~~Y~~~glekli------s~~~~~l~~AD~VIa~S~~~~~~~-~gi-~~~KI~VIpN~GVDl~~~e~F~ps~s~~~ 400 (1106)
.........+.+ ..+...++.+|.++++|....... ... ...++.+|++ |+|+ +.|.+...
T Consensus 159 ~~~~~~~~~~~~~k~~y~~~~~~~~~~~~~~aD~ii~~S~~~~~~~~~~~~~~~~~~vi~~-gvd~---~~~~~~~~--- 231 (419)
T cd03806 159 SATIARSPVLSKAKLLYYRLFAFLYGLAGSFADVVMVNSTWTRNHIRSLWKRNTKPSIVYP-PCDV---EELLKLPL--- 231 (419)
T ss_pred ccchhccchHHHHHHHHHHHHHHHHHHHhhcCCEEEECCHHHHHHHHHHhCcCCCcEEEcC-CCCH---HHhccccc---
Confidence 000000011111 122345789999999986655442 111 2247889997 7887 44433211
Q ss_pred HHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCC----ccHHHHHHHHH
Q 001292 401 LRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTD----GYNDALQEVAS 476 (1106)
Q Consensus 401 LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~Gpe----rY~eeLkeLae 476 (1106)
....+.++|+++||+.+ .||++.+++|+..+.++..... .++++ |+|+|.+.. .|.++++++++
T Consensus 232 -----~~~~~~~~il~vgr~~~----~K~~~~li~A~~~l~~~~~~~~--~~~~~-lvivG~~~~~~~~~~~~~L~~~~~ 299 (419)
T cd03806 232 -----DEKTRENQILSIAQFRP----EKNHPLQLRAFAKLLKRLPEEI--KEKIK-LVLIGSCRNEDDEKRVEDLKLLAK 299 (419)
T ss_pred -----ccccCCcEEEEEEeecC----CCCHHHHHHHHHHHHHhCcccc--cCceE-EEEEcCCCCcccHHHHHHHHHHHH
Confidence 11345679999999988 8999999999998875432111 24687 688887642 24678899999
Q ss_pred HcCCCCCcEEEcCC--hhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCc-hhhhc---cCCeEEEE
Q 001292 477 RLGLLEHSVRHYGF--NGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPII-KEYVA---EGAQVIFF 550 (1106)
Q Consensus 477 klGL~d~rV~flG~--~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI-~EiV~---Dg~nG~LV 550 (1106)
++++.+ +|+|+|. .+++..+|+.||++++||..| +||++++||||||+|||+++.+|. .+++. ++.+|+++
T Consensus 300 ~l~l~~-~V~f~g~v~~~~l~~~l~~adv~v~~s~~E--~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~ 376 (419)
T cd03806 300 ELGLED-KVEFVVNAPFEELLEELSTASIGLHTMWNE--HFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGGPTGFLA 376 (419)
T ss_pred HhCCCC-eEEEecCCCHHHHHHHHHhCeEEEECCccC--CcccHHHHHHHcCCcEEEEcCCCCchheeeccCCCCceEEe
Confidence 999987 9999995 578999999999999999886 999999999999999999999875 57777 78999997
Q ss_pred cCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHH
Q 001292 551 QKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDC 594 (1106)
Q Consensus 551 ~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fsee~ 594 (1106)
+ |+++++++|.+++++++.. ++.++.++++ +.+.|+.+.
T Consensus 377 ~--d~~~la~ai~~ll~~~~~~--~~~~~~~~~~-~~~~fs~~~ 415 (419)
T cd03806 377 S--TAEEYAEAIEKILSLSEEE--RLRIRRAARS-SVKRFSDEE 415 (419)
T ss_pred C--CHHHHHHHHHHHHhCCHHH--HHHHHHHHHH-HHHhhCHHH
Confidence 4 9999999999999987642 3445545554 556666544
No 58
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.94 E-value=5.2e-25 Score=262.02 Aligned_cols=283 Identities=11% Similarity=0.100 Sum_probs=206.9
Q ss_pred HHHHhhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccc
Q 001292 275 QISILGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRV 354 (1106)
Q Consensus 275 lvkiIr~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~A 354 (1106)
..+.+...++|++++..........+.. ...+|++.++|+.-+...........+...........+.+
T Consensus 203 f~~~L~~~~~di~i~dr~~~~~~~~~~~-----------~~~~~~v~~lH~~h~~~~~~~~~~~~~~~~y~~~~~~~~~~ 271 (500)
T TIGR02918 203 FLKQLNLTKKDIIILDRSTGIGQAVLEN-----------KGPAKLGVVVHAEHFSESATNETYILWNNYYEYQFSNADYI 271 (500)
T ss_pred HHHHHhCCCCCEEEEcCCcccchHHHhc-----------CCCceEEEEEChhhhcCccCcchhHHHHHHHHHHHhchhhC
Confidence 3344445678888886544322222221 25689999999843222111000000011111112235678
Q ss_pred cEEEecCCChhhh----h--cCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccC
Q 001292 355 NVIVFPDYTLPML----Y--SVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSW 428 (1106)
Q Consensus 355 D~VIa~S~~~~~~----~--~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~K 428 (1106)
|.+|+++...... . .+.+..++.+||+ |++. ..+.+. ...+..+|+++||+.+ .|
T Consensus 272 D~iI~~S~~~~~~l~~~~~~~~~~~~ki~viP~-g~~~---~~~~~~-----------~~r~~~~il~vGrl~~----~K 332 (500)
T TIGR02918 272 DFFITATDIQNQILKNQFKKYYNIEPRIYTIPV-GSLD---ELQYPE-----------QERKPFSIITASRLAK----EK 332 (500)
T ss_pred CEEEECCHHHHHHHHHHhhhhcCCCCcEEEEcC-CCcc---cccCcc-----------cccCCeEEEEEecccc----cc
Confidence 9999988653332 1 1233568999998 5653 222111 0124568999999988 89
Q ss_pred CHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEcc
Q 001292 429 DYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGS 508 (1106)
Q Consensus 429 g~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS 508 (1106)
|++.+++|+..+.++. |+++ |+|+|.|++. +.++++++++++.+ +|.|+|.. ++.++|+.||++|+||
T Consensus 333 g~~~li~A~~~l~~~~-------p~~~-l~i~G~G~~~--~~l~~~i~~~~l~~-~V~f~G~~-~~~~~~~~adv~v~pS 400 (500)
T TIGR02918 333 HIDWLVKAVVKAKKSV-------PELT-FDIYGEGGEK--QKLQKIINENQAQD-YIHLKGHR-NLSEVYKDYELYLSAS 400 (500)
T ss_pred CHHHHHHHHHHHHhhC-------CCeE-EEEEECchhH--HHHHHHHHHcCCCC-eEEEcCCC-CHHHHHHhCCEEEEcC
Confidence 9999999998886433 8888 6889999976 89999999999987 99999975 8999999999999999
Q ss_pred CCCCCCCcHHHHHHHHhCCCEEecCCC-CchhhhccCCeEEEEcCC----C----HHHHHHHHHHHHhCcccHHHHHHHH
Q 001292 509 SQVEQGFPSLIVRAMTFGIPVITPDFP-IIKEYVAEGAQVIFFQKD----N----PEGLSRAFSLFISNGKLSKFARTVA 579 (1106)
Q Consensus 509 ~~EeEGFGlvLLEAMA~G~PVIASD~g-GI~EiV~Dg~nG~LV~~~----D----~eeLAeAI~~LLsDpelRk~r~~mG 579 (1106)
..| |||++++||||||+|||++|++ |.+|+|.++.+|++++++ | +++||++|..+++ ++. +.+|+
T Consensus 401 ~~E--gfgl~~lEAma~G~PVI~~dv~~G~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~-~~~---~~~~~ 474 (500)
T TIGR02918 401 TSE--GFGLTLMEAVGSGLGMIGFDVNYGNPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFN-SND---IDAFH 474 (500)
T ss_pred ccc--cccHHHHHHHHhCCCEEEecCCCCCHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHhC-hHH---HHHHH
Confidence 986 9999999999999999999986 899999999999999843 3 8899999999995 443 58899
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHH
Q 001292 580 SAGRLHAKNMLALDCVTRYARILENV 605 (1106)
Q Consensus 580 e~Are~ake~fsee~v~~Y~eLyesl 605 (1106)
++|++.++++.++.++++|.++++++
T Consensus 475 ~~a~~~a~~fs~~~v~~~w~~ll~~~ 500 (500)
T TIGR02918 475 EYSYQIAEGFLTANIIEKWKKLVREV 500 (500)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 99999998888888888999998763
No 59
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.94 E-value=1.4e-24 Score=249.50 Aligned_cols=224 Identities=16% Similarity=0.212 Sum_probs=168.5
Q ss_pred HHhccccEEEecCCChhhhhc---CCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCcccc
Q 001292 349 SVFSRVNVIVFPDYTLPMLYS---VLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNE 425 (1106)
Q Consensus 349 ~~l~~AD~VIa~S~~~~~~~~---gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~k 425 (1106)
..++.+|.+++.|........ .....++.+||| |+|. +.|.+.... ...+.++.++|+++|++..
T Consensus 168 ~~~~~ad~vi~~S~~~~~~l~~~~~~~~~~v~vipn-gvd~---~~f~~~~~~-----~~~~~~~~~~ilf~G~l~~--- 235 (397)
T TIGR03087 168 AIAARFDAATFVSRAEAELFRRLAPEAAGRITAFPN-GVDA---DFFSPDRDY-----PNPYPPGKRVLVFTGAMDY--- 235 (397)
T ss_pred HHHhhCCeEEEcCHHHHHHHHHhCCCCCCCeEEeec-ccch---hhcCCCccc-----cCCCCCCCcEEEEEEecCC---
Confidence 467899999999977665522 334568999998 8998 556543211 0122345679999999887
Q ss_pred ccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEE
Q 001292 426 LSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVL 505 (1106)
Q Consensus 426 g~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV 505 (1106)
.||.+.++.++..+.... ....|+++ |+|+|.++. ..+++ ++..+ +|+|+|+.+++..+|+.||++|
T Consensus 236 -~k~~~~l~~~~~~~~~~l---~~~~p~~~-l~ivG~g~~---~~~~~----l~~~~-~V~~~G~v~~~~~~~~~adv~v 302 (397)
T TIGR03087 236 -WPNIDAVVWFAERVFPAV---RARRPAAE-FYIVGAKPS---PAVRA----LAALP-GVTVTGSVADVRPYLAHAAVAV 302 (397)
T ss_pred -ccCHHHHHHHHHHHHHHH---HHHCCCcE-EEEECCCCh---HHHHH----hccCC-CeEEeeecCCHHHHHHhCCEEE
Confidence 889998886554443322 12237888 688999885 33433 34445 7999999999999999999999
Q ss_pred EccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Q 001292 506 YGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLH 585 (1106)
Q Consensus 506 ~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ 585 (1106)
+||... ||+|++++||||||+|||+++.++ ..+...+.+|++++ +|+++++++|.++++|+++ +++|+++|++.
T Consensus 303 ~Ps~~~-eG~~~~~lEAma~G~PVV~t~~~~-~~i~~~~~~g~lv~-~~~~~la~ai~~ll~~~~~---~~~~~~~ar~~ 376 (397)
T TIGR03087 303 APLRIA-RGIQNKVLEAMAMAKPVVASPEAA-EGIDALPGAELLVA-ADPADFAAAILALLANPAE---REELGQAARRR 376 (397)
T ss_pred eccccc-CCcccHHHHHHHcCCCEEecCccc-ccccccCCcceEeC-CCHHHHHHHHHHHHcCHHH---HHHHHHHHHHH
Confidence 999753 599999999999999999999753 22333345788887 8999999999999999987 68899999999
Q ss_pred HHHhc-HHHHHHHHHHHHH
Q 001292 586 AKNML-ALDCVTRYARILE 603 (1106)
Q Consensus 586 ake~f-see~v~~Y~eLye 603 (1106)
+.++| |+..++++.++|+
T Consensus 377 v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 377 VLQHYHWPRNLARLDALLE 395 (397)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 87655 5666668888875
No 60
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.92 E-value=1.7e-23 Score=242.56 Aligned_cols=243 Identities=17% Similarity=0.108 Sum_probs=187.5
Q ss_pred cEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecCCChhhh---hcCCCCCCEEEeCCCCCCcccccccCc
Q 001292 318 PLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPML---YSVLDAGNFFVIPGSPADVWAVEAYSK 394 (1106)
Q Consensus 318 PVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~~~~~~---~~gi~~~KI~VIpN~GVDl~~~e~F~p 394 (1106)
++|.+.|+..+...... ..........++.+|.+++.|...... ..+...+++.++++ |++. ..+.+
T Consensus 154 ~~i~~~Hg~d~~~~~~~------~~~~~~~~~~~~~~d~ii~~S~~~~~~l~~~~~~~~~ki~vi~~-gv~~---~~~~~ 223 (407)
T cd04946 154 RVISRAHGYDLYEDRYP------SGYIPLRRYLLSSLDAVFPCSEQGRNYLQKRYPAYKEKIKVSYL-GVSD---PGIIS 223 (407)
T ss_pred eEEEEeccchhhhhhcc------ccchHHHHHHHhcCCEEEECCHHHHHHHHHHCCCccccEEEEEC-Cccc---ccccC
Confidence 59999999654321111 011111223478999999999776554 22445678889987 7876 33322
Q ss_pred chhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHH
Q 001292 395 SHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEV 474 (1106)
Q Consensus 395 s~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeL 474 (1106)
. ...++.+.|+++|++.+ .||++.+++|+..+.+.. ...+++ ++++|.|++. +.++++
T Consensus 224 ~----------~~~~~~~~il~~Grl~~----~Kg~~~li~a~~~l~~~~-----p~~~l~-~~iiG~g~~~--~~l~~~ 281 (407)
T cd04946 224 K----------PSKDDTLRIVSCSYLVP----VKRVDLIIKALAALAKAR-----PSIKIK-WTHIGGGPLE--DTLKEL 281 (407)
T ss_pred C----------CCCCCCEEEEEeecccc----ccCHHHHHHHHHHHHHhC-----CCceEE-EEEEeCchHH--HHHHHH
Confidence 1 12346789999999988 899999999998886432 012455 5778998875 889999
Q ss_pred HHHcCCCCCcEEEcCCh--hhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEE
Q 001292 475 ASRLGLLEHSVRHYGFN--GDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFF 550 (1106)
Q Consensus 475 aeklGL~d~rV~flG~~--eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV 550 (1106)
+++++..+ +|.|+|+. +++..+|+. +|++++||..| |+|++++||||+|+|||++++||++|++.++.+|+++
T Consensus 282 ~~~~~~~~-~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~E--g~p~~llEAma~G~PVIas~vgg~~e~i~~~~~G~l~ 358 (407)
T cd04946 282 AESKPENI-SVNFTGELSNSEVYKLYKENPVDVFVNLSESE--GLPVSIMEAMSFGIPVIATNVGGTPEIVDNGGNGLLL 358 (407)
T ss_pred HHhcCCCc-eEEEecCCChHHHHHHHhhcCCCEEEeCCccc--cccHHHHHHHHcCCCEEeCCCCCcHHHhcCCCcEEEe
Confidence 98888876 89999965 578899976 78999999987 9999999999999999999999999999999999999
Q ss_pred cC-CCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHH-HH
Q 001292 551 QK-DNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVT-RY 598 (1106)
Q Consensus 551 ~~-~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~-~Y 598 (1106)
++ +|+++++++|.++++|+++ +.+|+++|++.++++|+.+... +|
T Consensus 359 ~~~~~~~~la~~I~~ll~~~~~---~~~m~~~ar~~~~~~f~~~~~~~~~ 405 (407)
T cd04946 359 SKDPTPNELVSSLSKFIDNEEE---YQTMREKAREKWEENFNASKNYREF 405 (407)
T ss_pred CCCCCHHHHHHHHHHHHhCHHH---HHHHHHHHHHHHHHHcCHHHhHHHh
Confidence 76 4899999999999999987 6899999999999888765543 44
No 61
>PHA01630 putative group 1 glycosyl transferase
Probab=99.92 E-value=5.6e-23 Score=233.09 Aligned_cols=295 Identities=16% Similarity=0.151 Sum_probs=198.6
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEcCCCCchHHHHHHhHHHHHhhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCC
Q 001292 238 SLLLITVVKNLQKLGYVFKIYAVRSGNSHSLWEQIAGQISILGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSI 317 (1106)
Q Consensus 238 sl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r~lg~lvkiIr~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gI 317 (1106)
..+..-+.+.|+..|.+|+++....-. ...+.. .+..+- +.+.+.....-+.. +..++
T Consensus 13 ~~~~~~~~~~l~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~---~~~~~~~~~~~~~~-------~~~~~ 70 (331)
T PHA01630 13 VRQKKLLEEHLKMLGHKVTVFEKPTLT-----------KYQLPP-GYPIYI---YYTIFNSMLFWKGI-------PHVGK 70 (331)
T ss_pred HHHHHHHHHHHHHhCCeeEEEeccchh-----------hhhcCC-CCceee---ehhhhhHHHHHhhc-------cccCC
Confidence 344455678899999999998654311 112222 222111 22222222222211 13678
Q ss_pred cEEEEEcCCcccccchhhhhhhHHhHHHHHHHH-hccccEEEecCCChhhh--hcCCC-CCCEEEeCCCCCCcccccccC
Q 001292 318 PLVWIIQEDSLANRLPVYVERGFQNLLSYWKSV-FSRVNVIVFPDYTLPML--YSVLD-AGNFFVIPGSPADVWAVEAYS 393 (1106)
Q Consensus 318 PVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~-l~~AD~VIa~S~~~~~~--~~gi~-~~KI~VIpN~GVDl~~~e~F~ 393 (1106)
|+++++|... ++.. .+. ... .+.+|.++++|...... ..+++ ++++.+||| |+|. +.|.
T Consensus 71 ~~v~e~~~~~---~l~~--------~~~--~~~~~~~ad~ii~~S~~~~~~l~~~g~~~~~~i~vIpN-GVd~---~~f~ 133 (331)
T PHA01630 71 NIVFEVADTD---AISH--------TAL--YFFRNQPVDEIVVPSQWSKNAFYTSGLKIPQPIYVIPH-NLNP---RMFE 133 (331)
T ss_pred ceEEEEEeec---hhhH--------HHH--HHHhhccCCEEEECCHHHHHHHHHcCCCCCCCEEEECC-CCCH---HHcC
Confidence 9999999831 1111 111 122 46899999999776654 33444 468999998 8997 5564
Q ss_pred cchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHH
Q 001292 394 KSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQE 473 (1106)
Q Consensus 394 ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLke 473 (1106)
+.... ..+.++++++|++.+ .||++.+++|++.+.++ +++++ ++++|.++.. ..+
T Consensus 134 ~~~~~---------~~~~~vl~~~g~~~~----~Kg~d~Li~A~~~l~~~-------~~~~~-llivG~~~~~--~~l-- 188 (331)
T PHA01630 134 YKPKE---------KPHPCVLAILPHSWD----RKGGDIVVKIFHELQNE-------GYDFY-FLIKSSNMLD--PRL-- 188 (331)
T ss_pred CCccc---------cCCCEEEEEeccccc----cCCHHHHHHHHHHHHhh-------CCCEE-EEEEeCcccc--hhh--
Confidence 43110 124567777777666 89999999999887642 36887 5778866543 211
Q ss_pred HHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcC-
Q 001292 474 VASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQK- 552 (1106)
Q Consensus 474 LaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~- 552 (1106)
.++. .+....+.+++..+|+.||++++||..| +||++++||||||+|||+++.||++|++.++.+|++++.
T Consensus 189 ----~~~~--~~~~~v~~~~l~~~y~~aDv~v~pS~~E--~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~ 260 (331)
T PHA01630 189 ----FGLN--GVKTPLPDDDIYSLFAGCDILFYPVRGG--AFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSG 260 (331)
T ss_pred ----cccc--ceeccCCHHHHHHHHHhCCEEEECCccc--cCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeec
Confidence 1333 2222235589999999999999999986 999999999999999999999999999999989888753
Q ss_pred ------------------CCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 001292 553 ------------------DNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILEN 604 (1106)
Q Consensus 553 ------------------~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLyes 604 (1106)
.|.+++++++.+++.|++..+.++.++.+++...+++.|+..+++|.++|++
T Consensus 261 ~~~~~~~~~~~~~G~~v~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 261 RKPKLWYTNPIHVGYFLDPDIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYNAIAKMWEKILEK 330 (331)
T ss_pred ccccccccCCcccccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 3778899999999988521112455666677777777778888899999975
No 62
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.92 E-value=1.3e-23 Score=237.32 Aligned_cols=272 Identities=14% Similarity=0.147 Sum_probs=199.7
Q ss_pred ccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEec
Q 001292 281 QEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFP 360 (1106)
Q Consensus 281 ~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~ 360 (1106)
...+|+++++.........+.. ....++|.++|+.......... ...+..+.......+..+|.+++.
T Consensus 97 ~~~~diii~~~~~~~~~~~~~~-----------~~~~~~i~~~h~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~ii~~ 164 (372)
T cd04949 97 DTKPDVFILDRPTLDGQALLNM-----------KKAAKVVVVLHSNHVSDNNDPV-HSLINNFYEYVFENLDKVDGVIVA 164 (372)
T ss_pred CCCCCEEEECCccccchhHHhc-----------cCCceEEEEEChHHhCCccccc-ccccchhhHHHHhChhhCCEEEEc
Confidence 3678888886655433311111 1345678888873222111000 000011111222346789999998
Q ss_pred CCChhhh-hcCCC-CCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHH
Q 001292 361 DYTLPML-YSVLD-AGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVG 438 (1106)
Q Consensus 361 S~~~~~~-~~gi~-~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k 438 (1106)
+...... ...++ ..++.+||+ |++. ..+.+.. ....+...++++||+.+ .|+.+.+++|+.
T Consensus 165 s~~~~~~l~~~~~~~~~v~~ip~-g~~~---~~~~~~~---------~~~~~~~~i~~vgrl~~----~K~~~~li~a~~ 227 (372)
T cd04949 165 TEQQKQDLQKQFGNYNPIYTIPV-GSID---PLKLPAQ---------FKQRKPHKIITVARLAP----EKQLDQLIKAFA 227 (372)
T ss_pred cHHHHHHHHHHhCCCCceEEEcc-cccC---hhhcccc---------hhhcCCCeEEEEEccCc----ccCHHHHHHHHH
Confidence 8655443 22222 234889997 6776 3332211 01235568999999887 899999999998
Q ss_pred HhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHH
Q 001292 439 PLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSL 518 (1106)
Q Consensus 439 ~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlv 518 (1106)
.+.++ .|+++ |+|+|.++.. ..++++++++++.+ +|.+.|+.+++..+|+.||++|+||..| |||++
T Consensus 228 ~l~~~-------~~~~~-l~i~G~g~~~--~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~ad~~v~~S~~E--g~~~~ 294 (372)
T cd04949 228 KVVKQ-------VPDAT-LDIYGYGDEE--EKLKELIEELGLED-YVFLKGYTRDLDEVYQKAQLSLLTSQSE--GFGLS 294 (372)
T ss_pred HHHHh-------CCCcE-EEEEEeCchH--HHHHHHHHHcCCcc-eEEEcCCCCCHHHHHhhhhEEEeccccc--ccChH
Confidence 87643 37888 6889999875 78888889999987 9999999899999999999999999976 99999
Q ss_pred HHHHHHhCCCEEecCCC-CchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHH
Q 001292 519 IVRAMTFGIPVITPDFP-IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTR 597 (1106)
Q Consensus 519 LLEAMA~G~PVIASD~g-GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~ 597 (1106)
++||||+|+|||+++.+ |..+++.++.+|++++++|+++|+++|..+++|++. ..+|++++++.++++.++..+++
T Consensus 295 ~lEAma~G~PvI~~~~~~g~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~~~~---~~~~~~~a~~~~~~~s~~~~~~~ 371 (372)
T cd04949 295 LMEALSHGLPVISYDVNYGPSEIIEDGENGYLVPKGDIEALAEAIIELLNDPKL---LQKFSEAAYENAERYSEENVWEK 371 (372)
T ss_pred HHHHHhCCCCEEEecCCCCcHHHcccCCCceEeCCCcHHHHHHHHHHHHcCHHH---HHHHHHHHHHHHHHhhHHHHHhc
Confidence 99999999999999987 899999999999999999999999999999999987 68899999999777666666554
No 63
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.92 E-value=2.5e-23 Score=233.37 Aligned_cols=305 Identities=15% Similarity=0.145 Sum_probs=203.3
Q ss_pred EEEEEeCCCC-CChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchH----------HH-------H-------HHhHHHHH
Q 001292 224 RIGLILGNMA-KDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHS----------LW-------E-------QIAGQISI 278 (1106)
Q Consensus 224 RIalVlg~L~-~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~----------i~-------r-------~lg~lvki 278 (1106)
|||++...+. .||.+..+..+++.|.+.+..+. ....+.... .+ + ........
T Consensus 1 ~i~~~~~~~~~~GG~E~~~~~l~~~l~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (351)
T cd03804 1 KVAIVHDWLVNIGGGEKVVEALARLFPDADIFTL--VDDPDKLPRLLRLKKIRTSFIQKLPFARRRYRKYLPLMPLAIEQ 78 (351)
T ss_pred CEEEEEeccccCCCHHHHHHHHHHhCCCCCEEEE--eecCCccchhhcCCceeechhhhchhhHhhHhhhCchhhHHHHh
Confidence 6888888887 59999999999998875332222 111111000 00 0 01112334
Q ss_pred hhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCc-----ccc----cchhhhh---hhHHhHHHH
Q 001292 279 LGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDS-----LAN----RLPVYVE---RGFQNLLSY 346 (1106)
Q Consensus 279 Ir~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~-----Ls~----r~~~Y~~---~gleklis~ 346 (1106)
+...++|+|+.+....... +.. ..++|.++.+|... +.. ....... ....+....
T Consensus 79 ~~~~~~D~v~~~~~~~~~~--~~~-----------~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (351)
T cd03804 79 FDLSGYDLVISSSHAVAKG--VIT-----------RPDQLHICYCHTPMRYAWDLYHDYLKESGLGKRLALRLLLHYLRI 145 (351)
T ss_pred ccccCCCEEEEcCcHHhcc--ccC-----------CCCCcEEEEeCCchHHHhcCchHhhhhcccchhhHHHHHHHHHHH
Confidence 4456788887654321111 110 25688888888721 100 0000000 001111221
Q ss_pred H-HHHhccccEEEecCCChhhhhcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCcccc
Q 001292 347 W-KSVFSRVNVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNE 425 (1106)
Q Consensus 347 ~-~~~l~~AD~VIa~S~~~~~~~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~k 425 (1106)
+ ...++.+|.+++.|.............+..+|+| |+|. +.|.+.. .....++++|++..
T Consensus 146 ~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~vi~~-~~d~---~~~~~~~------------~~~~~il~~G~~~~--- 206 (351)
T cd03804 146 WDRRSAARVDYFIANSRFVARRIKKYYGRDATVIYP-PVDT---DRFTPAE------------EKEDYYLSVGRLVP--- 206 (351)
T ss_pred HHHHHhcCCCEEEECCHHHHHHHHHHhCCCcEEECC-CCCH---hhcCcCC------------CCCCEEEEEEcCcc---
Confidence 2 3457899999999977665532222335678887 7887 4443321 23447899999888
Q ss_pred ccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCCh--hhHHHHHHHcCe
Q 001292 426 LSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFN--GDVNGVLLMADI 503 (1106)
Q Consensus 426 g~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~--eDL~~LyaaADV 503 (1106)
.||++.+++|++.+ + ++ |+|+|+|++. +.+++ +..+ +|.|+|+. +++..+|+.||+
T Consensus 207 -~K~~~~li~a~~~~-----------~-~~-l~ivG~g~~~--~~l~~-----~~~~-~V~~~g~~~~~~~~~~~~~ad~ 264 (351)
T cd03804 207 -YKRIDLAIEAFNKL-----------G-KR-LVVIGDGPEL--DRLRA-----KAGP-NVTFLGRVSDEELRDLYARARA 264 (351)
T ss_pred -ccChHHHHHHHHHC-----------C-Cc-EEEEECChhH--HHHHh-----hcCC-CEEEecCCCHHHHHHHHHhCCE
Confidence 89999999999654 2 45 6889999864 55554 4455 89999965 559999999999
Q ss_pred EEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Q 001292 504 VLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNG-KLSKFARTVASAG 582 (1106)
Q Consensus 504 fV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDp-elRk~r~~mGe~A 582 (1106)
+++||. | +||++++||||||+|||+++.++..|++.++.+|++++++|+++++++|..+++|+ .. .+.+++++
T Consensus 265 ~v~ps~-e--~~g~~~~Eama~G~Pvi~~~~~~~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~~~~~---~~~~~~~~ 338 (351)
T cd03804 265 FLFPAE-E--DFGIVPVEAMASGTPVIAYGKGGALETVIDGVTGILFEEQTVESLAAAVERFEKNEDFD---PQAIRAHA 338 (351)
T ss_pred EEECCc-C--CCCchHHHHHHcCCCEEEeCCCCCcceeeCCCCEEEeCCCCHHHHHHHHHHHHhCcccC---HHHHHHHH
Confidence 999998 7 99999999999999999999999999999999999999999999999999999998 43 45566665
Q ss_pred HHHHHHhc
Q 001292 583 RLHAKNML 590 (1106)
Q Consensus 583 re~ake~f 590 (1106)
+++..+.|
T Consensus 339 ~~~~~~~~ 346 (351)
T cd03804 339 ERFSESRF 346 (351)
T ss_pred HhcCHHHH
Confidence 55444444
No 64
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.91 E-value=8.8e-23 Score=243.81 Aligned_cols=330 Identities=12% Similarity=0.088 Sum_probs=221.2
Q ss_pred CCEEEEEeCCCCCChhHH-------------HHHHHHHHHHHC-CCEEEE-EEcCCCCc----hHHHHHHhHHHHHhhcc
Q 001292 222 PPRIGLILGNMAKDSRSL-------------LLITVVKNLQKL-GYVFKI-YAVRSGNS----HSLWEQIAGQISILGQE 282 (1106)
Q Consensus 222 ~~RIalVlg~L~~gGesl-------------~vv~LakaLqe~-GyeVtV-~t~~dg~~----~~i~r~lg~lvkiIr~~ 282 (1106)
..+|.+|++.|....+.+ +-.-+-+.|+++ |.+..+ +.+.++.+ ..+. -.|.+...+..+
T Consensus 355 ~~~VtlviPWl~~~dq~~vy~~~~~F~~p~eQe~~ir~wl~~r~g~~~~~~i~fYpg~~~~~~~SI~-p~gdI~~~L~~f 433 (794)
T PLN02501 355 KQNVTLLVPWLCKSDQELVYPNNLTFSSPEEQESYIRNWLEERIGFKADFKISFYPGKFSKERRSII-PAGDTSQFIPSK 433 (794)
T ss_pred CceEEEEEecCCccccccccCCCcccCCHHHHHHHHHHHHHHhcCCCCCceEEeecchhccCCcccc-chHHHHHHhhcc
Confidence 578889988887632221 222344555343 554322 12233332 2222 345578888899
Q ss_pred CccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHh----HHHHHHHHhccccEEE
Q 001292 283 QYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQN----LLSYWKSVFSRVNVIV 358 (1106)
Q Consensus 283 ~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~glek----lis~~~~~l~~AD~VI 358 (1106)
.+|++|+..+...-+..-..+... +.+ |+|.++|..-. ..+.+|....+.. ++..|...+ +||.|+
T Consensus 434 ~PDVVHLatP~~LGw~~~Glr~Ar-------Kl~-PVVasyHTny~-eYl~~y~~g~L~~~llk~l~~~v~r~-hcD~VI 503 (794)
T PLN02501 434 DADIAILEEPEHLNWYHHGKRWTD-------KFN-HVVGVVHTNYL-EYIKREKNGALQAFFVKHINNWVTRA-YCHKVL 503 (794)
T ss_pred CCCEEEECCchhhccHHHHHHHHH-------HcC-CeEEEEeCCcH-HHHhHhcchhHHHHHHHHHHHHHHHh-hCCEEE
Confidence 999999977665443310111111 134 89999999532 1222232222233 222332222 289999
Q ss_pred ecCCChhhhhcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHH
Q 001292 359 FPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVG 438 (1106)
Q Consensus 359 a~S~~~~~~~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k 438 (1106)
++|..... ++...+..+ + |||. +.|.+..... .+.++++......++++||+.. .||++.+|+|++
T Consensus 504 aPS~atq~----L~~~vI~nV-n-GVDt---e~F~P~~r~~-~~r~lgi~~~~kgiLfVGRLa~----EKGld~LLeAla 569 (794)
T PLN02501 504 RLSAATQD----LPKSVICNV-H-GVNP---KFLKIGEKVA-EERELGQQAFSKGAYFLGKMVW----AKGYRELIDLLA 569 (794)
T ss_pred cCCHHHHH----hcccceeec-c-cccc---cccCCcchhH-HHHhcCCccccCceEEEEcccc----cCCHHHHHHHHH
Confidence 99954432 223222222 3 8998 7777754322 2356777655556899999998 999999999998
Q ss_pred HhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHH
Q 001292 439 PLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSL 518 (1106)
Q Consensus 439 ~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlv 518 (1106)
.+..+ .|+++ |+|+|+||.+ +.+++++.++++ +|.|+|..+++..+|+.+||||+||..| +||++
T Consensus 570 ~L~~~-------~pnvr-LvIVGDGP~r--eeLe~la~eLgL---~V~FLG~~dd~~~lyasaDVFVlPS~sE--gFGlV 634 (794)
T PLN02501 570 KHKNE-------LDGFN-LDVFGNGEDA--HEVQRAAKRLDL---NLNFLKGRDHADDSLHGYKVFINPSISD--VLCTA 634 (794)
T ss_pred HHHhh-------CCCeE-EEEEcCCccH--HHHHHHHHHcCC---EEEecCCCCCHHHHHHhCCEEEECCCcc--cchHH
Confidence 77532 26787 7899999986 899999998876 4899999988999999999999999987 99999
Q ss_pred HHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHH
Q 001292 519 IVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRY 598 (1106)
Q Consensus 519 LLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y 598 (1106)
++||||||+|||+++.++. +++.++.+|+++ +|+++++++|.++++++..+ ..++. ...+.|+..++++
T Consensus 635 lLEAMA~GlPVVATd~pG~-e~V~~g~nGll~--~D~EafAeAI~~LLsd~~~r---l~~~a-----~~~~SWeAaadrL 703 (794)
T PLN02501 635 TAEALAMGKFVVCADHPSN-EFFRSFPNCLTY--KTSEDFVAKVKEALANEPQP---LTPEQ-----RYNLSWEAATQRF 703 (794)
T ss_pred HHHHHHcCCCEEEecCCCC-ceEeecCCeEec--CCHHHHHHHHHHHHhCchhh---hHHHH-----HhhCCHHHHHHHH
Confidence 9999999999999999985 447677788765 79999999999999988752 22221 3366777777776
Q ss_pred HHHH
Q 001292 599 ARIL 602 (1106)
Q Consensus 599 ~eLy 602 (1106)
.+.-
T Consensus 704 le~~ 707 (794)
T PLN02501 704 MEYS 707 (794)
T ss_pred HHhh
Confidence 6643
No 65
>PLN02275 transferase, transferring glycosyl groups
Probab=99.91 E-value=5.3e-22 Score=227.21 Aligned_cols=254 Identities=14% Similarity=0.088 Sum_probs=176.4
Q ss_pred hhccCccEEEEccccH---HHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccc-cchhhhhhhHHhHHHHH-HHHhcc
Q 001292 279 LGQEQYSLIDWSIFDG---IIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLAN-RLPVYVERGFQNLLSYW-KSVFSR 353 (1106)
Q Consensus 279 Ir~~~pDiIh~~~~~~---i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~-r~~~Y~~~gleklis~~-~~~l~~ 353 (1106)
++..+||+||.+.... .+...+..+. .++|+|+++|+..... ...........++...+ +..++.
T Consensus 96 ~~~~~~DvV~~~~~~~~~~~~~~~~~~~~----------~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 165 (371)
T PLN02275 96 VKIPRPDVFLVQNPPSVPTLAVVKLACWL----------RRAKFVIDWHNFGYTLLALSLGRSHPLVRLYRWYERHYGKM 165 (371)
T ss_pred hhCCCCCEEEEeCCCCcHHHHHHHHHHHH----------hCCCEEEEcCCccHHHHhcccCCCCHHHHHHHHHHHHHHhh
Confidence 3457999999976443 2333344432 5689999999852100 00000000011122222 235678
Q ss_pred ccEEEecCCChhhhh---cCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCH
Q 001292 354 VNVIVFPDYTLPMLY---SVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDY 430 (1106)
Q Consensus 354 AD~VIa~S~~~~~~~---~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~ 430 (1106)
+|.++++|....+.. .+.+ +.+|+| ++ . +.|.+..... .+. .++..+++++||+.+ .|++
T Consensus 166 ad~ii~~S~~~~~~l~~~~g~~---i~vi~n-~~-~---~~f~~~~~~~----~~~-~~~~~~i~~~grl~~----~k~~ 228 (371)
T PLN02275 166 ADGHLCVTKAMQHELDQNWGIR---ATVLYD-QP-P---EFFRPASLEI----RLR-PNRPALVVSSTSWTP----DEDF 228 (371)
T ss_pred CCEEEECCHHHHHHHHHhcCCC---eEEECC-CC-H---HHcCcCCchh----ccc-CCCcEEEEEeCceec----cCCH
Confidence 999999997766542 2332 789998 43 3 4565432211 111 224457888999887 8999
Q ss_pred HHHHHHHHHhHHHHHhhc----------cCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcC-C--hhhHHHH
Q 001292 431 AVAMHDVGPLLIKYARRN----------SVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYG-F--NGDVNGV 497 (1106)
Q Consensus 431 dlLLeA~k~Ll~k~aklk----------~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG-~--~eDL~~L 497 (1106)
+.+++|+..+...+...+ ...|+++ ++|+|+|+++ ++++++++++|+++ |+|.+ + .+++..+
T Consensus 229 ~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~-l~ivG~G~~~--~~l~~~~~~~~l~~--v~~~~~~~~~~~~~~~ 303 (371)
T PLN02275 229 GILLEAAVMYDRRVAARLNESDSASGKQSLYPRLL-FIITGKGPQK--AMYEEKISRLNLRH--VAFRTMWLEAEDYPLL 303 (371)
T ss_pred HHHHHHHHHHHhhhhhccccccccccccccCCCeE-EEEEeCCCCH--HHHHHHHHHcCCCc--eEEEcCCCCHHHHHHH
Confidence 999999987754332221 2347898 6899999986 99999999999984 66654 3 5899999
Q ss_pred HHHcCeEEEccC-CCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHH
Q 001292 498 LLMADIVLYGSS-QVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFI 566 (1106)
Q Consensus 498 yaaADVfV~PS~-~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LL 566 (1106)
|+.||++|+|+. ..+|++|++++||||||+|||+++.++++|+|.++.+|++++ |+++|+++|.+++
T Consensus 304 l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~eiv~~g~~G~lv~--~~~~la~~i~~l~ 371 (371)
T PLN02275 304 LGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIGELVKDGKNGLLFS--SSSELADQLLELL 371 (371)
T ss_pred HHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCChHHHccCCCCeEEEC--CHHHHHHHHHHhC
Confidence 999999998642 223589999999999999999999999999999999999997 7999999998874
No 66
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.90 E-value=9.5e-23 Score=225.64 Aligned_cols=334 Identities=17% Similarity=0.172 Sum_probs=239.4
Q ss_pred EEEEEeCCCCC--ChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchH--------------------------HHHHHhHH
Q 001292 224 RIGLILGNMAK--DSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHS--------------------------LWEQIAGQ 275 (1106)
Q Consensus 224 RIalVlg~L~~--gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~--------------------------i~r~lg~l 275 (1106)
+||+|++-+-+ ||.+..+..|.+.|-+.|+.|.+++...|.... ++..+..+
T Consensus 2 ~i~mVsdff~P~~ggveshiy~lSq~li~lghkVvvithayg~r~girylt~glkVyylp~~v~~n~tT~ptv~~~~Pll 81 (426)
T KOG1111|consen 2 RILMVSDFFYPSTGGVESHIYALSQCLIRLGHKVVVITHAYGNRVGIRYLTNGLKVYYLPAVVGYNQTTFPTVFSDFPLL 81 (426)
T ss_pred cceeeCcccccCCCChhhhHHHhhcchhhcCCeEEEEeccccCccceeeecCCceEEEEeeeeeecccchhhhhccCccc
Confidence 57888777655 899999999999999999999999876543211 11111224
Q ss_pred HHHhhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCC-cccccchhhhhhhHHhHHHHHHHHhccc
Q 001292 276 ISILGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQED-SLANRLPVYVERGFQNLLSYWKSVFSRV 354 (1106)
Q Consensus 276 vkiIr~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna-~Ls~r~~~Y~~~gleklis~~~~~l~~A 354 (1106)
..++..++..++|-|...+.+..-...... ..|.++++|-|.. .+.. ..- .. ..+ .....+...
T Consensus 82 r~i~lrE~I~ivhghs~fS~lahe~l~har--------tMGlktVfTdHSlfGfad-~~s-i~--~n~---ll~~sL~~i 146 (426)
T KOG1111|consen 82 RPILLRERIEIVHGHSPFSYLAHEALMHAR--------TMGLKTVFTDHSLFGFAD-IGS-IL--TNK---LLPLSLANI 146 (426)
T ss_pred chhhhhhceEEEecCChHHHHHHHHHHHHH--------hcCceEEEeccccccccc-hhh-hh--hcc---eeeeeecCC
Confidence 455556678888888877666432211111 2578999998882 1100 000 00 011 111235677
Q ss_pred cEEEecCCChhhh---hcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHH
Q 001292 355 NVIVFPDYTLPML---YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYA 431 (1106)
Q Consensus 355 D~VIa~S~~~~~~---~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~d 431 (1106)
|.+|+.++...+- ...++++++.+|||. ++. +.|.|.... ..+.+...|+.+||+.. +||.|
T Consensus 147 d~~IcVshtskentvlr~~L~p~kvsvIPnA-v~~---~~f~P~~~~-------~~S~~i~~ivv~sRLvy----rKGiD 211 (426)
T KOG1111|consen 147 DRIICVSHTSKENTVLRGALAPAKVSVIPNA-VVT---HTFTPDAAD-------KPSADIITIVVASRLVY----RKGID 211 (426)
T ss_pred CcEEEEeecCCCceEEEeccCHhHeeeccce-eec---cccccCccc-------cCCCCeeEEEEEeeeee----ccchH
Confidence 8888887554433 667888999999995 776 788875322 11234478999999987 88999
Q ss_pred HHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcC--ChhhHHHHHHHcCeEEEccC
Q 001292 432 VAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYG--FNGDVNGVLLMADIVLYGSS 509 (1106)
Q Consensus 432 lLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG--~~eDL~~LyaaADVfV~PS~ 509 (1106)
++++++.++.+ ..|+++ ++|+|+||.+ ..+++..+++.+.+ +|.++| +.+++.+.|..-|||++||.
T Consensus 212 ll~~iIp~vc~-------~~p~vr-fii~GDGPk~--i~lee~lEk~~l~~-rV~~lG~v~h~~Vr~vl~~G~IFlntSl 280 (426)
T KOG1111|consen 212 LLLEIIPSVCD-------KHPEVR-FIIIGDGPKR--IDLEEMLEKLFLQD-RVVMLGTVPHDRVRDVLVRGDIFLNTSL 280 (426)
T ss_pred HHHHHHHHHHh-------cCCCee-EEEecCCccc--chHHHHHHHhhccC-ceEEecccchHHHHHHHhcCcEEeccHH
Confidence 99999977764 349999 5899999987 99999999999998 999999 45889999999999999999
Q ss_pred CCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHh
Q 001292 510 QVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNM 589 (1106)
Q Consensus 510 ~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~ 589 (1106)
.| .||++++|||+||+|||++++||++|++.++ . ......+++++++++.+.++.-.. .-+...+.+++.
T Consensus 281 TE--afc~~ivEAaScGL~VVsTrVGGIpeVLP~d-~-i~~~~~~~~dl~~~v~~ai~~~~~------~p~~~h~~v~~~ 350 (426)
T KOG1111|consen 281 TE--AFCMVIVEAASCGLPVVSTRVGGIPEVLPED-M-ITLGEPGPDDLVGAVEKAITKLRT------LPLEFHDRVKKM 350 (426)
T ss_pred HH--HHHHHHHHHHhCCCEEEEeecCCccccCCcc-c-eeccCCChHHHHHHHHHHHHHhcc------CchhHHHHHHHh
Confidence 87 9999999999999999999999999999664 2 223345688888888877763321 112333444444
Q ss_pred -cHHHHHHHHHHHHHHHhcC
Q 001292 590 -LALDCVTRYARILENVLNF 608 (1106)
Q Consensus 590 -fsee~v~~Y~eLyeslLk~ 608 (1106)
.|.+++++-+++|.++.+.
T Consensus 351 y~w~dVa~rTekvy~r~~~t 370 (426)
T KOG1111|consen 351 YSWKDVAERTEKVYDRAATT 370 (426)
T ss_pred ccHHHHHHHHHHHHHHHhhc
Confidence 5677777999999998764
No 67
>PHA01633 putative glycosyl transferase group 1
Probab=99.89 E-value=3.3e-21 Score=218.66 Aligned_cols=298 Identities=13% Similarity=0.033 Sum_probs=203.3
Q ss_pred CChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHHHHHhHHHHHhhccCccEEEEccccHHHHHHHHHHHhhhhcccCC
Q 001292 234 KDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLWEQIAGQISILGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEP 313 (1106)
Q Consensus 234 ~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r~lg~lvkiIr~~~pDiIh~~~~~~i~v~~La~k~~idII~te~ 313 (1106)
...-....-++++.|++.|--|++++..- .+......++..+.....+-..+.....+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 67 (335)
T PHA01633 10 YSSISNVSEDIAEVLRENGEIVTITKNPF---------------YIPKAEKLIVFIPFHPPSLNPYLYAYYQF------- 67 (335)
T ss_pred hhhhhhHHHHHHHHHHhCCcEEEEecCCc---------------ccCccceEEEEeecCCcccchHHhhhhhh-------
Confidence 34445566778888889888888875431 11111222333333333333344333333
Q ss_pred CCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecCCChhhh--hcCCCCCCEEEeCCCCCCcccccc
Q 001292 314 FHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAVEA 391 (1106)
Q Consensus 314 ~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~~~~~~--~~gi~~~KI~VIpN~GVDl~~~e~ 391 (1106)
..+.|++.+.|+... . ..+...+.+.+.+|+.|...... ..+++.. + +|++ |+|+ +.
T Consensus 68 ~~~~~~~tt~~g~~~--------~-------~~y~~~m~~~~~vIavS~~t~~~L~~~G~~~~-i-~I~~-GVD~---~~ 126 (335)
T PHA01633 68 KGKKYFYTTCDGIPN--------I-------EIVNKYLLQDVKFIPNSKFSAENLQEVGLQVD-L-PVFH-GINF---KI 126 (335)
T ss_pred cCCCceEEeeCCcCc--------h-------HHHHHHHhcCCEEEeCCHHHHHHHHHhCCCCc-e-eeeC-CCCh---hh
Confidence 245788999898621 1 11233344556788888555443 3455543 3 4666 8998 67
Q ss_pred cCcch-hHHHHHHHcCCC-CCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHH
Q 001292 392 YSKSH-EKYQLRKENGFL-KDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYND 469 (1106)
Q Consensus 392 F~ps~-s~~~LR~~lGL~-~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~e 469 (1106)
|.+.. ....+|++++.. ++.++++++||+.. +||++.+++|++.|.++.... ..+++ ++++|. .
T Consensus 127 f~p~~~~~~~~r~~~~~~~~~~~~i~~vGRl~~----~KG~~~LI~A~~~L~~~~p~~---~~~i~-l~ivG~------~ 192 (335)
T PHA01633 127 VENAEKLVPQLKQKLDKDFPDTIKFGIVSGLTK----RKNMDLMLQVFNELNTKYPDI---AKKIH-FFVISH------K 192 (335)
T ss_pred cCccchhhHHHHHHhCcCCCCCeEEEEEeCCcc----ccCHHHHHHHHHHHHHhCCCc---cccEE-EEEEcH------H
Confidence 76643 234567777653 57789999999988 999999999998887543110 12456 466663 1
Q ss_pred HHHHHHHHcCCCCCcEEEcC-----ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhcc-
Q 001292 470 ALQEVASRLGLLEHSVRHYG-----FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAE- 543 (1106)
Q Consensus 470 eLkeLaeklGL~d~rV~flG-----~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~D- 543 (1106)
..+++++.+ +|.|+| ..+++..+|++||++|+||..| +||++++||||||+|||+++.++++|++.+
T Consensus 193 ----~~~~l~l~~-~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~~E--gfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~ 265 (335)
T PHA01633 193 ----QFTQLEVPA-NVHFVAEFGHNSREYIFAFYGAMDFTIVPSGTE--GFGMPVLESMAMGTPVIHQLMPPLDEFTSWQ 265 (335)
T ss_pred ----HHHHcCCCC-cEEEEecCCCCCHHHHHHHHHhCCEEEECCccc--cCCHHHHHHHHcCCCEEEccCCCceeecCCc
Confidence 134567877 899985 2478999999999999999986 999999999999999999999999887542
Q ss_pred -----------------CCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Q 001292 544 -----------------GAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYA 599 (1106)
Q Consensus 544 -----------------g~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~ 599 (1106)
...|++++..|+++|+++|..+++..+. ...+.++++.++++.++....+|.
T Consensus 266 ~~~Li~~~~v~~~~~~~~g~g~~~~~~d~~~la~ai~~~~~~~~~----~~~~~~~~~~a~~f~~~~~~~~~~ 334 (335)
T PHA01633 266 WNLLIKSSKVEEYYDKEHGQKWKIHKFQIEDMANAIILAFELQDR----EERSMKLKELAKKYDIRNLYTRFL 334 (335)
T ss_pred cceeeCCCCHHHhcCcccCceeeecCCCHHHHHHHHHHHHhccCh----hhhhHHHHHHHHhcCHHHHHHHhh
Confidence 1246788888999999999999666542 333678889999988888877775
No 68
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.89 E-value=3.9e-21 Score=215.31 Aligned_cols=304 Identities=16% Similarity=0.151 Sum_probs=212.0
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCch---------------------H-------H---HHHHh
Q 001292 225 IGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSH---------------------S-------L---WEQIA 273 (1106)
Q Consensus 225 IalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~---------------------~-------i---~r~lg 273 (1106)
|++..+.. ||....+..++++|.++||+|++++...+... . . ...+.
T Consensus 2 ~~~~~~~~--gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (350)
T cd03785 2 ILIAGGGT--GGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPKAGIPLHTIPVGGLRRKGSLKKLKAPFKLLKGVL 79 (350)
T ss_pred EEEEecCc--hhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcccccCCceEEEEecCcCCCChHHHHHHHHHHHHHHH
Confidence 44444443 68888999999999999999999976432100 0 0 11112
Q ss_pred HHHHHhhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhcc
Q 001292 274 GQISILGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSR 353 (1106)
Q Consensus 274 ~lvkiIr~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~ 353 (1106)
.+.++++..+||+||.+.....+...+..+. .++|+|++.|+.. + ....+ ..+..
T Consensus 80 ~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~----------~~~p~v~~~~~~~--------~-----~~~~~--~~~~~ 134 (350)
T cd03785 80 QARKILKKFKPDVVVGFGGYVSGPVGLAAKL----------LGIPLVIHEQNAV--------P-----GLANR--LLARF 134 (350)
T ss_pred HHHHHHHhcCCCEEEECCCCcchHHHHHHHH----------hCCCEEEEcCCCC--------c-----cHHHH--HHHHh
Confidence 2456778889999998765444444444432 5789887655431 0 01111 22346
Q ss_pred ccEEEecCCChhhhhcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHH-H
Q 001292 354 VNVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYA-V 432 (1106)
Q Consensus 354 AD~VIa~S~~~~~~~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~d-l 432 (1106)
+|.|++++...... ++..++.+|+| |+|. +.+.+.. . +++++++++.++++++|+... .|+.. .
T Consensus 135 ~~~vi~~s~~~~~~---~~~~~~~~i~n-~v~~---~~~~~~~---~-~~~~~~~~~~~~i~~~~g~~~----~~~~~~~ 199 (350)
T cd03785 135 ADRVALSFPETAKY---FPKDKAVVTGN-PVRE---EILALDR---E-RARLGLRPGKPTLLVFGGSQG----ARAINEA 199 (350)
T ss_pred hCEEEEcchhhhhc---CCCCcEEEECC-CCch---HHhhhhh---h-HHhcCCCCCCeEEEEECCcHh----HHHHHHH
Confidence 88999888665443 56678999998 7886 4443321 1 777888888888888876544 44543 4
Q ss_pred HHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCC
Q 001292 433 AMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVE 512 (1106)
Q Consensus 433 LLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~Ee 512 (1106)
++++++.+.. +++++++++|.+ + .+.+++.++++ .+ +|++.|+.+++..+|+.||++|.+|
T Consensus 200 l~~a~~~l~~---------~~~~~~~i~G~g-~--~~~l~~~~~~~--~~-~v~~~g~~~~~~~~l~~ad~~v~~s---- 260 (350)
T cd03785 200 VPEALAELLR---------KRLQVIHQTGKG-D--LEEVKKAYEEL--GV-NYEVFPFIDDMAAAYAAADLVISRA---- 260 (350)
T ss_pred HHHHHHHhhc---------cCeEEEEEcCCc-c--HHHHHHHHhcc--CC-CeEEeehhhhHHHHHHhcCEEEECC----
Confidence 4566654431 345556788888 3 37788888765 34 8999999999999999999999754
Q ss_pred CCCcHHHHHHHHhCCCEEecCCCC--------chhhhccCCeEEEEcCC--CHHHHHHHHHHHHhCcccHHHHHHHHHHH
Q 001292 513 QGFPSLIVRAMTFGIPVITPDFPI--------IKEYVAEGAQVIFFQKD--NPEGLSRAFSLFISNGKLSKFARTVASAG 582 (1106)
Q Consensus 513 EGFGlvLLEAMA~G~PVIASD~gG--------I~EiV~Dg~nG~LV~~~--D~eeLAeAI~~LLsDpelRk~r~~mGe~A 582 (1106)
.+++++|||++|+|||+++.++ ..+.+.+..+|++++++ |+++|+++|..+++|++. +++|+.++
T Consensus 261 --g~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~---~~~~~~~~ 335 (350)
T cd03785 261 --GASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSDPER---LKAMAEAA 335 (350)
T ss_pred --CHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcCHHH---HHHHHHHH
Confidence 2689999999999999987654 34667777799999887 899999999999998877 68899999
Q ss_pred HHHHHHhcHHHH
Q 001292 583 RLHAKNMLALDC 594 (1106)
Q Consensus 583 re~ake~fsee~ 594 (1106)
++.+..+..+++
T Consensus 336 ~~~~~~~~~~~i 347 (350)
T cd03785 336 RSLARPDAAERI 347 (350)
T ss_pred HhcCCCCHHHHH
Confidence 988765444443
No 69
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.88 E-value=1.6e-20 Score=212.30 Aligned_cols=313 Identities=15% Similarity=0.100 Sum_probs=217.1
Q ss_pred CEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCch-------------------------------HHHHH
Q 001292 223 PRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSH-------------------------------SLWEQ 271 (1106)
Q Consensus 223 ~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~-------------------------------~i~r~ 271 (1106)
+||+++.+.. +|....++.+++.|++.||+|++++...+... .....
T Consensus 2 ~~i~i~~~g~--gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (357)
T PRK00726 2 KKILLAGGGT--GGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKAGIEFHFIPSGGLRRKGSLANLKAPFKLLKG 79 (357)
T ss_pred cEEEEEcCcc--hHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccCCCcEEEEeccCcCCCChHHHHHHHHHHHHH
Confidence 5777776655 47777889999999999999999987442100 00112
Q ss_pred HhHHHHHhhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHh
Q 001292 272 IAGQISILGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVF 351 (1106)
Q Consensus 272 lg~lvkiIr~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l 351 (1106)
+..+.++++..++|+||.+.....+...+..+. .++|+|++.|... +. ...++ .+
T Consensus 80 ~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~----------~~~p~v~~~~~~~--------~~-~~~r~------~~ 134 (357)
T PRK00726 80 VLQARKILKRFKPDVVVGFGGYVSGPGGLAARL----------LGIPLVIHEQNAV--------PG-LANKL------LA 134 (357)
T ss_pred HHHHHHHHHhcCCCEEEECCCcchhHHHHHHHH----------cCCCEEEEcCCCC--------cc-HHHHH------HH
Confidence 222456677789999999986555554444432 5789998765421 00 01111 23
Q ss_pred ccccEEEecCCChhhhhcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHH
Q 001292 352 SRVNVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYA 431 (1106)
Q Consensus 352 ~~AD~VIa~S~~~~~~~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~d 431 (1106)
+.+|.+++.+... ... .+..++.+||| |+|. +.+.+. ..+.+++++++.++|+++|+... .++..
T Consensus 135 ~~~d~ii~~~~~~--~~~-~~~~~i~vi~n-~v~~---~~~~~~----~~~~~~~~~~~~~~i~~~gg~~~----~~~~~ 199 (357)
T PRK00726 135 RFAKKVATAFPGA--FPE-FFKPKAVVTGN-PVRE---EILALA----APPARLAGREGKPTLLVVGGSQG----ARVLN 199 (357)
T ss_pred HHhchheECchhh--hhc-cCCCCEEEECC-CCCh---Hhhccc----chhhhccCCCCCeEEEEECCcHh----HHHHH
Confidence 4677777766432 111 56789999998 7886 333321 12345677777888888887554 55544
Q ss_pred -HHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCC
Q 001292 432 -VAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQ 510 (1106)
Q Consensus 432 -lLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~ 510 (1106)
.+++|+.++.. . + . .++++|+++. +.+.+..+ +++ +|.+.|+.+++..+|+.||+++++|
T Consensus 200 ~~l~~a~~~~~~-------~-~-~-~~~~~G~g~~---~~~~~~~~-~~~---~v~~~g~~~~~~~~~~~~d~~i~~~-- 260 (357)
T PRK00726 200 EAVPEALALLPE-------A-L-Q-VIHQTGKGDL---EEVRAAYA-AGI---NAEVVPFIDDMAAAYAAADLVICRA-- 260 (357)
T ss_pred HHHHHHHHHhhh-------C-c-E-EEEEcCCCcH---HHHHHHhh-cCC---cEEEeehHhhHHHHHHhCCEEEECC--
Confidence 34477765531 1 2 2 3678899874 45554445 555 3999999999999999999999764
Q ss_pred CCCCCcHHHHHHHHhCCCEEecCCCC--------chhhhccCCeEEEEcCCC--HHHHHHHHHHHHhCcccHHHHHHHHH
Q 001292 511 VEQGFPSLIVRAMTFGIPVITPDFPI--------IKEYVAEGAQVIFFQKDN--PEGLSRAFSLFISNGKLSKFARTVAS 580 (1106)
Q Consensus 511 EeEGFGlvLLEAMA~G~PVIASD~gG--------I~EiV~Dg~nG~LV~~~D--~eeLAeAI~~LLsDpelRk~r~~mGe 580 (1106)
.+.+++|||++|+|||++..++ ..+.+.+..+|+++++.| +++|+++|.++++|+++ +++|++
T Consensus 261 ----g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~---~~~~~~ 333 (357)
T PRK00726 261 ----GASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPER---LEAMAE 333 (357)
T ss_pred ----CHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCHHH---HHHHHH
Confidence 3689999999999999987642 246677778999998887 99999999999999987 688999
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHH
Q 001292 581 AGRLHAKNMLALDCVTRYARILE 603 (1106)
Q Consensus 581 ~Are~ake~fsee~v~~Y~eLye 603 (1106)
++++.+++......++.+.+++.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 334 AARALGKPDAAERLADLIEELAR 356 (357)
T ss_pred HHHhcCCcCHHHHHHHHHHHHhh
Confidence 99998876666676667766653
No 70
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.87 E-value=1.2e-20 Score=211.37 Aligned_cols=304 Identities=17% Similarity=0.149 Sum_probs=206.1
Q ss_pred CEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchH-------------------------------HHHH
Q 001292 223 PRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHS-------------------------------LWEQ 271 (1106)
Q Consensus 223 ~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~-------------------------------i~r~ 271 (1106)
+||.++.|..+ |.......|+++|.++||+|++++...+.... .+..
T Consensus 1 ~~i~~~~g~~~--g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~~~~~~ 78 (348)
T TIGR01133 1 KKVVLAAGGTG--GHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPKAGIEFYFIPVGGLRRKGSFRLIKTPLKLLKA 78 (348)
T ss_pred CeEEEEeCccH--HHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccccCCCceEEEeccCcCCCChHHHHHHHHHHHHH
Confidence 37888887764 44446679999999999999999852210000 0111
Q ss_pred HhHHHHHhhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHh
Q 001292 272 IAGQISILGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVF 351 (1106)
Q Consensus 272 lg~lvkiIr~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l 351 (1106)
+..+.++++..+||+||.+.....+...+..+. .++|+|++.++.. . ....+ ...
T Consensus 79 ~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~----------~~~p~v~~~~~~~-------~------~~~~~--~~~ 133 (348)
T TIGR01133 79 VFQARRILKKFKPDAVIGFGGYVSGPAGLAAKL----------LGIPLFHHEQNAV-------P------GLTNK--LLS 133 (348)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccHHHHHHHHH----------cCCCEEEECCCCC-------c------cHHHH--HHH
Confidence 122456678889999999876555554444432 5688875433210 0 01111 124
Q ss_pred ccccEEEecCCChhhhhcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHH
Q 001292 352 SRVNVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYA 431 (1106)
Q Consensus 352 ~~AD~VIa~S~~~~~~~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~d 431 (1106)
+.+|.+++.+....... +..+|+| |+|. ..+.+.. .+..++++++.++|+++|+... .|+..
T Consensus 134 ~~~d~ii~~~~~~~~~~------~~~~i~n-~v~~---~~~~~~~----~~~~~~~~~~~~~i~~~gg~~~----~~~~~ 195 (348)
T TIGR01133 134 RFAKKVLISFPGAKDHF------EAVLVGN-PVRQ---EIRSLPV----PRERFGLREGKPTILVLGGSQG----AKILN 195 (348)
T ss_pred HHhCeeEECchhHhhcC------CceEEcC-CcCH---HHhcccc----hhhhcCCCCCCeEEEEECCchh----HHHHH
Confidence 56888888887554332 2368887 7875 2332221 1345788888889999986544 55543
Q ss_pred -HHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCC
Q 001292 432 -VAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQ 510 (1106)
Q Consensus 432 -lLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~ 510 (1106)
.+++|++.+.. +++++++++|+++. +.+++.++++++.+ .|.|. .. ++..+|+.||++|.+|
T Consensus 196 ~~l~~a~~~l~~---------~~~~~~~~~g~~~~---~~l~~~~~~~~l~~-~v~~~-~~-~~~~~l~~ad~~v~~~-- 258 (348)
T TIGR01133 196 ELVPKALAKLAE---------KGIQIVHQTGKNDL---EKVKNVYQELGIEA-IVTFI-DE-NMAAAYAAADLVISRA-- 258 (348)
T ss_pred HHHHHHHHHHhh---------cCcEEEEECCcchH---HHHHHHHhhCCceE-EecCc-cc-CHHHHHHhCCEEEECC--
Confidence 34567655532 23455566676642 77888888888864 56666 33 8999999999999753
Q ss_pred CCCCCcHHHHHHHHhCCCEEecCCCC-------chhhhccCCeEEEEcCCC--HHHHHHHHHHHHhCcccHHHHHHHHHH
Q 001292 511 VEQGFPSLIVRAMTFGIPVITPDFPI-------IKEYVAEGAQVIFFQKDN--PEGLSRAFSLFISNGKLSKFARTVASA 581 (1106)
Q Consensus 511 EeEGFGlvLLEAMA~G~PVIASD~gG-------I~EiV~Dg~nG~LV~~~D--~eeLAeAI~~LLsDpelRk~r~~mGe~ 581 (1106)
| |.+++|||++|+|||+++.++ ..+++.++.+|++++++| +++|+++|.++++|++. +++|+++
T Consensus 259 ---g-~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~~---~~~~~~~ 331 (348)
T TIGR01133 259 ---G-ASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLDPAN---LEAMAEA 331 (348)
T ss_pred ---C-hhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcCHHH---HHHHHHH
Confidence 2 789999999999999998754 346788888999998876 99999999999999987 6889999
Q ss_pred HHHHHHHhcHHHHH
Q 001292 582 GRLHAKNMLALDCV 595 (1106)
Q Consensus 582 Are~ake~fsee~v 595 (1106)
+++++.++...+.+
T Consensus 332 ~~~~~~~~~~~~i~ 345 (348)
T TIGR01133 332 ARKLAKPDAAKRIA 345 (348)
T ss_pred HHhcCCccHHHHHH
Confidence 98887665555443
No 71
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.87 E-value=3e-20 Score=212.27 Aligned_cols=322 Identities=10% Similarity=0.084 Sum_probs=217.7
Q ss_pred CCCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCC---C-----c-----------hHHHHH----------
Q 001292 221 RPPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSG---N-----S-----------HSLWEQ---------- 271 (1106)
Q Consensus 221 r~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg---~-----~-----------~~i~r~---------- 271 (1106)
+.+||++++++. .+|...++..++++|+++|++|+++...-. + . ...|+.
T Consensus 3 ~~~rili~t~~~-G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 81 (380)
T PRK13609 3 KNPKVLILTAHY-GNGHVQVAKTLEQTFRQKGIKDVIVCDLFGESHPVITEITKYLYLKSYTIGKELYRLFYYGVEKIYD 81 (380)
T ss_pred CCCeEEEEEcCC-CchHHHHHHHHHHHHHhcCCCcEEEEEhHHhcchHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccc
Confidence 567999999887 558888999999999999998655533110 0 0 000110
Q ss_pred -----------HhHHHHHhhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhH
Q 001292 272 -----------IAGQISILGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGF 340 (1106)
Q Consensus 272 -----------lg~lvkiIr~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gl 340 (1106)
...+.++++..+||+|+++..... +..+.... ..++|++..+++....
T Consensus 82 ~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~-~~~~~~~~---------~~~ip~~~~~td~~~~----------- 140 (380)
T PRK13609 82 KKIFSWYANFGRKRLKLLLQAEKPDIVINTFPIIA-VPELKKQT---------GISIPTYNVLTDFCLH----------- 140 (380)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCcCEEEEcChHHH-HHHHHHhc---------CCCCCeEEEeCCCCCC-----------
Confidence 112556777789999998654433 22222211 3568988665543211
Q ss_pred HhHHHHHHHHhccccEEEecCCChhhh--hcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEE-EE
Q 001292 341 QNLLSYWKSVFSRVNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVV-VV 417 (1106)
Q Consensus 341 eklis~~~~~l~~AD~VIa~S~~~~~~--~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL-~V 417 (1106)
.. ..++.+|.+++.+...... ..+++++++.++++ +++. .|.+......++.+++++++.++++ +.
T Consensus 141 ~~------~~~~~ad~i~~~s~~~~~~l~~~gi~~~ki~v~G~-p~~~----~f~~~~~~~~~~~~~~l~~~~~~il~~~ 209 (380)
T PRK13609 141 KI------WVHREVDRYFVATDHVKKVLVDIGVPPEQVVETGI-PIRS----SFELKINPDIIYNKYQLCPNKKILLIMA 209 (380)
T ss_pred cc------cccCCCCEEEECCHHHHHHHHHcCCChhHEEEECc-ccCh----HHcCcCCHHHHHHHcCCCCCCcEEEEEc
Confidence 11 1246889999998665544 45677888888765 5543 3433223445788899987765554 45
Q ss_pred cccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHH
Q 001292 418 GSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGV 497 (1106)
Q Consensus 418 GRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~L 497 (1106)
|++.. .|+...+++++.. .+++++++++|.+.. +.+.++++++.++ + +|+|+|+.+++.++
T Consensus 210 G~~~~----~k~~~~li~~l~~-----------~~~~~~viv~G~~~~-~~~~l~~~~~~~~--~-~v~~~g~~~~~~~l 270 (380)
T PRK13609 210 GAHGV----LGNVKELCQSLMS-----------VPDLQVVVVCGKNEA-LKQSLEDLQETNP--D-ALKVFGYVENIDEL 270 (380)
T ss_pred CCCCC----CcCHHHHHHHHhh-----------CCCcEEEEEeCCCHH-HHHHHHHHHhcCC--C-cEEEEechhhHHHH
Confidence 65443 5788877777631 156776566675432 2477887777554 4 79999999999999
Q ss_pred HHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecC-CCCc----hhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccH
Q 001292 498 LLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPD-FPII----KEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLS 572 (1106)
Q Consensus 498 yaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD-~gGI----~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelR 572 (1106)
|+.||+++. + ++|++++||||||+|||+++ .+|. .+++. .+|+.+...|+++|+++|.++++|++.
T Consensus 271 ~~~aD~~v~----~--~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~--~~G~~~~~~~~~~l~~~i~~ll~~~~~- 341 (380)
T PRK13609 271 FRVTSCMIT----K--PGGITLSEAAALGVPVILYKPVPGQEKENAMYFE--RKGAAVVIRDDEEVFAKTEALLQDDMK- 341 (380)
T ss_pred HHhccEEEe----C--CCchHHHHHHHhCCCEEECCCCCCcchHHHHHHH--hCCcEEEECCHHHHHHHHHHHHCCHHH-
Confidence 999999884 2 56899999999999999986 5542 23443 345555668999999999999999987
Q ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 001292 573 KFARTVASAGRLHAKNMLALDCVTRYARILENV 605 (1106)
Q Consensus 573 k~r~~mGe~Are~ake~fsee~v~~Y~eLyesl 605 (1106)
+++|++++++....+.+++.++.+.++++..
T Consensus 342 --~~~m~~~~~~~~~~~s~~~i~~~i~~~~~~~ 372 (380)
T PRK13609 342 --LLQMKEAMKSLYLPEPADHIVDDILAENHVE 372 (380)
T ss_pred --HHHHHHHHHHhCCCchHHHHHHHHHHhhhhh
Confidence 6889999988877766666677777776543
No 72
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.87 E-value=1.4e-19 Score=214.65 Aligned_cols=301 Identities=14% Similarity=0.140 Sum_probs=196.9
Q ss_pred cCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCccccc-----chhh------hh------hhHHhHH
Q 001292 282 EQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANR-----LPVY------VE------RGFQNLL 344 (1106)
Q Consensus 282 ~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r-----~~~Y------~~------~glekli 344 (1106)
..++++|+|.++..+.....++.. ..+|+|+|+|.-.+... ...| .. .++....
T Consensus 147 ~~~dViH~HeWm~g~a~~~lK~~~---------~~VptVfTtHAT~~GR~l~~g~~~~y~~l~~~~~d~eA~~~~I~~r~ 217 (590)
T cd03793 147 EPAVVAHFHEWQAGVGLPLLRKRK---------VDVSTIFTTHATLLGRYLCAGNVDFYNNLDYFDVDKEAGKRGIYHRY 217 (590)
T ss_pred CCCeEEEEcchhHhHHHHHHHHhC---------CCCCEEEEecccccccccccCCcccchhhhhcchhhhhhcccchHHH
Confidence 578999999999988777776532 57899999997322111 1111 00 0000100
Q ss_pred HHHHHHhccccEEEecCCChhhh---hcCCCCCCEEEeCCCCCCcccccccCcchh----------------HHHHHHHc
Q 001292 345 SYWKSVFSRVNVIVFPDYTLPML---YSVLDAGNFFVIPGSPADVWAVEAYSKSHE----------------KYQLRKEN 405 (1106)
Q Consensus 345 s~~~~~l~~AD~VIa~S~~~~~~---~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s----------------~~~LR~~l 405 (1106)
+.-......||.++++|...... ..+.++++ |||| |+|+ +.|.+..+ +..++..+
T Consensus 218 ~iE~~aa~~Ad~fttVS~it~~E~~~Ll~~~pd~--ViPN-Gid~---~~f~~~~e~~~~~~~~k~ki~~f~~~~~~~~~ 291 (590)
T cd03793 218 CIERAAAHCAHVFTTVSEITAYEAEHLLKRKPDV--VLPN-GLNV---KKFSALHEFQNLHAQSKEKINEFVRGHFYGHY 291 (590)
T ss_pred HHHHHHHhhCCEEEECChHHHHHHHHHhCCCCCE--EeCC-Ccch---hhcccchhhhhhhHHhhhhhhHHHHHHHhhhc
Confidence 01113456899999999765544 44666665 9998 8998 56654321 22356677
Q ss_pred CCCCCcEEEEE-EcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCcc----------HHHH---
Q 001292 406 GFLKDEIVVVV-VGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGY----------NDAL--- 471 (1106)
Q Consensus 406 GL~~d~~VIL~-VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY----------~eeL--- 471 (1106)
++.++++++++ +||+.+ .+||.+.+|+|+.+|............-+.| ++++.....+ .+++
T Consensus 292 ~~~~d~tli~f~~GR~e~---~nKGiDvlIeAl~rLn~~l~~~~~~~tVvaf-ii~p~~~~~~~~~~l~g~~~~~~l~~~ 367 (590)
T cd03793 292 DFDLDKTLYFFTAGRYEF---SNKGADMFLEALARLNYLLKVEGSDTTVVAF-FIMPAKTNNFNVESLKGQAVRKQLRDT 367 (590)
T ss_pred CCCCCCeEEEEEeecccc---ccCCHHHHHHHHHHHHHHHHhcCCCCeEEEE-EEecCccCCcCHHhhcchHHHHHHHHH
Confidence 88878888887 799754 3899999999999987543222211122334 4455432100 0111
Q ss_pred ----------------------------------------------------------------HHHHHHcCCCC-----
Q 001292 472 ----------------------------------------------------------------QEVASRLGLLE----- 482 (1106)
Q Consensus 472 ----------------------------------------------------------------keLaeklGL~d----- 482 (1106)
-..+++++|-+
T Consensus 368 ~~~i~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~dr 447 (590)
T cd03793 368 VNSVKEKIGKRLFEAALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDR 447 (590)
T ss_pred HHHHHHHhhhhhhhHhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCe
Confidence 11122222321
Q ss_pred CcEEEcC-C--------hhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCc----hhhhccC-CeEE
Q 001292 483 HSVRHYG-F--------NGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPII----KEYVAEG-AQVI 548 (1106)
Q Consensus 483 ~rV~flG-~--------~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI----~EiV~Dg-~nG~ 548 (1106)
..|+|.+ + -.+..++|..||++|+||.+| +||++++||||||+|||+|+.+|+ .|++.++ ..|+
T Consensus 448 Vkvif~P~~L~~~~~~~g~~y~E~~~g~dl~v~PS~yE--~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~~~~~~gi 525 (590)
T cd03793 448 VKVVFHPEFLSSTNPLLGLDYEEFVRGCHLGVFPSYYE--PWGYTPAECTVMGIPSITTNLSGFGCFMEEHIEDPESYGI 525 (590)
T ss_pred EEEEEcccccCCCCCcCCcchHHHhhhceEEEeccccC--CCCcHHHHHHHcCCCEEEccCcchhhhhHHHhccCCCceE
Confidence 2355555 1 134789999999999999997 999999999999999999999988 5666544 3577
Q ss_pred EEc-------CCCHHHHHHHHHHHHhCcccHHHHHHHHHHHH--HHHHHhcHHHHHHHHHHHHHHHhc
Q 001292 549 FFQ-------KDNPEGLSRAFSLFISNGKLSKFARTVASAGR--LHAKNMLALDCVTRYARILENVLN 607 (1106)
Q Consensus 549 LV~-------~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Ar--e~ake~fsee~v~~Y~eLyeslLk 607 (1106)
++. +.++++|+++|.++++. .. ++.+..++. +.+..+.|++.+..|.+.|..++.
T Consensus 526 ~V~~r~~~~~~e~v~~La~~m~~~~~~-~~---r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~~Al~ 589 (590)
T cd03793 526 YIVDRRFKSPDESVQQLTQYMYEFCQL-SR---RQRIIQRNRTERLSDLLDWRNLGRYYRKARQLALS 589 (590)
T ss_pred EEecCCccchHHHHHHHHHHHHHHhCC-cH---HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 775 45688899999998854 44 355555544 778888889999999999987764
No 73
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.86 E-value=7.9e-21 Score=192.17 Aligned_cols=169 Identities=20% Similarity=0.329 Sum_probs=148.3
Q ss_pred HHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHH
Q 001292 398 KYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASR 477 (1106)
Q Consensus 398 ~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaek 477 (1106)
++..+...+...++++|+++|++.+ .|+++.+++|+..+..+. .++++ ++|+|.++. ...++.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~il~~g~~~~----~K~~~~li~a~~~l~~~~------~~~~~-l~i~G~~~~--~~~~~~~~~~ 68 (172)
T PF00534_consen 2 KDKLREKLKIPDKKKIILFIGRLDP----EKGIDLLIEAFKKLKEKK------NPNYK-LVIVGDGEY--KKELKNLIEK 68 (172)
T ss_dssp HHHHHHHTTT-TTSEEEEEESESSG----GGTHHHHHHHHHHHHHHH------HTTEE-EEEESHCCH--HHHHHHHHHH
T ss_pred hHHHHHHcCCCCCCeEEEEEecCcc----ccCHHHHHHHHHHHHhhc------CCCeE-EEEEccccc--cccccccccc
Confidence 4667888889899999999999888 899999999998887531 16776 789997774 4889999999
Q ss_pred cCCCCCcEEEcCChh--hHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCH
Q 001292 478 LGLLEHSVRHYGFNG--DVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNP 555 (1106)
Q Consensus 478 lGL~d~rV~flG~~e--DL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~ 555 (1106)
+++.+ +|.++|... ++..+|..||++|+||..| +||++++|||++|+|||+++.++..+++.++.+|+++++.|+
T Consensus 69 ~~~~~-~i~~~~~~~~~~l~~~~~~~di~v~~s~~e--~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~~~~g~~~~~~~~ 145 (172)
T PF00534_consen 69 LNLKE-NIIFLGYVPDDELDELYKSSDIFVSPSRNE--GFGLSLLEAMACGCPVIASDIGGNNEIINDGVNGFLFDPNDI 145 (172)
T ss_dssp TTCGT-TEEEEESHSHHHHHHHHHHTSEEEE-BSSB--SS-HHHHHHHHTT-EEEEESSTHHHHHSGTTTSEEEESTTSH
T ss_pred ccccc-cccccccccccccccccccceecccccccc--ccccccccccccccceeeccccCCceeeccccceEEeCCCCH
Confidence 99987 999999775 9999999999999999986 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Q 001292 556 EGLSRAFSLFISNGKLSKFARTVASAGRLH 585 (1106)
Q Consensus 556 eeLAeAI~~LLsDpelRk~r~~mGe~Are~ 585 (1106)
++++++|.++++++++ ++.|+++++++
T Consensus 146 ~~l~~~i~~~l~~~~~---~~~l~~~~~~~ 172 (172)
T PF00534_consen 146 EELADAIEKLLNDPEL---RQKLGKNARER 172 (172)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHH---HHHHHHHhcCC
Confidence 9999999999999987 68899999874
No 74
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.84 E-value=6.4e-20 Score=216.65 Aligned_cols=285 Identities=11% Similarity=0.029 Sum_probs=193.1
Q ss_pred CccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecCC
Q 001292 283 QYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDY 362 (1106)
Q Consensus 283 ~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~ 362 (1106)
..|+|++|.|...++..+..+.. ...|+++..|-.--+.. .+...+..+.+ ...+-.+|.|.+++.
T Consensus 131 ~~d~iwihDyhl~llp~~lr~~~---------~~~~i~~f~HipfP~~e-~~~~lp~~~~l----l~~~l~~D~igF~t~ 196 (460)
T cd03788 131 PGDLVWVHDYHLLLLPQMLRERG---------PDARIGFFLHIPFPSSE-IFRCLPWREEL----LRGLLGADLIGFQTE 196 (460)
T ss_pred CCCEEEEeChhhhHHHHHHHhhC---------CCCeEEEEEeCCCCChH-HHhhCCChHHH----HHHHhcCCEEEECCH
Confidence 45799999998888777765432 46789998886311100 01111000111 122446788887774
Q ss_pred Chhhh-------hcC------------CCCCCEEEeCCCCCCcccccccCcchh----HHHHHHHcCCCCCcEEEEEEcc
Q 001292 363 TLPML-------YSV------------LDAGNFFVIPGSPADVWAVEAYSKSHE----KYQLRKENGFLKDEIVVVVVGS 419 (1106)
Q Consensus 363 ~~~~~-------~~g------------i~~~KI~VIpN~GVDl~~~e~F~ps~s----~~~LR~~lGL~~d~~VIL~VGR 419 (1106)
..... ..+ -...++.++|+ |||. +.|.+... ....++..+..+++++|+++||
T Consensus 197 ~~~~~Fl~~~~~~l~~~~~~~~~i~~~g~~~~i~vip~-GID~---~~f~~~~~~~~~~~~~~~~~~~~~~~~~il~vgR 272 (460)
T cd03788 197 RYARNFLSCCSRLLGLEVTDDGGVEYGGRRVRVGAFPI-GIDP---DAFRKLAASPEVQERAAELRERLGGRKLIVGVDR 272 (460)
T ss_pred HHHHHHHHHHHHHcCCcccCCceEEECCEEEEEEEEeC-eEcH---HHHHHHhcCchhHHHHHHHHHhcCCCEEEEEecC
Confidence 43322 001 11235788897 8998 56654311 1223333455668889999999
Q ss_pred cCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcC-----CCC--ccHHHHHHHHHHcCCCC-----CcEE-
Q 001292 420 SFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGN-----STD--GYNDALQEVASRLGLLE-----HSVR- 486 (1106)
Q Consensus 420 l~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~-----Gpe--rY~eeLkeLaeklGL~d-----~rV~- 486 (1106)
+.+ .||++.+++|++.++++++.. ..+++ |+++|. +++ .+.+++++++.+++... ..|+
T Consensus 273 l~~----~Kgi~~ll~A~~~ll~~~p~~---~~~v~-Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~ 344 (460)
T cd03788 273 LDY----SKGIPERLLAFERLLERYPEW---RGKVV-LVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRY 344 (460)
T ss_pred ccc----cCCHHHHHHHHHHHHHhChhh---cCCEE-EEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEE
Confidence 998 999999999999887544211 11355 455543 232 13345555555443210 1354
Q ss_pred EcC--ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCC----EEecCCCCchhhhccCCeEEEEcCCCHHHHHH
Q 001292 487 HYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIP----VITPDFPIIKEYVAEGAQVIFFQKDNPEGLSR 560 (1106)
Q Consensus 487 flG--~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~P----VIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAe 560 (1106)
+.| +.+++..+|+.||++++||..| |||++++||||||+| ||+++.+|..+. +.+|+++++.|++++++
T Consensus 345 ~~g~v~~~el~~~y~~aDv~v~pS~~E--g~~lv~lEAma~g~p~~g~vV~S~~~G~~~~---~~~g~lv~p~d~~~la~ 419 (460)
T cd03788 345 LYRSLPREELAALYRAADVALVTPLRD--GMNLVAKEYVACQDDDPGVLILSEFAGAAEE---LSGALLVNPYDIDEVAD 419 (460)
T ss_pred EeCCCCHHHHHHHHHhccEEEeCcccc--ccCcccceeEEEecCCCceEEEeccccchhh---cCCCEEECCCCHHHHHH
Confidence 445 5689999999999999999987 999999999999999 999999998887 36899999999999999
Q ss_pred HHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHH
Q 001292 561 AFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYAR 600 (1106)
Q Consensus 561 AI~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~e 600 (1106)
+|.++++++.. .++.++.++++.+.++.+...++.|..
T Consensus 420 ai~~~l~~~~~--e~~~~~~~~~~~v~~~~~~~w~~~~l~ 457 (460)
T cd03788 420 AIHRALTMPLE--ERRERHRKLREYVRTHDVQAWANSFLD 457 (460)
T ss_pred HHHHHHcCCHH--HHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999998753 267888999999988777777777654
No 75
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.84 E-value=4.2e-19 Score=209.51 Aligned_cols=281 Identities=11% Similarity=0.067 Sum_probs=193.6
Q ss_pred cEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecCCCh
Q 001292 285 SLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTL 364 (1106)
Q Consensus 285 DiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~~~ 364 (1106)
|+|.+|.|...++..+..+.. ...++.+..|-- +...-.+...+.-+. ....+-.+|.|.+++...
T Consensus 129 d~vwvhDYhl~l~p~~lr~~~---------~~~~igfFlHip-fP~~e~f~~lp~r~~----il~gll~~dligF~t~~~ 194 (456)
T TIGR02400 129 DIVWVHDYHLMLLPAMLRELG---------VQNKIGFFLHIP-FPSSEIYRTLPWRRE----LLEGLLAYDLVGFQTYDD 194 (456)
T ss_pred CEEEEecchhhHHHHHHHhhC---------CCCeEEEEEeCC-CCChHHHhhCCcHHH----HHHHHhcCCEEEECCHHH
Confidence 588889999988888877543 456777777752 111111101100111 223456899999988665
Q ss_pred hhh-------hcCC-----------CCCCEEEeCCCCCCcccccccCcch-------hHHHHHHHcCCCCCcEEEEEEcc
Q 001292 365 PML-------YSVL-----------DAGNFFVIPGSPADVWAVEAYSKSH-------EKYQLRKENGFLKDEIVVVVVGS 419 (1106)
Q Consensus 365 ~~~-------~~gi-----------~~~KI~VIpN~GVDl~~~e~F~ps~-------s~~~LR~~lGL~~d~~VIL~VGR 419 (1106)
... ..+. ...++.++|+ |||+ +.|.+.. ....+|+.++ ++++|+++||
T Consensus 195 ~~~Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~-GID~---~~f~~~~~~~~~~~~~~~lr~~~~---~~~vIl~VgR 267 (456)
T TIGR02400 195 ARNFLSAVSRELGLETLPNGVESGGRTVRVGAFPI-GIDV---DRFAEQAKKPSVQKRIAELRESLK---GRKLIIGVDR 267 (456)
T ss_pred HHHHHHHHHHHhCCcccCCceEECCcEEEEEEecC-cCCH---HHHHHHhcChhHHHHHHHHHHHcC---CCeEEEEccc
Confidence 433 1111 2335778897 8998 6665421 1224566653 6789999999
Q ss_pred cCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEE----cCCCCccHHHHHHHHHHc--------CCCC-CcEE
Q 001292 420 SFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLC----GNSTDGYNDALQEVASRL--------GLLE-HSVR 486 (1106)
Q Consensus 420 l~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIV----G~GperY~eeLkeLaekl--------GL~d-~rV~ 486 (1106)
+.. .||+..+++|++.++++++.. ..++.+++++ |++++ ...+++.++++ +..+ .-|+
T Consensus 268 Ld~----~KGi~~ll~A~~~ll~~~p~~---~~~v~Lv~v~~p~rg~~~~--~~~l~~~i~~lv~~in~~~~~~~~~pv~ 338 (456)
T TIGR02400 268 LDY----SKGLPERLLAFERFLEEHPEW---RGKVVLVQIAVPSRGDVPE--YQQLRRQVEELVGRINGRFGTLDWTPIR 338 (456)
T ss_pred ccc----ccCHHHHHHHHHHHHHhCccc---cCceEEEEEecCCccCchH--HHHHHHHHHHHHHHHHhccCCCCCccEE
Confidence 988 899999999999887644211 1235544444 23343 25555555443 1111 0144
Q ss_pred Ec-C--ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCC----EEecCCCCchhhhccCCeEEEEcCCCHHHHH
Q 001292 487 HY-G--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIP----VITPDFPIIKEYVAEGAQVIFFQKDNPEGLS 559 (1106)
Q Consensus 487 fl-G--~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~P----VIASD~gGI~EiV~Dg~nG~LV~~~D~eeLA 559 (1106)
+. | ..+++..+|++||++++||..| |||++++||||||+| ||+|+++|..+.+. +|+++++.|++++|
T Consensus 339 ~l~~~~~~~el~aly~aaDv~vv~S~~E--G~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~l~---~gllVnP~d~~~lA 413 (456)
T TIGR02400 339 YLNRSYDREELMALYRAADVGLVTPLRD--GMNLVAKEYVAAQDPKDGVLILSEFAGAAQELN---GALLVNPYDIDGMA 413 (456)
T ss_pred EEcCCCCHHHHHHHHHhCcEEEECcccc--ccCccHHHHHHhcCCCCceEEEeCCCCChHHhC---CcEEECCCCHHHHH
Confidence 44 4 4589999999999999999987 999999999999999 99999999999883 79999999999999
Q ss_pred HHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 001292 560 RAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARIL 602 (1106)
Q Consensus 560 eAI~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLy 602 (1106)
++|.++++++.. ++++..+++++.+.++.+...++.|..-+
T Consensus 414 ~aI~~aL~~~~~--er~~r~~~~~~~v~~~~~~~W~~~~l~~l 454 (456)
T TIGR02400 414 DAIARALTMPLE--EREERHRAMMDKLRKNDVQRWREDFLSDL 454 (456)
T ss_pred HHHHHHHcCCHH--HHHHHHHHHHHHHhhCCHHHHHHHHHHHh
Confidence 999999997653 36778888899988877777777776544
No 76
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.83 E-value=3e-18 Score=198.05 Aligned_cols=324 Identities=14% Similarity=0.168 Sum_probs=216.4
Q ss_pred CCCEEEEEeCCCCCChhHHHHHHHHHHHHHCC---CEEEEEEcC--CCC-ch---------------HHHH---------
Q 001292 221 RPPRIGLILGNMAKDSRSLLLITVVKNLQKLG---YVFKIYAVR--SGN-SH---------------SLWE--------- 270 (1106)
Q Consensus 221 r~~RIalVlg~L~~gGesl~vv~LakaLqe~G---yeVtV~t~~--dg~-~~---------------~i~r--------- 270 (1106)
+.+||++++.+.+ +|-..++..|.++|++.| .+|.++-.- .++ .. .+|.
T Consensus 4 ~~~~vlil~~~~G-~GH~~aA~al~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~Y~~~~~~~p~~y~~~y~~~~~~ 82 (391)
T PRK13608 4 QNKKILIITGSFG-NGHMQVTQSIVNQLNDMNLDHLSVIEHDLFMEAHPILTSICKKWYINSFKYFRNMYKGFYYSRPDK 82 (391)
T ss_pred CCceEEEEECCCC-chHHHHHHHHHHHHHhhCCCCceEEEeehHHhcCchHHHHHHHHHHHHHHHhHHHHHHHHHcCchh
Confidence 3468999998874 455677888999999885 456655431 111 11 1111
Q ss_pred ---------HHhHHHHHhhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHH
Q 001292 271 ---------QIAGQISILGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQ 341 (1106)
Q Consensus 271 ---------~lg~lvkiIr~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gle 341 (1106)
....+.++++..+||+|++..+... +..+.... ..++|++..+++.... .
T Consensus 83 ~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~p~~~-~~~l~~~~---------~~~iP~~~v~td~~~~-----------~ 141 (391)
T PRK13608 83 LDKCFYKYYGLNKLINLLIKEKPDLILLTFPTPV-MSVLTEQF---------NINIPVATVMTDYRLH-----------K 141 (391)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCcCEEEECCcHHH-HHHHHHhc---------CCCCCEEEEeCCCCcc-----------c
Confidence 0012456777789999998655432 22222211 2578987654443111 1
Q ss_pred hHHHHHHHHhccccEEEecCCChhhh--hcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEE-EEEc
Q 001292 342 NLLSYWKSVFSRVNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVV-VVVG 418 (1106)
Q Consensus 342 klis~~~~~l~~AD~VIa~S~~~~~~--~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VI-L~VG 418 (1106)
. | ..+.+|.+++.+...... ..+++++++.++++ +++. .|.........+.+++++++.+++ +++|
T Consensus 142 ~----w--~~~~~d~~~v~s~~~~~~l~~~gi~~~ki~v~Gi-Pv~~----~f~~~~~~~~~~~~~~l~~~~~~ilv~~G 210 (391)
T PRK13608 142 N----W--ITPYSTRYYVATKETKQDFIDVGIDPSTVKVTGI-PIDN----KFETPIDQKQWLIDNNLDPDKQTILMSAG 210 (391)
T ss_pred c----c--ccCCCCEEEECCHHHHHHHHHcCCCHHHEEEECe-ecCh----HhcccccHHHHHHHcCCCCCCCEEEEECC
Confidence 1 1 135788888888665444 45778888988775 6764 454333345677889998766554 5677
Q ss_pred ccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHH
Q 001292 419 SSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVL 498 (1106)
Q Consensus 419 Rl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Ly 498 (1106)
++.. .|+++.+++++.. ..+++++++++|.++. ..+++.+..+..+ +|++.|+.+++.++|
T Consensus 211 ~lg~----~k~~~~li~~~~~----------~~~~~~~vvv~G~~~~----l~~~l~~~~~~~~-~v~~~G~~~~~~~~~ 271 (391)
T PRK13608 211 AFGV----SKGFDTMITDILA----------KSANAQVVMICGKSKE----LKRSLTAKFKSNE-NVLILGYTKHMNEWM 271 (391)
T ss_pred Cccc----chhHHHHHHHHHh----------cCCCceEEEEcCCCHH----HHHHHHHHhccCC-CeEEEeccchHHHHH
Confidence 6654 5788888887521 1156776667776542 1233333344444 799999999999999
Q ss_pred HHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecC-CCC----chhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHH
Q 001292 499 LMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPD-FPI----IKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSK 573 (1106)
Q Consensus 499 aaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD-~gG----I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk 573 (1106)
+.||++|.. ++|++++||||+|+|+|+++ .++ ...++.+...|++ +.|+++++++|.++++|++.
T Consensus 272 ~~aDl~I~k------~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~--~~~~~~l~~~i~~ll~~~~~-- 341 (391)
T PRK13608 272 ASSQLMITK------PGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGKI--ADTPEEAIKIVASLTNGNEQ-- 341 (391)
T ss_pred HhhhEEEeC------CchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEEE--eCCHHHHHHHHHHHhcCHHH--
Confidence 999999952 56899999999999999986 333 2344545555654 46899999999999999987
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhc
Q 001292 574 FARTVASAGRLHAKNMLALDCVTRYARILENVLN 607 (1106)
Q Consensus 574 ~r~~mGe~Are~ake~fsee~v~~Y~eLyeslLk 607 (1106)
+.+|++++++..+.+.+...++.+.++++.+..
T Consensus 342 -~~~m~~~~~~~~~~~s~~~i~~~l~~l~~~~~~ 374 (391)
T PRK13608 342 -LTNMISTMEQDKIKYATQTICRDLLDLIGHSSQ 374 (391)
T ss_pred -HHHHHHHHHHhcCCCCHHHHHHHHHHHhhhhhh
Confidence 689999999998887778888888888876543
No 77
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.83 E-value=8.9e-19 Score=201.46 Aligned_cols=277 Identities=16% Similarity=0.152 Sum_probs=186.2
Q ss_pred HHHHhhccCccEEEEcccc-HHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhcc
Q 001292 275 QISILGQEQYSLIDWSIFD-GIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSR 353 (1106)
Q Consensus 275 lvkiIr~~~pDiIh~~~~~-~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~ 353 (1106)
+.++++..+||+|+++.+. ..+...+..+.. .....++|++.++++..... .. ...+.
T Consensus 92 l~~~i~~~~pDvIi~thp~~~~~~~~~l~~~~-----~~~~~~~p~~~~~tD~~~~~----------~~------w~~~~ 150 (382)
T PLN02605 92 VAKGLMKYKPDIIVSVHPLMQHVPLRVLRWQG-----KELGKKIPFTTVVTDLGTCH----------PT------WFHKG 150 (382)
T ss_pred HHHHHHhcCcCEEEEeCcCcccCHHHHHHHHh-----hccCCCCCEEEEECCCCCcC----------cc------cccCC
Confidence 4567788899999884422 111111111110 00025789887766541010 00 11468
Q ss_pred ccEEEecCCChhhh--hcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHH
Q 001292 354 VNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYA 431 (1106)
Q Consensus 354 AD~VIa~S~~~~~~--~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~d 431 (1106)
+|.+++++...... ..+++++++.++++ +++. +.+.+...+..+|+++|++++.++|+++|+... .|+..
T Consensus 151 ~d~~~~~s~~~~~~l~~~g~~~~ki~v~g~-~v~~---~f~~~~~~~~~~r~~~gl~~~~~~il~~Gg~~g----~~~~~ 222 (382)
T PLN02605 151 VTRCFCPSEEVAKRALKRGLEPSQIRVYGL-PIRP---SFARAVRPKDELRRELGMDEDLPAVLLMGGGEG----MGPLE 222 (382)
T ss_pred CCEEEECCHHHHHHHHHcCCCHHHEEEECc-ccCH---hhccCCCCHHHHHHHcCCCCCCcEEEEECCCcc----cccHH
Confidence 89999988665443 45788889999875 7875 222223345678999999999999999997554 78888
Q ss_pred HHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCC
Q 001292 432 VAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQV 511 (1106)
Q Consensus 432 lLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~E 511 (1106)
.+++++..+... .....+++++++++|+++.. .+.+++. .... +|+++|+.+++.++|++||++|.+
T Consensus 223 ~li~~l~~~~~~---~~~~~~~~~~~vi~G~~~~~-~~~L~~~----~~~~-~v~~~G~~~~~~~l~~aaDv~V~~---- 289 (382)
T PLN02605 223 ETARALGDSLYD---KNLGKPIGQVVVICGRNKKL-QSKLESR----DWKI-PVKVRGFVTNMEEWMGACDCIITK---- 289 (382)
T ss_pred HHHHHHHHhhcc---ccccCCCceEEEEECCCHHH-HHHHHhh----cccC-CeEEEeccccHHHHHHhCCEEEEC----
Confidence 888888654310 00112456667888977431 2444433 2233 799999999999999999999975
Q ss_pred CCCCcHHHHHHHHhCCCEEecCC------CCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Q 001292 512 EQGFPSLIVRAMTFGIPVITPDF------PIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISN-GKLSKFARTVASAGRL 584 (1106)
Q Consensus 512 eEGFGlvLLEAMA~G~PVIASD~------gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsD-pelRk~r~~mGe~Are 584 (1106)
++|.+++||||||+|||+++. ++. +.+.++..|+++ .|+++|+++|.++++| ++. +++|++++++
T Consensus 290 --~g~~ti~EAma~g~PvI~~~~~pgqe~gn~-~~i~~~g~g~~~--~~~~~la~~i~~ll~~~~~~---~~~m~~~~~~ 361 (382)
T PLN02605 290 --AGPGTIAEALIRGLPIILNGYIPGQEEGNV-PYVVDNGFGAFS--ESPKEIARIVAEWFGDKSDE---LEAMSENALK 361 (382)
T ss_pred --CCcchHHHHHHcCCCEEEecCCCccchhhH-HHHHhCCceeec--CCHHHHHHHHHHHHcCCHHH---HHHHHHHHHH
Confidence 347899999999999999984 444 444444566654 7999999999999998 765 6889999999
Q ss_pred HHHHhcHHHHHHHHHHH
Q 001292 585 HAKNMLALDCVTRYARI 601 (1106)
Q Consensus 585 ~ake~fsee~v~~Y~eL 601 (1106)
.+....+.+.++.+.++
T Consensus 362 ~~~~~a~~~i~~~l~~~ 378 (382)
T PLN02605 362 LARPEAVFDIVHDLHEL 378 (382)
T ss_pred hcCCchHHHHHHHHHHH
Confidence 88777766666554443
No 78
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.81 E-value=1.5e-17 Score=196.35 Aligned_cols=357 Identities=15% Similarity=0.150 Sum_probs=245.8
Q ss_pred CEEEEEeCCCCC----ChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHH-----------------------------
Q 001292 223 PRIGLILGNMAK----DSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLW----------------------------- 269 (1106)
Q Consensus 223 ~RIalVlg~L~~----gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~----------------------------- 269 (1106)
++|+++..++.+ ||..-.+-.|.++|+++|++|.|+.+........+
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g~~v~v~lP~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRGVDVRVLLPSYPKVQKEWRDLLKVVGKFGVLKGGRAQLFIVKEYGKD 80 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcCCeEEEEcCCchhhhhhhccccceeeEeeeeecccceEEEEEeeccc
Confidence 356666666544 89999999999999999999988865321100000
Q ss_pred --------------H--------------HHh----HHHHHhhc----cCccEEEEccccHHHHHHHHHHHhhhhcccCC
Q 001292 270 --------------E--------------QIA----GQISILGQ----EQYSLIDWSIFDGIIADSLEAKEAISSLMQEP 313 (1106)
Q Consensus 270 --------------r--------------~lg----~lvkiIr~----~~pDiIh~~~~~~i~v~~La~k~~idII~te~ 313 (1106)
. .+. ..+..+.. ..+|+||+|.+...++....+... ..
T Consensus 81 ~~v~~~lid~~~~f~r~~~~~~~~~d~~~Rf~~F~~a~~~~~~~~~~~~~pDIvH~hDWqt~L~~~~lk~~~------~~ 154 (487)
T COG0297 81 GGVDLYLIDNPALFKRPDSTLYGYYDNAERFAFFSLAAAELAPLGLISWLPDIVHAHDWQTGLLPAYLKQRY------RS 154 (487)
T ss_pred CCCcEEEecChhhcCccccccCCCCcHHHHHHHHHHHHHHHhhhcCCCCCCCEEEeecHHHHHHHHHHhhcc------cc
Confidence 0 000 01122211 369999999999999887777531 11
Q ss_pred CCCCcEEEEEcCCcccccch------------hhhhhhHH--hHHHHHHHHhccccEEEecCCChhhh-h---c------
Q 001292 314 FHSIPLVWIIQEDSLANRLP------------VYVERGFQ--NLLSYWKSVFSRVNVIVFPDYTLPML-Y---S------ 369 (1106)
Q Consensus 314 ~~gIPVI~tIHna~Ls~r~~------------~Y~~~gle--klis~~~~~l~~AD~VIa~S~~~~~~-~---~------ 369 (1106)
...+|.|+|+||........ .|...+++ ..+...+..+..+|.|.++|...... + .
T Consensus 155 ~~~i~tVfTIHNl~~qG~~~~~~~~~lgLp~~~~~~~~l~~~~~~~~lK~gi~~ad~vttVSptYa~Ei~t~~~g~gl~g 234 (487)
T COG0297 155 GYIIPTVFTIHNLAYQGLFRLQYLEELGLPFEAYASFGLEFYGQISFLKGGLYYADAVTTVSPTYAGEIYTPEYGEGLEG 234 (487)
T ss_pred cccCCeEEEEeeceeecccchhhHHHhcCCHHHhhhceeeecCcchhhhhhheeccEEEEECHHHHHhhccccccccchh
Confidence 25789999999932211111 00000000 11133345678999999988654433 1 0
Q ss_pred --CCCCCCEEEeCCCCCCcccccccCc------------------chhHHHHHHHcCCCC--CcEEEEEEcccCcccccc
Q 001292 370 --VLDAGNFFVIPGSPADVWAVEAYSK------------------SHEKYQLRKENGFLK--DEIVVVVVGSSFFYNELS 427 (1106)
Q Consensus 370 --gi~~~KI~VIpN~GVDl~~~e~F~p------------------s~s~~~LR~~lGL~~--d~~VIL~VGRl~~y~kg~ 427 (1106)
.....++.-|-| |+|. +...| ..++..+++.+|++. +.|++.++||+.. +
T Consensus 235 ~l~~~~~~l~GI~N-giD~---~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~gL~~~~~~pl~~~vsRl~~----Q 306 (487)
T COG0297 235 LLSWRSGKLSGILN-GIDY---DLWNPETDPYIAANYSAEVLPAKAENKVALQERLGLDVDLPGPLFGFVSRLTA----Q 306 (487)
T ss_pred hhhhccccEEEEEe-eEEe---cccCcccccchhccCCccchhhhHHHHHHHHHHhCCCCCCCCcEEEEeecccc----c
Confidence 011245666766 6764 22222 134567788899873 5689999999987 9
Q ss_pred CCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhh-HHHHHHHcCeEEE
Q 001292 428 WDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGD-VNGVLLMADIVLY 506 (1106)
Q Consensus 428 Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eD-L~~LyaaADVfV~ 506 (1106)
|+++++++++..++++ .++ +++.|.|+..+.+.+..+++.+... .....|+.+. ...+|+.||++++
T Consensus 307 KG~dl~~~~i~~~l~~---------~~~-~vilG~gd~~le~~~~~la~~~~~~--~~~~i~~~~~la~~i~agaD~~lm 374 (487)
T COG0297 307 KGLDLLLEAIDELLEQ---------GWQ-LVLLGTGDPELEEALRALASRHPGR--VLVVIGYDEPLAHLIYAGADVILM 374 (487)
T ss_pred cchhHHHHHHHHHHHh---------Cce-EEEEecCcHHHHHHHHHHHHhcCce--EEEEeeecHHHHHHHHhcCCEEEe
Confidence 9999999999888752 256 6889999666778888888866441 3444555544 5799999999999
Q ss_pred ccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhcc--------CCeEEEEcCCCHHHHHHHHHHHHh---CcccHHHH
Q 001292 507 GSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAE--------GAQVIFFQKDNPEGLSRAFSLFIS---NGKLSKFA 575 (1106)
Q Consensus 507 PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~D--------g~nG~LV~~~D~eeLAeAI~~LLs---DpelRk~r 575 (1106)
||.+| ++|++-++||.+|+++|+..+||.++.|.+ ..+|+++.+.|+++|+.+|.+.+. ++.. ..
T Consensus 375 PSrfE--PcGL~ql~amryGtvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f~~~~~~~l~~al~rA~~~y~~~~~--~w 450 (487)
T COG0297 375 PSRFE--PCGLTQLYAMRYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQTNPDHLANALRRALVLYRAPPL--LW 450 (487)
T ss_pred CCcCc--CCcHHHHHHHHcCCcceEcccCCccceecCccchhccCceeEEEEecCCHHHHHHHHHHHHHHhhCCHH--HH
Confidence 99997 999999999999999999999999999886 469999998999999999998765 3332 02
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCCC
Q 001292 576 RTVASAGRLHAKNMLALDCVTRYARILENVLNFPSD 611 (1106)
Q Consensus 576 ~~mGe~Are~ake~fsee~v~~Y~eLyeslLk~Ps~ 611 (1106)
+.+..++.. .+++|+..+..|.++|+.++..+-.
T Consensus 451 ~~~~~~~m~--~d~sw~~sa~~y~~lY~~~~~~~~~ 484 (487)
T COG0297 451 RKVQPNAMG--ADFSWDLSAKEYVELYKPLLSKPFW 484 (487)
T ss_pred HHHHHhhcc--cccCchhHHHHHHHHHHHHhccccc
Confidence 344444444 4778889999999999999886543
No 79
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.77 E-value=1.3e-16 Score=181.96 Aligned_cols=326 Identities=15% Similarity=0.123 Sum_probs=198.9
Q ss_pred CEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCch----------------HH----------HHHHhHHH
Q 001292 223 PRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSH----------------SL----------WEQIAGQI 276 (1106)
Q Consensus 223 ~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~----------------~i----------~r~lg~lv 276 (1106)
+||+++.|. .|.-++...+++.|++.++++.+++....... .. ...+..+.
T Consensus 2 ~ki~i~~Gg---t~G~i~~a~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 78 (380)
T PRK00025 2 LRIAIVAGE---VSGDLLGAGLIRALKARAPNLEFVGVGGPRMQAAGCESLFDMEELAVMGLVEVLPRLPRLLKIRRRLK 78 (380)
T ss_pred ceEEEEecC---cCHHHHHHHHHHHHHhcCCCcEEEEEccHHHHhCCCccccCHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence 466666544 23344444599999998888888875431110 11 11222356
Q ss_pred HHhhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccE
Q 001292 277 SILGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNV 356 (1106)
Q Consensus 277 kiIr~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~ 356 (1106)
++++..+||+++.+.+...... +..... ..++|+++..++.... +. ... .....+.+|.
T Consensus 79 ~~l~~~kPdivi~~~~~~~~~~-~a~~a~--------~~~ip~i~~~~~~~~~-~~--------~~~---~~~~~~~~d~ 137 (380)
T PRK00025 79 RRLLAEPPDVFIGIDAPDFNLR-LEKKLR--------KAGIPTIHYVSPSVWA-WR--------QGR---AFKIAKATDH 137 (380)
T ss_pred HHHHHcCCCEEEEeCCCCCCHH-HHHHHH--------HCCCCEEEEeCCchhh-cC--------chH---HHHHHHHHhh
Confidence 7788899999998765332221 111111 2579999876653211 00 111 1123456788
Q ss_pred EEecCCChhhhhcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEE-cccCccccccCCHHHHHH
Q 001292 357 IVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVV-GSSFFYNELSWDYAVAMH 435 (1106)
Q Consensus 357 VIa~S~~~~~~~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~V-GRl~~y~kg~Kg~dlLLe 435 (1106)
+++.+......+.... .++.+++| ++.. .......+..++.+++++++.++++.+ |+... +..+....+++
T Consensus 138 i~~~~~~~~~~~~~~g-~~~~~~G~-p~~~----~~~~~~~~~~~~~~l~~~~~~~~il~~~gsr~~--~~~~~~~~l~~ 209 (380)
T PRK00025 138 VLALFPFEAAFYDKLG-VPVTFVGH-PLAD----AIPLLPDRAAARARLGLDPDARVLALLPGSRGQ--EIKRLLPPFLK 209 (380)
T ss_pred heeCCccCHHHHHhcC-CCeEEECc-CHHH----hcccccChHHHHHHcCCCCCCCEEEEECCCCHH--HHHHHHHHHHH
Confidence 8888876555432221 23667666 3321 111112245678889998777765544 42211 10123567777
Q ss_pred HHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHc-CCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCC
Q 001292 436 DVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRL-GLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQG 514 (1106)
Q Consensus 436 A~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaekl-GL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEG 514 (1106)
++..+.++ .|+++ ++++|.++. +.+.++++++++ ++. |.+.+ +++..+|+.||++|++|
T Consensus 210 a~~~l~~~-------~~~~~-~ii~~~~~~-~~~~~~~~~~~~~~~~---v~~~~--~~~~~~~~~aDl~v~~s------ 269 (380)
T PRK00025 210 AAQLLQQR-------YPDLR-FVLPLVNPK-RREQIEEALAEYAGLE---VTLLD--GQKREAMAAADAALAAS------ 269 (380)
T ss_pred HHHHHHHh-------CCCeE-EEEecCChh-hHHHHHHHHhhcCCCC---eEEEc--ccHHHHHHhCCEEEECc------
Confidence 77666532 26777 456655333 247788888766 553 55543 58999999999999986
Q ss_pred CcHHHHHHHHhCCCEEec-----------------CCCCchhhhccCC--eEEEEcCCCHHHHHHHHHHHHhCcccHHHH
Q 001292 515 FPSLIVRAMTFGIPVITP-----------------DFPIIKEYVAEGA--QVIFFQKDNPEGLSRAFSLFISNGKLSKFA 575 (1106)
Q Consensus 515 FGlvLLEAMA~G~PVIAS-----------------D~gGI~EiV~Dg~--nG~LV~~~D~eeLAeAI~~LLsDpelRk~r 575 (1106)
|.+.+|||++|+|||++ +.+++++++.++. .+++.+..|+++|+++|.++++|+++ +
T Consensus 270 -G~~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~---~ 345 (380)
T PRK00025 270 -GTVTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLADGAR---R 345 (380)
T ss_pred -cHHHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcCHHH---H
Confidence 67888999999999987 4566677776653 45666778999999999999999998 5
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 001292 576 RTVASAGRLHAKNMLALDCVTRYARILENV 605 (1106)
Q Consensus 576 ~~mGe~Are~ake~fsee~v~~Y~eLyesl 605 (1106)
++|++++.+..+.. ......+..+++.++
T Consensus 346 ~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~ 374 (380)
T PRK00025 346 QALLEGFTELHQQL-RCGADERAAQAVLEL 374 (380)
T ss_pred HHHHHHHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 78888876655543 333444555554443
No 80
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.76 E-value=1e-16 Score=164.75 Aligned_cols=223 Identities=20% Similarity=0.189 Sum_probs=158.1
Q ss_pred EEEeCCCC--CChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHHHHHhHHHHHhhccCccEEEEccccHHHHHHHHHH
Q 001292 226 GLILGNMA--KDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLWEQIAGQISILGQEQYSLIDWSIFDGIIADSLEAK 303 (1106)
Q Consensus 226 alVlg~L~--~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r~lg~lvkiIr~~~pDiIh~~~~~~i~v~~La~k 303 (1106)
+++..... .+|.......+++.|.+.|++|++++ .. .......++..++|+|+.+.............
T Consensus 2 ~~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~v~~----~~------~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~ 71 (229)
T cd01635 2 LLVSTPLLPGGGGVELVLLDLAKALARRGHEVEVVA----LL------LLLLLRILRGFKPDVVHAHGYYPAPLALLLAA 71 (229)
T ss_pred eeeccccCCCCCCchhHHHHHHHHHHHcCCeEEEEE----ec------hHHHHHHHhhcCCCEEEEcCCCcHHHHHHHHH
Confidence 44444444 57889999999999999999999998 11 11123455567999999988776555431211
Q ss_pred HhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecCCChhhhhcCCCCCCEEEeCCCC
Q 001292 304 EAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPMLYSVLDAGNFFVIPGSP 383 (1106)
Q Consensus 304 ~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~~~~~~~~gi~~~KI~VIpN~G 383 (1106)
. ..++|++++.|+......... . .+ .....+..+
T Consensus 72 ~---------~~~~~~i~~~h~~~~~~~~~~--~---~~---~~~~~~~~~----------------------------- 105 (229)
T cd01635 72 R---------LLGIPLVLTVHGVNRSLLEGV--P---LS---LLALSIGLA----------------------------- 105 (229)
T ss_pred h---------hCCCCEEEEEcCccHhhcccC--c---HH---HHHHHHhhc-----------------------------
Confidence 1 267899999999621110000 0 00 000000000
Q ss_pred CCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCC
Q 001292 384 ADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNS 463 (1106)
Q Consensus 384 VDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~G 463 (1106)
...++|++.. .|+.+.+++++..+.++. ++++ ++++|.+
T Consensus 106 -----------------------------~~~~~g~~~~----~k~~~~~~~a~~~l~~~~-------~~~~-~~i~G~~ 144 (229)
T cd01635 106 -----------------------------DKVFVGRLAP----EKGLDDLIEAFALLKERG-------PDLK-LVIAGDG 144 (229)
T ss_pred -----------------------------ceEEEEeecc----cCCHHHHHHHHHHHHHhC-------CCeE-EEEEeCC
Confidence 0118887776 789999999998876432 6788 5778887
Q ss_pred CCccHHHHHHHHHHcCCCCCcEEEcCC---hhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhh
Q 001292 464 TDGYNDALQEVASRLGLLEHSVRHYGF---NGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEY 540 (1106)
Q Consensus 464 perY~eeLkeLaeklGL~d~rV~flG~---~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~Ei 540 (1106)
... ...+..+.+.+..+ +|.+.|. .+++..+++.||++++||..| ++|++++|||++|+|||+++.++..|+
T Consensus 145 ~~~--~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e--~~~~~~~Eam~~g~pvi~s~~~~~~e~ 219 (229)
T cd01635 145 PER--EYLEELLAALLLLD-RVIFLGGLDPEELLALLLAAADVFVLPSLRE--GFGLVVLEAMACGLPVIATDVGGPPEI 219 (229)
T ss_pred CCh--HHHHHHHHhcCCcc-cEEEeCCCCcHHHHHHHhhcCCEEEeccccc--CcChHHHHHHhCCCCEEEcCCCCcceE
Confidence 764 56666567778776 9999996 356677777799999999987 999999999999999999999999999
Q ss_pred hccCCeEEEE
Q 001292 541 VAEGAQVIFF 550 (1106)
Q Consensus 541 V~Dg~nG~LV 550 (1106)
+.++.+|+++
T Consensus 220 i~~~~~g~~~ 229 (229)
T cd01635 220 VEDGLTGLLV 229 (229)
T ss_pred EECCCceEEC
Confidence 9898899864
No 81
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.76 E-value=4.8e-17 Score=190.08 Aligned_cols=238 Identities=18% Similarity=0.152 Sum_probs=169.7
Q ss_pred HhccccEEEecCCChhhh----hcCCCCCCEEEeCCCCCCcccccccCc-----c-hhHHHHHHHcCCCCCcEEEEEEcc
Q 001292 350 VFSRVNVIVFPDYTLPML----YSVLDAGNFFVIPGSPADVWAVEAYSK-----S-HEKYQLRKENGFLKDEIVVVVVGS 419 (1106)
Q Consensus 350 ~l~~AD~VIa~S~~~~~~----~~gi~~~KI~VIpN~GVDl~~~e~F~p-----s-~s~~~LR~~lGL~~d~~VIL~VGR 419 (1106)
....++.+++.++..... ...+...++.+++. .+|. +.+.+ . ......|...+....+..+..+-+
T Consensus 206 ~~~~~~~~~~ns~~~~~~f~~~~~~L~~~d~~~~y~-ei~~---s~~~~~~~~~~~~~~~~~r~~~~v~~~d~~~~siN~ 281 (495)
T KOG0853|consen 206 TTGLAWKILVNSYFTKRQFKATFVSLSNSDITSTYP-EIDG---SWFTYGQYESHLELRLPVRLYRGVSGIDRFFPSINR 281 (495)
T ss_pred hhhccceEecchhhhhhhhhhhhhhcCCCCcceeec-cccc---hhccccccccchhcccccceeeeecccceEeeeeee
Confidence 355777888777655443 22334444555553 4665 33322 1 122333455566666777787877
Q ss_pred cCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCC--------CCccHHHHHHHHHHcCCCCCcEEEcCCh
Q 001292 420 SFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNS--------TDGYNDALQEVASRLGLLEHSVRHYGFN 491 (1106)
Q Consensus 420 l~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~G--------perY~eeLkeLaeklGL~d~rV~flG~~ 491 (1106)
+.+ .|++.++++++..+...... ..-++.+ ++++|+. .-.|..++.++++++++....|.|+..+
T Consensus 282 ~~p----gkd~~l~l~a~~~~~~~i~~--~~~~~~h-l~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~~v~~~~s~ 354 (495)
T KOG0853|consen 282 FEP----GKDQDLALPAFTLLHDSIPE--PSISSEH-LVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQFVWFLPST 354 (495)
T ss_pred cCC----CCCceeehhhHHhhhcccCC--CCCCceE-EEEecCCCccccchhhHHHHHHHHHHHHHhCccCceEEEecCC
Confidence 777 78999999999877654422 1224556 5666621 1127889999999999953388888876
Q ss_pred hhHHHHHHHcC--eEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHH---HHHHHHHHHH
Q 001292 492 GDVNGVLLMAD--IVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPE---GLSRAFSLFI 566 (1106)
Q Consensus 492 eDL~~LyaaAD--VfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~e---eLAeAI~~LL 566 (1106)
.+...|..++| ++++....| .||++++||||||+|||++|.||..|+|.++.+|+++++ +.+ .+|++|.++.
T Consensus 355 ~~~~~yrl~adt~~v~~qPa~E--~FGiv~IEAMa~glPvvAt~~GGP~EiV~~~~tG~l~dp-~~e~~~~~a~~~~kl~ 431 (495)
T KOG0853|consen 355 TRVAKYRLAADTKGVLYQPANE--HFGIVPIEAMACGLPVVATNNGGPAEIVVHGVTGLLIDP-GQEAVAELADALLKLR 431 (495)
T ss_pred chHHHHHHHHhcceEEecCCCC--CccceeHHHHhcCCCEEEecCCCceEEEEcCCcceeeCC-chHHHHHHHHHHHHHh
Confidence 66665655555 444444445 999999999999999999999999999999999999998 555 6999999999
Q ss_pred hCcccHHHHHHHHHHHHHHHHHhcHHHHHH-HHHHHHHH
Q 001292 567 SNGKLSKFARTVASAGRLHAKNMLALDCVT-RYARILEN 604 (1106)
Q Consensus 567 sDpelRk~r~~mGe~Are~ake~fsee~v~-~Y~eLyes 604 (1106)
.||++ ..+|+++|++.+++.|++.... +..+++..
T Consensus 432 ~~p~l---~~~~~~~G~~rV~e~fs~~~~~~ri~~~~~~ 467 (495)
T KOG0853|consen 432 RDPEL---WARMGKNGLKRVKEMFSWQHYSERIASVLGK 467 (495)
T ss_pred cCHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHhHh
Confidence 99999 5899999999999977764443 66655553
No 82
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.74 E-value=9.4e-16 Score=175.84 Aligned_cols=245 Identities=14% Similarity=0.107 Sum_probs=158.7
Q ss_pred CCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecCCChhhhhcCCCCCCEEEeCCCCCCcccccccCc
Q 001292 315 HSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSK 394 (1106)
Q Consensus 315 ~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~~~~~~~~gi~~~KI~VIpN~GVDl~~~e~F~p 394 (1106)
.+.++||.+++.- ...... . ..........++.+|.|++.+........... .++.+||| |+|. +.|.+
T Consensus 121 ~~~~~Vyd~~D~~-~~~~~~-~----~~~~~~e~~~~~~ad~vi~~S~~l~~~~~~~~-~~i~~i~n-gvd~---~~f~~ 189 (373)
T cd04950 121 QASLVVYDCVDDL-SAFPGG-P----PELLEAERRLLKRADLVFTTSPSLYEAKRRLN-PNVVLVPN-GVDY---EHFAA 189 (373)
T ss_pred CCCeEEEEcccch-hccCCC-C----HHHHHHHHHHHHhCCEEEECCHHHHHHHhhCC-CCEEEccc-ccCH---HHhhc
Confidence 5678888877731 111110 0 11122334568899999999987776543333 68999998 7998 56654
Q ss_pred chhHH-HHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHH
Q 001292 395 SHEKY-QLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQE 473 (1106)
Q Consensus 395 s~s~~-~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLke 473 (1106)
..... ..+.. ...+.++++|+|++.. .++.+++.++.+ ..|+++ ++++|.++.. .....
T Consensus 190 ~~~~~~~~~~~--~~~~~~~i~y~G~l~~----~~d~~ll~~la~-----------~~p~~~-~vliG~~~~~--~~~~~ 249 (373)
T cd04950 190 ARDPPPPPADL--AALPRPVIGYYGAIAE----WLDLELLEALAK-----------ARPDWS-FVLIGPVDVS--IDPSA 249 (373)
T ss_pred ccccCCChhHH--hcCCCCEEEEEecccc----ccCHHHHHHHHH-----------HCCCCE-EEEECCCcCc--cChhH
Confidence 32111 01111 2236779999998876 456655443331 127888 6888887322 11211
Q ss_pred HHHHcCCCCCcEEEcCCh--hhHHHHHHHcCeEEEccCCC---CCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEE
Q 001292 474 VASRLGLLEHSVRHYGFN--GDVNGVLLMADIVLYGSSQV---EQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVI 548 (1106)
Q Consensus 474 LaeklGL~d~rV~flG~~--eDL~~LyaaADVfV~PS~~E---eEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~ 548 (1106)
+ ... + +|+++|.. +++..+|+.+|++++|+..+ ..++|++++||||||+|||+++.+++.+ ....++
T Consensus 250 ~---~~~-~-nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~~~~~---~~~~~~ 321 (373)
T cd04950 250 L---LRL-P-NVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLPEVRR---YEDEVV 321 (373)
T ss_pred h---ccC-C-CEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcHHHHh---hcCcEE
Confidence 1 123 3 89999965 79999999999999998532 1368999999999999999998765544 333344
Q ss_pred EEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 001292 549 FFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILEN 604 (1106)
Q Consensus 549 LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLyes 604 (1106)
+.++|+++++++|.+++.++... ... +++..++++.|+..++++...+.+
T Consensus 322 -~~~~d~~~~~~ai~~~l~~~~~~--~~~---~~~~~~~~~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 322 -LIADDPEEFVAAIEKALLEDGPA--RER---RRLRLAAQNSWDARAAEMLEALQE 371 (373)
T ss_pred -EeCCCHHHHHHHHHHHHhcCCch--HHH---HHHHHHHHCCHHHHHHHHHHHHHh
Confidence 44579999999999977655431 111 222378888899888888865553
No 83
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.74 E-value=1.3e-16 Score=199.44 Aligned_cols=286 Identities=10% Similarity=0.077 Sum_probs=195.3
Q ss_pred cEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecCCCh
Q 001292 285 SLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTL 364 (1106)
Q Consensus 285 DiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~~~ 364 (1106)
|+|-+|.|...++..+..+.. ..+++.+..|-- +...-.+...+.-+. ....+-.+|.|-+++...
T Consensus 149 d~vWvhDYhL~llp~~lR~~~---------~~~~igfFlHiP-FPs~e~fr~lp~r~~----il~gll~aDligF~t~~y 214 (797)
T PLN03063 149 DVVWCHDYHLMFLPQYLKEYN---------NKMKVGWFLHTP-FPSSEIYKTLPSRSE----LLRAVLTADLIGFHTYDF 214 (797)
T ss_pred CEEEEecchhhhHHHHHHHhC---------CCCcEEEEecCC-CCCHHHHhhCCCHHH----HHHHHhcCCEEEeCCHHH
Confidence 577779999888887777543 567788777773 110001100100011 123355788888877554
Q ss_pred hhh-------hcCC-----------CCCCEEEeCCCCCCcccccccCcch-------hHHHHHHHcCCCCCcEEEEEEcc
Q 001292 365 PML-------YSVL-----------DAGNFFVIPGSPADVWAVEAYSKSH-------EKYQLRKENGFLKDEIVVVVVGS 419 (1106)
Q Consensus 365 ~~~-------~~gi-----------~~~KI~VIpN~GVDl~~~e~F~ps~-------s~~~LR~~lGL~~d~~VIL~VGR 419 (1106)
... ..+. ...++.++|+ |||. +.|.+.. ....+++.++ ++++|+++||
T Consensus 215 ~r~Fl~~~~r~l~~~~~~~~i~~~gr~~~I~viP~-GID~---~~f~~~~~~~~~~~~~~~lr~~~~---~~~lIl~VgR 287 (797)
T PLN03063 215 ARHFLSACTRILGVEGTHEGVVDQGKVTRVAVFPI-GIDP---ERFINTCELPEVKQHMKELKRFFA---GRKVILGVDR 287 (797)
T ss_pred HHHHHHHHHHHhCccccCCceEECCeEEEEEEEec-ccCH---HHHHHHhcChhHHHHHHHHHHhcC---CCeEEEEecc
Confidence 433 0111 1135778897 8998 5554321 1123444443 6779999999
Q ss_pred cCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEc----CCCCccHHHHHHHHHHcC--CCC-------CcEE
Q 001292 420 SFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCG----NSTDGYNDALQEVASRLG--LLE-------HSVR 486 (1106)
Q Consensus 420 l~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG----~GperY~eeLkeLaeklG--L~d-------~rV~ 486 (1106)
+.. .||+..+|+|++.+++.++... .++.++.++| ++++ .+.+++.+++++ +.. .-|+
T Consensus 288 Ld~----~KGi~~lL~Afe~lL~~~P~~~---~kvvLvqia~psr~~~~~--y~~l~~~v~~l~g~In~~~g~~~~~pv~ 358 (797)
T PLN03063 288 LDM----IKGIPQKYLAFEKFLEENPEWR---DKVMLVQIAVPTRNDVPE--YQKLKSQVHELVGRINGRFGSVSSVPIH 358 (797)
T ss_pred ccc----ccCHHHHHHHHHHHHHhCcccc---CcEEEEEEecCCCCchHH--HHHHHHHHHHHHHHhhcccccCCCceeE
Confidence 988 8999999999999886542111 1233322332 2333 355666666553 221 1133
Q ss_pred EcC---ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCC----EEecCCCCchhhhccCCeEEEEcCCCHHHHH
Q 001292 487 HYG---FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIP----VITPDFPIIKEYVAEGAQVIFFQKDNPEGLS 559 (1106)
Q Consensus 487 flG---~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~P----VIASD~gGI~EiV~Dg~nG~LV~~~D~eeLA 559 (1106)
+++ +.+++..+|++||++|+||..| |||++++||||||+| +|+|+++|..+.+ +.+|++++|.|++++|
T Consensus 359 ~l~~~v~~~el~aly~~ADvfvvtSlrE--GmnLv~lEamA~g~p~~gvlVlSe~~G~~~~l--~~~allVnP~D~~~lA 434 (797)
T PLN03063 359 HLDCSVDFNYLCALYAITDVMLVTSLRD--GMNLVSYEFVACQKAKKGVLVLSEFAGAGQSL--GAGALLVNPWNITEVS 434 (797)
T ss_pred EecCCCCHHHHHHHHHhCCEEEeCcccc--ccCcchhhHheeecCCCCCEEeeCCcCchhhh--cCCeEEECCCCHHHHH
Confidence 333 4478999999999999999997 999999999999999 9999999999987 5679999999999999
Q ss_pred HHHHHHHhCc-ccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhc
Q 001292 560 RAFSLFISNG-KLSKFARTVASAGRLHAKNMLALDCVTRYARILENVLN 607 (1106)
Q Consensus 560 eAI~~LLsDp-elRk~r~~mGe~Are~ake~fsee~v~~Y~eLyeslLk 607 (1106)
++|.++++.+ +. +++..+++++.+.++.+...+..+.+.|+.+..
T Consensus 435 ~AI~~aL~m~~~e---r~~r~~~~~~~v~~~~~~~Wa~~fl~~l~~~~~ 480 (797)
T PLN03063 435 SAIKEALNMSDEE---RETRHRHNFQYVKTHSAQKWADDFMSELNDIIV 480 (797)
T ss_pred HHHHHHHhCCHHH---HHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhh
Confidence 9999999944 44 567788899999999999888888887776644
No 84
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.73 E-value=5.9e-16 Score=176.35 Aligned_cols=260 Identities=13% Similarity=0.079 Sum_probs=164.2
Q ss_pred HHHHhhccCccEEEEccc-cHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHh-c
Q 001292 275 QISILGQEQYSLIDWSIF-DGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVF-S 352 (1106)
Q Consensus 275 lvkiIr~~~pDiIh~~~~-~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l-~ 352 (1106)
+.++++..+||+||++.. ...+...+..+. .++|++.+-++..........+. ... +..+ +
T Consensus 78 l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~----------~~ipv~h~~~g~~s~~~~~~~~~-----~~~--r~~~~~ 140 (365)
T TIGR00236 78 LEELLLEEKPDIVLVQGDTTTTLAGALAAFY----------LQIPVGHVEAGLRTGDRYSPMPE-----EIN--RQLTGH 140 (365)
T ss_pred HHHHHHHcCCCEEEEeCCchHHHHHHHHHHH----------hCCCEEEEeCCCCcCCCCCCCcc-----HHH--HHHHHH
Confidence 667888899999999963 344555555542 68998755322211111100011 011 1111 2
Q ss_pred cccEEEecCCChhhh--hcCCCCCCEEEeCCCCCCcccccccCcc-hhHHHHHHHcCCCCCcEEEEEEcccCccccccCC
Q 001292 353 RVNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAVEAYSKS-HEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWD 429 (1106)
Q Consensus 353 ~AD~VIa~S~~~~~~--~~gi~~~KI~VIpN~GVDl~~~e~F~ps-~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg 429 (1106)
.+|.+++++....+. ..+++++++.+++|..+|. ...... .....++++++. +..++++.+.... ...|+
T Consensus 141 ~ad~~~~~s~~~~~~l~~~G~~~~~I~vign~~~d~---~~~~~~~~~~~~~~~~~~~--~~~~vl~~~hr~~--~~~k~ 213 (365)
T TIGR00236 141 IADLHFAPTEQAKDNLLRENVKADSIFVTGNTVIDA---LLTNVEIAYSSPVLSEFGE--DKRYILLTLHRRE--NVGEP 213 (365)
T ss_pred HHHhccCCCHHHHHHHHHcCCCcccEEEeCChHHHH---HHHHHhhccchhHHHhcCC--CCCEEEEecCchh--hhhhH
Confidence 478888888766554 4588888999999854564 111111 113445666663 3345555543221 11367
Q ss_pred HHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCCh--hhHHHHHHHcCeEEEc
Q 001292 430 YAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFN--GDVNGVLLMADIVLYG 507 (1106)
Q Consensus 430 ~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~--eDL~~LyaaADVfV~P 507 (1106)
...+++|+..+..+. |+++ ++++|.+.. .....+.+.++..+ +|+|+|+. .++..+|+.||+++.+
T Consensus 214 ~~~ll~a~~~l~~~~-------~~~~-~vi~~~~~~---~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~l~~ad~vv~~ 281 (365)
T TIGR00236 214 LENIFKAIREIVEEF-------EDVQ-IVYPVHLNP---VVREPLHKHLGDSK-RVHLIEPLEYLDFLNLAANSHLILTD 281 (365)
T ss_pred HHHHHHHHHHHHHHC-------CCCE-EEEECCCCh---HHHHHHHHHhCCCC-CEEEECCCChHHHHHHHHhCCEEEEC
Confidence 899999998776432 6776 444433221 12223444456655 89999955 4678999999999877
Q ss_pred cCCCCCCCcHHHHHHHHhCCCEEec-CCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHH
Q 001292 508 SSQVEQGFPSLIVRAMTFGIPVITP-DFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAG 582 (1106)
Q Consensus 508 S~~EeEGFGlvLLEAMA~G~PVIAS-D~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~A 582 (1106)
| |..++|||+||+|||++ +.++..+.+.++ .+++++ .|+++++++|.++++|++. +++|+.+.
T Consensus 282 S-------g~~~~EA~a~g~PvI~~~~~~~~~e~~~~g-~~~lv~-~d~~~i~~ai~~ll~~~~~---~~~~~~~~ 345 (365)
T TIGR00236 282 S-------GGVQEEAPSLGKPVLVLRDTTERPETVEAG-TNKLVG-TDKENITKAAKRLLTDPDE---YKKMSNAS 345 (365)
T ss_pred C-------hhHHHHHHHcCCCEEECCCCCCChHHHhcC-ceEEeC-CCHHHHHHHHHHHHhChHH---HHHhhhcC
Confidence 6 34579999999999996 778888888766 556664 7999999999999999886 46666554
No 85
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.67 E-value=1.2e-15 Score=189.80 Aligned_cols=285 Identities=9% Similarity=0.076 Sum_probs=186.6
Q ss_pred cEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecCCCh
Q 001292 285 SLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTL 364 (1106)
Q Consensus 285 DiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~~~ 364 (1106)
|+|-+|.|...++..+..+.. ...++-+..|-- +...-.+...+..+. ....+-.+|.|-+++...
T Consensus 135 d~vwvhDYhl~l~p~~lr~~~---------~~~~igfFlH~p-fP~~~~f~~lp~~~~----ll~~ll~~Dligf~t~~~ 200 (726)
T PRK14501 135 DVVWVHDYQLMLLPAMLRERL---------PDARIGFFLHIP-FPSFEVFRLLPWREE----ILEGLLGADLIGFHTYDY 200 (726)
T ss_pred CEEEEeCchhhhHHHHHHhhC---------CCCcEEEEeeCC-CCChHHHhhCCChHH----HHHHHhcCCeEEeCCHHH
Confidence 577789999888887776542 456677666662 111000000100011 122345788888877553
Q ss_pred hhh-------hcCC-----------CCCCEEEeCCCCCCcccccccCcch-------hHHHHHHHcCCCCCcEEEEEEcc
Q 001292 365 PML-------YSVL-----------DAGNFFVIPGSPADVWAVEAYSKSH-------EKYQLRKENGFLKDEIVVVVVGS 419 (1106)
Q Consensus 365 ~~~-------~~gi-----------~~~KI~VIpN~GVDl~~~e~F~ps~-------s~~~LR~~lGL~~d~~VIL~VGR 419 (1106)
... ..+. ...++.++|+ |||+ +.|.+.. ....+|..+ +++++|++|||
T Consensus 201 ~r~Fl~~~~~~l~~~~~~~~~~~~gr~~~v~v~p~-GID~---~~f~~~~~~~~~~~~~~~lr~~~---~~~~~il~VgR 273 (726)
T PRK14501 201 VRHFLSSVLRVLGYETELGEIRLGGRIVRVDAFPM-GIDY---DKFHNSAQDPEVQEEIRRLRQDL---RGRKIILSIDR 273 (726)
T ss_pred HHHHHHHHHHHcCCccCCCeEEECCEEEEEEEEEC-eEcH---HHHHHHhcCchHHHHHHHHHHHc---CCCEEEEEecC
Confidence 322 1110 1124678887 8998 6665431 112244443 46779999999
Q ss_pred cCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEc----CC-CCc--cHHHHHHHHHHcC-------CCCCcE
Q 001292 420 SFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCG----NS-TDG--YNDALQEVASRLG-------LLEHSV 485 (1106)
Q Consensus 420 l~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG----~G-per--Y~eeLkeLaeklG-------L~d~rV 485 (1106)
+.. .||+..+++|+..+++.++.. ..++++ +++| ++ ++. +...+.+++.+++ ... .+
T Consensus 274 l~~----~Kgi~~~l~A~~~ll~~~p~~---~~~v~l-v~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~p-v~ 344 (726)
T PRK14501 274 LDY----TKGIPRRLLAFERFLEKNPEW---RGKVRL-VQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTP-IH 344 (726)
T ss_pred ccc----ccCHHHHHHHHHHHHHhCccc---cCCEEE-EEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcce-EE
Confidence 998 999999999999887644211 123564 5554 22 221 1233334433322 111 34
Q ss_pred EEcC--ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhC-----CCEEecCCCCchhhhccCCeEEEEcCCCHHHH
Q 001292 486 RHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFG-----IPVITPDFPIIKEYVAEGAQVIFFQKDNPEGL 558 (1106)
Q Consensus 486 ~flG--~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G-----~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeL 558 (1106)
.+.| +.+++..+|+.||++++||..| |||++++|||||| +||++...|+..+++ .|++++|.|++++
T Consensus 345 ~~~~~~~~~~l~~ly~~aDv~v~~S~~E--G~~lv~~Eama~~~~~~g~~vls~~~G~~~~l~----~~llv~P~d~~~l 418 (726)
T PRK14501 345 YFYRSLPFEELVALYRAADVALVTPLRD--GMNLVAKEYVASRTDGDGVLILSEMAGAAAELA----EALLVNPNDIEGI 418 (726)
T ss_pred EEeCCCCHHHHHHHHHhccEEEeccccc--ccCcccceEEEEcCCCCceEEEecccchhHHhC----cCeEECCCCHHHH
Confidence 5666 5589999999999999999987 9999999999994 466666667777765 4899999999999
Q ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhc
Q 001292 559 SRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILENVLN 607 (1106)
Q Consensus 559 AeAI~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLyeslLk 607 (1106)
|++|.++++++.. .+.....++++.+.++.+...++.|.+.|+++.+
T Consensus 419 a~ai~~~l~~~~~--e~~~r~~~~~~~v~~~~~~~w~~~~l~~l~~~~~ 465 (726)
T PRK14501 419 AAAIKRALEMPEE--EQRERMQAMQERLRRYDVHKWASDFLDELREAAE 465 (726)
T ss_pred HHHHHHHHcCCHH--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 9999999997642 1344456788899888888999999999887654
No 86
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.66 E-value=1.7e-14 Score=162.94 Aligned_cols=299 Identities=15% Similarity=0.070 Sum_probs=191.0
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHHC-CCEEEEEEcCCCC---c---------------------------hHHHHHH
Q 001292 224 RIGLILGNMAKDSRSLLLITVVKNLQKL-GYVFKIYAVRSGN---S---------------------------HSLWEQI 272 (1106)
Q Consensus 224 RIalVlg~L~~gGesl~vv~LakaLqe~-GyeVtV~t~~dg~---~---------------------------~~i~r~l 272 (1106)
||++|+|. -++-..+.+++++|++. ++++.++.++... . .......
T Consensus 1 ~i~~~~gt---r~~~~~~~pl~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 77 (363)
T cd03786 1 KILVVTGT---RPEYIKLAPLIRALKKDPGFELVLVVTGQHYDMEMGVTFFEILFIIKPDYDLLLGSDSQSLGAQTAGLL 77 (363)
T ss_pred CEEEEEec---CHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCChhhhHHHHHhhCCCCCCEEEecCCCCCCHHHHHHHHH
Confidence 35555544 24556778888989887 8888876553210 0 0011111
Q ss_pred hHHHHHhhccCccEEEEccccH-HHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCccc-ccchhhhhhhHHhHHHHHHHH
Q 001292 273 AGQISILGQEQYSLIDWSIFDG-IIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLA-NRLPVYVERGFQNLLSYWKSV 350 (1106)
Q Consensus 273 g~lvkiIr~~~pDiIh~~~~~~-i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls-~r~~~Y~~~gleklis~~~~~ 350 (1106)
..+.+.++..+||+||++.... .+...+..+. .++|++.+.|+.... ..... .. ... ..
T Consensus 78 ~~l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~----------~~iPvv~~~~g~~s~~~~~~~------~~-~r~--~~ 138 (363)
T cd03786 78 IGLEAVLLEEKPDLVLVLGDTNETLAAALAAFK----------LGIPVAHVEAGLRSFDRGMPD------EE-NRH--AI 138 (363)
T ss_pred HHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHH----------cCCCEEEEecccccCCCCCCc------hH-HHH--HH
Confidence 2245667778999999986433 3334444432 589988765553211 01111 10 001 12
Q ss_pred hccccEEEecCCChhhh--hcCCCCCCEEEeCCCCCCcccccccCcchh-HHHHHHHcCCCCCcEEEEEEcccCcccccc
Q 001292 351 FSRVNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAVEAYSKSHE-KYQLRKENGFLKDEIVVVVVGSSFFYNELS 427 (1106)
Q Consensus 351 l~~AD~VIa~S~~~~~~--~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s-~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~ 427 (1106)
.+.+|.+++++...... ..+++++++.+++|..+|. ..+.+... ....+..++++++.++++++|+..... ..
T Consensus 139 ~~~ad~~~~~s~~~~~~l~~~G~~~~kI~vign~v~d~---~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~r~~~~~-~~ 214 (363)
T cd03786 139 DKLSDLHFAPTEEARRNLLQEGEPPERIFVVGNTMIDA---LLRLLELAKKELILELLGLLPKKYILVTLHRVENVD-DG 214 (363)
T ss_pred HHHhhhccCCCHHHHHHHHHcCCCcccEEEECchHHHH---HHHHHHhhccchhhhhcccCCCCEEEEEeCCccccC-Ch
Confidence 34678888888665554 4578888999999844564 12211111 122345678877777777888755311 35
Q ss_pred CCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCC-CCCcEEEcC--ChhhHHHHHHHcCeE
Q 001292 428 WDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGL-LEHSVRHYG--FNGDVNGVLLMADIV 504 (1106)
Q Consensus 428 Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL-~d~rV~flG--~~eDL~~LyaaADVf 504 (1106)
|+.+.+++|++.+.. .++. +++.|.++.+ +.+++.+.++++ .+ +|.|.| +..++..+|+.||++
T Consensus 215 k~~~~l~~al~~l~~---------~~~~-vi~~~~~~~~--~~l~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~ad~~ 281 (363)
T cd03786 215 EQLEEILEALAELAE---------EDVP-VVFPNHPRTR--PRIREAGLEFLGHHP-NVLLISPLGYLYFLLLLKNADLV 281 (363)
T ss_pred HHHHHHHHHHHHHHh---------cCCE-EEEECCCChH--HHHHHHHHhhccCCC-CEEEECCcCHHHHHHHHHcCcEE
Confidence 789999999976642 1344 4555555544 788888888876 44 899997 457899999999999
Q ss_pred EEccCCCCCCCcHHHHHHHHhCCCEEecCC-CCchhhhccCCeEEEEcCC-CHHHHHHHHHHHHhCccc
Q 001292 505 LYGSSQVEQGFPSLIVRAMTFGIPVITPDF-PIIKEYVAEGAQVIFFQKD-NPEGLSRAFSLFISNGKL 571 (1106)
Q Consensus 505 V~PS~~EeEGFGlvLLEAMA~G~PVIASD~-gGI~EiV~Dg~nG~LV~~~-D~eeLAeAI~~LLsDpel 571 (1106)
|.+|. | ++.|||++|+|||+++. +..++.++ +|..+... |+++++++|..+++++..
T Consensus 282 v~~Sg------g-i~~Ea~~~g~PvI~~~~~~~~~~~~~---~g~~~~~~~~~~~i~~~i~~ll~~~~~ 340 (363)
T cd03786 282 LTDSG------G-IQEEASFLGVPVLNLRDRTERPETVE---SGTNVLVGTDPEAILAAIEKLLSDEFA 340 (363)
T ss_pred EEcCc------c-HHhhhhhcCCCEEeeCCCCccchhhh---eeeEEecCCCHHHHHHHHHHHhcCchh
Confidence 99872 3 47999999999999864 44666664 44444433 799999999999999876
No 87
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.64 E-value=1.1e-13 Score=146.75 Aligned_cols=223 Identities=22% Similarity=0.339 Sum_probs=164.9
Q ss_pred ccEEEecCCChhhh-hcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCc--EEEEEEcccCccccccCCH
Q 001292 354 VNVIVFPDYTLPML-YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDE--IVVVVVGSSFFYNELSWDY 430 (1106)
Q Consensus 354 AD~VIa~S~~~~~~-~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~--~VIL~VGRl~~y~kg~Kg~ 430 (1106)
.+.++..+...... .......++.++++ +++. +.+... ..++..+. .+++++|++.+ .|+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~--------~~~~~~~~~~~~i~~~g~~~~----~k~~ 214 (381)
T COG0438 151 ADRVIAVSPALKELLEALGVPNKIVVIPN-GIDT---EKFAPA--------RIGLLPEGGKFVVLYVGRLDP----EKGL 214 (381)
T ss_pred ccEEEECCHHHHHHHHHhCCCCCceEecC-CcCH---HHcCcc--------ccCCCcccCceEEEEeeccCh----hcCH
Confidence 56666666543232 12222235777776 6776 333221 22333333 69999998776 7899
Q ss_pred HHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChh--hHHHHHHHcCeEEEcc
Q 001292 431 AVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNG--DVNGVLLMADIVLYGS 508 (1106)
Q Consensus 431 dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~e--DL~~LyaaADVfV~PS 508 (1106)
+.+++++..+.... +++. ++++|.++.. .+.+..++.+.+..+ .|.++|... ++..+++.||++++||
T Consensus 215 ~~~i~~~~~~~~~~-------~~~~-~~~~g~~~~~-~~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~~~~~v~ps 284 (381)
T COG0438 215 DLLIEAAAKLKKRG-------PDIK-LVIVGDGPER-REELEKLAKKLGLED-NVKFLGYVPDEELAELLASADVFVLPS 284 (381)
T ss_pred HHHHHHHHHhhhhc-------CCeE-EEEEcCCCcc-HHHHHHHHHHhCCCC-cEEEecccCHHHHHHHHHhCCEEEecc
Confidence 99999998776422 3356 6888988863 356777888888766 899999654 7888999999999999
Q ss_pred CCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH-
Q 001292 509 SQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAK- 587 (1106)
Q Consensus 509 ~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ak- 587 (1106)
..| +||++++|||++|+|||+++.++..+++.++.+|++++..|++++++++..++++++. .+.++..+++.+.
T Consensus 285 ~~e--~~~~~~~Ea~a~g~pvi~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~ 359 (381)
T COG0438 285 LSE--GFGLVLLEAMAAGTPVIASDVGGIPEVVEDGETGLLVPPGDVEELADALEQLLEDPEL---REELGEAARERVEE 359 (381)
T ss_pred ccc--cchHHHHHHHhcCCcEEECCCCChHHHhcCCCceEecCCCCHHHHHHHHHHHhcCHHH---HHHHHHHHHHHHHH
Confidence 886 9999999999999999999999999999887778877777899999999999999854 5667765555554
Q ss_pred HhcHHHHHHHHHHHHHHHhc
Q 001292 588 NMLALDCVTRYARILENVLN 607 (1106)
Q Consensus 588 e~fsee~v~~Y~eLyeslLk 607 (1106)
.+.|......+.+++.....
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~ 379 (381)
T COG0438 360 EFSWERIAEQLLELYEELLA 379 (381)
T ss_pred hcCHHHHHHHHHHHHHHHHh
Confidence 55566666688888887653
No 88
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.64 E-value=6.6e-14 Score=158.69 Aligned_cols=287 Identities=12% Similarity=0.053 Sum_probs=181.8
Q ss_pred ChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHHHHHhHHHHHhhccCc-cEEEEccccHH---HHHHHHHHHhhhhcc
Q 001292 235 DSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLWEQIAGQISILGQEQY-SLIDWSIFDGI---IADSLEAKEAISSLM 310 (1106)
Q Consensus 235 gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r~lg~lvkiIr~~~p-DiIh~~~~~~i---~v~~La~k~~idII~ 310 (1106)
.+...+-.++.+.+.+.|++...+...+.......+....+..++...++ |+||++.+... +...+..+..
T Consensus 15 ~a~~ka~~d~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvv~~~~P~~~~~~~~~~~~~~~k----- 89 (333)
T PRK09814 15 SAALKAKNDVTKIAKQLGFEELGIYFYNIKRDSLSERSKRLDGILASLKPGDIVIFQFPTWNGFEFDRLFVDKLK----- 89 (333)
T ss_pred chHHHHHHHHHHHHHHCCCeEeEEEecccccchHHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHH-----
Confidence 57888999999999999999876654332111111111112334555566 88888654321 1122222221
Q ss_pred cCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecCCChhhh--hcCCCCCCEEEeCCCCCCccc
Q 001292 311 QEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWA 388 (1106)
Q Consensus 311 te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~~~~~~--~~gi~~~KI~VIpN~GVDl~~ 388 (1106)
+.++|+|+++|+.... +... . ..........++.+|.++++|...... ..+++..++.++++ ++..
T Consensus 90 ---~~~~k~i~~ihD~~~~-~~~~--~---~~~~~~~~~~~~~aD~iI~~S~~~~~~l~~~g~~~~~i~~~~~--~~~~- 157 (333)
T PRK09814 90 ---KKQVKIIILIHDIEPL-RFDS--N---YYLMKEEIDMLNLADVLIVHSKKMKDRLVEEGLTTDKIIVQGI--FDYL- 157 (333)
T ss_pred ---HcCCEEEEEECCcHHH-hccc--c---chhhHHHHHHHHhCCEEEECCHHHHHHHHHcCCCcCceEeccc--cccc-
Confidence 1479999999994211 1110 0 000112245678999999999776665 34666667777765 3320
Q ss_pred ccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccH
Q 001292 389 VEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYN 468 (1106)
Q Consensus 389 ~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~ 468 (1106)
.... .+. .....++|+|+|++.. .. .+.. ..++++ ++++|+|++.
T Consensus 158 -~~~~-------~~~---~~~~~~~i~yaG~l~k------~~--~l~~-------------~~~~~~-l~i~G~g~~~-- 202 (333)
T PRK09814 158 -NDIE-------LVK---TPSFQKKINFAGNLEK------SP--FLKN-------------WSQGIK-LTVFGPNPED-- 202 (333)
T ss_pred -cccc-------ccc---cccCCceEEEecChhh------ch--HHHh-------------cCCCCe-EEEECCCccc--
Confidence 0010 010 1224568999997653 11 1110 125677 6889999865
Q ss_pred HHHHHHHHHcCCCCCcEEEcCC--hhhHHHHHHHcCeEEEccCC-------C--CCCCcHHHHHHHHhCCCEEecCCCCc
Q 001292 469 DALQEVASRLGLLEHSVRHYGF--NGDVNGVLLMADIVLYGSSQ-------V--EQGFPSLIVRAMTFGIPVITPDFPII 537 (1106)
Q Consensus 469 eeLkeLaeklGL~d~rV~flG~--~eDL~~LyaaADVfV~PS~~-------E--eEGFGlvLLEAMA~G~PVIASD~gGI 537 (1106)
. ...+ +|.|.|. .+++..+|+. |+.+++... + .-.+|+++.|+||||+|||+++.+++
T Consensus 203 ~---------~~~~-~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~~~~ 271 (333)
T PRK09814 203 L---------ENSA-NISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSKAAI 271 (333)
T ss_pred c---------ccCC-CeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECCCccH
Confidence 2 2344 8999994 4789999988 765554311 0 01579999999999999999999999
Q ss_pred hhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcH
Q 001292 538 KEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLA 591 (1106)
Q Consensus 538 ~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fs 591 (1106)
.++|.++.+|++++ +.++++++|..+. + +. +.+|++++++.++....
T Consensus 272 ~~~V~~~~~G~~v~--~~~el~~~l~~~~-~-~~---~~~m~~n~~~~~~~~~~ 318 (333)
T PRK09814 272 ADFIVENGLGFVVD--SLEELPEIIDNIT-E-EE---YQEMVENVKKISKLLRN 318 (333)
T ss_pred HHHHHhCCceEEeC--CHHHHHHHHHhcC-H-HH---HHHHHHHHHHHHHHHhc
Confidence 99999999999997 7889999999863 2 22 58899999998866543
No 89
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.58 E-value=3.9e-13 Score=159.54 Aligned_cols=281 Identities=7% Similarity=-0.002 Sum_probs=190.7
Q ss_pred cEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecCCCh
Q 001292 285 SLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTL 364 (1106)
Q Consensus 285 DiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~~~ 364 (1106)
|+|-+|.|...++..+..+.. ...++-+..|-- +...-.+...+.-+. ....+-.+|.|-+++...
T Consensus 134 d~vWVhDYhL~llp~~LR~~~---------~~~~IgfFlHiP-FPs~eifr~LP~r~~----ll~glL~aDliGFqt~~y 199 (487)
T TIGR02398 134 ATVWVHDYNLWLVPGYIRQLR---------PDLKIAFFHHTP-FPSADVFNILPWREQ----IIGSLLCCDYIGFHIPRY 199 (487)
T ss_pred CEEEEecchhhHHHHHHHHhC---------CCCeEEEEeeCC-CCChHHHhhCCchHH----HHHHHhcCCeEEeCCHHH
Confidence 577779999888887776543 345666666662 110000000100011 123345888888887654
Q ss_pred hhh-------hcCCCC-----------------------------CC---EEEeCCCCCCcccccccCcc-------hhH
Q 001292 365 PML-------YSVLDA-----------------------------GN---FFVIPGSPADVWAVEAYSKS-------HEK 398 (1106)
Q Consensus 365 ~~~-------~~gi~~-----------------------------~K---I~VIpN~GVDl~~~e~F~ps-------~s~ 398 (1106)
... ..++.. ++ +.++|. |||. +.|.+. ...
T Consensus 200 ~~~Fl~~~~r~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~gr~v~v~~~Pi-GID~---~~f~~~~~~~~~~~~~ 275 (487)
T TIGR02398 200 VENFVDAARGLMPLQTVSRQNVDPRFITVGTALGEERMTTALDTGNRVVKLGAHPV-GTDP---ERIRSALAAASIREMM 275 (487)
T ss_pred HHHHHHHHHHHhCCccccccccccccccccccccccccccceeECCEEEEEEEEEC-EecH---HHHHHHhcCchHHHHH
Confidence 432 111100 11 456774 8998 555332 123
Q ss_pred HHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCC-----C--ccHHHH
Q 001292 399 YQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNST-----D--GYNDAL 471 (1106)
Q Consensus 399 ~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~Gp-----e--rY~eeL 471 (1106)
..+|++++ ++.+|+.++|+.. .||....++|+.++++++++.. .++. |+++|... + .+..++
T Consensus 276 ~~lr~~~~---~~kiIl~VDRLDy----~KGI~~kl~Afe~~L~~~Pe~~---gkv~-Lvqi~~psr~~v~~y~~l~~~v 344 (487)
T TIGR02398 276 ERIRSELA---GVKLILSAERVDY----TKGILEKLNAYERLLERRPELL---GKVT-LVTACVPAASGMTIYDELQGQI 344 (487)
T ss_pred HHHHHHcC---CceEEEEeccccc----ccCHHHHHHHHHHHHHhCcccc---CceE-EEEEeCCCcccchHHHHHHHHH
Confidence 45777777 6789999999998 8999999999999987653221 2456 45555432 1 134666
Q ss_pred HHHHHHc-------CCCCCcEEEcCC--hhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCC----CEEecCCCCch
Q 001292 472 QEVASRL-------GLLEHSVRHYGF--NGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGI----PVITPDFPIIK 538 (1106)
Q Consensus 472 keLaekl-------GL~d~rV~flG~--~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~----PVIASD~gGI~ 538 (1106)
++++.+. +..+ .+.+.+. .+++..+|+.|||++++|..| |++++..|+|||+. |+|.|.++|..
T Consensus 345 ~~~v~~IN~~fg~~~~~p-v~~~~~~v~~~el~alYr~ADV~lvT~lrD--GmNLVa~Eyva~~~~~~GvLILSefaGaa 421 (487)
T TIGR02398 345 EQAVGRINGRFARIGWTP-LQFFTRSLPYEEVSAWFAMADVMWITPLRD--GLNLVAKEYVAAQGLLDGVLVLSEFAGAA 421 (487)
T ss_pred HHHHHHHhhccCCCCCcc-EEEEcCCCCHHHHHHHHHhCCEEEECcccc--ccCcchhhHHhhhcCCCCCEEEeccccch
Confidence 6766664 4454 5777784 488999999999999999997 99999999999999 99999999999
Q ss_pred hhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 001292 539 EYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARIL 602 (1106)
Q Consensus 539 EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLy 602 (1106)
+.+ ..+++++|.|++++|++|.++++.|.. ++++-.+..++.+..+.....++.+..-+
T Consensus 422 ~~l---~~AllVNP~d~~~~A~ai~~AL~m~~~--Er~~R~~~l~~~v~~~d~~~W~~~fl~~l 480 (487)
T TIGR02398 422 VEL---KGALLTNPYDPVRMDETIYVALAMPKA--EQQARMREMFDAVNYYDVQRWADEFLAAV 480 (487)
T ss_pred hhc---CCCEEECCCCHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHhhCCHHHHHHHHHHHh
Confidence 888 358999999999999999999999874 24444556666676666655555554433
No 90
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.56 E-value=1.8e-12 Score=143.84 Aligned_cols=267 Identities=11% Similarity=0.053 Sum_probs=176.3
Q ss_pred CCCcEEEEEcCCcccccc----h---------hhhhhhHHhHHHHHHHHhccccEEEecCCChh-hhhcCCCCCCEEEeC
Q 001292 315 HSIPLVWIIQEDSLANRL----P---------VYVERGFQNLLSYWKSVFSRVNVIVFPDYTLP-MLYSVLDAGNFFVIP 380 (1106)
Q Consensus 315 ~gIPVI~tIHna~Ls~r~----~---------~Y~~~gleklis~~~~~l~~AD~VIa~S~~~~-~~~~gi~~~KI~VIp 380 (1106)
.++||+.-+|--.++... . +-....+..+...|..+=..||.+.+.+.-.. -+..-....+..+++
T Consensus 171 ~~~~V~aYvHYP~iS~DML~~l~qrq~s~~l~~~KlaY~rlFa~lY~~~G~~ad~vm~NssWT~nHI~qiW~~~~~~iVy 250 (465)
T KOG1387|consen 171 RRIPVVAYVHYPTISTDMLKKLFQRQKSGILVWGKLAYWRLFALLYQSAGSKADIVMTNSSWTNNHIKQIWQSNTCSIVY 250 (465)
T ss_pred ccCceEEEEecccccHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHhccccceEEEecchhhHHHHHHHhhccceeEEc
Confidence 678999888883322111 0 10111112233333344467777777653221 122223334556665
Q ss_pred CCCCCcccccccCcchhHHHHHHHcCC-CCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEE
Q 001292 381 GSPADVWAVEAYSKSHEKYQLRKENGF-LKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFL 459 (1106)
Q Consensus 381 N~GVDl~~~e~F~ps~s~~~LR~~lGL-~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLII 459 (1106)
. |.++ + .+....+- ..+.+.++++|.+.+ +|++. +|+.++......+.. ...++++ |++
T Consensus 251 P-PC~~---e---------~lks~~~te~~r~~~ll~l~Q~RP----EKnH~-~Lql~Al~~~~~pl~-a~~~~iK-L~i 310 (465)
T KOG1387|consen 251 P-PCST---E---------DLKSKFGTEGERENQLLSLAQFRP----EKNHK-ILQLFALYLKNEPLE-ASVSPIK-LII 310 (465)
T ss_pred C-CCCH---H---------HHHHHhcccCCcceEEEEEeecCc----ccccH-HHHHHHHHHhcCchh-hccCCce-EEE
Confidence 3 4554 1 33333333 346789999998888 88998 555443333221111 2346777 788
Q ss_pred EcCC----CCccHHHHHHHHHHcCCCCCcEEEcC--ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecC
Q 001292 460 CGNS----TDGYNDALQEVASRLGLLEHSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPD 533 (1106)
Q Consensus 460 VG~G----perY~eeLkeLaeklGL~d~rV~flG--~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD 533 (1106)
+|.. ++.+...++.+++++.++. +|.|.- +-+++..+|+.|.+.|.+-.-| .||+.++|+||+|+-+|+.|
T Consensus 311 vGScRneeD~ervk~Lkd~a~~L~i~~-~v~F~~N~Py~~lv~lL~~a~iGvh~MwNE--HFGIsVVEyMAAGlIpi~h~ 387 (465)
T KOG1387|consen 311 VGSCRNEEDEERVKSLKDLAEELKIPK-HVQFEKNVPYEKLVELLGKATIGVHTMWNE--HFGISVVEYMAAGLIPIVHN 387 (465)
T ss_pred EeccCChhhHHHHHHHHHHHHhcCCcc-ceEEEecCCHHHHHHHhccceeehhhhhhh--hcchhHHHHHhcCceEEEeC
Confidence 8862 2335677899999999998 898887 5589999999999999886554 99999999999999999999
Q ss_pred CCCch-hhhcc---CCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHH-HHHHHHHHHhcC
Q 001292 534 FPIIK-EYVAE---GAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVT-RYARILENVLNF 608 (1106)
Q Consensus 534 ~gGI~-EiV~D---g~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~-~Y~eLyeslLk~ 608 (1106)
.||.. ++|.+ ..+|++.+ +.+++|++|.+++..... .+..|.++||..+. .|++...+ .+...+.+++..
T Consensus 388 SgGP~lDIV~~~~G~~tGFla~--t~~EYaE~iLkIv~~~~~--~r~~~r~~AR~s~~-RFsE~~F~kd~~~~i~kll~e 462 (465)
T KOG1387|consen 388 SGGPLLDIVTPWDGETTGFLAP--TDEEYAEAILKIVKLNYD--ERNMMRRNARKSLA-RFGELKFDKDWENPICKLLEE 462 (465)
T ss_pred CCCCceeeeeccCCccceeecC--ChHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHH-HhhHHHHHHhHhHHHHHhhcc
Confidence 99865 55543 34899884 788999999999876553 25777888887765 56665555 888888888765
Q ss_pred C
Q 001292 609 P 609 (1106)
Q Consensus 609 P 609 (1106)
|
T Consensus 463 ~ 463 (465)
T KOG1387|consen 463 E 463 (465)
T ss_pred c
Confidence 4
No 91
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.50 E-value=6.7e-14 Score=136.39 Aligned_cols=133 Identities=24% Similarity=0.336 Sum_probs=94.9
Q ss_pred cEEEEEEcccCccccccCCHHHHHH-HHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcC
Q 001292 411 EIVVVVVGSSFFYNELSWDYAVAMH-DVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYG 489 (1106)
Q Consensus 411 ~~VIL~VGRl~~y~kg~Kg~dlLLe-A~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG 489 (1106)
-++|+++|+... .|+.+.+++ ++.++.++. |+++ |+|+|.+++ +++++ ..+ +|++.|
T Consensus 2 ~~~i~~~g~~~~----~k~~~~li~~~~~~l~~~~-------p~~~-l~i~G~~~~----~l~~~-----~~~-~v~~~g 59 (135)
T PF13692_consen 2 ILYIGYLGRIRP----DKGLEELIEAALERLKEKH-------PDIE-LIIIGNGPD----ELKRL-----RRP-NVRFHG 59 (135)
T ss_dssp -EEEE--S-SSG----GGTHHHHHH-HHHHHHHHS-------TTEE-EEEECESS-----HHCCH-----HHC-TEEEE-
T ss_pred cccccccccccc----cccccchhhhHHHHHHHHC-------cCEE-EEEEeCCHH----HHHHh-----cCC-CEEEcC
Confidence 468889997766 889999999 998777543 7888 678888774 34444 123 799999
Q ss_pred ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhC
Q 001292 490 FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISN 568 (1106)
Q Consensus 490 ~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsD 568 (1106)
..+++..+|+.||++++|+... +++|.+++|||++|+|||+++. +..+++.....|.++ .+|+++++++|.++++|
T Consensus 60 ~~~e~~~~l~~~dv~l~p~~~~-~~~~~k~~e~~~~G~pvi~~~~-~~~~~~~~~~~~~~~-~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 60 FVEELPEILAAADVGLIPSRFN-EGFPNKLLEAMAAGKPVIASDN-GAEGIVEEDGCGVLV-ANDPEELAEAIERLLND 135 (135)
T ss_dssp S-HHHHHHHHC-SEEEE-BSS--SCC-HHHHHHHCTT--EEEEHH-HCHCHS---SEEEE--TT-HHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHhCCEEEEEeeCC-CcCcHHHHHHHHhCCCEEECCc-chhhheeecCCeEEE-CCCHHHHHHHHHHHhcC
Confidence 8889999999999999998753 4999999999999999999998 566677655677777 78999999999999876
No 92
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.46 E-value=2.5e-11 Score=140.88 Aligned_cols=298 Identities=13% Similarity=0.074 Sum_probs=175.2
Q ss_pred CCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCc-------------------hHHHH-------HHhHH
Q 001292 222 PPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNS-------------------HSLWE-------QIAGQ 275 (1106)
Q Consensus 222 ~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~-------------------~~i~r-------~lg~l 275 (1106)
-|+|.++.|. .+|--... .++++|+++|.+|.++....... ....+ .+...
T Consensus 5 ~~ki~i~aGg--tsGhi~pa-al~~~l~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~v~G~~~~l~~~~~~~~~~~~~ 81 (385)
T TIGR00215 5 IPTIALVAGE--ASGDILGA-GLRQQLKEHYPNARFIGVAGPRMAAEGCEVLYSMEELSVMGLREVLGRLGRLLKIRKEV 81 (385)
T ss_pred CCeEEEEeCC--ccHHHHHH-HHHHHHHhcCCCcEEEEEccHHHHhCcCccccChHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 3567666544 23333444 99999999999998887653110 01111 12225
Q ss_pred HHHhhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhcccc
Q 001292 276 ISILGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVN 355 (1106)
Q Consensus 276 vkiIr~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD 355 (1106)
.++++..+||++....+.+.-+. +..... ..++|+|+.+ .+ ..|...... .+. ..+.+|
T Consensus 82 ~~~l~~~kPd~vi~~g~~~~~~~-~a~aa~--------~~gip~v~~i--~P-~~waw~~~~---~r~------l~~~~d 140 (385)
T TIGR00215 82 VQLAKQAKPDLLVGIDAPDFNLT-KELKKK--------DPGIKIIYYI--SP-QVWAWRKWR---AKK------IEKATD 140 (385)
T ss_pred HHHHHhcCCCEEEEeCCCCccHH-HHHHHh--------hCCCCEEEEe--CC-cHhhcCcch---HHH------HHHHHh
Confidence 67788899999988776442222 211111 2689999663 21 111111000 122 224567
Q ss_pred EEEecCCChhhhhcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEc-ccCccccccCCHHHHH
Q 001292 356 VIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVG-SSFFYNELSWDYAVAM 434 (1106)
Q Consensus 356 ~VIa~S~~~~~~~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VG-Rl~~y~kg~Kg~dlLL 434 (1106)
.|++........+... ..+..+++|...|. .......+...|+.++++++.++|+++| +... +..|....++
T Consensus 141 ~v~~~~~~e~~~~~~~-g~~~~~vGnPv~~~----~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~a--ei~k~~~~ll 213 (385)
T TIGR00215 141 FLLAILPFEKAFYQKK-NVPCRFVGHPLLDA----IPLYKPDRKSAREKLGIDHNGETLALLPGSRGS--EVEKLFPLFL 213 (385)
T ss_pred HhhccCCCcHHHHHhc-CCCEEEECCchhhh----ccccCCCHHHHHHHcCCCCCCCEEEEECCCCHH--HHHHhHHHHH
Confidence 7777766555443321 13566777732232 1111123455688899988888777654 3221 2245677788
Q ss_pred HHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCC
Q 001292 435 HDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQG 514 (1106)
Q Consensus 435 eA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEG 514 (1106)
+|+..+.+. .|++++++.++.+... +.++++.+.++... .|.+.+. ++..+|++||++|++|
T Consensus 214 ~a~~~l~~~-------~p~~~~vi~~~~~~~~--~~~~~~~~~~~~~~-~v~~~~~--~~~~~l~aADl~V~~S------ 275 (385)
T TIGR00215 214 KAAQLLEQQ-------EPDLRRVLPVVNFKRR--LQFEQIKAEYGPDL-QLHLIDG--DARKAMFAADAALLAS------ 275 (385)
T ss_pred HHHHHHHHh-------CCCeEEEEEeCCchhH--HHHHHHHHHhCCCC-cEEEECc--hHHHHHHhCCEEeecC------
Confidence 887666532 3777765555665543 67777777776654 6766643 5678999999999997
Q ss_pred CcHHHHHHHHhCCCEEec-CCC----------------CchhhhccCCeEE-EE-cCCCHHHHHHHHHHHHhCc
Q 001292 515 FPSLIVRAMTFGIPVITP-DFP----------------IIKEYVAEGAQVI-FF-QKDNPEGLSRAFSLFISNG 569 (1106)
Q Consensus 515 FGlvLLEAMA~G~PVIAS-D~g----------------GI~EiV~Dg~nG~-LV-~~~D~eeLAeAI~~LLsDp 569 (1106)
|.+.+|+|++|+|+|.. .+. +++.++.+..... +. ..-+++.|++.+.++++|+
T Consensus 276 -Gt~tlEa~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~~ 348 (385)
T TIGR00215 276 -GTAALEAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLENG 348 (385)
T ss_pred -CHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcCC
Confidence 56677999999999887 111 2223332222111 11 2236899999999999999
No 93
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2.8e-10 Score=126.85 Aligned_cols=168 Identities=16% Similarity=0.217 Sum_probs=126.7
Q ss_pred CcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcC
Q 001292 410 DEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYG 489 (1106)
Q Consensus 410 d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG 489 (1106)
+.+.++..+..... ..++.++++|+...-++.......-|.+ +.||.|.||.+ +.+.+.++++.+.. |.+.-
T Consensus 253 ~~pallvsSTswTp---DEdf~ILL~AL~~y~~~~~~~~~~lP~l-lciITGKGPlk--E~Y~~~I~~~~~~~--v~~~t 324 (444)
T KOG2941|consen 253 ERPALLVSSTSWTP---DEDFGILLEALVIYEEQLYDKTHNLPSL-LCIITGKGPLK--EKYSQEIHEKNLQH--VQVCT 324 (444)
T ss_pred CCCeEEEecCCCCC---cccHHHHHHHHHhhhhhhhhccCCCCcE-EEEEcCCCchh--HHHHHHHHHhcccc--eeeee
Confidence 34445544444432 4489999999976544444444445877 47889999987 88999999999985 44443
Q ss_pred ---ChhhHHHHHHHcCeEEE--ccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHH
Q 001292 490 ---FNGDVNGVLLMADIVLY--GSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSL 564 (1106)
Q Consensus 490 ---~~eDL~~LyaaADVfV~--PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~ 564 (1106)
..+|.+.+++.||+.|+ +|++ |=..|++++.-..||+||+|-++..+.|+|+|++||+++. |.++|++.+.-
T Consensus 325 pWL~aEDYP~ll~saDlGVcLHtSSS-GLDLPMKVVDMFGcglPvcA~~fkcl~ELVkh~eNGlvF~--Ds~eLa~ql~~ 401 (444)
T KOG2941|consen 325 PWLEAEDYPKLLASADLGVCLHTSSS-GLDLPMKVVDMFGCGLPVCAVNFKCLDELVKHGENGLVFE--DSEELAEQLQM 401 (444)
T ss_pred cccccccchhHhhccccceEeeecCc-ccCcchhHHHhhcCCCceeeecchhHHHHHhcCCCceEec--cHHHHHHHHHH
Confidence 66899999999998774 4444 2357999999999999999999999999999999999994 89999999999
Q ss_pred HHh----CcccHHHHHHHHHHHHHHHHHhcHH
Q 001292 565 FIS----NGKLSKFARTVASAGRLHAKNMLAL 592 (1106)
Q Consensus 565 LLs----DpelRk~r~~mGe~Are~ake~fse 592 (1106)
+++ +... ..++-.+.++. ++.-|+
T Consensus 402 lf~~fp~~a~~---l~~lkkn~~e~-~e~RW~ 429 (444)
T KOG2941|consen 402 LFKNFPDNADE---LNQLKKNLREE-QELRWD 429 (444)
T ss_pred HHhcCCCCHHH---HHHHHHhhHHH-HhhhHH
Confidence 998 4443 55666666665 334443
No 94
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.39 E-value=2.1e-11 Score=153.36 Aligned_cols=285 Identities=10% Similarity=0.108 Sum_probs=186.5
Q ss_pred cEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecCCCh
Q 001292 285 SLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTL 364 (1106)
Q Consensus 285 DiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~~~ 364 (1106)
|+|-+|.|...++..+..+.. ...++-+..|-- +...-.+...+.-+. ....+-.+|.|-|++...
T Consensus 233 D~VWVHDYHL~LlP~~LR~~~---------p~~~IGfFlHiP-FPs~Eifr~LP~r~e----lL~glL~aDlIGFqT~~y 298 (934)
T PLN03064 233 DVVWCHDYHLMFLPKCLKEYN---------SNMKVGWFLHTP-FPSSEIHRTLPSRSE----LLRSVLAADLVGFHTYDY 298 (934)
T ss_pred CEEEEecchhhHHHHHHHHhC---------CCCcEEEEecCC-CCChHHHhhCCcHHH----HHHHHhcCCeEEeCCHHH
Confidence 577779999888887776543 456777777762 110000101100111 223355899999988655
Q ss_pred hhh-------hcCCC--------CCC---EEEeCCCCCCcccccccCcc-------hhHHHHHHHcCCCCCcEEEEEEcc
Q 001292 365 PML-------YSVLD--------AGN---FFVIPGSPADVWAVEAYSKS-------HEKYQLRKENGFLKDEIVVVVVGS 419 (1106)
Q Consensus 365 ~~~-------~~gi~--------~~K---I~VIpN~GVDl~~~e~F~ps-------~s~~~LR~~lGL~~d~~VIL~VGR 419 (1106)
... ..+.. ..+ +.+.| +|||. +.|... .....+++.++ ++.+|+.|+|
T Consensus 299 ~rhFl~~c~rlLg~~~~~~~v~~~Gr~v~V~~~P-iGID~---~~f~~~~~~~~v~~~~~~lr~~~~---g~kiIlgVDR 371 (934)
T PLN03064 299 ARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFP-IGIDS---DRFIRALETPQVQQHIKELKERFA---GRKVMLGVDR 371 (934)
T ss_pred HHHHHHHHHHHhCccccCCeEEECCEEEEEEEEe-CEEcH---HHHHHHhcChhHHHHHHHHHHHhC---CceEEEEeec
Confidence 433 11211 112 23335 68887 455432 12345677665 5679999999
Q ss_pred cCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEE-----cCCCCc--cHHHHHHHHHHcC----CCC-CcEEE
Q 001292 420 SFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLC-----GNSTDG--YNDALQEVASRLG----LLE-HSVRH 487 (1106)
Q Consensus 420 l~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIV-----G~Gper--Y~eeLkeLaeklG----L~d-~rV~f 487 (1106)
+.. .||+...++|+..+++++++.. .++. |+.+ +++++. +..++.+++.+.+ -.+ .-|++
T Consensus 372 LD~----~KGI~~kL~AfE~fL~~~Pe~r---~kVV-LvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~ 443 (934)
T PLN03064 372 LDM----IKGIPQKILAFEKFLEENPEWR---DKVV-LLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHH 443 (934)
T ss_pred ccc----ccCHHHHHHHHHHHHHhCcccc---CCEE-EEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEE
Confidence 998 8999999999999887653221 1222 2222 223331 1223444444332 111 11555
Q ss_pred cC---ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCC----CEEecCCCCchhhhccCCeEEEEcCCCHHHHHH
Q 001292 488 YG---FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGI----PVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSR 560 (1106)
Q Consensus 488 lG---~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~----PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAe 560 (1106)
+. +.+++..+|+.|||++++|..| |++++++|+|||+. ++|.|.+.|..+.+ +..+++++|.|++++|+
T Consensus 444 ~~~~l~~eeL~AlY~~ADV~lvTslrD--GmNLva~Eyva~~~~~~GvLILSEfaGaa~~L--~~~AllVNP~D~~~vA~ 519 (934)
T PLN03064 444 LDRSLDFHALCALYAVTDVALVTSLRD--GMNLVSYEFVACQDSKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVAA 519 (934)
T ss_pred eccCCCHHHHHHHHHhCCEEEeCcccc--ccCchHHHHHHhhcCCCCCeEEeCCCchHHHh--CCceEEECCCCHHHHHH
Confidence 44 4588999999999999999997 99999999999954 44559999999989 55789999999999999
Q ss_pred HHHHHHh-CcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 001292 561 AFSLFIS-NGKLSKFARTVASAGRLHAKNMLALDCVTRYARILENV 605 (1106)
Q Consensus 561 AI~~LLs-DpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLyesl 605 (1106)
+|.++++ +++. ++...+++++.+..+.+...+..+..-++..
T Consensus 520 AI~~AL~M~~~E---r~~r~~~~~~~V~~~d~~~Wa~~fl~~L~~~ 562 (934)
T PLN03064 520 SIAQALNMPEEE---REKRHRHNFMHVTTHTAQEWAETFVSELNDT 562 (934)
T ss_pred HHHHHHhCCHHH---HHHHHHHHHhhcccCCHHHHHHHHHHHHHHH
Confidence 9999999 4444 5777889999999888888787776666554
No 95
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.35 E-value=1e-11 Score=149.24 Aligned_cols=165 Identities=12% Similarity=0.152 Sum_probs=142.4
Q ss_pred EEEEEc--ccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCC-ccHHHHHHHHHHcCCC--------
Q 001292 413 VVVVVG--SSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTD-GYNDALQEVASRLGLL-------- 481 (1106)
Q Consensus 413 VIL~VG--Rl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~Gpe-rY~eeLkeLaeklGL~-------- 481 (1106)
.+++++ |+ + .|..+.+++|+.++..++ |+++ |.+.|.+.+ .+.+.++++++++++.
T Consensus 321 ~~I~v~idrL-~----ek~~~~~I~av~~~~~~~-------p~~~-L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~ 387 (519)
T TIGR03713 321 TEIGFWIDGL-S----DEELQQILQQLLQYILKN-------PDYE-LKILTYNNDNDITQLLEDILEQINEEYNQDKNFF 387 (519)
T ss_pred eEEEEEcCCC-C----hHHHHHHHHHHHHHHhhC-------CCeE-EEEEEecCchhHHHHHHHHHHHHHhhhchhhhcc
Confidence 567777 88 7 889999999998887544 8988 688898763 3467788888888776
Q ss_pred ---------------------CCcEEEcCChh--hHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCch
Q 001292 482 ---------------------EHSVRHYGFNG--DVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIK 538 (1106)
Q Consensus 482 ---------------------d~rV~flG~~e--DL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~ 538 (1106)
+ +|.|.|... ++.+.|..+.++|.+|..| +|+ +++||++.|+|+| .-|..
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~-~v~f~gy~~e~dl~~~~~~arl~id~s~~e--g~~-~~ieAiS~GiPqI---nyg~~ 460 (519)
T TIGR03713 388 SLSEQDENQPILQTDEEQKEKE-RIAFTTLTNEEDLISALDKLRLIIDLSKEP--DLY-TQISGISAGIPQI---NKVET 460 (519)
T ss_pred ccchhhhhhhcccchhhccccc-EEEEEecCCHHHHHHHHhhheEEEECCCCC--ChH-HHHHHHHcCCCee---ecCCc
Confidence 5 899999776 9999999999999999986 999 9999999999999 44569
Q ss_pred hhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 001292 539 EYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARIL 602 (1106)
Q Consensus 539 EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLy 602 (1106)
++|.|++||+|+ +|..+|+++|..+|.+++. ..++...+.+.++++...+++.++.+++
T Consensus 461 ~~V~d~~NG~li--~d~~~l~~al~~~L~~~~~---wn~~~~~sy~~~~~yS~~~i~~kW~~~~ 519 (519)
T TIGR03713 461 DYVEHNKNGYII--DDISELLKALDYYLDNLKN---WNYSLAYSIKLIDDYSSENIIERLNELI 519 (519)
T ss_pred eeeEcCCCcEEe--CCHHHHHHHHHHHHhCHHH---HHHHHHHHHHHHHHhhHHHHHHHHHhhC
Confidence 999999999999 7999999999999999987 4888999999998888888888887753
No 96
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.21 E-value=1.4e-08 Score=117.07 Aligned_cols=299 Identities=17% Similarity=0.224 Sum_probs=182.6
Q ss_pred CChhHHHHHHHHHHHHHCCCE-EEEEEcCCCC-------------------------c---hH---HHHHHhHHHHHhhc
Q 001292 234 KDSRSLLLITVVKNLQKLGYV-FKIYAVRSGN-------------------------S---HS---LWEQIAGQISILGQ 281 (1106)
Q Consensus 234 ~gGesl~vv~LakaLqe~Gye-VtV~t~~dg~-------------------------~---~~---i~r~lg~lvkiIr~ 281 (1106)
.+|-.-.+..+++.|.++|++ |.++...++. . .. .+..+....++++.
T Consensus 10 TGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~a~~il~~ 89 (357)
T COG0707 10 TGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQYGIEFELIPSGGLRRKGSLKLLKAPFKLLKGVLQARKILKK 89 (357)
T ss_pred CccchhHHHHHHHHHHhhCccEEEEecccccceeeeccccCceEEEEecccccccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667788999999999994 6666432211 0 11 12222336778899
Q ss_pred cCccEEEE-ccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEec
Q 001292 282 EQYSLIDW-SIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFP 360 (1106)
Q Consensus 282 ~~pDiIh~-~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~ 360 (1106)
.+||++-. ..|.+.... ++.+ ..++|++.+-.|..... . .++.+ +.++.|...
T Consensus 90 ~kPd~vig~Ggyvs~P~~-~Aa~----------~~~iPv~ihEqn~~~G~------a---nk~~~------~~a~~V~~~ 143 (357)
T COG0707 90 LKPDVVIGTGGYVSGPVG-IAAK----------LLGIPVIIHEQNAVPGL------A---NKILS------KFAKKVASA 143 (357)
T ss_pred cCCCEEEecCCccccHHH-HHHH----------hCCCCEEEEecCCCcch------h---HHHhH------Hhhceeeec
Confidence 99997766 444443333 3332 26799998766642110 0 12222 234444433
Q ss_pred CCChhhhhcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHHHh
Q 001292 361 DYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPL 440 (1106)
Q Consensus 361 S~~~~~~~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~L 440 (1106)
... ...+.+.+++.++.+ ++.. .|... .....+..... ++++|+++|. .-|...+-+++..+
T Consensus 144 f~~---~~~~~~~~~~~~tG~-Pvr~----~~~~~-~~~~~~~~~~~--~~~~ilV~GG-------S~Ga~~ln~~v~~~ 205 (357)
T COG0707 144 FPK---LEAGVKPENVVVTGI-PVRP----EFEEL-PAAEVRKDGRL--DKKTILVTGG-------SQGAKALNDLVPEA 205 (357)
T ss_pred ccc---ccccCCCCceEEecC-cccH----Hhhcc-chhhhhhhccC--CCcEEEEECC-------cchhHHHHHHHHHH
Confidence 322 123455567778776 6764 33321 12222222222 6777887774 22444444444444
Q ss_pred HHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHH
Q 001292 441 LIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIV 520 (1106)
Q Consensus 441 l~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLL 520 (1106)
.... . .+++++.++|... . +.++..-.+++. +.+.++.++|..+|++||++|.= ..++++-
T Consensus 206 ~~~l----~--~~~~v~~~~G~~~-~--~~~~~~~~~~~~----~~v~~f~~dm~~~~~~ADLvIsR------aGa~Ti~ 266 (357)
T COG0707 206 LAKL----A--NRIQVIHQTGKND-L--EELKSAYNELGV----VRVLPFIDDMAALLAAADLVISR------AGALTIA 266 (357)
T ss_pred HHHh----h--hCeEEEEEcCcch-H--HHHHHHHhhcCc----EEEeeHHhhHHHHHHhccEEEeC------CcccHHH
Confidence 3322 1 1456667777765 2 445444443332 88889999999999999999954 5579999
Q ss_pred HHHHhCCCEEecCCCC--------chhhhccCCeEEEEcCCC--HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhc
Q 001292 521 RAMTFGIPVITPDFPI--------IKEYVAEGAQVIFFQKDN--PEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNML 590 (1106)
Q Consensus 521 EAMA~G~PVIASD~gG--------I~EiV~Dg~nG~LV~~~D--~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~f 590 (1106)
|..++|+|+|.-..+. ....+.+...|.+++..+ ++.+++.|.+++++++. .++|++++++......
T Consensus 267 E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~---l~~m~~~a~~~~~p~a 343 (357)
T COG0707 267 ELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLSNPEK---LKAMAENAKKLGKPDA 343 (357)
T ss_pred HHHHhCCCEEEeCCCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhcCHHH---HHHHHHHHHhcCCCCH
Confidence 9999999999875543 334565656777776544 88999999999999887 6889999888776655
Q ss_pred HHHHHHHH
Q 001292 591 ALDCVTRY 598 (1106)
Q Consensus 591 see~v~~Y 598 (1106)
..+.++..
T Consensus 344 a~~i~~~~ 351 (357)
T COG0707 344 AERIADLL 351 (357)
T ss_pred HHHHHHHH
Confidence 55544433
No 97
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.12 E-value=1.2e-08 Score=117.54 Aligned_cols=275 Identities=12% Similarity=0.121 Sum_probs=164.8
Q ss_pred CCChhHHHHHHHHHHHHHCCCEEEEEEcCCCC-------------------chH--HHH----------HHhHHHHHhhc
Q 001292 233 AKDSRSLLLITVVKNLQKLGYVFKIYAVRSGN-------------------SHS--LWE----------QIAGQISILGQ 281 (1106)
Q Consensus 233 ~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~-------------------~~~--i~r----------~lg~lvkiIr~ 281 (1106)
+.||--...+.+++.|++.||+|.+++...+. ... .++ ......++++.
T Consensus 10 GTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 89 (352)
T PRK12446 10 GSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMKGVMDAYVRIRK 89 (352)
T ss_pred CcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccCcCCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44666778899999999999999998753321 000 111 11114567888
Q ss_pred cCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhH-HhHHHHHHHHhccccEEEec
Q 001292 282 EQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGF-QNLLSYWKSVFSRVNVIVFP 360 (1106)
Q Consensus 282 ~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gl-eklis~~~~~l~~AD~VIa~ 360 (1106)
.+||+|+.+.....+-..++.+. .++|++++-.+.. + +. .++. ...++.++..
T Consensus 90 ~kPdvvi~~Ggy~s~p~~~aa~~----------~~~p~~i~e~n~~--------~--g~~nr~~------~~~a~~v~~~ 143 (352)
T PRK12446 90 LKPDVIFSKGGFVSVPVVIGGWL----------NRVPVLLHESDMT--------P--GLANKIA------LRFASKIFVT 143 (352)
T ss_pred cCCCEEEecCchhhHHHHHHHHH----------cCCCEEEECCCCC--------c--cHHHHHH------HHhhCEEEEE
Confidence 99999998764443434455543 6799987644321 0 11 2222 2345555432
Q ss_pred CCChhhhhcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHHHh
Q 001292 361 DYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPL 440 (1106)
Q Consensus 361 S~~~~~~~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~L 440 (1106)
.... ...++.+++.++++ ++.. .|... .+...++.+++.+++++|+.+|... |...+-+++..+
T Consensus 144 -f~~~--~~~~~~~k~~~tG~-Pvr~----~~~~~-~~~~~~~~~~l~~~~~~iLv~GGS~-------Ga~~in~~~~~~ 207 (352)
T PRK12446 144 -FEEA--AKHLPKEKVIYTGS-PVRE----EVLKG-NREKGLAFLGFSRKKPVITIMGGSL-------GAKKINETVREA 207 (352)
T ss_pred -ccch--hhhCCCCCeEEECC-cCCc----ccccc-cchHHHHhcCCCCCCcEEEEECCcc-------chHHHHHHHHHH
Confidence 2211 23455567878776 6764 33221 2345567788888888888887422 233333333333
Q ss_pred HHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCCh-hhHHHHHHHcCeEEEccCCCCCCCcHHH
Q 001292 441 LIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFN-GDVNGVLLMADIVLYGSSQVEQGFPSLI 519 (1106)
Q Consensus 441 l~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~-eDL~~LyaaADVfV~PS~~EeEGFGlvL 519 (1106)
+... . .++++++++|.... +... .. .. .+...++. +++..+|+.||++|.- +.+.++
T Consensus 208 l~~l---~---~~~~vv~~~G~~~~---~~~~---~~--~~--~~~~~~f~~~~m~~~~~~adlvIsr------~G~~t~ 265 (352)
T PRK12446 208 LPEL---L---LKYQIVHLCGKGNL---DDSL---QN--KE--GYRQFEYVHGELPDILAITDFVISR------AGSNAI 265 (352)
T ss_pred HHhh---c---cCcEEEEEeCCchH---HHHH---hh--cC--CcEEecchhhhHHHHHHhCCEEEEC------CChhHH
Confidence 3221 1 23566777886531 2221 11 12 34556877 6899999999998854 557999
Q ss_pred HHHHHhCCCEEecCCC---------CchhhhccCCeEEEEcC--CCHHHHHHHHHHHHhCccc
Q 001292 520 VRAMTFGIPVITPDFP---------IIKEYVAEGAQVIFFQK--DNPEGLSRAFSLFISNGKL 571 (1106)
Q Consensus 520 LEAMA~G~PVIASD~g---------GI~EiV~Dg~nG~LV~~--~D~eeLAeAI~~LLsDpel 571 (1106)
.|++++|+|.|.-... ...+.+.+...+..+.. -+++.|+++|..+++|++.
T Consensus 266 ~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~~~ 328 (352)
T PRK12446 266 FEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHNNEK 328 (352)
T ss_pred HHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcCHHH
Confidence 9999999999987542 12345545445555533 2588999999999988765
No 98
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.04 E-value=2.2e-08 Score=119.94 Aligned_cols=302 Identities=14% Similarity=0.140 Sum_probs=157.0
Q ss_pred cEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcc-----------cccchhhhhhhH---HhHHHHH---
Q 001292 285 SLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSL-----------ANRLPVYVERGF---QNLLSYW--- 347 (1106)
Q Consensus 285 DiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~L-----------s~r~~~Y~~~gl---eklis~~--- 347 (1106)
-+.|+|-++..+...+..+.. ..+..|+|.|.-.+ -+.+..|..... ..+..++
T Consensus 145 ViaHfHEWmaG~gll~lr~~~---------~~VaTvFTTHAT~lGR~l~~~~~~~Y~~L~~~~~d~eA~~~~i~~k~~iE 215 (633)
T PF05693_consen 145 VIAHFHEWMAGVGLLYLRKRK---------PDVATVFTTHATLLGRYLAANNKDFYNNLDKFNGDQEAGERNIYHKHSIE 215 (633)
T ss_dssp EEEEEESGGGTTHHHHHHHTT----------SCEEEEEESS-HHHHHHTTTSS-TTTSGTTS-HHHHHHHTT-HHHHHHH
T ss_pred EEEEechHhHhHHHHHHhccC---------CCeeEEEEecccchhhHhhcCCCcHHHHhhccCccccccCccchHHHHHH
Confidence 367999988776555555433 46788999998222 122222211111 1111111
Q ss_pred HHHhccccEEEecCCChhhh-hcCCCCCCEEEeCCCCCCcccccccCcchh--------HHH----HHHHc----CCCCC
Q 001292 348 KSVFSRVNVIVFPDYTLPML-YSVLDAGNFFVIPGSPADVWAVEAYSKSHE--------KYQ----LRKEN----GFLKD 410 (1106)
Q Consensus 348 ~~~l~~AD~VIa~S~~~~~~-~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s--------~~~----LR~~l----GL~~d 410 (1106)
+.+...||+..++|.-.... ..-+....=.|+|| |+|. +.|+..++ ++. ++..+ .+..+
T Consensus 216 raaA~~AdvFTTVSeITa~Ea~~LL~r~pDvV~pN-Gl~v---~~~~~~~efqnl~~~~k~ki~~fv~~~f~g~~dfd~d 291 (633)
T PF05693_consen 216 RAAAHYADVFTTVSEITAKEAEHLLKRKPDVVTPN-GLNV---DKFPALHEFQNLHAKAKEKIHEFVRGHFYGHYDFDLD 291 (633)
T ss_dssp HHHHHHSSEEEESSHHHHHHHHHHHSS--SEE-----B-G---GGTSSTTHHHHHHHHHHHHHHHHHHHHSTT---S-GG
T ss_pred HHHHHhcCeeeehhhhHHHHHHHHhCCCCCEEcCC-Cccc---cccccchHHHHHHHHHHHHHHHHHHHHhcccCCCCcc
Confidence 23456889988888543333 11122222267787 8998 44444321 111 12222 23334
Q ss_pred -cEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCcc----------HHHHHHHHH---
Q 001292 411 -EIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGY----------NDALQEVAS--- 476 (1106)
Q Consensus 411 -~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY----------~eeLkeLae--- 476 (1106)
..+|...||..+ .+||.+.+|+|+.+|.......... -.+..+||++.....+ ..+++.-+.
T Consensus 292 ~tl~~ftsGRYEf---~NKG~D~fieAL~rLn~~lk~~~~~-~tVVaFii~pa~~~~~~ve~l~~~a~~~~l~~t~~~i~ 367 (633)
T PF05693_consen 292 KTLYFFTSGRYEF---RNKGIDVFIEALARLNHRLKQAGSD-KTVVAFIIVPAKTNSFNVESLKGQAVTKQLRDTVDEIQ 367 (633)
T ss_dssp GEEEEEEESSS-T---TTTTHHHHHHHHHHHHHHHHHTT-S--EEEEEEE---SEEEE-HHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeeeceee---ecCCccHHHHHHHHHHHHHhhcCCC-CeEEEEEEecCccCCcCHHHHhhHHHHHHHHHHHHHHH
Confidence 445555676443 4899999999999987544222221 2222346666543322 111111111
Q ss_pred -H---------------------------------------------------------------cCC----CC-CcEEE
Q 001292 477 -R---------------------------------------------------------------LGL----LE-HSVRH 487 (1106)
Q Consensus 477 -k---------------------------------------------------------------lGL----~d-~rV~f 487 (1106)
+ +++ .+ .+|+|
T Consensus 368 ~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~lkr~i~~~~r~~lPPi~TH~l~d~~~DpILn~irr~~L~N~~~drVKVIF 447 (633)
T PF05693_consen 368 EKIGKRLFESCLSGRLPDLNELLDKEDIVRLKRCIFALQRNSLPPITTHNLHDDSNDPILNMIRRLGLFNNPEDRVKVIF 447 (633)
T ss_dssp HHHHHHHHHHHHHSSS-SHHHCS-HHHHHHHHHHHHTT--T----SBSEEETTTTT-HHHHHHHHTT----TT-SEEEEE
T ss_pred HHHHHHHHHHHhCCCCCChHHhcChhhHHHHHHHHHHhccCCCCCeeeeCCCCCccCHHHHHHHhCCCCCCCCCceEEEE
Confidence 1 111 22 24566
Q ss_pred cC---------ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhcc-----CCeEEEE-cC
Q 001292 488 YG---------FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAE-----GAQVIFF-QK 552 (1106)
Q Consensus 488 lG---------~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~D-----g~nG~LV-~~ 552 (1106)
.+ +.-+..+++..||+.|+||.+| ++|.+++|+.|+|+|.|+||..|..-.+.+ ...|+.+ +-
T Consensus 448 ~P~yL~~~dgif~l~Y~dfv~GcdLgvFPSYYE--PWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR 525 (633)
T PF05693_consen 448 HPEYLSGTDGIFNLDYYDFVRGCDLGVFPSYYE--PWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDR 525 (633)
T ss_dssp --S---TTSSSS-S-HHHHHHHSSEEEE--SSB--SS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-S
T ss_pred eeccccCCCCCCCCCHHHHhccCceeeeccccc--cccCChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeC
Confidence 65 1235789999999999999998 999999999999999999999987644432 3356654 22
Q ss_pred --CCHHHHHHHHH----HHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhc
Q 001292 553 --DNPEGLSRAFS----LFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILENVLN 607 (1106)
Q Consensus 553 --~D~eeLAeAI~----~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLyeslLk 607 (1106)
.+.++.+++|. .+..-... .+..+.+++.+.++...|.+....|.+.|...+.
T Consensus 526 ~~~n~~e~v~~la~~l~~f~~~~~r--qri~~Rn~ae~LS~~~dW~~~~~yY~~Ay~~AL~ 584 (633)
T PF05693_consen 526 RDKNYDESVNQLADFLYKFCQLSRR--QRIIQRNRAERLSDLADWKNFGKYYEKAYDLALR 584 (633)
T ss_dssp SSS-HHHHHHHHHHHHHHHHT--HH--HHHHHHHHHHHHGGGGBHHHHCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 34555555544 44443332 2556677888888888898888888888876665
No 99
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.01 E-value=5e-08 Score=119.41 Aligned_cols=184 Identities=10% Similarity=0.006 Sum_probs=134.2
Q ss_pred CCCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCc------cHHHHHHHHHHcCC
Q 001292 407 FLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDG------YNDALQEVASRLGL 480 (1106)
Q Consensus 407 L~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~Gper------Y~eeLkeLaeklGL 480 (1106)
+.++.+++++++|+.. .|+.++++.++..+..-. .+...+++ +|++|.+... +...+.+++++..+
T Consensus 385 ~dpd~~~ig~v~Rl~~----yKr~dLil~~i~~l~~i~---~~~~~pvq-~V~~Gka~p~d~~gk~~i~~i~~la~~~~~ 456 (601)
T TIGR02094 385 LDPDVLTIGFARRFAT----YKRADLIFRDLERLARIL---NNPERPVQ-IVFAGKAHPADGEGKEIIQRIVEFSKRPEF 456 (601)
T ss_pred cCCCCcEEEEEEcchh----hhhHHHHHHHHHHHHHHh---hCCCCCeE-EEEEEecCcccchHHHHHHHHHHHHhcccC
Confidence 4578889999999998 889999999987776311 11113566 6889987644 56777777775456
Q ss_pred CCCcEEEc-CChhh-HHHHHHHcCeEEE-ccC-CCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcC----
Q 001292 481 LEHSVRHY-GFNGD-VNGVLLMADIVLY-GSS-QVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQK---- 552 (1106)
Q Consensus 481 ~d~rV~fl-G~~eD-L~~LyaaADVfV~-PS~-~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~---- 552 (1106)
++ +|.|+ ++... ...+++.||++++ ||. +| ..|++-+-||..|.+.+++--|...|.. ++.||+.+..
T Consensus 457 ~~-kv~f~~~Yd~~lA~~i~aG~Dv~L~~Psr~~E--acGtsqMka~~nGgL~~sv~DG~~~E~~-~~~nGf~f~~~~~~ 532 (601)
T TIGR02094 457 RG-RIVFLENYDINLARYLVSGVDVWLNNPRRPLE--ASGTSGMKAAMNGVLNLSILDGWWGEGY-DGDNGWAIGDGEEY 532 (601)
T ss_pred CC-CEEEEcCCCHHHHHHHhhhheeEEeCCCCCcC--CchHHHHHHHHcCCceeecccCcccccC-CCCcEEEECCCccc
Confidence 65 67765 55544 5689999999999 988 86 9999999999999999999877777766 5679999983
Q ss_pred --------CCHHHHHHHHHHHH-----hCccc--HHHHHHHHHHHHHHH-HHhcHHHHHHHHHHHH
Q 001292 553 --------DNPEGLSRAFSLFI-----SNGKL--SKFARTVASAGRLHA-KNMLALDCVTRYARIL 602 (1106)
Q Consensus 553 --------~D~eeLAeAI~~LL-----sDpel--Rk~r~~mGe~Are~a-ke~fsee~v~~Y~eLy 602 (1106)
.|+++|.++|.+.+ ++++. .+.-.+|.+++.... ..+.|..++..|.++|
T Consensus 533 ~~~~~~d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 533 DDEEEQDRLDAEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKF 598 (601)
T ss_pred cccccccCCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHh
Confidence 78899999886654 33221 001245555555543 3456677778999887
No 100
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=98.92 E-value=5.5e-09 Score=96.68 Aligned_cols=89 Identities=26% Similarity=0.363 Sum_probs=77.8
Q ss_pred eEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHH
Q 001292 503 IVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAG 582 (1106)
Q Consensus 503 VfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~A 582 (1106)
+++.|+... +++..++|+||||+|||+.+.+++.+++.++.++++++ |+++++++|..+++||+. +++++++|
T Consensus 1 i~Ln~~~~~--~~~~r~~E~~a~G~~vi~~~~~~~~~~~~~~~~~~~~~--~~~el~~~i~~ll~~~~~---~~~ia~~a 73 (92)
T PF13524_consen 1 INLNPSRSD--GPNMRIFEAMACGTPVISDDSPGLREIFEDGEHIITYN--DPEELAEKIEYLLENPEE---RRRIAKNA 73 (92)
T ss_pred CEeeCCCCC--CCchHHHHHHHCCCeEEECChHHHHHHcCCCCeEEEEC--CHHHHHHHHHHHHCCHHH---HHHHHHHH
Confidence 456777765 99999999999999999999999999999998998886 999999999999999998 69999999
Q ss_pred HHHHHHhcH-HHHHHHH
Q 001292 583 RLHAKNMLA-LDCVTRY 598 (1106)
Q Consensus 583 re~ake~fs-ee~v~~Y 598 (1106)
++.++++++ ...++++
T Consensus 74 ~~~v~~~~t~~~~~~~i 90 (92)
T PF13524_consen 74 RERVLKRHTWEHRAEQI 90 (92)
T ss_pred HHHHHHhCCHHHHHHHH
Confidence 999997665 4444454
No 101
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=98.85 E-value=5.3e-07 Score=107.17 Aligned_cols=287 Identities=10% Similarity=0.045 Sum_probs=186.8
Q ss_pred cEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCC-cccccchhhhhhhHHhHHHHHHHHhccccEEEecCCC
Q 001292 285 SLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQED-SLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYT 363 (1106)
Q Consensus 285 DiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna-~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~~ 363 (1106)
|+|-+|.|...++.....+.. ...++-+..|-- +..+-+...|. -+. ....+-.+|.|-+++..
T Consensus 125 D~VWVHDYhL~llp~~LR~~~---------~~~~IgFFlHiPFPs~eifr~LP~--r~e----il~glL~aDlIGFqt~~ 189 (474)
T PRK10117 125 DIIWIHDYHLLPFASELRKRG---------VNNRIGFFLHIPFPTPEIFNALPP--HDE----LLEQLCDYDLLGFQTEN 189 (474)
T ss_pred CEEEEeccHhhHHHHHHHHhC---------CCCcEEEEEeCCCCChHHHhhCCC--hHH----HHHHHHhCccceeCCHH
Confidence 577779999888887776543 455677776762 11110000010 011 12334578888888755
Q ss_pred hhhh-------hcCCCC---------CC---EEEeCCCCCCcccccccCcc------hhHHHHHHHcCCCCCcEEEEEEc
Q 001292 364 LPML-------YSVLDA---------GN---FFVIPGSPADVWAVEAYSKS------HEKYQLRKENGFLKDEIVVVVVG 418 (1106)
Q Consensus 364 ~~~~-------~~gi~~---------~K---I~VIpN~GVDl~~~e~F~ps------~s~~~LR~~lGL~~d~~VIL~VG 418 (1106)
.... ..+... ++ +.+.| +|||. +.|... .....+++.++ ++.+|+.+.
T Consensus 190 y~rnFl~~~~~~lg~~~~~~~~v~~~gr~v~v~~~P-igID~---~~~~~~a~~~~~~~~~~lr~~~~---~~~lilgVD 262 (474)
T PRK10117 190 DRLAFLDCLSNLTRVTTRSGKSHTAWGKAFRTEVYP-IGIEP---DEIAKQAAGPLPPKLAQLKAELK---NVQNIFSVE 262 (474)
T ss_pred HHHHHHHHHHHHcCCcccCCCeEEECCeEEEEEEEE-CeEcH---HHHHHHhhchHHHHHHHHHHHcC---CCeEEEEec
Confidence 4432 111110 11 22334 67887 343221 12245566654 567999999
Q ss_pred ccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCC----CC--ccHHHHHHHHHHcCC----CC-CcEEE
Q 001292 419 SSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNS----TD--GYNDALQEVASRLGL----LE-HSVRH 487 (1106)
Q Consensus 419 Rl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~G----pe--rY~eeLkeLaeklGL----~d-~rV~f 487 (1106)
|+.. .||...-+.|+..+++.+++.. .++.|+-|+... ++ .+..++++++.+.+- .+ .-|++
T Consensus 263 RLDy----tKGi~~rl~Afe~fL~~~Pe~~---gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y 335 (474)
T PRK10117 263 RLDY----SKGLPERFLAYEALLEKYPQHH---GKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPLYY 335 (474)
T ss_pred cccc----ccCHHHHHHHHHHHHHhChhhc---CCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeEEE
Confidence 9998 8899999999999998876554 345543333221 11 123455555554322 11 12555
Q ss_pred cC---ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCC-----CEEecCCCCchhhhccCCeEEEEcCCCHHHHH
Q 001292 488 YG---FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGI-----PVITPDFPIIKEYVAEGAQVIFFQKDNPEGLS 559 (1106)
Q Consensus 488 lG---~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~-----PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLA 559 (1106)
+. +.+++..+|..|||+++++..+ |.-++..|+.||.. ++|.|.+.|..+.+. ..++++|.|++++|
T Consensus 336 ~~~~~~~~~l~alyr~ADv~lVTplRD--GMNLVAkEyva~q~~~~~GvLILSefAGaA~~L~---~AllVNP~d~~~~A 410 (474)
T PRK10117 336 LNQHFDRKLLMKIFRYSDVGLVTPLRD--GMNLVAKEYVAAQDPANPGVLVLSQFAGAANELT---SALIVNPYDRDEVA 410 (474)
T ss_pred ecCCCCHHHHHHHHHhccEEEeccccc--ccccccchheeeecCCCCccEEEecccchHHHhC---CCeEECCCCHHHHH
Confidence 44 4578999999999999999997 99999999999976 388999999999993 47899999999999
Q ss_pred HHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhc
Q 001292 560 RAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILENVLN 607 (1106)
Q Consensus 560 eAI~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLyeslLk 607 (1106)
++|.+.++-|.. ++++--+..++.+..+.....+..+..-+..+..
T Consensus 411 ~Ai~~AL~Mp~~--Er~~R~~~l~~~v~~~dv~~W~~~fL~~L~~~~~ 456 (474)
T PRK10117 411 AALDRALTMPLA--ERISRHAEMLDVIVKNDINHWQECFISDLKQIVP 456 (474)
T ss_pred HHHHHHHcCCHH--HHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhhh
Confidence 999999998874 3455556667778777777777777776666543
No 102
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=98.83 E-value=5.2e-07 Score=107.82 Aligned_cols=291 Identities=12% Similarity=0.090 Sum_probs=162.5
Q ss_pred HhhccCc-cEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccE
Q 001292 278 ILGQEQY-SLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNV 356 (1106)
Q Consensus 278 iIr~~~p-DiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~ 356 (1106)
++...++ |+|-+|.|...++..+..+.. ...++.+..|-- +...-.+...+..+. ....+-.||.
T Consensus 135 i~~~~~~~D~VWVhDYhL~llP~~LR~~~---------~~~~IgfFlHiP-FPs~e~fr~lP~r~e----iL~glL~aDl 200 (474)
T PF00982_consen 135 IAEVYRPGDLVWVHDYHLMLLPQMLRERG---------PDARIGFFLHIP-FPSSEIFRCLPWREE----ILRGLLGADL 200 (474)
T ss_dssp HGGG--TT-EEEEESGGGTTHHHHHHHTT-----------SEEEEEE-S-----HHHHTTSTTHHH----HHHHHTTSSE
T ss_pred HHHhCcCCCEEEEeCCcHHHHHHHHHhhc---------CCceEeeEEecC-CCCHHHHhhCCcHHH----HHHHhhcCCE
Confidence 3333344 477779999888888777543 457788777772 110000001100122 2233558999
Q ss_pred EEecCCChhhh-------hcCC--CC--------CC---EEEeCCCCCCcccccccCcc-------hhHHHHHHHcCCCC
Q 001292 357 IVFPDYTLPML-------YSVL--DA--------GN---FFVIPGSPADVWAVEAYSKS-------HEKYQLRKENGFLK 409 (1106)
Q Consensus 357 VIa~S~~~~~~-------~~gi--~~--------~K---I~VIpN~GVDl~~~e~F~ps-------~s~~~LR~~lGL~~ 409 (1106)
|-+++...... ..+. .. ++ +.+.| .|||. +.|... .....++++++ .
T Consensus 201 IgFqt~~~~~nFl~~~~r~lg~~~~~~~~~v~~~Gr~v~v~~~p-igId~---~~~~~~~~~~~v~~~~~~l~~~~~--~ 274 (474)
T PF00982_consen 201 IGFQTFEYARNFLSCCKRLLGLEVDSDRGTVEYNGRRVRVGVFP-IGIDP---DAFAQLARSPEVQERAEELREKFK--G 274 (474)
T ss_dssp EEESSHHHHHHHHHHHHHHS-EEEEETTE-EEETTEEEEEEE-------H---HHHHHHHH-S---HHHHHHHHHTT--T
T ss_pred EEEecHHHHHHHHHHHHHHcCCcccCCCceEEECCEEEEEEEee-ccCCh---HHHHhhccChHHHHHHHHHHHhcC--C
Confidence 99988654433 1111 11 11 22334 68887 444321 12345666664 2
Q ss_pred CcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcC--CCC-----ccHHHHHHHHHH----c
Q 001292 410 DEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGN--STD-----GYNDALQEVASR----L 478 (1106)
Q Consensus 410 d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~--Gpe-----rY~eeLkeLaek----l 478 (1106)
+..+|+.+.|+.. .||...-+.|+.++++++++.. .++.| +-++. ... .+..++.+++.+ +
T Consensus 275 ~~~ii~gvDrld~----~kGi~~kl~Afe~fL~~~P~~~---~kv~l-iQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~ 346 (474)
T PF00982_consen 275 KRKIIVGVDRLDY----TKGIPEKLRAFERFLERYPEYR---GKVVL-IQIAVPSREDVPEYQELRREVEELVGRINGKY 346 (474)
T ss_dssp -SEEEEEE--B-G----GG-HHHHHHHHHHHHHH-GGGT---TTEEE-EEE--B-STTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEeccchh----hcCHHHHHHHHHHHHHhCcCcc---CcEEE-EEEeeccCccchhHHHHHHHHHHHHHHHHhhc
Confidence 3579999999988 8999999999999999887654 35554 33332 111 123455555543 3
Q ss_pred CCCC-CcEEEc-C--ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCC----EEecCCCCchhhhccCCeEEEE
Q 001292 479 GLLE-HSVRHY-G--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIP----VITPDFPIIKEYVAEGAQVIFF 550 (1106)
Q Consensus 479 GL~d-~rV~fl-G--~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~P----VIASD~gGI~EiV~Dg~nG~LV 550 (1106)
|-.+ +-|.+. + +.+++..+|..||+++++|..+ |.-++..|+.||..+ +|.|.+.|..+.+.+ ..+++
T Consensus 347 g~~~~~PI~~~~~~~~~~~~~aly~~aDv~lvTslrD--GmNLva~Eyva~q~~~~GvLiLSefaGaa~~L~~--~al~V 422 (474)
T PF00982_consen 347 GTPDWTPIIYIYRSLSFEELLALYRAADVALVTSLRD--GMNLVAKEYVACQDDNPGVLILSEFAGAAEQLSE--AALLV 422 (474)
T ss_dssp -BTTB-SEEEE-S---HHHHHHHHHH-SEEEE--SSB--S--HHHHHHHHHS-TS--EEEEETTBGGGGT-TT--S-EEE
T ss_pred ccCCceeEEEEecCCCHHHHHHHHHhhhhEEecchhh--ccCCcceEEEEEecCCCCceEeeccCCHHHHcCC--ccEEE
Confidence 3221 124444 4 5588999999999999999997 999999999999876 888999999999943 45899
Q ss_pred cCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 001292 551 QKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARIL 602 (1106)
Q Consensus 551 ~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLy 602 (1106)
+|.|++++|++|...++-+.. +++..-+..++.+.++.....++.+.+-+
T Consensus 423 NP~d~~~~A~ai~~AL~M~~~--Er~~r~~~~~~~v~~~~~~~W~~~~l~~L 472 (474)
T PF00982_consen 423 NPWDIEEVADAIHEALTMPPE--ERKERHARLREYVREHDVQWWAESFLRDL 472 (474)
T ss_dssp -TT-HHHHHHHHHHHHT--HH--HHHHHHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHcCCHH--HHHHHHHHHHHHhHhCCHHHHHHHHHHHh
Confidence 999999999999999997763 34555556667777766666665554443
No 103
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.83 E-value=1.5e-06 Score=100.70 Aligned_cols=296 Identities=15% Similarity=0.119 Sum_probs=165.0
Q ss_pred CEEEEEeCCCCCChhHHHHHHHHHHHHHC-CCEEEEEEcCCCC-------chHHH-------------------------
Q 001292 223 PRIGLILGNMAKDSRSLLLITVVKNLQKL-GYVFKIYAVRSGN-------SHSLW------------------------- 269 (1106)
Q Consensus 223 ~RIalVlg~L~~gGesl~vv~LakaLqe~-GyeVtV~t~~dg~-------~~~i~------------------------- 269 (1106)
+||++|+|. -++-+-+.+++++|++. ++++.++.++... ...+.
T Consensus 1 ~ki~~v~Gt---Rpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (365)
T TIGR03568 1 KKICVVTGT---RADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEKDGFDIDEKIEILLDSDSNAGMAKS 77 (365)
T ss_pred CeEEEEEec---ChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHHHcCCCCCCccccccCCCCCCCHHHH
Confidence 356666654 34556677888888874 6776666543210 01110
Q ss_pred --HHHhHHHHHhhccCccEEEEcc-ccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHH
Q 001292 270 --EQIAGQISILGQEQYSLIDWSI-FDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSY 346 (1106)
Q Consensus 270 --r~lg~lvkiIr~~~pDiIh~~~-~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~ 346 (1106)
+.+..+.+++...+||++-.+. ....+...++... .+||++. +|+...+..... ....+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~----------~~IPv~H-veaG~rs~~~~e---E~~r~~i~- 142 (365)
T TIGR03568 78 MGLTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAAL----------LNIPIAH-IHGGEVTEGAID---ESIRHAIT- 142 (365)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHH----------hCCcEEE-EECCccCCCCch---HHHHHHHH-
Confidence 1111255677778888776665 4444555555532 6899884 455422111111 00012222
Q ss_pred HHHHhccccEEEecCCChhhh--hcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCC-cEEEEEEcccCcc
Q 001292 347 WKSVFSRVNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKD-EIVVVVVGSSFFY 423 (1106)
Q Consensus 347 ~~~~l~~AD~VIa~S~~~~~~--~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d-~~VIL~VGRl~~y 423 (1106)
+.++..++++...... ..+.++.++.+++|.++|... .+ .......+.+++|++++ .++++.+-+...
T Consensus 143 -----~la~l~f~~t~~~~~~L~~eg~~~~~i~~tG~~~iD~l~--~~-~~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~- 213 (365)
T TIGR03568 143 -----KLSHLHFVATEEYRQRVIQMGEDPDRVFNVGSPGLDNIL--SL-DLLSKEELEEKLGIDLDKPYALVTFHPVTL- 213 (365)
T ss_pred -----HHHhhccCCCHHHHHHHHHcCCCCCcEEEECCcHHHHHH--hh-hccCHHHHHHHhCCCCCCCEEEEEeCCCcc-
Confidence 2345556666544443 457778899999998888521 11 11124566778888644 443343322210
Q ss_pred ccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCC-CCCcEEEcCC--hhhHHHHHHH
Q 001292 424 NELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGL-LEHSVRHYGF--NGDVNGVLLM 500 (1106)
Q Consensus 424 ~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL-~d~rV~flG~--~eDL~~Lyaa 500 (1106)
...+..+.+.+.++.|.+ . +.++ +++.+.+... ...+.+.+..+.- .+ +|.+.++ ..++..++..
T Consensus 214 -~~~~~~~~l~~li~~L~~----~---~~~~--~vi~P~~~p~-~~~i~~~i~~~~~~~~-~v~l~~~l~~~~~l~Ll~~ 281 (365)
T TIGR03568 214 -EKESAEEQIKELLKALDE----L---NKNY--IFTYPNADAG-SRIINEAIEEYVNEHP-NFRLFKSLGQERYLSLLKN 281 (365)
T ss_pred -cccCchHHHHHHHHHHHH----h---ccCC--EEEEeCCCCC-chHHHHHHHHHhcCCC-CEEEECCCChHHHHHHHHh
Confidence 011222333333333221 1 1233 3455554322 1333333333321 23 7999995 4789999999
Q ss_pred cCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 501 ADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 501 ADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
||++|--|+ .|+ .||+++|+|||+ .++-+|.+..+.+.+++. .|++++.+++.++++
T Consensus 282 a~~vitdSS-----ggi--~EA~~lg~Pvv~--l~~R~e~~~~g~nvl~vg-~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 282 ADAVIGNSS-----SGI--IEAPSFGVPTIN--IGTRQKGRLRADSVIDVD-PDKEEIVKAIEKLLD 338 (365)
T ss_pred CCEEEEcCh-----hHH--HhhhhcCCCEEe--ecCCchhhhhcCeEEEeC-CCHHHHHHHHHHHhC
Confidence 999995543 233 899999999994 566778887787887774 689999999999543
No 104
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.81 E-value=4.3e-07 Score=106.31 Aligned_cols=299 Identities=16% Similarity=0.120 Sum_probs=168.2
Q ss_pred CChhHHHHHHHHHHHHH--CCCEEE---EEEcCCC------------------Cc--h-------HHHH-HH---hHHHH
Q 001292 234 KDSRSLLLITVVKNLQK--LGYVFK---IYAVRSG------------------NS--H-------SLWE-QI---AGQIS 277 (1106)
Q Consensus 234 ~gGesl~vv~LakaLqe--~GyeVt---V~t~~dg------------------~~--~-------~i~r-~l---g~lvk 277 (1106)
..||.+..+.++++|++ .|++|. ++....+ +. . .+.+ .+ .....
T Consensus 6 ghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~ip~~g~~~~~~sgg~~~~~~~~~~~~~~~gl~~~~~~~~~ 85 (396)
T TIGR03492 6 GHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGIPIIGPTKELPSGGFSYQSLRGLLRDLRAGLVGLTLGQWR 85 (396)
T ss_pred CchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCCCceeCCCCCCCCCCccCCCHHHHHHHHHhhHHHHHHHHHH
Confidence 35899999999999998 599999 5554221 10 0 1111 11 11345
Q ss_pred Hhhcc--CccEEEEc-cccHHHHHHHHHHHhhhhcccCCCCCCcEEE-EEcCCccc-------ccchhh-hhhhHH--hH
Q 001292 278 ILGQE--QYSLIDWS-IFDGIIADSLEAKEAISSLMQEPFHSIPLVW-IIQEDSLA-------NRLPVY-VERGFQ--NL 343 (1106)
Q Consensus 278 iIr~~--~pDiIh~~-~~~~i~v~~La~k~~idII~te~~~gIPVI~-tIHna~Ls-------~r~~~Y-~~~gle--kl 343 (1106)
+++.. ++++|-.. .+. ..+.++. .++|+++ ..|+.... .....| ...|.. -+
T Consensus 86 ~~~~~~~~p~~v~~~Gg~v----~~~aA~~----------~~~p~~~~~~~esn~~~~~~~~~~~~~~~~~~~G~~~~p~ 151 (396)
T TIGR03492 86 ALRKWAKKGDLIVAVGDIV----PLLFAWL----------SGKPYAFVGTAKSDYYWESGPRRSPSDEYHRLEGSLYLPW 151 (396)
T ss_pred HHHHHhhcCCEEEEECcHH----HHHHHHH----------cCCCceEEEeeccceeecCCCCCccchhhhccCCCccCHH
Confidence 66666 88866543 333 3233322 5778765 33553211 000001 001111 01
Q ss_pred HHHHHHHhccccEEEecCCChhhhhcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEE-cccCc
Q 001292 344 LSYWKSVFSRVNVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVV-GSSFF 422 (1106)
Q Consensus 344 is~~~~~l~~AD~VIa~S~~~~~~~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~V-GRl~~ 422 (1106)
..++-.-+.|+.|++........+... ..++.+++|.-.|. +.... + . ++.++.++++.+ |+...
T Consensus 152 -e~n~l~~~~a~~v~~~~~~t~~~l~~~-g~k~~~vGnPv~d~-----l~~~~-~----~--~l~~~~~~lllLpGSR~a 217 (396)
T TIGR03492 152 -ERWLMRSRRCLAVFVRDRLTARDLRRQ-GVRASYLGNPMMDG-----LEPPE-R----K--PLLTGRFRIALLPGSRPP 217 (396)
T ss_pred -HHHHhhchhhCEEeCCCHHHHHHHHHC-CCeEEEeCcCHHhc-----Ccccc-c----c--ccCCCCCEEEEECCCCHH
Confidence 112222357777777765544443221 13788888843342 21111 1 1 455454555554 43322
Q ss_pred cccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCC-------------CcEEEcC
Q 001292 423 YNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLE-------------HSVRHYG 489 (1106)
Q Consensus 423 y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d-------------~rV~flG 489 (1106)
+..++...+++++..|.+ . +++.|++.+..... .+.+++..++.++.. ..+.+..
T Consensus 218 --e~~~~lp~~l~al~~L~~-------~-~~~~~v~~~~~~~~--~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~ 285 (396)
T TIGR03492 218 --EAYRNLKLLLRALEALPD-------S-QPFVFLAAIVPSLS--LEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLL 285 (396)
T ss_pred --HHHccHHHHHHHHHHHhh-------C-CCeEEEEEeCCCCC--HHHHHHHHHhcCceecCCccccchhhccCceEEEe
Confidence 334466788888866631 2 56776666634443 367777666556531 1366667
Q ss_pred ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCc---hhhhcc-----CCeEEEEcCCCHHHHHHH
Q 001292 490 FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPII---KEYVAE-----GAQVIFFQKDNPEGLSRA 561 (1106)
Q Consensus 490 ~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI---~EiV~D-----g~nG~LV~~~D~eeLAeA 561 (1106)
+..++..+|+.||++|..| |.+..|+|++|+|+|....++. ..++.. + .+..+...+++.++++
T Consensus 286 ~~~~~~~~l~~ADlvI~rS-------Gt~T~E~a~lg~P~Ilip~~~~q~na~~~~~~~~l~g-~~~~l~~~~~~~l~~~ 357 (396)
T TIGR03492 286 GRGAFAEILHWADLGIAMA-------GTATEQAVGLGKPVIQLPGKGPQFTYGFAEAQSRLLG-GSVFLASKNPEQAAQV 357 (396)
T ss_pred chHhHHHHHHhCCEEEECc-------CHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhhHhhcC-CEEecCCCCHHHHHHH
Confidence 7788999999999999875 3455999999999999864332 122222 2 3334444678999999
Q ss_pred HHHHHhCcccHHHHHHHHHHHH
Q 001292 562 FSLFISNGKLSKFARTVASAGR 583 (1106)
Q Consensus 562 I~~LLsDpelRk~r~~mGe~Ar 583 (1106)
|..+++|++. +.+|.++++
T Consensus 358 l~~ll~d~~~---~~~~~~~~~ 376 (396)
T TIGR03492 358 VRQLLADPEL---LERCRRNGQ 376 (396)
T ss_pred HHHHHcCHHH---HHHHHHHHH
Confidence 9999999886 455654333
No 105
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=98.81 E-value=1.2e-09 Score=115.32 Aligned_cols=164 Identities=15% Similarity=0.089 Sum_probs=92.5
Q ss_pred ccceeeeecccCCC---CCccccccCCCCCCCCCCEEEEEeCCCCCChhHHHHHHHHHHHHHC--CCEEEEEEcCCCCch
Q 001292 192 FGSRLKFVPDQVGF---GNGLDGLRSTPRFGVRPPRIGLILGNMAKDSRSLLLITVVKNLQKL--GYVFKIYAVRSGNSH 266 (1106)
Q Consensus 192 ~ger~gf~~~~~~~---~~~~~ha~Sv~r~g~r~~RIalVlg~L~~gGesl~vv~LakaLqe~--GyeVtV~t~~dg~~~ 266 (1106)
|.||+|+...+... +.+|.||+|+ |+..++.+|+++|.++ |+.|.++++++++..
T Consensus 5 ~~eR~g~~~~~~~~~~~~~iWiHa~Sv--------------------GE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~ 64 (186)
T PF04413_consen 5 LKERLGFYPPPPPRKPGPLIWIHAASV--------------------GEVNAARPLIKRLRKQRPDLRILLTTTTPTGRE 64 (186)
T ss_dssp HHHHHS--GGGGGGT--T-EEEE-SSH--------------------HHHHHHHHHHHHHTT---TS-EEEEES-CCHHH
T ss_pred hHHhcCCCCCCCCCCCCCcEEEEECCH--------------------HHHHHHHHHHHHHHHhCCCCeEEEEecCCchHH
Confidence 79999998877643 7889999999 9999999999999998 999999999886655
Q ss_pred HHHHHHhHHHHHhhccCccEEEEccccHHHHHHHHHHHhhhhcccCC---------CCCCcEEEEEcCCcccccchhhhh
Q 001292 267 SLWEQIAGQISILGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEP---------FHSIPLVWIIQEDSLANRLPVYVE 337 (1106)
Q Consensus 267 ~i~r~lg~lvkiIr~~~pDiIh~~~~~~i~v~~La~k~~idII~te~---------~~gIPVI~tIHna~Ls~r~~~Y~~ 337 (1106)
...+.+...+ ...|.++|.......++..+.++.++ ++++|. ..+||++.. |++++.++..
T Consensus 65 ~~~~~~~~~v----~~~~~P~D~~~~~~rfl~~~~P~~~i-~~EtElWPnll~~a~~~~ip~~Lv--Narls~~s~~--- 134 (186)
T PF04413_consen 65 MARKLLPDRV----DVQYLPLDFPWAVRRFLDHWRPDLLI-WVETELWPNLLREAKRRGIPVVLV--NARLSERSFR--- 134 (186)
T ss_dssp HHHGG-GGG-----SEEE---SSHHHHHHHHHHH--SEEE-EES----HHHHHH-----S-EEEE--EE-----------
T ss_pred HHHHhCCCCe----EEEEeCccCHHHHHHHHHHhCCCEEE-EEccccCHHHHHHHhhcCCCEEEE--eeeeccccch---
Confidence 5433322111 12344555555566677777776554 666665 578999988 8777766542
Q ss_pred hhHHhHHHHHHHHhccccEEEecCCChhhh--hcCCCCCCEEEeCCCCCCc
Q 001292 338 RGFQNLLSYWKSVFSRVNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADV 386 (1106)
Q Consensus 338 ~gleklis~~~~~l~~AD~VIa~S~~~~~~--~~gi~~~KI~VIpN~GVDl 386 (1106)
+..++...++..++..|.|.+++..+.+. ..|.+++++.+++|.++|.
T Consensus 135 -~~~~~~~~~r~~l~~f~~i~aqs~~da~r~~~lG~~~~~v~v~GnlKfd~ 184 (186)
T PF04413_consen 135 -RYRRFPFLFRPLLSRFDRILAQSEADAERFRKLGAPPERVHVTGNLKFDQ 184 (186)
T ss_dssp -------HHHHHHGGG-SEEEESSHHHHHHHHTTT-S--SEEE---GGG--
T ss_pred -hhhhhHHHHHHHHHhCCEEEECCHHHHHHHHHcCCCcceEEEeCcchhcc
Confidence 11333344567889999999999888777 6688888999999987774
No 106
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=98.69 E-value=1.6e-07 Score=111.28 Aligned_cols=173 Identities=10% Similarity=0.140 Sum_probs=124.6
Q ss_pred ccccEEEecCCChhh-hhcCCC-CCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCC
Q 001292 352 SRVNVIVFPDYTLPM-LYSVLD-AGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWD 429 (1106)
Q Consensus 352 ~~AD~VIa~S~~~~~-~~~gi~-~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg 429 (1106)
.+.|.||+++..... +...++ ..++.++|- |+=. .+.. . .....-+++++.
T Consensus 238 ~~~~~iIv~T~~q~~di~~r~~~~~~~~~ip~-g~i~----~~~~---------~---~r~~~~~l~~t~---------- 290 (438)
T TIGR02919 238 TRNKKIIIPNKNEYEKIKELLDNEYQEQISQL-GYLY----PFKK---------D---NKYRKQALILTN---------- 290 (438)
T ss_pred cccCeEEeCCHHHHHHHHHHhCcccCceEEEE-EEEE----eecc---------c---cCCcccEEEECC----------
Confidence 677889988855333 333333 445666663 3321 0100 0 012224555541
Q ss_pred HHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChh-hHHHHHHHcCeEEEcc
Q 001292 430 YAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNG-DVNGVLLMADIVLYGS 508 (1106)
Q Consensus 430 ~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~e-DL~~LyaaADVfV~PS 508 (1106)
...++++..|.+++ |+++| -| |-+.+. .+.+.++ +++ ++ .|.+.|... ++.++|..||+++-.|
T Consensus 291 -s~~I~~i~~Lv~~l-------Pd~~f-~I-ga~te~-s~kL~~L-~~y--~n-vvly~~~~~~~l~~ly~~~dlyLdin 355 (438)
T TIGR02919 291 -SDQIEHLEEIVQAL-------PDYHF-HI-AALTEM-SSKLMSL-DKY--DN-VKLYPNITTQKIQELYQTCDIYLDIN 355 (438)
T ss_pred -HHHHHHHHHHHHhC-------CCcEE-EE-EecCcc-cHHHHHH-Hhc--CC-cEEECCcChHHHHHHHHhccEEEEcc
Confidence 55788888887655 99984 55 776662 3788888 655 54 777888665 9999999999999999
Q ss_pred CCCCCCCcHHHHHHHHhCCCEEecCCC-CchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCccc
Q 001292 509 SQVEQGFPSLIVRAMTFGIPVITPDFP-IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKL 571 (1106)
Q Consensus 509 ~~EeEGFGlvLLEAMA~G~PVIASD~g-GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpel 571 (1106)
..| +|+++++||++.|+|||+.+.. +..+++.+ |.+++.+++++|+++|..++++++.
T Consensus 356 ~~e--~~~~al~eA~~~G~pI~afd~t~~~~~~i~~---g~l~~~~~~~~m~~~i~~lL~d~~~ 414 (438)
T TIGR02919 356 HGN--EILNAVRRAFEYNLLILGFEETAHNRDFIAS---ENIFEHNEVDQLISKLKDLLNDPNQ 414 (438)
T ss_pred ccc--cHHHHHHHHHHcCCcEEEEecccCCcccccC---CceecCCCHHHHHHHHHHHhcCHHH
Confidence 976 9999999999999999999765 45577744 8899999999999999999999976
No 107
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.9e-06 Score=102.43 Aligned_cols=330 Identities=14% Similarity=0.154 Sum_probs=183.2
Q ss_pred CCCCCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCc--hHHHH--------HHh-----HHHHHhhccC
Q 001292 219 GVRPPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNS--HSLWE--------QIA-----GQISILGQEQ 283 (1106)
Q Consensus 219 g~r~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~--~~i~r--------~lg-----~lvkiIr~~~ 283 (1106)
..++.||.+++++|....+.-+...+.+.+.+.-.+|-.+..++... .+.+- .++ ....-|+...
T Consensus 256 ~~~rlRvGylS~dlr~Havg~l~~~v~e~hDRdkfEvfay~~g~~~~dal~~rI~a~~~~~~~~~~~dd~e~a~~I~~d~ 335 (620)
T COG3914 256 NGKRLRVGYLSSDLRSHAVGFLLRWVFEYHDRDKFEVFAYSLGPPHTDALQERISAAVEKWYPIGRMDDAEIANAIRTDG 335 (620)
T ss_pred cccceeEEEeccccccchHHHHHHHHHHHhchhheEEEEEecCCCCchhHHHHHHHhhhheeccCCcCHHHHHHHHHhcC
Confidence 35678999999999999999999999999999889998887763211 11110 111 0233333334
Q ss_pred ccE-EEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecCC
Q 001292 284 YSL-IDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDY 362 (1106)
Q Consensus 284 pDi-Ih~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~ 362 (1106)
.|+ |+........-..+.. .+-.||.++.-+..-. ......|++|...+
T Consensus 336 IdILvDl~g~T~d~r~~v~A-----------~RpAPiqvswlGy~aT-------------------~g~p~~DY~I~D~y 385 (620)
T COG3914 336 IDILVDLDGHTVDTRCQVFA-----------HRPAPIQVSWLGYPAT-------------------TGSPNMDYFISDPY 385 (620)
T ss_pred CeEEEeccCceeccchhhhh-----------cCCCceEEeecccccc-------------------cCCCcceEEeeCce
Confidence 442 3332221111111111 1334555553332110 01234555555433
Q ss_pred ChhhhhcCCCCCCEEEeCC--CCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHHHh
Q 001292 363 TLPMLYSVLDAGNFFVIPG--SPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPL 440 (1106)
Q Consensus 363 ~~~~~~~gi~~~KI~VIpN--~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~L 440 (1106)
..+........+++.-+|. .++| .+.+.... .-|.++|++++.+|++++++.+ |-...+++-..++
T Consensus 386 ~vPp~ae~yysEkl~RLp~cy~p~d-----~~~~v~p~-~sR~~lglp~~avVf~c~~n~~------K~~pev~~~wmqI 453 (620)
T COG3914 386 TVPPTAEEYYSEKLWRLPQCYQPVD-----GFEPVTPP-PSRAQLGLPEDAVVFCCFNNYF------KITPEVFALWMQI 453 (620)
T ss_pred ecCchHHHHHHHHHHhcccccCCCC-----CcccCCCC-cchhhcCCCCCeEEEEecCCcc------cCCHHHHHHHHHH
Confidence 3221100011122222221 1222 22221111 2367899999998888887543 3444556556566
Q ss_pred HHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCC--hhhHHHHHHHcCeEEEccCCCCCCCcHH
Q 001292 441 LIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGF--NGDVNGVLLMADIVLYGSSQVEQGFPSL 518 (1106)
Q Consensus 441 l~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~--~eDL~~LyaaADVfV~PS~~EeEGFGlv 518 (1106)
+++. |+-.|++..|.......+.+++++++.|+...+.+|.++ .++..+.|..||+|+=+--+ +...+
T Consensus 454 L~~v-------P~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iADlvLDTyPY---~g~TT 523 (620)
T COG3914 454 LSAV-------PNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLDTYPY---GGHTT 523 (620)
T ss_pred HHhC-------CCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchhheeeecccC---CCccc
Confidence 5443 776655554432222467889999999998889999994 46788999999999955444 67789
Q ss_pred HHHHHHhCCCEEec-------CCCCchhhhcc-CCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH--
Q 001292 519 IVRAMTFGIPVITP-------DFPIIKEYVAE-GAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKN-- 588 (1106)
Q Consensus 519 LLEAMA~G~PVIAS-------D~gGI~EiV~D-g~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake-- 588 (1106)
.+||+-+|+|||+- .+++ .++.. |..-.++ .+.+++.+.-..+-.|..++ ++....-++..+.
T Consensus 524 a~daLwm~vPVlT~~G~~FasR~~~--si~~~agi~e~vA--~s~~dYV~~av~~g~dral~---q~~r~~l~~~r~tsp 596 (620)
T COG3914 524 ASDALWMGVPVLTRVGEQFASRNGA--SIATNAGIPELVA--DSRADYVEKAVAFGSDRALR---QQVRAELKRSRQTSP 596 (620)
T ss_pred hHHHHHhcCceeeeccHHHHHhhhH--HHHHhcCCchhhc--CCHHHHHHHHHHhcccHHHH---HhhHHHHHhccccCc
Confidence 99999999999974 1221 11111 2222223 46777877777777777653 3322221111111
Q ss_pred hcHHHHHH-HHHHHHHHHhc
Q 001292 589 MLALDCVT-RYARILENVLN 607 (1106)
Q Consensus 589 ~fsee~v~-~Y~eLyeslLk 607 (1106)
.|..+... .++.+|..+..
T Consensus 597 L~d~~~far~le~~y~~M~~ 616 (620)
T COG3914 597 LFDPKAFARKLETLYWGMWS 616 (620)
T ss_pred ccCHHHHHHHHHHHHHHHHH
Confidence 34444443 77777776643
No 108
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.65 E-value=6.4e-06 Score=92.11 Aligned_cols=99 Identities=13% Similarity=0.110 Sum_probs=70.1
Q ss_pred cEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCC
Q 001292 411 EIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGF 490 (1106)
Q Consensus 411 ~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~ 490 (1106)
..+++++|.... .+-...+++++..+. +++++.+++|.+... .++++++++.. . +|.+.++
T Consensus 171 ~~iLi~~GG~d~----~~~~~~~l~~l~~~~----------~~~~i~vv~G~~~~~-~~~l~~~~~~~---~-~i~~~~~ 231 (279)
T TIGR03590 171 RRVLVSFGGADP----DNLTLKLLSALAESQ----------INISITLVTGSSNPN-LDELKKFAKEY---P-NIILFID 231 (279)
T ss_pred CeEEEEeCCcCC----cCHHHHHHHHHhccc----------cCceEEEEECCCCcC-HHHHHHHHHhC---C-CEEEEeC
Confidence 446777775443 223345566664321 344556788886432 47888877642 2 7999999
Q ss_pred hhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCC
Q 001292 491 NGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP 535 (1106)
Q Consensus 491 ~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~g 535 (1106)
.+++.++|+.||++|.++ |.++.|++++|+|+|+-...
T Consensus 232 ~~~m~~lm~~aDl~Is~~-------G~T~~E~~a~g~P~i~i~~~ 269 (279)
T TIGR03590 232 VENMAELMNEADLAIGAA-------GSTSWERCCLGLPSLAICLA 269 (279)
T ss_pred HHHHHHHHHHCCEEEECC-------chHHHHHHHcCCCEEEEEec
Confidence 999999999999999752 48999999999999987553
No 109
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=98.58 E-value=8e-06 Score=103.86 Aligned_cols=287 Identities=10% Similarity=0.044 Sum_probs=182.9
Q ss_pred cEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecCCCh
Q 001292 285 SLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTL 364 (1106)
Q Consensus 285 DiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~~~ 364 (1106)
|+|-+|.|...++..+..+.. ...++-+..|-- +...-.+...+.-+. ....+-.||.|-+++...
T Consensus 203 d~VWVhDYhL~llP~~LR~~~---------~~~~IgfFlHiP-FPs~eifr~LP~r~e----iL~glL~aDlIGFht~~y 268 (854)
T PLN02205 203 DFVWIHDYHLMVLPTFLRKRF---------NRVKLGFFLHSP-FPSSEIYKTLPIREE----LLRALLNSDLIGFHTFDY 268 (854)
T ss_pred CEEEEeCchhhHHHHHHHhhC---------CCCcEEEEecCC-CCChHHHhhCCcHHH----HHHHHhcCCeEEecCHHH
Confidence 688889999888887776542 456777777762 111001101100111 223355899999988665
Q ss_pred hhh-------hcCCCC------------CC---EEEeCCCCCCcccccccCcc-------hhHHHHHHHcCCCCCcEEEE
Q 001292 365 PML-------YSVLDA------------GN---FFVIPGSPADVWAVEAYSKS-------HEKYQLRKENGFLKDEIVVV 415 (1106)
Q Consensus 365 ~~~-------~~gi~~------------~K---I~VIpN~GVDl~~~e~F~ps-------~s~~~LR~~lGL~~d~~VIL 415 (1106)
... ..++.. .+ +.+.| .|||. ..|... ....+++++++- +++.+|+
T Consensus 269 ar~Fl~~~~r~lgl~~~~~~g~~~~~~~Gr~v~v~~~P-igId~---~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~il 343 (854)
T PLN02205 269 ARHFLSCCSRMLGLSYESKRGYIGLEYYGRTVSIKILP-VGIHM---GQLQSVLSLPETEAKVKELIKQFCD-QDRIMLL 343 (854)
T ss_pred HHHHHHHHHHHhCCcccCCCcceeEEECCcEEEEEEEe-CeEcH---HHHHHHhcChhHHHHHHHHHHHhcc-CCCEEEE
Confidence 443 112211 11 22334 68887 443221 123456666542 2567999
Q ss_pred EEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcC-----CCC--ccHHHHHHHHHH----cCCCC-C
Q 001292 416 VVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGN-----STD--GYNDALQEVASR----LGLLE-H 483 (1106)
Q Consensus 416 ~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~-----Gpe--rY~eeLkeLaek----lGL~d-~ 483 (1106)
.|.|+.. .||...-+.|+.+++++++... .++.| +.+.. +++ .+..++.+++.+ +|-.+ .
T Consensus 344 gVDrlD~----~KGi~~kl~A~e~~L~~~P~~~---gkvvl-vQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~ 415 (854)
T PLN02205 344 GVDDMDI----FKGISLKLLAMEQLLMQHPEWQ---GKVVL-VQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYD 415 (854)
T ss_pred EccCccc----ccCHHHHHHHHHHHHHhCcccc---CCEEE-EEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCc
Confidence 9999988 8899999999999998775443 23443 33332 111 123344455543 23211 1
Q ss_pred cEEEcC---ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCC-------------------CEEecCCCCchhhh
Q 001292 484 SVRHYG---FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGI-------------------PVITPDFPIIKEYV 541 (1106)
Q Consensus 484 rV~flG---~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~-------------------PVIASD~gGI~EiV 541 (1106)
-|+++. +.+++..+|..|||+++++..+ |.-++..|+.+|.. .+|.|.+.|....+
T Consensus 416 Pv~~~~~~~~~~e~~aly~~ADv~lVT~lRD--GMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEfaGaa~~L 493 (854)
T PLN02205 416 PIVLIDAPLKFYERVAYYVVAECCLVTAVRD--GMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEFIGCSPSL 493 (854)
T ss_pred eEEEEecCCCHHHHHHHHHhccEEEeccccc--cccccchheeEEccCccccccccccccccCCCCceEeeeccchhHHh
Confidence 255554 4588999999999999999997 99999999999864 37889999999888
Q ss_pred ccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 001292 542 AEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILENV 605 (1106)
Q Consensus 542 ~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLyesl 605 (1106)
. ..++++|.|++++|++|.+.++.+.. +++.--+..++.+..+.....++.+..-++..
T Consensus 494 ~---~Ai~VNP~d~~~~a~ai~~AL~m~~~--Er~~R~~~~~~~v~~~d~~~W~~~fl~~l~~~ 552 (854)
T PLN02205 494 S---GAIRVNPWNIDAVADAMDSALEMAEP--EKQLRHEKHYRYVSTHDVGYWARSFLQDLERT 552 (854)
T ss_pred C---cCeEECCCCHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 2 47899999999999999999998764 24444556667777666655555555444443
No 110
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.57 E-value=2.4e-05 Score=90.11 Aligned_cols=297 Identities=16% Similarity=0.121 Sum_probs=163.4
Q ss_pred CEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCC-----c--------------hHH-------HHHHhHHH
Q 001292 223 PRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGN-----S--------------HSL-------WEQIAGQI 276 (1106)
Q Consensus 223 ~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~-----~--------------~~i-------~r~lg~lv 276 (1106)
++|+++.|+.+.+ +..-.|+++|+.+==+|.++..+... . ..+ ++..+.++
T Consensus 2 ~ki~i~AGE~SGD---llGa~LikaLk~~~~~~efvGvgG~~m~aeG~~sl~~~~elsvmGf~EVL~~lp~llk~~~~~~ 78 (381)
T COG0763 2 LKIALSAGEASGD---LLGAGLIKALKARYPDVEFVGVGGEKMEAEGLESLFDMEELSVMGFVEVLGRLPRLLKIRRELV 78 (381)
T ss_pred ceEEEEecccchh---hHHHHHHHHHHhhCCCeEEEEeccHHHHhccCccccCHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 5888888876543 56677899999983367776654211 1 111 11222245
Q ss_pred HHhhccCccE---EEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhcc
Q 001292 277 SILGQEQYSL---IDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSR 353 (1106)
Q Consensus 277 kiIr~~~pDi---Ih~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~ 353 (1106)
+.+...++|+ ||.+.+.-.+...+.+.. .++|+|+-+--. -|... ++ +-....+.
T Consensus 79 ~~i~~~kpD~~i~IDsPdFnl~vak~lrk~~----------p~i~iihYV~Ps---VWAWr------~~---Ra~~i~~~ 136 (381)
T COG0763 79 RYILANKPDVLILIDSPDFNLRVAKKLRKAG----------PKIKIIHYVSPS---VWAWR------PK---RAVKIAKY 136 (381)
T ss_pred HHHHhcCCCEEEEeCCCCCchHHHHHHHHhC----------CCCCeEEEECcc---eeeec------hh---hHHHHHHH
Confidence 5556688985 455666666666665521 347777653221 11111 11 11223456
Q ss_pred ccEEEecCCChhhhhcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEE-EEcccCccccccCCHHH
Q 001292 354 VNVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVV-VVGSSFFYNELSWDYAV 432 (1106)
Q Consensus 354 AD~VIa~S~~~~~~~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL-~VGRl~~y~kg~Kg~dl 432 (1106)
+|.+.+.=+.....|....-. ...|++.=.|. .+-...+..+|++++++.+..++. ..|+... +...
T Consensus 137 ~D~lLailPFE~~~y~k~g~~-~~yVGHpl~d~-----i~~~~~r~~ar~~l~~~~~~~~lalLPGSR~s------EI~r 204 (381)
T COG0763 137 VDHLLAILPFEPAFYDKFGLP-CTYVGHPLADE-----IPLLPDREAAREKLGIDADEKTLALLPGSRRS------EIRR 204 (381)
T ss_pred hhHeeeecCCCHHHHHhcCCC-eEEeCChhhhh-----ccccccHHHHHHHhCCCCCCCeEEEecCCcHH------HHHH
Confidence 788777766666664433332 56676632332 212234566899999987765544 5565333 3444
Q ss_pred HHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCC
Q 001292 433 AMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVE 512 (1106)
Q Consensus 433 LLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~Ee 512 (1106)
++..|.+..++ ++...|+++| +++.-+..|.....+..+...... .+++. .++-.+.+.+||+.+..|
T Consensus 205 l~~~f~~a~~~---l~~~~~~~~~--vlp~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~a~~~aD~al~aS---- 272 (381)
T COG0763 205 LLPPFVQAAQE---LKARYPDLKF--VLPLVNAKYRRIIEEALKWEVAGL-SLILI--DGEKRKAFAAADAALAAS---- 272 (381)
T ss_pred HHHHHHHHHHH---HHhhCCCceE--EEecCcHHHHHHHHHHhhccccCc-eEEec--CchHHHHHHHhhHHHHhc----
Confidence 44444333322 2233488884 445544332233333333222211 23332 236778999999999776
Q ss_pred CCCcHHHHHHHHhCCCEEec-C----------------CCCchhhhccCCe--EEEEcCCCHHHHHHHHHHHHhCccc
Q 001292 513 QGFPSLIVRAMTFGIPVITP-D----------------FPIIKEYVAEGAQ--VIFFQKDNPEGLSRAFSLFISNGKL 571 (1106)
Q Consensus 513 EGFGlvLLEAMA~G~PVIAS-D----------------~gGI~EiV~Dg~n--G~LV~~~D~eeLAeAI~~LLsDpel 571 (1106)
|.+.||+|.+|+|.|++ . .-+.+.++-+... -++-..-.++.|++++..++.|+..
T Consensus 273 ---GT~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~ 347 (381)
T COG0763 273 ---GTATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDR 347 (381)
T ss_pred ---cHHHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHh
Confidence 78999999999999976 1 1223333322100 0000112588999999999999854
No 111
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=98.57 E-value=2.2e-07 Score=92.54 Aligned_cols=142 Identities=9% Similarity=0.064 Sum_probs=84.0
Q ss_pred EEEeCC-CCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCC---ch-----------------HHHHHHhHHHHHhhccCc
Q 001292 226 GLILGN-MAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGN---SH-----------------SLWEQIAGQISILGQEQY 284 (1106)
Q Consensus 226 alVlg~-L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~---~~-----------------~i~r~lg~lvkiIr~~~p 284 (1106)
+++... ...||.+..+.+++++|+++|++|+|++..... .. ..+.....+.+.++..++
T Consensus 2 li~~~~~~~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (177)
T PF13439_consen 2 LITNIFLPNIGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEELVKIFVKIPYPIRKRFLRSFFFMRRLRRLIKKEKP 81 (177)
T ss_dssp EEECC-TTSSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SSTEEEE---TT-SSTSS--HHHHHHHHHHHHHHHHT-
T ss_pred EEEEecCCCCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhhccceeeeeecccccccchhHHHHHHHHHHHHHcCC
Confidence 334333 345999999999999999999999999874322 00 111122236677888899
Q ss_pred cEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCccc-------ccchhhhhhhHHhHHHHHHHHhccccEE
Q 001292 285 SLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLA-------NRLPVYVERGFQNLLSYWKSVFSRVNVI 357 (1106)
Q Consensus 285 DiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls-------~r~~~Y~~~gleklis~~~~~l~~AD~V 357 (1106)
|+||.+.+...+...+..+ ++|+|++.|+.... .+...+.. .. .....++.+|.+
T Consensus 82 DiVh~~~~~~~~~~~~~~~------------~~~~v~~~H~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~i 143 (177)
T PF13439_consen 82 DIVHIHGPPAFWIALLACR------------KVPIVYTIHGPYFERRFLKSKLSPYSYLN---FR---IERKLYKKADRI 143 (177)
T ss_dssp SEEECCTTHCCCHHHHHHH------------CSCEEEEE-HHH--HHTTTTSCCCHHHHH---HC---TTHHHHCCSSEE
T ss_pred CeEEecccchhHHHHHhcc------------CCCEEEEeCCCcccccccccccchhhhhh---hh---hhhhHHhcCCEE
Confidence 9999988666555544442 57999999995421 11111001 00 112336899999
Q ss_pred EecCCChhhh--hcCCCCCCEEEeCCCCCCc
Q 001292 358 VFPDYTLPML--YSVLDAGNFFVIPGSPADV 386 (1106)
Q Consensus 358 Ia~S~~~~~~--~~gi~~~KI~VIpN~GVDl 386 (1106)
+++|....+. ..+++++++.|||| |||.
T Consensus 144 i~vS~~~~~~l~~~~~~~~ki~vI~n-gid~ 173 (177)
T PF13439_consen 144 IAVSESTKDELIKFGIPPEKIHVIYN-GIDT 173 (177)
T ss_dssp EESSHHHHHHHHHHT--SS-EEE-----B-C
T ss_pred EEECHHHHHHHHHhCCcccCCEEEEC-CccH
Confidence 9999776665 34788899999998 8998
No 112
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.54 E-value=7.7e-06 Score=95.18 Aligned_cols=285 Identities=14% Similarity=0.169 Sum_probs=161.0
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEEcCCCCc-------------------hHH-------HHHHhHHHHHhhccCccE---E
Q 001292 237 RSLLLITVVKNLQKLGYVFKIYAVRSGNS-------------------HSL-------WEQIAGQISILGQEQYSL---I 287 (1106)
Q Consensus 237 esl~vv~LakaLqe~GyeVtV~t~~dg~~-------------------~~i-------~r~lg~lvkiIr~~~pDi---I 287 (1106)
..+....|+++|+++.-++.++..+.... ..+ ++....+.+.+...+||+ |
T Consensus 10 GD~~ga~Li~~Lk~~~p~~~~~GvGG~~M~~~G~~~l~d~~~lsvmG~~Evl~~l~~~~~~~~~~~~~~~~~~pd~vIlI 89 (373)
T PF02684_consen 10 GDLHGARLIRALKARDPDIEFYGVGGPRMQAAGVESLFDMEELSVMGFVEVLKKLPKLKRLFRKLVERIKEEKPDVVILI 89 (373)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEechHHHhCCCceecchHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 45677889999999987787777643211 111 112223566677789995 4
Q ss_pred EEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecCCChhhh
Q 001292 288 DWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPML 367 (1106)
Q Consensus 288 h~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~~~~~~ 367 (1106)
|.+.+...+...+.++. ..+|+|+-+-=. -|... .+.+ +..-+.+|.+++.-......
T Consensus 90 D~pgFNlrlak~lk~~~----------~~~~viyYI~Pq---vWAWr------~~R~---~~i~~~~D~ll~ifPFE~~~ 147 (373)
T PF02684_consen 90 DYPGFNLRLAKKLKKRG----------IPIKVIYYISPQ---VWAWR------PGRA---KKIKKYVDHLLVIFPFEPEF 147 (373)
T ss_pred CCCCccHHHHHHHHHhC----------CCceEEEEECCc---eeeeC------ccHH---HHHHHHHhheeECCcccHHH
Confidence 55777777776666532 223366652211 11111 0001 11223456666655555555
Q ss_pred hcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEE-EEcccCccccccCCHHHHHHHHHHhHHHHHh
Q 001292 368 YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVV-VVGSSFFYNELSWDYAVAMHDVGPLLIKYAR 446 (1106)
Q Consensus 368 ~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL-~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~ak 446 (1106)
|.... -+..+++|.=+|. ..+.......++.+ ++++.++|+ .-|+.. .|..+....++++++.+.++
T Consensus 148 y~~~g-~~~~~VGHPl~d~-----~~~~~~~~~~~~~~-l~~~~~iIaLLPGSR~--~EI~rllP~~l~aa~~l~~~--- 215 (373)
T PF02684_consen 148 YKKHG-VPVTYVGHPLLDE-----VKPEPDRAEAREKL-LDPDKPIIALLPGSRK--SEIKRLLPIFLEAAKLLKKQ--- 215 (373)
T ss_pred HhccC-CCeEEECCcchhh-----hccCCCHHHHHHhc-CCCCCcEEEEeCCCCH--HHHHHHHHHHHHHHHHHHHh---
Confidence 44332 2567777743342 33332344556666 777776555 456532 24444556667777666543
Q ss_pred hccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhC
Q 001292 447 RNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFG 526 (1106)
Q Consensus 447 lk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G 526 (1106)
.|+++|+ ++.-+..+.+.+++.....+... .+.. ..++..++|+.||+.+..| |.+.||++.+|
T Consensus 216 ----~p~l~fv--vp~a~~~~~~~i~~~~~~~~~~~-~~~~--~~~~~~~~m~~ad~al~~S-------GTaTLE~Al~g 279 (373)
T PF02684_consen 216 ----RPDLQFV--VPVAPEVHEELIEEILAEYPPDV-SIVI--IEGESYDAMAAADAALAAS-------GTATLEAALLG 279 (373)
T ss_pred ----CCCeEEE--EecCCHHHHHHHHHHHHhhCCCC-eEEE--cCCchHHHHHhCcchhhcC-------CHHHHHHHHhC
Confidence 3888753 34333332344566665544432 2332 2356778999999999776 78999999999
Q ss_pred CCEEec-----------------CCCCchhhhccCC--eEEEEcCCCHHHHHHHHHHHHhCccc
Q 001292 527 IPVITP-----------------DFPIIKEYVAEGA--QVIFFQKDNPEGLSRAFSLFISNGKL 571 (1106)
Q Consensus 527 ~PVIAS-----------------D~gGI~EiV~Dg~--nG~LV~~~D~eeLAeAI~~LLsDpel 571 (1106)
+|.|+. +.-+++.++-+.. --++-+.-+++.+++++..+++|++.
T Consensus 280 ~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~ 343 (373)
T PF02684_consen 280 VPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENPEK 343 (373)
T ss_pred CCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHHH
Confidence 999965 1222333332211 01122234799999999999999875
No 113
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=98.52 E-value=0.00011 Score=85.01 Aligned_cols=98 Identities=19% Similarity=0.146 Sum_probs=73.0
Q ss_pred EEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCC
Q 001292 455 KFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDF 534 (1106)
Q Consensus 455 kfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~ 534 (1106)
++++.+|..... . ..+++ +|.+.++. ....+|..||++|.- |+..++.||+++|+|+|+...
T Consensus 271 ~~i~~~g~~~~~--~--------~~~~~-~v~~~~~~-p~~~ll~~~d~~I~h------gG~~t~~eal~~GvP~v~~P~ 332 (401)
T cd03784 271 RAILSLGWGGLG--A--------EDLPD-NVRVVDFV-PHDWLLPRCAAVVHH------GGAGTTAAALRAGVPQLVVPF 332 (401)
T ss_pred eEEEEccCcccc--c--------cCCCC-ceEEeCCC-CHHHHhhhhheeeec------CCchhHHHHHHcCCCEEeeCC
Confidence 556777776543 1 24455 89999986 477889999999943 556899999999999999854
Q ss_pred CC----chhhhccCCeEEEEcCC--CHHHHHHHHHHHHhCcc
Q 001292 535 PI----IKEYVAEGAQVIFFQKD--NPEGLSRAFSLFISNGK 570 (1106)
Q Consensus 535 gG----I~EiV~Dg~nG~LV~~~--D~eeLAeAI~~LLsDpe 570 (1106)
.+ ..+.+.....|..++.. ++++++++|.++++++.
T Consensus 333 ~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~~~ 374 (401)
T cd03784 333 FGDQPFWAARVAELGAGPALDPRELTAERLAAALRRLLDPPS 374 (401)
T ss_pred CCCcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhCHHH
Confidence 43 45566555677766554 68999999999998654
No 114
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=98.49 E-value=5.1e-05 Score=87.96 Aligned_cols=103 Identities=18% Similarity=0.206 Sum_probs=72.8
Q ss_pred eEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecC
Q 001292 454 FKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPD 533 (1106)
Q Consensus 454 ikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD 533 (1106)
+++++.+|.+... ..++ .+++ +|.+.++... ..+|..||++|..+ ...+++||+++|+|+|+..
T Consensus 255 ~~~i~~~g~~~~~--~~~~------~~~~-~v~~~~~~p~-~~ll~~~~~~I~hg------G~~t~~Eal~~G~P~v~~p 318 (392)
T TIGR01426 255 WHVVLSVGRGVDP--ADLG------ELPP-NVEVRQWVPQ-LEILKKADAFITHG------GMNSTMEALFNGVPMVAVP 318 (392)
T ss_pred CeEEEEECCCCCh--hHhc------cCCC-CeEEeCCCCH-HHHHhhCCEEEECC------CchHHHHHHHhCCCEEecC
Confidence 3556777776542 2222 2344 7998887754 47899999999653 3468999999999999964
Q ss_pred C----CCchhhhccCCeEEEEcCC--CHHHHHHHHHHHHhCcccH
Q 001292 534 F----PIIKEYVAEGAQVIFFQKD--NPEGLSRAFSLFISNGKLS 572 (1106)
Q Consensus 534 ~----gGI~EiV~Dg~nG~LV~~~--D~eeLAeAI~~LLsDpelR 572 (1106)
. ..+...+.+...|..++.. ++++++++|.++++|++.+
T Consensus 319 ~~~dq~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~~~~~ 363 (392)
T TIGR01426 319 QGADQPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSDPRYA 363 (392)
T ss_pred CcccHHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcCHHHH
Confidence 3 3344555555577766543 5789999999999998863
No 115
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=98.44 E-value=4.3e-05 Score=91.07 Aligned_cols=288 Identities=11% Similarity=0.070 Sum_probs=178.7
Q ss_pred cEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecCCCh
Q 001292 285 SLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTL 364 (1106)
Q Consensus 285 DiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~~~ 364 (1106)
|+|-.|.|...++..+..... ...++.+..|-- +...-.+...+..+.+ ...+-.||.|-+++...
T Consensus 149 DiIWVhDYhL~L~P~mlR~~~---------~~~~IgfFlHiP-fPssEvfr~lP~r~eI----l~gll~~dligFqt~~y 214 (486)
T COG0380 149 DIIWVHDYHLLLVPQMLRERI---------PDAKIGFFLHIP-FPSSEVFRCLPWREEI----LEGLLGADLIGFQTESY 214 (486)
T ss_pred CEEEEEechhhhhHHHHHHhC---------CCceEEEEEeCC-CCCHHHHhhCchHHHH----HHHhhcCCeeEecCHHH
Confidence 678889999888887776543 334666766663 1111111111111222 22355899999987654
Q ss_pred hhh-------hcC-----------CCCC--CEEEeCCCCCCcccccccCcc----hhHHHHHHHcCCCCCcEEEEEEccc
Q 001292 365 PML-------YSV-----------LDAG--NFFVIPGSPADVWAVEAYSKS----HEKYQLRKENGFLKDEIVVVVVGSS 420 (1106)
Q Consensus 365 ~~~-------~~g-----------i~~~--KI~VIpN~GVDl~~~e~F~ps----~s~~~LR~~lGL~~d~~VIL~VGRl 420 (1106)
... ..+ .... ++..+| +|+|...+...... ....++++.++ .+..+|+.+-|+
T Consensus 215 ~~nF~~~~~r~~~~~~~~~~~~~~~~~~~v~v~a~P-IgID~~~~~~~~~~~~v~~~~~el~~~~~--~~~kiivgvDRl 291 (486)
T COG0380 215 ARNFLDLCSRLLGVTGDADIRFNGADGRIVKVGAFP-IGIDPEEFERALKSPSVQEKVLELKAELG--RNKKLIVGVDRL 291 (486)
T ss_pred HHHHHHHHHHhccccccccccccccCCceEEEEEEe-eecCHHHHHHhhcCCchhhHHHHHHHHhc--CCceEEEEehhc
Confidence 433 111 1112 233345 68887322222111 12344555543 247789999998
Q ss_pred CccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCc------cHHHHHHHHHH----cCCCC-CcEEEcC
Q 001292 421 FFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDG------YNDALQEVASR----LGLLE-HSVRHYG 489 (1106)
Q Consensus 421 ~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~Gper------Y~eeLkeLaek----lGL~d-~rV~flG 489 (1106)
.. .||...-+.|+.+|+.++++-.. ++.++-|+...... +..++++++.+ +|-.+ +-|+|+-
T Consensus 292 Dy----~kGi~~rl~Afe~lL~~~Pe~~~---kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~ 364 (486)
T COG0380 292 DY----SKGIPQRLLAFERLLEEYPEWRG---KVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLH 364 (486)
T ss_pred cc----ccCcHHHHHHHHHHHHhChhhhC---ceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEe
Confidence 88 88999999999999988766543 44433333322111 12333444433 22211 1255554
Q ss_pred ---ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCC----CEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHH
Q 001292 490 ---FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGI----PVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAF 562 (1106)
Q Consensus 490 ---~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~----PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI 562 (1106)
..+++..+|..||++++++..+ |..++..|..||.- |.|.|.+.|....+.+ .++++|.|.+++|++|
T Consensus 365 ~~~~~~~l~al~~~aDv~lVtplrD--GMNLvakEyVa~q~~~~G~LiLSeFaGaa~~L~~---AliVNP~d~~~va~ai 439 (486)
T COG0380 365 RDLDRNELLALYRAADVMLVTPLRD--GMNLVAKEYVAAQRDKPGVLILSEFAGAASELRD---ALIVNPWDTKEVADAI 439 (486)
T ss_pred ccCCHHHHHHHHhhhceeeeccccc--cccHHHHHHHHhhcCCCCcEEEeccccchhhhcc---CEeECCCChHHHHHHH
Confidence 4478999999999999999997 99999999999854 8889999999988844 7899999999999999
Q ss_pred HHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Q 001292 563 SLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILE 603 (1106)
Q Consensus 563 ~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLye 603 (1106)
.+.|+-+.. ++++--+..++.+..+.....+..+..-+.
T Consensus 440 ~~AL~m~~e--Er~~r~~~~~~~v~~~d~~~W~~~fl~~la 478 (486)
T COG0380 440 KRALTMSLE--ERKERHEKLLKQVLTHDVARWANSFLDDLA 478 (486)
T ss_pred HHHhcCCHH--HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999997764 244444455555555555555555444443
No 116
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.39 E-value=0.00014 Score=84.07 Aligned_cols=310 Identities=16% Similarity=0.116 Sum_probs=185.9
Q ss_pred CCEEEEEeCCCCCChhHHHHHHHHHHHHHCC-CEEEEEEcCCCC----chHHHH--------------------------
Q 001292 222 PPRIGLILGNMAKDSRSLLLITVVKNLQKLG-YVFKIYAVRSGN----SHSLWE-------------------------- 270 (1106)
Q Consensus 222 ~~RIalVlg~L~~gGesl~vv~LakaLqe~G-yeVtV~t~~dg~----~~~i~r-------------------------- 270 (1106)
.+||+.|+|. -++-+-+.++++++++.+ .+..|+.++... ....++
T Consensus 3 ~~Kv~~I~GT---RPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~ 79 (383)
T COG0381 3 MLKVLTIFGT---RPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGN 79 (383)
T ss_pred ceEEEEEEec---CHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHH
Confidence 4688888765 467788899999999996 777666553211 111111
Q ss_pred HHhHHHHHhhccCccEEEEcc-ccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHH
Q 001292 271 QIAGQISILGQEQYSLIDWSI-FDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKS 349 (1106)
Q Consensus 271 ~lg~lvkiIr~~~pDiIh~~~-~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~ 349 (1106)
.+-.+.+++...+||.+-.|. -...++.+++... .+|||... ++++...-.++|.-...++.+
T Consensus 80 ~i~~~~~vl~~~kPD~VlVhGDT~t~lA~alaa~~----------~~IpV~Hv--EAGlRt~~~~~PEE~NR~l~~---- 143 (383)
T COG0381 80 IIEGLSKVLEEEKPDLVLVHGDTNTTLAGALAAFY----------LKIPVGHV--EAGLRTGDLYFPEEINRRLTS---- 143 (383)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHHH----------hCCceEEE--ecccccCCCCCcHHHHHHHHH----
Confidence 111256777788999877764 3344454555532 57887766 443322111223211122222
Q ss_pred HhccccEEEecCCChhhh--hcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHH-cCCCCCcEEEEEEcccCccccc
Q 001292 350 VFSRVNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKE-NGFLKDEIVVVVVGSSFFYNEL 426 (1106)
Q Consensus 350 ~l~~AD~VIa~S~~~~~~--~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~-lGL~~d~~VIL~VGRl~~y~kg 426 (1106)
.-+++.++++...... ..|.+++++++++|.-+|........ .......... ++...++.+++.+=|... .+
T Consensus 144 --~~S~~hfapte~ar~nLl~EG~~~~~IfvtGnt~iDal~~~~~~-~~~~~~~~~~~~~~~~~~~iLvT~HRreN--~~ 218 (383)
T COG0381 144 --HLSDLHFAPTEIARKNLLREGVPEKRIFVTGNTVIDALLNTRDR-VLEDSKILAKGLDDKDKKYILVTAHRREN--VG 218 (383)
T ss_pred --HhhhhhcCChHHHHHHHHHcCCCccceEEeCChHHHHHHHHHhh-hccchhhHHhhhccccCcEEEEEcchhhc--cc
Confidence 2455667777544433 67889999999999766652111000 0111111111 444444555554443332 11
Q ss_pred cCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHH-HHcCCCCCcEEEcCCh--hhHHHHHHHcCe
Q 001292 427 SWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVA-SRLGLLEHSVRHYGFN--GDVNGVLLMADI 503 (1106)
Q Consensus 427 ~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLa-eklGL~d~rV~flG~~--eDL~~LyaaADV 503 (1106)
+++..+++++.++.+++ +++. ++.+.++. ..+++.. ..++-.+ +|+++.+. .+...++..|-+
T Consensus 219 -~~~~~i~~al~~i~~~~-------~~~~--viyp~H~~---~~v~e~~~~~L~~~~-~v~li~pl~~~~f~~L~~~a~~ 284 (383)
T COG0381 219 -EPLEEICEALREIAEEY-------PDVI--VIYPVHPR---PRVRELVLKRLKNVE-RVKLIDPLGYLDFHNLMKNAFL 284 (383)
T ss_pred -ccHHHHHHHHHHHHHhC-------CCce--EEEeCCCC---hhhhHHHHHHhCCCC-cEEEeCCcchHHHHHHHHhceE
Confidence 56778888887777544 5664 67888875 5566666 4555554 79999876 467778888866
Q ss_pred EEEccCCCCCCCcHHHHHHHHhCCCEEecC-CCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHH
Q 001292 504 VLYGSSQVEQGFPSLIVRAMTFGIPVITPD-FPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASA 581 (1106)
Q Consensus 504 fV~PS~~EeEGFGlvLLEAMA~G~PVIASD-~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~ 581 (1106)
++-=| |...=||-.+|+||++-. ...=+|.++.| +-.++. .+.+.+.+++..++++++. .++|+..
T Consensus 285 iltDS-------GgiqEEAp~lg~Pvl~lR~~TERPE~v~ag-t~~lvg-~~~~~i~~~~~~ll~~~~~---~~~m~~~ 351 (383)
T COG0381 285 ILTDS-------GGIQEEAPSLGKPVLVLRDTTERPEGVEAG-TNILVG-TDEENILDAATELLEDEEF---YERMSNA 351 (383)
T ss_pred EEecC-------CchhhhHHhcCCcEEeeccCCCCccceecC-ceEEeC-ccHHHHHHHHHHHhhChHH---HHHHhcc
Confidence 55322 455679999999999974 45567767444 444554 5789999999999999886 4555443
No 117
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.37 E-value=7.1e-06 Score=97.46 Aligned_cols=182 Identities=13% Similarity=0.109 Sum_probs=111.5
Q ss_pred HHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCC
Q 001292 401 LRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGL 480 (1106)
Q Consensus 401 LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL 480 (1106)
.|.++|++++.++++.+.++. |=....++.+.+++++. |+.+ |++....... .+.+++.+++.|+
T Consensus 275 ~R~~~gLp~d~vvF~~fn~~~------KI~p~~l~~W~~IL~~v-------P~S~-L~L~~~~~~~-~~~l~~~~~~~Gv 339 (468)
T PF13844_consen 275 TRAQYGLPEDAVVFGSFNNLF------KISPETLDLWARILKAV-------PNSR-LWLLRFPASG-EARLRRRFAAHGV 339 (468)
T ss_dssp ETGGGT--SSSEEEEE-S-GG------G--HHHHHHHHHHHHHS-------TTEE-EEEEETSTTH-HHHHHHHHHHTTS
T ss_pred CHHHcCCCCCceEEEecCccc------cCCHHHHHHHHHHHHhC-------CCcE-EEEeeCCHHH-HHHHHHHHHHcCC
Confidence 388999999998888887644 35567888888888654 8887 4444433322 4788899999999
Q ss_pred CCCcEEEcCC--hhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCch-----hhhcc-CCeEEEEcC
Q 001292 481 LEHSVRHYGF--NGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIK-----EYVAE-GAQVIFFQK 552 (1106)
Q Consensus 481 ~d~rV~flG~--~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~-----EiV~D-g~nG~LV~~ 552 (1106)
...+|.|.+. .++....|..+||++=+..+ +.+.+.+||+.+|+|||+-.-.... .++.. |-..++.
T Consensus 340 ~~~Ri~f~~~~~~~ehl~~~~~~DI~LDT~p~---nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA-- 414 (468)
T PF13844_consen 340 DPDRIIFSPVAPREEHLRRYQLADICLDTFPY---NGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIA-- 414 (468)
T ss_dssp -GGGEEEEE---HHHHHHHGGG-SEEE--SSS-----SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB---
T ss_pred ChhhEEEcCCCCHHHHHHHhhhCCEEeeCCCC---CCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcC--
Confidence 8779999984 45666788999999976544 6789999999999999986322221 11111 2122222
Q ss_pred CCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH--HhcHH-HHHHHHHHHHHHH
Q 001292 553 DNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAK--NMLAL-DCVTRYARILENV 605 (1106)
Q Consensus 553 ~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ak--e~fse-e~v~~Y~eLyesl 605 (1106)
.|.+++.+.-.+|.+|++. ++++...-++... ..|.. ..+..+++.|+.+
T Consensus 415 ~s~~eYv~~Av~La~D~~~---l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~m 467 (468)
T PF13844_consen 415 DSEEEYVEIAVRLATDPER---LRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQM 467 (468)
T ss_dssp SSHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCHHH---HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHh
Confidence 5899999999999999998 4555555554432 23433 3334777777654
No 118
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.33 E-value=0.00022 Score=86.99 Aligned_cols=301 Identities=10% Similarity=0.072 Sum_probs=165.6
Q ss_pred cCCCCCCCCCCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCc-------------------hHHHH---
Q 001292 213 RSTPRFGVRPPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNS-------------------HSLWE--- 270 (1106)
Q Consensus 213 ~Sv~r~g~r~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~-------------------~~i~r--- 270 (1106)
.+-.+.....++|.++.|+... .+....|+++|+++.-++.+...+.... .++.+
T Consensus 217 ~~~~~~~~~~~kIfI~AGE~SG---DlhgA~Li~aLk~~~P~i~~~GvGG~~M~aaG~e~l~d~~eLsVmG~~EVL~~l~ 293 (608)
T PRK01021 217 KEARRKPFSNTSCFISAGEHSG---DTLGGNLLKEIKALYPDIHCFGVGGPQMRAEGFHPLFNMEEFQVSGFWEVLLALF 293 (608)
T ss_pred hhcccccccCCeEEEEeccccH---HHHHHHHHHHHHhcCCCcEEEEEccHHHHhCcCcccCChHHhhhhhHHHHHHHHH
Confidence 3344456777899999988643 4667788999999877777776643211 11111
Q ss_pred ----HHhHHHHHhhccCccEE---EEccccHHHHHHHHHHHhhhhcccCCCCC--CcEEEEEcCCcccccchhhhhhhHH
Q 001292 271 ----QIAGQISILGQEQYSLI---DWSIFDGIIADSLEAKEAISSLMQEPFHS--IPLVWIIQEDSLANRLPVYVERGFQ 341 (1106)
Q Consensus 271 ----~lg~lvkiIr~~~pDiI---h~~~~~~i~v~~La~k~~idII~te~~~g--IPVI~tIHna~Ls~r~~~Y~~~gle 341 (1106)
....+.+.+...+||++ |.+.+.-.+...+.+ .+ +|+|+-+-=. -|... +
T Consensus 294 ~l~~~~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk------------~Gi~ipviyYVsPq---VWAWR------~ 352 (608)
T PRK01021 294 KLWYRYRKLYKTILKTNPRTVICIDFPDFHFLLIKKLRK------------RGYKGKIVHYVCPS---IWAWR------P 352 (608)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHh------------cCCCCCEEEEECcc---ceeeC------c
Confidence 22224566667899954 556666655554444 34 4877663221 11111 1
Q ss_pred hHHHHHHHHhccccEEEecCCChhhhhcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEE-EEEccc
Q 001292 342 NLLSYWKSVFSRVNVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVV-VVVGSS 420 (1106)
Q Consensus 342 klis~~~~~l~~AD~VIa~S~~~~~~~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VI-L~VGRl 420 (1106)
+.+ +..-+.+|.+++.-+.....|... .-++..+++.=+|. ........+.++++|++++.++| +.-|+.
T Consensus 353 ~Ri---kki~k~vD~ll~IfPFE~~~y~~~-gv~v~yVGHPL~d~-----i~~~~~~~~~r~~lgl~~~~~iIaLLPGSR 423 (608)
T PRK01021 353 KRK---TILEKYLDLLLLILPFEQNLFKDS-PLRTVYLGHPLVET-----ISSFSPNLSWKEQLHLPSDKPIVAAFPGSR 423 (608)
T ss_pred chH---HHHHHHhhhheecCccCHHHHHhc-CCCeEEECCcHHhh-----cccCCCHHHHHHHcCCCCCCCEEEEECCCC
Confidence 111 112234455555544444444322 22467777633342 22223355678899997665544 556754
Q ss_pred CccccccCCHHHHHHHHH--HhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHH
Q 001292 421 FFYNELSWDYAVAMHDVG--PLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVL 498 (1106)
Q Consensus 421 ~~y~kg~Kg~dlLLeA~k--~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Ly 498 (1106)
.. |..+....+++|++ .+. ++.+|+ ++..+..+.+.+++..+..++. .+.+.... +-.+++
T Consensus 424 ~~--EI~rllPv~l~aa~~~~l~----------~~l~fv--vp~a~~~~~~~i~~~~~~~~~~--~~~ii~~~-~~~~~m 486 (608)
T PRK01021 424 RG--DILRNLTIQVQAFLASSLA----------STHQLL--VSSANPKYDHLILEVLQQEGCL--HSHIVPSQ-FRYELM 486 (608)
T ss_pred HH--HHHHHHHHHHHHHHHHHhc----------cCeEEE--EecCchhhHHHHHHHHhhcCCC--CeEEecCc-chHHHH
Confidence 32 33334466666664 221 245643 3333332236667766543321 23333221 236999
Q ss_pred HHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec-CCC------------------CchhhhccCC-eEEEE---cCCCH
Q 001292 499 LMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP-DFP------------------IIKEYVAEGA-QVIFF---QKDNP 555 (1106)
Q Consensus 499 aaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS-D~g------------------GI~EiV~Dg~-nG~LV---~~~D~ 555 (1106)
++||+.+..| |.+.||++.+|+|.|+. ... +.+.++.+.. .--++ +.-++
T Consensus 487 ~aaD~aLaaS-------GTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tp 559 (608)
T PRK01021 487 RECDCALAKC-------GTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQP 559 (608)
T ss_pred HhcCeeeecC-------CHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCH
Confidence 9999999887 79999999999999975 222 1222222111 01122 23468
Q ss_pred HHHHHHHHHHHhCccc
Q 001292 556 EGLSRAFSLFISNGKL 571 (1106)
Q Consensus 556 eeLAeAI~~LLsDpel 571 (1106)
+.+++++ +++.|++.
T Consensus 560 e~La~~l-~lL~d~~~ 574 (608)
T PRK01021 560 EEVAAAL-DILKTSQS 574 (608)
T ss_pred HHHHHHH-HHhcCHHH
Confidence 8999886 78888775
No 119
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.32 E-value=0.0002 Score=80.22 Aligned_cols=269 Identities=14% Similarity=0.161 Sum_probs=143.8
Q ss_pred CEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCc--------------------------hHHH-------
Q 001292 223 PRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNS--------------------------HSLW------- 269 (1106)
Q Consensus 223 ~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~--------------------------~~i~------- 269 (1106)
+||++.+.+.+.|..+. .+.++++| +|++|++++.+.... ....
T Consensus 1 MkIl~~v~~~G~GH~~R-~~~la~~L--rg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASR-CLALARAL--RGHEVTFITSGPAPEFLKPRFPVREIPGLGPIQENGRLDRWKTVRNNIRWLA 77 (318)
T ss_pred CEEEEEeCCCCcCHHHH-HHHHHHHH--ccCceEEEEcCCcHHHhccccCEEEccCceEeccCCccchHHHHHHHHHhhH
Confidence 68999888866655554 55699999 489999998754310 0000
Q ss_pred ---HHHhHHHHHhhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccc-cchhhhhhhHHhHHH
Q 001292 270 ---EQIAGQISILGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLAN-RLPVYVERGFQNLLS 345 (1106)
Q Consensus 270 ---r~lg~lvkiIr~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~-r~~~Y~~~gleklis 345 (1106)
+.+....+.++..+||+|-.-.+... ....+ ..++|+|...|...... ............++.
T Consensus 78 ~~~~~~~~~~~~l~~~~pDlVIsD~~~~~---~~aa~----------~~giP~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 144 (318)
T PF13528_consen 78 RLARRIRREIRWLREFRPDLVISDFYPLA---ALAAR----------RAGIPVIVISNQYWFLHPNFWLPWDQDFGRLIE 144 (318)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEcChHHH---HHHHH----------hcCCCEEEEEehHHcccccCCcchhhhHHHHHH
Confidence 01112455667778887766543321 12222 26899987766642221 111100111122222
Q ss_pred HHHH-H-hccccEEEecCCChhhhhcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCcc
Q 001292 346 YWKS-V-FSRVNVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFY 423 (1106)
Q Consensus 346 ~~~~-~-l~~AD~VIa~S~~~~~~~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y 423 (1106)
.+.. . +..++..+..+..... ....++.+++.. + +...+... -.+...+++++|...
T Consensus 145 ~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~p~-~-------------~~~~~~~~-~~~~~~iLv~~gg~~-- 203 (318)
T PF13528_consen 145 RYIDRYHFPPADRRLALSFYPPL----PPFFRVPFVGPI-I-------------RPEIRELP-PEDEPKILVYFGGGG-- 203 (318)
T ss_pred HhhhhccCCcccceecCCccccc----cccccccccCch-h-------------cccccccC-CCCCCEEEEEeCCCc--
Confidence 2211 1 2333333333322100 011112222211 1 11111111 123566888888433
Q ss_pred ccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCCh-hhHHHHHHHcC
Q 001292 424 NELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFN-GDVNGVLLMAD 502 (1106)
Q Consensus 424 ~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~-eDL~~LyaaAD 502 (1106)
...++++++.+ ++..+ +++|..... . . .. +|.+.++. .++.++++.||
T Consensus 204 ------~~~~~~~l~~~-----------~~~~~-~v~g~~~~~--~---------~-~~-ni~~~~~~~~~~~~~m~~ad 252 (318)
T PF13528_consen 204 ------PGDLIEALKAL-----------PDYQF-IVFGPNAAD--P---------R-PG-NIHVRPFSTPDFAELMAAAD 252 (318)
T ss_pred ------HHHHHHHHHhC-----------CCCeE-EEEcCCccc--c---------c-CC-CEEEeecChHHHHHHHHhCC
Confidence 23455555332 45564 445765421 0 0 33 89999976 89999999999
Q ss_pred eEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCch------hhhccCCeEEEEcC--CCHHHHHHHHHHH
Q 001292 503 IVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIK------EYVAEGAQVIFFQK--DNPEGLSRAFSLF 565 (1106)
Q Consensus 503 VfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~------EiV~Dg~nG~LV~~--~D~eeLAeAI~~L 565 (1106)
++|..+ +-.++.||+++|+|+|+-...+.. +.+.....|..++. -+++.|+++|.++
T Consensus 253 ~vIs~~------G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 253 LVISKG------GYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred EEEECC------CHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHHHHHHhcC
Confidence 999553 235699999999999998765533 44544445555443 3678888888764
No 120
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=98.26 E-value=3.3e-06 Score=82.69 Aligned_cols=132 Identities=11% Similarity=0.140 Sum_probs=75.0
Q ss_pred ChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchH----------------------HHHHHhHHHHHh--hccCccEEEEc
Q 001292 235 DSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHS----------------------LWEQIAGQISIL--GQEQYSLIDWS 290 (1106)
Q Consensus 235 gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~----------------------i~r~lg~lvkiI--r~~~pDiIh~~ 290 (1106)
||.+.++..++++|.++|++|+|++..+..... .++....+..++ +..++|+||++
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Dvv~~~ 80 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPEDDEEEEDGVRVHRLPLPRRPWPLRLLRFLRRLRRLLAARRERPDVVHAH 80 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GGG-SEEETTEEEEEE--S-SSSGGGHCCHHHHHHHHCHHCT---SEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCcccccccCCceEEeccCCccchhhhhHHHHHHHHHHHhhhccCCeEEEec
Confidence 688999999999999999999999975432110 111222355666 77899999999
Q ss_pred cccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHH-HHHHHHhccccEEEecCCChhhh--
Q 001292 291 IFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLL-SYWKSVFSRVNVIVFPDYTLPML-- 367 (1106)
Q Consensus 291 ~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~glekli-s~~~~~l~~AD~VIa~S~~~~~~-- 367 (1106)
.+...++..+..+. .++|+|+++|+......... . ..+. ......++.+|.+++.|......
T Consensus 81 ~~~~~~~~~~~~~~----------~~~p~v~~~h~~~~~~~~~~--~---~~~~~~~~~~~~~~ad~vi~~S~~~~~~l~ 145 (160)
T PF13579_consen 81 SPTAGLVAALARRR----------RGIPLVVTVHGTLFRRGSRW--K---RRLYRWLERRLLRRADRVIVVSEAMRRYLR 145 (160)
T ss_dssp HHHHHHHHHHHHHH----------HT--EEEE-SS-T------H--H---HHHHHHHHHHHHHH-SEEEESSHHHHHHHH
T ss_pred ccchhHHHHHHHHc----------cCCcEEEEECCCchhhccch--h---hHHHHHHHHHHHhcCCEEEECCHHHHHHHH
Confidence 87666666555522 47899999998532221100 0 1111 11245688999999999776655
Q ss_pred hcCCCCCCEEEeCC
Q 001292 368 YSVLDAGNFFVIPG 381 (1106)
Q Consensus 368 ~~gi~~~KI~VIpN 381 (1106)
..+.+++++.||||
T Consensus 146 ~~g~~~~ri~vipn 159 (160)
T PF13579_consen 146 RYGVPPDRIHVIPN 159 (160)
T ss_dssp HH---GGGEEE---
T ss_pred HhCCCCCcEEEeCc
Confidence 45788899999998
No 121
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.22 E-value=0.00038 Score=80.26 Aligned_cols=267 Identities=15% Similarity=0.122 Sum_probs=150.6
Q ss_pred hhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHHHHHh-------------------------HHHHHhhccCccEEEEc
Q 001292 236 SRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLWEQIA-------------------------GQISILGQEQYSLIDWS 290 (1106)
Q Consensus 236 Gesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r~lg-------------------------~lvkiIr~~~pDiIh~~ 290 (1106)
+...+.-++++.|+++||+|.|++-..+....+.+..| .+.+.++..+||++-..
T Consensus 11 ~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~~l~~~~~~~~pDv~is~ 90 (335)
T PF04007_consen 11 AHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLYGIDYIVIGKHGDSLYGKLLESIERQYKLLKLIKKFKPDVAISF 90 (335)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCEEEec
Confidence 46667889999999999999999875543333322111 15566666788876654
Q ss_pred cccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecCCChhhh--h
Q 001292 291 IFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPML--Y 368 (1106)
Q Consensus 291 ~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~~~~~~--~ 368 (1106)
.... +...+. ..++|.|....+.. . .. . -+..+..+|.++++....... .
T Consensus 91 ~s~~--a~~va~-----------~lgiP~I~f~D~e~-a---~~---------~--~~Lt~Pla~~i~~P~~~~~~~~~~ 142 (335)
T PF04007_consen 91 GSPE--AARVAF-----------GLGIPSIVFNDTEH-A---IA---------Q--NRLTLPLADVIITPEAIPKEFLKR 142 (335)
T ss_pred CcHH--HHHHHH-----------HhCCCeEEEecCch-h---hc---------c--ceeehhcCCeeECCcccCHHHHHh
Confidence 3222 222222 15789888755420 0 00 0 012345788999887544332 2
Q ss_pred cCCCCCCEEEeCCCCCCcccc-cccCcchhHHHHHHHcCCCCCcEEEEEEcc-cCccccccCCHHHHHHHHHHhHHHHHh
Q 001292 369 SVLDAGNFFVIPGSPADVWAV-EAYSKSHEKYQLRKENGFLKDEIVVVVVGS-SFFYNELSWDYAVAMHDVGPLLIKYAR 446 (1106)
Q Consensus 369 ~gi~~~KI~VIpN~GVDl~~~-e~F~ps~s~~~LR~~lGL~~d~~VIL~VGR-l~~y~kg~Kg~dlLLeA~k~Ll~k~ak 446 (1106)
.|.. +++...+ |++-+.. ..|.| .....+++|+.++..+++=... -..|+.+.+ ..+-+.++.|.+ .
T Consensus 143 ~G~~-~~i~~y~--G~~E~ayl~~F~P---d~~vl~~lg~~~~~yIvvR~~~~~A~y~~~~~--~i~~~ii~~L~~-~-- 211 (335)
T PF04007_consen 143 FGAK-NQIRTYN--GYKELAYLHPFKP---DPEVLKELGLDDEPYIVVRPEAWKASYDNGKK--SILPEIIEELEK-Y-- 211 (335)
T ss_pred cCCc-CCEEEEC--CeeeEEeecCCCC---ChhHHHHcCCCCCCEEEEEeccccCeeecCcc--chHHHHHHHHHh-h--
Confidence 2333 3444334 3543211 23444 3456778998766555442211 112444422 223333333321 1
Q ss_pred hccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhC
Q 001292 447 RNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFG 526 (1106)
Q Consensus 447 lk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G 526 (1106)
.+. ++++++..+. . ++.++. +|.+....-+...++.-||++|- +.|.-..||+.+|
T Consensus 212 -----~~~--vV~ipr~~~~--~---~~~~~~-----~~~i~~~~vd~~~Ll~~a~l~Ig-------~ggTMa~EAA~LG 267 (335)
T PF04007_consen 212 -----GRN--VVIIPRYEDQ--R---ELFEKY-----GVIIPPEPVDGLDLLYYADLVIG-------GGGTMAREAALLG 267 (335)
T ss_pred -----Cce--EEEecCCcch--h---hHHhcc-----CccccCCCCCHHHHHHhcCEEEe-------CCcHHHHHHHHhC
Confidence 221 4566665432 1 233322 24455544466789999999983 4468889999999
Q ss_pred CCEEecCCC---CchhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 527 IPVITPDFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 527 ~PVIASD~g---GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
+|+|..-.+ ++-+++. +.|+++...|++++.+.+.....
T Consensus 268 tPaIs~~~g~~~~vd~~L~--~~Gll~~~~~~~ei~~~v~~~~~ 309 (335)
T PF04007_consen 268 TPAISCFPGKLLAVDKYLI--EKGLLYHSTDPDEIVEYVRKNLG 309 (335)
T ss_pred CCEEEecCCcchhHHHHHH--HCCCeEecCCHHHHHHHHHHhhh
Confidence 999986433 3445553 45889999999999986666554
No 122
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=98.18 E-value=2.9e-05 Score=97.50 Aligned_cols=182 Identities=10% Similarity=-0.017 Sum_probs=128.3
Q ss_pred CCCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCcc------HHHHHHHHHHcCC
Q 001292 407 FLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGY------NDALQEVASRLGL 480 (1106)
Q Consensus 407 L~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY------~eeLkeLaeklGL 480 (1106)
+.++.++|+++.|+.. .|+.++++..+.+|..-. .+...+++ +|++|.+...| ...+.++++...+
T Consensus 474 ldpd~ltigfarRfa~----YKR~~Lil~dl~rl~~il---~~~~~pvQ-~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~ 545 (778)
T cd04299 474 LDPNVLTIGFARRFAT----YKRATLLLRDPERLKRLL---NDPERPVQ-FIFAGKAHPADEPGKELIQEIVEFSRRPEF 545 (778)
T ss_pred cCCCccEEeeeecchh----hhhHHHHHHHHHHHHHHh---hCCCCCeE-EEEEEecCccchHHHHHHHHHHHHHhCcCC
Confidence 4577789999999988 778899999988775321 11113466 68899865332 3366666665556
Q ss_pred CCCcEEEcC-Chh-hHHHHHHHcCeEEEccC--CCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcC----
Q 001292 481 LEHSVRHYG-FNG-DVNGVLLMADIVLYGSS--QVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQK---- 552 (1106)
Q Consensus 481 ~d~rV~flG-~~e-DL~~LyaaADVfV~PS~--~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~---- 552 (1106)
.+ +|.|+- +.. -...+++.|||.++||. +| ..|.+=+-||..|.+.+++--|-..|.- ++.||+.+..
T Consensus 546 ~~-kVvfle~Yd~~lA~~LvaG~DvwLn~prrp~E--AsGTSgMKA~~NG~LnlSvlDGww~E~~-~g~nGwaig~~~~~ 621 (778)
T cd04299 546 RG-RIVFLEDYDMALARHLVQGVDVWLNTPRRPLE--ASGTSGMKAALNGGLNLSVLDGWWDEGY-DGENGWAIGDGDEY 621 (778)
T ss_pred CC-cEEEEcCCCHHHHHHHHhhhhhcccCCCCCCC--CCccchHHHHHcCCeeeecccCcccccc-CCCCceEeCCCccc
Confidence 65 777765 544 45689999999999999 76 9999999999999999999888888877 7889999987
Q ss_pred --------CCHHHHHHHHHHHHh----C------cccHHHHHHHHHHHHHHHH-HhcHHHHHHHHHH-HHH
Q 001292 553 --------DNPEGLSRAFSLFIS----N------GKLSKFARTVASAGRLHAK-NMLALDCVTRYAR-ILE 603 (1106)
Q Consensus 553 --------~D~eeLAeAI~~LLs----D------pelRk~r~~mGe~Are~ak-e~fsee~v~~Y~e-Lye 603 (1106)
.|.++|.+.|.+-+- + |..+ .+|.+++...+. .+.|..++..|.+ .|.
T Consensus 622 ~~~~~~d~~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W---~~~~k~sm~~~~p~fs~~Rmv~eY~~~~Y~ 689 (778)
T cd04299 622 EDDEYQDAEEAEALYDLLENEVIPLFYDRDEGGYPPGW---VAMMKHSMATLGPRFSAERMVREYVERFYL 689 (778)
T ss_pred cChhhcchhhHHHHHHHHHHHHHHHHhcCCCCCCCHHH---HHHHHHHHHhcccCCCHHHHHHHHHHHhHH
Confidence 456666666644222 3 4433 455555555543 4445666776655 443
No 123
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.01 E-value=0.0024 Score=72.52 Aligned_cols=81 Identities=16% Similarity=0.057 Sum_probs=62.5
Q ss_pred cEEEcCCh-hhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCch------hhhccCCeEEEEcCCCHH
Q 001292 484 SVRHYGFN-GDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIK------EYVAEGAQVIFFQKDNPE 556 (1106)
Q Consensus 484 rV~flG~~-eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~------EiV~Dg~nG~LV~~~D~e 556 (1106)
+|.+.++. +++..+|..||++|.-+ ...++.||+++|+|+|.....+.. ..+.+...|..++..+.
T Consensus 230 ~v~~~~~~~~~~~~~l~~ad~vI~~~------G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~~- 302 (321)
T TIGR00661 230 NVEIRRITTDNFKELIKNAELVITHG------GFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKEL- 302 (321)
T ss_pred CEEEEECChHHHHHHHHhCCEEEECC------ChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhhH-
Confidence 78888876 58999999999999764 235799999999999998776533 34656567888877777
Q ss_pred HHHHHHHHHHhCccc
Q 001292 557 GLSRAFSLFISNGKL 571 (1106)
Q Consensus 557 eLAeAI~~LLsDpel 571 (1106)
++.+++...++|+..
T Consensus 303 ~~~~~~~~~~~~~~~ 317 (321)
T TIGR00661 303 RLLEAILDIRNMKRY 317 (321)
T ss_pred HHHHHHHhccccccc
Confidence 677777777776653
No 124
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.91 E-value=0.00035 Score=80.81 Aligned_cols=249 Identities=17% Similarity=0.140 Sum_probs=126.4
Q ss_pred HHHHHhhccCccEEEEcc-ccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCC----cccccchhhhhhhHHhHHHHHH
Q 001292 274 GQISILGQEQYSLIDWSI-FDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQED----SLANRLPVYVERGFQNLLSYWK 348 (1106)
Q Consensus 274 ~lvkiIr~~~pDiIh~~~-~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna----~Ls~r~~~Y~~~gleklis~~~ 348 (1106)
.+-.++...+||.|-.+. -...+...++... .+||+ .++|+. ....-.. +.....
T Consensus 58 ~~~~~~~~~~Pd~Vlv~GD~~~~la~alaA~~----------~~ipv-~HieaGlRs~d~~~g~~-------de~~R~-- 117 (346)
T PF02350_consen 58 ELADVLEREKPDAVLVLGDRNEALAAALAAFY----------LNIPV-AHIEAGLRSGDRTEGMP-------DEINRH-- 117 (346)
T ss_dssp HHHHHHHHHT-SEEEEETTSHHHHHHHHHHHH----------TT-EE-EEES-----S-TTSSTT-------HHHHHH--
T ss_pred HHHHHHHhcCCCEEEEEcCCchHHHHHHHHHH----------hCCCE-EEecCCCCccccCCCCc-------hhhhhh--
Confidence 356677778999777754 3344555555542 68994 456664 2111111 111111
Q ss_pred HHhccccEEEecCCChhhh--hcCCCCCCEEEeCCCCCCcccccccCcchhHHHH-HHHc-CCCCCcEEEEEEcccCccc
Q 001292 349 SVFSRVNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQL-RKEN-GFLKDEIVVVVVGSSFFYN 424 (1106)
Q Consensus 349 ~~l~~AD~VIa~S~~~~~~--~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~L-R~~l-GL~~d~~VIL~VGRl~~y~ 424 (1106)
.+=+.+++.++++....+. ..|.++.+|.+++|.++|.. ........... .... ...++.++++..=+...
T Consensus 118 ~i~~la~lhf~~t~~~~~~L~~~G~~~~rI~~vG~~~~D~l---~~~~~~~~~~~~~~~i~~~~~~~~iLvt~H~~t~-- 192 (346)
T PF02350_consen 118 AIDKLAHLHFAPTEEARERLLQEGEPPERIFVVGNPGIDAL---LQNKEEIEEKYKNSGILQDAPKPYILVTLHPVTN-- 192 (346)
T ss_dssp HHHHH-SEEEESSHHHHHHHHHTT--GGGEEE---HHHHHH---HHHHHTTCC-HHHHHHHHCTTSEEEEEE-S-CCC--
T ss_pred hhhhhhhhhccCCHHHHHHHHhcCCCCCeEEEEChHHHHHH---HHhHHHHhhhhhhHHHHhccCCCEEEEEeCcchh--
Confidence 1123577888887655544 66888999999999878752 11000000011 1111 11334434433322111
Q ss_pred cc-cCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCCh--hhHHHHHHHc
Q 001292 425 EL-SWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFN--GDVNGVLLMA 501 (1106)
Q Consensus 425 kg-~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~--eDL~~LyaaA 501 (1106)
.. ......+.++++.|.+ . +++.+++.+++.|.. ...+.+...++ + +|.+..+. .++..+++.|
T Consensus 193 ~~~~~~~~~i~~~l~~L~~----~----~~~~vi~~~hn~p~~-~~~i~~~l~~~---~-~v~~~~~l~~~~~l~ll~~a 259 (346)
T PF02350_consen 193 EDNPERLEQILEALKALAE----R----QNVPVIFPLHNNPRG-SDIIIEKLKKY---D-NVRLIEPLGYEEYLSLLKNA 259 (346)
T ss_dssp CTHH--HHHHHHHHHHHHH----H----TTEEEEEE--S-HHH-HHHHHHHHTT----T-TEEEE----HHHHHHHHHHE
T ss_pred cCChHHHHHHHHHHHHHHh----c----CCCcEEEEecCCchH-HHHHHHHhccc---C-CEEEECCCCHHHHHHHHhcc
Confidence 11 1123444444444432 2 455655555544542 45555555533 3 78888855 6889999999
Q ss_pred CeEEEccCCCCCCCcHHHH-HHHHhCCCEEec-CCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcc
Q 001292 502 DIVLYGSSQVEQGFPSLIV-RAMTFGIPVITP-DFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGK 570 (1106)
Q Consensus 502 DVfV~PS~~EeEGFGlvLL-EAMA~G~PVIAS-D~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpe 570 (1106)
+++|-=| | .+. ||.++|+|||.- +.+.-.+.+..+.+- ++. .|++++.++|.+++++++
T Consensus 260 ~~vvgdS-------s-GI~eEa~~lg~P~v~iR~~geRqe~r~~~~nv-lv~-~~~~~I~~ai~~~l~~~~ 320 (346)
T PF02350_consen 260 DLVVGDS-------S-GIQEEAPSLGKPVVNIRDSGERQEGRERGSNV-LVG-TDPEAIIQAIEKALSDKD 320 (346)
T ss_dssp SEEEESS-------H-HHHHHGGGGT--EEECSSS-S-HHHHHTTSEE-EET-SSHHHHHHHHHHHHH-HH
T ss_pred eEEEEcC-------c-cHHHHHHHhCCeEEEecCCCCCHHHHhhcceE-EeC-CCHHHHHHHHHHHHhChH
Confidence 9988443 3 455 999999999998 445556666666554 466 799999999999998744
No 125
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.85 E-value=0.0022 Score=72.30 Aligned_cols=274 Identities=14% Similarity=0.088 Sum_probs=155.7
Q ss_pred hhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHHHHHhH--------------------------HHHHhhccCccEEEE
Q 001292 236 SRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLWEQIAG--------------------------QISILGQEQYSLIDW 289 (1106)
Q Consensus 236 Gesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r~lg~--------------------------lvkiIr~~~pDiIh~ 289 (1106)
+..-+.-+++..|+++|++|.++|-..+...+..+.+|. +.+++...++|+.--
T Consensus 11 ~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~ygf~~~~Igk~g~~tl~~Kl~~~~eR~~~L~ki~~~~kpdv~i~ 90 (346)
T COG1817 11 PHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYGFPYKSIGKHGGVTLKEKLLESAERVYKLSKIIAEFKPDVAIG 90 (346)
T ss_pred chhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHhCCCeEeecccCCccHHHHHHHHHHHHHHHHHHHhhcCCceEee
Confidence 455677899999999999999999876665555554432 233344444443222
Q ss_pred ccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecCCChhhh--
Q 001292 290 SIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPML-- 367 (1106)
Q Consensus 290 ~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~~~~~~-- 367 (1106)
- .+.-+.++.. ..++|.|+...+- .....-+.++..|+.++.+.......
T Consensus 91 ~--~s~~l~rvaf-----------gLg~psIi~~D~e---------------hA~~qnkl~~Pla~~ii~P~~~~~~~~~ 142 (346)
T COG1817 91 K--HSPELPRVAF-----------GLGIPSIIFVDNE---------------HAEAQNKLTLPLADVIITPEAIDEEELL 142 (346)
T ss_pred c--CCcchhhHHh-----------hcCCceEEecCCh---------------hHHHHhhcchhhhhheecccccchHHHH
Confidence 0 0111222221 1355655542221 11111124567788999987555433
Q ss_pred hcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEE--EcccCccccccCCHHHHHHHHHHhHHHHH
Q 001292 368 YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVV--VGSSFFYNELSWDYAVAMHDVGPLLIKYA 445 (1106)
Q Consensus 368 ~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~--VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~a 445 (1106)
..|.++.++.-.++. ..+.....|.|+ .+.-+++|+.++.+.|++ ...-..|..+.++...+.+.++.+.+
T Consensus 143 ~~G~~p~~i~~~~gi-ae~~~v~~f~pd---~evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k--- 215 (346)
T COG1817 143 DFGADPNKISGYNGI-AELANVYGFVPD---PEVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVLPDLIKELKK--- 215 (346)
T ss_pred HhCCCccceecccce-eEEeecccCCCC---HHHHHHcCCCCCCceEEEeeccccceeeccccchhhHHHHHHHHHh---
Confidence 456565555444432 222111335554 345668999886444432 12122355566666666666655431
Q ss_pred hhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHh
Q 001292 446 RRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTF 525 (1106)
Q Consensus 446 klk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~ 525 (1106)
.- ++++++.. +.++..+ |+. +++.....-|-..++--|++++- +.|.-.-||++.
T Consensus 216 --------~g-iV~ipr~~-----~~~eife--~~~--n~i~pk~~vD~l~Llyya~lvig-------~ggTMarEaAlL 270 (346)
T COG1817 216 --------YG-IVLIPREK-----EQAEIFE--GYR--NIIIPKKAVDTLSLLYYATLVIG-------AGGTMAREAALL 270 (346)
T ss_pred --------Cc-EEEecCch-----hHHHHHh--hhc--cccCCcccccHHHHHhhhheeec-------CCchHHHHHHHh
Confidence 11 35666543 2334444 333 34434445565566667888772 446778899999
Q ss_pred CCCEEecCCC---CchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCccc
Q 001292 526 GIPVITPDFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKL 571 (1106)
Q Consensus 526 G~PVIASD~g---GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpel 571 (1106)
|+|.|+..-| ++.+++ -+.|.++...|+.+..+...+++.++.+
T Consensus 271 GtpaIs~~pGkll~vdk~l--ie~G~~~~s~~~~~~~~~a~~~l~~~~~ 317 (346)
T COG1817 271 GTPAISCYPGKLLAVDKYL--IEKGLLYHSTDEIAIVEYAVRNLKYRRL 317 (346)
T ss_pred CCceEEecCCccccccHHH--HhcCceeecCCHHHHHHHHHHHhhchhh
Confidence 9999998633 355555 3478899888988888888888877753
No 126
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=97.80 E-value=0.00061 Score=67.02 Aligned_cols=119 Identities=18% Similarity=0.195 Sum_probs=77.2
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchH-----------------HHHH--HhHHHHHhhccCc
Q 001292 224 RIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHS-----------------LWEQ--IAGQISILGQEQY 284 (1106)
Q Consensus 224 RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~-----------------i~r~--lg~lvkiIr~~~p 284 (1106)
||+++.... +.++.++++.|++.|++|++++..+..... .... ...+.++++..+|
T Consensus 1 KIl~i~~~~-----~~~~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~~~i~~~~~~~~~k~~~~~~~~~~l~k~ik~~~~ 75 (139)
T PF13477_consen 1 KILLIGNTP-----STFIYNLAKELKKRGYDVHIITPRNDYEKYEIIEGIKVIRLPSPRKSPLNYIKYFRLRKIIKKEKP 75 (139)
T ss_pred CEEEEecCc-----HHHHHHHHHHHHHCCCEEEEEEcCCCchhhhHhCCeEEEEecCCCCccHHHHHHHHHHHHhccCCC
Confidence 456655443 357889999999999999999985542100 1111 1136778888999
Q ss_pred cEEEEccccH-HHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecC
Q 001292 285 SLIDWSIFDG-IIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPD 361 (1106)
Q Consensus 285 DiIh~~~~~~-i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S 361 (1106)
|+||+|.... .++..++++.. ..+|+|++.|+........... +.+++. ...++++|.++++|
T Consensus 76 DvIh~h~~~~~~~~~~l~~~~~---------~~~~~i~~~hg~~~~~~~~~~~---~~~~~~--~~~~k~~~~ii~~~ 139 (139)
T PF13477_consen 76 DVIHCHTPSPYGLFAMLAKKLL---------KNKKVIYTVHGSDFYNSSKKKK---LKKFII--KFAFKRADKIIVQS 139 (139)
T ss_pred CEEEEecCChHHHHHHHHHHHc---------CCCCEEEEecCCeeecCCchHH---HHHHHH--HHHHHhCCEEEEcC
Confidence 9999999876 56676666431 3389999999865422211100 122222 34678999998875
No 127
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.51 E-value=0.0098 Score=66.55 Aligned_cols=280 Identities=14% Similarity=0.116 Sum_probs=147.8
Q ss_pred CEEEEEeCCC-CC-ChhHHHHHHHHHHHHHCCCEEEEEEcCCCC--chHHHHHHhH----HHHHhhccCccEEEE--ccc
Q 001292 223 PRIGLILGNM-AK-DSRSLLLITVVKNLQKLGYVFKIYAVRSGN--SHSLWEQIAG----QISILGQEQYSLIDW--SIF 292 (1106)
Q Consensus 223 ~RIalVlg~L-~~-gGesl~vv~LakaLqe~GyeVtV~t~~dg~--~~~i~r~lg~----lvkiIr~~~pDiIh~--~~~ 292 (1106)
++|++++..- .. .|-......||+.|.+.|..+..++..+.. ....|+.++. .-..|+..++|++.+ ...
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~~~~~f~~~~~~~~n~ik~~k~d~lI~Dsygl 80 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHKVYEGFKVLEGRGNNLIKEEKFDLLIFDSYGL 80 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhhhhhhhhhhccceeeecccccccccCCEEEEeccCC
Confidence 4677776443 33 355667789999999999888888776521 2235544332 223566677775544 444
Q ss_pred cHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecCCChhhhhcCCC
Q 001292 293 DGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPMLYSVLD 372 (1106)
Q Consensus 293 ~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~~~~~~~~gi~ 372 (1106)
..-.+..+... .+.|+|+. +...... .. ..|.++-.... ...+.+.-
T Consensus 81 ~~dd~k~ik~e-----------~~~k~l~f--Dd~~~~~-~~------------------d~d~ivN~~~~-a~~~y~~v 127 (318)
T COG3980 81 NADDFKLIKEE-----------AGSKILIF--DDENAKS-FK------------------DNDLIVNAILN-ANDYYGLV 127 (318)
T ss_pred CHHHHHHHHHH-----------hCCcEEEe--cCCCccc-hh------------------hhHhhhhhhhc-chhhcccc
Confidence 44444444421 45666665 2211111 11 11122222212 11222333
Q ss_pred CCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCC
Q 001292 373 AGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEG 452 (1106)
Q Consensus 373 ~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~P 452 (1106)
+.+..+..+.+.-+ ..+ +-..+|+..-..+.+-+++..|...+ | .+.++.++.|.+ ..-
T Consensus 128 ~~k~~~~lGp~y~~-----lr~--eF~~~r~~~~~r~~r~ilI~lGGsDp-----k--~lt~kvl~~L~~-------~~~ 186 (318)
T COG3980 128 PNKTRYYLGPGYAP-----LRP--EFYALREENTERPKRDILITLGGSDP-----K--NLTLKVLAELEQ-------KNV 186 (318)
T ss_pred CcceEEEecCCcee-----ccH--HHHHhHHHHhhcchheEEEEccCCCh-----h--hhHHHHHHHhhc-------cCe
Confidence 33443433322211 111 11222333222233436666664332 2 245555554432 112
Q ss_pred CeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCC--EE
Q 001292 453 SFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIP--VI 530 (1106)
Q Consensus 453 dikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~P--VI 530 (1106)
+++ +++|..... .+.+.+.+++ .+ ++.+.-..++|.+++..||+.+.. .|.++.||...|+| ||
T Consensus 187 nl~--iV~gs~~p~-l~~l~k~~~~---~~-~i~~~~~~~dma~LMke~d~aI~A-------aGstlyEa~~lgvP~l~l 252 (318)
T COG3980 187 NLH--IVVGSSNPT-LKNLRKRAEK---YP-NINLYIDTNDMAELMKEADLAISA-------AGSTLYEALLLGVPSLVL 252 (318)
T ss_pred eEE--EEecCCCcc-hhHHHHHHhh---CC-CeeeEecchhHHHHHHhcchheec-------cchHHHHHHHhcCCceEE
Confidence 444 677854432 3556666653 33 788888889999999999999854 37899999999999 33
Q ss_pred e--cCCCCchhhhccCCeEEEEcC---CCHHHHHHHHHHHHhCcccH
Q 001292 531 T--PDFPIIKEYVAEGAQVIFFQK---DNPEGLSRAFSLFISNGKLS 572 (1106)
Q Consensus 531 A--SD~gGI~EiV~Dg~nG~LV~~---~D~eeLAeAI~~LLsDpelR 572 (1106)
+ .|.......+.. -|+.... -........+.++.+|+.+|
T Consensus 253 ~~a~NQ~~~a~~f~~--lg~~~~l~~~l~~~~~~~~~~~i~~d~~~r 297 (318)
T COG3980 253 PLAENQIATAKEFEA--LGIIKQLGYHLKDLAKDYEILQIQKDYARR 297 (318)
T ss_pred eeeccHHHHHHHHHh--cCchhhccCCCchHHHHHHHHHhhhCHHHh
Confidence 3 344333333322 2332222 24566777888888888873
No 128
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.45 E-value=0.38 Score=57.68 Aligned_cols=227 Identities=10% Similarity=0.063 Sum_probs=116.6
Q ss_pred CCCcEEEEEcCCc-ccccchhhhhhhHHhHHHHHHHHhccccEEEecCCChhhh--hcCCCCCCEEEeCCCCCCcccccc
Q 001292 315 HSIPLVWIIQEDS-LANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAVEA 391 (1106)
Q Consensus 315 ~gIPVI~tIHna~-Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~~~~~~--~~gi~~~KI~VIpN~GVDl~~~e~ 391 (1106)
.++|+++.-++.+ +.... .+ ...+..++++|.|.+-+....+. ..+++..++.+.+-.-+-+
T Consensus 147 ~gkpv~l~gqsiGPf~~~~--------~r--~l~r~vl~~~~~ItvRD~~S~~~Lk~lGv~~~~v~~~aDpAF~L----- 211 (426)
T PRK10017 147 AKKPLYMIGHSVGPFQDEQ--------FN--QLANYVFGHCDALILRESVSLDLMKRSNITTAKVEHGVDTAWLV----- 211 (426)
T ss_pred cCCCEEEECCcCCCcCCHH--------HH--HHHHHHHhcCCEEEEccHHHHHHHHHhCCCccceEEecChhhhC-----
Confidence 6789888866632 22111 11 11234678999998876544443 4577767777766421211
Q ss_pred cCcch-h---HHHHHHHcCCCCCcEEEEEEcc-cCcccccc-CCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcC---
Q 001292 392 YSKSH-E---KYQLRKENGFLKDEIVVVVVGS-SFFYNELS-WDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGN--- 462 (1106)
Q Consensus 392 F~ps~-s---~~~LR~~lGL~~d~~VIL~VGR-l~~y~kg~-Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~--- 462 (1106)
++.. . ...+...++...+..+|++.-| ....++.. .......+.+.++.+.+. .++-++.|+-.+..
T Consensus 212 -~~~~~~~~~~~~~~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li---~~g~~Vv~lp~~~~~~~ 287 (426)
T PRK10017 212 -DHHTEDFTASYAVQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRII---DEGYQVIALSTCTGIDS 287 (426)
T ss_pred -CccccccccchhhhhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHH---HCCCeEEEEecccCccC
Confidence 1110 0 0111112222223334444323 21111100 011223344444444332 22334433222210
Q ss_pred -CCCccHHHHHHHHHHcCCCCCcEEE-cC--ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCC----
Q 001292 463 -STDGYNDALQEVASRLGLLEHSVRH-YG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDF---- 534 (1106)
Q Consensus 463 -GperY~eeLkeLaeklGL~d~rV~f-lG--~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~---- 534 (1106)
+++. ....+++.+.+.-+. ++++ .+ ...++..+++.||++| ++.. |.++=|++.|+|+|+-..
T Consensus 288 ~~~dD-~~~~~~l~~~~~~~~-~~~vi~~~~~~~e~~~iIs~~dl~i-g~Rl------Ha~I~a~~~gvP~i~i~Y~~K~ 358 (426)
T PRK10017 288 YNKDD-RMVALNLRQHVSDPA-RYHVVMDELNDLEMGKILGACELTV-GTRL------HSAIISMNFGTPAIAINYEHKS 358 (426)
T ss_pred CCCch-HHHHHHHHHhccccc-ceeEecCCCChHHHHHHHhhCCEEE-Eecc------hHHHHHHHcCCCEEEeeehHHH
Confidence 1221 233456666655433 3443 32 3357889999999977 5455 889999999999998743
Q ss_pred CCchhhhccCCeEEEEcC--CCHHHHHHHHHHHHhCccc
Q 001292 535 PIIKEYVAEGAQVIFFQK--DNPEGLSRAFSLFISNGKL 571 (1106)
Q Consensus 535 gGI~EiV~Dg~nG~LV~~--~D~eeLAeAI~~LLsDpel 571 (1106)
.++-+.+ +...++++. -+.++|.+.+.++++|.+.
T Consensus 359 ~~~~~~l--g~~~~~~~~~~l~~~~Li~~v~~~~~~r~~ 395 (426)
T PRK10017 359 AGIMQQL--GLPEMAIDIRHLLDGSLQAMVADTLGQLPA 395 (426)
T ss_pred HHHHHHc--CCccEEechhhCCHHHHHHHHHHHHhCHHH
Confidence 3344444 323343443 3577899999999998764
No 129
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=97.41 E-value=0.016 Score=65.91 Aligned_cols=169 Identities=17% Similarity=0.221 Sum_probs=109.6
Q ss_pred cEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcC--CCCccHHHHHHHHHHcCCCCCcEEEc
Q 001292 411 EIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGN--STDGYNDALQEVASRLGLLEHSVRHY 488 (1106)
Q Consensus 411 ~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~--GperY~eeLkeLaeklGL~d~rV~fl 488 (1106)
..+.+.+|.... ...++..+|+++.+.. +.++++++-.|- |.+.|.+++.+.+.++--.+ ++..+
T Consensus 145 ~~~tIlvGNSgd---~SN~Hie~L~~l~~~~---------~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~-~~~~L 211 (322)
T PRK02797 145 GKMTILVGNSGD---RSNRHIEALRALHQQF---------GDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAE-NFQIL 211 (322)
T ss_pred CceEEEEeCCCC---CcccHHHHHHHHHHHh---------CCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcc-cEEeh
Confidence 346666776443 2457877777775443 256775455555 66778999999998887645 67766
Q ss_pred C---ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec-CCCCchhhhccCCeEEEEcCCCHHHHHHHHHH
Q 001292 489 G---FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP-DFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSL 564 (1106)
Q Consensus 489 G---~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS-D~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~ 564 (1106)
- +.+|...+++.||+.++-.... +|.|+. +=.+.+|+||+.+ +++-..++.+.+ .-++++.++ |-.++.
T Consensus 212 ~e~l~f~eYl~lL~~~Dl~~f~~~RQ-QgiGnl-~lLi~~G~~v~l~r~n~fwqdl~e~g-v~Vlf~~d~---L~~~~v- 284 (322)
T PRK02797 212 TEKLPFDDYLALLRQCDLGYFIFARQ-QGIGTL-CLLIQLGKPVVLSRDNPFWQDLTEQG-LPVLFTGDD---LDEDIV- 284 (322)
T ss_pred hhhCCHHHHHHHHHhCCEEEEeechh-hHHhHH-HHHHHCCCcEEEecCCchHHHHHhCC-CeEEecCCc---ccHHHH-
Confidence 6 4489999999999999987664 577654 5589999999998 556566655444 334454333 211111
Q ss_pred HHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhc
Q 001292 565 FISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILENVLN 607 (1106)
Q Consensus 565 LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLyeslLk 607 (1106)
++..++++..-++.+. +|.++.++.+.++++....
T Consensus 285 -------~e~~rql~~~dk~~I~-Ff~pn~~~~W~~~l~~~~g 319 (322)
T PRK02797 285 -------REAQRQLASVDKNIIA-FFSPNYLQGWRNALAIAAG 319 (322)
T ss_pred -------HHHHHHHHhhCcceee-ecCHhHHHHHHHHHHHhhC
Confidence 0112334445445554 7778888899999987654
No 130
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=97.40 E-value=0.0067 Score=70.48 Aligned_cols=50 Identities=20% Similarity=0.266 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec
Q 001292 469 DALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP 532 (1106)
Q Consensus 469 eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS 532 (1106)
+.+++...+. . .+.+.+ +..++|+.||+++..| |.+.+|++.+|+|.|..
T Consensus 211 ~~i~~~~~~~--~--~~~~~~---~~~~~m~~aDlal~~S-------GT~TLE~al~g~P~Vv~ 260 (347)
T PRK14089 211 KDLKEIYGDI--S--EFEISY---DTHKALLEAEFAFICS-------GTATLEAALIGTPFVLA 260 (347)
T ss_pred HHHHHHHhcC--C--CcEEec---cHHHHHHhhhHHHhcC-------cHHHHHHHHhCCCEEEE
Confidence 5566655432 2 344443 5678999999999776 67777999999999985
No 131
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=97.38 E-value=0.023 Score=67.42 Aligned_cols=86 Identities=21% Similarity=0.204 Sum_probs=69.1
Q ss_pred CCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec----CCCCchhhhccCCeEEEEc--C
Q 001292 479 GLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP----DFPIIKEYVAEGAQVIFFQ--K 552 (1106)
Q Consensus 479 GL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS----D~gGI~EiV~Dg~nG~LV~--~ 552 (1106)
++++ ++...++. ....++..||++|.. |.-.++.||+.+|+|+|+- |.....+.+++-..|...+ .
T Consensus 281 ~~p~-n~~v~~~~-p~~~~l~~ad~vI~h------GG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~ 352 (406)
T COG1819 281 NVPD-NVIVADYV-PQLELLPRADAVIHH------GGAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEE 352 (406)
T ss_pred cCCC-ceEEecCC-CHHHHhhhcCEEEec------CCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecCccc
Confidence 5665 78888865 344599999999976 4457899999999999986 4445667777777898777 5
Q ss_pred CCHHHHHHHHHHHHhCcccH
Q 001292 553 DNPEGLSRAFSLFISNGKLS 572 (1106)
Q Consensus 553 ~D~eeLAeAI~~LLsDpelR 572 (1106)
.+++.|+++|.++++|+..+
T Consensus 353 l~~~~l~~av~~vL~~~~~~ 372 (406)
T COG1819 353 LTEERLRAAVNEVLADDSYR 372 (406)
T ss_pred CCHHHHHHHHHHHhcCHHHH
Confidence 78999999999999999873
No 132
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=97.15 E-value=0.0051 Score=71.09 Aligned_cols=227 Identities=14% Similarity=0.073 Sum_probs=110.2
Q ss_pred CCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecCCChhhh---hcCCCCCCEEEeCCCCCCccccc
Q 001292 314 FHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPML---YSVLDAGNFFVIPGSPADVWAVE 390 (1106)
Q Consensus 314 ~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~~~~~~---~~gi~~~KI~VIpN~GVDl~~~e 390 (1106)
..+.++|.+.|+.++..-....... ..............|.+++.+...... ..+++.+++.+++..-.|.
T Consensus 97 ~~~~~~i~lwHG~~~K~~g~~~~~~--~~~~~~~~~~~~~~d~~~~~s~~~~~~~~~~f~~~~~~i~~~G~PR~D~---- 170 (369)
T PF04464_consen 97 RKNQKYIQLWHGIPLKKIGYDSPDN--KNYRKNYKRNYRNYDYFIVSSEFEKEIFKKAFGYPEDKILVTGYPRNDY---- 170 (369)
T ss_dssp -TTSEEEE--SS--SB--GGG-S-----TS-HHHHHHHTT-SEEEESSHHHHHHHHHHTT--GGGEEES--GGGHH----
T ss_pred CCCcEEEEecCCCcccccchhcccc--ccchhhhhhhccCCcEEEECCHHHHHHHHHHhccCcceEEEeCCCeEhH----
Confidence 3567899999998655422111000 000112334567889999998765554 3466777787776544453
Q ss_pred ccCcch-hHHHHHHHcCCCCCcEEEEEEcccCccccc--cCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCcc
Q 001292 391 AYSKSH-EKYQLRKENGFLKDEIVVVVVGSSFFYNEL--SWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGY 467 (1106)
Q Consensus 391 ~F~ps~-s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg--~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY 467 (1106)
.+.... ....+++.++++.++.+|+++-........ .+.....++ +..|. .+. .+++. +++--||..
T Consensus 171 l~~~~~~~~~~i~~~~~~~~~~k~ILyaPT~R~~~~~~~~~~~~~~~~-~~~l~----~~~--~~~~~--li~k~Hp~~- 240 (369)
T PF04464_consen 171 LFNKSKENRNRIKKKLGIDKDKKVILYAPTWRDNSSNEYFKFFFSDLD-FEKLN----FLL--KNNYV--LIIKPHPNM- 240 (369)
T ss_dssp HHHSTT-HHHHHHHHTT--SS-EEEEEE----GGG--GGSS----TT--HHHHH----HHH--TTTEE--EEE--SHHH-
T ss_pred HhccCHHHHHHHHHHhccCCCCcEEEEeeccccccccccccccccccC-HHHHH----HHh--CCCcE--EEEEeCchh-
Confidence 333322 246778889999898899998532211100 001111111 11221 011 14553 455556531
Q ss_pred HHHHHHHHHH-cCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec--CCCC-------c
Q 001292 468 NDALQEVASR-LGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP--DFPI-------I 537 (1106)
Q Consensus 468 ~eeLkeLaek-lGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS--D~gG-------I 537 (1106)
...... ....+ +|.+.....++.+++..||++|. -++-++.|++.+++|||.. |... .
T Consensus 241 ----~~~~~~~~~~~~-~i~~~~~~~~~~~ll~~aDiLIT-------DySSi~fD~~~l~KPiify~~D~~~Y~~~rg~~ 308 (369)
T PF04464_consen 241 ----KKKFKDFKEDNS-NIIFVSDNEDIYDLLAAADILIT-------DYSSIIFDFLLLNKPIIFYQPDLEEYEKERGFY 308 (369)
T ss_dssp ----HTT----TT-TT-TEEE-TT-S-HHHHHHT-SEEEE-------SS-THHHHHGGGT--EEEE-TTTTTTTTTSSBS
T ss_pred ----hhchhhhhccCC-cEEECCCCCCHHHHHHhcCEEEE-------echhHHHHHHHhCCCEEEEeccHHHHhhccCCC
Confidence 111111 23344 89888877799999999999883 3457899999999999954 4321 1
Q ss_pred hhhhccCCeEEEEcCCCHHHHHHHHHHHHhCccc
Q 001292 538 KEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKL 571 (1106)
Q Consensus 538 ~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpel 571 (1106)
.+ ..+...|..+ .+.++|.++|..+++++..
T Consensus 309 ~~-~~~~~pg~~~--~~~~eL~~~i~~~~~~~~~ 339 (369)
T PF04464_consen 309 FD-YEEDLPGPIV--YNFEELIEAIENIIENPDE 339 (369)
T ss_dssp S--TTTSSSS-EE--SSHHHHHHHHTTHHHHHHH
T ss_pred Cc-hHhhCCCcee--CCHHHHHHHHHhhhhCCHH
Confidence 22 2222345555 5899999999999887654
No 133
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=97.01 E-value=0.00013 Score=74.88 Aligned_cols=105 Identities=21% Similarity=0.349 Sum_probs=67.2
Q ss_pred EEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCC
Q 001292 455 KFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDF 534 (1106)
Q Consensus 455 kfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~ 534 (1106)
++++++|.... +....... +... +|.+.++.+++..+|+.||++|.- +++.++.|++++|+|.|.-..
T Consensus 33 ~viv~~G~~~~---~~~~~~~~--~~~~-~v~~~~~~~~m~~~m~~aDlvIs~------aG~~Ti~E~l~~g~P~I~ip~ 100 (167)
T PF04101_consen 33 QVIVQTGKNNY---EELKIKVE--NFNP-NVKVFGFVDNMAELMAAADLVISH------AGAGTIAEALALGKPAIVIPL 100 (167)
T ss_dssp CCCCCCTTCEC---HHHCCCHC--CTTC-CCEEECSSSSHHHHHHHHSEEEEC------S-CHHHHHHHHCT--EEEE--
T ss_pred EEEEEECCCcH---HHHHHHHh--ccCC-cEEEEechhhHHHHHHHcCEEEeC------CCccHHHHHHHcCCCeeccCC
Confidence 44567777632 23322222 2223 799999999999999999998843 557899999999999987655
Q ss_pred CC--------chhhhccCCeEEEEcC--CCHHHHHHHHHHHHhCccc
Q 001292 535 PI--------IKEYVAEGAQVIFFQK--DNPEGLSRAFSLFISNGKL 571 (1106)
Q Consensus 535 gG--------I~EiV~Dg~nG~LV~~--~D~eeLAeAI~~LLsDpel 571 (1106)
+. ....+.....|..+.. .+++.|.++|..+++++..
T Consensus 101 ~~~~~~~q~~na~~~~~~g~~~~~~~~~~~~~~L~~~i~~l~~~~~~ 147 (167)
T PF04101_consen 101 PGAADNHQEENAKELAKKGAAIMLDESELNPEELAEAIEELLSDPEK 147 (167)
T ss_dssp TTT-T-CHHHHHHHHHHCCCCCCSECCC-SCCCHHHHHHCHCCCHH-
T ss_pred CCcchHHHHHHHHHHHHcCCccccCcccCCHHHHHHHHHHHHcCcHH
Confidence 54 2333433333433322 3467899999999998876
No 134
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=96.83 E-value=0.23 Score=57.47 Aligned_cols=304 Identities=10% Similarity=0.039 Sum_probs=160.1
Q ss_pred CCEEEEEeCCCCCChhHHHHHHHHHHHHHC--CCEEEEEEcCCCC--c-------------------------------h
Q 001292 222 PPRIGLILGNMAKDSRSLLLITVVKNLQKL--GYVFKIYAVRSGN--S-------------------------------H 266 (1106)
Q Consensus 222 ~~RIalVlg~L~~gGesl~vv~LakaLqe~--GyeVtV~t~~dg~--~-------------------------------~ 266 (1106)
.+||+|++.++..=|--.-...+|.+|.+. |.+|.+++..+-. + +
T Consensus 9 ~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~~gVd~V~LPsl~k~~~G~~~~~d~~~~l~ 88 (400)
T COG4671 9 RPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGPAGVDFVKLPSLIKGDNGEYGLVDLDGDLE 88 (400)
T ss_pred cceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCcccCceEecCceEecCCCceeeeecCCCHH
Confidence 459999999988878778888999999998 9999999863210 0 0
Q ss_pred HHHH-HHhHHHHHhhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcC--CcccccchhhhhhhHHhH
Q 001292 267 SLWE-QIAGQISILGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQE--DSLANRLPVYVERGFQNL 343 (1106)
Q Consensus 267 ~i~r-~lg~lvkiIr~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHn--a~Ls~r~~~Y~~~glekl 343 (1106)
...+ ....++..+..++||++..-.+...+..-+.+-. .-+++. +.+.+....+ +...........
T Consensus 89 e~~~~Rs~lil~t~~~fkPDi~IVd~~P~Glr~EL~ptL--~yl~~~---~t~~vL~lr~i~D~p~~~~~~w~~------ 157 (400)
T COG4671 89 ETKKLRSQLILSTAETFKPDIFIVDKFPFGLRFELLPTL--EYLKTT---GTRLVLGLRSIRDIPQELEADWRR------ 157 (400)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeccccchhhhhhHHH--HHHhhc---CCcceeehHhhhhchhhhccchhh------
Confidence 0000 0112566677789998877655554544444422 123333 2333333222 100000000000
Q ss_pred HHHHHHHhccccEEEecC-CChhhhhcC--CC---CCCEEEeCCCCCCccccc-ccCcchhHHHHHHHcCCCCCcEEEEE
Q 001292 344 LSYWKSVFSRVNVIVFPD-YTLPMLYSV--LD---AGNFFVIPGSPADVWAVE-AYSKSHEKYQLRKENGFLKDEIVVVV 416 (1106)
Q Consensus 344 is~~~~~l~~AD~VIa~S-~~~~~~~~g--i~---~~KI~VIpN~GVDl~~~e-~F~ps~s~~~LR~~lGL~~d~~VIL~ 416 (1106)
......+-+.-|.|.+.- ....+...+ +. ..|+..++- + . .. ...+.+. ..+ +++..+++.
T Consensus 158 ~~~~~~I~r~yD~V~v~GdP~f~d~~~~~~~~~~i~~k~~ytG~--v-q--~~~~~~~~p~------~~~-pE~~~Ilvs 225 (400)
T COG4671 158 AETVRLINRFYDLVLVYGDPDFYDPLTEFPFAPAIRAKMRYTGF--V-Q--RSLPHLPLPP------HEA-PEGFDILVS 225 (400)
T ss_pred hHHHHHHHHhheEEEEecCccccChhhcCCccHhhhhheeEeEE--e-e--ccCcCCCCCC------cCC-CccceEEEe
Confidence 011112223456665532 222222111 11 233433321 1 0 00 0000000 001 345667777
Q ss_pred EcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcC-CCCccHHHHHHHHHHcCCCCCcEEEcCChhhHH
Q 001292 417 VGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGN-STDGYNDALQEVASRLGLLEHSVRHYGFNGDVN 495 (1106)
Q Consensus 417 VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~-GperY~eeLkeLaeklGL~d~rV~flG~~eDL~ 495 (1106)
+| +|.-|.+++-.++.... ....-.+. .+++.|. -|+ +..+++.....-.+ +|.+.-+..++.
T Consensus 226 ~G------GG~dG~eLi~~~l~A~~----~l~~l~~~--~~ivtGP~MP~---~~r~~l~~~A~~~p-~i~I~~f~~~~~ 289 (400)
T COG4671 226 VG------GGADGAELIETALAAAQ----LLAGLNHK--WLIVTGPFMPE---AQRQKLLASAPKRP-HISIFEFRNDFE 289 (400)
T ss_pred cC------CChhhHHHHHHHHHHhh----hCCCCCcc--eEEEeCCCCCH---HHHHHHHHhcccCC-CeEEEEhhhhHH
Confidence 77 34556665555443221 11111122 3566665 343 44444444333333 799999999999
Q ss_pred HHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCch-hhhcc-------CCeEEEEcC-CCHHHHHHHHHHHH
Q 001292 496 GVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIK-EYVAE-------GAQVIFFQK-DNPEGLSRAFSLFI 566 (1106)
Q Consensus 496 ~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~-EiV~D-------g~nG~LV~~-~D~eeLAeAI~~LL 566 (1106)
.|++.|+.+|.-+-+ +++.|-+++|||.+.-.....+ |.+.- |-...|.+. -+++.||++|..++
T Consensus 290 ~ll~gA~~vVSm~GY------NTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l 363 (400)
T COG4671 290 SLLAGARLVVSMGGY------NTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADALKAAL 363 (400)
T ss_pred HHHHhhheeeecccc------hhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhcc
Confidence 999999999965444 7899999999998876544322 22211 223334332 35889999999998
Q ss_pred hCcc
Q 001292 567 SNGK 570 (1106)
Q Consensus 567 sDpe 570 (1106)
+-|.
T Consensus 364 ~~P~ 367 (400)
T COG4671 364 ARPS 367 (400)
T ss_pred cCCC
Confidence 8554
No 135
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=96.73 E-value=1.5 Score=51.12 Aligned_cols=165 Identities=13% Similarity=0.101 Sum_probs=102.1
Q ss_pred cEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCC--CccHHHHHHHHHHcCCCCCcEEEc
Q 001292 411 EIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNST--DGYNDALQEVASRLGLLEHSVRHY 488 (1106)
Q Consensus 411 ~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~Gp--erY~eeLkeLaeklGL~d~rV~fl 488 (1106)
..+-+.+|.... ...++..+++++++.. +.++++++-.|-|. +.|.+++.+.++++--.+ +|..+
T Consensus 184 ~~ltILvGNSgd---~sNnHieaL~~L~~~~---------~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~-~~~iL 250 (360)
T PF07429_consen 184 GKLTILVGNSGD---PSNNHIEALEALKQQF---------GDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAE-NFQIL 250 (360)
T ss_pred CceEEEEcCCCC---CCccHHHHHHHHHHhc---------CCCeEEEEECCCCCchHHHHHHHHHHHHHhcCcc-ceeEh
Confidence 345666665443 2446877777664422 24566444444443 458888888888775443 67665
Q ss_pred C---ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcC--CCHHHHHHHHH
Q 001292 489 G---FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQK--DNPEGLSRAFS 563 (1106)
Q Consensus 489 G---~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~--~D~eeLAeAI~ 563 (1106)
- +.+|..++++.||++++..... +|.|+ ++=.+.+|+||+.+...-.-..+.+..--+++.. -|...++++=.
T Consensus 251 ~e~mpf~eYl~lL~~cDl~if~~~RQ-QgiGn-I~lLl~~G~~v~L~~~np~~~~l~~~~ipVlf~~d~L~~~~v~ea~r 328 (360)
T PF07429_consen 251 TEFMPFDEYLALLSRCDLGIFNHNRQ-QGIGN-ICLLLQLGKKVFLSRDNPFWQDLKEQGIPVLFYGDELDEALVREAQR 328 (360)
T ss_pred hhhCCHHHHHHHHHhCCEEEEeechh-hhHhH-HHHHHHcCCeEEEecCChHHHHHHhCCCeEEeccccCCHHHHHHHHH
Confidence 4 4489999999999999998775 56665 5568999999999865555555544433344432 24455555544
Q ss_pred HHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 001292 564 LFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILEN 604 (1106)
Q Consensus 564 ~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLyes 604 (1106)
++..-... ...+|..+..+.+...+.-
T Consensus 329 ql~~~dk~--------------~iaFf~pny~~~w~~~l~~ 355 (360)
T PF07429_consen 329 QLANVDKQ--------------QIAFFAPNYLQGWRQALRL 355 (360)
T ss_pred HHhhCccc--------------ceeeeCCchHHHHHHHHHH
Confidence 44332211 1136667777777776654
No 136
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=96.68 E-value=0.062 Score=65.58 Aligned_cols=86 Identities=15% Similarity=-0.028 Sum_probs=63.9
Q ss_pred CCCCCcEEEcCChhhHHHHH--HHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecC----CCCchhhhccCCeEEEEcC
Q 001292 479 GLLEHSVRHYGFNGDVNGVL--LMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPD----FPIIKEYVAEGAQVIFFQK 552 (1106)
Q Consensus 479 GL~d~rV~flG~~eDL~~Ly--aaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD----~gGI~EiV~Dg~nG~LV~~ 552 (1106)
++++ +|.+.+... -..+| ..+++||.- |+..++.||+.+|+|+|+-. .......+.....|..++.
T Consensus 343 ~~p~-Nv~i~~w~P-q~~lL~hp~v~~fItH------GG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~ 414 (507)
T PHA03392 343 NLPA-NVLTQKWFP-QRAVLKHKNVKAFVTQ------GGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDT 414 (507)
T ss_pred cCCC-ceEEecCCC-HHHHhcCCCCCEEEec------CCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEecc
Confidence 4555 899998653 34566 458888843 56789999999999999864 3345555655567877765
Q ss_pred C--CHHHHHHHHHHHHhCcccH
Q 001292 553 D--NPEGLSRAFSLFISNGKLS 572 (1106)
Q Consensus 553 ~--D~eeLAeAI~~LLsDpelR 572 (1106)
. ++++|.++|.++++|+..+
T Consensus 415 ~~~t~~~l~~ai~~vl~~~~y~ 436 (507)
T PHA03392 415 VTVSAAQLVLAIVDVIENPKYR 436 (507)
T ss_pred CCcCHHHHHHHHHHHhCCHHHH
Confidence 3 6789999999999998873
No 137
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=96.60 E-value=0.13 Score=60.66 Aligned_cols=73 Identities=15% Similarity=0.204 Sum_probs=54.4
Q ss_pred hHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCch----hhhccC-CeEEEE-cC--C----CHHHHHH
Q 001292 493 DVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIK----EYVAEG-AQVIFF-QK--D----NPEGLSR 560 (1106)
Q Consensus 493 DL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~----EiV~Dg-~nG~LV-~~--~----D~eeLAe 560 (1106)
|..++...|.+.|+||.+| +.|.++.|.-.+|+|-|++|..|.. |.|.+. ..|+.+ +. . +.++|++
T Consensus 493 DYeeFVRGCHLGVFPSYYE--PWGYTPAECTVMGiPSvtTNlSGFGcfMeehi~d~~ayGIYIvDRRfks~deSv~qL~~ 570 (692)
T KOG3742|consen 493 DYEEFVRGCHLGVFPSYYE--PWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDPQAYGIYIVDRRFKSPDESVQQLAS 570 (692)
T ss_pred CHHHHhccccccccccccC--CCCCCchheEEeccccccccccchhhhHHHHhcCchhceEEEEecccCChhhHHHHHHH
Confidence 6789999999999999998 9999999999999999999998865 555443 356544 21 2 3445555
Q ss_pred HHHHHHh
Q 001292 561 AFSLFIS 567 (1106)
Q Consensus 561 AI~~LLs 567 (1106)
-+.....
T Consensus 571 ~m~~F~~ 577 (692)
T KOG3742|consen 571 FMYEFCK 577 (692)
T ss_pred HHHHHHH
Confidence 5554443
No 138
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.59 E-value=0.27 Score=56.56 Aligned_cols=241 Identities=17% Similarity=0.121 Sum_probs=130.9
Q ss_pred hhHHHHHHHHHHHHHC-CCEEEEEEcCCCC------ch-HHHHHHhHHHHHhhccCccEEEEccccHHHHHHHHHHHhhh
Q 001292 236 SRSLLLITVVKNLQKL-GYVFKIYAVRSGN------SH-SLWEQIAGQISILGQEQYSLIDWSIFDGIIADSLEAKEAIS 307 (1106)
Q Consensus 236 Gesl~vv~LakaLqe~-GyeVtV~t~~dg~------~~-~i~r~lg~lvkiIr~~~pDiIh~~~~~~i~v~~La~k~~id 307 (1106)
|...+..-|+++|... +++|..+....-. .. ..+.........+....+|+|....-.+..+....++..
T Consensus 2 Gh~~Q~~GLa~aL~~~~~~~~~~v~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~pdLiIsaGr~t~~~~~~l~r~~-- 79 (311)
T PF06258_consen 2 GHENQSLGLAEALGRLTPYEIKRVDVRRPWRWLPRLLPAPLRALLKPFSPALEPPWPDLIISAGRRTAPAALALRRAS-- 79 (311)
T ss_pred chHHHHHHHHHHhcCccCcceeEeccccchhhccccccchHHHhhhcccccccCCCCcEEEECCCchHHHHHHHHHHc--
Confidence 5566788899998884 8888777665410 00 011111111223334568888887777777766666542
Q ss_pred hcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecCCChhhhhcCC-CCCCEEEeCCCCCCc
Q 001292 308 SLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPMLYSVL-DAGNFFVIPGSPADV 386 (1106)
Q Consensus 308 II~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~~~~~~~~gi-~~~KI~VIpN~GVDl 386 (1106)
..++++|+..+=. . -....|.||++.... . ...++..+.+. .+
T Consensus 80 ------gg~~~~V~i~~P~-----~-----------------~~~~FDlvi~p~HD~------~~~~~Nvl~t~ga-~~- 123 (311)
T PF06258_consen 80 ------GGRTKTVQIMDPR-----L-----------------PPRPFDLVIVPEHDR------LPRGPNVLPTLGA-PN- 123 (311)
T ss_pred ------CCCceEEEEcCCC-----C-----------------CccccCEEEECcccC------cCCCCceEecccC-CC-
Confidence 1234666652211 0 024678888876542 2 34466665542 22
Q ss_pred ccccccCcc---hhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHH---HHHHHHHHhHHHHHhhccCCCCeEEEEEE
Q 001292 387 WAVEAYSKS---HEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYA---VAMHDVGPLLIKYARRNSVEGSFKFVFLC 460 (1106)
Q Consensus 387 ~~~e~F~ps---~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~d---lLLeA~k~Ll~k~aklk~~~PdikfLIIV 460 (1106)
.+.+. ..+..+...++-.+...+.+.||.-...+ .-+.+ .+++.+..+.+. .+ .. +.|.
T Consensus 124 ----~i~~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~--~~~~~~~~~l~~~l~~~~~~-------~~-~~-~~vt 188 (311)
T PF06258_consen 124 ----RITPERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHY--RWDEEDAERLLDQLAALAAA-------YG-GS-LLVT 188 (311)
T ss_pred ----cCCHHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCc--ccCHHHHHHHHHHHHHHHHh-------CC-Ce-EEEE
Confidence 22222 12334445555445566777777533211 22344 344444333321 12 34 3444
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcE-EEcCCh-hhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCC
Q 001292 461 GNSTDGYNDALQEVASRLGLLEHSV-RHYGFN-GDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPI 536 (1106)
Q Consensus 461 G~GperY~eeLkeLaeklGL~d~rV-~flG~~-eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gG 536 (1106)
..--.. .+....+.+.++-.. .| .+-+.- +-+..+|+.||.+|++..+. .-+-||++.|+||.+-..++
T Consensus 189 tSRRTp-~~~~~~L~~~~~~~~-~~~~~~~~~~nPy~~~La~ad~i~VT~DSv-----SMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 189 TSRRTP-PEAEAALRELLKDNP-GVYIWDGTGENPYLGFLAAADAIVVTEDSV-----SMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred cCCCCc-HHHHHHHHHhhcCCC-ceEEecCCCCCcHHHHHHhCCEEEEcCccH-----HHHHHHHHcCCCEEEecCCC
Confidence 432211 133334444333333 56 443322 34889999999999997665 56789999999999987776
No 139
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=96.52 E-value=0.025 Score=60.31 Aligned_cols=149 Identities=11% Similarity=0.008 Sum_probs=87.3
Q ss_pred EEEEEeCCC---CCChhHHHHHHHHHHHHHCCCEEEEEEcCCCC--chHHH--------------------HHHhHHHHH
Q 001292 224 RIGLILGNM---AKDSRSLLLITVVKNLQKLGYVFKIYAVRSGN--SHSLW--------------------EQIAGQISI 278 (1106)
Q Consensus 224 RIalVlg~L---~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~--~~~i~--------------------r~lg~lvki 278 (1106)
+|+++-..= ..||-+.++-.|+..|.++|++|+|+|..+.. ....+ -.+..+...
T Consensus 3 kIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y~gv~l~~i~~~~~g~~~si~yd~~sl~~a 82 (185)
T PF09314_consen 3 KIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFEYNGVRLVYIPAPKNGSAESIIYDFLSLLHA 82 (185)
T ss_pred eEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcccCCeEEEEeCCCCCCchHHHHHHHHHHHHH
Confidence 455553331 23899999999999999999999999985422 11111 111112222
Q ss_pred h---hc--cCccEEEEcccc-HHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCccc--ccchhhhhhhHHhHHHHHHHH
Q 001292 279 L---GQ--EQYSLIDWSIFD-GIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLA--NRLPVYVERGFQNLLSYWKSV 350 (1106)
Q Consensus 279 I---r~--~~pDiIh~~~~~-~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls--~r~~~Y~~~gleklis~~~~~ 350 (1106)
+ +. .+.++++.+.+. +.++..+.++.. ..++|+++++|+-... +|... ...+-++.+ ..+
T Consensus 83 l~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~~~--------~~g~~v~vN~DGlEWkR~KW~~~--~k~~lk~~E--~~a 150 (185)
T PF09314_consen 83 LRFIKQDKIKYDIILILGYGIGPFFLPFLRKLR--------KKGGKVVVNMDGLEWKRAKWGRP--AKKYLKFSE--KLA 150 (185)
T ss_pred HHHHhhccccCCEEEEEcCCccHHHHHHHHhhh--------hcCCcEEECCCcchhhhhhcCHH--HHHHHHHHH--HHH
Confidence 2 22 256789988877 555554544322 2577999998884322 22211 101111111 134
Q ss_pred hccccEEEecCCChhhhh-cCCCCCCEEEeCCCCCC
Q 001292 351 FSRVNVIVFPDYTLPMLY-SVLDAGNFFVIPGSPAD 385 (1106)
Q Consensus 351 l~~AD~VIa~S~~~~~~~-~gi~~~KI~VIpN~GVD 385 (1106)
.+.+|.+|+.|....+.. ......+..+|++ |.|
T Consensus 151 vk~ad~lIaDs~~I~~y~~~~y~~~~s~~IaY-Gad 185 (185)
T PF09314_consen 151 VKYADRLIADSKGIQDYIKERYGRKKSTFIAY-GAD 185 (185)
T ss_pred HHhCCEEEEcCHHHHHHHHHHcCCCCcEEecC-CCC
Confidence 678999999998877762 2333356788886 544
No 140
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.44 E-value=0.1 Score=60.67 Aligned_cols=117 Identities=11% Similarity=0.184 Sum_probs=88.9
Q ss_pred cEEEcC---ChhhHHHHHHHcCeEEEccC--CCCCCC--cHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHH
Q 001292 484 SVRHYG---FNGDVNGVLLMADIVLYGSS--QVEQGF--PSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPE 556 (1106)
Q Consensus 484 rV~flG---~~eDL~~LyaaADVfV~PS~--~EeEGF--GlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~e 556 (1106)
++..+| ....+..++..-|+++.-++ .+..++ .+-+.|+|+||.|.|+....++...+.+|+.-++. .|..
T Consensus 238 ~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc~~~liT~~~~~~e~~f~pgk~~iv~--~d~k 315 (373)
T COG4641 238 NVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGCGGFLITDYWKDLEKFFKPGKDIIVY--QDSK 315 (373)
T ss_pred hhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhHHHHhhcCCccccccHHHHHHhcCCchheEEe--cCHH
Confidence 455555 33678889999999885432 221123 78899999999999999999999999888775554 6899
Q ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcH-HHHHHHHHHHHHHH
Q 001292 557 GLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLA-LDCVTRYARILENV 605 (1106)
Q Consensus 557 eLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fs-ee~v~~Y~eLyesl 605 (1106)
++.+.+..++..++. ++++++.|++.+...+. .+-+..+...+.++
T Consensus 316 dl~~~~~yll~h~~e---rkeiae~~ye~V~~~ht~~~r~~~~~~~i~sI 362 (373)
T COG4641 316 DLKEKLKYLLNHPDE---RKEIAECAYERVLARHTYEERIFKLLNEIASI 362 (373)
T ss_pred HHHHHHHHHhcCcch---HHHHHHhhHHHHHHhccHHHHHHHHHHHHHHH
Confidence 999999999999987 68999999999888766 33344555555543
No 141
>PLN02562 UDP-glycosyltransferase
Probab=95.78 E-value=0.16 Score=61.14 Aligned_cols=94 Identities=6% Similarity=-0.022 Sum_probs=63.7
Q ss_pred cEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec----CCCCchhhhccC-CeEEEEcCCCHHHH
Q 001292 484 SVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP----DFPIIKEYVAEG-AQVIFFQKDNPEGL 558 (1106)
Q Consensus 484 rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS----D~gGI~EiV~Dg-~nG~LV~~~D~eeL 558 (1106)
++.+.+.. .-..+|+..++..+-+. ++-++++||+.+|+|+|+- |.......+.+. ..|+-+...+.+++
T Consensus 329 ~~~v~~w~-PQ~~iL~h~~v~~fvtH----~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~l 403 (448)
T PLN02562 329 QGKVVSWA-PQLEVLKHQAVGCYLTH----CGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRISGFGQKEV 403 (448)
T ss_pred CEEEEecC-CHHHHhCCCccceEEec----CcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeCCCCHHHH
Confidence 67777744 33456766665333332 5568999999999999986 455566666542 45665544578999
Q ss_pred HHHHHHHHhCcccHHHHHHHHHHH
Q 001292 559 SRAFSLFISNGKLSKFARTVASAG 582 (1106)
Q Consensus 559 AeAI~~LLsDpelRk~r~~mGe~A 582 (1106)
+++|.+++.+++.++.++++++.+
T Consensus 404 ~~~v~~~l~~~~~r~~a~~l~~~~ 427 (448)
T PLN02562 404 EEGLRKVMEDSGMGERLMKLRERA 427 (448)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999887755455554443
No 142
>PLN03004 UDP-glycosyltransferase
Probab=95.76 E-value=0.1 Score=62.86 Aligned_cols=98 Identities=10% Similarity=0.066 Sum_probs=67.8
Q ss_pred cEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec----CCCCchhhhcc-CCeEEEEcC-----C
Q 001292 484 SVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP----DFPIIKEYVAE-GAQVIFFQK-----D 553 (1106)
Q Consensus 484 rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS----D~gGI~EiV~D-g~nG~LV~~-----~ 553 (1106)
++++.+.... ..+|+.+++..+-+. +.-++++||+++|+|+|+- |.......+.+ -..|+.++. -
T Consensus 335 g~~v~~W~PQ-~~iL~H~~v~~FvTH----~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~ 409 (451)
T PLN03004 335 GMVVKSWAPQ-VPVLNHKAVGGFVTH----CGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGFV 409 (451)
T ss_pred cEEEEeeCCH-HHHhCCCccceEecc----CcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCcc
Confidence 5777674422 337888888443332 5568999999999999986 45556666643 357776642 3
Q ss_pred CHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Q 001292 554 NPEGLSRAFSLFISNGKLSKFARTVASAGRLHA 586 (1106)
Q Consensus 554 D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~a 586 (1106)
+.++++++|.++++++..+..+.++.+.+++-+
T Consensus 410 ~~e~l~~av~~vm~~~~~r~~a~~~~~~a~~Av 442 (451)
T PLN03004 410 SSTEVEKRVQEIIGECPVRERTMAMKNAAELAL 442 (451)
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Confidence 789999999999998877655555555555443
No 143
>PLN03007 UDP-glucosyltransferase family protein
Probab=95.55 E-value=0.43 Score=57.93 Aligned_cols=114 Identities=11% Similarity=0.047 Sum_probs=69.5
Q ss_pred cEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec----CCCCchhhhcc-CCeEEEE--------
Q 001292 484 SVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP----DFPIIKEYVAE-GAQVIFF-------- 550 (1106)
Q Consensus 484 rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS----D~gGI~EiV~D-g~nG~LV-------- 550 (1106)
+|++.+.... ..+|+.+++-.+-+. +.-++++||+++|+|+|+- |.......+.+ -+.|+-+
T Consensus 346 g~~v~~w~PQ-~~iL~h~~v~~fvtH----~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~ 420 (482)
T PLN03007 346 GLIIRGWAPQ-VLILDHQATGGFVTH----CGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKV 420 (482)
T ss_pred CEEEecCCCH-HHHhccCccceeeec----CcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEecccccccc
Confidence 6777775533 467788877333322 5568999999999999986 33334443321 1233332
Q ss_pred --cCCCHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHH
Q 001292 551 --QKDNPEGLSRAFSLFISNG---KLSKFARTVASAGRLHAKNM-LALDCVTRYARIL 602 (1106)
Q Consensus 551 --~~~D~eeLAeAI~~LLsDp---elRk~r~~mGe~Are~ake~-fsee~v~~Y~eLy 602 (1106)
..-+.++++++|.+++.++ +.|+.++++.+.+++-+.+- ++...++.+.+.+
T Consensus 421 ~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~l~~~v~~~ 478 (482)
T PLN03007 421 KGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGSSFNDLNKFMEEL 478 (482)
T ss_pred ccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 1237889999999999987 55555566666665555442 2344444444433
No 144
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.53 E-value=0.18 Score=61.38 Aligned_cols=193 Identities=11% Similarity=0.086 Sum_probs=114.6
Q ss_pred HHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCC
Q 001292 401 LRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGL 480 (1106)
Q Consensus 401 LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL 480 (1106)
.|.++++++|.+++..+-.+. |=-...++.+..++... |+-. |++.--.... ...++..++++|+
T Consensus 749 ~r~~y~Lp~d~vvf~~FNqLy------KidP~~l~~W~~ILk~V-------PnS~-LwllrfPa~g-e~rf~ty~~~~Gl 813 (966)
T KOG4626|consen 749 TRSQYGLPEDAVVFCNFNQLY------KIDPSTLQMWANILKRV-------PNSV-LWLLRFPAVG-EQRFRTYAEQLGL 813 (966)
T ss_pred CCCCCCCCCCeEEEeechhhh------cCCHHHHHHHHHHHHhC-------Ccce-eEEEeccccc-hHHHHHHHHHhCC
Confidence 577899998887777665433 23356777887777544 6654 3333221110 1678999999999
Q ss_pred CCCcEEEcC--ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCch-----hhhccCCeEEEEcCC
Q 001292 481 LEHSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIK-----EYVAEGAQVIFFQKD 553 (1106)
Q Consensus 481 ~d~rV~flG--~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~-----EiV~Dg~nG~LV~~~ 553 (1106)
+..+|+|.. ..+|-..-+..+||++=+.... +-.+-.|.+-+|+|+|+-...... ..+..-..|-++- .
T Consensus 814 ~p~riifs~va~k~eHvrr~~LaDv~LDTplcn---GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hlia-k 889 (966)
T KOG4626|consen 814 EPDRIIFSPVAAKEEHVRRGQLADVCLDTPLCN---GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIA-K 889 (966)
T ss_pred CccceeeccccchHHHHHhhhhhhhcccCcCcC---CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHh-h
Confidence 888999998 3366677788999988654443 223457888999999975332211 1221112333332 5
Q ss_pred CHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH--HHHhcH-HHHHHHHHHHHHHHhcCCCCCCCC
Q 001292 554 NPEGLSRAFSLFISNGKLSKFARTVASAGRLH--AKNMLA-LDCVTRYARILENVLNFPSDALLP 615 (1106)
Q Consensus 554 D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~--ake~fs-ee~v~~Y~eLyeslLk~Ps~a~~P 615 (1106)
+.+++.+.-.+|-.|.+. .+++...-+.. ....|. ...+..++++|-++-+.-.....|
T Consensus 890 ~~eEY~~iaV~Latd~~~---L~~lr~~l~~~r~~splfd~~q~~~~LE~~y~~MW~~y~~G~~p 951 (966)
T KOG4626|consen 890 NREEYVQIAVRLATDKEY---LKKLRAKLRKARASSPLFDTKQYAKGLERLYLQMWKKYCSGEVP 951 (966)
T ss_pred hHHHHHHHHHHhhcCHHH---HHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHHHHHhccCCCC
Confidence 788898888888888765 33332222211 111222 233346666666665543333333
No 145
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=95.26 E-value=0.11 Score=62.44 Aligned_cols=83 Identities=19% Similarity=0.226 Sum_probs=55.5
Q ss_pred cEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCC----CCchhhhccCCeEEEEcCC--CHHH
Q 001292 484 SVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDF----PIIKEYVAEGAQVIFFQKD--NPEG 557 (1106)
Q Consensus 484 rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~----gGI~EiV~Dg~nG~LV~~~--D~ee 557 (1106)
+|.+...... .++|+...+-++=+. |+-++++||+.+|+|+|+-.. ......+.+...|...+.. +.++
T Consensus 324 n~~~~~W~PQ-~~lL~hp~v~~fitH----gG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~ 398 (500)
T PF00201_consen 324 NVLIVKWLPQ-NDLLAHPRVKLFITH----GGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLTEEE 398 (500)
T ss_dssp TEEEESS--H-HHHHTSTTEEEEEES------HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-SHHH
T ss_pred eEEEeccccc-hhhhhcccceeeeec----cccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecCCcHHH
Confidence 7888886543 366765555333332 677999999999999999643 3455666666678877654 5788
Q ss_pred HHHHHHHHHhCccc
Q 001292 558 LSRAFSLFISNGKL 571 (1106)
Q Consensus 558 LAeAI~~LLsDpel 571 (1106)
+.++|.++++|+..
T Consensus 399 l~~ai~~vl~~~~y 412 (500)
T PF00201_consen 399 LRAAIREVLENPSY 412 (500)
T ss_dssp HHHHHHHHHHSHHH
T ss_pred HHHHHHHHHhhhHH
Confidence 99999999999876
No 146
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=95.06 E-value=0.87 Score=55.40 Aligned_cols=113 Identities=12% Similarity=0.095 Sum_probs=70.7
Q ss_pred cEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHhCCCEEec----CCCCchhhhcc-CCeEEEEc-----
Q 001292 484 SVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP----DFPIIKEYVAE-GAQVIFFQ----- 551 (1106)
Q Consensus 484 rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS----D~gGI~EiV~D-g~nG~LV~----- 551 (1106)
++++.+.... ..+|+. +++||.- ++-++++||+++|+|+|+- |...+...+.+ -+.|+-+.
T Consensus 344 g~~v~~w~PQ-~~vL~h~~v~~fvtH------~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~ 416 (477)
T PLN02863 344 GLVIRGWAPQ-VAILSHRAVGAFLTH------CGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADT 416 (477)
T ss_pred CEEecCCCCH-HHHhcCCCcCeEEec------CCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCCC
Confidence 5777775533 456665 4555532 5568999999999999986 44555555443 25776552
Q ss_pred CCCHHHHHHHHHHHH-hCcccHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHH
Q 001292 552 KDNPEGLSRAFSLFI-SNGKLSKFARTVASAGRLHAKNM-LALDCVTRYARILE 603 (1106)
Q Consensus 552 ~~D~eeLAeAI~~LL-sDpelRk~r~~mGe~Are~ake~-fsee~v~~Y~eLye 603 (1106)
.-+.++++++|.+++ ++++.++.++++++.+++-+.+- .+.+.++.+.+.+.
T Consensus 417 ~~~~~~v~~~v~~~m~~~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~ 470 (477)
T PLN02863 417 VPDSDELARVFMESVSENQVERERAKELRRAALDAIKERGSSVKDLDGFVKHVV 470 (477)
T ss_pred CcCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 236789999999988 55665555566666555554433 33444444444443
No 147
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=94.79 E-value=9.2 Score=43.26 Aligned_cols=250 Identities=17% Similarity=0.161 Sum_probs=129.5
Q ss_pred CChhHHHHHHHHHHHHHCCCEEEEEEcCC-CC----------chHHHHHHhHHHHHhhccCccEEEEccccHHHHHHHHH
Q 001292 234 KDSRSLLLITVVKNLQKLGYVFKIYAVRS-GN----------SHSLWEQIAGQISILGQEQYSLIDWSIFDGIIADSLEA 302 (1106)
Q Consensus 234 ~gGesl~vv~LakaLqe~GyeVtV~t~~d-g~----------~~~i~r~lg~lvkiIr~~~pDiIh~~~~~~i~v~~La~ 302 (1106)
..|.+-+++.|++.|..-.|.+.++.... ++ ..-..+.++.......+..||.+..-......+....+
T Consensus 10 RtGnt~QaiaLa~~l~r~eyttk~l~~~~l~~lP~~wl~~yp~~~~~~l~~~~~~r~p~~~Pdl~I~aGrrta~l~~~lk 89 (329)
T COG3660 10 RTGNTHQAIALAEQLTRSEYTTKLLEYNNLAKLPNFWLAYYPIHILRELFGPRLSRKPEQRPDLIITAGRRTAPLAFYLK 89 (329)
T ss_pred CCccHHHHHHHHHHhhccceEEEEeeccccccCchhhhhcCccHhHHHhhcCccccCccCCCceEEecccchhHHHHHHH
Confidence 45778889999999988667666665541 01 11112233333444444567777666666655555554
Q ss_pred HHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecCCChhhhhcCCCCCCEEEeCCC
Q 001292 303 KEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPMLYSVLDAGNFFVIPGS 382 (1106)
Q Consensus 303 k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~~~~~~~~gi~~~KI~VIpN~ 382 (1106)
+.. .+ +.++.+..-+ +. .+..|.||.+....... ......++.-|.+.
T Consensus 90 k~~---------~~-~~vVqI~~Pr----lp-----------------~~~fDlvivp~HD~~~~-~s~~~~Nilpi~Gs 137 (329)
T COG3660 90 KKF---------GG-IKVVQIQDPR----LP-----------------YNHFDLVIVPYHDWREE-LSDQGPNILPINGS 137 (329)
T ss_pred Hhc---------CC-ceEEEeeCCC----CC-----------------cccceEEeccchhhhhh-hhccCCceeeccCC
Confidence 431 34 4444444321 11 13456666654333222 22234456555543
Q ss_pred CCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcC
Q 001292 383 PADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGN 462 (1106)
Q Consensus 383 GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~ 462 (1106)
+-.+ .+.+. ....+.. +.++..+..+|-++||.-.+ .-.-..+.+.+....+.+.+. + ....||+-..+
T Consensus 138 ~h~V--t~~~l-Aa~~e~~-~~~~p~~rq~vAVlVGg~nk--~f~~~~d~a~q~~~~l~k~l~---~--~g~~~lisfSR 206 (329)
T COG3660 138 PHNV--TSQRL-AALREAF-KHLLPLPRQRVAVLVGGNNK--AFVFQEDKAHQFASLLVKILE---N--QGGSFLISFSR 206 (329)
T ss_pred CCcc--cHHHh-hhhHHHH-HhhCCCCCceEEEEecCCCC--CCccCHHHHHHHHHHHHHHHH---h--CCceEEEEeec
Confidence 2222 01111 1122333 33434456678888885332 111223444444433332221 1 22344454444
Q ss_pred CCCccHHHHHHHHHH-cCCCCCcEEEcCCh---hhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCC
Q 001292 463 STDGYNDALQEVASR-LGLLEHSVRHYGFN---GDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP 535 (1106)
Q Consensus 463 GperY~eeLkeLaek-lGL~d~rV~flG~~---eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~g 535 (1106)
-. .+.++.+.+. +.-.. .+.+-+.. .-...+|+.||.++.+..+. .-+-||+|.|+||-+--.+
T Consensus 207 RT---p~~~~s~l~~~l~s~~-~i~w~~~d~g~NPY~~~La~Adyii~TaDSi-----nM~sEAasTgkPv~~~~~~ 274 (329)
T COG3660 207 RT---PDTVKSILKNNLNSSP-GIVWNNEDTGYNPYIDMLAAADYIISTADSI-----NMCSEAASTGKPVFILEPP 274 (329)
T ss_pred CC---cHHHHHHHHhccccCc-eeEeCCCCCCCCchHHHHhhcceEEEecchh-----hhhHHHhccCCCeEEEecC
Confidence 33 2667777765 33332 45555531 24779999999999886554 5678999999999886433
No 148
>PLN02448 UDP-glycosyltransferase family protein
Probab=94.78 E-value=0.84 Score=55.11 Aligned_cols=81 Identities=15% Similarity=0.064 Sum_probs=55.4
Q ss_pred cEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec----CCCCchhhhccC-CeEEEEc-------
Q 001292 484 SVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP----DFPIIKEYVAEG-AQVIFFQ------- 551 (1106)
Q Consensus 484 rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS----D~gGI~EiV~Dg-~nG~LV~------- 551 (1106)
++.+.+.. .-..+|+..++..+-+. +.-++++||+++|+|+|+- |...+...+.+. ..|+-+.
T Consensus 324 ~~~v~~w~-pQ~~iL~h~~v~~fvtH----gG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~ 398 (459)
T PLN02448 324 MGLVVPWC-DQLKVLCHSSVGGFWTH----CGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEET 398 (459)
T ss_pred CEEEeccC-CHHHHhccCccceEEec----CchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccCC
Confidence 56666744 33446667777333222 6678999999999999986 444556666542 4566553
Q ss_pred CCCHHHHHHHHHHHHhCc
Q 001292 552 KDNPEGLSRAFSLFISNG 569 (1106)
Q Consensus 552 ~~D~eeLAeAI~~LLsDp 569 (1106)
.-+.+++++++.+++.++
T Consensus 399 ~~~~~~l~~av~~vl~~~ 416 (459)
T PLN02448 399 LVGREEIAELVKRFMDLE 416 (459)
T ss_pred cCcHHHHHHHHHHHhcCC
Confidence 237899999999999875
No 149
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=94.73 E-value=0.14 Score=56.73 Aligned_cols=139 Identities=15% Similarity=0.191 Sum_probs=78.4
Q ss_pred EEEEEeCCCCC----ChhHHHHHHHHHHHHHCCCEEEEEEcCCCCch---------------------------------
Q 001292 224 RIGLILGNMAK----DSRSLLLITVVKNLQKLGYVFKIYAVRSGNSH--------------------------------- 266 (1106)
Q Consensus 224 RIalVlg~L~~----gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~--------------------------------- 266 (1106)
||++|..++.+ ||-..++..|.++|+++|++|.|+.+..+...
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~~~ 80 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKYGFIDEEYFQLEPVRRLSVPFGGPVPVGVWYEVRVYRY 80 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-THHHHHHCTTEEEEEEES-STTCEEEEE----EEEEEE
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccchhhhhhhhcceEEEEeccccccccccccceEEEEEEE
Confidence 68888877765 99999999999999999999999986321100
Q ss_pred -------------HHH------------------H---HHhHHHHHhhc--cCccEEEEccccHHHHHHHHHHHhhhhcc
Q 001292 267 -------------SLW------------------E---QIAGQISILGQ--EQYSLIDWSIFDGIIADSLEAKEAISSLM 310 (1106)
Q Consensus 267 -------------~i~------------------r---~lg~lvkiIr~--~~pDiIh~~~~~~i~v~~La~k~~idII~ 310 (1106)
... + ...+....++. .+||+||+|.+.+.++..+.+... .
T Consensus 81 ~~~~v~v~~i~~~~~f~r~~iY~~~~~~~~d~~~rf~~fs~a~le~~~~l~~~pDIIH~hDW~tal~p~~lk~~~----~ 156 (245)
T PF08323_consen 81 PVDGVPVYFIDNPEYFDRPGIYGDNGGDYPDNAERFAFFSRAALELLKKLGWKPDIIHCHDWHTALAPLYLKERY----Q 156 (245)
T ss_dssp EETTEEEEEEESHHHHGSSSSSBSTSSBHTTHHHHHHHHHHHHHHHHCTCT-S-SEEEEECGGGTTHHHHHHHCC----S
T ss_pred EcCCccEEEecChhhccccceeccCCCcchhHHHHHHHHHHHHHHHHHhhCCCCCEEEecCchHHHHHHHhcccc----c
Confidence 000 0 00113444444 589999999999999877766421 1
Q ss_pred cCC-CCCCcEEEEEcCCcccccchh--hhhhhH-------------HhHHHHHHHHhccccEEEecCCChhh
Q 001292 311 QEP-FHSIPLVWIIQEDSLANRLPV--YVERGF-------------QNLLSYWKSVFSRVNVIVFPDYTLPM 366 (1106)
Q Consensus 311 te~-~~gIPVI~tIHna~Ls~r~~~--Y~~~gl-------------eklis~~~~~l~~AD~VIa~S~~~~~ 366 (1106)
..+ +.++|+|+|+||......... ....++ ...+...+..+..||.|+++|...+.
T Consensus 157 ~~~~~~~~~~v~TIHN~~yqg~~~~~~~~~~gl~~~~~~~~~~~~~~~~in~lk~gi~~AD~v~TVS~~Ya~ 228 (245)
T PF08323_consen 157 QDPFFANIPTVFTIHNLEYQGIFPPEDLKALGLPDEYFQNLDEYEFYGQINFLKAGIVYADKVTTVSPTYAR 228 (245)
T ss_dssp S------SEEEEEESSTT---EEEGGGGGCTT-GGGGS-STTTTEETTEEEHHHHHHHHSSEEEESSHHHHH
T ss_pred cccccccceeEEEEcccccCCcCCHHHHHHcCCCHHHhccccccccccccCHHHHHHHhcCEeeeCCHHHHH
Confidence 111 347999999999322111100 000000 01112234557789999998866543
No 150
>PLN02167 UDP-glycosyltransferase family protein
Probab=94.63 E-value=0.54 Score=57.05 Aligned_cols=99 Identities=13% Similarity=0.071 Sum_probs=63.2
Q ss_pred cEEEcCChhhHHHHHHHcC--eEEEccCCCCCCCcHHHHHHHHhCCCEEec----CCCCchhh-hccCCeEEEEcC----
Q 001292 484 SVRHYGFNGDVNGVLLMAD--IVLYGSSQVEQGFPSLIVRAMTFGIPVITP----DFPIIKEY-VAEGAQVIFFQK---- 552 (1106)
Q Consensus 484 rV~flG~~eDL~~LyaaAD--VfV~PS~~EeEGFGlvLLEAMA~G~PVIAS----D~gGI~Ei-V~Dg~nG~LV~~---- 552 (1106)
++.+.+.. .-..+|+... .||.- ++-++++||+++|+|+|+- |....... +..-+.|+.+..
T Consensus 341 rg~v~~w~-PQ~~iL~h~~vg~fvtH------~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~ 413 (475)
T PLN02167 341 RGLVCGWA-PQVEILAHKAIGGFVSH------CGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVS 413 (475)
T ss_pred CeeeeccC-CHHHHhcCcccCeEEee------CCcccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeeccccc
Confidence 44555644 2334666644 45532 4457999999999999986 34444433 434356765532
Q ss_pred -----CCHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHHHHh
Q 001292 553 -----DNPEGLSRAFSLFISNG-KLSKFARTVASAGRLHAKNM 589 (1106)
Q Consensus 553 -----~D~eeLAeAI~~LLsDp-elRk~r~~mGe~Are~ake~ 589 (1106)
-+.++++++|.+++.++ +.++.++++++.+++-+.+-
T Consensus 414 ~~~~~~~~~~l~~av~~~m~~~~~~r~~a~~~~~~~~~av~~g 456 (475)
T PLN02167 414 AYGEIVKADEIAGAVRSLMDGEDVPRKKVKEIAEAARKAVMDG 456 (475)
T ss_pred ccCCcccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 36889999999999765 44555666666666665544
No 151
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=94.44 E-value=1 Score=54.33 Aligned_cols=80 Identities=13% Similarity=0.061 Sum_probs=54.7
Q ss_pred cEEEcCChhhHHHHHHHcCe--EEEccCCCCCCCcHHHHHHHHhCCCEEec----CCCCchhhhccC-CeEEEE-cCCCH
Q 001292 484 SVRHYGFNGDVNGVLLMADI--VLYGSSQVEQGFPSLIVRAMTFGIPVITP----DFPIIKEYVAEG-AQVIFF-QKDNP 555 (1106)
Q Consensus 484 rV~flG~~eDL~~LyaaADV--fV~PS~~EeEGFGlvLLEAMA~G~PVIAS----D~gGI~EiV~Dg-~nG~LV-~~~D~ 555 (1106)
++.+.+.... ..+|+..++ ||.- ++-++++||+++|+|+|+- |.......+.+. +.|+-+ ..-+.
T Consensus 325 ~g~v~~w~PQ-~~iL~h~~v~~fvtH------~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~ 397 (451)
T PLN02410 325 RGYIVKWAPQ-KEVLSHPAVGGFWSH------CGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEGDLDR 397 (451)
T ss_pred CeEEEccCCH-HHHhCCCccCeeeec------CchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCCcccH
Confidence 5666674422 236666555 5532 5568999999999999986 444555665543 577655 23478
Q ss_pred HHHHHHHHHHHhCcc
Q 001292 556 EGLSRAFSLFISNGK 570 (1106)
Q Consensus 556 eeLAeAI~~LLsDpe 570 (1106)
++++++|.+++.+++
T Consensus 398 ~~v~~av~~lm~~~~ 412 (451)
T PLN02410 398 GAVERAVKRLMVEEE 412 (451)
T ss_pred HHHHHHHHHHHcCCc
Confidence 899999999998864
No 152
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=94.40 E-value=6.9 Score=43.54 Aligned_cols=99 Identities=23% Similarity=0.279 Sum_probs=57.7
Q ss_pred EEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcC--
Q 001292 412 IVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYG-- 489 (1106)
Q Consensus 412 ~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG-- 489 (1106)
.+++..|+....+ ....+...+.++.|.+ .++++ +++|...+. +..+++.+..+... .+.+.|
T Consensus 123 ~i~i~~~~~~~~k--~w~~~~~~~l~~~l~~---------~~~~i-vl~g~~~e~--~~~~~i~~~~~~~~-~~~~~~~~ 187 (279)
T cd03789 123 VVVLPPGASGPAK--RWPAERFAALADRLLA---------RGARV-VLTGGPAER--ELAEEIAAALGGPR-VVNLAGKT 187 (279)
T ss_pred EEEECCCCCCccc--cCCHHHHHHHHHHHHH---------CCCEE-EEEechhhH--HHHHHHHHhcCCCc-cccCcCCC
Confidence 3444555433211 3344555555554442 14453 555655443 56666666543222 455666
Q ss_pred ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec
Q 001292 490 FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP 532 (1106)
Q Consensus 490 ~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS 532 (1106)
...++..+++.||++|-+.+ ..+--|.|+|+|+|+-
T Consensus 188 ~l~e~~~li~~~~l~I~~Ds-------g~~HlA~a~~~p~i~l 223 (279)
T cd03789 188 SLRELAALLARADLVVTNDS-------GPMHLAAALGTPTVAL 223 (279)
T ss_pred CHHHHHHHHHhCCEEEeeCC-------HHHHHHHHcCCCEEEE
Confidence 45899999999999996632 2334457999999985
No 153
>PLN02210 UDP-glucosyl transferase
Probab=94.34 E-value=1.2 Score=54.01 Aligned_cols=100 Identities=13% Similarity=0.123 Sum_probs=65.1
Q ss_pred cEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec----CCCCchhhhcc-CCeEEEEcC------
Q 001292 484 SVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP----DFPIIKEYVAE-GAQVIFFQK------ 552 (1106)
Q Consensus 484 rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS----D~gGI~EiV~D-g~nG~LV~~------ 552 (1106)
+..+.+.... ..+|+.+.+..+-+. +.=++++||+++|+|+|+- |...+...+.+ -+.|+.+..
T Consensus 325 ~g~v~~w~PQ-~~iL~h~~vg~FitH----~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~ 399 (456)
T PLN02210 325 QGVVLEWSPQ-EKILSHMAISCFVTH----CGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGE 399 (456)
T ss_pred CeEEEecCCH-HHHhcCcCcCeEEee----CCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCc
Confidence 3445564433 347777874333322 4457899999999999986 44445556654 357776632
Q ss_pred CCHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHHHHH
Q 001292 553 DNPEGLSRAFSLFISNGK---LSKFARTVASAGRLHAKN 588 (1106)
Q Consensus 553 ~D~eeLAeAI~~LLsDpe---lRk~r~~mGe~Are~ake 588 (1106)
-+.++++++|.+++.+++ .|..++++.+.+++-+.+
T Consensus 400 ~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~ 438 (456)
T PLN02210 400 LKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAP 438 (456)
T ss_pred CCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcC
Confidence 378899999999998765 444555566666655544
No 154
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=94.24 E-value=13 Score=42.83 Aligned_cols=111 Identities=14% Similarity=0.157 Sum_probs=61.4
Q ss_pred HHHHcCCC-CCcEEEEEEcccC-ccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHc
Q 001292 401 LRKENGFL-KDEIVVVVVGSSF-FYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRL 478 (1106)
Q Consensus 401 LR~~lGL~-~d~~VIL~VGRl~-~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaekl 478 (1106)
+...+++. ++..+++..|... +++ ..-.+...+..+.|.+ .+++ +++.|...++ +..+++++..
T Consensus 170 ~~~~~~~~~~~~~i~i~pga~~~~~K--~Wp~e~~a~l~~~l~~---------~~~~-vvl~Gg~~e~--~~~~~i~~~~ 235 (348)
T PRK10916 170 TCAAFSLSSERPIIGFCPGAEFGPAK--RWPHYHYAELAQQLID---------EGYQ-VVLFGSAKDH--EAGNEILAAL 235 (348)
T ss_pred HHHHcCCCCCCCEEEEeCCCCCcccc--CCCHHHHHHHHHHHHH---------CCCe-EEEEeCHHhH--HHHHHHHHhc
Confidence 44455553 3455666666532 322 2233344444433321 2345 3555654443 5555655543
Q ss_pred CCC--CCcEEEcC--ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec
Q 001292 479 GLL--EHSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP 532 (1106)
Q Consensus 479 GL~--d~rV~flG--~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS 532 (1106)
+-. ...+.+.| +..++..+++.||++|-.- + ..+-=|.|+|+|+|+-
T Consensus 236 ~~~~~~~~~~l~g~~sL~el~ali~~a~l~I~nD-----T--Gp~HlAaA~g~P~val 286 (348)
T PRK10916 236 NTEQQAWCRNLAGETQLEQAVILIAACKAIVTND-----S--GLMHVAAALNRPLVAL 286 (348)
T ss_pred ccccccceeeccCCCCHHHHHHHHHhCCEEEecC-----C--hHHHHHHHhCCCEEEE
Confidence 321 10245667 4589999999999999553 2 3344588999999974
No 155
>PLN02173 UDP-glucosyl transferase family protein
Probab=94.11 E-value=0.71 Score=55.77 Aligned_cols=82 Identities=12% Similarity=0.141 Sum_probs=57.9
Q ss_pred cEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec----CCCCchhhhccC-CeEEEEcC------
Q 001292 484 SVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP----DFPIIKEYVAEG-AQVIFFQK------ 552 (1106)
Q Consensus 484 rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS----D~gGI~EiV~Dg-~nG~LV~~------ 552 (1106)
++.+.+... -..+|+...+..+-+. +..++++||+++|+|+|+- |.......+.+. ..|+-+..
T Consensus 318 ~~~i~~W~P-Q~~iL~H~~v~~FvtH----cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~ 392 (449)
T PLN02173 318 KSLVLKWSP-QLQVLSNKAIGCFMTH----CGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGI 392 (449)
T ss_pred ceEEeCCCC-HHHHhCCCccceEEec----CccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCCc
Confidence 677778543 3347777775554443 6679999999999999986 444556666553 46665532
Q ss_pred CCHHHHHHHHHHHHhCcc
Q 001292 553 DNPEGLSRAFSLFISNGK 570 (1106)
Q Consensus 553 ~D~eeLAeAI~~LLsDpe 570 (1106)
-+.+++++++.+++.+++
T Consensus 393 ~~~e~v~~av~~vm~~~~ 410 (449)
T PLN02173 393 AKREEIEFSIKEVMEGEK 410 (449)
T ss_pred ccHHHHHHHHHHHhcCCh
Confidence 167999999999998754
No 156
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=94.07 E-value=5.5 Score=44.88 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecC
Q 001292 469 DALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPD 533 (1106)
Q Consensus 469 eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD 533 (1106)
+..+++.+++.-.. .|.......++..+++.||++| ++++ |.++=|+++|+|+|+-.
T Consensus 220 ~~~~~l~~~~~~~~-~i~~~~~~~e~~~~i~~~~~vI-~~Rl------H~~I~A~~~gvP~i~i~ 276 (298)
T TIGR03609 220 PLARALRDQLLGPA-EVLSPLDPEELLGLFASARLVI-GMRL------HALILAAAAGVPFVALS 276 (298)
T ss_pred HHHHHHHHhcCCCc-EEEecCCHHHHHHHHhhCCEEE-Eech------HHHHHHHHcCCCEEEee
Confidence 45556666554333 4543335678899999999866 4455 78999999999999763
No 157
>PLN02670 transferase, transferring glycosyl groups
Probab=93.68 E-value=0.25 Score=59.85 Aligned_cols=111 Identities=11% Similarity=0.090 Sum_probs=69.2
Q ss_pred EEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec----CCCCchhhhccCCeEEEEcC------CC
Q 001292 485 VRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP----DFPIIKEYVAEGAQVIFFQK------DN 554 (1106)
Q Consensus 485 V~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS----D~gGI~EiV~Dg~nG~LV~~------~D 554 (1106)
+++.+... -.++|+...+..+-+. ++-++++||+++|+|+|+- |.......+..-..|+.+.. -+
T Consensus 341 ~vv~~W~P-Q~~IL~H~~v~~FvtH----cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~ 415 (472)
T PLN02670 341 MIHVGWVP-QVKILSHESVGGFLTH----CGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSFT 415 (472)
T ss_pred eEEeCcCC-HHHHhcCcccceeeec----CCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcCc
Confidence 55556442 2336666666333332 5668999999999999996 44445566655567876643 25
Q ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 001292 555 PEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILEN 604 (1106)
Q Consensus 555 ~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLyes 604 (1106)
.++++++|.+++.+++ ..++.+++++..+..-......++.+.+.+
T Consensus 416 ~e~i~~av~~vm~~~~----g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~ 461 (472)
T PLN02670 416 SDSVAESVRLAMVDDA----GEEIRDKAKEMRNLFGDMDRNNRYVDELVH 461 (472)
T ss_pred HHHHHHHHHHHhcCcc----hHHHHHHHHHHHHHHhCcchhHHHHHHHHH
Confidence 8999999999998864 234455555555444433333344444433
No 158
>PLN02554 UDP-glycosyltransferase family protein
Probab=92.83 E-value=1.3 Score=53.94 Aligned_cols=98 Identities=13% Similarity=0.131 Sum_probs=61.8
Q ss_pred cEEEcCChhhHHHHH--HHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec----CCCCch-hhhccCCeEEEEc-----
Q 001292 484 SVRHYGFNGDVNGVL--LMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP----DFPIIK-EYVAEGAQVIFFQ----- 551 (1106)
Q Consensus 484 rV~flG~~eDL~~Ly--aaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS----D~gGI~-EiV~Dg~nG~LV~----- 551 (1106)
++.+.+... -..+| ..+.+||.- +.-++++||+.+|+|+|+- |..... ..++.-..|..+.
T Consensus 343 ~g~v~~W~P-Q~~iL~H~~v~~FvtH------~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~ 415 (481)
T PLN02554 343 IGKVIGWAP-QVAVLAKPAIGGFVTH------CGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRG 415 (481)
T ss_pred CceEEeeCC-HHHHhCCcccCccccc------CccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccc
Confidence 566666432 33456 344445522 5568999999999999986 333444 3344434566553
Q ss_pred --------CCCHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHHHHH
Q 001292 552 --------KDNPEGLSRAFSLFIS-NGKLSKFARTVASAGRLHAKN 588 (1106)
Q Consensus 552 --------~~D~eeLAeAI~~LLs-DpelRk~r~~mGe~Are~ake 588 (1106)
.-+.++++++|.+++. ++++++.++++++.+++-+.+
T Consensus 416 ~~~~~~~~~~~~e~l~~av~~vm~~~~~~r~~a~~l~~~~~~av~~ 461 (481)
T PLN02554 416 DLLAGEMETVTAEEIERGIRCLMEQDSDVRKRVKEMSEKCHVALMD 461 (481)
T ss_pred cccccccCeEcHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Confidence 1268899999999996 666665566666666655433
No 159
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=92.68 E-value=13 Score=39.66 Aligned_cols=38 Identities=21% Similarity=0.348 Sum_probs=31.8
Q ss_pred ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCC
Q 001292 490 FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDF 534 (1106)
Q Consensus 490 ~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~ 534 (1106)
...++..+++.||++|-... |..+=|+++|+|+|+-+.
T Consensus 247 ~~~~~~~~~~~~~~~Is~Rl-------H~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 247 SPDELLELISQADLVISMRL-------HGAILALSLGVPVIAISY 284 (286)
T ss_pred CHHHHHHHHhcCCEEEecCC-------HHHHHHHHcCCCEEEEec
Confidence 55889999999999886543 788999999999998643
No 160
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=92.61 E-value=1.7 Score=55.16 Aligned_cols=138 Identities=11% Similarity=0.009 Sum_probs=93.6
Q ss_pred CCCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcC-CCCcc-----HHHHHHHHHHcCC
Q 001292 407 FLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGN-STDGY-----NDALQEVASRLGL 480 (1106)
Q Consensus 407 L~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~-GperY-----~eeLkeLaeklGL 480 (1106)
+.++...++++=|+..||. ..+.+.-...|.....+ +..|.+. +|++|. +|..| ...+...++..+.
T Consensus 483 ~~p~~lfd~~~kRiheYKR----q~Lnl~~i~~ly~~i~~--d~~prv~-~iFaGKAhP~y~~aK~iIk~I~~~a~~in~ 555 (750)
T COG0058 483 VDPNALFDGQARRIHEYKR----QLLNLLDIERLYRILKE--DWVPRVQ-IIFAGKAHPADYAAKEIIKLINDVADVINN 555 (750)
T ss_pred cCCCcceeeeehhhhhhhh----hHHhHhhHHHHHHHHhc--CCCCceE-EEEeccCCCcchHHHHHHHHHHHHHHhhcc
Confidence 4467888999988887554 44444333334332211 3446664 577887 44321 2233344444444
Q ss_pred CCCcEEEcC--ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhc--cCCeEEEEcC
Q 001292 481 LEHSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVA--EGAQVIFFQK 552 (1106)
Q Consensus 481 ~d~rV~flG--~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~--Dg~nG~LV~~ 552 (1106)
.. +|+|+. .+.-...++.+|||=...|..--|.-|..=+-||..|.+.|++--|...|+.+ +++||+++-.
T Consensus 556 ~l-kVvFl~nYdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanvEi~e~vg~~N~~~fG~ 630 (750)
T COG0058 556 KL-KVVFLPNYDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANVEIYEHVGGENGWIFGE 630 (750)
T ss_pred cc-eEEEeCCCChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHHHHHHHhcCCCceEEeCC
Confidence 33 688887 34556789999999988776544588999999999999999999898888886 7889999953
No 161
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=92.57 E-value=1.9 Score=52.52 Aligned_cols=115 Identities=7% Similarity=0.038 Sum_probs=70.1
Q ss_pred cEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec----CCCCchhhhc-cCCeEEEEcC----CC
Q 001292 484 SVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP----DFPIIKEYVA-EGAQVIFFQK----DN 554 (1106)
Q Consensus 484 rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS----D~gGI~EiV~-Dg~nG~LV~~----~D 554 (1106)
.+++.+... -..+|+...+..+-+. +.-++++||+.+|+|+|+- |.......+. .-..|.-++. -+
T Consensus 339 g~vv~~W~P-Q~~iL~h~~vg~FitH----~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~ 413 (481)
T PLN02992 339 GFVVPSWAP-QAEILAHQAVGGFLTH----CGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVIS 413 (481)
T ss_pred CEEEeecCC-HHHHhCCcccCeeEec----CchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCccc
Confidence 467767442 2346677776333322 6678999999999999986 4444555552 4456766632 37
Q ss_pred HHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHHHH---HhcHHHHHHHHHHHHH
Q 001292 555 PEGLSRAFSLFISNGK---LSKFARTVASAGRLHAK---NMLALDCVTRYARILE 603 (1106)
Q Consensus 555 ~eeLAeAI~~LLsDpe---lRk~r~~mGe~Are~ak---e~fsee~v~~Y~eLye 603 (1106)
.++++++|.+++.+++ .++.++++.+.+++-+. -=++...+..+.+-+.
T Consensus 414 ~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~~v~~~~ 468 (481)
T PLN02992 414 RSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCRVTKECQ 468 (481)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHH
Confidence 8899999999998753 34445555555555552 1234444444444333
No 162
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=92.29 E-value=1.4 Score=53.41 Aligned_cols=82 Identities=12% Similarity=0.075 Sum_probs=54.8
Q ss_pred cEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec----CCCCchhhhccC-CeEEEEc-----CC
Q 001292 484 SVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP----DFPIIKEYVAEG-AQVIFFQ-----KD 553 (1106)
Q Consensus 484 rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS----D~gGI~EiV~Dg-~nG~LV~-----~~ 553 (1106)
++.+.+... -.++|+...+..+-+. +..++++||+.+|+|+|+- |.......+.+. ..|+-+. .-
T Consensus 328 ~g~v~~W~P-Q~~iL~h~~vg~fvtH----~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~ 402 (455)
T PLN02152 328 VGMIVSWCS-QIEVLRHRAVGCFVTH----CGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLV 402 (455)
T ss_pred CeEEEeeCC-HHHHhCCcccceEEee----CCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCCcC
Confidence 566667443 3347777776444433 6678999999999999986 444455555441 2454442 23
Q ss_pred CHHHHHHHHHHHHhCcc
Q 001292 554 NPEGLSRAFSLFISNGK 570 (1106)
Q Consensus 554 D~eeLAeAI~~LLsDpe 570 (1106)
+.++++++|.++++++.
T Consensus 403 ~~e~l~~av~~vm~~~~ 419 (455)
T PLN02152 403 ERGEIRRCLEAVMEEKS 419 (455)
T ss_pred cHHHHHHHHHHHHhhhH
Confidence 68999999999998654
No 163
>PLN02207 UDP-glycosyltransferase
Probab=92.28 E-value=2 Score=52.21 Aligned_cols=100 Identities=15% Similarity=0.112 Sum_probs=60.4
Q ss_pred cEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec----CCCCchhhhcc-CCeEEEE--------
Q 001292 484 SVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP----DFPIIKEYVAE-GAQVIFF-------- 550 (1106)
Q Consensus 484 rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS----D~gGI~EiV~D-g~nG~LV-------- 550 (1106)
++.+.+... -.++|+...+..+-+. ++-++++||+.+|+|+|+- |......++.+ -+.|+-+
T Consensus 333 ~g~i~~W~P-Q~~IL~H~~vg~FvTH----~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~ 407 (468)
T PLN02207 333 RGMICGWSP-QVEILAHKAVGGFVSH----CGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHS 407 (468)
T ss_pred CeEEEEeCC-HHHHhcccccceeeec----CccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEeccccccc
Confidence 555556331 1234555555322222 4557899999999999986 44445554433 3455532
Q ss_pred -cCCCHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHHHH
Q 001292 551 -QKDNPEGLSRAFSLFIS--NGKLSKFARTVASAGRLHAKN 588 (1106)
Q Consensus 551 -~~~D~eeLAeAI~~LLs--DpelRk~r~~mGe~Are~ake 588 (1106)
..-+.++++++|.+++. ++++|+.++++++.+++-+.+
T Consensus 408 ~~~v~~e~i~~av~~vm~~~~~~~r~~a~~l~~~a~~A~~~ 448 (468)
T PLN02207 408 DEIVNANEIETAIRCVMNKDNNVVRKRVMDISQMIQRATKN 448 (468)
T ss_pred CCcccHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcC
Confidence 12367899999999997 455555555566655555443
No 164
>PLN02764 glycosyltransferase family protein
Probab=91.37 E-value=7.3 Score=47.33 Aligned_cols=80 Identities=9% Similarity=-0.011 Sum_probs=51.1
Q ss_pred EEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecC----CCCchhhhcc-CCeEEEEcC-----CC
Q 001292 485 VRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPD----FPIIKEYVAE-GAQVIFFQK-----DN 554 (1106)
Q Consensus 485 V~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD----~gGI~EiV~D-g~nG~LV~~-----~D 554 (1106)
+++.+... -.++|+...+..+-+. +.-++++||+++|+|+|+-. ...+...+.+ -..|+-+.. -+
T Consensus 319 ~v~~~W~P-Q~~vL~h~~v~~FvtH----~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~ 393 (453)
T PLN02764 319 VVWGGWVQ-QPLILSHPSVGCFVSH----CGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFS 393 (453)
T ss_pred cEEeCCCC-HHHHhcCcccCeEEec----CCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccC
Confidence 44545331 2235655544222222 56789999999999999863 4445566643 345654421 37
Q ss_pred HHHHHHHHHHHHhCc
Q 001292 555 PEGLSRAFSLFISNG 569 (1106)
Q Consensus 555 ~eeLAeAI~~LLsDp 569 (1106)
.+++.++|.++++++
T Consensus 394 ~e~i~~av~~vm~~~ 408 (453)
T PLN02764 394 KESLRDAINSVMKRD 408 (453)
T ss_pred HHHHHHHHHHHhcCC
Confidence 899999999999875
No 165
>PLN02555 limonoid glucosyltransferase
Probab=91.24 E-value=6.2 Score=48.24 Aligned_cols=98 Identities=12% Similarity=0.012 Sum_probs=61.6
Q ss_pred cEEEcCChhhHHHHH--HHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec----CCCCchhhhccC-CeEEEEc-----
Q 001292 484 SVRHYGFNGDVNGVL--LMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP----DFPIIKEYVAEG-AQVIFFQ----- 551 (1106)
Q Consensus 484 rV~flG~~eDL~~Ly--aaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS----D~gGI~EiV~Dg-~nG~LV~----- 551 (1106)
++.+.+.... ..+| ..+.+||.- +.-++++||+.+|+|+|+- |.......+.+. +.|+-+.
T Consensus 338 ~g~v~~W~PQ-~~iL~H~~v~~FvtH------~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~ 410 (480)
T PLN02555 338 KGKIVQWCPQ-EKVLAHPSVACFVTH------CGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAE 410 (480)
T ss_pred ceEEEecCCH-HHHhCCCccCeEEec------CCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccc
Confidence 6666674432 3355 345555532 5568999999999999986 344455555544 5666551
Q ss_pred --CCCHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHHHHH
Q 001292 552 --KDNPEGLSRAFSLFISNGK---LSKFARTVASAGRLHAKN 588 (1106)
Q Consensus 552 --~~D~eeLAeAI~~LLsDpe---lRk~r~~mGe~Are~ake 588 (1106)
.-+.++++++|.+++.+++ .|+.++++++.+++-+.+
T Consensus 411 ~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~e 452 (480)
T PLN02555 411 NKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAE 452 (480)
T ss_pred cCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcC
Confidence 1257899999999997653 344445555555544433
No 166
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=90.79 E-value=21 Score=41.30 Aligned_cols=64 Identities=25% Similarity=0.317 Sum_probs=44.5
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcC--ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP 532 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG--~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS 532 (1106)
++++|...+. +..+++++.+.- .+.+.| +..++..+++.||++|-+.+ ..+-=|.|+|+|+|+-
T Consensus 211 Vvl~g~~~e~--e~~~~i~~~~~~---~~~l~~k~sL~e~~~li~~a~l~I~~DS-------g~~HlAaA~~~P~I~i 276 (334)
T COG0859 211 VVLFGGPDEE--ERAEEIAKGLPN---AVILAGKTSLEELAALIAGADLVIGNDS-------GPMHLAAALGTPTIAL 276 (334)
T ss_pred EEEecChHHH--HHHHHHHHhcCC---ccccCCCCCHHHHHHHHhcCCEEEccCC-------hHHHHHHHcCCCEEEE
Confidence 5666665443 677777774432 233667 55899999999999886542 2344589999999985
No 167
>PLN02534 UDP-glycosyltransferase
Probab=89.66 E-value=4.2 Score=49.84 Aligned_cols=112 Identities=10% Similarity=0.028 Sum_probs=64.8
Q ss_pred cEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCC----CCchhhhcc-CCeEEEEc-------
Q 001292 484 SVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDF----PIIKEYVAE-GAQVIFFQ------- 551 (1106)
Q Consensus 484 rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~----gGI~EiV~D-g~nG~LV~------- 551 (1106)
++++.|.... ..+++..++..+-+. +..++++||+++|+|+|+-.. ......+.+ -+.|+-+.
T Consensus 345 g~~v~~w~pq-~~iL~h~~v~~fvtH----~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~ 419 (491)
T PLN02534 345 GLLIKGWAPQ-VLILSHPAIGGFLTH----CGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRW 419 (491)
T ss_pred CeeccCCCCH-HHHhcCCccceEEec----CccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccc
Confidence 5677675433 457777887433332 667899999999999998743 223333322 12333221
Q ss_pred --------CCCHHHHHHHHHHHHhC-----cccHHHHHHHHHHHHHHHHHh-cHHHHHHHHHH
Q 001292 552 --------KDNPEGLSRAFSLFISN-----GKLSKFARTVASAGRLHAKNM-LALDCVTRYAR 600 (1106)
Q Consensus 552 --------~~D~eeLAeAI~~LLsD-----pelRk~r~~mGe~Are~ake~-fsee~v~~Y~e 600 (1106)
.-+.++++++|.+++.+ .+.|+.+.++++.+++-+.+- ++...++.+.+
T Consensus 420 ~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~nl~~fv~ 482 (491)
T PLN02534 420 GDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHINLSILIQ 482 (491)
T ss_pred cccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 13688999999999962 233444555555555554432 23333444433
No 168
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=89.10 E-value=5.5 Score=45.57 Aligned_cols=111 Identities=18% Similarity=0.208 Sum_probs=64.3
Q ss_pred HHHHHHcCCCC-CcEEEEEEcccC-ccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHH
Q 001292 399 YQLRKENGFLK-DEIVVVVVGSSF-FYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVAS 476 (1106)
Q Consensus 399 ~~LR~~lGL~~-d~~VIL~VGRl~-~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLae 476 (1106)
..+...+++.+ +..+++..|... +++ ....+...+.++.|.+ .+.+ +++.|...++ +..+++.+
T Consensus 162 ~~~~~~~~~~~~~~~i~i~pga~~~~~K--~Wp~e~~~~li~~l~~---------~~~~-ivl~G~~~e~--~~~~~i~~ 227 (334)
T TIGR02195 162 AAALAKFGLDTERPIIAFCPGAEFGPAK--RWPHEHYAELAKRLID---------QGYQ-VVLFGSAKDH--PAGNEIEA 227 (334)
T ss_pred HHHHHHcCCCCCCCEEEEcCCCCCCccC--CCCHHHHHHHHHHHHH---------CCCE-EEEEEChhhH--HHHHHHHH
Confidence 34456667654 345556666532 311 3344455555444431 1345 4556655543 55556655
Q ss_pred HcCCCCCcEEEcC--ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec
Q 001292 477 RLGLLEHSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP 532 (1106)
Q Consensus 477 klGL~d~rV~flG--~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS 532 (1106)
.. .+..|.+.| ...++..+++.||++|-.-+ ..+-=|.|+|+|+|+-
T Consensus 228 ~~--~~~~~~l~g~~sL~el~ali~~a~l~I~~DS-------Gp~HlAaA~~~P~i~l 276 (334)
T TIGR02195 228 LL--PGELRNLAGETSLDEAVDLIALAKAVVTNDS-------GLMHVAAALNRPLVAL 276 (334)
T ss_pred hC--CcccccCCCCCCHHHHHHHHHhCCEEEeeCC-------HHHHHHHHcCCCEEEE
Confidence 33 221344677 55899999999999995532 3344578999999975
No 169
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=88.92 E-value=1.6 Score=41.45 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=54.2
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEE---cCCh-h--hHHHHHHHcCeEEEccCCCCCCCcHHHH-----HHHHh
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRH---YGFN-G--DVNGVLLMADIVLYGSSQVEQGFPSLIV-----RAMTF 525 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~f---lG~~-e--DL~~LyaaADVfV~PS~~EeEGFGlvLL-----EAMA~ 525 (1106)
|+|+|.... ...+++.+++.|.. .+.+ .|.. . .+...+..||++|++..+. ++... +|-..
T Consensus 3 liVGG~~~~--~~~~~~~~~~~G~~--~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~v----sH~~~~~vk~~akk~ 74 (97)
T PF10087_consen 3 LIVGGREDR--ERRYKRILEKYGGK--LIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYV----SHNAMWKVKKAAKKY 74 (97)
T ss_pred EEEcCCccc--HHHHHHHHHHcCCE--EEEEecCCCCccchhHHHHhcCCCCEEEEEeCCc----ChHHHHHHHHHHHHc
Confidence 455553443 58999999999987 4666 2222 2 3888999999999987654 45443 45678
Q ss_pred CCCEEecCCCCchhhh
Q 001292 526 GIPVITPDFPIIKEYV 541 (1106)
Q Consensus 526 G~PVIASD~gGI~EiV 541 (1106)
|+|++.++..+...+.
T Consensus 75 ~ip~~~~~~~~~~~l~ 90 (97)
T PF10087_consen 75 GIPIIYSRSRGVSSLE 90 (97)
T ss_pred CCcEEEECCCCHHHHH
Confidence 9999999877766543
No 170
>PLN00414 glycosyltransferase family protein
Probab=88.47 E-value=18 Score=43.89 Aligned_cols=78 Identities=10% Similarity=0.034 Sum_probs=52.2
Q ss_pred EEEcCChhhHHHHHHHcC--eEEEccCCCCCCCcHHHHHHHHhCCCEEec----CCCCchhhhc-cCCeEEEEcC-----
Q 001292 485 VRHYGFNGDVNGVLLMAD--IVLYGSSQVEQGFPSLIVRAMTFGIPVITP----DFPIIKEYVA-EGAQVIFFQK----- 552 (1106)
Q Consensus 485 V~flG~~eDL~~LyaaAD--VfV~PS~~EeEGFGlvLLEAMA~G~PVIAS----D~gGI~EiV~-Dg~nG~LV~~----- 552 (1106)
.++.+... -..+|+.+. .||.- +.-++++||+++|+|+|+- |.......+. .-..|+.+..
T Consensus 314 ~vv~~w~P-Q~~vL~h~~v~~fvtH------~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~ 386 (446)
T PLN00414 314 IVWEGWVE-QPLILSHPSVGCFVNH------CGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGW 386 (446)
T ss_pred eEEeccCC-HHHHhcCCccceEEec------CchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCc
Confidence 44445332 234665664 45532 5568999999999999986 4444556664 3457766632
Q ss_pred CCHHHHHHHHHHHHhCc
Q 001292 553 DNPEGLSRAFSLFISNG 569 (1106)
Q Consensus 553 ~D~eeLAeAI~~LLsDp 569 (1106)
-+.+++++++.+++.++
T Consensus 387 ~~~~~i~~~v~~~m~~~ 403 (446)
T PLN00414 387 FSKESLRDTVKSVMDKD 403 (446)
T ss_pred cCHHHHHHHHHHHhcCC
Confidence 47899999999999875
No 171
>PLN00164 glucosyltransferase; Provisional
Probab=88.46 E-value=2.4 Score=51.62 Aligned_cols=81 Identities=10% Similarity=0.087 Sum_probs=53.5
Q ss_pred EEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec----CCCCchhhhc-cCCeEEEEcC-------
Q 001292 485 VRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP----DFPIIKEYVA-EGAQVIFFQK------- 552 (1106)
Q Consensus 485 V~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS----D~gGI~EiV~-Dg~nG~LV~~------- 552 (1106)
+++.+.. .-..+|+.+++..+-+. +.-++++||+++|+|+|+- |.......+. .-..|+-+..
T Consensus 341 ~~v~~w~-PQ~~iL~h~~vg~fvtH----~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~ 415 (480)
T PLN00164 341 LVWPTWA-PQKEILAHAAVGGFVTH----CGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNF 415 (480)
T ss_pred eEEeecC-CHHHHhcCcccCeEEee----cccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCc
Confidence 5555543 23456777775333332 5568999999999999986 4445555443 3356766532
Q ss_pred CCHHHHHHHHHHHHhCcc
Q 001292 553 DNPEGLSRAFSLFISNGK 570 (1106)
Q Consensus 553 ~D~eeLAeAI~~LLsDpe 570 (1106)
-+.++++++|.+++.+++
T Consensus 416 ~~~e~l~~av~~vm~~~~ 433 (480)
T PLN00164 416 VEAAELERAVRSLMGGGE 433 (480)
T ss_pred CcHHHHHHHHHHHhcCCc
Confidence 267999999999998753
No 172
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=88.17 E-value=2.4 Score=47.22 Aligned_cols=71 Identities=18% Similarity=0.133 Sum_probs=46.9
Q ss_pred CCeEEEEEEcCCCCccHHHHHHHHHHc-CCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEE
Q 001292 452 GSFKFVFLCGNSTDGYNDALQEVASRL-GLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVI 530 (1106)
Q Consensus 452 PdikfLIIVG~GperY~eeLkeLaekl-GL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVI 530 (1106)
|+.+ +++=.||......-..+..+. +.. ++.+.....++..++..||.++.-+ +.+-+||+.+|+|||
T Consensus 154 p~~~--lvvK~HP~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Ll~~s~~Vvtin-------StvGlEAll~gkpVi 222 (269)
T PF05159_consen 154 PDAK--LVVKPHPDERGGNKYSYLEELPNLP--NVVIIDDDVNLYELLEQSDAVVTIN-------STVGLEALLHGKPVI 222 (269)
T ss_pred CCCE--EEEEECchhhCCCChhHhhhhhcCC--CeEEECCCCCHHHHHHhCCEEEEEC-------CHHHHHHHHcCCceE
Confidence 6665 456777731000001222222 333 5777777779999999999988654 468899999999999
Q ss_pred ecC
Q 001292 531 TPD 533 (1106)
Q Consensus 531 ASD 533 (1106)
+--
T Consensus 223 ~~G 225 (269)
T PF05159_consen 223 VFG 225 (269)
T ss_pred Eec
Confidence 953
No 173
>PLN02208 glycosyltransferase family protein
Probab=87.94 E-value=2.3 Score=51.36 Aligned_cols=82 Identities=15% Similarity=0.094 Sum_probs=54.7
Q ss_pred cEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec----CCCCchhhhcc-CCeEEEEcC-----C
Q 001292 484 SVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP----DFPIIKEYVAE-GAQVIFFQK-----D 553 (1106)
Q Consensus 484 rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS----D~gGI~EiV~D-g~nG~LV~~-----~ 553 (1106)
++++.+.... .++|+...+..+-+. +.=++++||+++|+|+|+- |......++.+ -..|+.+.. -
T Consensus 312 g~~v~~W~PQ-~~iL~H~~v~~FvtH----cG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~ 386 (442)
T PLN02208 312 GVVWGGWVQQ-PLILDHPSIGCFVNH----CGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWF 386 (442)
T ss_pred CcEeeccCCH-HHHhcCCccCeEEcc----CCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcC
Confidence 5666564322 236666776444432 5668999999999999986 34445555443 356766643 3
Q ss_pred CHHHHHHHHHHHHhCcc
Q 001292 554 NPEGLSRAFSLFISNGK 570 (1106)
Q Consensus 554 D~eeLAeAI~~LLsDpe 570 (1106)
+.++++++|.++++++.
T Consensus 387 ~~~~l~~ai~~~m~~~~ 403 (442)
T PLN02208 387 SKESLSNAIKSVMDKDS 403 (442)
T ss_pred cHHHHHHHHHHHhcCCc
Confidence 78899999999998763
No 174
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=86.24 E-value=18 Score=46.40 Aligned_cols=151 Identities=9% Similarity=0.046 Sum_probs=104.4
Q ss_pred CCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHH-------HHH----H
Q 001292 409 KDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQE-------VAS----R 477 (1106)
Q Consensus 409 ~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLke-------Lae----k 477 (1106)
.+..+|+-+-++.. .||...=+.|+.+++.++++... .+. |+.+......-.+.+++ .+. +
T Consensus 274 ~g~klilgvD~~d~----~kg~~~Kl~a~e~~L~~~pe~~~---kVv-liqi~~~~~~~~~~v~~~k~~v~~~v~rIn~~ 345 (732)
T KOG1050|consen 274 KGKKLILGVDRLDS----IKGIQLKLLAFEQFLEEYPEWID---KVV-LIQIENPKRTDGKEVEELKFCVSVHVRRINEK 345 (732)
T ss_pred cCCceEeccccccc----ccCchHHHHHHHHHHHhChhhhc---eEE-EEEEecCCcccchHHHHHHHHhHhhhhhhhhc
Confidence 36668888878776 66777778888888888765543 333 44444321110121111 111 1
Q ss_pred cCCCC-CcEEEcC---ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhC----CCEEecCCCCchhhhccCCeEEE
Q 001292 478 LGLLE-HSVRHYG---FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFG----IPVITPDFPIIKEYVAEGAQVIF 549 (1106)
Q Consensus 478 lGL~d-~rV~flG---~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G----~PVIASD~gGI~EiV~Dg~nG~L 549 (1106)
.|-.. ..|+++- +..++..++..+|+++..+..+ |-.++.+|..+|. .+.|.+.+.|..+.+++ ...+
T Consensus 346 f~~~~~~pV~~~~~~~~~~~l~a~~~Vaev~~v~s~rd--Gmnl~~~e~i~~~~~~~~~lVlsef~G~~~tl~d--~aiv 421 (732)
T KOG1050|consen 346 FGSASYQPVHSLLKDLPFLELLALYKVAEVCPVTSWRD--GMNLVFLEYILCQENKKSVLVLSEFIGDDTTLED--AAIV 421 (732)
T ss_pred cCCcccceEEEeeccCCHHHHhhhHHhhhheeeccccc--ccchhhhHHHHhhcccCCceEEeeeccccccccc--cCEE
Confidence 11111 1354444 3468999999999999999876 9999999998885 78899999999888844 4678
Q ss_pred EcCCCHHHHHHHHHHHHhCccc
Q 001292 550 FQKDNPEGLSRAFSLFISNGKL 571 (1106)
Q Consensus 550 V~~~D~eeLAeAI~~LLsDpel 571 (1106)
+.+.|.++++.+|..+++.++.
T Consensus 422 vnpw~~~~~~~~i~~al~~s~~ 443 (732)
T KOG1050|consen 422 VNPWDGDEFAILISKALTMSDE 443 (732)
T ss_pred ECCcchHHHHHHHHHHhhcCHH
Confidence 8999999999999999987764
No 175
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=86.19 E-value=7 Score=45.25 Aligned_cols=103 Identities=15% Similarity=0.181 Sum_probs=58.7
Q ss_pred CcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcC
Q 001292 410 DEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYG 489 (1106)
Q Consensus 410 d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG 489 (1106)
+..+++..|...+.+ ....+...+.++.|.+ .++++++++|.+... .+..+++++...... .+.+.|
T Consensus 183 ~~~i~i~pga~~~~K--~Wp~e~fa~l~~~L~~---------~~~~vvl~ggp~e~e-~~~~~~i~~~~~~~~-~~~l~g 249 (352)
T PRK10422 183 QNYVVIQPTARQIFK--CWDNDKFSAVIDALQA---------RGYEVVLTSGPDKDD-LACVNEIAQGCQTPP-VTALAG 249 (352)
T ss_pred CCeEEEecCCCcccc--CCCHHHHHHHHHHHHH---------CCCeEEEEcCCChHH-HHHHHHHHHhcCCCc-cccccC
Confidence 466777777654422 2234445544444421 234533444444322 233455555333222 355677
Q ss_pred --ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec
Q 001292 490 --FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP 532 (1106)
Q Consensus 490 --~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS 532 (1106)
...++..+++.||++|-.- + ..+-=|.|+|+|+|+-
T Consensus 250 ~~sL~el~ali~~a~l~v~nD-----S--Gp~HlAaA~g~P~v~l 287 (352)
T PRK10422 250 KTTFPELGALIDHAQLFIGVD-----S--APAHIAAAVNTPLICL 287 (352)
T ss_pred CCCHHHHHHHHHhCCEEEecC-----C--HHHHHHHHcCCCEEEE
Confidence 5689999999999999553 2 3344577999999975
No 176
>PRK14986 glycogen phosphorylase; Provisional
Probab=85.00 E-value=7.4 Score=50.16 Aligned_cols=188 Identities=10% Similarity=0.060 Sum_probs=109.6
Q ss_pred CCCCcEEEEEEcccCccccccCCHHH-HHHHHHHhHHHHHhhcc-CCCCeEEEEEEcCCCCcc--HHHHHHHHHHcC---
Q 001292 407 FLKDEIVVVVVGSSFFYNELSWDYAV-AMHDVGPLLIKYARRNS-VEGSFKFVFLCGNSTDGY--NDALQEVASRLG--- 479 (1106)
Q Consensus 407 L~~d~~VIL~VGRl~~y~kg~Kg~dl-LLeA~k~Ll~k~aklk~-~~PdikfLIIVG~GperY--~eeLkeLaeklG--- 479 (1106)
+.++...++++-|+..|| ...+ ++..+..+.. +..... .-.... +|++|.-...| ...+-+++....
T Consensus 539 ldp~sLfd~qakR~heYK----Rq~LNil~~i~ry~~-i~~~p~~~~~P~~-~IFaGKAaP~y~~aK~iIk~I~~va~~i 612 (815)
T PRK14986 539 VNPKALFDVQIKRIHEYK----RQLMNVLHVITRYNR-IKADPDAKWVPRV-NIFAGKAASAYYMAKHIIHLINDVAKVI 612 (815)
T ss_pred cCcccceeeeehhhhhhh----hhhHHHhhhHHHHHH-HHhCCCcCCCCeE-EEEeecCCCCcHHHHHHHHHHHHHHHHh
Confidence 567788888998887744 5555 5555544432 111100 002344 57888732222 122222222111
Q ss_pred -----CCC-CcEEEcC--ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhcc--CCeEEE
Q 001292 480 -----LLE-HSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAE--GAQVIF 549 (1106)
Q Consensus 480 -----L~d-~rV~flG--~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~D--g~nG~L 549 (1106)
+.+ -+|.|+. .+.-...++.+|||-...|..--|.-|..=+-+|..|.+.|++--|...|+.++ ++||++
T Consensus 613 n~Dp~v~~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nvEi~e~vG~eN~~~ 692 (815)
T PRK14986 613 NNDPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLEHVGEENIFI 692 (815)
T ss_pred ccChhhcCceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchhHHHHhcCCCcEEE
Confidence 110 1577777 345677899999999987764345788899999999999999999988888876 789999
Q ss_pred EcCCCHHHHHHHHHH-------HHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcC
Q 001292 550 FQKDNPEGLSRAFSL-------FISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILENVLNF 608 (1106)
Q Consensus 550 V~~~D~eeLAeAI~~-------LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLyeslLk~ 608 (1106)
+- .+.++..+.-.. .-.||+++ +.--....-.|+..-...|..++..++..
T Consensus 693 fG-~~~~ev~~~~~~~Y~~~~~y~~~~~l~-------~~~d~i~~g~f~~~~~~~f~~i~~~l~~~ 750 (815)
T PRK14986 693 FG-NTAEEVEALRRQGYKPREYYEKDEELH-------QVLTQIGSGVFSPEEPGRYRDLVDSLINF 750 (815)
T ss_pred eC-CCHHHHHHHHHcCCChhhhccCCHHHH-------HHHHHHhcCCCCCCCchhHHHHHHHhccC
Confidence 85 345555543221 22344431 11112222334432234577777777653
No 177
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=83.51 E-value=15 Score=42.35 Aligned_cols=103 Identities=15% Similarity=0.209 Sum_probs=58.2
Q ss_pred CcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcC
Q 001292 410 DEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYG 489 (1106)
Q Consensus 410 d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG 489 (1106)
+..+++..|...+++ ....+...+.++.|.. .++. +++.|...+...+..+++.+..+-.. .+.+.|
T Consensus 181 ~~~i~i~p~a~~~~K--~Wp~e~~~~l~~~l~~---------~~~~-ivl~g~p~~~e~~~~~~i~~~~~~~~-~~~l~g 247 (344)
T TIGR02201 181 QNYIVIQPTSRWFFK--CWDNDRFSALIDALHA---------RGYE-VVLTSGPDKDELAMVNEIAQGCQTPR-VTSLAG 247 (344)
T ss_pred CCEEEEeCCCCcccc--CCCHHHHHHHHHHHHh---------CCCe-EEEecCCCHHHHHHHHHHHhhCCCCc-ccccCC
Confidence 455666777544422 2334445544444431 1334 34555422110133455555433222 355677
Q ss_pred --ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec
Q 001292 490 --FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP 532 (1106)
Q Consensus 490 --~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS 532 (1106)
...++..+++.||++|-.- + ..+-=|.|+|+|+|+-
T Consensus 248 ~~sL~el~ali~~a~l~Vs~D-----S--Gp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 248 KLTLPQLAALIDHARLFIGVD-----S--VPMHMAAALGTPLVAL 285 (344)
T ss_pred CCCHHHHHHHHHhCCEEEecC-----C--HHHHHHHHcCCCEEEE
Confidence 5689999999999999553 2 3455588999999985
No 178
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=82.69 E-value=8.5 Score=47.58 Aligned_cols=76 Identities=14% Similarity=0.225 Sum_probs=58.1
Q ss_pred ChhhHHHHHHHcCeEE-EccCCCCCCCcHHHHHHHHhCCCEEecCCCCc---------------h---------h-hhcc
Q 001292 490 FNGDVNGVLLMADIVL-YGSSQVEQGFPSLIVRAMTFGIPVITPDFPII---------------K---------E-YVAE 543 (1106)
Q Consensus 490 ~~eDL~~LyaaADVfV-~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI---------------~---------E-iV~D 543 (1106)
+..++..+|..+-|+| ++.-+| |.+++||+|+|+|-|-+.+... + | .+ .
T Consensus 331 ~~~ef~~lL~~akvfiGlGfP~E----gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~i-G 405 (559)
T PF15024_consen 331 SGDEFQQLLRKAKVFIGLGFPYE----GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFI-G 405 (559)
T ss_pred CHHHHHHHHHhhhEeeecCCCCC----CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhC-C
Confidence 3679999999999999 344455 8899999999999998754311 1 1 22 1
Q ss_pred CCeEEEEcCCCHHHHHHHHHHHHhCcc
Q 001292 544 GAQVIFFQKDNPEGLSRAFSLFISNGK 570 (1106)
Q Consensus 544 g~nG~LV~~~D~eeLAeAI~~LLsDpe 570 (1106)
.-.-+.|+.+|.+++.+||.+++.++-
T Consensus 406 ~PhVytVd~~n~~~v~~Avk~il~~~v 432 (559)
T PF15024_consen 406 EPHVYTVDINNSTEVEAAVKAILATPV 432 (559)
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHhcCC
Confidence 236678888999999999999999863
No 179
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=82.36 E-value=18 Score=40.98 Aligned_cols=99 Identities=17% Similarity=0.099 Sum_probs=56.1
Q ss_pred CcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcC
Q 001292 410 DEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYG 489 (1106)
Q Consensus 410 d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG 489 (1106)
+..+++..|.....+ ..-.+...+.++.|.+ .+.. ++++|.+++. .+..+++.+. ++ .+.+.|
T Consensus 179 ~~~i~i~~gas~~~K--~wp~e~~~~l~~~l~~---------~~~~-~vl~~g~~~e-~~~~~~i~~~--~~--~~~l~g 241 (319)
T TIGR02193 179 APYAVLLHATSRDDK--TWPEERWRELARLLLA---------RGLQ-IVLPWGNDAE-KQRAERIAEA--LP--GAVVLP 241 (319)
T ss_pred CCEEEEEeCCCcccC--CCCHHHHHHHHHHHHH---------CCCe-EEEeCCCHHH-HHHHHHHHhh--CC--CCeecC
Confidence 455667777544311 2233445544444431 1334 3444333321 2445565553 33 235567
Q ss_pred --ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec
Q 001292 490 --FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP 532 (1106)
Q Consensus 490 --~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS 532 (1106)
...++..+++.||++|..- + ..+-=|.|+|+|+|+-
T Consensus 242 ~~sL~el~ali~~a~l~I~~D-----S--gp~HlAaa~g~P~i~l 279 (319)
T TIGR02193 242 KMSLAEVAALLAGADAVVGVD-----T--GLTHLAAALDKPTVTL 279 (319)
T ss_pred CCCHHHHHHHHHcCCEEEeCC-----C--hHHHHHHHcCCCEEEE
Confidence 5689999999999999653 2 2344477899999975
No 180
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=81.86 E-value=20 Score=45.76 Aligned_cols=146 Identities=10% Similarity=0.043 Sum_probs=81.1
Q ss_pred CCCCcEEEEEEcccCccccccCCHHH-HHHHHHHhHHHHHhhc-cCCCCeEEEEEEcC-CCCcc-HHHHHHHHHHc----
Q 001292 407 FLKDEIVVVVVGSSFFYNELSWDYAV-AMHDVGPLLIKYARRN-SVEGSFKFVFLCGN-STDGY-NDALQEVASRL---- 478 (1106)
Q Consensus 407 L~~d~~VIL~VGRl~~y~kg~Kg~dl-LLeA~k~Ll~k~aklk-~~~PdikfLIIVG~-GperY-~eeLkeLaekl---- 478 (1106)
+.++...++++-|+..|| ...+ ++..+..+.. ..... ....... +|++|. +|..+ ..++-+++...
T Consensus 440 ldp~slfdv~~rR~heYK----Rq~LniL~ii~~y~r-ik~~p~~~~~Pv~-~IFaGKAhP~d~~gK~iIk~I~~va~~i 513 (713)
T PF00343_consen 440 LDPDSLFDVQARRFHEYK----RQLLNILHIIDRYNR-IKNNPNKKIRPVQ-FIFAGKAHPGDYMGKEIIKLINNVAEVI 513 (713)
T ss_dssp --TTSEEEEEES-SCCCC----THHHHHHHHHHHHHH-HHHSTTSCCS-EE-EEEE----TT-HHHHHHHHHHHHHHHHH
T ss_pred CCcchhhhhhhhhccccc----ccCcccccHHHHHHH-HHhcccCCCCCeE-EEEeccCCCCcHHHHHHHHHHHHHHHHH
Confidence 577888899998888754 4455 4444433321 11111 1112344 688887 44321 22333333221
Q ss_pred ----CCCC-CcEEEcC--ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhcc--CCeEEE
Q 001292 479 ----GLLE-HSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAE--GAQVIF 549 (1106)
Q Consensus 479 ----GL~d-~rV~flG--~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~D--g~nG~L 549 (1106)
.+.+ .+|+|+. .+.-...++.+|||-...|..--|.-|..-+-||..|.+.|++--|...|+.+. .++.++
T Consensus 514 n~Dp~v~~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~niEi~e~vG~eN~fi 593 (713)
T PF00343_consen 514 NNDPEVGDRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGWNIEIAEAVGEENIFI 593 (713)
T ss_dssp CT-TTTCCGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTCHHHHHHHH-GGGSEE
T ss_pred hcChhhccceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccchhHHHHHhcCCCcEEE
Confidence 1221 1578887 446677899999999988765446899999999999999999988888887643 357777
Q ss_pred EcCCCHHHHH
Q 001292 550 FQKDNPEGLS 559 (1106)
Q Consensus 550 V~~~D~eeLA 559 (1106)
+- .+.+++.
T Consensus 594 FG-~~~~ev~ 602 (713)
T PF00343_consen 594 FG-LTAEEVE 602 (713)
T ss_dssp ES--BHHHHH
T ss_pred cC-CCHHHHH
Confidence 74 3455443
No 181
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=81.19 E-value=1.1e+02 Score=35.26 Aligned_cols=290 Identities=14% Similarity=0.129 Sum_probs=136.1
Q ss_pred hhHHHHHHHHHHHHHCCCEEEEEEcCCCC-----c---------hHHHHHHhHHHHHhhccCccEEEEcccc-----HHH
Q 001292 236 SRSLLLITVVKNLQKLGYVFKIYAVRSGN-----S---------HSLWEQIAGQISILGQEQYSLIDWSIFD-----GII 296 (1106)
Q Consensus 236 Gesl~vv~LakaLqe~GyeVtV~t~~dg~-----~---------~~i~r~lg~lvkiIr~~~pDiIh~~~~~-----~i~ 296 (1106)
|++......-..+.+.|++++++...+.. . ....+.+...++.+. .||++-+..+. ..+
T Consensus 2 GVTr~a~e~~~wf~KNg~~~~i~~a~e~sftR~dsH~~~~~si~k~~~~e~de~v~~vN--~yDI~m~nSvPa~~vqE~~ 79 (355)
T PF11440_consen 2 GVTRNALEMRDWFDKNGVEFTIVSADEKSFTRPDSHDSKSFSIPKYLAKEYDETVKKVN--DYDIVMFNSVPATKVQEAI 79 (355)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEETSS--TTTTSSS-TTTEEEE-TTTHHHHHHHHHT--SSSEEEEEE--BTTS-HHH
T ss_pred CccccHHHHHHHHHhcCCeeEEEEecccccCCccccccceeeeehhhHHHHHHHHHHhh--ccCEEEEecccCchHHHHH
Confidence 67788888888899999999999874321 1 011122222444444 78877664333 223
Q ss_pred HHHHHHHHhhhhcccCCCCCCcEEEEEcCCc-c-cccchhhhhhhHHhHHHHHHHHhccccEEEecCCChhhh---h-cC
Q 001292 297 ADSLEAKEAISSLMQEPFHSIPLVWIIQEDS-L-ANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPML---Y-SV 370 (1106)
Q Consensus 297 v~~La~k~~idII~te~~~gIPVI~tIHna~-L-s~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~~~~~~---~-~g 370 (1106)
+....+ .+- .....+.+|...|+-. + ..+.++ +...++.+|.|...+....-. . .-
T Consensus 80 iNnY~k-ii~-----~Ik~~ik~V~~~Hdh~~lsI~rn~~------------le~~m~~~DvIfshs~~g~f~kv~m~~l 141 (355)
T PF11440_consen 80 INNYEK-IIK-----KIKPSIKVVGFMHDHNKLSIDRNPY------------LEGTMNEMDVIFSHSDNGWFSKVLMKEL 141 (355)
T ss_dssp HHHHHH-HHH-----CS-TTSEEEEEE---SHHHHTTBSS------------HHHHHHH-SEEEES-TTSHHHHTHHHHH
T ss_pred HHHHHH-HHH-----hccccceeEEEeeccceeecccccc------------HHHHHHhhcEEEeccccchHHHHHHHhh
Confidence 333322 110 0023456677778732 1 122222 234578999998876432111 1 11
Q ss_pred CCC-----CCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEE---EEEcccCccccccCCHHHHHHHHHHhHH
Q 001292 371 LDA-----GNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVV---VVVGSSFFYNELSWDYAVAMHDVGPLLI 442 (1106)
Q Consensus 371 i~~-----~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VI---L~VGRl~~y~kg~Kg~dlLLeA~k~Ll~ 442 (1106)
+|. +++.-.|.. -.|.+...-...|..+-.....+.. +++||... .||+..+++.....++
T Consensus 142 ~Ps~~~l~~~i~~~p~v-------~nfqpp~~i~~~Rstywkd~se~nmnv~~yigR~Tt----~kG~~~mfD~h~~~lK 210 (355)
T PF11440_consen 142 LPSKVSLFDRIKKFPMV-------FNFQPPMDINKYRSTYWKDVSEKNMNVNRYIGRQTT----WKGPRRMFDLHEKILK 210 (355)
T ss_dssp S-SS--SSS-------E-------EE----B-HHHHHHHH---GGGSEEEEEEEE--SSG----GG-HHHHHHHHHHTTT
T ss_pred ccccCchhhhhhhccee-------eecCCcccHHHHHHHHhhhhHhhhcccceeeeeeee----ecCcHHHhhhHHHhcC
Confidence 221 223333321 1233322223445544433344444 89999888 8899999998866542
Q ss_pred HHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHH------cCC---------CCCcEEEcC-Ch-hhHHHHHHHcCeEE
Q 001292 443 KYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASR------LGL---------LEHSVRHYG-FN-GDVNGVLLMADIVL 505 (1106)
Q Consensus 443 k~aklk~~~PdikfLIIVG~GperY~eeLkeLaek------lGL---------~d~rV~flG-~~-eDL~~LyaaADVfV 505 (1106)
. ++++ -++-|-... .+.-...++ .+. ++..|-++| +. +++.+.++.+-..+
T Consensus 211 ------~--~~~~-t~~~GierS---~A~~~i~d~~~~~~y~~~~~~~~~~~~pN~~~~v~~~Yi~~E~~~~Maks~Fgy 278 (355)
T PF11440_consen 211 ------P--AGFK-TIMEGIERS---PAKISIKDHGIPYEYYPKLDCDEPKPAPNSPVPVYGPYIRSEGLERMAKSLFGY 278 (355)
T ss_dssp ------T--TT-E-EEEE---SS---THHHHHHHTT--EEEE-CTGGGG---SSS--EEEESS--HHHHHHHHHTEEEEE
T ss_pred ------C--cchh-HHhhhhhcC---CceeeeecCCcccccCccccccCcccCCCCcceecchhhhHHHHHHHhhcccee
Confidence 2 5666 466664332 122222222 111 223477777 33 78888888887766
Q ss_pred EccCCC----CCCCcHHHHHHHHhC-CCEEecCCCCc-------hhhhccCCeEEEEcCCCHHHHHHHHHHHHhC
Q 001292 506 YGSSQV----EQGFPSLIVRAMTFG-IPVITPDFPII-------KEYVAEGAQVIFFQKDNPEGLSRAFSLFISN 568 (1106)
Q Consensus 506 ~PS~~E----eEGFGlvLLEAMA~G-~PVIASD~gGI-------~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsD 568 (1106)
.-+... .+..-.+-+|..||| +||.-...|.. .-++.+....+.++..|.++-.+.|.++.++
T Consensus 279 ~~~k~~~~y~~r~mEYt~iE~~A~GtIPVF~k~~GEN~r~~~D~~~~~~~~~~~I~~De~dle~T~ekl~E~a~~ 353 (355)
T PF11440_consen 279 QLSKLQQKYLQRSMEYTQIELIAVGTIPVFDKSWGENNRFTLDGTRYIDHPYSAIYFDENDLESTVEKLIEVANN 353 (355)
T ss_dssp E-----GGG-SS---HHHHHHHHCTSEEEEEHHHHHHSB-TTTSSBGGSS--S-EEE-TTSHHHHHHHHHHHHT-
T ss_pred ecHHHHHHHHHhhhhhheeeeeeeceeeeeeccccccceeeecCceeeccCcceeEeccchHHHHHHHHHHHhcc
Confidence 444211 124568899999999 56665543332 2344444556677888888888888887664
No 182
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=80.43 E-value=8.5 Score=49.53 Aligned_cols=148 Identities=14% Similarity=0.026 Sum_probs=92.9
Q ss_pred CCCCcEEEEEEcccCccccccCCHHH-HHHHHHHhHHHHHhhccC-CCCeEEEEEEcCCCCcc--HHHHHHHHHHcC---
Q 001292 407 FLKDEIVVVVVGSSFFYNELSWDYAV-AMHDVGPLLIKYARRNSV-EGSFKFVFLCGNSTDGY--NDALQEVASRLG--- 479 (1106)
Q Consensus 407 L~~d~~VIL~VGRl~~y~kg~Kg~dl-LLeA~k~Ll~k~aklk~~-~PdikfLIIVG~GperY--~eeLkeLaeklG--- 479 (1106)
+.++.+.++++-|+..|| .+.+ ++..+..+.. +...... -.... +|++|.-...| ...+-+++....
T Consensus 523 ldp~slfdvq~KR~heYK----Rq~LNil~ii~~y~~-i~~~p~~~~~P~~-~IFaGKAaP~y~~aK~iIklI~~va~~i 596 (794)
T TIGR02093 523 VDPNSIFDVQVKRLHEYK----RQLLNVLHVIYLYNR-IKEDPPKDIVPRT-VIFGGKAAPGYHMAKLIIKLINSVAEVV 596 (794)
T ss_pred cCccccchhhheechhhh----HHHHHHhhhHHHHHH-HHhCCCcCCCCeE-EEEEecCCCCcHHHHHHHHHHHHHHHHh
Confidence 557778888888877744 4555 5555544431 1111110 01334 57888733222 233333333222
Q ss_pred -----CCC-CcEEEcC--ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhcc--CCeEEE
Q 001292 480 -----LLE-HSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAE--GAQVIF 549 (1106)
Q Consensus 480 -----L~d-~rV~flG--~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~D--g~nG~L 549 (1106)
+.+ -+|+|+. .+.-...++.+|||-..-|..--|.-|..=+-+|..|.+.|++--|...|+.++ ++|+++
T Consensus 597 N~Dp~v~~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanvEi~e~vG~eN~fi 676 (794)
T TIGR02093 597 NNDPAVGDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIREEVGAENIFI 676 (794)
T ss_pred ccChhhCCceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhHHHHHHhCcccEEE
Confidence 111 1577777 346677999999999987764345788889999999999999988888888766 679988
Q ss_pred EcCCCHHHHHHH
Q 001292 550 FQKDNPEGLSRA 561 (1106)
Q Consensus 550 V~~~D~eeLAeA 561 (1106)
|- .+.++..+.
T Consensus 677 FG-~~~~ev~~~ 687 (794)
T TIGR02093 677 FG-LTVEEVEAL 687 (794)
T ss_pred cC-CCHHHHHHH
Confidence 85 345555543
No 183
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=79.92 E-value=14 Score=42.18 Aligned_cols=99 Identities=17% Similarity=0.113 Sum_probs=56.2
Q ss_pred CcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcC
Q 001292 410 DEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYG 489 (1106)
Q Consensus 410 d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG 489 (1106)
...+++..|....++ ..-.+...+.+..|.+ .++++++++|...+. +..+++++. .+ .+.+.|
T Consensus 178 ~~~i~~~~~~s~~~k--~Wp~e~~a~li~~l~~---------~~~~ivl~~G~~~e~--~~~~~i~~~--~~--~~~l~g 240 (322)
T PRK10964 178 GPYLVFLHATTRDDK--HWPEAHWRELIGLLAP---------SGLRIKLPWGAEHEE--QRAKRLAEG--FP--YVEVLP 240 (322)
T ss_pred CCeEEEEeCCCcccc--cCCHHHHHHHHHHHHH---------CCCeEEEeCCCHHHH--HHHHHHHcc--CC--cceecC
Confidence 444444555433211 2344455555544431 133433334643333 455555442 22 466777
Q ss_pred --ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec
Q 001292 490 --FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP 532 (1106)
Q Consensus 490 --~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS 532 (1106)
...++..+++.||++|-.-+ ..+-=|.|+|+|+|+-
T Consensus 241 ~~sL~elaali~~a~l~I~nDS-------Gp~HlA~A~g~p~val 278 (322)
T PRK10964 241 KLSLEQVARVLAGAKAVVSVDT-------GLSHLTAALDRPNITL 278 (322)
T ss_pred CCCHHHHHHHHHhCCEEEecCC-------cHHHHHHHhCCCEEEE
Confidence 56899999999999996532 3445588999999985
No 184
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=79.60 E-value=32 Score=41.37 Aligned_cols=138 Identities=15% Similarity=0.180 Sum_probs=71.7
Q ss_pred CcEEEEEEcccCcccccc-CCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCC---CCcE
Q 001292 410 DEIVVVVVGSSFFYNELS-WDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLL---EHSV 485 (1106)
Q Consensus 410 d~~VIL~VGRl~~y~kg~-Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~---d~rV 485 (1106)
...+++..|+........ +....++.++..+ +++.|+...-..... . +.+ ++. .++|
T Consensus 277 ~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~-----------~~~~FiW~~~~~~~~--~----~~~--~~~~~~~~nV 337 (496)
T KOG1192|consen 277 HSVVYISFGSMVNSADLPEEQKKELAKALESL-----------QGVTFLWKYRPDDSI--Y----FPE--GLPNRGRGNV 337 (496)
T ss_pred CCeEEEECCcccccccCCHHHHHHHHHHHHhC-----------CCceEEEEecCCcch--h----hhh--cCCCCCcCce
Confidence 356777778765211111 1223344444322 345566665544332 1 222 332 2368
Q ss_pred EEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEe-c---CCCCchhhhcc-CCeEEEEcC--CCHHHH
Q 001292 486 RHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVIT-P---DFPIIKEYVAE-GAQVIFFQK--DNPEGL 558 (1106)
Q Consensus 486 ~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIA-S---D~gGI~EiV~D-g~nG~LV~~--~D~eeL 558 (1106)
.+.+......-++...-+-.+-+. |+=++++||+.+|+|+|+ + |..-....+.+ +..+.+... .+.+ +
T Consensus 338 ~~~~W~PQ~~lll~H~~v~~FvTH----gG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~~~~~~-~ 412 (496)
T KOG1192|consen 338 VLSKWAPQNDLLLDHPAVGGFVTH----GGWNSTLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRDLVSEE-L 412 (496)
T ss_pred EEecCCCcHHHhcCCCcCcEEEEC----CcccHHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhhcCcHH-H
Confidence 887744443333333223222222 222455999999999994 4 44445555544 444444422 2333 8
Q ss_pred HHHHHHHHhCccc
Q 001292 559 SRAFSLFISNGKL 571 (1106)
Q Consensus 559 AeAI~~LLsDpel 571 (1106)
.+++..++++++.
T Consensus 413 ~~~~~~il~~~~y 425 (496)
T KOG1192|consen 413 LEAIKEILENEEY 425 (496)
T ss_pred HHHHHHHHcChHH
Confidence 9999999998886
No 185
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=78.07 E-value=11 Score=48.70 Aligned_cols=147 Identities=13% Similarity=0.044 Sum_probs=91.7
Q ss_pred CCCCcEEEEEEcccCccccccCCHHH-HHHHHHHhHHHHHhhcc-CCCCeEEEEEEcCCCCcc--HHHHHHHHHHcC---
Q 001292 407 FLKDEIVVVVVGSSFFYNELSWDYAV-AMHDVGPLLIKYARRNS-VEGSFKFVFLCGNSTDGY--NDALQEVASRLG--- 479 (1106)
Q Consensus 407 L~~d~~VIL~VGRl~~y~kg~Kg~dl-LLeA~k~Ll~k~aklk~-~~PdikfLIIVG~GperY--~eeLkeLaeklG--- 479 (1106)
+.++...++++-|+..|| .+.+ ++..+..+.. +..... .-.... +|++|.-...| ...+-+++....
T Consensus 526 ldp~slfdvq~KR~heYK----Rq~LNil~ii~~y~~-i~~~p~~~~~P~~-~IFaGKAaP~y~~aK~iIklI~~va~~i 599 (797)
T cd04300 526 VDPDSLFDVQVKRIHEYK----RQLLNVLHIIHLYNR-IKENPNADIVPRT-FIFGGKAAPGYYMAKLIIKLINAVADVV 599 (797)
T ss_pred cCCCccEEEEeeechhhh----hhhhHHHhhHHHHHH-HHhCCCcCCCCeE-EEEeccCCCCcHHHHHHHHHHHHHHHHh
Confidence 567888999998888754 4455 5555443331 111100 002244 57888732222 222222222211
Q ss_pred -----CCC-CcEEEcC--ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhcc--CCeEEE
Q 001292 480 -----LLE-HSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAE--GAQVIF 549 (1106)
Q Consensus 480 -----L~d-~rV~flG--~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~D--g~nG~L 549 (1106)
+.+ -+|.|+. .+.-...++.+|||-..-|..--|.-|..=+-+|..|.+.|++--|...|+.++ ++|+++
T Consensus 600 n~Dp~v~~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanvEi~e~vG~eN~fi 679 (797)
T cd04300 600 NNDPDVGDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIAEEVGEENIFI 679 (797)
T ss_pred ccChhcCCceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhHHHHHHhCcCcEEE
Confidence 110 1577777 346677999999999987764345788889999999999999988888888766 679998
Q ss_pred EcCCCHHHHHH
Q 001292 550 FQKDNPEGLSR 560 (1106)
Q Consensus 550 V~~~D~eeLAe 560 (1106)
|- .+.++..+
T Consensus 680 FG-~~~~ev~~ 689 (797)
T cd04300 680 FG-LTAEEVEA 689 (797)
T ss_pred eC-CCHHHHHH
Confidence 85 34555443
No 186
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=75.89 E-value=21 Score=37.42 Aligned_cols=103 Identities=18% Similarity=0.291 Sum_probs=61.7
Q ss_pred cEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCC
Q 001292 411 EIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGF 490 (1106)
Q Consensus 411 ~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~ 490 (1106)
..+++.||.- -++.++.+.. .+++.+...+..=.++++-.|+|.-...+......+..|+ .|....+
T Consensus 4 ~~vFVTVGtT--------~Fd~LI~~Vl--~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~k~~gl---~id~y~f 70 (170)
T KOG3349|consen 4 MTVFVTVGTT--------SFDDLISCVL--SEEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIRKNGGL---TIDGYDF 70 (170)
T ss_pred eEEEEEeccc--------cHHHHHHHHc--CHHHHHHHHHcCccEEEEEecCCccCCCCHHHhhcccCCe---EEEEEec
Confidence 3477888841 2566776551 1122111111122256677999832223344433332233 2555557
Q ss_pred hhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec
Q 001292 491 NGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP 532 (1106)
Q Consensus 491 ~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS 532 (1106)
...+.+++..||+++-- +...+++|-+..|+|.|+-
T Consensus 71 ~psl~e~I~~AdlVIsH------AGaGS~letL~l~KPlivV 106 (170)
T KOG3349|consen 71 SPSLTEDIRSADLVISH------AGAGSCLETLRLGKPLIVV 106 (170)
T ss_pred CccHHHHHhhccEEEec------CCcchHHHHHHcCCCEEEE
Confidence 78899999999998832 4567899999999998875
No 187
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=75.45 E-value=17 Score=39.39 Aligned_cols=104 Identities=17% Similarity=0.298 Sum_probs=53.2
Q ss_pred CCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEE
Q 001292 408 LKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRH 487 (1106)
Q Consensus 408 ~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~f 487 (1106)
.++..+++..|.... .|... .+-+.+|.+.+ .+. . .. ++++|...+...+...++.+ ++.+..+.+
T Consensus 103 ~~~~~i~i~~~a~~~----~k~wp--~e~~~~l~~~l---~~~-~-~~-vvl~g~~~~~~~~~~~~~~~--~~~~~~~~~ 168 (247)
T PF01075_consen 103 KDKPYIGINPGASWP----SKRWP--AEKWAELIERL---KER-G-YR-VVLLGGPEEQEKEIADQIAA--GLQNPVINL 168 (247)
T ss_dssp TTSSEEEEE---SSG----GGS----HHHHHHHHHHH---CCC-T--E-EEE--SSHHHHHHHHHHHHT--THTTTTEEE
T ss_pred ccCCeEEEeecCCCc----cccCC--HHHHHHHHHHH---Hhh-C-ce-EEEEccchHHHHHHHHHHHH--hcccceEee
Confidence 345667777775443 44432 23344444322 122 1 45 45566554310133344444 222125788
Q ss_pred cC--ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec
Q 001292 488 YG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP 532 (1106)
Q Consensus 488 lG--~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS 532 (1106)
.| ...++..+++.||++|.+-+ ..+-=|.|+|+|+|+-
T Consensus 169 ~~~~~l~e~~ali~~a~~~I~~Dt-------g~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 169 AGKTSLRELAALISRADLVIGNDT-------GPMHLAAALGTPTVAL 208 (247)
T ss_dssp TTTS-HHHHHHHHHTSSEEEEESS-------HHHHHHHHTT--EEEE
T ss_pred cCCCCHHHHHHHHhcCCEEEecCC-------hHHHHHHHHhCCEEEE
Confidence 88 55889999999999996632 3455589999999986
No 188
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=74.61 E-value=2e+02 Score=34.61 Aligned_cols=92 Identities=15% Similarity=0.181 Sum_probs=59.6
Q ss_pred HHHHHHHHHcCCCCCcEEEcC-Ch-hhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCC----Cchhhhc
Q 001292 469 DALQEVASRLGLLEHSVRHYG-FN-GDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYVA 542 (1106)
Q Consensus 469 eeLkeLaeklGL~d~rV~flG-~~-eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~g----GI~EiV~ 542 (1106)
.-.+.++....-.+ +|.+.. .. +++...++.||++| ++.+ |+++=||+.|+|+|+-+.. ++.+.+
T Consensus 253 ~va~~ia~~~~~~~-~i~~~~d~~~~~~~~~l~~~dl~V-g~R~------HsaI~al~~g~p~i~i~Y~~K~~~l~~~~- 323 (385)
T COG2327 253 AVADAIAQLVLDSA-EILVSSDEYAEELGGILAACDLIV-GMRL------HSAIMALAFGVPAIAIAYDPKVRGLMQDL- 323 (385)
T ss_pred HHHHHHHhhcCCcc-ceEeecchHHHHHHHHhccCceEE-eehh------HHHHHHHhcCCCeEEEeecHHHHHHHHHc-
Confidence 44445554443233 677776 33 57788999999977 5565 8899999999999987543 444444
Q ss_pred cCCeEEEE--cCCCHHHHHHHHHHHHhCcc
Q 001292 543 EGAQVIFF--QKDNPEGLSRAFSLFISNGK 570 (1106)
Q Consensus 543 Dg~nG~LV--~~~D~eeLAeAI~~LLsDpe 570 (1106)
+..++.. .+.|.+.+..+..+.+.+-+
T Consensus 324 -gl~~~~~~i~~~~~~~l~~~~~e~~~~~~ 352 (385)
T COG2327 324 -GLPGFAIDIDPLDAEILSAVVLERLTKLD 352 (385)
T ss_pred -CCCcccccCCCCchHHHHHHHHHHHhccH
Confidence 3334433 33567777777777665433
No 189
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=74.34 E-value=13 Score=47.83 Aligned_cols=147 Identities=10% Similarity=0.007 Sum_probs=91.4
Q ss_pred CCCCcEEEEEEcccCccccccCCHHH-HHHHHHHhHHHHHhhcc-CCCCeEEEEEEcCCCCcc--HHHHHHHHHHcC---
Q 001292 407 FLKDEIVVVVVGSSFFYNELSWDYAV-AMHDVGPLLIKYARRNS-VEGSFKFVFLCGNSTDGY--NDALQEVASRLG--- 479 (1106)
Q Consensus 407 L~~d~~VIL~VGRl~~y~kg~Kg~dl-LLeA~k~Ll~k~aklk~-~~PdikfLIIVG~GperY--~eeLkeLaeklG--- 479 (1106)
+.++...++++-|+..|| .+.+ ++..+..+.. ...... .-.... +|++|.-...| ...+-+++....
T Consensus 525 ldp~slfdvq~kR~heYK----Rq~Lnil~ii~~y~~-i~~~p~~~~~P~~-~IFaGKAaP~y~~aK~iIklI~~va~~i 598 (798)
T PRK14985 525 INPQAIFDVQIKRLHEYK----RQHLNLLHILALYKE-IRENPQADRVPRV-FLFGAKAAPGYYLAKNIIFAINKVAEVI 598 (798)
T ss_pred cCchhcchhhHhhhhhhh----hhhhHhhhhHHHHHH-HHhCCCcCCCCeE-EEEeecCCCCcHHHHHHHHHHHHHHHHh
Confidence 567788888888877754 4455 5555444332 111100 001244 57888732222 222223332221
Q ss_pred -CC---CC--cEEEcC--ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhcc--CCeEEE
Q 001292 480 -LL---EH--SVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAE--GAQVIF 549 (1106)
Q Consensus 480 -L~---d~--rV~flG--~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~D--g~nG~L 549 (1106)
-. .+ +|+|+. .+.-...++.+|||-..-|..--|.-|..=+-+|..|.+.|++--|...|+.++ ++||++
T Consensus 599 n~Dp~v~~~lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanvEi~e~vG~eN~f~ 678 (798)
T PRK14985 599 NNDPLVGDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEQVGEENIFI 678 (798)
T ss_pred cCChhhCCceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHHHHHHHhCcCcEEE
Confidence 10 11 577777 346677999999999987764345788899999999999999988888888765 679998
Q ss_pred EcCCCHHHHHH
Q 001292 550 FQKDNPEGLSR 560 (1106)
Q Consensus 550 V~~~D~eeLAe 560 (1106)
+- .+.+++.+
T Consensus 679 fG-~~~~ev~~ 688 (798)
T PRK14985 679 FG-HTVEQVKA 688 (798)
T ss_pred eC-CCHHHHHH
Confidence 85 34444443
No 190
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=72.60 E-value=4 Score=45.59 Aligned_cols=70 Identities=14% Similarity=0.174 Sum_probs=50.8
Q ss_pred hhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhC-CCEEecCCCC--chhhhccCCeEEEEcCCCHHHHHHHHH
Q 001292 492 GDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFG-IPVITPDFPI--IKEYVAEGAQVIFFQKDNPEGLSRAFS 563 (1106)
Q Consensus 492 eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G-~PVIASD~gG--I~EiV~Dg~nG~LV~~~D~eeLAeAI~ 563 (1106)
.+..+.|+.|..+++|.-.. .+..-++|||++| +|||.++.-- ..++|+=....+.++..+..+|.+.|.
T Consensus 228 ~~~~~~l~~S~FCL~p~G~~--~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~v~~~~~~~l~~iL~ 300 (302)
T PF03016_consen 228 SEYMELLRNSKFCLCPRGDG--PWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVRVPEADLPELPEILR 300 (302)
T ss_pred hHHHHhcccCeEEEECCCCC--cccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEEECHHHHHHHHHHHh
Confidence 35788899999999987543 5789999999999 8999886432 346665556777777666655555543
No 191
>PLN03015 UDP-glucosyl transferase
Probab=66.75 E-value=22 Score=43.57 Aligned_cols=99 Identities=12% Similarity=0.037 Sum_probs=56.7
Q ss_pred EEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCC----CCchhhh-ccCCeEEEEc------CC
Q 001292 485 VRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDF----PIIKEYV-AEGAQVIFFQ------KD 553 (1106)
Q Consensus 485 V~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~----gGI~EiV-~Dg~nG~LV~------~~ 553 (1106)
+++.+.... .++|+...+..+-+. +.-++++||+++|+|+|+-.. ......+ +.-..|+-+. .-
T Consensus 337 l~v~~W~PQ-~~vL~h~~vg~fvtH----~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v 411 (470)
T PLN03015 337 LVVTQWAPQ-VEILSHRSIGGFLSH----CGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVI 411 (470)
T ss_pred eEEEecCCH-HHHhccCccCeEEec----CCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCcc
Confidence 445553322 224455555333322 556899999999999998643 3344444 2334555442 23
Q ss_pred CHHHHHHHHHHHHhC-----cccHHHHHHHHHHHHHHHHH
Q 001292 554 NPEGLSRAFSLFISN-----GKLSKFARTVASAGRLHAKN 588 (1106)
Q Consensus 554 D~eeLAeAI~~LLsD-----pelRk~r~~mGe~Are~ake 588 (1106)
..++++++|.+++.. .+.|+.++++.+.+++-+.+
T Consensus 412 ~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~e 451 (470)
T PLN03015 412 GREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSH 451 (470)
T ss_pred CHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcC
Confidence 678999999999952 23344455555555554433
No 192
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=66.63 E-value=13 Score=37.78 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=45.6
Q ss_pred HHHHHHcCeEEEc--cCCCCCCCcHHHH---HHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHH
Q 001292 495 NGVLLMADIVLYG--SSQVEQGFPSLIV---RAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFI 566 (1106)
Q Consensus 495 ~~LyaaADVfV~P--S~~EeEGFGlvLL---EAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LL 566 (1106)
..++..||++|.- -.+ -.=++.+ =|.|+|+|.|.-.-..+..-+++-.+..++-..++++..+.|..++
T Consensus 67 ~~li~~aDvVVvrFGekY---KQWNaAfDAg~a~AlgKplI~lh~~~~~HpLKEvda~A~a~~et~~Qvv~iL~Yv~ 140 (141)
T PF11071_consen 67 RTLIEKADVVVVRFGEKY---KQWNAAFDAGYAAALGKPLITLHPEELHHPLKEVDAAALAVAETPEQVVEILRYVL 140 (141)
T ss_pred HHHHhhCCEEEEEechHH---HHHHHHhhHHHHHHcCCCeEEecchhccccHHHHhHhhHhhhCCHHHHHHHHHHHh
Confidence 5789999998853 211 0113333 3689999999987666655554444445555678888888887765
No 193
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=65.80 E-value=37 Score=31.46 Aligned_cols=102 Identities=18% Similarity=0.248 Sum_probs=66.9
Q ss_pred EEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHh---CCCEEe-
Q 001292 458 FLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF---GIPVIT- 531 (1106)
Q Consensus 458 IIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~---G~PVIA- 531 (1106)
+|+.+.+.. ...++.+.+..|+. .|.......+....+.. .|++++..... ..-|..+++.+.. .+|+|+
T Consensus 2 livd~~~~~-~~~l~~~l~~~~~~--~v~~~~~~~~~~~~~~~~~~d~iiid~~~~-~~~~~~~~~~i~~~~~~~~ii~~ 77 (112)
T PF00072_consen 2 LIVDDDPEI-RELLEKLLERAGYE--EVTTASSGEEALELLKKHPPDLIIIDLELP-DGDGLELLEQIRQINPSIPIIVV 77 (112)
T ss_dssp EEEESSHHH-HHHHHHHHHHTTEE--EEEEESSHHHHHHHHHHSTESEEEEESSSS-SSBHHHHHHHHHHHTTTSEEEEE
T ss_pred EEEECCHHH-HHHHHHHHHhCCCC--EEEEECCHHHHHHHhcccCceEEEEEeeec-cccccccccccccccccccEEEe
Confidence 455555543 56666666666663 46666666665555544 57788776554 3556677766544 678875
Q ss_pred cCCC---CchhhhccCCeEEEEcCCCHHHHHHHHH
Q 001292 532 PDFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFS 563 (1106)
Q Consensus 532 SD~g---GI~EiV~Dg~nG~LV~~~D~eeLAeAI~ 563 (1106)
++.. ...+.+..|..|++..|-++++|.++|.
T Consensus 78 t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 78 TDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp ESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 3333 3456677788999999999999998874
No 194
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=63.18 E-value=3.3e+02 Score=33.16 Aligned_cols=94 Identities=16% Similarity=0.211 Sum_probs=57.3
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHH-HhCCCEEecCCC
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAM-TFGIPVITPDFP 535 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAM-A~G~PVIASD~g 535 (1106)
+.|+++.. +..+++++++|.. .-..+++..++..+||+|..+..-.+-.+...+|.. .--...+.-|.+
T Consensus 205 i~IaNRT~----erA~~La~~~~~~------~~~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDia 274 (414)
T COG0373 205 ITIANRTL----ERAEELAKKLGAE------AVALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIA 274 (414)
T ss_pred EEEEcCCH----HHHHHHHHHhCCe------eecHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEec
Confidence 67888876 5578889988722 224579999999999999775432123344444443 333345777887
Q ss_pred CchhhhccC---CeEEEEcCCCHHHHHH
Q 001292 536 IIKEYVAEG---AQVIFFQKDNPEGLSR 560 (1106)
Q Consensus 536 GI~EiV~Dg---~nG~LV~~~D~eeLAe 560 (1106)
..+++-.+- .+-++++.+|.+.+++
T Consensus 275 vPRdie~~v~~l~~v~l~~iDDL~~iv~ 302 (414)
T COG0373 275 VPRDVEPEVGELPNVFLYTIDDLEEIVE 302 (414)
T ss_pred CCCCCCccccCcCCeEEEehhhHHHHHH
Confidence 777644221 2345666555544443
No 195
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=62.81 E-value=20 Score=36.70 Aligned_cols=69 Identities=14% Similarity=0.083 Sum_probs=42.5
Q ss_pred HHHHHHcCeEEEc--cCCCCCCCcHHHHH---HHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHH
Q 001292 495 NGVLLMADIVLYG--SSQVEQGFPSLIVR---AMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFI 566 (1106)
Q Consensus 495 ~~LyaaADVfV~P--S~~EeEGFGlvLLE---AMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LL 566 (1106)
..++..|||+|.- -.+ -.=+..+. |.|+|+|.|.-.-+.+..-+++-.+..+.-..++++..+.+..++
T Consensus 70 ~~li~~aDvvVvrFGekY---KQWNaAfDAg~aaAlgKplI~lh~~~~~HpLKEvdaaA~avaetp~Qvv~iL~Yv~ 143 (144)
T TIGR03646 70 RKLIEKADVVIALFGEKY---KQWNAAFDAGYAAALGKPLIILRPEELIHPLKEVDNKAQAVVETPEQAIETLKYIL 143 (144)
T ss_pred HHHHhhCCEEEEEechHH---HHHHHHhhHHHHHHcCCCeEEecchhccccHHHHhHHHHHHhcCHHHHHHHHHHhh
Confidence 4788999998853 211 01133333 689999999976665554444433344444567777777776654
No 196
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=62.29 E-value=71 Score=33.88 Aligned_cols=114 Identities=11% Similarity=0.122 Sum_probs=69.3
Q ss_pred eEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCC--CCcHHHHHHHHh---C
Q 001292 454 FKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQ--GFPSLIVRAMTF---G 526 (1106)
Q Consensus 454 ikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeE--GFGlvLLEAMA~---G 526 (1106)
++ ++++.+++.. ...++.+.+..+.-. .|.......+....+. ..|++++-....+. ..|..+++.+.. .
T Consensus 4 ~~-Ilivdd~~~~-~~~l~~~L~~~~~~~-~v~~~~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~ 80 (216)
T PRK10840 4 MN-VIIADDHPIV-LFGIRKSLEQIEWVN-VVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPS 80 (216)
T ss_pred eE-EEEECCcHHH-HHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCC
Confidence 35 5667766642 455666665433211 2333344445555544 37998876544311 147777777653 4
Q ss_pred CCEEec-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcc
Q 001292 527 IPVITP-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGK 570 (1106)
Q Consensus 527 ~PVIAS-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpe 570 (1106)
+|||+- .... +...+..|..|++..+.++++|..+|..++....
T Consensus 81 ~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g~~ 128 (216)
T PRK10840 81 LSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKK 128 (216)
T ss_pred CcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCCCe
Confidence 677653 3332 3455777889999999999999999998876543
No 197
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=58.07 E-value=3.7e+02 Score=32.33 Aligned_cols=195 Identities=15% Similarity=0.182 Sum_probs=104.7
Q ss_pred HhccccEEEecCCChhhh---hcCCCCCCEEEeCCCCCCcccccccCcc---hhHHHHHHHcCCCCCcEEEEEEcccCcc
Q 001292 350 VFSRVNVIVFPDYTLPML---YSVLDAGNFFVIPGSPADVWAVEAYSKS---HEKYQLRKENGFLKDEIVVVVVGSSFFY 423 (1106)
Q Consensus 350 ~l~~AD~VIa~S~~~~~~---~~gi~~~KI~VIpN~GVDl~~~e~F~ps---~s~~~LR~~lGL~~d~~VIL~VGRl~~y 423 (1106)
.....|++++.+.....+ ..++.+.++..++-.-.|. .+... .........++++.++.+|++.-.....
T Consensus 145 ~~~~~dy~~~~~~~~~~if~~~f~~~~~~i~~~G~Pr~D~----~~~~~~~~~~~~~~~~~~~~~~~k~vIlyaPTfr~~ 220 (388)
T COG1887 145 VRNHWDYLISPNPESTAIFAEAFNIDKENILETGYPRNDK----LFDEAGKTEDILLIQLALPLPQDKKVILYAPTFRDN 220 (388)
T ss_pred eeeeeeeeeeCChhhHHHHHHHhcccccceeecCcccchh----hhhhccchhhhHHHhhhcCCcccCceEEecCCccCC
Confidence 345777777777555444 3355566666654322332 22221 1112234556777788899998643331
Q ss_pred ccccCC---HHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH
Q 001292 424 NELSWD---YAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM 500 (1106)
Q Consensus 424 ~kg~Kg---~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa 500 (1106)
. +..+ ....++.. ++.+ ...+ .+. .+|+=.||.. .+.+.. .. ...+ .|..+....++..+|..
T Consensus 221 ~-~~~~~~~~~~~~~~~-~~~~----~l~~-~~~--~ii~k~Hp~i-s~~~~~-~~--~~~~-~~~~vs~~~di~dll~~ 286 (388)
T COG1887 221 D-VLIGTQFFNLDIDIE-KLKE----KLGE-NEY--VIIVKPHPLI-SDKIDK-RY--ALDD-FVLDVSDNADINDLLLV 286 (388)
T ss_pred c-cccchhhhhhhhhHH-HHHH----hhcc-CCe--EEEEecChhh-hhhhhh-hh--hccc-eeEecccchhHHHHHhh
Confidence 1 0011 12222111 1221 1111 333 4566666643 111111 11 2232 45555557799999999
Q ss_pred cCeEEEccCCCCCCCcHHHHHHHHhCCCEEec--CCCCc---hhhh---ccCCeEEEEcCCCHHHHHHHHHHHHhCccc
Q 001292 501 ADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP--DFPII---KEYV---AEGAQVIFFQKDNPEGLSRAFSLFISNGKL 571 (1106)
Q Consensus 501 ADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS--D~gGI---~EiV---~Dg~nG~LV~~~D~eeLAeAI~~LLsDpel 571 (1106)
+|++|. -++.++.|+|...+|||.. |.... +..+ ....-|-++ .+..+|.++|.....+++.
T Consensus 287 sDiLIT-------DySSv~fdf~~l~KPiify~~D~~~y~~~rg~~~d~~~~~Pg~~~--~~~~~li~ai~~~~~~~~~ 356 (388)
T COG1887 287 SDILIT-------DYSSVIFDFMLLDKPIIFYTYDLEQYDELRGFYLDYKFEAPGEVV--ETQEELIDAIKPYDEDGNY 356 (388)
T ss_pred hCEEEe-------echHHHHHHHHhcCcEEEEecChHHHHhhhhhhhhHHhcCCcccc--ccHHHHHHHHHhhhcccch
Confidence 999882 4568999999999999986 21111 1111 112234444 3788999999998886664
No 198
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=55.23 E-value=2.4e+02 Score=32.46 Aligned_cols=78 Identities=12% Similarity=0.058 Sum_probs=47.8
Q ss_pred ceeeeecccCCCCCccccccCCCCCCCCCCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCC-CCchHHHHHH
Q 001292 194 SRLKFVPDQVGFGNGLDGLRSTPRFGVRPPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRS-GNSHSLWEQI 272 (1106)
Q Consensus 194 er~gf~~~~~~~~~~~~ha~Sv~r~g~r~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~d-g~~~~i~r~l 272 (1106)
+.+||+|..... +..+|++|++++.-..-......+.+++++.||++.++.... .........
T Consensus 33 ~~LgY~Pn~~Ar---------------~t~~Igvv~p~~~~~f~~~~~~gi~~aa~~~G~~l~i~~~~~~~~~~~q~~~- 96 (343)
T PRK10936 33 TSLQYSPLLKAK---------------KAWKLCALYPHLKDSYWLSVNYGMVEEAKRLGVDLKVLEAGGYYNLAKQQQQ- 96 (343)
T ss_pred cccccccccccC---------------CCeEEEEEecCCCchHHHHHHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHH-
Confidence 677898865321 257899999887655555566677788888999999976532 112222222
Q ss_pred hHHHHHhhccCccEEEEc
Q 001292 273 AGQISILGQEQYSLIDWS 290 (1106)
Q Consensus 273 g~lvkiIr~~~pDiIh~~ 290 (1106)
+..+...++|-|-+.
T Consensus 97 ---i~~l~~~~vdgIIl~ 111 (343)
T PRK10936 97 ---LEQCVAWGADAILLG 111 (343)
T ss_pred ---HHHHHHhCCCEEEEe
Confidence 333444567755443
No 199
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=53.05 E-value=85 Score=31.98 Aligned_cols=109 Identities=14% Similarity=0.128 Sum_probs=65.4
Q ss_pred EEEEcCCCCccHHHHHHHHHHc-CCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec-
Q 001292 457 VFLCGNSTDGYNDALQEVASRL-GLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP- 532 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaekl-GL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS- 532 (1106)
++++.+.+.. ...+++..... +.. .+.......+....+. ..|++++-.... +.-|..+++.+....|||+.
T Consensus 4 ilivd~~~~~-~~~l~~~L~~~~~~~--~~~~~~~~~~~l~~~~~~~~dlvi~d~~~~-~~~g~~~~~~l~~~~~vi~~s 79 (196)
T PRK10360 4 VALIDDHLIV-RSGFAQLLGLEPDLQ--VVAEFGSGREALAGLPGRGVQVCICDISMP-DISGLELLSQLPKGMATIMLS 79 (196)
T ss_pred EEEECCcHHH-HHHHHHHHccCCCcE--EEEEECCHHHHHHHHhcCCCCEEEEeCCCC-CCCHHHHHHHHccCCCEEEEE
Confidence 4566666542 34444444321 111 1222333344444443 368888765442 24577788887777888764
Q ss_pred CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHhCc
Q 001292 533 DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNG 569 (1106)
Q Consensus 533 D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDp 569 (1106)
+... ....+..|..+++..+.+.++|.++|..++...
T Consensus 80 ~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 119 (196)
T PRK10360 80 VHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGG 119 (196)
T ss_pred CCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCC
Confidence 2222 234566678899999999999999999988653
No 200
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=52.50 E-value=41 Score=34.90 Aligned_cols=82 Identities=15% Similarity=0.131 Sum_probs=48.3
Q ss_pred HHHHhhccCccEEEE-ccccHHH-HHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhc
Q 001292 275 QISILGQEQYSLIDW-SIFDGII-ADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFS 352 (1106)
Q Consensus 275 lvkiIr~~~pDiIh~-~~~~~i~-v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~ 352 (1106)
+.+++++.+||+|-+ |.+...+ +..+..+... .++|++..+-+......... ..
T Consensus 81 l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~--------~~~p~~tvvTD~~~~H~~W~----------------~~ 136 (169)
T PF06925_consen 81 LIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRL--------PNIPVVTVVTDFDTVHPFWI----------------HP 136 (169)
T ss_pred HHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcc--------cCCcEEEEEcCCCCCCcCee----------------cC
Confidence 567778889996655 5544555 5556554421 36787655445321111111 24
Q ss_pred cccEEEecCCChhhh--hcCCCCCCEEEeC
Q 001292 353 RVNVIVFPDYTLPML--YSVLDAGNFFVIP 380 (1106)
Q Consensus 353 ~AD~VIa~S~~~~~~--~~gi~~~KI~VIp 380 (1106)
.+|..++.+...... ..|++++++.+++
T Consensus 137 ~~D~y~Vase~~~~~l~~~Gi~~~~I~vtG 166 (169)
T PF06925_consen 137 GVDRYFVASEEVKEELIERGIPPERIHVTG 166 (169)
T ss_pred CCCEEEECCHHHHHHHHHcCCChhHEEEeC
Confidence 677777777655444 5688888887765
No 201
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=49.59 E-value=1.2e+02 Score=37.25 Aligned_cols=71 Identities=13% Similarity=0.107 Sum_probs=49.7
Q ss_pred hhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhC-CCEEecCCCC--chhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 492 GDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFG-IPVITPDFPI--IKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 492 eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G-~PVIASD~gG--I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
....+.+..|-.++.|.-.+ .....++||+..| +|||.++.-. ..+.++-.+.++.++..+...+ |.+.|.
T Consensus 335 ~~y~~~m~~S~FCL~p~Gd~--~ts~R~fdai~~gCvPViisd~~~lpf~~~~d~~~fSV~v~~~~v~~~---~~~iL~ 408 (464)
T KOG1021|consen 335 LNYMEGMQDSKFCLCPPGDT--PTSPRLFDAIVSGCVPVIISDGIQLPFGDVLDWTEFSVFVPEKDVPEL---IKNILL 408 (464)
T ss_pred chHHHHhhcCeEEECCCCCC--cccHhHHHHHHhCCccEEEcCCcccCcCCCccceEEEEEEEHHHhhhH---HHHHHH
Confidence 46889999999999998775 6777999999999 8999997633 3345544456666653333333 444444
No 202
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=49.02 E-value=2.1e+02 Score=31.90 Aligned_cols=53 Identities=11% Similarity=0.073 Sum_probs=32.3
Q ss_pred HHHHHHhCCCEEecCCCCchhhh-cc-CCeEEEEcCCCHHHHHHHHHHHHhCccc
Q 001292 519 IVRAMTFGIPVITPDFPIIKEYV-AE-GAQVIFFQKDNPEGLSRAFSLFISNGKL 571 (1106)
Q Consensus 519 LLEAMA~G~PVIASD~gGI~EiV-~D-g~nG~LV~~~D~eeLAeAI~~LLsDpel 571 (1106)
+|+-...-.|||..+-|+..--+ .+ ....|-+++++--+||.+|.--++....
T Consensus 178 ~L~d~l~ssPii~ge~g~a~~~~~a~g~~f~fgvdp~~DPELAlALRlSMEEer~ 232 (259)
T KOG2884|consen 178 LLSDALLSSPIIQGEDGGAAAGLGANGMDFEFGVDPEDDPELALALRLSMEEERA 232 (259)
T ss_pred cHHHHhhcCceeccCcccccccccccccccccCCCcccCHHHHHHHHhhHHHHHH
Confidence 66777778999999755443323 11 1122334555555799999877765543
No 203
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=48.50 E-value=4.5e+02 Score=29.76 Aligned_cols=86 Identities=22% Similarity=0.227 Sum_probs=51.6
Q ss_pred HHHHHcCCCCCcEEEc-CCh-hhH-HHHHHH--cCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeE
Q 001292 473 EVASRLGLLEHSVRHY-GFN-GDV-NGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQV 547 (1106)
Q Consensus 473 eLaeklGL~d~rV~fl-G~~-eDL-~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG 547 (1106)
+.+.++|++..++... |+. .++ ..++.. +|++|.--+-...|+.-++--|+.+|+|||+-+-+....- +
T Consensus 165 ~~~~~~G~~~~~iia~~gPfs~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~~~~------~ 238 (256)
T TIGR00715 165 AQALKLGFPSDRIIAMRGPFSEELEKALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARPQTIPG------V 238 (256)
T ss_pred HHHHHcCCChhcEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCCCCC------C
Confidence 3677889976455444 532 333 455554 5566643222111455678888999999999887754211 1
Q ss_pred EEEcCCCHHHHHHHHHHHH
Q 001292 548 IFFQKDNPEGLSRAFSLFI 566 (1106)
Q Consensus 548 ~LV~~~D~eeLAeAI~~LL 566 (1106)
..+ .+.+++.+.+.+++
T Consensus 239 ~~~--~~~~el~~~l~~~~ 255 (256)
T TIGR00715 239 AIF--DDISQLNQFVARLL 255 (256)
T ss_pred ccC--CCHHHHHHHHHHhc
Confidence 112 57888888877654
No 204
>PRK13435 response regulator; Provisional
Probab=45.19 E-value=2.8e+02 Score=27.02 Aligned_cols=108 Identities=16% Similarity=0.118 Sum_probs=60.6
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHHh--CCCEEec
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMTF--GIPVITP 532 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA~--G~PVIAS 532 (1106)
++++.+.+.. ...+....+..|.. .+.......+...++. ..|++++-.......-|..+++-+.. .+|+|+-
T Consensus 8 iliid~~~~~-~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~dliivd~~~~~~~~~~~~~~~l~~~~~~pii~l 84 (145)
T PRK13435 8 VLIVEDEALI-ALELEKLVEEAGHE--VVGIAMSSEQAIALGRRRQPDVALVDVHLADGPTGVEVARRLSADGGVEVVFM 84 (145)
T ss_pred EEEEcCcHHH-HHHHHHHHHhcCCe--EEEeeCCHHHHHHHhhhcCCCEEEEeeecCCCCcHHHHHHHHHhCCCCCEEEE
Confidence 4555555443 35566666655543 2324444445544443 37888875432100235555555432 5777764
Q ss_pred -CCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 533 -DFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 533 -D~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
........+..|..+++..+-+.++|.+.|.+++.
T Consensus 85 s~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 120 (145)
T PRK13435 85 TGNPERVPHDFAGALGVIAKPYSPRGVARALSYLSA 120 (145)
T ss_pred eCCHHHHHHHhcCcceeEeCCCCHHHHHHHHHHHHh
Confidence 22222334445677888888899999888877754
No 205
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=42.63 E-value=2e+02 Score=35.41 Aligned_cols=110 Identities=15% Similarity=0.104 Sum_probs=75.7
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHc--CeEEEccCCCCCCCcHHHHHHHHh---CCCEEe
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMA--DIVLYGSSQVEQGFPSLIVRAMTF---GIPVIT 531 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaA--DVfV~PS~~EeEGFGlvLLEAMA~---G~PVIA 531 (1106)
+++|-+.+.- ...+.+..+..|+ .|.......+....+... |+++.--..- +.-|+.+++.+.. ++|||.
T Consensus 7 iLvVDDd~~i-r~~l~~~L~~~G~---~v~~a~~~~~al~~i~~~~~~lvl~Di~mp-~~~Gl~ll~~i~~~~~~~pVI~ 81 (464)
T COG2204 7 ILVVDDDPDI-RELLEQALELAGY---EVVTAESAEEALEALSESPFDLVLLDIRMP-GMDGLELLKEIKSRDPDLPVIV 81 (464)
T ss_pred EEEEeCCHHH-HHHHHHHHHHcCC---eEEEeCCHHHHHHHHhcCCCCEEEEecCCC-CCchHHHHHHHHhhCCCCCEEE
Confidence 3555555432 3556666666665 366666666666666665 6666433332 3558899888776 699987
Q ss_pred -cCCCCc---hhhhccCCeEEEEcCCCHHHHHHHHHHHHhCccc
Q 001292 532 -PDFPII---KEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKL 571 (1106)
Q Consensus 532 -SD~gGI---~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpel 571 (1106)
|..+.+ .+-+..|...|+..|-+++.|...+.+.++...+
T Consensus 82 ~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~ 125 (464)
T COG2204 82 MTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELREL 125 (464)
T ss_pred EeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhhh
Confidence 455554 4666778888999999999999999999987665
No 206
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=40.48 E-value=2.4e+02 Score=29.10 Aligned_cols=106 Identities=12% Similarity=0.085 Sum_probs=64.4
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHHh-----CCCE
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMTF-----GIPV 529 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA~-----G~PV 529 (1106)
++++.+.+.. ...+....+..|. .|.......+....+. ..|++++-.... ..-|..+++.+.. .+||
T Consensus 5 ilivdd~~~~-~~~l~~~L~~~~~---~v~~~~~~~~~~~~~~~~~~d~vi~d~~~~-~~~g~~~~~~l~~~~~~~~~~i 79 (226)
T TIGR02154 5 ILVVEDEPAI-RELIAYNLEKAGY---DVVEAGDGDEALTLINERGPDLILLDWMLP-GTSGIELCRRLRRRPETRAIPI 79 (226)
T ss_pred EEEEeCCHHH-HHHHHHHHHHCCC---EEEEEcCHHHHHHHHHhcCCCEEEEECCCC-CCcHHHHHHHHHccccCCCCCE
Confidence 4566665542 4566666665443 3444444445444443 368888765543 2456777777652 5787
Q ss_pred Eec-CCC---CchhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 530 ITP-DFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 530 IAS-D~g---GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
|+- ... ...+.+..|..+++..+.+.++|..+|..++.
T Consensus 80 i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 121 (226)
T TIGR02154 80 IMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLR 121 (226)
T ss_pred EEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhc
Confidence 763 222 23345666778899988889988888877654
No 207
>PRK09483 response regulator; Provisional
Probab=38.55 E-value=2.5e+02 Score=29.05 Aligned_cols=109 Identities=14% Similarity=0.095 Sum_probs=64.2
Q ss_pred EEEEcCCCCccHHHHHHHHHHc-CCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHh---CCCEE
Q 001292 457 VFLCGNSTDGYNDALQEVASRL-GLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF---GIPVI 530 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaekl-GL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~---G~PVI 530 (1106)
++|+.+.+.. ...++...+.. ++. .|.......+....+.. .|++++-.... +..|..+++.+.. .+|||
T Consensus 4 ilivd~~~~~-~~~l~~~L~~~~~~~--~v~~~~~~~~~~~~~~~~~~dlvi~d~~~~-~~~g~~~~~~l~~~~~~~~ii 79 (217)
T PRK09483 4 VLLVDDHELV-RAGIRRILEDIKGIK--VVGEACCGEDAVKWCRTNAVDVVLMDMNMP-GIGGLEATRKILRYTPDVKII 79 (217)
T ss_pred EEEECCcHHH-HHHHHHHHccCCCCE--EEEEeCCHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHCCCCeEE
Confidence 4566665532 34455555432 221 12233344444444433 58888765443 3457777776532 47777
Q ss_pred ecCC-C---CchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCc
Q 001292 531 TPDF-P---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNG 569 (1106)
Q Consensus 531 ASD~-g---GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDp 569 (1106)
+-.. . .....+..|..|++..+.+.+++..+|..++...
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~ 122 (217)
T PRK09483 80 MLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQ 122 (217)
T ss_pred EEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 6422 2 2335566788999999899999999999887654
No 208
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=37.72 E-value=2e+02 Score=30.80 Aligned_cols=117 Identities=16% Similarity=0.166 Sum_probs=61.3
Q ss_pred CEEEEEeCCCCCChhHHHHHHHHHHHHHC-CCEEEEEEcCCCCchHHHHHHhHHH----HHhhccCccEEEEccccH-HH
Q 001292 223 PRIGLILGNMAKDSRSLLLITVVKNLQKL-GYVFKIYAVRSGNSHSLWEQIAGQI----SILGQEQYSLIDWSIFDG-II 296 (1106)
Q Consensus 223 ~RIalVlg~L~~gGesl~vv~LakaLqe~-GyeVtV~t~~dg~~~~i~r~lg~lv----kiIr~~~pDiIh~~~~~~-i~ 296 (1106)
++|+++.+-...... .+++.|.+. .++++++|+... .--|+.-|..+ ++.....+|++-...... .-
T Consensus 1 M~ILlle~y~ggSHk-----~~~~~L~~~~~~~~~lltLP~r--~w~WRmRg~AL~~a~~~~~~~~~dll~aTsmldLa~ 73 (168)
T PF12038_consen 1 MRILLLEPYYGGSHK-----QWADGLAAHSEHEWTLLTLPAR--KWHWRMRGAALYFAQQIPLSHSYDLLFATSMLDLAT 73 (168)
T ss_pred CeEEEEccccccCHH-----HHHHHHHHhccCCEEEEEcCCC--ccccccCCCHHHHhhccccccCCCEEEeeccccHHH
Confidence 467777665554432 344444444 589999998653 23344333322 233345677776654332 22
Q ss_pred HHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccc-------cchhhhhhhHHhHHHHHHHHhccccEEEecCCCh
Q 001292 297 ADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLAN-------RLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTL 364 (1106)
Q Consensus 297 v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~-------r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~~~ 364 (1106)
+..+.+. ..++|.|.-+|+.-+.. +...|.. .. +..++ .||.|++.|..-
T Consensus 74 l~gL~p~----------l~~~p~ilYFHENQl~YP~~~~~~rd~~~~~---~n----i~saL-aAD~v~FNS~~n 130 (168)
T PF12038_consen 74 LRGLRPD----------LANVPKILYFHENQLAYPVSPGQERDFQYGM---NN----IYSAL-AADRVVFNSAFN 130 (168)
T ss_pred HHhhccC----------CCCCCEEEEEecCcccCCCCCCccccccHHH---HH----HHHHH-hceeeeecchhh
Confidence 3333331 26789999999943321 1112111 22 22334 788888887543
No 209
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=36.60 E-value=49 Score=32.44 Aligned_cols=31 Identities=6% Similarity=0.158 Sum_probs=24.4
Q ss_pred CCCChhHHHHHHHHHHHHHCCCEEEEEEcCC
Q 001292 232 MAKDSRSLLLITVVKNLQKLGYVFKIYAVRS 262 (1106)
Q Consensus 232 L~~gGesl~vv~LakaLqe~GyeVtV~t~~d 262 (1106)
....|-....+.++++|+++||+|.+.+..+
T Consensus 6 ~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~ 36 (139)
T PF03033_consen 6 GGTRGHVYPFLALARALRRRGHEVRLATPPD 36 (139)
T ss_dssp ESSHHHHHHHHHHHHHHHHTT-EEEEEETGG
T ss_pred cCChhHHHHHHHHHHHHhccCCeEEEeeccc
Confidence 3445777788999999999999999877654
No 210
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=35.67 E-value=1.6e+02 Score=28.86 Aligned_cols=78 Identities=4% Similarity=0.169 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEcc
Q 001292 429 DYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGS 508 (1106)
Q Consensus 429 g~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS 508 (1106)
|.+.++++++. ..++++|++.+.++.....+..+++..+++ .+.+ +..+++...+....+.++.-
T Consensus 21 G~~~v~~aik~------------gk~~lVI~A~D~s~~~kkki~~~~~~~~vp--~~~~-~t~~eLg~a~Gk~~~~~iai 85 (104)
T PRK05583 21 GYNKCEEAIKK------------KKVYLIIISNDISENSKNKFKNYCNKYNIP--YIEG-YSKEELGNAIGRDEIKILGV 85 (104)
T ss_pred cHHHHHHHHHc------------CCceEEEEeCCCCHhHHHHHHHHHHHcCCC--EEEe-cCHHHHHHHhCCCCeEEEEE
Confidence 45566666621 345667888887776678888888877776 3444 88899999999877655553
Q ss_pred CCCCCCCcHHHHHHH
Q 001292 509 SQVEQGFPSLIVRAM 523 (1106)
Q Consensus 509 ~~EeEGFGlvLLEAM 523 (1106)
. + ++|.-.+++.+
T Consensus 86 ~-d-~g~a~~l~~~~ 98 (104)
T PRK05583 86 K-D-KNMAKKLLKLW 98 (104)
T ss_pred e-C-hHHHHHHHHHH
Confidence 3 2 47777777754
No 211
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=35.42 E-value=3.1e+02 Score=28.25 Aligned_cols=105 Identities=12% Similarity=0.058 Sum_probs=61.3
Q ss_pred EEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHH---hCCCEEec
Q 001292 458 FLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMT---FGIPVITP 532 (1106)
Q Consensus 458 IIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA---~G~PVIAS 532 (1106)
+++.+.+.. ...+.......|. .|.......+....+. ..|++++-.... ..-|..+++.+. ...|||+.
T Consensus 4 livdd~~~~-~~~l~~~L~~~~~---~v~~~~~~~~~~~~~~~~~~d~illd~~~~-~~~g~~~~~~l~~~~~~~pii~l 78 (222)
T PRK10643 4 LIVEDDTLL-LQGLILALQTEGY---ACDCASTAREAEALLESGHYSLVVLDLGLP-DEDGLHLLRRWRQKKYTLPVLIL 78 (222)
T ss_pred EEEeCCHHH-HHHHHHHHHHCCC---EEEEeCCHHHHHHHHHhCCCCEEEEECCCC-CCCHHHHHHHHHhcCCCCcEEEE
Confidence 455554432 4556666665554 2444444444444443 368888764442 244666666554 35787764
Q ss_pred -CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 533 -DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 533 -D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
.... ..+.+..|..+++..+.+.++|...+..++.
T Consensus 79 s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 117 (222)
T PRK10643 79 TARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIR 117 (222)
T ss_pred ECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 2222 2344566778899988889888888776653
No 212
>CHL00148 orf27 Ycf27; Reviewed
Probab=35.03 E-value=4.5e+02 Score=27.51 Aligned_cols=109 Identities=12% Similarity=0.070 Sum_probs=63.6
Q ss_pred CeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHHh--CCC
Q 001292 453 SFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMTF--GIP 528 (1106)
Q Consensus 453 dikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA~--G~P 528 (1106)
..+ ++++.+.+.. ...+.......+. .|.......+....+. ..|++++.-... ...|..+++.+.. .+|
T Consensus 6 ~~~-ilivdd~~~~-~~~l~~~l~~~~~---~v~~~~~~~~~l~~~~~~~~d~illd~~~~-~~~g~~~~~~l~~~~~~~ 79 (240)
T CHL00148 6 KEK-ILVVDDEAYI-RKILETRLSIIGY---EVITASDGEEALKLFRKEQPDLVILDVMMP-KLDGYGVCQEIRKESDVP 79 (240)
T ss_pred Cce-EEEEeCCHHH-HHHHHHHHHHCCC---EEEEeCCHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHhcCCCc
Confidence 345 4666666542 4556666665543 3444444444444443 368888754442 2446666665543 578
Q ss_pred EEec-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 529 VITP-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 529 VIAS-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
||+- .... ..+.+..|..+++..+.+.++|..+|..++.
T Consensus 80 ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~ 122 (240)
T CHL00148 80 IIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLR 122 (240)
T ss_pred EEEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 7754 2222 2345566778899988899888888776653
No 213
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=34.64 E-value=6.4e+02 Score=29.94 Aligned_cols=131 Identities=15% Similarity=0.148 Sum_probs=68.2
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCCh------hhHH----HHHHHcCeEEEccCCCCCCCcHHHHHHHHhC
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFN------GDVN----GVLLMADIVLYGSSQVEQGFPSLIVRAMTFG 526 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~------eDL~----~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G 526 (1106)
++++|.|... ....+...+.|.. +|.+.... +++. .+...+||+|..|..-+-..|+...|.+.--
T Consensus 177 vLvIGaGem~--~l~a~~L~~~g~~--~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~ 252 (338)
T PRK00676 177 LLFIGYSEIN--RKVAYYLQRQGYS--RITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSWESLADI 252 (338)
T ss_pred EEEEcccHHH--HHHHHHHHHcCCC--EEEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeHHHHhhc
Confidence 6788998854 4444444556765 57776622 3333 5677999999863210125577667765532
Q ss_pred CCEEecCCCCchhh--hccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 001292 527 IPVITPDFPIIKEY--VAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILEN 604 (1106)
Q Consensus 527 ~PVIASD~gGI~Ei--V~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLyes 604 (1106)
.+-+.-|....+++ +....+-.+++ .++|.+.+.+-+. . +++....+...+ ++.+.+|.+.|++
T Consensus 253 ~~r~~iDLAvPRdId~v~~~~~v~Ly~---iDdL~~i~~~n~~---~---R~~~~~~ae~iI-----~~~~~~~~~~~~~ 318 (338)
T PRK00676 253 PDRIVFDFNVPRTFPWSETPFPHRYLD---MDFISEWVQKHLQ---C---RKEVNNKHKLSL-----REAAYKQWESYEK 318 (338)
T ss_pred cCcEEEEecCCCCCccccccCCcEEEE---hHHHHHHHHHHHH---H---HHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 22345565554443 22223344664 5555554443322 1 233333443333 3455666666665
Q ss_pred H
Q 001292 605 V 605 (1106)
Q Consensus 605 l 605 (1106)
-
T Consensus 319 ~ 319 (338)
T PRK00676 319 K 319 (338)
T ss_pred H
Confidence 4
No 214
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=34.42 E-value=1e+02 Score=36.22 Aligned_cols=38 Identities=18% Similarity=0.402 Sum_probs=32.5
Q ss_pred EEeCCCCCCh--hHHHHHHHHHHHHHCCCEEEEEEcCCCC
Q 001292 227 LILGNMAKDS--RSLLLITVVKNLQKLGYVFKIYAVRSGN 264 (1106)
Q Consensus 227 lVlg~L~~gG--esl~vv~LakaLqe~GyeVtV~t~~dg~ 264 (1106)
+++||+.+|| -+-++..|++.|+++|+.+.|++-+.+.
T Consensus 59 IsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~ 98 (338)
T PRK01906 59 VVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVSRGYGA 98 (338)
T ss_pred EEECCccCCCCChHHHHHHHHHHHHHcCCceEEEecCCCC
Confidence 6789998865 5778999999999999999999987654
No 215
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=33.76 E-value=3.5e+02 Score=28.29 Aligned_cols=106 Identities=12% Similarity=0.065 Sum_probs=62.1
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHH-----hCCCE
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMT-----FGIPV 529 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA-----~G~PV 529 (1106)
++++.+.+.. ...+....+..|.. |.......+....+. ..|++++-.... ..-|..+++.+. ..+||
T Consensus 5 Ilivdd~~~~-~~~l~~~L~~~g~~---v~~~~~~~~~~~~~~~~~~dlvild~~l~-~~~g~~~~~~l~~~~~~~~~pv 79 (229)
T PRK10161 5 ILVVEDEAPI-REMVCFVLEQNGFQ---PVEAEDYDSAVNQLNEPWPDLILLDWMLP-GGSGIQFIKHLKRESMTRDIPV 79 (229)
T ss_pred EEEEcCCHHH-HHHHHHHHHHCCCE---EEEECCHHHHHHHHhccCCCEEEEeCCCC-CCCHHHHHHHHHhccccCCCCE
Confidence 4566665432 45566666555543 444444444444443 368888765442 234666666664 35787
Q ss_pred Eec-CCC---CchhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 530 ITP-DFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 530 IAS-D~g---GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
|.- ... ...+.+..|..+++..+.+.++|...|..++.
T Consensus 80 i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~ 121 (229)
T PRK10161 80 VMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 (229)
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHh
Confidence 754 322 23345666788999988888888888876643
No 216
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=33.65 E-value=3.9e+02 Score=28.22 Aligned_cols=106 Identities=13% Similarity=0.079 Sum_probs=64.9
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHH---hCCCEEe
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMT---FGIPVIT 531 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA---~G~PVIA 531 (1106)
++++.+.+.. ...+....+..|. .|.......+....+. ..|++++-.... ..-|..+++.+. ..+|||+
T Consensus 8 iLiv~d~~~~-~~~l~~~L~~~g~---~v~~~~~~~~~~~~~~~~~~dlvild~~l~-~~~g~~~~~~lr~~~~~~pii~ 82 (239)
T PRK09468 8 ILVVDDDMRL-RALLERYLTEQGF---QVRSAANAEQMDRLLTRESFHLMVLDLMLP-GEDGLSICRRLRSQNNPTPIIM 82 (239)
T ss_pred EEEEcCCHHH-HHHHHHHHHHCCC---EEEEECCHHHHHHHHhcCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCCCCEEE
Confidence 4566665542 4566666665554 3544454455555554 368888765443 245667776664 3578887
Q ss_pred cCC-CC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 532 PDF-PI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 532 SD~-gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
-.. .. ....+..|..+++..|-+.++|...|..++.
T Consensus 83 ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~ 122 (239)
T PRK09468 83 LTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLR 122 (239)
T ss_pred EECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 522 22 2234556777888888889888888877664
No 217
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=33.50 E-value=4e+02 Score=27.37 Aligned_cols=106 Identities=15% Similarity=0.073 Sum_probs=61.9
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHHh---CCCEEe
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMTF---GIPVIT 531 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA~---G~PVIA 531 (1106)
++++.+.+.. ...+....+..|. .|.......+....+. ..|++++..... ..-|..+++.+.. ..|+|.
T Consensus 3 ilivdd~~~~-~~~l~~~L~~~~~---~v~~~~~~~~~~~~~~~~~~dlvild~~l~-~~~g~~~~~~i~~~~~~~~ii~ 77 (219)
T PRK10336 3 ILLIEDDMLI-GDGIKTGLSKMGF---SVDWFTQGRQGKEALYSAPYDAVILDLTLP-GMDGRDILREWREKGQREPVLI 77 (219)
T ss_pred EEEEcCCHHH-HHHHHHHHHHCCC---EEEEeCCHHHHHHHHhhCCCCEEEEECCCC-CCCHHHHHHHHHhcCCCCcEEE
Confidence 3455555432 4555665554443 2444343333333332 368888765443 2446777776653 467776
Q ss_pred c-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 532 P-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 532 S-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
- .... ....+..|..+++..+.+.++|..+|..++.
T Consensus 78 lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (219)
T PRK10336 78 LTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR 117 (219)
T ss_pred EECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHh
Confidence 4 2222 2345566778899998999999888877654
No 218
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=32.87 E-value=2.1e+02 Score=34.33 Aligned_cols=91 Identities=15% Similarity=0.267 Sum_probs=57.6
Q ss_pred CcHHHHHHHHhCCCEEecCCC---CchhhhccCCeEEEEcC-CCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhc
Q 001292 515 FPSLIVRAMTFGIPVITPDFP---IIKEYVAEGAQVIFFQK-DNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNML 590 (1106)
Q Consensus 515 FGlvLLEAMA~G~PVIASD~g---GI~EiV~Dg~nG~LV~~-~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~f 590 (1106)
++..+-=-|+||-.|+..+.. -..+.+....+=+=+.. +|-.+|.++|..+.++++. +++||++|++++.++.
T Consensus 226 ~S~RlkylL~c~SvVl~~~~~~~e~f~~~L~P~vHYVPV~~~~d~sdL~~~v~w~~~~~~~---A~~IA~~g~~f~~~~L 302 (395)
T PF05686_consen 226 WSGRLKYLLACNSVVLKVKSPYYEFFYRALKPWVHYVPVKRDDDLSDLEEKVEWLNAHDDE---AQRIAENGQRFAREYL 302 (395)
T ss_pred eehhHHHHHcCCceEEEeCCcHHHHHHhhhcccccEEEeccccchhhHHHHhhhcccChHH---HHHHHHHHHHHHHHHh
Confidence 334444447777666664322 12233444444333332 3688999999999988887 8999999999999988
Q ss_pred HHHHHH-HHHHHH---HHHhcC
Q 001292 591 ALDCVT-RYARIL---ENVLNF 608 (1106)
Q Consensus 591 see~v~-~Y~eLy---eslLk~ 608 (1106)
..+.+. -+..++ .+++++
T Consensus 303 ~~~~~~~Y~~~LL~eYa~l~~~ 324 (395)
T PF05686_consen 303 TMEDVYCYWRRLLLEYAKLLRF 324 (395)
T ss_pred hhhHHHHHHHHHHHHHHHHhCC
Confidence 866655 334444 445554
No 219
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=32.59 E-value=3.9e+02 Score=32.13 Aligned_cols=108 Identities=14% Similarity=0.117 Sum_probs=67.7
Q ss_pred HHHHHHHcCCC---CCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHH
Q 001292 398 KYQLRKENGFL---KDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEV 474 (1106)
Q Consensus 398 ~~~LR~~lGL~---~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeL 474 (1106)
+..+..++|++ ++..+|...+ |... -+..++++++. . ...+ .+++..|.-. +.++++
T Consensus 168 ~~~~~~~lg~~~~~~~~~~vslF~----Ye~~--~l~~ll~~~~~-------~---~~pv--~llvp~g~~~--~~~~~~ 227 (374)
T PF10093_consen 168 RAAFLRRLGLPEPEPGALRVSLFC----YENA--ALASLLDAWAA-------S---PKPV--HLLVPEGRAL--NSLAAW 227 (374)
T ss_pred HHHHHHHcCCCCCCCCCeEEEEEe----CCch--HHHHHHHHHhc-------C---CCCe--EEEecCCccH--HHHHHH
Confidence 45667788885 5666777776 6543 35555555531 1 1233 3455665543 555444
Q ss_pred HHHcCC--------CCCcEEEcC--ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec
Q 001292 475 ASRLGL--------LEHSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP 532 (1106)
Q Consensus 475 aeklGL--------~d~rV~flG--~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS 532 (1106)
.....+ ..-.|+++. ++++...+|..||+-++=+. =+++-|.-.|+|-|=.
T Consensus 228 ~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~NfVRGE-------DSfVRAqwAgkPFvWh 288 (374)
T PF10093_consen 228 LGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACDFNFVRGE-------DSFVRAQWAGKPFVWH 288 (374)
T ss_pred hccccccCccccccCCeEEEECCCCCHHHHHHHHHhCccceEecc-------hHHHHHHHhCCCceEe
Confidence 431011 112467777 45889999999999887653 4689999999999965
No 220
>PF04609 MCR_C: Methyl-coenzyme M reductase operon protein C; InterPro: IPR007687 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein C.; GO: 0003824 catalytic activity, 0015948 methanogenesis
Probab=32.12 E-value=1.4e+02 Score=34.02 Aligned_cols=97 Identities=9% Similarity=0.129 Sum_probs=66.8
Q ss_pred CCCCCCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHHHHHhHHHHHhhccCccEEEEccccHHHH
Q 001292 218 FGVRPPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLWEQIAGQISILGQEQYSLIDWSIFDGIIA 297 (1106)
Q Consensus 218 ~g~r~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r~lg~lvkiIr~~~pDiIh~~~~~~i~v 297 (1106)
.++..+-|+.|.+++....-.-.+-+++.+|++.|.++.++.+..|.....+.....-...+.+++..++|.-++...+.
T Consensus 66 ~Pl~g~eV~vVamS~gr~Hl~~pvCdIt~~LRr~G~~tn~i~L~~G~G~~~~gl~~~E~~~I~~Hd~AV~~~Gn~~~~I~ 145 (268)
T PF04609_consen 66 APLAGTEVAVVAMSPGRRHLPKPVCDITEYLRRAGAKTNMIGLARGSGGRIFGLTPKEIEQINEHDLAVFHLGNFKSCII 145 (268)
T ss_pred ccCCCCcEEEEeCCcccccCCCcHHHHHHHHHHcCCccceEEEeccCCCCccCCCHHHHHHHhhcCEEEEEeCCHHHHHH
Confidence 46678889999999999888888999999999999998887775433222211111135567777888999888777666
Q ss_pred HHHHHHHhhhhcccCCCCCCcEEEE
Q 001292 298 DSLEAKEAISSLMQEPFHSIPLVWI 322 (1106)
Q Consensus 298 ~~La~k~~idII~te~~~gIPVI~t 322 (1106)
........ ...+|+|.+
T Consensus 146 ~K~~~ll~--------~i~iPiVv~ 162 (268)
T PF04609_consen 146 YKKRHLLR--------GIDIPIVVC 162 (268)
T ss_pred HHHHHHHh--------hcCCcEEEe
Confidence 53333211 246887666
No 221
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=31.99 E-value=6.8e+02 Score=28.36 Aligned_cols=50 Identities=22% Similarity=0.184 Sum_probs=34.5
Q ss_pred CCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec-CCCCchhhh
Q 001292 480 LLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP-DFPIIKEYV 541 (1106)
Q Consensus 480 L~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS-D~gGI~EiV 541 (1106)
+++ .+.|...... |++|+-...| --.+++||.-+++|+|+- |.-..++++
T Consensus 162 ~pd-~~~f~~t~~~--------D~vvvln~~e---~~sAilEA~K~~IPTIgIVDtN~~P~li 212 (251)
T KOG0832|consen 162 LPD-ALCFLPTLTP--------DLVVVLNPEE---NHSAILEAAKMAIPTIGIVDTNCNPELI 212 (251)
T ss_pred CCc-ceeecccCCc--------ceeEecCccc---ccHHHHHHHHhCCCeEEEecCCCCccce
Confidence 454 5666664322 8888776654 257899999999999985 544456666
No 222
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=31.78 E-value=3.9e+02 Score=28.93 Aligned_cols=107 Identities=10% Similarity=0.088 Sum_probs=61.6
Q ss_pred EEEEcCCCCccHHHHHHHHHHc-CCCCCcEEEcCChhhHHHHHH----HcCeEEEccCCCCCCCcHHHHHHHHh---CCC
Q 001292 457 VFLCGNSTDGYNDALQEVASRL-GLLEHSVRHYGFNGDVNGVLL----MADIVLYGSSQVEQGFPSLIVRAMTF---GIP 528 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaekl-GL~d~rV~flG~~eDL~~Lya----aADVfV~PS~~EeEGFGlvLLEAMA~---G~P 528 (1106)
++|+.+++.. ...+..+.... +.. .+.......+....+. ..|++++--... +.-|..+++.+.- ++|
T Consensus 4 VLivdd~~~~-~~~l~~~L~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p-~~~G~eli~~l~~~~~~~~ 79 (239)
T PRK10430 4 VLIVDDDAMV-AELNRRYVAQIPGFQ--CCGTASTLEQAKEIIFNSDTPIDLILLDIYMQ-QENGLDLLPVLHEAGCKSD 79 (239)
T ss_pred EEEEcCCHHH-HHHHHHHHHhCCCce--EEEEeCCHHHHHHHHHhcCCCCCEEEEecCCC-CCCcHHHHHHHHhhCCCCC
Confidence 4556666542 34455555432 221 1222233344444442 368888754432 2346677776643 567
Q ss_pred EEec-CCC---CchhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 529 VITP-DFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 529 VIAS-D~g---GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
||+- ... ...+.+..|..|++..+.+.++|.++|..+..
T Consensus 80 vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~ 122 (239)
T PRK10430 80 VIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 (239)
T ss_pred EEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 7654 222 23455667889999999999999999987653
No 223
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=31.64 E-value=4e+02 Score=31.88 Aligned_cols=136 Identities=14% Similarity=0.118 Sum_probs=93.4
Q ss_pred EEEEEEcCCCCccHHHHHHHHHHcCC-CCCcEEEcCChhhHHHHHHH-cCeEEEccCCCCCCCcHHHHHHHHhCCCEEec
Q 001292 455 KFVFLCGNSTDGYNDALQEVASRLGL-LEHSVRHYGFNGDVNGVLLM-ADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP 532 (1106)
Q Consensus 455 kfLIIVG~GperY~eeLkeLaeklGL-~d~rV~flG~~eDL~~Lyaa-ADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS 532 (1106)
.++.++-.-..+....+..++..+.+ .++...|.|.. ++..+++. .|++| ...+| .+.-..-.||+--|=|.|-
T Consensus 224 ~~~~V~Nt~~~ke~~~F~~f~~~ldlvr~gkasfegR~-~~p~fla~~tD~Vv-SHqWe-N~lNYlY~daLyggYPLVH- 299 (364)
T PF10933_consen 224 EHVYVTNTYHLKEHPTFVNFANSLDLVRDGKASFEGRF-DFPDFLAQHTDAVV-SHQWE-NPLNYLYYDALYGGYPLVH- 299 (364)
T ss_pred ceEEEecchhhhcCHHHHHHHHhhHHhhcCeeEEeeec-ChHHHHHhCCCEEE-ecccc-chhhHHHHHHHhcCCCccc-
Confidence 34566655333335777788877766 44577788854 45555544 67766 44665 5777788999999999886
Q ss_pred CCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcH--HHHHHHHHHHH
Q 001292 533 DFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLA--LDCVTRYARIL 602 (1106)
Q Consensus 533 D~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fs--ee~v~~Y~eLy 602 (1106)
| +..+. +.|+..+..|..+=++++.+.+..-+.. .....+++++.+..... ...+..|.+.+
T Consensus 300 N----S~~l~--d~GYYY~~fD~~~G~r~L~~A~~~HD~~--~~~Y~~ra~~~l~~~~p~n~~nv~~y~~~L 363 (364)
T PF10933_consen 300 N----SPLLK--DVGYYYPDFDAFEGARQLLRAIREHDAD--LDAYRARARRLLDRLSPENPANVRAYEARL 363 (364)
T ss_pred C----cchhc--ccCcCCCCccHHHHHHHHHHHHHHcccc--HHHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Confidence 3 34453 3899999999999999999988755532 56677788887776654 45555776654
No 224
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=31.60 E-value=4.3e+02 Score=28.31 Aligned_cols=107 Identities=12% Similarity=0.106 Sum_probs=62.2
Q ss_pred EEEEcCCCCccHHHHHHHHHHc-CCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHh---CCCEE
Q 001292 457 VFLCGNSTDGYNDALQEVASRL-GLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF---GIPVI 530 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaekl-GL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~---G~PVI 530 (1106)
++|+.+++.. .+.+..+.+.. ++. .|.......+....+.. .|++++--... ..-|..++..+.. ..|||
T Consensus 7 ilivdd~~~~-~~~l~~~L~~~~~~~--~v~~a~~~~~al~~~~~~~pdlvllD~~mp-~~~gle~~~~l~~~~~~~~ii 82 (225)
T PRK10046 7 LLIVEDETPL-AEMHAEYIRHIPGFS--QILLAGNLAQARMMIERFKPGLILLDNYLP-DGRGINLLHELVQAHYPGDVV 82 (225)
T ss_pred EEEECCCHHH-HHHHHHHHHhCCCcE--EEEEECCHHHHHHHHHhcCCCEEEEeCCCC-CCcHHHHHHHHHhcCCCCCEE
Confidence 5667776642 34455555432 222 23333343444444433 68888754442 2346666666643 35566
Q ss_pred e-cCCC---CchhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 531 T-PDFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 531 A-SD~g---GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
. +... .+.+.+..|..|++..+.+.++|.++|..+..
T Consensus 83 vls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~ 123 (225)
T PRK10046 83 FTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 (225)
T ss_pred EEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHH
Confidence 4 3332 24455667889999999999999999987654
No 225
>PRK07714 hypothetical protein; Provisional
Probab=31.33 E-value=2.2e+02 Score=27.45 Aligned_cols=77 Identities=12% Similarity=0.192 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEcc
Q 001292 429 DYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGS 508 (1106)
Q Consensus 429 g~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS 508 (1106)
|.+.++++++. ..+++++++.+.++.....+..++...+++ ++..++.+++...+...-..++.
T Consensus 22 G~~~v~~al~~------------g~~~lViiA~D~s~~~~~ki~~~~~~~~vp---~~~~~sk~eLG~a~Gk~~~~~va- 85 (100)
T PRK07714 22 GEELVLKEVRS------------GKAKLVLLSEDASVNTTKKITDKCTYYNVP---MRKVENRQQLGHAIGKDERVVVA- 85 (100)
T ss_pred cHHHHHHHHHh------------CCceEEEEeCCCCHHHHHHHHHHHHhcCCC---EEEeCCHHHHHHHhCCCcceEEE-
Confidence 56666777632 234667788887766678888888877776 45568888999999876554433
Q ss_pred CCCCCCCcHHHHHH
Q 001292 509 SQVEQGFPSLIVRA 522 (1106)
Q Consensus 509 ~~EeEGFGlvLLEA 522 (1106)
..+ ++|.-.+++.
T Consensus 86 i~d-~g~a~~l~~~ 98 (100)
T PRK07714 86 VLD-EGFAKKLRSM 98 (100)
T ss_pred EeC-chhHHHHHHH
Confidence 232 3666666654
No 226
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=30.45 E-value=4.2e+02 Score=27.34 Aligned_cols=106 Identities=14% Similarity=0.072 Sum_probs=61.8
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHH---hCCCEEe
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMT---FGIPVIT 531 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA---~G~PVIA 531 (1106)
++++.+.+.. ...+.......|. .|.......+....+.. .|++++-.... ...|..+++.+. ..+|||+
T Consensus 6 ilivdd~~~~-~~~l~~~l~~~~~---~v~~~~~~~~~~~~~~~~~~dlvl~d~~~~-~~~g~~~~~~l~~~~~~~~ii~ 80 (228)
T PRK11083 6 ILLVEDEQAI-ADTLVYALQSEGF---TVEWFERGLPALDKLRQQPPDLVILDVGLP-DISGFELCRQLLAFHPALPVIF 80 (228)
T ss_pred EEEEeCCHHH-HHHHHHHHHHCCC---EEEEEcCHHHHHHHHhcCCCCEEEEeCCCC-CCCHHHHHHHHHhhCCCCCEEE
Confidence 4566665542 4556655555443 24433343344333433 68888765443 245667776665 3578776
Q ss_pred c-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 532 P-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 532 S-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
- .... ....+..|..+++..+.+.++|..+|..++.
T Consensus 81 ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 120 (228)
T PRK11083 81 LTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILR 120 (228)
T ss_pred EEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHC
Confidence 4 2222 2345566778899988888888888776554
No 227
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.38 E-value=3.6e+02 Score=29.26 Aligned_cols=62 Identities=11% Similarity=0.077 Sum_probs=38.4
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHHHHHhHHHHHhhccCccEEEEc
Q 001292 224 RIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLWEQIAGQISILGQEQYSLIDWS 290 (1106)
Q Consensus 224 RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r~lg~lvkiIr~~~pDiIh~~ 290 (1106)
+|+++++++.-.--..++..+.+.+++.||+|.++.... ......+. +..+...++|.+-+.
T Consensus 1 ~igv~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~~~~~~-~~~~~~~~----i~~~~~~~~Dgiii~ 62 (282)
T cd06318 1 KIGFSQYTLNSPFFAALTEAAKAHAKALGYELISTDAQG-DLTKQIAD----VEDLLTRGVNVLIIN 62 (282)
T ss_pred CeeEEeccccCHHHHHHHHHHHHHHHHcCCEEEEEcCCC-CHHHHHHH----HHHHHHcCCCEEEEe
Confidence 477888876555556677788889999999998765432 22222222 233444577755553
No 228
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=29.97 E-value=4.7e+02 Score=28.32 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=27.7
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcC
Q 001292 224 RIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVR 261 (1106)
Q Consensus 224 RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~ 261 (1106)
+|+++++++.-.....++..+.+++++.||++.++...
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~ 38 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKKLGVSVDIQAAP 38 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHHHhCCeEEEEccC
Confidence 46778877654445556667778888999999987653
No 229
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=29.67 E-value=2.6e+02 Score=26.64 Aligned_cols=67 Identities=18% Similarity=0.343 Sum_probs=44.7
Q ss_pred CCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHHhCCCE
Q 001292 452 GSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMTFGIPV 529 (1106)
Q Consensus 452 PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA~G~PV 529 (1106)
+++.+.-++...+ +..++.++++|++ ...++.+++. ..|++++.+... .-.-.+.+++..|++|
T Consensus 24 ~~~~v~~v~d~~~----~~~~~~~~~~~~~--------~~~~~~~ll~~~~~D~V~I~tp~~--~h~~~~~~~l~~g~~v 89 (120)
T PF01408_consen 24 PDFEVVAVCDPDP----ERAEAFAEKYGIP--------VYTDLEELLADEDVDAVIIATPPS--SHAEIAKKALEAGKHV 89 (120)
T ss_dssp TTEEEEEEECSSH----HHHHHHHHHTTSE--------EESSHHHHHHHTTESEEEEESSGG--GHHHHHHHHHHTTSEE
T ss_pred CCcEEEEEEeCCH----HHHHHHHHHhccc--------chhHHHHHHHhhcCCEEEEecCCc--chHHHHHHHHHcCCEE
Confidence 5555333444443 5667777777664 1235777777 689888776543 4466788999999999
Q ss_pred Eec
Q 001292 530 ITP 532 (1106)
Q Consensus 530 IAS 532 (1106)
++-
T Consensus 90 ~~E 92 (120)
T PF01408_consen 90 LVE 92 (120)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 230
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.47 E-value=4.6e+02 Score=28.90 Aligned_cols=38 Identities=11% Similarity=0.113 Sum_probs=25.3
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcC
Q 001292 224 RIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVR 261 (1106)
Q Consensus 224 RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~ 261 (1106)
||++|.++..-.-...++..+.+.+.+.|+++.++...
T Consensus 1 ~i~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~ 38 (294)
T cd06316 1 KAAIVMHTSGSDWSNAQVRGAKDEFAKLGIEVVATTDA 38 (294)
T ss_pred CeEEEecCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Confidence 57778877653333445556778888999999865433
No 231
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=29.26 E-value=4e+02 Score=27.20 Aligned_cols=107 Identities=10% Similarity=0.022 Sum_probs=60.8
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEE-EcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHHh---CCCEE
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVR-HYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMTF---GIPVI 530 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~-flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA~---G~PVI 530 (1106)
++++.+.+.. ...+....+..|. .|. ......+....+. ..|++++-.... ...|..++.-+.. ..|+|
T Consensus 3 ilivdd~~~~-~~~l~~~L~~~~~---~v~~~~~~~~~~~~~~~~~~~dlvi~d~~~~-~~~g~~~~~~l~~~~~~~~ii 77 (204)
T PRK09958 3 AIIIDDHPLA-IAAIRNLLIKNDI---EILAELTEGGSAVQRVETLKPDIVIIDVDIP-GVNGIQVLETLRKRQYSGIII 77 (204)
T ss_pred EEEECCcHHH-HHHHHHHHhcCCC---EEEEEeCCHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHhhCCCCeEE
Confidence 3556665532 3445444443332 233 2333334333333 258887754442 2456666665553 45665
Q ss_pred ec-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHhC
Q 001292 531 TP-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFISN 568 (1106)
Q Consensus 531 AS-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsD 568 (1106)
+- .... ..+.+..|..+++..+.++++|..+|..++..
T Consensus 78 ~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 119 (204)
T PRK09958 78 IVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 (204)
T ss_pred EEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 43 3222 23455667789999999999999999888754
No 232
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=29.25 E-value=6.2e+02 Score=25.70 Aligned_cols=110 Identities=8% Similarity=0.009 Sum_probs=64.7
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEE-EcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHHh---CCCEE
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVR-HYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMTF---GIPVI 530 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~-flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA~---G~PVI 530 (1106)
++++.+.+.. ...++...+..+-- .+. ..+...+....+. ..|++++-.... +.-|..+++.+.. .+|||
T Consensus 6 iliv~d~~~~-~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~dlvild~~l~-~~~g~~~~~~l~~~~~~~~ii 81 (210)
T PRK09935 6 VIIMDTHPII-RMSIEVLLQKNSEL--QIVLKTDDYRITIDYLRTRPVDLIIMDIDLP-GTDGFTFLKRIKQIQSTVKVL 81 (210)
T ss_pred EEEECCcHHH-HHHHHHHHhhCCCc--eEEEEeCCHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHhCCCCcEE
Confidence 4666666542 34555555433211 232 3344344433332 368888765443 2456777777653 46766
Q ss_pred ec-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcc
Q 001292 531 TP-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGK 570 (1106)
Q Consensus 531 AS-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpe 570 (1106)
+- +... ....+..|..+++..+.+.++|..+|..++....
T Consensus 82 ~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~~ 125 (210)
T PRK09935 82 FLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGYT 125 (210)
T ss_pred EEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCCc
Confidence 54 3332 2344566778999999999999999988877543
No 233
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.20 E-value=5.5e+02 Score=27.68 Aligned_cols=37 Identities=14% Similarity=0.124 Sum_probs=27.6
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEc
Q 001292 224 RIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAV 260 (1106)
Q Consensus 224 RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~ 260 (1106)
||+++.+++.-.--...+..+.+.+++.||.+.++..
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 37 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKELGVKVTFQGP 37 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 5888888775444555666777888889999998754
No 234
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=28.13 E-value=1.4e+02 Score=30.06 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=31.6
Q ss_pred CEEEEEeCCCCCChhHHH-HHHHHHHHHHCCCEEEEEEcCC
Q 001292 223 PRIGLILGNMAKDSRSLL-LITVVKNLQKLGYVFKIYAVRS 262 (1106)
Q Consensus 223 ~RIalVlg~L~~gGesl~-vv~LakaLqe~GyeVtV~t~~d 262 (1106)
+||++|.++...+|.+.. +-.+++.|.+.|+++.++.+.+
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~ 41 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLAD 41 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTT
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 689999999988776654 4557777778899999998776
No 235
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=27.85 E-value=4.1e+02 Score=32.36 Aligned_cols=43 Identities=14% Similarity=0.013 Sum_probs=28.5
Q ss_pred hhHHHHHHHcCeEEEcc--CCCCCCCcH----HHHHHHHhCCCEEecCCC
Q 001292 492 GDVNGVLLMADIVLYGS--SQVEQGFPS----LIVRAMTFGIPVITPDFP 535 (1106)
Q Consensus 492 eDL~~LyaaADVfV~PS--~~EeEGFGl----vLLEAMA~G~PVIASD~g 535 (1106)
.++...+..||++|..+ .+- +.+|. -++-|..+|+||+....+
T Consensus 109 ~~~~~~l~~aDlvI~gGG~lfq-D~y~~~~~~y~l~A~l~gkpv~l~gqs 157 (426)
T PRK10017 109 TDFVRLLSGYDAIIQVGGSFFV-DLYGVPQFEHALCAFMAKKPLYMIGHS 157 (426)
T ss_pred HHHHHHHHhCCEEEECCCCccc-cCcccHHHHHHHHHHHcCCCEEEECCc
Confidence 46677899999999864 221 12332 145678899999986443
No 236
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=27.68 E-value=5.3e+02 Score=26.88 Aligned_cols=106 Identities=10% Similarity=0.097 Sum_probs=61.2
Q ss_pred EEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCC-CCcHHHHHHHH---hCCCEEe
Q 001292 458 FLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQ-GFPSLIVRAMT---FGIPVIT 531 (1106)
Q Consensus 458 IIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeE-GFGlvLLEAMA---~G~PVIA 531 (1106)
+++.+.+. ....+....+..|+ .|.......+....+. ..|++++-.....+ ..|..+++.+. ..+|||.
T Consensus 4 Livdd~~~-~~~~l~~~L~~~~~---~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ 79 (227)
T TIGR03787 4 AIVEDEAA-IRENYADALKRQGY---QVTTYADRPSAMQAFRQRLPDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIF 79 (227)
T ss_pred EEEeCCHH-HHHHHHHHHHHCCc---EEEEecCHHHHHHHHHhCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 44555443 23556666655444 2444444444444443 36888876544311 13667776664 3578876
Q ss_pred c-CCC---CchhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 532 P-DFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 532 S-D~g---GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
- ... .....+..|..+++..+.+.++|...|..++.
T Consensus 80 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 119 (227)
T TIGR03787 80 LTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFR 119 (227)
T ss_pred EECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 4 222 23345666788999988899998888876654
No 237
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=27.35 E-value=1.1e+02 Score=35.92 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=32.5
Q ss_pred EEEeCCCCCCh--hHHHHHHHHHHHHHCCCEEEEEEcCCCC
Q 001292 226 GLILGNMAKDS--RSLLLITVVKNLQKLGYVFKIYAVRSGN 264 (1106)
Q Consensus 226 alVlg~L~~gG--esl~vv~LakaLqe~GyeVtV~t~~dg~ 264 (1106)
.+.+||+..|| -+-++..|++.|+++|+.+.|++-+.+.
T Consensus 37 VIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~ 77 (326)
T PF02606_consen 37 VISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRGYGR 77 (326)
T ss_pred EEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEcCCCCC
Confidence 36679988854 5778999999999999999999886654
No 238
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.05 E-value=6.8e+02 Score=27.46 Aligned_cols=64 Identities=9% Similarity=-0.013 Sum_probs=41.7
Q ss_pred CEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHHHHHhHHHHHhhccCccEEEEcc
Q 001292 223 PRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLWEQIAGQISILGQEQYSLIDWSI 291 (1106)
Q Consensus 223 ~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r~lg~lvkiIr~~~pDiIh~~~ 291 (1106)
++|+++.+++.-.....++..+.+.+++.||.+.+..... ......+ .+..+...++|-+-+..
T Consensus 1 ~~ig~i~~~~~~~~~~~~~~gi~~~a~~~gy~~~~~~~~~-~~~~~~~----~i~~l~~~~vdgiil~~ 64 (280)
T cd06315 1 KNIIFVASDLKNGGILGVGEGVREAAKAIGWNLRILDGRG-SEAGQAA----ALNQAIALKPDGIVLGG 64 (280)
T ss_pred CeEEEEecccCCcHHHHHHHHHHHHHHHcCcEEEEECCCC-CHHHHHH----HHHHHHHcCCCEEEEcC
Confidence 3588888887766666777788899999999998865432 2222112 23445556788665543
No 239
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=27.05 E-value=5.6e+02 Score=28.54 Aligned_cols=87 Identities=11% Similarity=-0.058 Sum_probs=46.4
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHHHHHhHHHHHhhccCccEEEEccccHHHHHHHHHH
Q 001292 224 RIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLWEQIAGQISILGQEQYSLIDWSIFDGIIADSLEAK 303 (1106)
Q Consensus 224 RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r~lg~lvkiIr~~~pDiIh~~~~~~i~v~~La~k 303 (1106)
+|+++.+...-.--..+...+.+++++.||.|.+++..+.......+. +..+...++|-+-+.......+.....+
T Consensus 1 ~I~vi~~~~~~~f~~~i~~gi~~~a~~~g~~v~~~~~~~~d~~~~~~~----i~~~~~~~~DgiIi~~~~~~~~~~~~~~ 76 (298)
T cd06302 1 TIAFVPKVTGIPYFNRMEEGAKEAAKELGVDAIYVGPTTADAAGQVQI----IEDLIAQGVDAIAVVPNDPDALEPVLKK 76 (298)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHH----HHHHHhcCCCEEEEecCCHHHHHHHHHH
Confidence 467777765544455566677788888999999864443222222222 2233334678555543332211111111
Q ss_pred HhhhhcccCCCCCCcEEEE
Q 001292 304 EAISSLMQEPFHSIPLVWI 322 (1106)
Q Consensus 304 ~~idII~te~~~gIPVI~t 322 (1106)
.. ..++|+|..
T Consensus 77 ~~--------~~~iPvV~v 87 (298)
T cd06302 77 AR--------EAGIKVVTH 87 (298)
T ss_pred HH--------HCCCeEEEE
Confidence 11 267898876
No 240
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=26.82 E-value=4.4e+02 Score=28.35 Aligned_cols=40 Identities=23% Similarity=0.209 Sum_probs=32.3
Q ss_pred CEEEEEeCCCCCChhHHHHHH-HHHHHHHCCCEEEEEEcCC
Q 001292 223 PRIGLILGNMAKDSRSLLLIT-VVKNLQKLGYVFKIYAVRS 262 (1106)
Q Consensus 223 ~RIalVlg~L~~gGesl~vv~-LakaLqe~GyeVtV~t~~d 262 (1106)
++|++|.|+...++.+..+.. +++.|.+.|++|.++...+
T Consensus 1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~~ 41 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQN 41 (191)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEccC
Confidence 589999999999888776655 5567888899999987765
No 241
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=26.33 E-value=5.2e+02 Score=26.89 Aligned_cols=106 Identities=12% Similarity=0.078 Sum_probs=61.4
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHH---hCCCEEe
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMT---FGIPVIT 531 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA---~G~PVIA 531 (1106)
++++.+.+.. ...+....+..|. .|.......+....+. ..|++++-.... ..-|..+++.+. ..+|+|+
T Consensus 3 iLlv~d~~~~-~~~l~~~L~~~g~---~v~~~~~~~~~l~~~~~~~~dlvild~~l~-~~~g~~l~~~lr~~~~~~pii~ 77 (223)
T PRK10816 3 VLVVEDNALL-RHHLKVQLQDAGH---QVDAAEDAKEADYYLNEHLPDIAIVDLGLP-DEDGLSLIRRWRSNDVSLPILV 77 (223)
T ss_pred EEEEeCCHHH-HHHHHHHHHHCCC---EEEEECCHHHHHHHHhhCCCCEEEEECCCC-CCCHHHHHHHHHhcCCCCCEEE
Confidence 3455554432 4556666665554 3444444444444443 368888754432 234666666554 3678876
Q ss_pred c-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 532 P-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 532 S-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
- .... ....+..|..+++..|.+.++|...|..++.
T Consensus 78 ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~ 117 (223)
T PRK10816 78 LTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 (223)
T ss_pred EEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHh
Confidence 4 2222 2344556778888888888888887776543
No 242
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=26.24 E-value=5.7e+02 Score=26.66 Aligned_cols=105 Identities=11% Similarity=0.052 Sum_probs=60.1
Q ss_pred EEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHH---hCCCEEec
Q 001292 458 FLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMT---FGIPVITP 532 (1106)
Q Consensus 458 IIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA---~G~PVIAS 532 (1106)
+++.+.+.. ...+.......|. .|.......+....+. ..|++++-.... ..-|..+++.+. ..+|||+.
T Consensus 4 liv~d~~~~-~~~l~~~L~~~g~---~v~~~~~~~~~~~~~~~~~~dlvild~~~~-~~~g~~~~~~lr~~~~~~pii~l 78 (227)
T PRK09836 4 LIVEDEKKT-GEYLTKGLTEAGF---VVDLADNGLNGYHLAMTGDYDLIILDIMLP-DVNGWDIVRMLRSANKGMPILLL 78 (227)
T ss_pred EEEeCCHHH-HHHHHHHHHHCCC---EEEEECCHHHHHHHHhhCCCCEEEEECCCC-CCCHHHHHHHHHhcCCCCCEEEE
Confidence 455555432 3556665555544 2444444334333332 368888754432 244666666654 36788775
Q ss_pred CC-CC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 533 DF-PI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 533 D~-gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
.. .. ..+.+..|..+++..|.+.++|...|..++.
T Consensus 79 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 117 (227)
T PRK09836 79 TALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLR 117 (227)
T ss_pred EcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 22 22 2344566778899988888888887766543
No 243
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=25.96 E-value=5.7e+02 Score=26.50 Aligned_cols=106 Identities=10% Similarity=0.042 Sum_probs=62.2
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHHh--CCCEEec
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMTF--GIPVITP 532 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA~--G~PVIAS 532 (1106)
++++.+.+.. ...+.......|. .|.......+....+. ..|++++..... ..-|..+++.+.. ..|||+-
T Consensus 5 iLlv~d~~~~-~~~l~~~l~~~~~---~v~~~~~~~~~~~~~~~~~~dlvild~~l~-~~~g~~~~~~lr~~~~~~ii~l 79 (221)
T PRK10766 5 ILVVEDEPVT-RARLQGYFEQEGY---TVSEAASGAGMREIMQNQHVDLILLDINLP-GEDGLMLTRELRSRSTVGIILV 79 (221)
T ss_pred EEEEeCCHHH-HHHHHHHHHHcCC---EEEEECCHHHHHHHHhcCCCCEEEEeCCCC-CCCHHHHHHHHHhCCCCCEEEE
Confidence 4566665542 4556666665553 3544444444444443 368888765443 2346666666543 5777764
Q ss_pred -CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 533 -DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 533 -D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
.... ..+.+..|..+++..|-+.++|...|..++.
T Consensus 80 ~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~ 118 (221)
T PRK10766 80 TGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLW 118 (221)
T ss_pred ECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHh
Confidence 2222 2234556777888888888888877776653
No 244
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=25.76 E-value=5.8e+02 Score=31.64 Aligned_cols=39 Identities=18% Similarity=0.347 Sum_probs=34.3
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCC
Q 001292 224 RIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRS 262 (1106)
Q Consensus 224 RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~d 262 (1106)
||.+|++++.-.+...++.++...+.+..++|.+++..+
T Consensus 2 RIGyvS~Df~~Hpv~~l~~~ll~~hDr~rfev~~Ys~~~ 40 (468)
T PF13844_consen 2 RIGYVSSDFRNHPVGHLLQPLLENHDRSRFEVFCYSLGP 40 (468)
T ss_dssp EEEEEES-SSSSHHHHHHHHHHHHHHHHTEEEEEEESS-
T ss_pred EEEEECCcchhCHHHHHHHHHHHhcCcccEEEEEEECCC
Confidence 799999999999999999999999999999999998764
No 245
>PRK09581 pleD response regulator PleD; Reviewed
Probab=25.73 E-value=4.5e+02 Score=30.67 Aligned_cols=106 Identities=12% Similarity=0.027 Sum_probs=66.7
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHh-----CCCE
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF-----GIPV 529 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~-----G~PV 529 (1106)
++++.+.+.. ...+.......+. .|.......+....+.. .|++++..... ..-|..+++.+.. .+||
T Consensus 5 ilii~~~~~~-~~~l~~~l~~~~~---~v~~~~~~~~~~~~~~~~~~dlvi~d~~~~-~~~g~~l~~~i~~~~~~~~~~i 79 (457)
T PRK09581 5 ILVVDDIPAN-VKLLEAKLLAEYY---TVLTASSGAEAIAICEREQPDIILLDVMMP-GMDGFEVCRRLKSDPATTHIPV 79 (457)
T ss_pred EEEEeCCHHH-HHHHHHHHHhCCC---EEEEeCCHHHHHHHHhhcCCCEEEEeCCCC-CCCHHHHHHHHHcCcccCCCCE
Confidence 4556665542 3555555554333 34444444555555543 68888765543 3457888887753 5788
Q ss_pred Eec-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 530 ITP-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 530 IAS-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
|+- +.+. ..+.+..|..+++..|.+.++|...+..++.
T Consensus 80 i~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 121 (457)
T PRK09581 80 VMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTR 121 (457)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Confidence 764 3222 3355667888999999999999999888765
No 246
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=25.65 E-value=3e+02 Score=31.17 Aligned_cols=86 Identities=10% Similarity=0.068 Sum_probs=54.8
Q ss_pred CCcHHHHHHHHhCCCEEecCCC---CchhhhccCCeEEEEcCCCH--HHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Q 001292 514 GFPSLIVRAMTFGIPVITPDFP---IIKEYVAEGAQVIFFQKDNP--EGLSRAFSLFISNGKLSKFARTVASAGRLHAKN 588 (1106)
Q Consensus 514 GFGlvLLEAMA~G~PVIASD~g---GI~EiV~Dg~nG~LV~~~D~--eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake 588 (1106)
+++..+-=-|+|+-.||..... -..+.+....+=+-+. .|- ++|.++|.-+.++++. +++|+++|++++.+
T Consensus 156 ~~S~rl~~~l~~~Svvl~~~~~~~~~~~~~L~P~~HYvPv~-~d~sd~~l~~~i~~~~~~~~~---a~~Ia~~~~~~~~~ 231 (256)
T smart00672 156 AWSVRLKYILACDSVVLKVKPEYYEFFSRGLQPWVHYWPIK-SDLSCRELKEAVDWGNEHDKK---AQEIGKRGSEFIQQ 231 (256)
T ss_pred cchhhHHHHHhcCceEEEeCCchhHHHHhcccCccceEEee-CCCchhhHHHHHHHHHhCHHH---HHHHHHHHHHHHHH
Confidence 4455555567777777765432 1223343333322222 232 3499999999999987 89999999999999
Q ss_pred hcHHHHHH-HHHHHHH
Q 001292 589 MLALDCVT-RYARILE 603 (1106)
Q Consensus 589 ~fsee~v~-~Y~eLye 603 (1106)
+...+.+. -+..++.
T Consensus 232 ~L~~~~~~~Y~~~ll~ 247 (256)
T smart00672 232 NLSMEDVYDYMFHLLQ 247 (256)
T ss_pred HcCHHHHHHHHHHHHH
Confidence 88766555 4444544
No 247
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=25.52 E-value=5.7e+02 Score=28.72 Aligned_cols=82 Identities=18% Similarity=0.233 Sum_probs=51.3
Q ss_pred CEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHHHHHhHHHHHhhccCccEEEEccccH--HHHHHH
Q 001292 223 PRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLWEQIAGQISILGQEQYSLIDWSIFDG--IIADSL 300 (1106)
Q Consensus 223 ~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r~lg~lvkiIr~~~pDiIh~~~~~~--i~v~~L 300 (1106)
..|.+|++++.----.-.+..+-+++.+.||.+.++...+..... +. ++.+...+.|-+-+..... .-+..+
T Consensus 2 ~~IGvivp~~~npff~~ii~gIe~~a~~~Gy~l~l~~t~~~~~~e--~~----i~~l~~~~vDGiI~~s~~~~~~~l~~~ 75 (279)
T PF00532_consen 2 KTIGVIVPDISNPFFAEIIRGIEQEAREHGYQLLLCNTGDDEEKE--EY----IELLLQRRVDGIILASSENDDEELRRL 75 (279)
T ss_dssp CEEEEEESSSTSHHHHHHHHHHHHHHHHTTCEEEEEEETTTHHHH--HH----HHHHHHTTSSEEEEESSSCTCHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHHcCCEEEEecCCCchHHH--HH----HHHHHhcCCCEEEEecccCChHHHHHH
Confidence 468899999855445566777888888999999988766532222 33 4556666888443322222 223333
Q ss_pred HHHHhhhhcccCCCCCCcEEEE
Q 001292 301 EAKEAISSLMQEPFHSIPLVWI 322 (1106)
Q Consensus 301 a~k~~idII~te~~~gIPVI~t 322 (1106)
.. .++|+|..
T Consensus 76 ~~------------~~iPvV~~ 85 (279)
T PF00532_consen 76 IK------------SGIPVVLI 85 (279)
T ss_dssp HH------------TTSEEEEE
T ss_pred HH------------cCCCEEEE
Confidence 33 46898877
No 248
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=25.43 E-value=57 Score=42.79 Aligned_cols=33 Identities=36% Similarity=0.568 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhcccccc
Q 001292 1070 EREREERYRQKMDKKRKMKEKMFDRLTKGYRQKT 1103 (1106)
Q Consensus 1070 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1103 (1106)
.||||.|.|++.||..+.+| |-+|||-++.-|+
T Consensus 718 ~rErelrERE~Rere~reRe-LrdRlK~gfe~kp 750 (982)
T PF03154_consen 718 ARERELREREIRERELRERE-LRDRLKPGFEVKP 750 (982)
T ss_pred hhhhhhhhhhhhhHHHHHHH-HHHhhccccccCC
Confidence 46788888888777777776 5599999987775
No 249
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=25.11 E-value=2e+02 Score=28.04 Aligned_cols=75 Identities=17% Similarity=0.204 Sum_probs=48.6
Q ss_pred EEEEEcCCCCc--cHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHH--HHHhCCCEEe
Q 001292 456 FVFLCGNSTDG--YNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVR--AMTFGIPVIT 531 (1106)
Q Consensus 456 fLIIVG~Gper--Y~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLE--AMA~G~PVIA 531 (1106)
.|+++|.|-.. -.+.+++.+++.|++- .|. -....++......+|+++.+... .|=..=++ +...|+||.+
T Consensus 3 Ill~C~~GaSSs~la~km~~~a~~~gi~~-~i~-a~~~~e~~~~~~~~Dvill~PQv---~~~~~~i~~~~~~~~ipv~~ 77 (99)
T cd05565 3 VLVLCAGGGTSGLLANALNKGAKERGVPL-EAA-AGAYGSHYDMIPDYDLVILAPQM---ASYYDELKKDTDRLGIKLVT 77 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcE-EEE-EeeHHHHHHhccCCCEEEEcChH---HHHHHHHHHHhhhcCCCEEE
Confidence 46777877432 3577789999999862 222 33567888899999998877543 22223333 4456889988
Q ss_pred cCCC
Q 001292 532 PDFP 535 (1106)
Q Consensus 532 SD~g 535 (1106)
-+..
T Consensus 78 I~~~ 81 (99)
T cd05565 78 TTGK 81 (99)
T ss_pred eCHH
Confidence 7643
No 250
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=24.88 E-value=6.2e+02 Score=28.86 Aligned_cols=101 Identities=16% Similarity=0.131 Sum_probs=60.1
Q ss_pred EEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEc-----------C--CCCccHHHHHHHHHHcC
Q 001292 413 VVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCG-----------N--STDGYNDALQEVASRLG 479 (1106)
Q Consensus 413 VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG-----------~--GperY~eeLkeLaeklG 479 (1106)
.++++| ... ..+.+.+++..+.|.+. .++ ++.+| + +.+. ...+++.++++|
T Consensus 28 ~~~iaG-PCs----ie~~~~~~~~A~~lk~~---------g~~-~~r~~~~kpRTs~~s~~G~g~~g-l~~l~~~~~~~G 91 (266)
T PRK13398 28 KIIIAG-PCA----VESEEQMVKVAEKLKEL---------GVH-MLRGGAFKPRTSPYSFQGLGEEG-LKILKEVGDKYN 91 (266)
T ss_pred EEEEEe-CCc----CCCHHHHHHHHHHHHHc---------CCC-EEEEeeecCCCCCCccCCcHHHH-HHHHHHHHHHcC
Confidence 555555 343 45778888888777641 223 34444 1 1122 567788889999
Q ss_pred CCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHH-HHHHhCCCEEecCC
Q 001292 480 LLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIV-RAMTFGIPVITPDF 534 (1106)
Q Consensus 480 L~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLL-EAMA~G~PVIASD~ 534 (1106)
++- -..+. ...++..+...+|++-.||..- .-..++ ++...|+||+.++-
T Consensus 92 l~~-~te~~-d~~~~~~l~~~vd~~kIga~~~---~n~~LL~~~a~~gkPV~lk~G 142 (266)
T PRK13398 92 LPV-VTEVM-DTRDVEEVADYADMLQIGSRNM---QNFELLKEVGKTKKPILLKRG 142 (266)
T ss_pred CCE-EEeeC-ChhhHHHHHHhCCEEEECcccc---cCHHHHHHHhcCCCcEEEeCC
Confidence 873 22222 2234555555689999998753 334344 45567899998753
No 251
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=24.59 E-value=6.9e+02 Score=26.93 Aligned_cols=64 Identities=17% Similarity=0.156 Sum_probs=36.5
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHHC---CCEEEEEEcC-CCCchHHHHHHhHHHHHhhccCccEEEEcc
Q 001292 224 RIGLILGNMAKDSRSLLLITVVKNLQKL---GYVFKIYAVR-SGNSHSLWEQIAGQISILGQEQYSLIDWSI 291 (1106)
Q Consensus 224 RIalVlg~L~~gGesl~vv~LakaLqe~---GyeVtV~t~~-dg~~~~i~r~lg~lvkiIr~~~pDiIh~~~ 291 (1106)
||+++++++.-..-..++..+.+.+.+. ||++.++... +.......+. +..+...++|.|-...
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~----~~~~~~~~vdgiIi~~ 68 (272)
T cd06300 1 KIGLSNSYAGNTWRAQMLDEFKAQAKELKKAGLISEFIVTSADGDVAQQIAD----IRNLIAQGVDAIIINP 68 (272)
T ss_pred CeEEeccccCChHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCHHHHHHH----HHHHHHcCCCEEEEeC
Confidence 5788888776555666667777888888 9965444332 2122222222 2223334778665543
No 252
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=24.58 E-value=5.9e+02 Score=30.64 Aligned_cols=107 Identities=16% Similarity=0.139 Sum_probs=66.1
Q ss_pred HHHHHHcCCC--CCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHH
Q 001292 399 YQLRKENGFL--KDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVAS 476 (1106)
Q Consensus 399 ~~LR~~lGL~--~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLae 476 (1106)
..+..++|++ ++..+|..++ |... ....++++++.. ...++ +++..|.-. ..+.....
T Consensus 168 ~~~~~~lg~~~~~~~~~vSLF~----Ye~~--al~~ll~~~~~~----------~~pv~--lLvp~Gr~~--~~v~~~l~ 227 (371)
T TIGR03837 168 RALLRRLGVGPEPDALLVSLFC----YENA--ALPALLDALAQS----------GSPVH--LLVPEGRAL--AAVAAWLG 227 (371)
T ss_pred HHHHHHcCCCCCCCCeEEEEEe----cCCh--hHHHHHHHHHhC----------CCCeE--EEecCCccH--HHHHHHhC
Confidence 3456677885 5666666665 6543 456666666321 12333 556666543 55554442
Q ss_pred HcCC--------CCCcEEEcC--ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec
Q 001292 477 RLGL--------LEHSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP 532 (1106)
Q Consensus 477 klGL--------~d~rV~flG--~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS 532 (1106)
...+ ..-.|+++. ++++..++|.+||+-++=+. =+.+-|.-.|+|.|=.
T Consensus 228 ~~~~~~g~~~~~g~L~~~~LPf~~Q~~yD~LLW~cD~NfVRGE-------DSFVRAqWAgkPfvWh 286 (371)
T TIGR03837 228 DALLAAGDVHRRGALTVAVLPFVPQDDYDRLLWACDLNFVRGE-------DSFVRAQWAGKPFVWH 286 (371)
T ss_pred ccccCCccccccCceEEEEcCCCChhhHHHHHHhChhcEeech-------hHHHHHHHcCCCceee
Confidence 1111 111466666 45789999999999887653 4789999999999965
No 253
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=24.42 E-value=6.7e+02 Score=27.28 Aligned_cols=86 Identities=10% Similarity=0.058 Sum_probs=45.5
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCC-chHHHHHHhHHHHHhhccCccEEEEccccHHHHHHHHH
Q 001292 224 RIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGN-SHSLWEQIAGQISILGQEQYSLIDWSIFDGIIADSLEA 302 (1106)
Q Consensus 224 RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~-~~~i~r~lg~lvkiIr~~~pDiIh~~~~~~i~v~~La~ 302 (1106)
+|+++++++.-.--..++..+.+++++.|+++.++...... ....... +..+...++|.+-+..........+..
T Consensus 1 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~----i~~~~~~~vdgiI~~~~~~~~~~~~~~ 76 (268)
T cd06306 1 KLCVLYPHLKDAYWLSVNYGMVEEAKRLGVSLKLLEAGGYPNLAKQIAQ----LEDCAAWGADAILLGAVSPDGLNEILQ 76 (268)
T ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH----HHHHHHcCCCEEEEcCCChhhHHHHHH
Confidence 47778877643333445556677788899999887543211 1222122 333334578855554333221111211
Q ss_pred HHhhhhcccCCCCCCcEEEE
Q 001292 303 KEAISSLMQEPFHSIPLVWI 322 (1106)
Q Consensus 303 k~~idII~te~~~gIPVI~t 322 (1106)
.. ..++|+|..
T Consensus 77 -~~--------~~giPvV~~ 87 (268)
T cd06306 77 -QV--------AASIPVIAL 87 (268)
T ss_pred -HH--------HCCCCEEEe
Confidence 11 268999866
No 254
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=24.08 E-value=4e+02 Score=32.31 Aligned_cols=71 Identities=14% Similarity=0.166 Sum_probs=45.4
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCC
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPI 536 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gG 536 (1106)
+.|+.+.. +..++++++++-. .+ . +.+++..++..+|++|..+... -++.- ..+.-+.|.+.-|.+-
T Consensus 208 I~V~nRt~----~ra~~La~~~~~~--~~--~-~~~~l~~~l~~aDiVI~aT~a~---~~vi~-~~~~~~~~~~~iDLav 274 (414)
T PRK13940 208 IMLANRTI----EKAQKITSAFRNA--SA--H-YLSELPQLIKKADIIIAAVNVL---EYIVT-CKYVGDKPRVFIDISI 274 (414)
T ss_pred EEEECCCH----HHHHHHHHHhcCC--eE--e-cHHHHHHHhccCCEEEECcCCC---CeeEC-HHHhCCCCeEEEEeCC
Confidence 57788865 4456777765411 11 1 2367889999999999876542 22222 3344578999888876
Q ss_pred chhh
Q 001292 537 IKEY 540 (1106)
Q Consensus 537 I~Ei 540 (1106)
.+++
T Consensus 275 PRdi 278 (414)
T PRK13940 275 PQAL 278 (414)
T ss_pred CCCC
Confidence 6654
No 255
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=23.98 E-value=4.8e+02 Score=27.15 Aligned_cols=106 Identities=14% Similarity=0.038 Sum_probs=61.3
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHH-HHcCeEEEccCCCCCCCcHHHHHHHHhC--CCEEec-
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVL-LMADIVLYGSSQVEQGFPSLIVRAMTFG--IPVITP- 532 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Ly-aaADVfV~PS~~EeEGFGlvLLEAMA~G--~PVIAS- 532 (1106)
++++.+.+.. ...+....+..|.. |.......+....+ ...|++++-.... ..-|..+++.+... .|+|+-
T Consensus 4 ilivdd~~~~-~~~l~~~l~~~~~~---v~~~~~~~~~~~~~~~~~d~vl~d~~~~-~~~g~~~~~~l~~~~~~~ii~lt 78 (232)
T PRK10955 4 ILLVDDDREL-TSLLKELLEMEGFN---VIVAHDGEQALDLLDDSIDLLLLDVMMP-KKNGIDTLKELRQTHQTPVIMLT 78 (232)
T ss_pred EEEEeCCHHH-HHHHHHHHHHCCCE---EEEeCCHHHHHHHhhcCCCEEEEeCCCC-CCcHHHHHHHHHhcCCCcEEEEE
Confidence 4566666542 45566666655442 44333333333333 3468888764442 23466666665433 677664
Q ss_pred CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 533 DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 533 D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
.... ....+..|..+++..+.+.++|..+|..++.
T Consensus 79 ~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 116 (232)
T PRK10955 79 ARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 (232)
T ss_pred CCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHh
Confidence 2222 2344566778899988889888888877654
No 256
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=23.94 E-value=1.7e+02 Score=34.38 Aligned_cols=38 Identities=18% Similarity=0.380 Sum_probs=31.3
Q ss_pred EEeCCCCCC--hhHHHHHHHHHHHHHCCCEEEEEEcCCCC
Q 001292 227 LILGNMAKD--SRSLLLITVVKNLQKLGYVFKIYAVRSGN 264 (1106)
Q Consensus 227 lVlg~L~~g--Gesl~vv~LakaLqe~GyeVtV~t~~dg~ 264 (1106)
+.+||+..| |-+-++..|++.|+++|+.|.|++-+.+.
T Consensus 52 IsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGYg~ 91 (325)
T PRK00652 52 IVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGYGG 91 (325)
T ss_pred EEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCCCC
Confidence 567888764 56788999999999999999999876643
No 257
>KOG3332 consensus N-acetylglucosaminyl phosphatidylinositol de-N-acetylase [Cell wall/membrane/envelope biogenesis]
Probab=23.89 E-value=3.7e+02 Score=30.19 Aligned_cols=39 Identities=23% Similarity=0.372 Sum_probs=30.4
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCC
Q 001292 224 RIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGN 264 (1106)
Q Consensus 224 RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~ 264 (1106)
||++++.+ ++-+..+.-|.+..|.+.++.|.++|++.|.
T Consensus 39 riLLviAh--pdDE~mFFsPtI~~L~~~~~~v~iLClSnGN 77 (247)
T KOG3332|consen 39 RILLVIAH--PDDESMFFSPTILYLTSGACNVHILCLSNGN 77 (247)
T ss_pred eEEEEEec--cCccccchhhHHHHHhcCCccEEEEEecCCC
Confidence 35555533 4567778889999999999999999997764
No 258
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=23.38 E-value=5.1e+02 Score=28.31 Aligned_cols=81 Identities=16% Similarity=0.210 Sum_probs=52.9
Q ss_pred HHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCC
Q 001292 433 AMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVE 512 (1106)
Q Consensus 433 LLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~Ee 512 (1106)
.+++++.+.+++ |++ ++=+|.-... +++++ +.+.|-. -+.=.+...++.++-...++.++|+..
T Consensus 46 a~~~I~~l~~~~-------p~~--~vGAGTV~~~--e~a~~-a~~aGA~--FivSP~~~~~v~~~~~~~~i~~iPG~~-- 109 (196)
T PF01081_consen 46 ALEAIEALRKEF-------PDL--LVGAGTVLTA--EQAEA-AIAAGAQ--FIVSPGFDPEVIEYAREYGIPYIPGVM-- 109 (196)
T ss_dssp HHHHHHHHHHHH-------TTS--EEEEES--SH--HHHHH-HHHHT-S--EEEESS--HHHHHHHHHHTSEEEEEES--
T ss_pred HHHHHHHHHHHC-------CCC--eeEEEeccCH--HHHHH-HHHcCCC--EEECCCCCHHHHHHHHHcCCcccCCcC--
Confidence 356666666555 665 4556665443 55544 4445654 455556778999999999999999874
Q ss_pred CCCcHHHHHHHHhCCCEEe
Q 001292 513 QGFPSLIVRAMTFGIPVIT 531 (1106)
Q Consensus 513 EGFGlvLLEAMA~G~PVIA 531 (1106)
.|.-+..|+.+|..+|=
T Consensus 110 --TptEi~~A~~~G~~~vK 126 (196)
T PF01081_consen 110 --TPTEIMQALEAGADIVK 126 (196)
T ss_dssp --SHHHHHHHHHTT-SEEE
T ss_pred --CHHHHHHHHHCCCCEEE
Confidence 38889999999998883
No 259
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=23.21 E-value=7.1e+02 Score=26.34 Aligned_cols=106 Identities=12% Similarity=0.101 Sum_probs=62.9
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHH--hCCCEEec
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMT--FGIPVITP 532 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA--~G~PVIAS 532 (1106)
++++.+.+.. ...+....+..|.. |.......+....+. ..|++++-.... ..-|..+++.+. ...|+|..
T Consensus 4 iLivedd~~~-~~~l~~~L~~~g~~---v~~~~~~~~~l~~~~~~~~dlvild~~l~-~~~g~~~~~~ir~~~~~pii~l 78 (240)
T PRK10701 4 IVFVEDDAEV-GSLIAAYLAKHDID---VTVEPRGDRAEATILREQPDLVLLDIMLP-GKDGMTICRDLRPKWQGPIVLL 78 (240)
T ss_pred EEEEeCCHHH-HHHHHHHHHHcCCE---EEEeCCHHHHHHHHhhCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCCCEEEE
Confidence 4556655432 45666666655542 444444444444443 358888765543 245667666664 35677764
Q ss_pred CC-CC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 533 DF-PI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 533 D~-gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
.. .. ..+.+..|..+++..|.+.++|...|..++.
T Consensus 79 ~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~ 117 (240)
T PRK10701 79 TSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 (240)
T ss_pred ECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHh
Confidence 22 21 2244566778899988888888888776654
No 260
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=22.83 E-value=6.6e+02 Score=26.07 Aligned_cols=106 Identities=13% Similarity=0.035 Sum_probs=60.7
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHHh--CCCEEec
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMTF--GIPVITP 532 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA~--G~PVIAS 532 (1106)
++++.+.+.. ...+....+..|.. |.......+....+. ..|++++-.... ..-|..+++.+.. ..|||+-
T Consensus 4 iLivdd~~~~-~~~l~~~L~~~g~~---v~~~~~~~~~~~~~~~~~~dlvild~~l~-~~~g~~~~~~lr~~~~~pvi~l 78 (225)
T PRK10529 4 VLIVEDEQAI-RRFLRTALEGDGMR---VFEAETLQRGLLEAATRKPDLIILDLGLP-DGDGIEFIRDLRQWSAIPVIVL 78 (225)
T ss_pred EEEEeCCHHH-HHHHHHHHHHCCCE---EEEeCCHHHHHHHHhcCCCCEEEEeCCCC-CCCHHHHHHHHHcCCCCCEEEE
Confidence 4556655542 45566666655542 333333233222222 368888765442 2446667766543 5787764
Q ss_pred C-CCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 533 D-FPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 533 D-~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
. ... ..+.+..|..+++..|-+.++|...+..++.
T Consensus 79 t~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~ 117 (225)
T PRK10529 79 SARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 (225)
T ss_pred ECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 2 222 2344556778899988899888888776654
No 261
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=22.64 E-value=7.9e+02 Score=26.39 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=27.1
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEc
Q 001292 224 RIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAV 260 (1106)
Q Consensus 224 RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~ 260 (1106)
+|+++++.+.-.--..++..+.+++++.||++.++..
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~ 37 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEALGGDLRVYDA 37 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHHcCCEEEEECC
Confidence 4677777665444455667788889999999998754
No 262
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=22.58 E-value=3.2e+02 Score=27.02 Aligned_cols=48 Identities=15% Similarity=-0.046 Sum_probs=36.0
Q ss_pred CeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcC
Q 001292 453 SFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMAD 502 (1106)
Q Consensus 453 dikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaAD 502 (1106)
.+++++|+.+-++.....++.+++..+++ -+.+.|...++.......-
T Consensus 41 kaklViiA~D~~~~~kkki~~~~~~~~Vp--v~~~~~t~~eLG~A~Gk~~ 88 (108)
T PTZ00106 41 KAKLVIISNNCPPIRRSEIEYYAMLSKTG--VHHYAGNNNDLGTACGRHF 88 (108)
T ss_pred CeeEEEEeCCCCHHHHHHHHHHHhhcCCC--EEEeCCCHHHHHHHhCCcc
Confidence 45667777777766678888889988877 3456788888888888654
No 263
>PRK11173 two-component response regulator; Provisional
Probab=22.22 E-value=7.5e+02 Score=26.15 Aligned_cols=106 Identities=12% Similarity=0.087 Sum_probs=62.2
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHHh--CCCEEec
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMTF--GIPVITP 532 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA~--G~PVIAS 532 (1106)
++++.+.+.. ...+....+..|. .|.......+....+. ..|++++-.... ..-|..+++.+.. ..|+|+-
T Consensus 6 iLiv~dd~~~-~~~l~~~L~~~g~---~v~~~~~~~~~~~~~~~~~~dlvild~~l~-~~~g~~~~~~lr~~~~~pii~l 80 (237)
T PRK11173 6 ILIVEDELVT-RNTLKSIFEAEGY---DVFEATDGAEMHQILSENDINLVIMDINLP-GKNGLLLARELREQANVALMFL 80 (237)
T ss_pred EEEEeCCHHH-HHHHHHHHHHcCC---EEEEECCHHHHHHHHhhCCCCEEEEcCCCC-CCCHHHHHHHHhcCCCCCEEEE
Confidence 3455555432 4556666665554 3444444444444443 368888765443 2346777776653 5777764
Q ss_pred -CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 533 -DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 533 -D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
.... ..+.+..|..+++..|-+.++|...+..++.
T Consensus 81 t~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~ 119 (237)
T PRK11173 81 TGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 (237)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 2222 2234556778889988888888877776654
No 264
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=21.99 E-value=3.9e+02 Score=30.08 Aligned_cols=80 Identities=11% Similarity=0.101 Sum_probs=47.8
Q ss_pred EEEEcC---CCCccHHHHHHHHHHcCCCCCcEEEcCC-----hhhHHHHHHHcCeEEEccC--------CCCCCCcHHHH
Q 001292 457 VFLCGN---STDGYNDALQEVASRLGLLEHSVRHYGF-----NGDVNGVLLMADIVLYGSS--------QVEQGFPSLIV 520 (1106)
Q Consensus 457 LIIVG~---GperY~eeLkeLaeklGL~d~rV~flG~-----~eDL~~LyaaADVfV~PS~--------~EeEGFGlvLL 520 (1106)
+.+++. .+..|.+.+.+..+++|.....+..+.. .+++.+.+..||++++.+- +.+-+.-..+-
T Consensus 31 I~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~~l~~~l~~t~l~~~l~ 110 (250)
T TIGR02069 31 IVIITSASEEPREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTGGDQLRITSLLGDTPLLDRLR 110 (250)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHHHHHHHHcCCcHHHHHH
Confidence 345554 3334566777777888986422333322 2356788999999888652 21012223466
Q ss_pred HHHHhCCCEEecCCCC
Q 001292 521 RAMTFGIPVITPDFPI 536 (1106)
Q Consensus 521 EAMA~G~PVIASD~gG 536 (1106)
++...|+|++.+-.|.
T Consensus 111 ~~~~~G~vi~G~SAGA 126 (250)
T TIGR02069 111 KRVHEGIILGGTSAGA 126 (250)
T ss_pred HHHHcCCeEEEccHHH
Confidence 7888898877765554
No 265
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=21.98 E-value=7.7e+02 Score=26.74 Aligned_cols=38 Identities=21% Similarity=0.269 Sum_probs=28.1
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCC
Q 001292 225 IGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRS 262 (1106)
Q Consensus 225 IalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~d 262 (1106)
|+++++++.-.-...++..+.++++++||++.+++..+
T Consensus 2 Igvi~p~~~~~~~~~~~~~i~~~~~~~gy~~~~~~~~~ 39 (269)
T cd06297 2 ISVLLPVVATEFYRRLLEGIEGALLEQRYDLALFPLLS 39 (269)
T ss_pred EEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 56777776544445666778888999999999987653
No 266
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=21.87 E-value=2.9e+02 Score=25.89 Aligned_cols=56 Identities=13% Similarity=0.131 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH
Q 001292 429 DYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL 499 (1106)
Q Consensus 429 g~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya 499 (1106)
|....+++++. ...++++|+.+-++.+...+..+++..+++ +.+.+...++..+..
T Consensus 15 G~~~v~kai~~------------gkaklViiA~D~~~~~~~~i~~~c~~~~Vp---~~~~~s~~eLG~a~G 70 (82)
T PRK13602 15 GTKQTVKALKR------------GSVKEVVVAEDADPRLTEKVEALANEKGVP---VSKVDSMKKLGKACG 70 (82)
T ss_pred cHHHHHHHHHc------------CCeeEEEEECCCCHHHHHHHHHHHHHcCCC---EEEECCHHHHHHHHC
Confidence 55666766621 345667888887777778889999988876 666667777776654
No 267
>PRK04155 chaperone protein HchA; Provisional
Probab=21.29 E-value=9.9e+02 Score=27.60 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=29.0
Q ss_pred CCEEEEEeCCCCC----------Ch-hHHHHHHHHHHHHHCCCEEEEEEcCC
Q 001292 222 PPRIGLILGNMAK----------DS-RSLLLITVVKNLQKLGYVFKIYAVRS 262 (1106)
Q Consensus 222 ~~RIalVlg~L~~----------gG-esl~vv~LakaLqe~GyeVtV~t~~d 262 (1106)
.+|||+|+.+... .| ...-++.-...|.+.|++|++.+...
T Consensus 49 ~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G 100 (287)
T PRK04155 49 GKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSG 100 (287)
T ss_pred CCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 3489999875421 22 34455666788999999999999854
No 268
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=20.94 E-value=2.7e+02 Score=31.41 Aligned_cols=59 Identities=12% Similarity=0.119 Sum_probs=40.0
Q ss_pred CCCCEEEEEeCCCCCChhH-H-HHHHHHHHHHHCCCEEEEEEcCCCCchHHHHHHhHHHHHhhccCccEEEE
Q 001292 220 VRPPRIGLILGNMAKDSRS-L-LLITVVKNLQKLGYVFKIYAVRSGNSHSLWEQIAGQISILGQEQYSLIDW 289 (1106)
Q Consensus 220 ~r~~RIalVlg~L~~gGes-l-~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r~lg~lvkiIr~~~pDiIh~ 289 (1106)
.++++|+++++.-..+... + ....++++|++.||+|.++...+. ....+...++|.+-.
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~-----------~~~~~~~~~~D~v~~ 62 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGED-----------IAAQLKELGFDRVFN 62 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcc-----------hHHHhccCCCCEEEE
Confidence 4677999999876664332 3 347899999999999999865431 123344457776543
No 269
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=20.77 E-value=7.6e+02 Score=26.90 Aligned_cols=85 Identities=15% Similarity=0.121 Sum_probs=46.1
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHHHHHhHHHHHhhccCccEEEEccccHHHHHHHHHH
Q 001292 224 RIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLWEQIAGQISILGQEQYSLIDWSIFDGIIADSLEAK 303 (1106)
Q Consensus 224 RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r~lg~lvkiIr~~~pDiIh~~~~~~i~v~~La~k 303 (1106)
+|++|++++.-.--..++..+.+++++.||.+.++...+ ....... +..+...++|-+-+..............
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~--~~~~~~~----i~~~~~~~~dgiii~~~~~~~~~~~~~~ 74 (289)
T cd01540 1 KIGFIVKQPEEPWFQTEWKFAKKAAKEKGFTVVKIDVPD--GEKVLSA----IDNLGAQGAKGFVICVPDVKLGPAIVAK 74 (289)
T ss_pred CeeeecCCCCCcHHHHHHHHHHHHHHHcCCEEEEccCCC--HHHHHHH----HHHHHHcCCCEEEEccCchhhhHHHHHH
Confidence 367777765433445556667788889999998765442 2222222 3334445778655544332222211111
Q ss_pred HhhhhcccCCCCCCcEEEE
Q 001292 304 EAISSLMQEPFHSIPLVWI 322 (1106)
Q Consensus 304 ~~idII~te~~~gIPVI~t 322 (1106)
.. ..++|+|..
T Consensus 75 ~~--------~~~iPvV~~ 85 (289)
T cd01540 75 AK--------AYNMKVVAV 85 (289)
T ss_pred HH--------hCCCeEEEe
Confidence 11 268899876
No 270
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=20.63 E-value=1e+03 Score=27.35 Aligned_cols=66 Identities=14% Similarity=0.129 Sum_probs=43.8
Q ss_pred CCCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHHHHHhHHHHHhhccCccEEEEcc
Q 001292 221 RPPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLWEQIAGQISILGQEQYSLIDWSI 291 (1106)
Q Consensus 221 r~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r~lg~lvkiIr~~~pDiIh~~~ 291 (1106)
.+.+|+++.+++.-.--...+..+-+++.+.||.+.+.+... ......+ .+..+...++|-+-+..
T Consensus 24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g~~l~i~~~~~-~~~~~~~----~i~~l~~~~vDGiIi~~ 89 (330)
T PRK10355 24 KEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANG-NEETQMS----QIENMINRGVDVLVIIP 89 (330)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHHHHHHcCCEEEEECCCC-CHHHHHH----HHHHHHHcCCCEEEEeC
Confidence 456888888888777777777788888999999999875543 2222222 23334445788665543
No 271
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=20.61 E-value=3.9e+02 Score=32.98 Aligned_cols=65 Identities=14% Similarity=0.083 Sum_probs=41.9
Q ss_pred EEEEEeCCCCCCh-------hHHHHHHHHHHHHHCC-CEEEEEEcCCCCchHHHHHHhHHHHHhhccCccEEEEcccc
Q 001292 224 RIGLILGNMAKDS-------RSLLLITVVKNLQKLG-YVFKIYAVRSGNSHSLWEQIAGQISILGQEQYSLIDWSIFD 293 (1106)
Q Consensus 224 RIalVlg~L~~gG-------esl~vv~LakaLqe~G-yeVtV~t~~dg~~~~i~r~lg~lvkiIr~~~pDiIh~~~~~ 293 (1106)
||+||.+....+| ..+-+..++..|++.| ++|.++-........ ..+...+...+||+|-+....
T Consensus 1 ~illi~P~~~~~~~~~~~~~pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~-----~~~~~~l~~~~pdvVgis~~t 73 (497)
T TIGR02026 1 RILILNPNYHAGGAEIAGQWPPLWVAYIGGALLDAGYHDVTFLDAMTGPLTD-----EKLVERLRAHCPDLVLITAIT 73 (497)
T ss_pred CeEEEcCCCCccccccCCCcCCHHHHHHHHHHHhcCCcceEEecccccCCCH-----HHHHHHHHhcCcCEEEEecCc
Confidence 5677776655433 2456778888899999 799998654322111 113456667799988775443
No 272
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=20.47 E-value=8.8e+02 Score=25.86 Aligned_cols=61 Identities=15% Similarity=0.220 Sum_probs=37.2
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHHHHHhHHHHHhhccCccEEEE
Q 001292 225 IGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLWEQIAGQISILGQEQYSLIDW 289 (1106)
Q Consensus 225 IalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r~lg~lvkiIr~~~pDiIh~ 289 (1106)
|++|+++..-.--...+..+.+.+++.||.+.++...........+ .+..+...++|-+-+
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~vdgiii 62 (264)
T cd01574 2 IGVVTTDLALHGPSSTLAAIESAAREAGYAVTLSMLAEADEEALRA----AVRRLLAQRVDGVIV 62 (264)
T ss_pred EEEEeCCCCcccHHHHHHHHHHHHHHCCCeEEEEeCCCCchHHHHH----HHHHHHhcCCCEEEE
Confidence 6777777665445556677888888899999998665422222222 233344456775544
No 273
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=20.41 E-value=1.2e+02 Score=30.21 Aligned_cols=46 Identities=20% Similarity=0.249 Sum_probs=30.2
Q ss_pred hhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchh
Q 001292 492 GDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKE 539 (1106)
Q Consensus 492 eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~E 539 (1106)
+++..++..+|++|--|.-+ ..--.+-.++.+|+|+|++-.|...+
T Consensus 59 ~~l~~~~~~~DVvIDfT~p~--~~~~~~~~~~~~g~~~ViGTTG~~~~ 104 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTNPD--AVYDNLEYALKHGVPLVIGTTGFSDE 104 (124)
T ss_dssp S-HHHHTTH-SEEEEES-HH--HHHHHHHHHHHHT-EEEEE-SSSHHH
T ss_pred hhHHHhcccCCEEEEcCChH--HhHHHHHHHHhCCCCEEEECCCCCHH
Confidence 57888888899999665432 44456667888999999987776443
No 274
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=20.21 E-value=4.1e+02 Score=33.29 Aligned_cols=73 Identities=14% Similarity=0.144 Sum_probs=41.5
Q ss_pred cCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCccccc--chhhhh--hhHHhHHHHH---HHHhccc
Q 001292 282 EQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANR--LPVYVE--RGFQNLLSYW---KSVFSRV 354 (1106)
Q Consensus 282 ~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r--~~~Y~~--~gleklis~~---~~~l~~A 354 (1106)
..||.||.|..++.+++.+.... .++|...+-|.-.-.+. +..|.. ...-++..++ ..+++.|
T Consensus 400 ~~PdlI~GnYsDgnlvA~LLs~~----------lgv~~~~iaHsLek~Ky~~s~~~w~e~e~~Yhfs~qftAd~iamn~a 469 (550)
T PF00862_consen 400 GKPDLIIGNYSDGNLVASLLSRK----------LGVTQCFIAHSLEKTKYEDSDLYWKEIEEKYHFSCQFTADLIAMNAA 469 (550)
T ss_dssp S--SEEEEEHHHHHHHHHHHHHH----------HT-EEEEE-SS-HHHHHHTTTTTSHHHHHHH-HHHHHHHHHHHHHHS
T ss_pred CCCcEEEeccCcchHHHHHHHhh----------cCCceehhhhccccccccccCCCHHHHHhhccchhhhhHHHHHhhcC
Confidence 67999999999999998888764 57999999888321110 000100 0001122222 1268999
Q ss_pred cEEEecCCCh
Q 001292 355 NVIVFPDYTL 364 (1106)
Q Consensus 355 D~VIa~S~~~ 364 (1106)
|.||+.++..
T Consensus 470 dfIItST~QE 479 (550)
T PF00862_consen 470 DFIITSTYQE 479 (550)
T ss_dssp SEEEESSHHH
T ss_pred CEEEEcchHh
Confidence 9999987543
No 275
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=20.19 E-value=4.7e+02 Score=26.37 Aligned_cols=78 Identities=10% Similarity=0.023 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCc-cHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHc-CeEEE
Q 001292 429 DYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDG-YNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMA-DIVLY 506 (1106)
Q Consensus 429 g~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~Gper-Y~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaA-DVfV~ 506 (1106)
|...+++++++ ...++++++.+-... +...+..++++.+++ +.+.+..+++..+.+.. .+.++
T Consensus 34 G~~~v~kaikk------------gkakLVilA~D~s~~~i~~~~~~lc~~~~Vp---~~~~~tk~eLG~a~Gk~~~~svv 98 (122)
T PRK04175 34 GTNETTKAVER------------GIAKLVVIAEDVDPEEIVAHLPLLCEEKKIP---YVYVPSKKDLGKAAGLEVGAAAA 98 (122)
T ss_pred cHHHHHHHHHc------------CCccEEEEeCCCChHHHHHHHHHHHHHcCCC---EEEECCHHHHHHHhCCCCCeEEE
Confidence 56667777731 234666777776442 347889999999887 78888889999999876 44444
Q ss_pred ccCCCCCCCcHHHHHHH
Q 001292 507 GSSQVEQGFPSLIVRAM 523 (1106)
Q Consensus 507 PS~~EeEGFGlvLLEAM 523 (1106)
.-.- +||.-.+++-|
T Consensus 99 aI~d--~g~a~~~~~~~ 113 (122)
T PRK04175 99 AIVD--AGKAKELVEDI 113 (122)
T ss_pred EEec--hhhhHHHHHHH
Confidence 4322 36665555443
No 276
>PRK10494 hypothetical protein; Provisional
Probab=20.05 E-value=5.1e+02 Score=29.31 Aligned_cols=81 Identities=15% Similarity=0.174 Sum_probs=54.6
Q ss_pred CCCeEEEEEEcC-CC---CccHHHHHHHHHHcCCCCCcEEEcC----Chhh---HHHHHHHcCeEEEccCCCCCCCcHHH
Q 001292 451 EGSFKFVFLCGN-ST---DGYNDALQEVASRLGLLEHSVRHYG----FNGD---VNGVLLMADIVLYGSSQVEQGFPSLI 519 (1106)
Q Consensus 451 ~PdikfLIIVG~-Gp---erY~eeLkeLaeklGL~d~rV~flG----~~eD---L~~LyaaADVfV~PS~~EeEGFGlvL 519 (1106)
++..+ +++.|. +. ....+.+++++.++|++...|..-+ +.++ ..+++....+++++|.+ +.+-+.
T Consensus 119 ~~~~~-ii~SGg~~~~~~~sEA~~~~~~l~~lGVp~~~Ii~e~~s~nT~eNa~~~~~~~~~~~iiLVTsa~---Hm~RA~ 194 (259)
T PRK10494 119 NPGAK-LIFTGGAAKTNTVSTAEVGARVAQSLGVPREDIITLDLPKDTEEEAAAVKQAIGDAPFLLVTSAS---HLPRAM 194 (259)
T ss_pred CCCCE-EEEECCCCCCCCCCHHHHHHHHHHHcCCCHHHeeeCCCCCCHHHHHHHHHHHhCCCCEEEECCHH---HHHHHH
Confidence 35556 566664 21 1124666888889999875676665 1133 44566666689999876 778888
Q ss_pred HHHHHhCCCEEecCCC
Q 001292 520 VRAMTFGIPVITPDFP 535 (1106)
Q Consensus 520 LEAMA~G~PVIASD~g 535 (1106)
..+-..|+.||...++
T Consensus 195 ~~f~~~Gl~v~p~Ptd 210 (259)
T PRK10494 195 IFFQQEGLNPLPAPAN 210 (259)
T ss_pred HHHHHcCCceeecCCc
Confidence 8888999999876543
Done!