Query 001292
Match_columns 1106
No_of_seqs 312 out of 2311
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 20:38:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001292.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001292hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fro_A GLGA glycogen synthase; 100.0 2.4E-35 8E-40 332.0 38.0 354 221-608 1-433 (439)
2 3c48_A Predicted glycosyltrans 100.0 9.3E-34 3.2E-38 321.8 41.1 360 218-611 16-431 (438)
3 2x6q_A Trehalose-synthase TRET 100.0 1.9E-33 6.3E-38 318.2 35.8 339 220-606 38-415 (416)
4 3okp_A GDP-mannose-dependent a 100.0 1.9E-33 6.6E-38 312.6 32.4 349 221-616 3-390 (394)
5 2r60_A Glycosyl transferase, g 100.0 4.1E-33 1.4E-37 324.1 36.0 360 222-612 7-466 (499)
6 2jjm_A Glycosyl transferase, g 100.0 4.1E-33 1.4E-37 313.2 34.0 347 221-608 14-388 (394)
7 1rzu_A Glycogen synthase 1; gl 100.0 1.9E-33 6.5E-38 324.9 30.0 353 223-611 1-481 (485)
8 2qzs_A Glycogen synthase; glyc 100.0 5.1E-33 1.8E-37 321.2 30.3 350 223-609 1-480 (485)
9 2iw1_A Lipopolysaccharide core 100.0 1.7E-32 6E-37 303.3 26.4 343 223-606 1-372 (374)
10 3oy2_A Glycosyltransferase B73 100.0 5E-31 1.7E-35 297.6 32.7 337 223-610 1-395 (413)
11 2gek_A Phosphatidylinositol ma 100.0 2.5E-31 8.4E-36 297.4 27.3 339 220-609 18-387 (406)
12 3vue_A GBSS-I, granule-bound s 100.0 8.9E-30 3E-34 303.3 30.9 357 219-606 6-512 (536)
13 3s28_A Sucrose synthase 1; gly 100.0 3.3E-29 1.1E-33 310.6 33.6 353 221-605 277-769 (816)
14 2iuy_A Avigt4, glycosyltransfe 100.0 1.9E-29 6.4E-34 278.1 23.0 301 222-608 3-338 (342)
15 1f0k_A MURG, UDP-N-acetylgluco 99.9 1.5E-25 5.1E-30 248.3 28.7 312 222-607 6-359 (364)
16 2x0d_A WSAF; GT4 family, trans 99.9 1.6E-26 5.4E-31 266.5 17.4 325 220-597 44-402 (413)
17 2vsy_A XCC0866; transferase, g 99.9 2.3E-25 7.7E-30 262.8 24.5 322 219-608 202-562 (568)
18 2xci_A KDO-transferase, 3-deox 99.9 4.4E-25 1.5E-29 250.8 20.7 301 205-591 40-365 (374)
19 1vgv_A UDP-N-acetylglucosamine 99.9 8E-25 2.7E-29 244.1 18.6 335 223-607 1-378 (384)
20 3beo_A UDP-N-acetylglucosamine 99.9 3.4E-24 1.1E-28 238.0 21.4 328 222-602 8-373 (375)
21 2hy7_A Glucuronosyltransferase 99.9 3E-24 1E-28 246.0 17.9 250 283-611 124-385 (406)
22 2bfw_A GLGA glycogen synthase; 99.9 1.6E-23 5.4E-28 213.6 17.4 186 379-590 2-199 (200)
23 3nb0_A Glycogen [starch] synth 99.9 7.3E-22 2.5E-26 237.7 29.5 303 282-608 180-636 (725)
24 1uqt_A Alpha, alpha-trehalose- 99.9 6.8E-22 2.3E-26 232.9 27.4 286 283-605 123-454 (482)
25 1v4v_A UDP-N-acetylglucosamine 99.9 7.6E-22 2.6E-26 220.2 16.2 327 223-607 6-366 (376)
26 3qhp_A Type 1 capsular polysac 99.9 4.7E-21 1.6E-25 190.0 17.0 159 411-595 2-164 (166)
27 2f9f_A First mannosyl transfer 99.8 1.1E-20 3.9E-25 191.3 15.2 145 405-571 17-165 (177)
28 3t5t_A Putative glycosyltransf 99.8 6.4E-19 2.2E-23 207.7 25.8 285 283-605 149-473 (496)
29 3dzc_A UDP-N-acetylglucosamine 99.8 6.6E-18 2.3E-22 193.5 20.7 313 223-584 26-380 (396)
30 3ot5_A UDP-N-acetylglucosamine 99.7 2.7E-17 9.3E-22 189.1 19.4 331 222-608 27-394 (403)
31 3otg_A CALG1; calicheamicin, T 99.7 8.1E-17 2.8E-21 181.5 21.4 326 214-603 12-408 (412)
32 3s2u_A UDP-N-acetylglucosamine 99.7 5.9E-15 2E-19 167.1 29.5 313 221-602 1-355 (365)
33 3rhz_A GTF3, nucleotide sugar 99.7 1.1E-14 3.9E-19 164.4 26.1 288 229-591 19-322 (339)
34 2iyf_A OLED, oleandomycin glyc 99.6 1.2E-14 4.1E-19 165.5 25.0 321 223-602 8-398 (430)
35 4fzr_A SSFS6; structural genom 99.6 4.8E-15 1.6E-19 167.3 18.1 318 219-598 12-395 (398)
36 3tsa_A SPNG, NDP-rhamnosyltran 99.6 8.3E-15 2.8E-19 164.5 18.7 318 222-602 1-387 (391)
37 3ia7_A CALG4; glycosysltransfe 99.6 2.2E-13 7.4E-18 152.5 25.9 321 223-604 5-399 (402)
38 3rsc_A CALG2; TDP, enediyne, s 99.5 1E-12 3.5E-17 148.6 27.4 328 219-603 17-413 (415)
39 3oti_A CALG3; calicheamicin, T 99.5 4.7E-13 1.6E-17 151.3 23.3 319 219-602 17-396 (398)
40 4hwg_A UDP-N-acetylglucosamine 99.5 1.4E-12 4.9E-17 149.4 23.0 307 223-583 10-354 (385)
41 2p6p_A Glycosyl transferase; X 99.4 4E-11 1.4E-15 134.4 26.0 161 410-603 210-379 (384)
42 2iya_A OLEI, oleandomycin glyc 99.2 5E-09 1.7E-13 119.3 30.1 132 452-602 283-420 (424)
43 2yjn_A ERYCIII, glycosyltransf 99.2 4.9E-10 1.7E-14 128.8 20.7 161 410-602 267-434 (441)
44 3q3e_A HMW1C-like glycosyltran 99.1 1.2E-09 4E-14 131.6 21.7 224 351-606 388-624 (631)
45 4amg_A Snogd; transferase, pol 99.0 4.1E-08 1.4E-12 110.1 22.6 84 479-572 285-372 (400)
46 2o6l_A UDP-glucuronosyltransfe 98.9 4.2E-09 1.4E-13 105.4 11.3 131 409-572 20-158 (170)
47 4gyw_A UDP-N-acetylglucosamine 98.9 1.2E-07 4.1E-12 117.0 26.4 182 402-606 514-706 (723)
48 1iir_A Glycosyltransferase GTF 98.8 6.5E-07 2.2E-11 102.0 26.8 157 410-608 238-401 (415)
49 3h4t_A Glycosyltransferase GTF 98.8 1.9E-07 6.5E-12 106.5 19.5 138 410-584 221-364 (404)
50 1rrv_A Glycosyltransferase GTF 98.7 3.2E-06 1.1E-10 96.2 26.8 139 411-584 238-382 (416)
51 2gj4_A Glycogen phosphorylase, 97.8 0.00045 1.6E-08 85.6 20.4 149 401-558 538-707 (824)
52 1l5w_A Maltodextrin phosphoryl 97.8 0.00013 4.4E-09 90.1 14.9 189 402-607 515-732 (796)
53 3hbm_A UDP-sugar hydrolase; PS 97.8 0.00046 1.6E-08 76.1 17.4 66 456-533 186-251 (282)
54 2c4m_A Glycogen phosphorylase; 97.8 0.00023 7.9E-09 87.9 16.0 190 402-607 505-721 (796)
55 3hbf_A Flavonoid 3-O-glucosylt 97.0 0.0043 1.5E-07 72.7 14.1 195 345-569 207-415 (454)
56 2acv_A Triterpene UDP-glucosyl 96.9 0.0099 3.4E-07 69.4 15.4 122 454-586 307-444 (463)
57 2c1x_A UDP-glucose flavonoid 3 96.9 0.004 1.4E-07 72.6 11.7 80 484-570 326-414 (456)
58 2pq6_A UDP-glucuronosyl/UDP-gl 96.6 0.023 7.9E-07 66.4 15.8 80 484-570 354-441 (482)
59 3tov_A Glycosyl transferase fa 96.6 0.27 9.3E-06 55.1 23.5 110 400-532 174-286 (349)
60 2vch_A Hydroquinone glucosyltr 96.4 0.031 1.1E-06 65.5 15.4 95 485-584 341-448 (480)
61 2jzc_A UDP-N-acetylglucosamine 96.0 0.0057 2E-07 65.4 5.3 73 484-565 115-196 (224)
62 3l7i_A Teichoic acid biosynthe 95.4 0.095 3.3E-06 64.5 13.7 224 315-568 435-683 (729)
63 1psw_A ADP-heptose LPS heptosy 94.4 0.21 7.1E-06 54.9 11.7 114 398-532 167-286 (348)
64 2gt1_A Lipopolysaccharide hept 88.3 1.5 5E-05 47.9 9.7 139 405-568 173-322 (326)
65 1k68_A Phytochrome response re 85.0 6 0.00021 36.1 10.6 108 457-567 5-130 (140)
66 3kht_A Response regulator; PSI 83.7 5.7 0.0002 37.0 10.0 110 454-567 6-127 (144)
67 3heb_A Response regulator rece 83.5 6.3 0.00022 37.2 10.3 108 457-567 7-134 (152)
68 2zay_A Response regulator rece 83.2 8.1 0.00028 36.0 10.9 112 453-570 8-130 (147)
69 3cg4_A Response regulator rece 82.0 11 0.00037 34.8 11.2 109 453-567 7-126 (142)
70 3h1g_A Chemotaxis protein CHEY 81.6 11 0.00036 34.6 10.8 108 457-568 8-127 (129)
71 3jte_A Response regulator rece 80.6 8.7 0.0003 35.6 10.0 109 457-570 6-125 (143)
72 1qkk_A DCTD, C4-dicarboxylate 80.3 11 0.00039 35.5 10.9 109 457-570 6-123 (155)
73 1k66_A Phytochrome response re 80.2 8.8 0.0003 35.5 9.9 108 457-567 9-137 (149)
74 3cnb_A DNA-binding response re 80.0 12 0.00042 34.3 10.8 112 454-570 9-132 (143)
75 3hzh_A Chemotaxis response reg 79.9 8.6 0.00029 36.7 9.9 106 457-567 39-156 (157)
76 3h5i_A Response regulator/sens 79.0 26 0.00088 32.4 12.7 108 457-568 8-124 (140)
77 1jbe_A Chemotaxis protein CHEY 79.0 14 0.0005 33.3 10.7 109 454-567 5-124 (128)
78 3ilh_A Two component response 78.8 8 0.00027 35.8 9.1 111 457-570 12-141 (146)
79 2qsj_A DNA-binding response re 78.7 7.4 0.00025 36.7 8.9 112 454-570 4-126 (154)
80 2qvg_A Two component response 75.9 16 0.00056 33.6 10.3 109 457-568 10-135 (143)
81 4e7p_A Response regulator; DNA 75.8 13 0.00044 35.0 9.7 113 454-570 21-142 (150)
82 3eul_A Possible nitrate/nitrit 75.3 15 0.00051 34.6 10.0 116 452-571 14-138 (152)
83 3grc_A Sensor protein, kinase; 75.3 25 0.00087 32.2 11.5 111 454-570 7-129 (140)
84 3hdv_A Response regulator; PSI 75.2 18 0.0006 33.2 10.3 109 457-570 10-129 (136)
85 1i3c_A Response regulator RCP1 75.0 16 0.00055 34.4 10.2 111 453-567 8-136 (149)
86 3gt7_A Sensor protein; structu 74.8 15 0.0005 35.0 9.9 111 454-570 8-129 (154)
87 1ygp_A Yeast glycogen phosphor 73.0 33 0.0011 43.2 14.4 141 409-558 598-766 (879)
88 1mb3_A Cell division response 72.9 27 0.00091 31.2 10.7 107 457-568 4-121 (124)
89 3f6c_A Positive transcription 72.0 24 0.00081 32.1 10.2 110 457-570 4-122 (134)
90 3t6k_A Response regulator rece 71.9 22 0.00076 32.9 10.2 109 457-570 7-126 (136)
91 1dbw_A Transcriptional regulat 71.8 24 0.00083 31.8 10.2 108 457-569 6-122 (126)
92 2r25_B Osmosensing histidine p 71.3 29 0.001 31.9 10.8 108 457-568 5-127 (133)
93 3nhm_A Response regulator; pro 71.3 38 0.0013 30.6 11.5 108 457-570 7-124 (133)
94 2pln_A HP1043, response regula 71.1 21 0.00072 32.8 9.8 106 453-568 18-133 (137)
95 4dad_A Putative pilus assembly 71.0 8.5 0.00029 35.9 7.0 111 453-569 20-142 (146)
96 3gl9_A Response regulator; bet 70.8 26 0.00088 31.8 10.2 106 457-567 5-121 (122)
97 3kcn_A Adenylate cyclase homol 70.3 59 0.002 30.4 12.9 108 457-570 7-125 (151)
98 3cg0_A Response regulator rece 69.7 34 0.0012 31.2 10.9 111 453-568 9-128 (140)
99 2rjn_A Response regulator rece 69.6 22 0.00076 33.4 9.7 110 453-568 7-126 (154)
100 3hdg_A Uncharacterized protein 69.5 20 0.0007 32.8 9.3 110 454-569 8-126 (137)
101 2gkg_A Response regulator homo 68.7 34 0.0012 30.3 10.4 108 457-569 8-126 (127)
102 1mvo_A PHOP response regulator 68.2 61 0.0021 29.3 12.2 110 457-571 6-124 (136)
103 3eod_A Protein HNR; response r 67.9 22 0.00074 32.3 9.0 110 454-569 8-127 (130)
104 2qv0_A Protein MRKE; structura 67.9 49 0.0017 30.4 11.6 110 454-568 10-127 (143)
105 2rdm_A Response regulator rece 67.7 42 0.0014 30.2 10.9 107 457-570 8-125 (132)
106 3n53_A Response regulator rece 67.3 30 0.001 31.8 10.0 107 457-569 6-123 (140)
107 3crn_A Response regulator rece 66.7 35 0.0012 31.2 10.2 106 457-567 6-120 (132)
108 1s8n_A Putative antiterminator 66.5 71 0.0024 31.6 13.2 108 457-569 16-132 (205)
109 2qr3_A Two-component system re 66.4 27 0.00092 31.9 9.4 110 457-570 6-128 (140)
110 2pl1_A Transcriptional regulat 66.3 48 0.0016 29.3 10.8 106 457-567 3-117 (121)
111 2a9o_A Response regulator; ess 66.1 44 0.0015 29.5 10.5 107 457-568 4-118 (120)
112 3i42_A Response regulator rece 65.7 39 0.0013 30.4 10.2 108 457-569 6-123 (127)
113 2j48_A Two-component sensor ki 65.2 17 0.00057 31.8 7.4 106 457-567 4-117 (119)
114 3m6m_D Sensory/regulatory prot 65.1 29 0.001 32.4 9.5 109 454-568 15-136 (143)
115 1zgz_A Torcad operon transcrip 65.1 30 0.001 30.8 9.3 106 457-567 5-118 (122)
116 1ys7_A Transcriptional regulat 65.0 63 0.0022 32.5 12.7 108 454-567 8-124 (233)
117 3to5_A CHEY homolog; alpha(5)b 64.7 45 0.0015 32.2 10.8 110 453-567 12-132 (134)
118 2qzj_A Two-component response 64.6 29 0.00098 32.1 9.3 107 457-568 7-121 (136)
119 3cfy_A Putative LUXO repressor 64.4 37 0.0013 31.4 10.0 106 457-567 7-121 (137)
120 3f6p_A Transcriptional regulat 64.2 38 0.0013 30.4 9.8 106 457-567 5-118 (120)
121 1p6q_A CHEY2; chemotaxis, sign 63.7 21 0.00074 32.2 8.0 107 457-567 9-126 (129)
122 3lua_A Response regulator rece 63.0 10 0.00036 35.0 5.8 110 457-570 7-129 (140)
123 3hv2_A Response regulator/HD d 62.7 26 0.00089 33.0 8.7 111 454-570 15-135 (153)
124 2gwr_A DNA-binding response re 62.6 50 0.0017 33.7 11.5 106 457-567 8-121 (238)
125 1tmy_A CHEY protein, TMY; chem 62.3 40 0.0014 29.9 9.5 106 457-566 5-119 (120)
126 1xhf_A DYE resistance, aerobic 61.6 45 0.0015 29.7 9.8 106 457-567 6-119 (123)
127 3lte_A Response regulator; str 61.5 33 0.0011 31.0 8.9 109 457-570 9-127 (132)
128 2qxy_A Response regulator; reg 61.4 22 0.00076 32.7 7.8 109 457-571 7-124 (142)
129 3c97_A Signal transduction his 61.0 54 0.0018 30.1 10.4 108 457-569 13-131 (140)
130 3cz5_A Two-component response 60.9 29 0.00099 32.5 8.7 112 454-571 6-128 (153)
131 3r0j_A Possible two component 60.6 51 0.0017 34.0 11.2 109 453-567 23-140 (250)
132 3b2n_A Uncharacterized protein 59.8 45 0.0016 30.4 9.6 110 457-569 6-124 (133)
133 1srr_A SPO0F, sporulation resp 57.1 42 0.0014 30.0 8.7 106 457-567 6-120 (124)
134 1yio_A Response regulatory pro 56.0 53 0.0018 32.5 10.0 107 457-568 7-122 (208)
135 3mm4_A Histidine kinase homolo 54.5 73 0.0025 32.0 10.9 111 454-571 62-199 (206)
136 3a10_A Response regulator; pho 54.3 87 0.003 27.4 10.3 105 457-566 4-115 (116)
137 2b4a_A BH3024; flavodoxin-like 53.4 68 0.0023 29.3 9.7 109 452-569 14-132 (138)
138 3c3m_A Response regulator rece 52.7 94 0.0032 28.4 10.6 109 457-570 6-125 (138)
139 1dcf_A ETR1 protein; beta-alph 52.3 56 0.0019 29.8 8.9 112 454-571 8-132 (136)
140 3rqi_A Response regulator prot 52.1 28 0.00094 34.3 7.1 106 457-567 10-124 (184)
141 2hqr_A Putative transcriptiona 51.7 38 0.0013 34.1 8.3 102 457-567 3-114 (223)
142 3cu5_A Two component transcrip 51.2 71 0.0024 29.5 9.5 108 457-567 5-122 (141)
143 2ayx_A Sensor kinase protein R 51.0 1.1E+02 0.0038 31.8 12.0 109 453-567 129-246 (254)
144 2jba_A Phosphate regulon trans 50.9 23 0.00078 31.8 5.8 107 457-568 5-122 (127)
145 3l49_A ABC sugar (ribose) tran 50.4 1.3E+02 0.0043 31.3 12.3 90 220-322 3-92 (291)
146 1kgs_A DRRD, DNA binding respo 50.2 73 0.0025 31.8 10.1 106 457-567 5-119 (225)
147 3tb6_A Arabinose metabolism tr 49.9 1.3E+02 0.0043 31.2 12.2 67 220-291 13-79 (298)
148 3g1w_A Sugar ABC transporter; 49.0 1.1E+02 0.0036 32.2 11.5 86 221-322 3-92 (305)
149 1dz3_A Stage 0 sporulation pro 47.7 65 0.0022 29.1 8.5 109 457-569 5-124 (130)
150 1rcu_A Conserved hypothetical 47.5 13 0.00045 38.8 3.9 70 492-566 110-193 (195)
151 3kto_A Response regulator rece 45.1 19 0.00066 33.1 4.4 109 457-570 9-128 (136)
152 1zh2_A KDP operon transcriptio 44.3 84 0.0029 27.6 8.5 106 457-567 4-117 (121)
153 2lpm_A Two-component response 44.1 47 0.0016 31.7 7.0 108 454-566 9-120 (123)
154 3snk_A Response regulator CHEY 40.8 18 0.00061 33.3 3.4 106 457-567 17-132 (135)
155 4had_A Probable oxidoreductase 40.1 70 0.0024 35.0 8.7 68 452-532 47-116 (350)
156 1p2f_A Response regulator; DRR 39.6 43 0.0015 33.6 6.3 105 457-567 5-116 (220)
157 3e61_A Putative transcriptiona 39.3 1.3E+02 0.0044 30.9 10.2 85 221-322 7-92 (277)
158 3t8y_A CHEB, chemotaxis respon 38.5 2.6E+02 0.0088 26.5 11.5 114 453-570 25-157 (164)
159 3uuw_A Putative oxidoreductase 38.3 48 0.0017 35.7 6.9 67 452-532 30-96 (308)
160 3uug_A Multiple sugar-binding 38.2 2.6E+02 0.009 29.4 12.7 84 222-322 3-90 (330)
161 2oqr_A Sensory transduction pr 37.8 61 0.0021 32.6 7.2 106 457-567 7-120 (230)
162 1qo0_D AMIR; binding protein, 35.9 1.6E+02 0.0055 28.7 9.8 104 457-569 15-126 (196)
163 3jy6_A Transcriptional regulat 35.5 2.1E+02 0.0071 29.5 11.1 87 220-322 5-91 (276)
164 3kyj_B CHEY6 protein, putative 35.2 63 0.0022 29.8 6.3 100 457-560 16-127 (145)
165 3moi_A Probable dehydrogenase; 35.1 90 0.0031 35.0 8.7 67 452-532 26-94 (387)
166 3o74_A Fructose transport syst 35.0 2E+02 0.0067 29.3 10.7 84 222-322 2-88 (272)
167 3q9s_A DNA-binding response re 34.7 84 0.0029 32.6 7.8 107 457-568 40-154 (249)
168 3ksm_A ABC-type sugar transpor 34.5 1.6E+02 0.0054 30.1 9.9 84 223-322 1-90 (276)
169 3m9w_A D-xylose-binding peripl 34.3 1.8E+02 0.0063 30.5 10.6 84 222-322 2-89 (313)
170 4fb5_A Probable oxidoreductase 34.2 55 0.0019 36.0 6.6 67 452-531 55-123 (393)
171 3l6u_A ABC-type sugar transpor 34.0 1.7E+02 0.0059 30.2 10.2 85 221-322 7-95 (293)
172 3h75_A Periplasmic sugar-bindi 33.5 2.2E+02 0.0074 30.6 11.2 92 221-325 2-95 (350)
173 2ixa_A Alpha-N-acetylgalactosa 33.5 73 0.0025 36.5 7.7 73 452-531 43-120 (444)
174 1a04_A Nitrate/nitrite respons 32.4 1.8E+02 0.006 28.9 9.5 111 454-569 6-126 (215)
175 3luf_A Two-component system re 32.1 2.6E+02 0.009 29.1 11.3 110 453-568 124-245 (259)
176 3e9m_A Oxidoreductase, GFO/IDH 31.2 1.3E+02 0.0044 32.9 8.9 55 469-532 41-97 (330)
177 1dc7_A NTRC, nitrogen regulati 31.0 33 0.0011 30.4 3.5 106 457-567 6-120 (124)
178 3n0r_A Response regulator; sig 30.4 3.9E+02 0.013 28.5 12.4 107 457-570 163-279 (286)
179 3d02_A Putative LACI-type tran 30.2 3E+02 0.01 28.5 11.3 89 222-322 4-92 (303)
180 1kjn_A MTH0777; hypotethical p 29.9 89 0.003 31.5 6.4 39 222-260 6-44 (157)
181 3k4h_A Putative transcriptiona 29.3 3.6E+02 0.012 27.7 11.7 85 221-322 7-98 (292)
182 3rc1_A Sugar 3-ketoreductase; 29.2 93 0.0032 34.4 7.4 67 452-532 51-119 (350)
183 1e2b_A Enzyme IIB-cellobiose; 27.8 85 0.0029 29.2 5.7 71 455-530 5-79 (106)
184 1ny5_A Transcriptional regulat 27.4 2.8E+02 0.0094 31.2 11.0 108 457-569 3-119 (387)
185 1ydw_A AX110P-like protein; st 27.3 1.3E+02 0.0045 33.1 8.2 71 452-532 29-101 (362)
186 2l2q_A PTS system, cellobiose- 27.1 2.2E+02 0.0075 26.2 8.5 97 453-567 4-104 (109)
187 1w25_A Stalked-cell differenti 26.6 3.1E+02 0.01 30.8 11.3 106 457-567 4-120 (459)
188 8abp_A L-arabinose-binding pro 26.6 2.8E+02 0.0095 28.8 10.3 64 222-291 2-65 (306)
189 3u7r_A NADPH-dependent FMN red 26.4 1.1E+02 0.0036 31.5 6.6 41 222-262 2-42 (190)
190 4h3v_A Oxidoreductase domain p 25.8 2.8E+02 0.0095 30.2 10.5 55 469-532 49-105 (390)
191 3egc_A Putative ribose operon 25.7 2.3E+02 0.0077 29.4 9.3 87 221-322 7-93 (291)
192 3v5n_A Oxidoreductase; structu 25.7 1.3E+02 0.0043 34.2 7.9 57 469-532 77-140 (417)
193 2fn9_A Ribose ABC transporter, 25.6 3.1E+02 0.011 28.2 10.4 65 221-290 1-65 (290)
194 3e3m_A Transcriptional regulat 25.5 6.5E+02 0.022 27.0 18.9 106 190-322 48-155 (355)
195 2vzf_A NADH-dependent FMN redu 24.5 3.1E+02 0.011 27.3 9.8 42 223-264 3-46 (197)
196 3nbm_A PTS system, lactose-spe 24.3 96 0.0033 29.1 5.4 77 453-535 6-87 (108)
197 3hs3_A Ribose operon repressor 24.1 4.6E+02 0.016 26.9 11.3 82 221-322 9-91 (277)
198 3evn_A Oxidoreductase, GFO/IDH 24.1 1.2E+02 0.004 33.1 6.9 68 452-532 28-97 (329)
199 3dty_A Oxidoreductase, GFO/IDH 23.9 1.3E+02 0.0044 33.8 7.4 56 469-531 52-114 (398)
200 2iz6_A Molybdenum cofactor car 23.5 26 0.00089 35.9 1.4 79 485-568 91-174 (176)
201 2fep_A Catabolite control prot 22.9 6.4E+02 0.022 26.0 12.5 85 221-322 15-101 (289)
202 3db2_A Putative NADPH-dependen 22.9 1.2E+02 0.0042 33.2 6.9 67 452-532 28-96 (354)
203 3klo_A Transcriptional regulat 22.6 2.5E+02 0.0085 28.1 8.7 111 454-570 8-131 (225)
204 3cea_A MYO-inositol 2-dehydrog 22.5 1.8E+02 0.0062 31.6 8.1 68 452-532 32-101 (346)
205 3q2i_A Dehydrogenase; rossmann 21.2 2.3E+02 0.008 31.0 8.7 67 452-532 37-105 (354)
206 2dri_A D-ribose-binding protei 21.0 3.5E+02 0.012 27.7 9.6 40 222-261 1-40 (271)
207 3ehd_A Uncharacterized conserv 21.0 1.5E+02 0.005 30.0 6.3 67 496-566 65-161 (162)
208 3rot_A ABC sugar transporter, 20.7 2.9E+02 0.0098 28.8 8.9 66 221-290 2-68 (297)
209 3h5o_A Transcriptional regulat 20.5 5E+02 0.017 27.6 11.0 106 190-322 40-147 (339)
210 3gbv_A Putative LACI-family tr 20.2 3.2E+02 0.011 28.1 9.2 68 221-292 7-78 (304)
211 1xmp_A PURE, phosphoribosylami 20.1 4.7E+02 0.016 26.7 9.7 114 452-572 12-149 (170)
No 1
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=2.4e-35 Score=332.03 Aligned_cols=354 Identities=13% Similarity=0.109 Sum_probs=275.6
Q ss_pred CCCEEEEEeCCCC---CChhHHHHHHHHHHHHHCCCEEEEEEcCCCCch-------------------------------
Q 001292 221 RPPRIGLILGNMA---KDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSH------------------------------- 266 (1106)
Q Consensus 221 r~~RIalVlg~L~---~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~------------------------------- 266 (1106)
|++||++|+..+. .||.+..+..++++|+++||+|+|++.......
T Consensus 1 r~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~ 80 (439)
T 3fro_A 1 RHMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEEIGKIRVFGEEVQVKVSYEERGNLRIYRI 80 (439)
T ss_dssp CCCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEEECTTCSCCEEEEEEEETTEEEEEEEEEEEETTEEEEEE
T ss_pred CceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEecCCCCchhhhhccccccCcccceeeeeccCCCceEEEe
Confidence 5789999998854 499999999999999999999999995322110
Q ss_pred ----------------H-HHH---HHhHHHHHhh-----ccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEE
Q 001292 267 ----------------S-LWE---QIAGQISILG-----QEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVW 321 (1106)
Q Consensus 267 ----------------~-i~r---~lg~lvkiIr-----~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~ 321 (1106)
. ..+ ........++ ..++|+||++.+...++..+..+. .++|+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~----------~~~~~v~ 150 (439)
T 3fro_A 81 GGGLLDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHTVFAGALIKKY----------FKIPAVF 150 (439)
T ss_dssp ESGGGGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGGGHHHHHHHHHH----------HCCCEEE
T ss_pred cchhccccccccCCcchhhhhhHHHHHHHHHHHHHHhccCCCCeEEEecchhhhhhHHHHhhc----------cCCCEEE
Confidence 0 111 1111223333 459999999988877766666543 5799999
Q ss_pred EEcCCcccccchhhh-hhhHH-----hHHHHHHHHhccccEEEecCCChhhhhc---CCCCCCEEEeCCCCCCccccccc
Q 001292 322 IIQEDSLANRLPVYV-ERGFQ-----NLLSYWKSVFSRVNVIVFPDYTLPMLYS---VLDAGNFFVIPGSPADVWAVEAY 392 (1106)
Q Consensus 322 tIHna~Ls~r~~~Y~-~~gle-----klis~~~~~l~~AD~VIa~S~~~~~~~~---gi~~~KI~VIpN~GVDl~~~e~F 392 (1106)
++|+.........+. ...+. .........++.+|.+++.|........ ..+..++.+||| |+|. +.|
T Consensus 151 ~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~~~~~~~~~~i~vi~n-gvd~---~~~ 226 (439)
T 3fro_A 151 TIHRLNKSKLPAFYFHEAGLSELAPYPDIDPEHTGGYIADIVTTVSRGYLIDEWGFFRNFEGKITYVFN-GIDC---SFW 226 (439)
T ss_dssp EESCCCCCCEEHHHHHHTTCGGGCCSSEECHHHHHHHHCSEEEESCHHHHHHTHHHHGGGTTSEEECCC-CCCT---TTS
T ss_pred EecccccccCchHHhCccccccccccceeeHhhhhhhhccEEEecCHHHHHHHhhhhhhcCCceeecCC-CCCc---hhc
Confidence 999964221111000 00000 0001223457799999999976655522 367789999998 8998 566
Q ss_pred Ccc-------hhHHHHHHHcCCCCCcEEEEEEcccC-ccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCC
Q 001292 393 SKS-------HEKYQLRKENGFLKDEIVVVVVGSSF-FYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNST 464 (1106)
Q Consensus 393 ~ps-------~s~~~LR~~lGL~~d~~VIL~VGRl~-~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~Gp 464 (1106)
.+. ..+..++++++++++ ++|+++|++. . .||++.+++|++.+.++ ...++++ |+|+|.++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~G~~~~~----~Kg~~~li~a~~~l~~~-----~~~~~~~-l~i~G~g~ 295 (439)
T 3fro_A 227 NESYLTGSRDERKKSLLSKFGMDEG-VTFMFIGRFDRG----QKGVDVLLKAIEILSSK-----KEFQEMR-FIIIGKGD 295 (439)
T ss_dssp CGGGSCSCHHHHHHHHHHHHTCCSC-EEEEEECCSSCT----TBCHHHHHHHHHHHHTS-----GGGGGEE-EEEECCCC
T ss_pred CcccccchhhhhHHHHHHHcCCCCC-cEEEEEcccccc----cccHHHHHHHHHHHHhc-----ccCCCeE-EEEEcCCC
Confidence 543 246778999999877 9999999988 7 89999999999877531 1116787 68999999
Q ss_pred CccHHHHHHHHHHcCCCCCcEEEcC--ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhc
Q 001292 465 DGYNDALQEVASRLGLLEHSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVA 542 (1106)
Q Consensus 465 erY~eeLkeLaeklGL~d~rV~flG--~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~ 542 (1106)
..|.+.+++++++++ + .|.|.| +.+++..+|+.||++|+||..| +||++++||||||+|||+++.+++.|++.
T Consensus 296 ~~~~~~l~~~~~~~~--~-~~~~~g~~~~~~~~~~~~~adv~v~ps~~e--~~~~~~~EAma~G~Pvi~s~~~~~~e~~~ 370 (439)
T 3fro_A 296 PELEGWARSLEEKHG--N-VKVITEMLSREFVRELYGSVDFVIIPSYFE--PFGLVALEAMCLGAIPIASAVGGLRDIIT 370 (439)
T ss_dssp HHHHHHHHHHHHHCT--T-EEEECSCCCHHHHHHHHTTCSEEEECBSCC--SSCHHHHHHHHTTCEEEEESSTHHHHHCC
T ss_pred hhHHHHHHHHHhhcC--C-EEEEcCCCCHHHHHHHHHHCCEEEeCCCCC--CccHHHHHHHHCCCCeEEcCCCCcceeEE
Confidence 777799999999888 4 899999 5688999999999999999986 99999999999999999999999999998
Q ss_pred cCCeEEEEcCCCHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcC
Q 001292 543 EGAQVIFFQKDNPEGLSRAFSLFIS-NGKLSKFARTVASAGRLHAKNMLALDCVTRYARILENVLNF 608 (1106)
Q Consensus 543 Dg~nG~LV~~~D~eeLAeAI~~LLs-DpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLyeslLk~ 608 (1106)
++ +|++++++|+++|+++|.++++ |++. +.+|++++++.++++.|+..+++|.++|+++++.
T Consensus 371 ~~-~g~~~~~~d~~~la~~i~~ll~~~~~~---~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 433 (439)
T 3fro_A 371 NE-TGILVKAGDPGELANAILKALELSRSD---LSKFRENCKKRAMSFSWEKSAERYVKAYTGSIDR 433 (439)
T ss_dssp TT-TCEEECTTCHHHHHHHHHHHHHHTTTT---THHHHHHHHHHHHTSCHHHHHHHHHHHHHTCSCC
T ss_pred cC-ceEEeCCCCHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHh
Confidence 87 9999999999999999999999 8888 5899999999997777788888999999998764
No 2
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=9.3e-34 Score=321.77 Aligned_cols=360 Identities=18% Similarity=0.198 Sum_probs=269.8
Q ss_pred CCCCCCEEEEEeCCCC---------CChhHHHHHHHHHHHHHCCCEEEEEEcCCCCc-----------------------
Q 001292 218 FGVRPPRIGLILGNMA---------KDSRSLLLITVVKNLQKLGYVFKIYAVRSGNS----------------------- 265 (1106)
Q Consensus 218 ~g~r~~RIalVlg~L~---------~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~----------------------- 265 (1106)
.+.+.+||++|...+. .||.+..+..++++|.++||+|+|++...+..
T Consensus 16 ~~~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~ 95 (438)
T 3c48_A 16 PRGSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQGEIVRVAENLRVINIAAGPYEG 95 (438)
T ss_dssp ---CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEECCCGGGCSEEEEETTEEEEEECCSCSSS
T ss_pred cCcchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEecCCCCCCcccccccCCeEEEEecCCCccc
Confidence 3556689999998764 38999999999999999999999998754210
Q ss_pred ---hHHH----HHHhHHHHH-hhcc-CccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchh--
Q 001292 266 ---HSLW----EQIAGQISI-LGQE-QYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPV-- 334 (1106)
Q Consensus 266 ---~~i~----r~lg~lvki-Ir~~-~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~-- 334 (1106)
...+ .....+.+. ++.. ++|+||.+.+...++..+..+. .++|+|+++|+.........
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~----------~~~p~v~~~h~~~~~~~~~~~~ 165 (438)
T 3c48_A 96 LSKEELPTQLAAFTGGMLSFTRREKVTYDLIHSHYWLSGQVGWLLRDL----------WRIPLIHTAHTLAAVKNSYRDD 165 (438)
T ss_dssp CCGGGGGGGHHHHHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHHHH----------HTCCEEEECSSCHHHHSCC---
T ss_pred cchhHHHHHHHHHHHHHHHHHHhccCCCCEEEeCCccHHHHHHHHHHH----------cCCCEEEEecCCcccccccccc
Confidence 0001 011112222 3333 4999999876655554444432 47899999999532111000
Q ss_pred --hhhhhHHhHHHHHHHHhccccEEEecCCChhhh---hcCCCCCCEEEeCCCCCCcccccccCcch--hHHHHHHHcCC
Q 001292 335 --YVERGFQNLLSYWKSVFSRVNVIVFPDYTLPML---YSVLDAGNFFVIPGSPADVWAVEAYSKSH--EKYQLRKENGF 407 (1106)
Q Consensus 335 --Y~~~gleklis~~~~~l~~AD~VIa~S~~~~~~---~~gi~~~KI~VIpN~GVDl~~~e~F~ps~--s~~~LR~~lGL 407 (1106)
........ ......++.+|.|++.+...... ..+++..++.+||| |+|. +.|.+.. ....+|+++++
T Consensus 166 ~~~~~~~~~~--~~~~~~~~~~d~ii~~s~~~~~~~~~~~g~~~~k~~vi~n-gvd~---~~~~~~~~~~~~~~r~~~~~ 239 (438)
T 3c48_A 166 SDTPESEARR--ICEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISVVSP-GADV---ELYSPGNDRATERSRRELGI 239 (438)
T ss_dssp -CCHHHHHHH--HHHHHHHHHCSEEEESSHHHHHHHHHHHCCCGGGEEECCC-CCCT---TTSCCC----CHHHHHHTTC
T ss_pred cCCcchHHHH--HHHHHHHhcCCEEEEcCHHHHHHHHHHhCCChhheEEecC-Cccc---cccCCcccchhhhhHHhcCC
Confidence 00000011 11234578899999999766554 25677789999998 7987 5565532 22347889999
Q ss_pred CCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcC----CCCccHHHHHHHHHHcCCCCC
Q 001292 408 LKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGN----STDGYNDALQEVASRLGLLEH 483 (1106)
Q Consensus 408 ~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~----GperY~eeLkeLaeklGL~d~ 483 (1106)
+++.++|+++|++.. .||++.+++|+..+.++. .+.+++ |+|+|. |+.. +.++++++++++.+
T Consensus 240 ~~~~~~i~~~G~~~~----~Kg~~~li~a~~~l~~~~-----p~~~~~-l~i~G~~~~~g~~~--~~l~~~~~~~~l~~- 306 (438)
T 3c48_A 240 PLHTKVVAFVGRLQP----FKGPQVLIKAVAALFDRD-----PDRNLR-VIICGGPSGPNATP--DTYRHMAEELGVEK- 306 (438)
T ss_dssp CSSSEEEEEESCBSG----GGCHHHHHHHHHHHHHHC-----TTCSEE-EEEECCBC--------CHHHHHHHHTTCTT-
T ss_pred CCCCcEEEEEeeecc----cCCHHHHHHHHHHHHhhC-----CCcceE-EEEEeCCCCCCcHH--HHHHHHHHHcCCCC-
Confidence 889999999999887 899999999998886432 012677 688898 6644 89999999999987
Q ss_pred cEEEcCCh--hhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHH
Q 001292 484 SVRHYGFN--GDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRA 561 (1106)
Q Consensus 484 rV~flG~~--eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeA 561 (1106)
+|.|+|+. +++..+|+.||++|+||..| +||++++||||||+|||+++.+++.|++.++.+|+++++.|+++|+++
T Consensus 307 ~v~~~g~~~~~~~~~~~~~adv~v~ps~~e--~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~ 384 (438)
T 3c48_A 307 RIRFLDPRPPSELVAVYRAADIVAVPSFNE--SFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADA 384 (438)
T ss_dssp TEEEECCCCHHHHHHHHHHCSEEEECCSCC--SSCHHHHHHHHTTCCEEEESCTTHHHHSCBTTTEEEESSCCHHHHHHH
T ss_pred cEEEcCCCChHHHHHHHHhCCEEEECcccc--CCchHHHHHHHcCCCEEecCCCChhHHhhCCCcEEECCCCCHHHHHHH
Confidence 99999976 78999999999999999886 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCCC
Q 001292 562 FSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILENVLNFPSD 611 (1106)
Q Consensus 562 I~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLyeslLk~Ps~ 611 (1106)
|.++++|+++ +.+|++++++.++++.|+..+++|.++|++++..+..
T Consensus 385 i~~l~~~~~~---~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3c48_A 385 LATLLDDDET---RIRMGEDAVEHARTFSWAATAAQLSSLYNDAIANENV 431 (438)
T ss_dssp HHHHHHCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHcCHHH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhccc
Confidence 9999999987 6889999999999965677777999999999886543
No 3
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=1.9e-33 Score=318.22 Aligned_cols=339 Identities=12% Similarity=0.118 Sum_probs=258.9
Q ss_pred CCCCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCc-hHH--------------------HHH----HhH
Q 001292 220 VRPPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNS-HSL--------------------WEQ----IAG 274 (1106)
Q Consensus 220 ~r~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~-~~i--------------------~r~----lg~ 274 (1106)
.+++||+++.+....||.+..+..+++.|.+.||+|++++...... ... +.. ...
T Consensus 38 ~~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (416)
T 2x6q_A 38 LKGRSFVHVNSTSFGGGVAEILHSLVPLLRSIGIEARWFVIEGPTEFFNVTKTFHNALQGNESLKLTEEMKELYLNVNRE 117 (416)
T ss_dssp TTTCEEEEEESCSSSSTHHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHHHHHTTCCSCCCCHHHHHHHHHHHHH
T ss_pred hhccEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCcchhhhhcccceeecccccccccHHHHHHHHHHHHH
Confidence 4678999999998889999999999999999999999988764321 000 000 001
Q ss_pred HHHHhhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccc
Q 001292 275 QISILGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRV 354 (1106)
Q Consensus 275 lvkiIr~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~A 354 (1106)
+.+.++..++|+||++.+....+..+. ...+|+|+++|+....... .........+..+
T Consensus 118 ~~~~l~~~~~Dvv~~~~~~~~~~~~~~------------~~~~p~v~~~h~~~~~~~~---------~~~~~~~~~~~~~ 176 (416)
T 2x6q_A 118 NSKFIDLSSFDYVLVHDPQPAALIEFY------------EKKSPWLWRCHIDLSSPNR---------EFWEFLRRFVEKY 176 (416)
T ss_dssp HHHSSCGGGSSEEEEESSTTGGGGGGS------------CCCSCEEEECCSCCSSCCH---------HHHHHHHHHHTTS
T ss_pred HHHHHhhcCCCEEEEeccchhhHHHHH------------HhcCCEEEEEccccCCccH---------HHHHHHHHHHHhC
Confidence 233455668999999876543222111 1348999999985322110 1111123345677
Q ss_pred cEEEe-cCCChhhhhcCCCCCCEEEeCCCCCCcccccccCc----chhHHHHHHHcCCCCCcEEEEEEcccCccccccCC
Q 001292 355 NVIVF-PDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSK----SHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWD 429 (1106)
Q Consensus 355 D~VIa-~S~~~~~~~~gi~~~KI~VIpN~GVDl~~~e~F~p----s~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg 429 (1106)
|.+++ .+.... ..++..++.+||| |+|. ..+.+ ......+|++++++++.++|+++||+.+ .||
T Consensus 177 ~~~i~~~s~~~~---~~~~~~~~~vi~n-gvd~---~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~----~Kg 245 (416)
T 2x6q_A 177 DRYIFHLPEYVQ---PELDRNKAVIMPP-SIDP---LSEKNVELKQTEILRILERFDVDPEKPIITQVSRFDP----WKG 245 (416)
T ss_dssp SEEEESSGGGSC---TTSCTTTEEECCC-CBCT---TSTTTSCCCHHHHHHHHHHTTCCTTSCEEEEECCCCT----TSC
T ss_pred CEEEEechHHHH---hhCCccceEEeCC-CCCh---hhhcccccChhhHHHHHHHhCCCCCCcEEEEEecccc----ccC
Confidence 77664 443222 2345578999998 7987 33332 1245678899999989999999999887 899
Q ss_pred HHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCc---cHHHHHHHHHHcCCCCCcEEEcCCh-----hhHHHHHHHc
Q 001292 430 YAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDG---YNDALQEVASRLGLLEHSVRHYGFN-----GDVNGVLLMA 501 (1106)
Q Consensus 430 ~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~Gper---Y~eeLkeLaeklGL~d~rV~flG~~-----eDL~~LyaaA 501 (1106)
++.+++|++.+.++ .|+++ |+|+|+++.. +.+.++++++++++.+ +|.|+|+. +++..+|+.|
T Consensus 246 ~~~li~a~~~l~~~-------~~~~~-l~i~G~g~~~~~~~~~~l~~~~~~~~~~~-~V~~~G~~~~~~~~~~~~~~~~a 316 (416)
T 2x6q_A 246 IFDVIEIYRKVKEK-------IPGVQ-LLLVGVMAHDDPEGWIYFEKTLRKIGEDY-DVKVLTNLIGVHAREVNAFQRAS 316 (416)
T ss_dssp HHHHHHHHHHHHHH-------CTTCE-EEEEECCCTTCHHHHHHHHHHHHHHTTCT-TEEEEEGGGTCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh-------CCCeE-EEEEecCcccchhHHHHHHHHHHHhCCCC-cEEEecccCCCCHHHHHHHHHhC
Confidence 99999999887643 27888 6889998742 2467899999999987 99999954 3899999999
Q ss_pred CeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHH
Q 001292 502 DIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASA 581 (1106)
Q Consensus 502 DVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~ 581 (1106)
|++|+||..| +||++++||||||+|||+++.++++|++.++.+|++++ |+++|+++|..+++|++. +++|+++
T Consensus 317 d~~v~ps~~E--~~~~~~lEAma~G~PvI~~~~~g~~e~i~~~~~g~l~~--d~~~la~~i~~ll~~~~~---~~~~~~~ 389 (416)
T 2x6q_A 317 DVILQMSIRE--GFGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLVR--DANEAVEVVLYLLKHPEV---SKEMGAK 389 (416)
T ss_dssp SEEEECCSSC--SSCHHHHHHHHTTCCEEEESCHHHHHHCCBTTTEEEES--SHHHHHHHHHHHHHCHHH---HHHHHHH
T ss_pred CEEEECCCcC--CCccHHHHHHHcCCCEEEccCCCChhheecCCCeEEEC--CHHHHHHHHHHHHhCHHH---HHHHHHH
Confidence 9999999986 99999999999999999999999999999999999997 999999999999999987 6889999
Q ss_pred HHHHHHH-hcHHHHHHHHHHHHHHHh
Q 001292 582 GRLHAKN-MLALDCVTRYARILENVL 606 (1106)
Q Consensus 582 Are~ake-~fsee~v~~Y~eLyeslL 606 (1106)
+++.+.+ +.|+..+.+|.++|++++
T Consensus 390 a~~~~~~~fs~~~~~~~~~~~~~~l~ 415 (416)
T 2x6q_A 390 AKERVRKNFIITKHMERYLDILNSLG 415 (416)
T ss_dssp HHHHHHHHTBHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHhh
Confidence 9999975 456677779999998765
No 4
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=1.9e-33 Score=312.57 Aligned_cols=349 Identities=13% Similarity=0.122 Sum_probs=268.1
Q ss_pred CCCEEEEEeCCCC--CChhHHHHHHHHHHHHHCCCEEEEEEcCCCCch-HH--------------------HHHHhHHHH
Q 001292 221 RPPRIGLILGNMA--KDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSH-SL--------------------WEQIAGQIS 277 (1106)
Q Consensus 221 r~~RIalVlg~L~--~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~-~i--------------------~r~lg~lvk 277 (1106)
+++||++|.+.+. .||.+..+..+++.| .|++|+|++....... .. ......+.+
T Consensus 3 ~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (394)
T 3okp_A 3 ASRKTLVVTNDFPPRIGGIQSYLRDFIATQ--DPESIVVFASTQNAEEAHAYDKTLDYEVIRWPRSVMLPTPTTAHAMAE 80 (394)
T ss_dssp -CCCEEEEESCCTTSCSHHHHHHHHHHTTS--CGGGEEEEEECSSHHHHHHHHTTCSSEEEEESSSSCCSCHHHHHHHHH
T ss_pred CCceEEEEeCccCCccchHHHHHHHHHHHh--cCCeEEEEECCCCccchhhhccccceEEEEccccccccchhhHHHHHH
Confidence 4689999999776 599999999999999 6999999998654320 11 112233677
Q ss_pred HhhccCccEEEEccccHHH-HHHHHHHHhhhhcccCCCCCCc-EEEEEcCCcccccchhhhhhhHHhHHHHHHHHhcccc
Q 001292 278 ILGQEQYSLIDWSIFDGII-ADSLEAKEAISSLMQEPFHSIP-LVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVN 355 (1106)
Q Consensus 278 iIr~~~pDiIh~~~~~~i~-v~~La~k~~idII~te~~~gIP-VI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD 355 (1106)
+++..++|+||++...... +..+..+ .++| +|+++|+...... .. ..........++.+|
T Consensus 81 ~~~~~~~Dvv~~~~~~~~~~~~~~~~~-----------~~~~~~i~~~h~~~~~~~-~~------~~~~~~~~~~~~~~d 142 (394)
T 3okp_A 81 IIREREIDNVWFGAAAPLALMAGTAKQ-----------AGASKVIASTHGHEVGWS-ML------PGSRQSLRKIGTEVD 142 (394)
T ss_dssp HHHHTTCSEEEESSCTTGGGGHHHHHH-----------TTCSEEEEECCSTHHHHT-TS------HHHHHHHHHHHHHCS
T ss_pred HHHhcCCCEEEECCcchHHHHHHHHHh-----------cCCCcEEEEeccchhhhh-hc------chhhHHHHHHHHhCC
Confidence 7888899999997654432 2223221 4565 8889998633111 00 111112334678999
Q ss_pred EEEecCCChhhhh--cCCCCCCEEEeCCCCCCcccccccCc-c-hhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHH
Q 001292 356 VIVFPDYTLPMLY--SVLDAGNFFVIPGSPADVWAVEAYSK-S-HEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYA 431 (1106)
Q Consensus 356 ~VIa~S~~~~~~~--~gi~~~KI~VIpN~GVDl~~~e~F~p-s-~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~d 431 (1106)
.+++.|....... ......++.+||| |+|. +.|.+ . .....+++.++++++.++|+++|++.. .||++
T Consensus 143 ~ii~~s~~~~~~~~~~~~~~~~~~vi~n-gv~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~----~Kg~~ 214 (394)
T 3okp_A 143 VLTYISQYTLRRFKSAFGSHPTFEHLPS-GVDV---KRFTPATPEDKSATRKKLGFTDTTPVIACNSRLVP----RKGQD 214 (394)
T ss_dssp EEEESCHHHHHHHHHHHCSSSEEEECCC-CBCT---TTSCCCCHHHHHHHHHHTTCCTTCCEEEEESCSCG----GGCHH
T ss_pred EEEEcCHHHHHHHHHhcCCCCCeEEecC-CcCH---HHcCCCCchhhHHHHHhcCCCcCceEEEEEecccc----ccCHH
Confidence 9999997666552 1224578999998 7998 66665 3 345778999999988899999999877 89999
Q ss_pred HHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCCh--hhHHHHHHHcCeEEEccC
Q 001292 432 VAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFN--GDVNGVLLMADIVLYGSS 509 (1106)
Q Consensus 432 lLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~--eDL~~LyaaADVfV~PS~ 509 (1106)
.+++|++.+.++ +|+++ |+|+|+++.. +.+++++ .++.+ +|.|+|+. +++..+|+.||++|+||.
T Consensus 215 ~li~a~~~l~~~-------~~~~~-l~i~G~g~~~--~~l~~~~--~~~~~-~v~~~g~~~~~~~~~~~~~ad~~v~ps~ 281 (394)
T 3okp_A 215 SLIKAMPQVIAA-------RPDAQ-LLIVGSGRYE--STLRRLA--TDVSQ-NVKFLGRLEYQDMINTLAAADIFAMPAR 281 (394)
T ss_dssp HHHHHHHHHHHH-------STTCE-EEEECCCTTH--HHHHHHT--GGGGG-GEEEEESCCHHHHHHHHHHCSEEEECCC
T ss_pred HHHHHHHHHHhh-------CCCeE-EEEEcCchHH--HHHHHHH--hcccC-eEEEcCCCCHHHHHHHHHhCCEEEecCc
Confidence 999999887643 27888 6889999865 8888888 57766 99999977 899999999999999999
Q ss_pred C-------CCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHH
Q 001292 510 Q-------VEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAG 582 (1106)
Q Consensus 510 ~-------EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~A 582 (1106)
. | +||++++||||+|+|||+++.+++.|++.++ +|++++++|+++|+++|.++++|++. +.++++++
T Consensus 282 ~~~~~~~~e--~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~~~~~~---~~~~~~~~ 355 (394)
T 3okp_A 282 TRGGGLDVE--GLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVVEGSDVDKLSELLIELLDDPIR---RAAMGAAG 355 (394)
T ss_dssp CBGGGTBCC--SSCHHHHHHHHTTCCEEECSSTTGGGGCCTT-TEEECCTTCHHHHHHHHHHHHTCHHH---HHHHHHHH
T ss_pred ccccccccc--ccCcHHHHHHHcCCCEEEeCCCChHHHHhcC-CceEeCCCCHHHHHHHHHHHHhCHHH---HHHHHHHH
Confidence 8 6 9999999999999999999999999999998 99999999999999999999999987 68999999
Q ss_pred HHHHHHh-cHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 001292 583 RLHAKNM-LALDCVTRYARILENVLNFPSDALLPG 616 (1106)
Q Consensus 583 re~ake~-fsee~v~~Y~eLyeslLk~Ps~a~~P~ 616 (1106)
++.+.+. .|+..+.+|.++|+++.........|.
T Consensus 356 ~~~~~~~~s~~~~~~~~~~~~~~~~r~~~~~~~~~ 390 (394)
T 3okp_A 356 RAHVEAEWSWEIMGERLTNILQSEPRKLAAALEHH 390 (394)
T ss_dssp HHHHHHHTBHHHHHHHHHHHHHSCCC---------
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhccCcchhhhhh
Confidence 9999875 566777799999999877665555554
No 5
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=4.1e-33 Score=324.09 Aligned_cols=360 Identities=11% Similarity=0.077 Sum_probs=271.7
Q ss_pred CCEEEEEeCCC-------------CCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCch----------------------
Q 001292 222 PPRIGLILGNM-------------AKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSH---------------------- 266 (1106)
Q Consensus 222 ~~RIalVlg~L-------------~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~---------------------- 266 (1106)
++||++|.... ..||.+..+..++++|.++||+|+|++.......
T Consensus 7 ~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~ 86 (499)
T 2r60_A 7 IKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIITRRIKDENWPEFSGEIDYYQETNKVRIVRI 86 (499)
T ss_dssp CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEEECCCBTTBGGGCCSEEECTTCSSEEEEEE
T ss_pred cceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcCCeEEEEeCCCCcccccchhhhHHhccCCCCeEEEEe
Confidence 57999999764 4589999999999999999999999986432100
Q ss_pred -----------HHHH----HHhHHHHHhhc--cCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCccc
Q 001292 267 -----------SLWE----QIAGQISILGQ--EQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLA 329 (1106)
Q Consensus 267 -----------~i~r----~lg~lvkiIr~--~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls 329 (1106)
..+. ....+.++++. .++|+||.|.+...++..+..+. .++|+|+++|+....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~Divh~~~~~~~~~~~~~~~~----------~~~p~v~~~H~~~~~ 156 (499)
T 2r60_A 87 PFGGDKFLPKEELWPYLHEYVNKIINFYREEGKFPQVVTTHYGDGGLAGVLLKNI----------KGLPFTFTGHSLGAQ 156 (499)
T ss_dssp CCSCSSCCCGGGCGGGHHHHHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHHHH----------HCCCEEEECSSCHHH
T ss_pred cCCCcCCcCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHh----------cCCcEEEEccCcccc
Confidence 0111 11124455665 48999999987655555444432 478999999995321
Q ss_pred ccchh-------hhhhhHH---hHHHHHHHHhccccEEEecCCChhhhh-----cC-C----CCCCEEEeCCCCCCcccc
Q 001292 330 NRLPV-------YVERGFQ---NLLSYWKSVFSRVNVIVFPDYTLPMLY-----SV-L----DAGNFFVIPGSPADVWAV 389 (1106)
Q Consensus 330 ~r~~~-------Y~~~gle---klis~~~~~l~~AD~VIa~S~~~~~~~-----~g-i----~~~KI~VIpN~GVDl~~~ 389 (1106)
..... ....... .........++.+|.|+++|....... .+ + +..++.|||| |+|.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~g~~~~~~~~~ki~vi~n-gvd~--- 232 (499)
T 2r60_A 157 KMEKLNVNTSNFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQERFGQYSHDLYRGAVNVEDDDKFSVIPP-GVNT--- 232 (499)
T ss_dssp HHHTTCCCSTTSHHHHHHHCHHHHHHHHHHHHHHCSEEEESSHHHHHHTTTSGGGTTTCCTTCGGGEEECCC-CBCT---
T ss_pred cchhhccCCCCcchhhhhHHHHHHHHHHHHHHhcCCEEEECCHHHHHHHHhhhcccccccccCCCCeEEECC-CcCh---
Confidence 10000 0000000 011112346789999999997766542 23 4 5678999998 7997
Q ss_pred cccCcch---hHHHHHHHcC-----CCCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEc
Q 001292 390 EAYSKSH---EKYQLRKENG-----FLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCG 461 (1106)
Q Consensus 390 e~F~ps~---s~~~LR~~lG-----L~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG 461 (1106)
+.|.+.. .+..+|+++| ++++.++|+++||+.+ .||++.+++|++.+.++.. ..++ |+|+|
T Consensus 233 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~i~~vGrl~~----~Kg~~~li~a~~~l~~~~~------~~~~-l~i~G 301 (499)
T 2r60_A 233 RVFDGEYGDKIKAKITKYLERDLGSERMELPAIIASSRLDQ----KKNHYGLVEAYVQNKELQD------KANL-VLTLR 301 (499)
T ss_dssp TTSSSCCCHHHHHHHHHHHHHHSCGGGTTSCEEEECSCCCG----GGCHHHHHHHHHTCHHHHH------HCEE-EEEES
T ss_pred hhcCccchhhhHHHHHHHhcccccccCCCCcEEEEeecCcc----ccCHHHHHHHHHHHHHhCC------CceE-EEEEC
Confidence 5665542 2467788888 7788899999999887 8999999999998875431 1234 68888
Q ss_pred C--CC----C-------ccHHHHHHHHHHcCCCCCcEEEcCCh--hhHHHHHHHc----CeEEEccCCCCCCCcHHHHHH
Q 001292 462 N--ST----D-------GYNDALQEVASRLGLLEHSVRHYGFN--GDVNGVLLMA----DIVLYGSSQVEQGFPSLIVRA 522 (1106)
Q Consensus 462 ~--Gp----e-------rY~eeLkeLaeklGL~d~rV~flG~~--eDL~~LyaaA----DVfV~PS~~EeEGFGlvLLEA 522 (1106)
. ++ . .|.++++++++++|+.+ +|+|+|+. +++..+|+.| |++|+||..| +||++++||
T Consensus 302 ~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~-~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~~E--g~~~~~lEA 378 (499)
T 2r60_A 302 GIENPFEDYSRAGQEEKEILGKIIELIDNNDCRG-KVSMFPLNSQQELAGCYAYLASKGSVFALTSFYE--PFGLAPVEA 378 (499)
T ss_dssp SCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBT-TEEEEECCSHHHHHHHHHHHHHTTCEEEECCSCB--CCCSHHHHH
T ss_pred CCCCcccccccccccchHHHHHHHHHHHhcCCCc-eEEECCCCCHHHHHHHHHhcCcCCCEEEECcccC--CCCcHHHHH
Confidence 8 33 1 12589999999999987 99999975 8999999999 9999999986 999999999
Q ss_pred HHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHH
Q 001292 523 MTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKN-MLALDCVTRYARI 601 (1106)
Q Consensus 523 MA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake-~fsee~v~~Y~eL 601 (1106)
||||+|||+++.+++.|++.++.+|++++++|+++|+++|.++++|+++ +.+|++++++.+.+ +.|+..+.+|.++
T Consensus 379 ma~G~PvI~s~~~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~~~~~---~~~~~~~a~~~~~~~fs~~~~~~~~~~~ 455 (499)
T 2r60_A 379 MASGLPAVVTRNGGPAEILDGGKYGVLVDPEDPEDIARGLLKAFESEET---WSAYQEKGKQRVEERYTWQETARGYLEV 455 (499)
T ss_dssp HHTTCCEEEESSBHHHHHTGGGTSSEEECTTCHHHHHHHHHHHHSCHHH---HHHHHHHHHHHHHHHSBHHHHHHHHHHH
T ss_pred HHcCCCEEEecCCCHHHHhcCCceEEEeCCCCHHHHHHHHHHHHhCHHH---HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987 68899999999988 5566777799999
Q ss_pred HHHHhcCCCCC
Q 001292 602 LENVLNFPSDA 612 (1106)
Q Consensus 602 yeslLk~Ps~a 612 (1106)
|++++......
T Consensus 456 y~~~~~~~~~~ 466 (499)
T 2r60_A 456 IQEIADRKDEE 466 (499)
T ss_dssp HHHHHHC----
T ss_pred HHHHHhhhhhh
Confidence 99998865433
No 6
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=4.1e-33 Score=313.16 Aligned_cols=347 Identities=15% Similarity=0.153 Sum_probs=261.0
Q ss_pred CCCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCc------------------------hHHHHHHhHHH
Q 001292 221 RPPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNS------------------------HSLWEQIAGQI 276 (1106)
Q Consensus 221 r~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~------------------------~~i~r~lg~lv 276 (1106)
+++++...... ..||.+..+..+++.|.++||+|+|++...... ...+.....+.
T Consensus 14 ~~~~~~~~~~p-~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 92 (394)
T 2jjm_A 14 MKLKIGITCYP-SVGGSGVVGTELGKQLAERGHEIHFITSGLPFRLNKVYPNIYFHEVTVNQYSVFQYPPYDLALASKMA 92 (394)
T ss_dssp -CCEEEEECCC---CHHHHHHHHHHHHHHHTTCEEEEECSSCC----CCCTTEEEECCCCC----CCSCCHHHHHHHHHH
T ss_pred heeeeehhcCC-CCCCHHHHHHHHHHHHHhCCCEEEEEeCCCCCcccccCCceEEEecccccccccccccccHHHHHHHH
Confidence 45555544332 368999999999999999999999998743210 00111222256
Q ss_pred HHhhccCccEEEEccccHH-HHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhcccc
Q 001292 277 SILGQEQYSLIDWSIFDGI-IADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVN 355 (1106)
Q Consensus 277 kiIr~~~pDiIh~~~~~~i-~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD 355 (1106)
++++..++|+||++..... +...+..+.. ..++|+|+++|+......... . .+.......++.+|
T Consensus 93 ~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~~--------~~~~p~v~~~h~~~~~~~~~~-~-----~~~~~~~~~~~~ad 158 (394)
T 2jjm_A 93 EVAQRENLDILHVHYAIPHAICAYLAKQMI--------GERIKIVTTLHGTDITVLGSD-P-----SLNNLIRFGIEQSD 158 (394)
T ss_dssp HHHHHHTCSEEEECSSTTHHHHHHHHHHHT--------TTCSEEEEECCHHHHHTTTTC-T-----TTHHHHHHHHHHSS
T ss_pred HHHHHcCCCEEEEcchhHHHHHHHHHHHhh--------cCCCCEEEEEecCcccccCCC-H-----HHHHHHHHHHhhCC
Confidence 6777789999999865543 3333333221 136899999998422100000 0 00111234567899
Q ss_pred EEEecCCChhhhh--cCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHH
Q 001292 356 VIVFPDYTLPMLY--SVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVA 433 (1106)
Q Consensus 356 ~VIa~S~~~~~~~--~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlL 433 (1106)
.+++.+....... ......++.+||| |+|. +.|.+. ....++++++++++.++|+++|++.. .||++.+
T Consensus 159 ~ii~~s~~~~~~~~~~~~~~~~~~vi~n-gv~~---~~~~~~-~~~~~~~~~~~~~~~~~i~~~G~~~~----~Kg~~~l 229 (394)
T 2jjm_A 159 VVTAVSHSLINETHELVKPNKDIQTVYN-FIDE---RVYFKR-DMTQLKKEYGISESEKILIHISNFRK----VKRVQDV 229 (394)
T ss_dssp EEEESCHHHHHHHHHHTCCSSCEEECCC-CCCT---TTCCCC-CCHHHHHHTTCC---CEEEEECCCCG----GGTHHHH
T ss_pred EEEECCHHHHHHHHHhhCCcccEEEecC-CccH---HhcCCc-chHHHHHHcCCCCCCeEEEEeecccc----ccCHHHH
Confidence 9999997765542 2222568999998 7987 556554 24567888999888899999999887 8999999
Q ss_pred HHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCC
Q 001292 434 MHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQ 513 (1106)
Q Consensus 434 LeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeE 513 (1106)
++|++.+.++ ++++ |+|+|+++.. +.++++++++++.+ +|.|.|+.+++..+|+.||++|+||..|
T Consensus 230 i~a~~~l~~~--------~~~~-l~i~G~g~~~--~~l~~~~~~~~l~~-~v~~~g~~~~~~~~~~~adv~v~ps~~e-- 295 (394)
T 2jjm_A 230 VQAFAKIVTE--------VDAK-LLLVGDGPEF--CTILQLVKNLHIED-RVLFLGKQDNVAELLAMSDLMLLLSEKE-- 295 (394)
T ss_dssp HHHHHHHHHS--------SCCE-EEEECCCTTH--HHHHHHHHTTTCGG-GBCCCBSCSCTHHHHHTCSEEEECCSCC--
T ss_pred HHHHHHHHhh--------CCCE-EEEECCchHH--HHHHHHHHHcCCCC-eEEEeCchhhHHHHHHhCCEEEeccccC--
Confidence 9999877531 3567 6889999865 99999999999987 9999999999999999999999999986
Q ss_pred CCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH-HHhcHH
Q 001292 514 GFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHA-KNMLAL 592 (1106)
Q Consensus 514 GFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~a-ke~fse 592 (1106)
+||++++||||||+|||+++.+++.|++.++.+|++++++|+++|+++|.++++|++. +.+|++++++.+ +++.++
T Consensus 296 ~~~~~~~EAma~G~PvI~~~~~~~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~~~~~---~~~~~~~~~~~~~~~~s~~ 372 (394)
T 2jjm_A 296 SFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEEL---HRNMGERARESVYEQFRSE 372 (394)
T ss_dssp SCCHHHHHHHHTTCCEEEECCTTSTTTCCBTTTEEEECTTCHHHHHHHHHHHHHCHHH---HHHHHHHHHHHHHHHSCHH
T ss_pred CCchHHHHHHhcCCCEEEecCCChHHHhhcCCceEEeCCCCHHHHHHHHHHHHcCHHH---HHHHHHHHHHHHHHhCCHH
Confidence 9999999999999999999999999999999999999999999999999999999987 688999999999 555567
Q ss_pred HHHHHHHHHHHHHhcC
Q 001292 593 DCVTRYARILENVLNF 608 (1106)
Q Consensus 593 e~v~~Y~eLyeslLk~ 608 (1106)
..+++|.++|+++++.
T Consensus 373 ~~~~~~~~~~~~~~~~ 388 (394)
T 2jjm_A 373 KIVSQYETIYYDVLRD 388 (394)
T ss_dssp HHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHhh
Confidence 7777999999998764
No 7
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=1.9e-33 Score=324.87 Aligned_cols=353 Identities=12% Similarity=0.072 Sum_probs=261.4
Q ss_pred CEEEEEeCCCC----CChhHHHHHHHHHHHHHCCCEEEEEEcCCCCch--------------------------------
Q 001292 223 PRIGLILGNMA----KDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSH-------------------------------- 266 (1106)
Q Consensus 223 ~RIalVlg~L~----~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~-------------------------------- 266 (1106)
+||++|+..+. .||.+..+..++++|.++||+|+|++.......
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v 80 (485)
T 1rzu_A 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEFTDLLGEKADLLEVQHERLDL 80 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCHHHHHHCCSCEEEEEESCSSSCCEEEEEEEETTEEE
T ss_pred CeEEEEeeeeccccccccHHHHHHHHHHHHHHcCCeEEEEecccccccccccccceeEEEEEecCCeEEEEEEEecCceE
Confidence 58999998774 589999999999999999999999986431100
Q ss_pred ------HHH--------------------H---HHhHHHHHh----hccCccEEEEccccHHHHHHHHHHHhhhhcccCC
Q 001292 267 ------SLW--------------------E---QIAGQISIL----GQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEP 313 (1106)
Q Consensus 267 ------~i~--------------------r---~lg~lvkiI----r~~~pDiIh~~~~~~i~v~~La~k~~idII~te~ 313 (1106)
..+ + ......+++ +..++|+||+|.+...++..+..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~-------- 152 (485)
T 1rzu_A 81 LILDAPAYYERSGGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLPGWRPDMVHAHDWQAAMTPVYMRYAE-------- 152 (485)
T ss_dssp EEEECHHHHCSSSCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSSSCCCSEEEEEHHHHTTHHHHHHHSS--------
T ss_pred EEEeChHHhCCCccccCCcccccccchHHHHHHHHHHHHHHHHHhccCCCCCEEEecccchhHHHHHHhhcc--------
Confidence 000 0 001122233 46789999999866554544444210
Q ss_pred CCCCcEEEEEcCCcccccchhh-------hhh-----hH--HhHHHHHHHHhccccEEEecCCChhhhhc----C-----
Q 001292 314 FHSIPLVWIIQEDSLANRLPVY-------VER-----GF--QNLLSYWKSVFSRVNVIVFPDYTLPMLYS----V----- 370 (1106)
Q Consensus 314 ~~gIPVI~tIHna~Ls~r~~~Y-------~~~-----gl--eklis~~~~~l~~AD~VIa~S~~~~~~~~----g----- 370 (1106)
..++|+|+++|+.......... +.. .. .......+..++.+|.++++|........ +
T Consensus 153 ~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~g~~~~~ 232 (485)
T 1rzu_A 153 TPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQTATALSTVSPSYAEEILTAEFGMGLEG 232 (485)
T ss_dssp SCCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHHHHCSEEEESCHHHHHHTTSHHHHTTCHH
T ss_pred cCCCCEEEEecCccccCCCCHHHHhhcCCChhhcccccccccccccHHHHHHhhcCEEEecCHhHHHHHhccccCcchHH
Confidence 2579999999995321110000 000 00 00001123456789999999976655421 2
Q ss_pred ---CCCCCEEEeCCCCCCcccccccCcch------------------hHHHHHHHcCCCCC-cEEEEEEcccCccccccC
Q 001292 371 ---LDAGNFFVIPGSPADVWAVEAYSKSH------------------EKYQLRKENGFLKD-EIVVVVVGSSFFYNELSW 428 (1106)
Q Consensus 371 ---i~~~KI~VIpN~GVDl~~~e~F~ps~------------------s~~~LR~~lGL~~d-~~VIL~VGRl~~y~kg~K 428 (1106)
.+..++.+||| |+|. +.|.+.. .+..+|+++|++++ .++|+++||+.+ .|
T Consensus 233 ~~~~~~~~~~vi~n-gvd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~vGrl~~----~K 304 (485)
T 1rzu_A 233 VIGSRAHVLHGIVN-GIDA---DVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRIDDDGSPLFCVISRLTW----QK 304 (485)
T ss_dssp HHHTTGGGEEECCC-CBCT---TTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHTCCCSSSCEEEEESCBST----TT
T ss_pred HHHhhcCCceEEcC-CCcc---cccCCcccccccccccccchhhHHHhHHHHHHhcCCCCCCCeEEEEEccCcc----cc
Confidence 35678999998 8997 5565542 25678899999875 779999999988 89
Q ss_pred CHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEE-EcCChhh-HHHHHHHcCeEEE
Q 001292 429 DYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVR-HYGFNGD-VNGVLLMADIVLY 506 (1106)
Q Consensus 429 g~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~-flG~~eD-L~~LyaaADVfV~ 506 (1106)
|++.+++|+..+.+ ++++ |+|+|+++..|.+.+++++++++ + +|. +.|...+ +..+|+.||++|+
T Consensus 305 g~~~li~a~~~l~~---------~~~~-l~ivG~g~~~~~~~l~~~~~~~~--~-~v~~~~g~~~~~~~~~~~~adv~v~ 371 (485)
T 1rzu_A 305 GIDLMAEAVDEIVS---------LGGR-LVVLGAGDVALEGALLAAASRHH--G-RVGVAIGYNEPLSHLMQAGCDAIII 371 (485)
T ss_dssp THHHHHTTHHHHHH---------TTCE-EEEEECBCHHHHHHHHHHHHHTT--T-TEEEEESCCHHHHHHHHHHCSEEEE
T ss_pred CHHHHHHHHHHHHh---------cCce-EEEEeCCchHHHHHHHHHHHhCC--C-cEEEecCCCHHHHHHHHhcCCEEEE
Confidence 99999999987753 3677 68899987545688999999875 4 787 7897655 5899999999999
Q ss_pred ccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccC---------CeEEEEcCCCHHHHHHHHHHHH---hCcccHHH
Q 001292 507 GSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEG---------AQVIFFQKDNPEGLSRAFSLFI---SNGKLSKF 574 (1106)
Q Consensus 507 PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg---------~nG~LV~~~D~eeLAeAI~~LL---sDpelRk~ 574 (1106)
||..| +||++++||||||+|||+++.+|++|++.++ .+|+++++.|+++|+++|.+++ +|+++
T Consensus 372 pS~~E--~~~~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~~~~~~--- 446 (485)
T 1rzu_A 372 PSRFE--PCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHDPKL--- 446 (485)
T ss_dssp CCSCC--SSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHHHHTCHHH---
T ss_pred CcccC--CCCHHHHHHHHCCCCEEEeCCCChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHHHHhCCHHH---
Confidence 99986 9999999999999999999999999999998 8999999999999999999999 78877
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCCC
Q 001292 575 ARTVASAGRLHAKNMLALDCVTRYARILENVLNFPSD 611 (1106)
Q Consensus 575 r~~mGe~Are~ake~fsee~v~~Y~eLyeslLk~Ps~ 611 (1106)
+.+|++++++ +++.|+..+.+|.++|++++..+..
T Consensus 447 ~~~~~~~~~~--~~fs~~~~~~~~~~~y~~~~~~~~~ 481 (485)
T 1rzu_A 447 WTQMQKLGMK--SDVSWEKSAGLYAALYSQLISKGHH 481 (485)
T ss_dssp HHHHHHHHHT--CCCBHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHH--HhCChHHHHHHHHHHHHHhhCCCCC
Confidence 5888888875 5566777778999999999876544
No 8
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=5.1e-33 Score=321.24 Aligned_cols=350 Identities=13% Similarity=0.057 Sum_probs=259.4
Q ss_pred CEEEEEeCCC----CCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCch--------------------------------
Q 001292 223 PRIGLILGNM----AKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSH-------------------------------- 266 (1106)
Q Consensus 223 ~RIalVlg~L----~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~-------------------------------- 266 (1106)
+||++|+..+ ..||.+..+..|+++|.++||+|+|++.......
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~ 80 (485)
T 2qzs_A 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRGVTDAQVVSRRDTFAGHITLLFGHYNGVGIY 80 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHHTTCEEEEEEECCHHHHHHCTTCEEEEEECCTTCCEEEEEEEETTEEEE
T ss_pred CeEEEEeeeccccccCCcHHHHHHHHHHHHHHcCCEEEEEecCccccccccccceeEEEecccCCcEEEEEEEECCcEEE
Confidence 5899999877 3589999999999999999999999986421100
Q ss_pred -----HHH--------------------H---HHhHHHHHhhc----cCccEEEEccccHHHHHHHHHHHhhhhcccCCC
Q 001292 267 -----SLW--------------------E---QIAGQISILGQ----EQYSLIDWSIFDGIIADSLEAKEAISSLMQEPF 314 (1106)
Q Consensus 267 -----~i~--------------------r---~lg~lvkiIr~----~~pDiIh~~~~~~i~v~~La~k~~idII~te~~ 314 (1106)
..+ + ....+.++++. .++|+||+|.+...++..+... . .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~~~~~~~~~-~--------~ 151 (485)
T 2qzs_A 81 LIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLGWVGAEMASGLDPFWRPDVVHAHDWHAGLAPAYLAA-R--------G 151 (485)
T ss_dssp EEECHHHHCCSSCSSBCTTSCBCTTHHHHHHHHHHHHHHHTTTSSTTCCCSEEEEETGGGTTHHHHHHH-T--------T
T ss_pred EEeChhhccCCCCccCCcccCCCCchHHHHHHHHHHHHHHHHHhccCCCCCEEEeeccchhHHHHHHhh-c--------c
Confidence 000 0 01113344443 6899999998766555444431 1 2
Q ss_pred CCCcEEEEEcCCcccccchh--h-----hhh-----h--HHhHHHHHHHHhccccEEEecCCChhhhh----cCC-----
Q 001292 315 HSIPLVWIIQEDSLANRLPV--Y-----VER-----G--FQNLLSYWKSVFSRVNVIVFPDYTLPMLY----SVL----- 371 (1106)
Q Consensus 315 ~gIPVI~tIHna~Ls~r~~~--Y-----~~~-----g--leklis~~~~~l~~AD~VIa~S~~~~~~~----~gi----- 371 (1106)
.++|+|+++|+......... . ... . ........+..++.+|.++++|....... .+.
T Consensus 152 ~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~~~~ 231 (485)
T 2qzs_A 152 RPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGL 231 (485)
T ss_dssp CSSEEEEEESCTTCCCEEEGGGGGTTTCCGGGCSTTTTEETTEEEHHHHHHHHCSEEEESSHHHHHHTTSHHHHTTCHHH
T ss_pred CCCCEEEEecCccccCCCCHHHHHhcCCCchhcccccccccccccHHHHHHHhcCeEEecCHHHHHHHhccccCcchHHH
Confidence 68999999999532111000 0 000 0 00000112345678999999997665542 222
Q ss_pred ---CC--CCEEEeCCCCCCcccccccCcch------------------hHHHHHHHcCCCC--CcEEEEEEcccCccccc
Q 001292 372 ---DA--GNFFVIPGSPADVWAVEAYSKSH------------------EKYQLRKENGFLK--DEIVVVVVGSSFFYNEL 426 (1106)
Q Consensus 372 ---~~--~KI~VIpN~GVDl~~~e~F~ps~------------------s~~~LR~~lGL~~--d~~VIL~VGRl~~y~kg 426 (1106)
+. .++.+||| |+|. +.|.+.. .+..+|+++++++ +.++|+++||+.+
T Consensus 232 ~~~~~~~~~~~vi~n-gvd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~vGrl~~---- 303 (485)
T 2qzs_A 232 LQQRHREGRLSGVLN-GVDE---KIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGLKVDDKVPLFAVVSRLTS---- 303 (485)
T ss_dssp HHHHHHTTCEEECCC-CCCT---TTSCTTTCTTSSSCCCTTCGGGGHHHHHHHHHHHTCCCCTTSCEEEEEEEESG----
T ss_pred HHhhccCCceEEEec-CCCc---cccCccccccccccccccchhHHHHhHHHHHHHcCCCCCCCCeEEEEeccCcc----
Confidence 12 68999998 8997 5565532 2567889999986 7789999999887
Q ss_pred cCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEE-EcCChhh-HHHHHHHcCeE
Q 001292 427 SWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVR-HYGFNGD-VNGVLLMADIV 504 (1106)
Q Consensus 427 ~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~-flG~~eD-L~~LyaaADVf 504 (1106)
.||++.+++|++.+.+ ++++ |+|+|.|+..+.+.+++++++++ + +|. +.|...+ +..+|+.||++
T Consensus 304 ~Kg~~~li~a~~~l~~---------~~~~-l~ivG~g~~~~~~~l~~~~~~~~--~-~v~~~~g~~~~~~~~~~~~adv~ 370 (485)
T 2qzs_A 304 QKGLDLVLEALPGLLE---------QGGQ-LALLGAGDPVLQEGFLAAAAEYP--G-QVGVQIGYHEAFSHRIMGGADVI 370 (485)
T ss_dssp GGCHHHHHHHHHHHHH---------TTCE-EEEEEEECHHHHHHHHHHHHHST--T-TEEEEESCCHHHHHHHHHHCSEE
T ss_pred ccCHHHHHHHHHHHhh---------CCcE-EEEEeCCchHHHHHHHHHHHhCC--C-cEEEeCCCCHHHHHHHHHhCCEE
Confidence 8999999999988753 3677 68899987545689999999876 4 785 8897644 58999999999
Q ss_pred EEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccC---------CeEEEEcCCCHHHHHHHHHHHH---hCcccH
Q 001292 505 LYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEG---------AQVIFFQKDNPEGLSRAFSLFI---SNGKLS 572 (1106)
Q Consensus 505 V~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg---------~nG~LV~~~D~eeLAeAI~~LL---sDpelR 572 (1106)
|+||..| +||++++||||||+|||+++.+|++|++.++ .+|++++++|+++|+++|.+++ +|+++
T Consensus 371 v~pS~~E--~~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~~~~~~- 447 (485)
T 2qzs_A 371 LVPSRFE--PCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVLWSRPSL- 447 (485)
T ss_dssp EECCSCC--SSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHHHHTSHHH-
T ss_pred EECCccC--CCcHHHHHHHHCCCCEEECCCCCccceeccCccccccccccceEEECCCCHHHHHHHHHHHHHHcCCHHH-
Confidence 9999986 9999999999999999999999999999998 8999999999999999999999 68877
Q ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCC
Q 001292 573 KFARTVASAGRLHAKNMLALDCVTRYARILENVLNFP 609 (1106)
Q Consensus 573 k~r~~mGe~Are~ake~fsee~v~~Y~eLyeslLk~P 609 (1106)
+.+|++++++ +++.|+.++++|.++|++++..+
T Consensus 448 --~~~~~~~~~~--~~fs~~~~~~~~~~ly~~~~~~~ 480 (485)
T 2qzs_A 448 --WRFVQRQAMA--MDFSWQVAAKSYRELYYRLKLEH 480 (485)
T ss_dssp --HHHHHHHHHH--CCCCHHHHHHHHHHHHHHHC---
T ss_pred --HHHHHHHHHh--hcCCHHHHHHHHHHHHHHhhhhh
Confidence 5888888874 55666777789999999986643
No 9
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=1.7e-32 Score=303.33 Aligned_cols=343 Identities=14% Similarity=0.106 Sum_probs=255.0
Q ss_pred CEEEEEeCCC-CCChhHHHHHHHHHHHHHCCCEEEEEEcCCCC-c--------------h---HHHHHHhHHHHHhhccC
Q 001292 223 PRIGLILGNM-AKDSRSLLLITVVKNLQKLGYVFKIYAVRSGN-S--------------H---SLWEQIAGQISILGQEQ 283 (1106)
Q Consensus 223 ~RIalVlg~L-~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~-~--------------~---~i~r~lg~lvkiIr~~~ 283 (1106)
+||+++.+.+ ..||.+..+..+++.|+++||+|+|++..... . . ........+.++++..+
T Consensus 1 MkIl~i~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 80 (374)
T 2iw1_A 1 MIVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCPKAFELIQVPVKSHTNHGRNAEYYAWVQNHLKEHP 80 (374)
T ss_dssp -CEEEECSEECTTCHHHHHHHHHHHHHHHTTCCEEEEESEECSCCCTTCEEEECCCCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred CeEEEEEeecCCCcchhhHHHHHHHHHHhCCCeEEEEecCCCCCCCCCcEEEEEccCcccchhhHHHHHHHHHHHHhccC
Confidence 5799998874 45899999999999999999999999875211 0 0 11112222455666778
Q ss_pred ccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHH-HHHh--ccccEEEec
Q 001292 284 YSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYW-KSVF--SRVNVIVFP 360 (1106)
Q Consensus 284 pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~-~~~l--~~AD~VIa~ 360 (1106)
+|+||.+.....+. +........+|.+++.|+... ..... .+....+ ...+ +.+|.+++.
T Consensus 81 ~Dvv~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~d~ii~~ 143 (374)
T 2iw1_A 81 ADRVVGFNKMPGLD----------VYFAADVCYAEKVAQEKGFLY-RLTSR------YRHYAAFERATFEQGKSTKLMML 143 (374)
T ss_dssp CSEEEESSCCTTCS----------EEECCSCCHHHHHHHHCCHHH-HTSHH------HHHHHHHHHHHHSTTCCCEEEES
T ss_pred CCEEEEecCCCCce----------eeeccccccceeeeecccchh-hhcHH------HHHHHHHHHHHhhccCCcEEEEc
Confidence 88888765432110 000000112222322233100 00000 0111111 1223 368999999
Q ss_pred CCChhhh---hcCCCCCCEEEeCCCCCCcccccccCcc---hhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHH
Q 001292 361 DYTLPML---YSVLDAGNFFVIPGSPADVWAVEAYSKS---HEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAM 434 (1106)
Q Consensus 361 S~~~~~~---~~gi~~~KI~VIpN~GVDl~~~e~F~ps---~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLL 434 (1106)
|...... ..+++..++.+||| |+|. +.|.+. ..+..++++++++++.++++++|++.+ .||.+.++
T Consensus 144 s~~~~~~~~~~~~~~~~~~~vi~n-gv~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~----~K~~~~li 215 (374)
T 2iw1_A 144 TDKQIADFQKHYQTEPERFQILPP-GIYP---DRKYSEQIPNSREIYRQKNGIKEQQNLLLQVGSDFG----RKGVDRSI 215 (374)
T ss_dssp CHHHHHHHHHHHCCCGGGEEECCC-CCCG---GGSGGGSCTTHHHHHHHHTTCCTTCEEEEEECSCTT----TTTHHHHH
T ss_pred CHHHHHHHHHHhCCChhheEEecC-CcCH---HhcCcccchhHHHHHHHHhCCCCCCeEEEEeccchh----hcCHHHHH
Confidence 9765554 34677789999998 7997 555443 235678999999989999999999887 89999999
Q ss_pred HHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCC
Q 001292 435 HDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQG 514 (1106)
Q Consensus 435 eA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEG 514 (1106)
+|+..+.++. +++++ |+++|.++. +.++++++++++.+ +|+|+|+.+++..+|+.||++|+||..| +
T Consensus 216 ~a~~~l~~~~------~~~~~-l~i~G~g~~---~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~ad~~v~ps~~e--~ 282 (374)
T 2iw1_A 216 EALASLPESL------RHNTL-LFVVGQDKP---RKFEALAEKLGVRS-NVHFFSGRNDVSELMAAADLLLHPAYQE--A 282 (374)
T ss_dssp HHHHTSCHHH------HHTEE-EEEESSSCC---HHHHHHHHHHTCGG-GEEEESCCSCHHHHHHHCSEEEECCSCC--S
T ss_pred HHHHHhHhcc------CCceE-EEEEcCCCH---HHHHHHHHHcCCCC-cEEECCCcccHHHHHHhcCEEEeccccC--C
Confidence 9998775431 15777 688999873 78999999999987 9999999999999999999999999986 9
Q ss_pred CcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEc-CCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHH
Q 001292 515 FPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQ-KDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALD 593 (1106)
Q Consensus 515 FGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~-~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fsee 593 (1106)
||++++||||||+|||+++.+++.+++.++.+|++++ ++|+++|+++|.++++|++. ++++++++++.++++.|..
T Consensus 283 ~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ 359 (374)
T 2iw1_A 283 AGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSPL---RMAWAENARHYADTQDLYS 359 (374)
T ss_dssp SCHHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEEECSSCCHHHHHHHHHHHHHCHHH---HHHHHHHHHHHHHHSCCSC
T ss_pred cccHHHHHHHCCCCEEEecCCCchhhhccCCceEEeCCCCCHHHHHHHHHHHHcChHH---HHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999999999999999999999998 88999999999999999987 6899999999999887777
Q ss_pred HHHHHHHHHHHHh
Q 001292 594 CVTRYARILENVL 606 (1106)
Q Consensus 594 ~v~~Y~eLyeslL 606 (1106)
..+.+.++++..+
T Consensus 360 ~~~~~~~~l~~~l 372 (374)
T 2iw1_A 360 LPEKAADIITGGL 372 (374)
T ss_dssp HHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhh
Confidence 7778888887654
No 10
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=5e-31 Score=297.58 Aligned_cols=337 Identities=13% Similarity=0.086 Sum_probs=257.5
Q ss_pred CEEEEEeCCCCC-ChhHHHHHHHHHHHHHCCCEEEEEEcCCCC----------chHHHHHH----------hHHHHHhhc
Q 001292 223 PRIGLILGNMAK-DSRSLLLITVVKNLQKLGYVFKIYAVRSGN----------SHSLWEQI----------AGQISILGQ 281 (1106)
Q Consensus 223 ~RIalVlg~L~~-gGesl~vv~LakaLqe~GyeVtV~t~~dg~----------~~~i~r~l----------g~lvkiIr~ 281 (1106)
+||++|.+.... ||.+..+..|+++|.+. |+|+|++....+ .......+ ..+.+.++.
T Consensus 1 MkI~~v~~~~p~~gG~~~~~~~l~~~L~~~-~~V~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 79 (413)
T 3oy2_A 1 MKLIIVGAHSSVPSGYGRVMRAIVPRISKA-HEVIVFGIHAFGRSVHANIEEFDAQTAEHVRGLNEQGFYYSGLSEFIDV 79 (413)
T ss_dssp CEEEEEEECTTCCSHHHHHHHHHHHHHTTT-SEEEEEEESCCSCCSCSSSEEEEHHHHHHHTTCCSTTCCHHHHHHHHHH
T ss_pred CeEEEecCCCCCCCCHHHHHHHHHHHHHhc-CCeEEEeecCCCcccccccccCCccccccccccccccchHHHHHHHHHh
Confidence 689999877654 88899999999999999 999999875422 00110000 013556677
Q ss_pred cCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhcccc--EEEe
Q 001292 282 EQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVN--VIVF 359 (1106)
Q Consensus 282 ~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD--~VIa 359 (1106)
.+||+||++.+...+...+.....+ ....+++...|......... ....++.+| .+++
T Consensus 80 ~~~Div~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~ii~ 139 (413)
T 3oy2_A 80 HKPDIVMIYNDPIVIGNYLLAMGKC-------SHRTKIVLYVDLVSKNIREN-------------LWWIFSHPKVVGVMA 139 (413)
T ss_dssp HCCSEEEEEECHHHHHHHHHHGGGC-------CSCCEEEEEECCCSBSCCGG-------------GGGGGGCTTEEEEEE
T ss_pred cCCCEEEEcchHHHHHHHHHHhccC-------CCCCceeeeccccchhhHHH-------------HHHHHhccCCceEEE
Confidence 8999999996555443333332111 11245666767643221111 123467877 9999
Q ss_pred cCCChhhhh--cCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCC--CcEEEEEEcccCccccccCCHHHHHH
Q 001292 360 PDYTLPMLY--SVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLK--DEIVVVVVGSSFFYNELSWDYAVAMH 435 (1106)
Q Consensus 360 ~S~~~~~~~--~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~--d~~VIL~VGRl~~y~kg~Kg~dlLLe 435 (1106)
.|....... .+. ..++.+||| |+|. +.| ...++.+++++ +.++|+++||+.+ .||++.+++
T Consensus 140 ~S~~~~~~~~~~~~-~~~~~vi~n-gvd~---~~~------~~~~~~~~~~~~~~~~~il~vGr~~~----~Kg~~~li~ 204 (413)
T 3oy2_A 140 MSKCWISDICNYGC-KVPINIVSH-FVDT---KTI------YDARKLVGLSEYNDDVLFLNMNRNTA----RKRLDIYVL 204 (413)
T ss_dssp SSTHHHHHHHHTTC-CSCEEECCC-CCCC---CCC------TTHHHHTTCGGGTTSEEEECCSCSSG----GGTHHHHHH
T ss_pred cCHHHHHHHHHcCC-CCceEEeCC-CCCH---HHH------HHHHHhcCCCcccCceEEEEcCCCch----hcCcHHHHH
Confidence 998766652 233 578999998 7997 444 23567788887 8999999999887 899999999
Q ss_pred HHHHhHHHHHhhccCCCCeEEEEEEcCCCCc----cHHHHHHHHHHcCCCCCc-------EEEcCCh--hhHHHHHHHcC
Q 001292 436 DVGPLLIKYARRNSVEGSFKFVFLCGNSTDG----YNDALQEVASRLGLLEHS-------VRHYGFN--GDVNGVLLMAD 502 (1106)
Q Consensus 436 A~k~Ll~k~aklk~~~PdikfLIIVG~Gper----Y~eeLkeLaeklGL~d~r-------V~flG~~--eDL~~LyaaAD 502 (1106)
|+..+.++ .|+++ |+|+|.++.. +.+.++++++++|+.+ + |.+.|.. +++..+|+.||
T Consensus 205 a~~~l~~~-------~~~~~-l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~-~v~~l~~vv~~~g~~~~~~~~~~~~~ad 275 (413)
T 3oy2_A 205 AAARFISK-------YPDAK-VRFLCNSHHESKFDLHSIALRELVASGVDN-VFTHLNKIMINRTVLTDERVDMMYNACD 275 (413)
T ss_dssp HHHHHHHH-------CTTCC-EEEEEECCTTCSCCHHHHHHHHHHHHTCSC-HHHHHTTEEEECSCCCHHHHHHHHHHCS
T ss_pred HHHHHHHh-------CCCcE-EEEEeCCcccchhhHHHHHHHHHHHcCccc-ccccccceeeccCcCCHHHHHHHHHhCC
Confidence 99887653 37887 6888888753 1388899999999997 6 8888964 68999999999
Q ss_pred eEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCe---------------EE--EEcCCCHHHHHHHHHHH
Q 001292 503 IVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQ---------------VI--FFQKDNPEGLSRAFSLF 565 (1106)
Q Consensus 503 VfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~n---------------G~--LV~~~D~eeLAeAI~~L 565 (1106)
++|+||..| +||++++||||||+|||+++.+|++|++.++.+ |+ ++++.|+++|+++| ++
T Consensus 276 v~v~pS~~E--~~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l 352 (413)
T 3oy2_A 276 VIVNCSSGE--GFGLCSAEGAVLGKPLIISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TF 352 (413)
T ss_dssp EEEECCSCC--SSCHHHHHHHTTTCCEEEECCHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HH
T ss_pred EEEeCCCcC--CCCcHHHHHHHcCCCEEEcCCCChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HH
Confidence 999999986 999999999999999999999999999998887 99 99999999999999 99
Q ss_pred HhCcccHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHhcCCC
Q 001292 566 ISNGKLSKFARTVASAGRLHAKNM-LALDCVTRYARILENVLNFPS 610 (1106)
Q Consensus 566 LsDpelRk~r~~mGe~Are~ake~-fsee~v~~Y~eLyeslLk~Ps 610 (1106)
++|++. +.+|++++++.+.+. .|+..+++|.++|+++++...
T Consensus 353 ~~~~~~---~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~~ 395 (413)
T 3oy2_A 353 FKDEKN---RKEYGKRVQDFVKTKPTWDDISSDIIDFFNSLLRVES 395 (413)
T ss_dssp TTSHHH---HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTC---
T ss_pred hcCHHH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhcC
Confidence 999987 689999999999655 556677799999999987644
No 11
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=99.98 E-value=2.5e-31 Score=297.36 Aligned_cols=339 Identities=14% Similarity=0.156 Sum_probs=256.3
Q ss_pred CCCCEEEEEeCCCCC--ChhHHHHHHHHHHHHHCCCEEEEEEcCCCCc------------hHH-----H-------HHHh
Q 001292 220 VRPPRIGLILGNMAK--DSRSLLLITVVKNLQKLGYVFKIYAVRSGNS------------HSL-----W-------EQIA 273 (1106)
Q Consensus 220 ~r~~RIalVlg~L~~--gGesl~vv~LakaLqe~GyeVtV~t~~dg~~------------~~i-----~-------r~lg 273 (1106)
.+.+||+++.+.... +|.+..+..++++|.+.||+|++++...... ... . ....
T Consensus 18 ~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (406)
T 2gek_A 18 GSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYVVSGGKAVPIPYNGSVARLRFGPATHR 97 (406)
T ss_dssp ---CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSCCCTTEEECCCCC------------CCHHHHH
T ss_pred CCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCccccCCcccccCCcEEeccccCCcccccccHHHHH
Confidence 456799999987643 8889999999999999999999998854321 000 0 0112
Q ss_pred HHHHHhhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhcc
Q 001292 274 GQISILGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSR 353 (1106)
Q Consensus 274 ~lvkiIr~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~ 353 (1106)
.+.++++..++|+||++......+..+..+. .++|+|+++|+....... . ..+...+...++.
T Consensus 98 ~l~~~l~~~~~Dii~~~~~~~~~~~~~~~~~----------~~~~~i~~~h~~~~~~~~----~---~~~~~~~~~~~~~ 160 (406)
T 2gek_A 98 KVKKWIAEGDFDVLHIHEPNAPSLSMLALQA----------AEGPIVATFHTSTTKSLT----L---SVFQGILRPYHEK 160 (406)
T ss_dssp HHHHHHHHHCCSEEEEECCCSSSHHHHHHHH----------EESSEEEEECCCCCSHHH----H---HHHHSTTHHHHTT
T ss_pred HHHHHHHhcCCCEEEECCccchHHHHHHHHh----------cCCCEEEEEcCcchhhhh----H---HHHHHHHHHHHhh
Confidence 3566677789999999776554443333321 468999999995322110 1 1111111245789
Q ss_pred ccEEEecCCChhhh-hcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEccc-CccccccCCHH
Q 001292 354 VNVIVFPDYTLPML-YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSS-FFYNELSWDYA 431 (1106)
Q Consensus 354 AD~VIa~S~~~~~~-~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl-~~y~kg~Kg~d 431 (1106)
+|.+++.+...... ...++..++ +||| |+|. +.|.+... ..+++++.++|+++|++ .. .||.+
T Consensus 161 ~d~ii~~s~~~~~~~~~~~~~~~~-vi~~-~v~~---~~~~~~~~------~~~~~~~~~~i~~~G~~~~~----~Kg~~ 225 (406)
T 2gek_A 161 IIGRIAVSDLARRWQMEALGSDAV-EIPN-GVDV---ASFADAPL------LDGYPREGRTVLFLGRYDEP----RKGMA 225 (406)
T ss_dssp CSEEEESSHHHHHHHHHHHSSCEE-ECCC-CBCH---HHHHTCCC------CTTCSCSSCEEEEESCTTSG----GGCHH
T ss_pred CCEEEECCHHHHHHHHHhcCCCcE-EecC-CCCh---hhcCCCch------hhhccCCCeEEEEEeeeCcc----ccCHH
Confidence 99999999766554 234556678 9997 7887 44433211 12334456899999998 77 89999
Q ss_pred HHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCCh--hhHHHHHHHcCeEEEccC
Q 001292 432 VAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFN--GDVNGVLLMADIVLYGSS 509 (1106)
Q Consensus 432 lLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~--eDL~~LyaaADVfV~PS~ 509 (1106)
.+++|+..+.+ .+|+++ |+|+|.++. +.++++++++ .+ +|.|.|+. .++..+|+.||++|+||.
T Consensus 226 ~li~a~~~l~~-------~~~~~~-l~i~G~~~~---~~l~~~~~~~--~~-~v~~~g~~~~~~~~~~~~~adv~v~ps~ 291 (406)
T 2gek_A 226 VLLAALPKLVA-------RFPDVE-ILIVGRGDE---DELREQAGDL--AG-HLRFLGQVDDATKASAMRSADVYCAPHL 291 (406)
T ss_dssp HHHHHHHHHHT-------TSTTCE-EEEESCSCH---HHHHHHTGGG--GG-GEEECCSCCHHHHHHHHHHSSEEEECCC
T ss_pred HHHHHHHHHHH-------HCCCeE-EEEEcCCcH---HHHHHHHHhc--cC-cEEEEecCCHHHHHHHHHHCCEEEecCC
Confidence 99999987753 237888 688999884 7788888766 44 89999966 567999999999999986
Q ss_pred -CCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Q 001292 510 -QVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKN 588 (1106)
Q Consensus 510 -~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake 588 (1106)
.| +||++++||||||+|||+++.+++.|++.++.+|++++++|+++|+++|.++++|++. +.++++++++.++.
T Consensus 292 ~~e--~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~---~~~~~~~~~~~~~~ 366 (406)
T 2gek_A 292 GGE--SFGIVLVEAMAAGTAVVASDLDAFRRVLADGDAGRLVPVDDADGMAAALIGILEDDQL---RAGYVARASERVHR 366 (406)
T ss_dssp SCC--SSCHHHHHHHHHTCEEEECCCHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHHCHHH---HHHHHHHHHHHGGG
T ss_pred CCC--CCchHHHHHHHcCCCEEEecCCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHcCHHH---HHHHHHHHHHHHHh
Confidence 65 9999999999999999999999999999999999999999999999999999999987 68899999999996
Q ss_pred hcHHHHHHHHHHHHHHHhcCC
Q 001292 589 MLALDCVTRYARILENVLNFP 609 (1106)
Q Consensus 589 ~fsee~v~~Y~eLyeslLk~P 609 (1106)
+.++..+.+|.++|++++...
T Consensus 367 ~s~~~~~~~~~~~~~~~~~~~ 387 (406)
T 2gek_A 367 YDWSVVSAQIMRVYETVSGAG 387 (406)
T ss_dssp GBHHHHHHHHHHHHHHHCCTT
T ss_pred CCHHHHHHHHHHHHHHHHhhc
Confidence 667778889999999988764
No 12
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=99.97 E-value=8.9e-30 Score=303.29 Aligned_cols=357 Identities=11% Similarity=0.084 Sum_probs=247.3
Q ss_pred CCCCCEEEEEeCCCCC----ChhHHHHHHHHHHHHHCCCEEEEEEcCCCCc-----------------------------
Q 001292 219 GVRPPRIGLILGNMAK----DSRSLLLITVVKNLQKLGYVFKIYAVRSGNS----------------------------- 265 (1106)
Q Consensus 219 g~r~~RIalVlg~L~~----gGesl~vv~LakaLqe~GyeVtV~t~~dg~~----------------------------- 265 (1106)
.-+.+||++|..++.+ ||-.-.+..|.++|+++|++|.|+++..+..
T Consensus 6 ~~~~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~P~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (536)
T 3vue_A 6 HHHHMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKR 85 (536)
T ss_dssp --CCCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCSCCTTCEEEEEEEEEEETTEEEEEEEEECEET
T ss_pred CCCCcEEEEEEEeccchhccCcHHHHHHHHHHHHHHcCCeEEEEecCchhhhhhcccceEEEEEecCceEEEEEEEEEEC
Confidence 3467999999888654 8888889999999999999999987421100
Q ss_pred ---------------------hHHH------------HHHh----HHHHHhh-------------ccCccEEEEccccHH
Q 001292 266 ---------------------HSLW------------EQIA----GQISILG-------------QEQYSLIDWSIFDGI 295 (1106)
Q Consensus 266 ---------------------~~i~------------r~lg----~lvkiIr-------------~~~pDiIh~~~~~~i 295 (1106)
..++ ..+. .....++ ...++++|+|.+.+.
T Consensus 86 gv~~y~id~~~~~~r~~~~~~~~~Y~~~~~~~~~d~~~rf~~f~~a~l~~~~~l~~~~~~~~~~~~~~ddIiH~hDW~t~ 165 (536)
T 3vue_A 86 GVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTG 165 (536)
T ss_dssp TEEEEEEECTTTTCC------------------CHHHHHHHHHHHHHHHHHHHCCCCCCTTCCSCCCSCEEEEEESGGGS
T ss_pred CceEEEecChhhhccccccCCCcccCCCccCccchHHHHHHHHHHHHHHHHHHhccccchhhhccCCCCEEEEECcchHH
Confidence 0000 0000 0111111 123468889999887
Q ss_pred HHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchh--hhhhh-------------------HHhHHHHHHHHhccc
Q 001292 296 IADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPV--YVERG-------------------FQNLLSYWKSVFSRV 354 (1106)
Q Consensus 296 ~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~--Y~~~g-------------------leklis~~~~~l~~A 354 (1106)
++..+.+.... ......++|+|+|+|+......... ....+ ....+...+..+..|
T Consensus 166 l~~~~l~~~~~---~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~k~~i~~a 242 (536)
T 3vue_A 166 PLASYLKNNYQ---PNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEA 242 (536)
T ss_dssp THHHHHHHHTT---TTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTCEEEEEHHHHHHHHC
T ss_pred HHHHHHHHhhh---hhhhhcccceeeeecCcccccccchhhhhhcCCchhhcchhhhhhcccccccccchhHHHHHHHhc
Confidence 77666553221 1111458999999998432211100 00000 000111234557789
Q ss_pred cEEEecCCChhhh-hc----------CCCCCCEEEeCCCCCCcccccccCcc-------------------hhHHHHHHH
Q 001292 355 NVIVFPDYTLPML-YS----------VLDAGNFFVIPGSPADVWAVEAYSKS-------------------HEKYQLRKE 404 (1106)
Q Consensus 355 D~VIa~S~~~~~~-~~----------gi~~~KI~VIpN~GVDl~~~e~F~ps-------------------~s~~~LR~~ 404 (1106)
|.|+++|...... .. .....++.+|+| |||. +.|.|. ..+..+++.
T Consensus 243 d~v~tVS~~~a~ei~~~~~~g~~l~~~~~~~~i~~I~N-GiD~---~~~~p~~d~~~~~~~~~~~~~~~K~~~k~~l~~~ 318 (536)
T 3vue_A 243 DRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVN-GMDV---SEWDPSKDKYITAKYDATTAIEAKALNKEALQAE 318 (536)
T ss_dssp SEEEESCHHHHHHHHTTCCCCSSSCCCSCCCSCEECCC-CCCT---TTSCTTTCSSSSCCCCTTTHHHHHHHHHHHHHHH
T ss_pred cEEEEcCHHHhhhhhcccccccccccccccCCeEEEEC-Ccch---hhcCCCCccccccccchhhhhhhhHHHHHHHHHh
Confidence 9999999665443 11 134568999998 8998 555542 124566777
Q ss_pred cCCC--CCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCC
Q 001292 405 NGFL--KDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLE 482 (1106)
Q Consensus 405 lGL~--~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d 482 (1106)
+|++ ++.++|+++||+.+ +||++.+++|+.+|.+ .+.+ ++|+|.|+..+...++.++..+ .+
T Consensus 319 ~gl~~d~~~p~i~~vgRl~~----~Kg~~~li~a~~~l~~---------~~~~-l~l~G~G~~~~~~~~~~~~~~~--~~ 382 (536)
T 3vue_A 319 AGLPVDRKIPLIAFIGRLEE----QKGPDVMAAAIPELMQ---------EDVQ-IVLLGTGKKKFEKLLKSMEEKY--PG 382 (536)
T ss_dssp TTSCCCTTSCEEEEECCBSG----GGCHHHHHHHHHHHTT---------SSCE-EEEECCBCHHHHHHHHHHHHHS--TT
T ss_pred cCCCCCCCCcEEEEEeeccc----cCChHHHHHHHHHhHh---------hCCe-EEEEeccCchHHHHHHHHHhhc--CC
Confidence 8875 56799999999998 9999999999987752 3455 5788888866556667766654 34
Q ss_pred CcEEEcC--ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEE----------EE
Q 001292 483 HSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVI----------FF 550 (1106)
Q Consensus 483 ~rV~flG--~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~----------LV 550 (1106)
+|.+.+ ..+++..+|+.||++|+||.+| +||++++||||||+|||++++||++|+|.|+++|+ ++
T Consensus 383 -~v~~~~~~~~~~~~~~~~~aD~~v~PS~~E--~fgl~~lEAma~G~PvI~s~~gG~~e~V~dg~~G~~~~~~~~~g~l~ 459 (536)
T 3vue_A 383 -KVRAVVKFNAPLAHLIMAGADVLAVPSRFE--PCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVV 459 (536)
T ss_dssp -TEEEECSCCHHHHHHHHHHCSEEEECCSCC--SSCSHHHHHHHTTCCEEECSCTHHHHHCCBTTTEEECCCCCSCTTCC
T ss_pred -ceEEEEeccHHHHHHHHHhhheeecccccC--CCCHHHHHHHHcCCCEEEcCCCCchheeeCCCCccccccCCCceeEE
Confidence 677776 4567889999999999999997 99999999999999999999999999999999998 66
Q ss_pred cCCCHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHh
Q 001292 551 QKDNPEGLSRAFSLFIS--NGKLSKFARTVASAGRLHAKNMLALDCVTRYARILENVL 606 (1106)
Q Consensus 551 ~~~D~eeLAeAI~~LLs--DpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLyeslL 606 (1106)
++.|+++|+++|.++++ +.+. .++|++++.+ ++++|++++++|+++|+++.
T Consensus 460 ~~~d~~~la~ai~ral~~~~~~~---~~~~~~~am~--~~fSW~~~A~~y~~ly~~L~ 512 (536)
T 3vue_A 460 EPSDVKKVAATLKRAIKVVGTPA---YEEMVRNCMN--QDLSWKGPAKNWENVLLGLG 512 (536)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSHH---HHHHHHHHHH--SCCSSHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCcHH---HHHHHHHHHH--hcCCHHHHHHHHHHHHHHhh
Confidence 77789999999998776 3322 4566666632 45667788889999999863
No 13
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=99.97 E-value=3.3e-29 Score=310.56 Aligned_cols=353 Identities=11% Similarity=0.070 Sum_probs=254.9
Q ss_pred CCCEEEEEeCCC-----------CCChhHHHHHH--------HHHHHHHCCCEEE----EEEcCCC--------------
Q 001292 221 RPPRIGLILGNM-----------AKDSRSLLLIT--------VVKNLQKLGYVFK----IYAVRSG-------------- 263 (1106)
Q Consensus 221 r~~RIalVlg~L-----------~~gGesl~vv~--------LakaLqe~GyeVt----V~t~~dg-------------- 263 (1106)
+..+|++|+.+- +.||+.+++.+ |+++|.++|++|+ |+|....
T Consensus 277 ~~~~i~~is~hg~~~~~~~lG~~dtGGq~vyV~e~~~al~~ela~~L~~~G~~V~~~V~v~Tr~~~~~~g~~y~~~~e~i 356 (816)
T 3s28_A 277 MVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALEIEMLQRIKQQGLNIKPRILILTRLLPDAVGTTCGERLERV 356 (816)
T ss_dssp CCCEEEEECCSSCCCSSSCTTSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECCTTCTTSSTTSSEEEC
T ss_pred ceeEEEEEcCCcccCccccCCCCCCCCceeeHHHHHHHHHHHHHHHHHHCCCccceeeEEEeCCCCCCCCCccCCcceee
Confidence 467899886554 34899999995 6666677899885 7754210
Q ss_pred -----------Cch-------------HHHH----HH-hHHHHHhhc--cCccEEEEccccHHHHHHHHHHHhhhhcccC
Q 001292 264 -----------NSH-------------SLWE----QI-AGQISILGQ--EQYSLIDWSIFDGIIADSLEAKEAISSLMQE 312 (1106)
Q Consensus 264 -----------~~~-------------~i~r----~l-g~lvkiIr~--~~pDiIh~~~~~~i~v~~La~k~~idII~te 312 (1106)
+.. .+|. .. ..+..+++. .+||+||.|.+...++..+.++.
T Consensus 357 ~~~~gv~I~RvP~~~~~g~l~~~l~k~~L~~~L~~F~~~~l~~il~~~~~~PDVIHsH~~~sglva~llar~-------- 428 (816)
T 3s28_A 357 YDSEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKELNGKPDLIIGNYSDGNLVASLLAHK-------- 428 (816)
T ss_dssp TTCSSEEEEEECEEETTEEECSCCCTTTCGGGHHHHHHHHHHHHHHHCSSCCSEEEEEHHHHHHHHHHHHHH--------
T ss_pred cCcCCeEEEEecCCCccccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCchHHHHHHHHHHH--------
Confidence 000 0111 11 112233332 37999999988887777666653
Q ss_pred CCCCCcEEEEEcCCcccccch--hhh--hhhHHhHHHH---HHHHhccccEEEecCCChhhh-------hc---------
Q 001292 313 PFHSIPLVWIIQEDSLANRLP--VYV--ERGFQNLLSY---WKSVFSRVNVIVFPDYTLPML-------YS--------- 369 (1106)
Q Consensus 313 ~~~gIPVI~tIHna~Ls~r~~--~Y~--~~gleklis~---~~~~l~~AD~VIa~S~~~~~~-------~~--------- 369 (1106)
.++|+|+++|+........ .+. ....-++... -...++.+|.||+.+...... +.
T Consensus 429 --~gvP~V~T~Hsl~~~k~~~~~~~~~~~~~~y~~~~r~~aE~~~l~~AD~VIa~S~~~~~~l~~~~~~y~~~~~~~~p~ 506 (816)
T 3s28_A 429 --LGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITSTFQEIAGSKETVGQYESHTAFTLPG 506 (816)
T ss_dssp --HTCCEEEECSCCHHHHSTTTTTTHHHHHHHHCHHHHHHHHHHHHHHSSEEEESCHHHHHCCSSSCCTTGGGSSEEETT
T ss_pred --cCCCEEEEEecccccccccccchhhhHHHHHHHHHHHHHHHHHHHhCCEEEECCHHHHHHHHHHHHHhhhhhccccch
Confidence 4799999999843221110 000 0000000011 123678999999998654431 11
Q ss_pred --------CCCCCCEEEeCCCCCCcccccccCcchhHH------------------HHHHHcCC--CCCcEEEEEEcccC
Q 001292 370 --------VLDAGNFFVIPGSPADVWAVEAYSKSHEKY------------------QLRKENGF--LKDEIVVVVVGSSF 421 (1106)
Q Consensus 370 --------gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~------------------~LR~~lGL--~~d~~VIL~VGRl~ 421 (1106)
+....++.|||| |+|. +.|.+..... ..++.+|+ .++.++|+++||+.
T Consensus 507 Lyr~~~gI~~~~~ki~VIpn-GVD~---~~F~P~~~~~~Rl~~~~~~i~~~l~~p~~~r~~lg~l~~~~~~vIl~vGRl~ 582 (816)
T 3s28_A 507 LYRVVHGIDVFDPKFNIVSP-GADM---SIYFPYTEEKRRLTKFHSEIEELLYSDVENKEHLCVLKDKKKPILFTMARLD 582 (816)
T ss_dssp TEEEEESCCTTCTTEEECCC-CCCT---TTSCCTTCTTTCCGGGHHHHHHHHHCSCCBTTEESCBSCTTSCEEEEECCCC
T ss_pred hhhcccccccCCCCEEEECC-CcCH---HHcCccchhhhhhhhccccccccccchhhHHHHhcccCCCCCeEEEEEccCc
Confidence 112238999998 8998 6666542111 12345566 67889999999998
Q ss_pred ccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCC---------ccHHHHHHHHHHcCCCCCcEEEcCCh-
Q 001292 422 FYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTD---------GYNDALQEVASRLGLLEHSVRHYGFN- 491 (1106)
Q Consensus 422 ~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~Gpe---------rY~eeLkeLaeklGL~d~rV~flG~~- 491 (1106)
+ .||++.+++|+..+.+.. ++++ |+|+|.++. .+.+.++++++++++.+ +|.|+|++
T Consensus 583 ~----~KGid~LIeA~~~L~~~~-------~~v~-LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~-~V~flG~~~ 649 (816)
T 3s28_A 583 R----VKNLSGLVEWYGKNTRLR-------ELAN-LVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNG-QFRWISSQM 649 (816)
T ss_dssp T----TTTHHHHHHHHHHCHHHH-------HHCE-EEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBB-BEEEECCCC
T ss_pred c----cCCHHHHHHHHHHHHhhC-------CCeE-EEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCC-cEEEccCcc
Confidence 8 899999999999887543 5677 688999882 13588999999999987 99999943
Q ss_pred -----hhHHHHHH-HcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHH
Q 001292 492 -----GDVNGVLL-MADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLF 565 (1106)
Q Consensus 492 -----eDL~~Lya-aADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~L 565 (1106)
+++..+|+ ++|++|+||..| +||++++||||||+|||+++.||+.|++.++.+|+++++.|+++|+++|.++
T Consensus 650 ~~v~~~eL~~~~~~aaDvfV~PS~~E--gfglvllEAMA~G~PVIasd~GG~~EiV~dg~~Gllv~p~D~e~LA~aI~~l 727 (816)
T 3s28_A 650 DRVRNGELYRYICDTKGAFVQPALYE--AFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAADTLADF 727 (816)
T ss_dssp CHHHHHHHHHHHHHTTCEEEECCSCB--SSCHHHHHHHHTTCCEEEESSBTHHHHCCBTTTBEEECTTSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHhcCeEEEECCCcc--CccHHHHHHHHcCCCEEEeCCCChHHHHccCCcEEEeCCCCHHHHHHHHHHH
Confidence 56888888 689999999987 9999999999999999999999999999999999999999999999999777
Q ss_pred H----hCcccHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHH
Q 001292 566 I----SNGKLSKFARTVASAGRLHAKNM-LALDCVTRYARILENV 605 (1106)
Q Consensus 566 L----sDpelRk~r~~mGe~Are~ake~-fsee~v~~Y~eLyesl 605 (1106)
+ +|++. +.+|+++|++.+.+. .|+..+++|.++|+..
T Consensus 728 L~~Ll~d~~~---~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~~ 769 (816)
T 3s28_A 728 FTKCKEDPSH---WDEISKGGLQRIEEKYTWQIYSQRLLTLTGVY 769 (816)
T ss_dssp HHHHHHCTHH---HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 6 89987 689999999999554 5566677999999864
No 14
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=99.97 E-value=1.9e-29 Score=278.14 Aligned_cols=301 Identities=14% Similarity=0.057 Sum_probs=235.3
Q ss_pred CCEEEEEeCC--------C------CCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHH----H--HHHhHHHHHhhc
Q 001292 222 PPRIGLILGN--------M------AKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSL----W--EQIAGQISILGQ 281 (1106)
Q Consensus 222 ~~RIalVlg~--------L------~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i----~--r~lg~lvkiIr~ 281 (1106)
++||+++.+. + ..||.+..+..++++|.++||+|++++...+..... . .....+.++++.
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 82 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGRPGLTVVPAGEPEEIERWLRT 82 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCSTTEEECSCCSHHHHHHHHHH
T ss_pred ccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCCcceeccCCcHHHHHHHHHh
Confidence 5799999988 2 348999999999999999999999998754321100 0 000124567777
Q ss_pred cCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecC
Q 001292 282 EQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPD 361 (1106)
Q Consensus 282 ~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S 361 (1106)
.++|+||.+.....+.. . ...++| |+++|+..... ..+|.+++.|
T Consensus 83 ~~~Dvi~~~~~~~~~~~---~----------~~~~~p-v~~~h~~~~~~---------------------~~~d~ii~~S 127 (342)
T 2iuy_A 83 ADVDVVHDHSGGVIGPA---G----------LPPGTA-FISSHHFTTRP---------------------VNPVGCTYSS 127 (342)
T ss_dssp CCCSEEEECSSSSSCST---T----------CCTTCE-EEEEECSSSBC---------------------SCCTTEEESC
T ss_pred cCCCEEEECCchhhHHH---H----------hhcCCC-EEEecCCCCCc---------------------ccceEEEEcC
Confidence 89999999876643221 1 136889 99999963211 0188899998
Q ss_pred CChhhhhcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHHHhH
Q 001292 362 YTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLL 441 (1106)
Q Consensus 362 ~~~~~~~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll 441 (1106)
......... ..++.+||| |+|. +.|.+... .. ++.++|+++||+.+ .||++.+++|++.+
T Consensus 128 ~~~~~~~~~--~~~~~vi~n-gvd~---~~~~~~~~--------~~-~~~~~i~~vG~~~~----~Kg~~~li~a~~~~- 187 (342)
T 2iuy_A 128 RAQRAHCGG--GDDAPVIPI-PVDP---ARYRSAAD--------QV-AKEDFLLFMGRVSP----HKGALEAAAFAHAC- 187 (342)
T ss_dssp HHHHHHTTC--CTTSCBCCC-CBCG---GGSCCSTT--------CC-CCCSCEEEESCCCG----GGTHHHHHHHHHHH-
T ss_pred HHHHHHHhc--CCceEEEcC-CCCh---hhcCcccc--------cC-CCCCEEEEEecccc----ccCHHHHHHHHHhc-
Confidence 776665443 568899998 7997 55554321 12 34568999999887 89999999999654
Q ss_pred HHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCCh--hhHHHHHHHcCeEEEccC----------
Q 001292 442 IKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFN--GDVNGVLLMADIVLYGSS---------- 509 (1106)
Q Consensus 442 ~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~--eDL~~LyaaADVfV~PS~---------- 509 (1106)
+++ |+|+|.++.. +.+++++++++ + +|+|+|+. .++..+|+.||++|+||.
T Consensus 188 -----------~~~-l~i~G~g~~~--~~l~~~~~~~~--~-~v~~~g~~~~~~l~~~~~~adv~v~ps~~~~~~~~~~~ 250 (342)
T 2iuy_A 188 -----------GRR-LVLAGPAWEP--EYFDEITRRYG--S-TVEPIGEVGGERRLDLLASAHAVLAMSQAVTGPWGGIW 250 (342)
T ss_dssp -----------TCC-EEEESCCCCH--HHHHHHHHHHT--T-TEEECCCCCHHHHHHHHHHCSEEEECCCCCCCTTCSCC
T ss_pred -----------CcE-EEEEeCcccH--HHHHHHHHHhC--C-CEEEeccCCHHHHHHHHHhCCEEEECCccccccccccc
Confidence 345 6889999865 89999999887 4 89999966 467999999999999999
Q ss_pred CCCCCCcHHHHHHHHhCCCEEecCCCCchhhhcc--CCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH-
Q 001292 510 QVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAE--GAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHA- 586 (1106)
Q Consensus 510 ~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~D--g~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~a- 586 (1106)
.| +||++++||||||+|||+++.+++.|++.+ +.+|+++++ |+++|+++|.++++ ++++++.+
T Consensus 251 ~E--~~~~~~~EAma~G~PvI~s~~~~~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~l~~-----------~~~~~~~~~ 316 (342)
T 2iuy_A 251 CE--PGATVVSEAAVSGTPVVGTGNGCLAEIVPSVGEVVGYGTDF-APDEARRTLAGLPA-----------SDEVRRAAV 316 (342)
T ss_dssp CC--CCCHHHHHHHHTTCCEEECCTTTHHHHGGGGEEECCSSSCC-CHHHHHHHHHTSCC-----------HHHHHHHHH
T ss_pred cc--CccHHHHHHHhcCCCEEEcCCCChHHHhcccCCCceEEcCC-CHHHHHHHHHHHHH-----------HHHHHHHHH
Confidence 66 999999999999999999999999999999 889999999 99999999999987 34677777
Q ss_pred HHhcHHHHHHHHHHHHHHHhcC
Q 001292 587 KNMLALDCVTRYARILENVLNF 608 (1106)
Q Consensus 587 ke~fsee~v~~Y~eLyeslLk~ 608 (1106)
+++.++..+++|.++|+++++.
T Consensus 317 ~~~s~~~~~~~~~~~~~~~~~~ 338 (342)
T 2iuy_A 317 RLWGHVTIAERYVEQYRRLLAG 338 (342)
T ss_dssp HHHBHHHHHHHHHHHHHHHHTT
T ss_pred HhcCHHHHHHHHHHHHHHHHcc
Confidence 4556677778999999998874
No 15
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.94 E-value=1.5e-25 Score=248.27 Aligned_cols=312 Identities=13% Similarity=0.073 Sum_probs=229.9
Q ss_pred CCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchH----------------------------HH---H
Q 001292 222 PPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHS----------------------------LW---E 270 (1106)
Q Consensus 222 ~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~----------------------------i~---r 270 (1106)
.+||+++.+. .+|....+..++++|.++||+|++++..++.... .+ .
T Consensus 6 ~mkIl~~~~~--~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (364)
T 1f0k_A 6 GKRLMVMAGG--TGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADLVPKHGIEIDFIRISGLRGKGIKALIAAPLRIFN 83 (364)
T ss_dssp -CEEEEECCS--SHHHHHHHHHHHHHHHTTTCEEEEEECTTSTHHHHGGGGTCEEEECCCCCCTTCCHHHHHTCHHHHHH
T ss_pred CcEEEEEeCC--CccchhHHHHHHHHHHHcCCEEEEEecCCcchhhhccccCCceEEecCCccCcCccHHHHHHHHHHHH
Confidence 4799999754 4688888899999999999999999875431100 01 1
Q ss_pred HHhHHHHHhhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHH
Q 001292 271 QIAGQISILGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSV 350 (1106)
Q Consensus 271 ~lg~lvkiIr~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~ 350 (1106)
....+.+.++..+||+||.+.....+...+..+. .++|+|++.|+... . .... ..
T Consensus 84 ~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~----------~~~p~v~~~~~~~~--------~-----~~~~--~~ 138 (364)
T 1f0k_A 84 AWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWS----------LGIPVVLHEQNGIA--------G-----LTNK--WL 138 (364)
T ss_dssp HHHHHHHHHHHHCCSEEEECSSTTHHHHHHHHHH----------TTCCEEEEECSSSC--------C-----HHHH--HH
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcCchHHHHHHHH----------cCCCEEEEecCCCC--------c-----HHHH--HH
Confidence 1222556777789999999876544444344332 57999999888521 0 0111 23
Q ss_pred hccccEEEecCCChhhhhcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEE-EEcccCccccccCC
Q 001292 351 FSRVNVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVV-VVGSSFFYNELSWD 429 (1106)
Q Consensus 351 l~~AD~VIa~S~~~~~~~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL-~VGRl~~y~kg~Kg 429 (1106)
.+.+|.+++.+... ++ ++.+|+| |+|. +.|.+.. .+..++++++.++++ ++|++.. .|+
T Consensus 139 ~~~~d~v~~~~~~~------~~--~~~~i~n-~v~~---~~~~~~~----~~~~~~~~~~~~~il~~~g~~~~----~k~ 198 (364)
T 1f0k_A 139 AKIATKVMQAFPGA------FP--NAEVVGN-PVRT---DVLALPL----PQQRLAGREGPVRVLVVGGSQGA----RIL 198 (364)
T ss_dssp TTTCSEEEESSTTS------SS--SCEECCC-CCCH---HHHTSCC----HHHHHTTCCSSEEEEEECTTTCC----HHH
T ss_pred HHhCCEEEecChhh------cC--CceEeCC-ccch---hhcccch----hhhhcccCCCCcEEEEEcCchHh----HHH
Confidence 46789988876543 23 5778887 7886 4443321 245677776766555 4566655 678
Q ss_pred HHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccC
Q 001292 430 YAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSS 509 (1106)
Q Consensus 430 ~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~ 509 (1106)
.+.+++|++.+.+ ++++++++|+++ .+.+++++++++++ +|.|.|+.+++..+|+.||++|+||
T Consensus 199 ~~~li~a~~~l~~----------~~~~l~i~G~~~---~~~l~~~~~~~~~~--~v~~~g~~~~~~~~~~~ad~~v~~s- 262 (364)
T 1f0k_A 199 NQTMPQVAAKLGD----------SVTIWHQSGKGS---QQSVEQAYAEAGQP--QHKVTEFIDDMAAAYAWADVVVCRS- 262 (364)
T ss_dssp HHHHHHHHHHHGG----------GEEEEEECCTTC---HHHHHHHHHHTTCT--TSEEESCCSCHHHHHHHCSEEEECC-
T ss_pred HHHHHHHHHHhcC----------CcEEEEEcCCch---HHHHHHHHhhcCCC--ceEEecchhhHHHHHHhCCEEEECC-
Confidence 8999999976631 456677889988 27888999988885 6999999999999999999999997
Q ss_pred CCCCCCcHHHHHHHHhCCCEEecCCCCch--------hhhccCCeEEEEcCCC--HHHHHHHHHHHHhCcccHHHHHHHH
Q 001292 510 QVEQGFPSLIVRAMTFGIPVITPDFPIIK--------EYVAEGAQVIFFQKDN--PEGLSRAFSLFISNGKLSKFARTVA 579 (1106)
Q Consensus 510 ~EeEGFGlvLLEAMA~G~PVIASD~gGI~--------EiV~Dg~nG~LV~~~D--~eeLAeAI~~LLsDpelRk~r~~mG 579 (1106)
| |++++||||+|+|||+++.+|+. +++.++ .|++++++| +++|+++|.++ |+++ +++|+
T Consensus 263 ----g-~~~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~~~g-~g~~~~~~d~~~~~la~~i~~l--~~~~---~~~~~ 331 (364)
T 1f0k_A 263 ----G-ALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAG-AAKIIEQPQLSVDAVANTLAGW--SRET---LLTMA 331 (364)
T ss_dssp ----C-HHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHTT-SEEECCGGGCCHHHHHHHHHTC--CHHH---HHHHH
T ss_pred ----c-hHHHHHHHHhCCCEEEeeCCCCchhHHHHHHHHHhCC-cEEEeccccCCHHHHHHHHHhc--CHHH---HHHHH
Confidence 3 89999999999999999999864 456555 599999988 99999999999 7776 68899
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHhc
Q 001292 580 SAGRLHAKNMLALDCVTRYARILENVLN 607 (1106)
Q Consensus 580 e~Are~ake~fsee~v~~Y~eLyeslLk 607 (1106)
+++++.++++.++..++.|.++|++..+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 359 (364)
T 1f0k_A 332 ERARAASIPDATERVANEVSRVARALEH 359 (364)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHHHTTC--
T ss_pred HHHHHhhccCHHHHHHHHHHHHHHHHHh
Confidence 9999998876677777899999987544
No 16
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=99.94 E-value=1.6e-26 Score=266.47 Aligned_cols=325 Identities=12% Similarity=0.116 Sum_probs=213.8
Q ss_pred CCCCEEEEEeCCCCCC---hhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHHHHHhH--H----------HHH------
Q 001292 220 VRPPRIGLILGNMAKD---SRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLWEQIAG--Q----------ISI------ 278 (1106)
Q Consensus 220 ~r~~RIalVlg~L~~g---Gesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r~lg~--l----------vki------ 278 (1106)
.+++||+++++.+.++ |....+..++++|.++||+|+|++............+.. . ..+
T Consensus 44 ~~~mrI~~v~~~~~p~~~~GG~~~v~~la~~L~~~GheV~Vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (413)
T 2x0d_A 44 IKGKRLNLLVPSINQEHMFGGISTALKLFEQFDNKKFKKRIILTDATPNPKDLQSFKSFKYVMPEEDKDFALQIVPFNDR 123 (413)
T ss_dssp CCSCEEEEEESCCCGGGCSHHHHHHHHHHTTSCTTTCEEEEEESSCCCCHHHHGGGTTSEECCTTCCCCCSEEEEECSCC
T ss_pred CCCceEEEEeCCCCccccccHHHHHHHHHHHHHHcCCceEEEEecCCCChHHHHhhhccceeeccCCccccceeeecccc
Confidence 4678999999999874 555568899999999999999999864321111000000 0 000
Q ss_pred ----hhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccc
Q 001292 279 ----LGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRV 354 (1106)
Q Consensus 279 ----Ir~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~A 354 (1106)
+....+|+||.+.+..........+...... .....|.++.+|+..-. +++. ...... ....+..+
T Consensus 124 ~~~~~~~~~~Dvv~a~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~----~~~~-~~~~~~--~~~~~~~~ 193 (413)
T 2x0d_A 124 YNRTIPVAKHDIFIATAWWTAYAAQRIVSWQSDTY---GIPPNKILYIIQDFEPG----FYQW-SSQYVL--AESTYKYR 193 (413)
T ss_dssp TTCCEEECTTEEEEECSHHHHHHHHHHHHHHHHHH---TCCCCCEEEEECSCGGG----GSCS-SHHHHH--HHHTTSCC
T ss_pred ccccccCCCCCEEEEehHHHHHHHHHhhhhhhhhc---ccccCcEEEEEeechhh----cCcc-ChHHHH--HHHHhccC
Confidence 0123588998887665443332211000000 01356788877774211 0010 001111 12345544
Q ss_pred c--EEEecCCChhhh--hcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCH
Q 001292 355 N--VIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDY 430 (1106)
Q Consensus 355 D--~VIa~S~~~~~~--~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~ 430 (1106)
+ .++++|....+. ..+++..++.+++| |+|. +.|.+. ..+ .++...++++||+.. ..|++
T Consensus 194 ~~~~vi~~S~~~~~~l~~~g~~~~~~~~i~~-g~d~---~~~~~~--------~~~-~~~~~~il~~gr~~~---~~Kg~ 257 (413)
T 2x0d_A 194 GPQIAVFNSELLKQYFNNKGYNFTDEYFFQP-KINT---TLKNYI--------NDK-RQKEKIILVYGRPSV---KRNAF 257 (413)
T ss_dssp SCEEEEEESHHHHHHHHHHTCCCSEEEEECC-CCCH---HHHTTT--------TSC-CCCCSEEEEEECTTC---GGGCH
T ss_pred CceEEEEcCHHHHHHHHHcCCCCCceEEeCC-CcCc---hhhccc--------ccc-cCCCCEEEEEecCch---hccCH
Confidence 4 577788666554 33565567888887 7886 333221 112 234557888998642 16899
Q ss_pred HHHHHHHHHhHHHHHhhccCCC---CeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCC--hhhHHHHHHHcCeEE
Q 001292 431 AVAMHDVGPLLIKYARRNSVEG---SFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGF--NGDVNGVLLMADIVL 505 (1106)
Q Consensus 431 dlLLeA~k~Ll~k~aklk~~~P---dikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~--~eDL~~LyaaADVfV 505 (1106)
+.+++|++.+.++. | +++ |+++|+++.. .++++.+ +|+|+|. .+++..+|+.||++|
T Consensus 258 ~~li~A~~~l~~~~-------~~~~~~~-l~ivG~~~~~---------~~l~~~~-~v~f~G~~~~~~l~~~~~~adv~v 319 (413)
T 2x0d_A 258 TLIVEALKIFVQKY-------DRSNEWK-IISVGEKHKD---------IALGKGI-HLNSLGKLTLEDYADLLKRSSIGI 319 (413)
T ss_dssp HHHHHHHHHHHHHC-------TTGGGCE-EEEEESCCCC---------EEEETTE-EEEEEESCCHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHHHHhC-------CCCCceE-EEEEcCCchh---------hhcCCcC-cEEEcCCCCHHHHHHHHHhCCEEE
Confidence 99999998876432 4 377 6889998764 2467776 8999995 489999999999999
Q ss_pred EccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Q 001292 506 YGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLH 585 (1106)
Q Consensus 506 ~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ 585 (1106)
+||..| +||++++||||||+|||++ .+|..|++.++.+|+++++.|+++|+++|.++++|++++ ++ ++++.
T Consensus 320 ~pS~~E--~~g~~~lEAmA~G~PVV~~-~~g~~e~v~~~~~G~lv~~~d~~~la~ai~~ll~~~~~~---~~---~~~~~ 390 (413)
T 2x0d_A 320 SLMISP--HPSYPPLEMAHFGLRVITN-KYENKDLSNWHSNIVSLEQLNPENIAETLVELCMSFNNR---DV---DKKES 390 (413)
T ss_dssp CCCSSS--SCCSHHHHHHHTTCEEEEE-CBTTBCGGGTBTTEEEESSCSHHHHHHHHHHHHHHTC-------------CC
T ss_pred EecCCC--CCCcHHHHHHhCCCcEEEe-CCCcchhhhcCCCEEEeCCCCHHHHHHHHHHHHcCHHHH---HH---hHHHH
Confidence 999986 9999999999999999995 567789999999999999999999999999999999984 33 56666
Q ss_pred HHHhcHHHHHHH
Q 001292 586 AKNMLALDCVTR 597 (1106)
Q Consensus 586 ake~fsee~v~~ 597 (1106)
++++.|+.++++
T Consensus 391 ~~~~~W~~~~~~ 402 (413)
T 2x0d_A 391 SNMMFYINEFNE 402 (413)
T ss_dssp BSCGGGCCCC--
T ss_pred HHhCCHHHHHHH
Confidence 767777655443
No 17
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.93 E-value=2.3e-25 Score=262.81 Aligned_cols=322 Identities=11% Similarity=0.079 Sum_probs=233.1
Q ss_pred CCCCCEEEEEeCCCCCChhHHHHHHHHHH--HHHCCCEEEEEEcCCC---CchHHHHH-----------HhHHHHHhhcc
Q 001292 219 GVRPPRIGLILGNMAKDSRSLLLITVVKN--LQKLGYVFKIYAVRSG---NSHSLWEQ-----------IAGQISILGQE 282 (1106)
Q Consensus 219 g~r~~RIalVlg~L~~gGesl~vv~Laka--Lqe~GyeVtV~t~~dg---~~~~i~r~-----------lg~lvkiIr~~ 282 (1106)
+.+++||+++++.+..+|.+.++.++++. |.+.|++|++++..+. ......+. ...+.+.++..
T Consensus 202 ~~~~~rI~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 281 (568)
T 2vsy_A 202 SKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTRLAQASTLHDVTALGHLATAKHIRHH 281 (568)
T ss_dssp SSSCEEEEEEESCSSSSHHHHHHHHHHHHHHHHCTTEEEEEEESSCCCSCHHHHHHHHTSEEEECTTCCHHHHHHHHHHT
T ss_pred CCCCeEEEEECcccccChHHHHHHHHHhhccCCcccEEEEEEECCCCCccHHHHHHHhcCeEEECCCCCHHHHHHHHHhC
Confidence 45678999999999999999999999999 7888999999987532 11111111 11255667778
Q ss_pred CccEEEEccccH--HHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEec
Q 001292 283 QYSLIDWSIFDG--IIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFP 360 (1106)
Q Consensus 283 ~pDiIh~~~~~~--i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~ 360 (1106)
++|+||.+.... ..+..+. .+..|++++.|+......... ..+..+|.++++
T Consensus 282 ~~Div~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~d~~i~~ 335 (568)
T 2vsy_A 282 GIDLLFDLRGWGGGGRPEVFA------------LRPAPVQVNWLAYPGTSGAPW--------------MDYVLGDAFALP 335 (568)
T ss_dssp TCSEEEECSSCTTCSSCHHHH------------TCCSSEEEEESSSSSCCCCTT--------------CCEEEECTTTSC
T ss_pred CCCEEEECCCCCCcchHHHHh------------cCCCceeEeeecCCcccCCCC--------------ceEEEECCCcCC
Confidence 888887643221 1111111 134688888877432111100 001234555556
Q ss_pred CCChhhhhcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHHHh
Q 001292 361 DYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPL 440 (1106)
Q Consensus 361 S~~~~~~~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~L 440 (1106)
+..... + .+++.+||| .++. ....+.......|+++|++++.+ ++++|++.. |+++.+++|+..+
T Consensus 336 s~~~~~----~-~~~i~~ipn-~~~~---~~~~~~~~~~~~r~~~~~~~~~~-v~~~g~~~~-----K~~~~li~a~~~l 400 (568)
T 2vsy_A 336 PALEPF----Y-SEHVLRLQG-AFQP---SDTSRVVAEPPSRTQCGLPEQGV-VLCCFNNSY-----KLNPQSMARMLAV 400 (568)
T ss_dssp TTTGGG----C-SSEEEECSS-CSCC---CCTTCCCCCCCCTGGGTCCTTSC-EEEECCCGG-----GCCHHHHHHHHHH
T ss_pred cccccC----C-cceeEcCCC-cCCC---CCCCCCCCCCCCccccCCCCCCE-EEEeCCccc-----cCCHHHHHHHHHH
Confidence 554332 2 268999998 4543 11111111223577889877664 558887542 7889999999888
Q ss_pred HHHHHhhccCCCCeEEEEEEc-CCCCccHHHHHHHHHHcCCC-CCcEEEcCCh--hhHHHHHHHcCeEEEccCCCCCCCc
Q 001292 441 LIKYARRNSVEGSFKFVFLCG-NSTDGYNDALQEVASRLGLL-EHSVRHYGFN--GDVNGVLLMADIVLYGSSQVEQGFP 516 (1106)
Q Consensus 441 l~k~aklk~~~PdikfLIIVG-~GperY~eeLkeLaeklGL~-d~rV~flG~~--eDL~~LyaaADVfV~PS~~EeEGFG 516 (1106)
.++. |+++ |+|+| +++.. +.++++++++|+. + +|+|+|+. +++..+|+.||++|+||.+ |||
T Consensus 401 ~~~~-------~~~~-l~i~G~~g~~~--~~l~~~~~~~~l~~~-~v~~~g~~~~~~~~~~~~~adv~v~ps~~---~~g 466 (568)
T 2vsy_A 401 LREV-------PDSV-LWLLSGPGEAD--ARLRAFAHAQGVDAQ-RLVFMPKLPHPQYLARYRHADLFLDTHPY---NAH 466 (568)
T ss_dssp HHHC-------TTCE-EEEECCSTTHH--HHHHHHHHHTTCCGG-GEEEECCCCHHHHHHHGGGCSEEECCSSS---CCS
T ss_pred HHhC-------CCcE-EEEecCCHHHH--HHHHHHHHHcCCChh-HEEeeCCCCHHHHHHHHhcCCEEeeCCCC---CCc
Confidence 6433 7887 68888 78754 9999999999998 6 99999977 5899999999999999986 999
Q ss_pred HHHHHHHHhCCCEEe-------cCCC-------CchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHH
Q 001292 517 SLIVRAMTFGIPVIT-------PDFP-------IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAG 582 (1106)
Q Consensus 517 lvLLEAMA~G~PVIA-------SD~g-------GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~A 582 (1106)
++++||||||+|||+ ++.+ |++|+|.+ |+++++++|..+++|+++ +.+|++++
T Consensus 467 ~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~~----------~~~~la~~i~~l~~~~~~---~~~~~~~~ 533 (568)
T 2vsy_A 467 TTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMNVA----------DDAAFVAKAVALASDPAA---LTALHARV 533 (568)
T ss_dssp HHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHTCGGGBCS----------SHHHHHHHHHHHHHCHHH---HHHHHHHH
T ss_pred HHHHHHHhCCCCEEeccCCCchHHHHHHHHHHCCChhhhcC----------CHHHHHHHHHHHhcCHHH---HHHHHHHH
Confidence 999999999999999 9999 99998844 899999999999999987 68899999
Q ss_pred HHHH---HHhcHHHHHHHHHHHHHHHhcC
Q 001292 583 RLHA---KNMLALDCVTRYARILENVLNF 608 (1106)
Q Consensus 583 re~a---ke~fsee~v~~Y~eLyeslLk~ 608 (1106)
++.+ ..+.++..+.+|.++|++++..
T Consensus 534 ~~~~~~~~~f~~~~~~~~~~~~y~~~~~~ 562 (568)
T 2vsy_A 534 DVLRRASGVFHMDGFADDFGALLQALARR 562 (568)
T ss_dssp HHHHHHSSTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHhhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9998 4455677777999999988764
No 18
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.93 E-value=4.4e-25 Score=250.75 Aligned_cols=301 Identities=12% Similarity=0.023 Sum_probs=216.0
Q ss_pred CCCccccccCCCCCCCCCCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHHH--------------
Q 001292 205 FGNGLDGLRSTPRFGVRPPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLWE-------------- 270 (1106)
Q Consensus 205 ~~~~~~ha~Sv~r~g~r~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r-------------- 270 (1106)
++.+|.|++|+ |+...+.+|+++|.+.| +|.+++.+++......+
T Consensus 40 ~~~iwih~~s~--------------------G~~~~~~~L~~~L~~~~-~v~v~~~~~~~~~~~~~~~~~v~~~~~~p~~ 98 (374)
T 2xci_A 40 KGALWVHTASI--------------------GEFNTFLPILKELKREH-RILLTYFSPRAREYLKTKSDFYDCLHPLPLD 98 (374)
T ss_dssp TTCEEEECSSH--------------------HHHHHHHHHHHHHHHHS-CEEEEESCGGGHHHHHTTGGGCSEEEECCCS
T ss_pred CCCEEEEcCCH--------------------HHHHHHHHHHHHHHhcC-CEEEEEcCCcHHHHHHHhcccccceeECCCC
Confidence 46689999999 99999999999999999 88877765433211100
Q ss_pred HHhHHHHHhhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHH
Q 001292 271 QIAGQISILGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSV 350 (1106)
Q Consensus 271 ~lg~lvkiIr~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~ 350 (1106)
....+.++++..+||++++...... .. +... . .. |++...+.. ..+. .++..
T Consensus 99 ~~~~l~~~l~~~~pDiv~~~~~~~~-~~-~~~~-~---------~~-p~~~~~~~~--~~~~-------------~~~~~ 150 (374)
T 2xci_A 99 NPFSVKRFEELSKPKALIVVEREFW-PS-LIIF-T---------KV-PKILVNAYA--KGSL-------------IEKIL 150 (374)
T ss_dssp SHHHHHHHHHHHCCSEEEEESCCCC-HH-HHHH-C---------CS-CEEEEEECC--CCCH-------------HHHHH
T ss_pred CHHHHHHHHHHhCCCEEEEECccCc-HH-HHHH-H---------hC-CEEEEEeec--CchH-------------HHHHH
Confidence 0112456666778888776432210 11 1110 1 22 766553321 1111 12345
Q ss_pred hccccEEEecCCChhhh--hcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccC
Q 001292 351 FSRVNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSW 428 (1106)
Q Consensus 351 l~~AD~VIa~S~~~~~~--~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~K 428 (1106)
++.+|.++++|....+. ..+++ ++.+|+|..++. ... + +.. + ..++++++|+ + .|
T Consensus 151 ~~~~d~ii~~S~~~~~~l~~~g~~--ki~vi~n~~f~~---~~~-~-------~~~--l--~~~vi~~~~~----~--~k 207 (374)
T 2xci_A 151 SKKFDLIIMRTQEDVEKFKTFGAK--RVFSCGNLKFIC---QKG-K-------GIK--L--KGEFIVAGSI----H--TG 207 (374)
T ss_dssp HTTCSEEEESCHHHHHHHHTTTCC--SEEECCCGGGCC---CCC-S-------CCC--C--SSCEEEEEEE----C--GG
T ss_pred HHhCCEEEECCHHHHHHHHHcCCC--eEEEcCCCccCC---CcC-h-------hhh--h--cCCEEEEEeC----C--Cc
Confidence 78899999999877665 33454 899999854443 110 1 111 1 1256776663 2 46
Q ss_pred CHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCC-------CcEEEcCChhhHHHHHHHc
Q 001292 429 DYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLE-------HSVRHYGFNGDVNGVLLMA 501 (1106)
Q Consensus 429 g~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d-------~rV~flG~~eDL~~LyaaA 501 (1106)
|++.+++|++.+.+ ..|+++ |+|+|+|+++ .++++++++++|+.. ++|.+.|+.+|+..+|+.|
T Consensus 208 ~~~~ll~A~~~l~~-------~~p~~~-lvivG~g~~~-~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~~a 278 (374)
T 2xci_A 208 EVEIILKAFKEIKK-------TYSSLK-LILVPRHIEN-AKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPVG 278 (374)
T ss_dssp GHHHHHHHHHHHHT-------TCTTCE-EEEEESSGGG-HHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGGGE
T ss_pred hHHHHHHHHHHHHh-------hCCCcE-EEEECCCHHH-HHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHHhC
Confidence 89999999987753 337887 6889999875 568999999999861 2699999999999999999
Q ss_pred CeEEEccCCCCCCCcHHHHHHHHhCCCEEec-CCCCchhhhccC-CeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHH
Q 001292 502 DIVLYGSSQVEQGFPSLIVRAMTFGIPVITP-DFPIIKEYVAEG-AQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVA 579 (1106)
Q Consensus 502 DVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS-D~gGI~EiV~Dg-~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mG 579 (1106)
|++|+||+++ |++|++++||||||+|||++ +.++++|++.+. .+|++++++|+++|+++|.++++| ++ +++|+
T Consensus 279 Dv~vl~ss~~-e~gg~~~lEAmA~G~PVI~~~~~~~~~e~~~~~~~~G~l~~~~d~~~La~ai~~ll~d-~~---r~~mg 353 (374)
T 2xci_A 279 KIAIVGGTFV-NIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKEGAGFEVKNETELVTKLTELLSV-KK---EIKVE 353 (374)
T ss_dssp EEEEECSSSS-SSCCCCCHHHHTTTCCEEECSCCTTSHHHHHHHHHTTCEEECCSHHHHHHHHHHHHHS-CC---CCCHH
T ss_pred CEEEECCccc-CCCCcCHHHHHHhCCCEEECCCccChHHHHHHHHHCCCEEEeCCHHHHHHHHHHHHhH-HH---HHHHH
Confidence 9999998875 58899999999999999975 789999988653 478889999999999999999999 87 58899
Q ss_pred HHHHHHHHHhcH
Q 001292 580 SAGRLHAKNMLA 591 (1106)
Q Consensus 580 e~Are~ake~fs 591 (1106)
++|++.+++++.
T Consensus 354 ~~ar~~~~~~~g 365 (374)
T 2xci_A 354 EKSREIKGCYLE 365 (374)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhccc
Confidence 999999987654
No 19
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.92 E-value=8e-25 Score=244.15 Aligned_cols=335 Identities=10% Similarity=0.065 Sum_probs=223.2
Q ss_pred CEEEEEeCCCCCChhHHHHHHHHHHHHHCC-CEEEEEEcCCCC--chHHH-------------------------HHHhH
Q 001292 223 PRIGLILGNMAKDSRSLLLITVVKNLQKLG-YVFKIYAVRSGN--SHSLW-------------------------EQIAG 274 (1106)
Q Consensus 223 ~RIalVlg~L~~gGesl~vv~LakaLqe~G-yeVtV~t~~dg~--~~~i~-------------------------r~lg~ 274 (1106)
+||+++.+.. ++...+.+++++|+++| +++.|+..+... ..... ..+..
T Consensus 1 mkIl~v~~~~---~~~~~~~~l~~~L~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (384)
T 1vgv_A 1 MKVLTVFGTR---PEAIKMAPLVHALAKDPFFEAKVCVTAQHREMLDQVLKLFSIVPDYDLNIMQPGQGLTEITCRILEG 77 (384)
T ss_dssp CEEEEEECSH---HHHHHHHHHHHHHHHSTTCEEEEEECCSSGGGGHHHHHHHTCCCSEECCCCSTTSCHHHHHHHHHHH
T ss_pred CeEEEEeccc---HHHHHHHHHHHHHHhCCCCceEEEEcCCCHHHHHHHHHHcCCCCCcceecCCCCccHHHHHHHHHHH
Confidence 5789888762 45667789999999998 488766443211 11111 11222
Q ss_pred HHHHhhccCccEEEEccc-cHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhcc
Q 001292 275 QISILGQEQYSLIDWSIF-DGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSR 353 (1106)
Q Consensus 275 lvkiIr~~~pDiIh~~~~-~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~ 353 (1106)
+.++++..+||+||.+.. ...+...+..+ ..++|+|++.|+..........+ ...... ...+.
T Consensus 78 l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~----------~~~ip~v~~~~~~~~~~~~~~~~----~~~~~~--~~~~~ 141 (384)
T 1vgv_A 78 LKPILAEFKPDVVLVHGDTTTTLATSLAAF----------YQRIPVGHVEAGLRTGDLYSPWP----EEANRT--LTGHL 141 (384)
T ss_dssp HHHHHHHHCCSEEEEETTCHHHHHHHHHHH----------TTTCCEEEESCCCCCSCTTSSTT----HHHHHH--HHHTT
T ss_pred HHHHHHHhCCCEEEEeCCchHHHHHHHHHH----------HHCCCEEEEecccccccccCCCc----hHhhHH--HHHhh
Confidence 566777789999999864 33444444432 26899999877742111100000 111111 11346
Q ss_pred ccEEEecCCChhhh--hcCCCCCCEEEeCCCCCCcccccccCcch------hHHHHHHHcC-CCC-CcEEEEEEcccCcc
Q 001292 354 VNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAVEAYSKSH------EKYQLRKENG-FLK-DEIVVVVVGSSFFY 423 (1106)
Q Consensus 354 AD~VIa~S~~~~~~--~~gi~~~KI~VIpN~GVDl~~~e~F~ps~------s~~~LR~~lG-L~~-d~~VIL~VGRl~~y 423 (1106)
+|.+++++...... ..+++++++.+|+|..+|. ..+.+.. ....+++++| +++ +.++++++||+..
T Consensus 142 ~d~ii~~s~~~~~~l~~~g~~~~~i~vi~n~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~gr~~~- 217 (384)
T 1vgv_A 142 AMYHFSPTETSRQNLLRENVADSRIFITGNTVIDA---LLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRES- 217 (384)
T ss_dssp CSEEEESSHHHHHHHHHTTCCGGGEEECCCHHHHH---HHHHHHHTTTCHHHHHHHHTTCTTCCTTSEEEEEECCCBSS-
T ss_pred ccEEEcCcHHHHHHHHHcCCChhhEEEeCChHHHH---HHhhhhccccchhhhHHHHHhccccCCCCCEEEEEeCCccc-
Confidence 99999998765544 3467777899999832453 1111110 1135677788 744 4467889998765
Q ss_pred cccc-CCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCCh--hhHHHHHHH
Q 001292 424 NELS-WDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFN--GDVNGVLLM 500 (1106)
Q Consensus 424 ~kg~-Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~--eDL~~Lyaa 500 (1106)
. |+++.+++|+..+.++. |++++++++|.++. +.+.+++++. ..+ +|.|+|.. +++..+|+.
T Consensus 218 ---~~kg~~~li~a~~~l~~~~-------~~~~l~i~~g~~~~-~~~~l~~~~~---~~~-~v~~~g~~~~~~~~~~~~~ 282 (384)
T 1vgv_A 218 ---FGRGFEEICHALADIATTH-------QDIQIVYPVHLNPN-VREPVNRILG---HVK-NVILIDPQEYLPFVWLMNH 282 (384)
T ss_dssp ---CCHHHHHHHHHHHHHHHHC-------TTEEEEEECCBCHH-HHHHHHHHHT---TCT-TEEEECCCCHHHHHHHHHH
T ss_pred ---cchHHHHHHHHHHHHHhhC-------CCeEEEEEcCCCHH-HHHHHHHHhh---cCC-CEEEeCCCCHHHHHHHHHh
Confidence 4 78999999998876432 67874433454431 2355555543 234 89996632 789999999
Q ss_pred cCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCC-CCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHH
Q 001292 501 ADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDF-PIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVA 579 (1106)
Q Consensus 501 ADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~-gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mG 579 (1106)
||++|+|| . .+++||||||+|||+++. ++..+++.++ +|+++++ |+++|+++|.++++|++. +++|+
T Consensus 283 ad~~v~~S--g-----~~~lEA~a~G~PvI~~~~~~~~~e~v~~g-~g~lv~~-d~~~la~~i~~ll~d~~~---~~~~~ 350 (384)
T 1vgv_A 283 AWLILTDS--G-----GIQEEAPSLGKPVLVMRDTTERPEAVTAG-TVRLVGT-DKQRIVEEVTRLLKDENE---YQAMS 350 (384)
T ss_dssp CSEEEESS--S-----TGGGTGGGGTCCEEEESSCCSCHHHHHHT-SEEEECS-SHHHHHHHHHHHHHCHHH---HHHHH
T ss_pred CcEEEECC--c-----chHHHHHHcCCCEEEccCCCCcchhhhCC-ceEEeCC-CHHHHHHHHHHHHhChHH---Hhhhh
Confidence 99999998 2 238999999999999986 8999999888 9999987 999999999999999987 58899
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHhc
Q 001292 580 SAGRLHAKNMLALDCVTRYARILENVLN 607 (1106)
Q Consensus 580 e~Are~ake~fsee~v~~Y~eLyeslLk 607 (1106)
++++++...+.++..++.+.++|+++++
T Consensus 351 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 378 (384)
T 1vgv_A 351 RAHNPYGDGQACSRILEALKNNRISLGS 378 (384)
T ss_dssp SSCCTTCCSCHHHHHHHHHHHTCCCC--
T ss_pred hccCCCcCCCHHHHHHHHHHHHHHhhcc
Confidence 9888876555556666677777665543
No 20
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.92 E-value=3.4e-24 Score=237.95 Aligned_cols=328 Identities=11% Similarity=0.051 Sum_probs=216.4
Q ss_pred CCEEEEEeCCCCCChhHHHHHHHHHHHHHC-C-CEEEEEEcCCCCc--hHHH-------------------------HHH
Q 001292 222 PPRIGLILGNMAKDSRSLLLITVVKNLQKL-G-YVFKIYAVRSGNS--HSLW-------------------------EQI 272 (1106)
Q Consensus 222 ~~RIalVlg~L~~gGesl~vv~LakaLqe~-G-yeVtV~t~~dg~~--~~i~-------------------------r~l 272 (1106)
++||+++++.. ++...+.++++.|++. | ++|.+++...+.. .... ..+
T Consensus 8 ~mkIl~v~~~~---~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (375)
T 3beo_A 8 RLKVMTIFGTR---PEAIKMAPLVLELQKHPEKIESIVTVTAQHRQMLDQVLSIFGITPDFDLNIMKDRQTLIDITTRGL 84 (375)
T ss_dssp CEEEEEEECSH---HHHHHHHHHHHHHTTCTTTEEEEEEECCSSSHHHHHHHHHHTCCCSEECCCCCTTCCHHHHHHHHH
T ss_pred CceEEEEecCc---HHHHHHHHHHHHHHhCCCCCCeEEEEcCCCHHHHHHHHHHcCCCCccccccCCCcccHHHHHHHHH
Confidence 47999998663 3344567899999887 5 8887766543210 1100 011
Q ss_pred hHHHHHhhccCccEEEEccc-cHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHh
Q 001292 273 AGQISILGQEQYSLIDWSIF-DGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVF 351 (1106)
Q Consensus 273 g~lvkiIr~~~pDiIh~~~~-~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l 351 (1106)
..+.++++..+||+||++.. ...+...+..+. .++|+|++.|+...... +... ...+... ...
T Consensus 85 ~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~----------~~ip~v~~~~~~~~~~~--~~~~--~~~~~~~--~~~ 148 (375)
T 3beo_A 85 EGLDKVMKEAKPDIVLVHGDTTTTFIASLAAFY----------NQIPVGHVEAGLRTWDK--YSPY--PEEMNRQ--LTG 148 (375)
T ss_dssp HHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHH----------TTCCEEEESCCCCCSCT--TSST--THHHHHH--HHH
T ss_pred HHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHH----------HCCCEEEEecccccccc--cCCC--hhHhhhh--HHh
Confidence 12456677789999999764 233333333322 57999987665421110 0000 0111111 112
Q ss_pred ccccEEEecCCChhhh--hcCCCCCCEEEeCCCCCCcccccccCcch-hHHHHHHHcCCCCCcEEEEEEcccCcccccc-
Q 001292 352 SRVNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAVEAYSKSH-EKYQLRKENGFLKDEIVVVVVGSSFFYNELS- 427 (1106)
Q Consensus 352 ~~AD~VIa~S~~~~~~--~~gi~~~KI~VIpN~GVDl~~~e~F~ps~-s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~- 427 (1106)
+.+|.+++++...... ..+++++++.+|+|..+|. ..+.+.. ....++.++ +++.++++++||+.. .
T Consensus 149 ~~~d~ii~~s~~~~~~~~~~g~~~~~i~vi~n~~~d~---~~~~~~~~~~~~~~~~~--~~~~~vl~~~gr~~~----~~ 219 (375)
T 3beo_A 149 VMADLHFSPTAKSATNLQKENKDESRIFITGNTAIDA---LKTTVKETYSHPVLEKL--GNNRLVLMTAHRREN----LG 219 (375)
T ss_dssp HHCSEEEESSHHHHHHHHHTTCCGGGEEECCCHHHHH---HHHHCCSSCCCHHHHTT--TTSEEEEEECCCGGG----TT
T ss_pred hhhheeeCCCHHHHHHHHHcCCCcccEEEECChhHhh---hhhhhhhhhhHHHHHhc--cCCCeEEEEeccccc----ch
Confidence 3489999998766554 3466777899999833776 3332221 123345554 345667788887654 4
Q ss_pred CCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHc-CCCCCcEEEcCCh--hhHHHHHHHcCeE
Q 001292 428 WDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRL-GLLEHSVRHYGFN--GDVNGVLLMADIV 504 (1106)
Q Consensus 428 Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaekl-GL~d~rV~flG~~--eDL~~LyaaADVf 504 (1106)
|+++.+++|++.+.++. |+++ + ++|.|++ ..+++.++++ +..+ +|+|+|.. .++..+|+.||++
T Consensus 220 K~~~~li~a~~~l~~~~-------~~~~-~-i~~~g~~---~~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~ad~~ 286 (375)
T 3beo_A 220 EPMRNMFRAIKRLVDKH-------EDVQ-V-VYPVHMN---PVVRETANDILGDYG-RIHLIEPLDVIDFHNVAARSYLM 286 (375)
T ss_dssp HHHHHHHHHHHHHHHHC-------TTEE-E-EEECCSC---HHHHHHHHHHHTTCT-TEEEECCCCHHHHHHHHHTCSEE
T ss_pred hHHHHHHHHHHHHHhhC-------CCeE-E-EEeCCCC---HHHHHHHHHHhhccC-CEEEeCCCCHHHHHHHHHhCcEE
Confidence 78999999998876432 6776 3 3466664 3344444433 3334 89997743 4899999999999
Q ss_pred EEccCCCCCCCcHHHHHHHHhCCCEEecC-CCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Q 001292 505 LYGSSQVEQGFPSLIVRAMTFGIPVITPD-FPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGR 583 (1106)
Q Consensus 505 V~PS~~EeEGFGlvLLEAMA~G~PVIASD-~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Ar 583 (1106)
|+|| |.+++||||||+|||+++ +++.+|++.++ +|+++++ |+++|+++|.++++|+++ +++|+++++
T Consensus 287 v~~s-------g~~~lEA~a~G~Pvi~~~~~~~~~e~v~~g-~g~~v~~-d~~~la~~i~~ll~~~~~---~~~~~~~~~ 354 (375)
T 3beo_A 287 LTDS-------GGVQEEAPSLGVPVLVLRDTTERPEGIEAG-TLKLAGT-DEETIFSLADELLSDKEA---HDKMSKASN 354 (375)
T ss_dssp EECC-------HHHHHHHHHHTCCEEECSSCCSCHHHHHTT-SEEECCS-CHHHHHHHHHHHHHCHHH---HHHHCCCCC
T ss_pred EECC-------CChHHHHHhcCCCEEEecCCCCCceeecCC-ceEEcCC-CHHHHHHHHHHHHhChHh---HhhhhhcCC
Confidence 9997 466999999999999996 59999999888 9999986 999999999999999987 588998888
Q ss_pred HHHHHhcHHHHHHHHHHHH
Q 001292 584 LHAKNMLALDCVTRYARIL 602 (1106)
Q Consensus 584 e~ake~fsee~v~~Y~eLy 602 (1106)
+++..+.++.+++.+.+++
T Consensus 355 ~~~~~~~~~~i~~~~~~~~ 373 (375)
T 3beo_A 355 PYGDGRASERIVEAILKHF 373 (375)
T ss_dssp TTCCSCHHHHHHHHHHHHT
T ss_pred CCCCCcHHHHHHHHHHHHh
Confidence 8775555566666666654
No 21
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=99.91 E-value=3e-24 Score=245.98 Aligned_cols=250 Identities=14% Similarity=0.143 Sum_probs=177.8
Q ss_pred CccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecCC
Q 001292 283 QYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDY 362 (1106)
Q Consensus 283 ~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~ 362 (1106)
++|+||++......+..+..+ .++|+|+++|+.......... ..........++.+|.|++.|.
T Consensus 124 ~~DvIh~~~~~~~~~~~~~~~-----------~~~p~v~~~h~~~~~~~~~~~-----~~~~~~~~~~~~~ad~vi~~S~ 187 (406)
T 2hy7_A 124 ESDVIVFESGIAVAFIELAKR-----------VNPAAKLVYRASDGLSTINVA-----SYIEREFDRVAPTLDVIALVSP 187 (406)
T ss_dssp HCSEEEEESSGGGGGHHHHHH-----------HCTTSEEEEEESSCHHHHTCC-----HHHHHHHHHHGGGCSEEEESCG
T ss_pred CCCEEEECCchHHHHHHHHHH-----------hCCCEEEEEeccchhhccccc-----HHHHHHHHHHHHhCCEEEEcCH
Confidence 578888544332222222221 468999999985431101000 1111223456889999999998
Q ss_pred ChhhhhcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHHHhHH
Q 001292 363 TLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLI 442 (1106)
Q Consensus 363 ~~~~~~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~ 442 (1106)
.......... ++.+||| |+|. +.|.+... ...++.++|+++|++.+ .||+ +.++ .+
T Consensus 188 ~~~~~~~~~~--~i~vipn-gvd~---~~f~~~~~--------~~~~~~~~i~~vGrl~~----~Kg~---~~~l---~~ 243 (406)
T 2hy7_A 188 AMAAEVVSRD--NVFHVGH-GVDH---NLDQLGDP--------SPYAEGIHAVAVGSMLF----DPEF---FVVA---SK 243 (406)
T ss_dssp GGGGGCSCST--TEEECCC-CBCT---THHHHHCS--------CSCCSSEEEEEECCTTB----CHHH---HHHH---HH
T ss_pred HHHHHHHhcC--CEEEEcC-CcCh---HhcCcccc--------cccCCCcEEEEEecccc----ccCH---HHHH---HH
Confidence 7766533332 8999998 8997 44432110 01123389999999987 6676 3222 21
Q ss_pred HHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCCh--hhHHHHHHHcCeEEEccCCCCCCCcHHHH
Q 001292 443 KYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFN--GDVNGVLLMADIVLYGSSQVEQGFPSLIV 520 (1106)
Q Consensus 443 k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~--eDL~~LyaaADVfV~PS~~EeEGFGlvLL 520 (1106)
..|+++ |+|+|+|+ ++++++.+ +|.|+|.. +++..+|+.||++|+||..| +||++++
T Consensus 244 -------~~~~~~-l~ivG~g~----------~~~~~l~~-~V~f~G~~~~~~l~~~~~~adv~v~ps~~E--~~~~~~l 302 (406)
T 2hy7_A 244 -------AFPQVT-FHVIGSGM----------GRHPGYGD-NVIVYGEMKHAQTIGYIKHARFGIAPYASE--QVPVYLA 302 (406)
T ss_dssp -------HCTTEE-EEEESCSS----------CCCTTCCT-TEEEECCCCHHHHHHHHHTCSEEECCBSCS--CCCTTHH
T ss_pred -------hCCCeE-EEEEeCch----------HHhcCCCC-CEEEcCCCCHHHHHHHHHhcCEEEECCCcc--cCchHHH
Confidence 137888 68889886 45567877 99999965 68999999999999999986 9999999
Q ss_pred HHH-------HhCCCEEecCCCCchhhhccCCeEEE-EcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHH
Q 001292 521 RAM-------TFGIPVITPDFPIIKEYVAEGAQVIF-FQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLAL 592 (1106)
Q Consensus 521 EAM-------A~G~PVIASD~gGI~EiV~Dg~nG~L-V~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fse 592 (1106)
||| |||+|||+++. +.++.+|++ ++++|+++|+++|.++++|++. ..++++.|+
T Consensus 303 EAm~Kl~eYla~G~PVIas~~------v~~~~~G~l~v~~~d~~~la~ai~~ll~~~~~------------~~~~~~sw~ 364 (406)
T 2hy7_A 303 DSSMKLLQYDFFGLPAVCPNA------VVGPYKSRFGYTPGNADSVIAAITQALEAPRV------------RYRQCLNWS 364 (406)
T ss_dssp HHCHHHHHHHHHTCCEEEEGG------GTCSCSSEEEECTTCHHHHHHHHHHHHHCCCC------------CCSCCCBHH
T ss_pred HHHHHHHHHhhCCCcEEEehh------cccCcceEEEeCCCCHHHHHHHHHHHHhCcch------------hhhhcCCHH
Confidence 999 99999999988 667789999 9999999999999999999872 223567788
Q ss_pred HHHHHHHHH--HHHHhcCCCC
Q 001292 593 DCVTRYARI--LENVLNFPSD 611 (1106)
Q Consensus 593 e~v~~Y~eL--yeslLk~Ps~ 611 (1106)
..++++.++ |+++...|.+
T Consensus 365 ~~a~~~~~~~~y~~~~~~~~~ 385 (406)
T 2hy7_A 365 DTTDRVLDPRAYPETRLYPHP 385 (406)
T ss_dssp HHHHHHHCGGGSGGGBSSCCC
T ss_pred HHHHHHHHhhcccccCcCCCC
Confidence 888899999 8877655443
No 22
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.90 E-value=1.6e-23 Score=213.56 Aligned_cols=186 Identities=13% Similarity=0.113 Sum_probs=156.5
Q ss_pred eCCCCCCcccccccC--cchh-----HHHHHHHcCCCCCcEEEEEEcccC-ccccccCCHHHHHHHHHHhHHHHHhhccC
Q 001292 379 IPGSPADVWAVEAYS--KSHE-----KYQLRKENGFLKDEIVVVVVGSSF-FYNELSWDYAVAMHDVGPLLIKYARRNSV 450 (1106)
Q Consensus 379 IpN~GVDl~~~e~F~--ps~s-----~~~LR~~lGL~~d~~VIL~VGRl~-~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~ 450 (1106)
||| |+|. +.|. +... +..+|++++++++ ++|+++|++. . .|+.+.+++|++.+.. ...
T Consensus 2 ipn-gvd~---~~f~~~~~~~~~~~~~~~~r~~~~~~~~-~~i~~~G~~~~~----~K~~~~li~a~~~l~~-----~~~ 67 (200)
T 2bfw_A 2 SHN-GIDC---SFWNESYLTGSRDERKKSLLSKFGMDEG-VTFMFIGRFDRG----QKGVDVLLKAIEILSS-----KKE 67 (200)
T ss_dssp ----CCCT---TTSSGGGSCSCHHHHHHHHHHHTTCCSC-EEEEEESCBCSS----SSCHHHHHHHHHHHTT-----SGG
T ss_pred CCC-ccCh---hhccccccccchhhHHHHHHHHcCCCCC-CEEEEeeccccc----cCCHHHHHHHHHHHHh-----hcc
Confidence 576 7998 6776 5432 6678999999754 5999999988 7 8999999999977640 012
Q ss_pred CCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEE-cCChh--hHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCC
Q 001292 451 EGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRH-YGFNG--DVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGI 527 (1106)
Q Consensus 451 ~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~f-lG~~e--DL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~ 527 (1106)
.|+++ |+|+|.++..+.+.+++++++++ +|+| .|+.. ++..+|+.||++|+||..| +||++++||||+|+
T Consensus 68 ~~~~~-l~i~G~~~~~~~~~l~~~~~~~~----~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e--~~~~~~~Ea~a~G~ 140 (200)
T 2bfw_A 68 FQEMR-FIIIGKGDPELEGWARSLEEKHG----NVKVITEMLSREFVRELYGSVDFVIIPSYFE--PFGLVALEAMCLGA 140 (200)
T ss_dssp GGGEE-EEEECCBCHHHHHHHHHHHHHCT----TEEEECSCCCHHHHHHHHTTCSEEEECCSCC--SSCHHHHHHHHTTC
T ss_pred CCCeE-EEEECCCChHHHHHHHHHHHhcC----CEEEEeccCCHHHHHHHHHHCCEEEECCCCC--CccHHHHHHHHCCC
Confidence 26788 68899987323488999999876 6999 99764 8999999999999999986 99999999999999
Q ss_pred CEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHHHHHhc
Q 001292 528 PVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS-NGKLSKFARTVASAGRLHAKNML 590 (1106)
Q Consensus 528 PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs-DpelRk~r~~mGe~Are~ake~f 590 (1106)
|||+++.+++.+++ ++.+|++++++|+++++++|.++++ |++. +.+|++++++.+++ |
T Consensus 141 PvI~~~~~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~---~~~~~~~a~~~~~~-f 199 (200)
T 2bfw_A 141 IPIASAVGGLRDII-TNETGILVKAGDPGELANAILKALELSRSD---LSKFRENCKKRAMS-F 199 (200)
T ss_dssp EEEEESCHHHHHHC-CTTTCEEECTTCHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHH-T
T ss_pred CEEEeCCCChHHHc-CCCceEEecCCCHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHHHh-c
Confidence 99999999999999 8899999999999999999999999 9987 68899999999887 5
No 23
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=99.89 E-value=7.3e-22 Score=237.66 Aligned_cols=303 Identities=10% Similarity=0.100 Sum_probs=202.8
Q ss_pred cCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCccc------ccchhhh-hh--h---------HHhH
Q 001292 282 EQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLA------NRLPVYV-ER--G---------FQNL 343 (1106)
Q Consensus 282 ~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls------~r~~~Y~-~~--g---------lekl 343 (1106)
..++++|+|.+...++..+.++. ...+|+|+|+|+..+. .....|. .. + +...
T Consensus 180 ~~pdIiH~HDW~tg~~~~~Lk~~---------~~~i~tVfTiH~telGR~lagqg~~~~y~~L~~~~~d~ea~~~~i~~~ 250 (725)
T 3nb0_A 180 QHAIVAHFHEWLAGVALPLCRKR---------RIDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHR 250 (725)
T ss_dssp SEEEEEEEESGGGCTHHHHHHHT---------TCSCEEEEEESSCHHHHHHTSSSCSCHHHHGGGCCHHHHHHHTTCHHH
T ss_pred CCCcEEEeCchhhhHHHHHHHHh---------CCCCCEEEEEecchhhhhhhhcCCCchhhhhhhcCCChhhhhhchhHH
Confidence 45899999999988877666643 2589999999995311 1111111 00 0 0112
Q ss_pred HHHHHHHhccccEEEecCCChhhh---hcCCCCCCEEEeCCCCCCcccccccCcch--------hHHHHHHH--------
Q 001292 344 LSYWKSVFSRVNVIVFPDYTLPML---YSVLDAGNFFVIPGSPADVWAVEAYSKSH--------EKYQLRKE-------- 404 (1106)
Q Consensus 344 is~~~~~l~~AD~VIa~S~~~~~~---~~gi~~~KI~VIpN~GVDl~~~e~F~ps~--------s~~~LR~~-------- 404 (1106)
....+..+..||.|+++|...+.. ..+.+.+. +||| |||. +.|.|.. .+..+.+.
T Consensus 251 ~~~EKaga~~AD~ITTVS~~yA~Ei~~Ll~r~~d~--iIpN-GID~---~~f~p~~~~~~~k~~aK~klq~~l~~~~~~~ 324 (725)
T 3nb0_A 251 YCIERAAAHSADVFTTVSQITAFEAEHLLKRKPDG--ILPN-GLNV---IKFQAFHEFQNLHALKKEKINDFVRGHFHGC 324 (725)
T ss_dssp HHHHHHHHHHSSEEEESSHHHHHHHHHHTSSCCSE--ECCC-CBCC---CCCSSTTHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhCCEEEECCHHHHHHHHHHhcCCCCE--EEcC-Cccc---cccCcchhhHHHHHHHHHHHHHHHHhhcccC
Confidence 223344567999999999665544 23444443 3998 8998 6776641 12222221
Q ss_pred cCCC-CCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCcc----------------
Q 001292 405 NGFL-KDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGY---------------- 467 (1106)
Q Consensus 405 lGL~-~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY---------------- 467 (1106)
++++ ++.+++..+||+.. .+||.+++++|+.+|............-+.| ||++.+...+
T Consensus 325 l~l~~dk~liifivgRle~---~nKGiDl~ieAl~~L~~~l~~~~~~~~vvaf-ii~p~~~~~~~~~~l~~~~~~~~l~~ 400 (725)
T 3nb0_A 325 FDFDLDNTLYFFIAGRYEY---KNKGADMFIEALARLNYRLKVSGSKKTVVAF-IVMPAKNNSFTVEALKGQAEVRALEN 400 (725)
T ss_dssp CCSCGGGEEEEEEESSCCT---TTTTHHHHHHHHHHHHHHHHHTTCCCEEEEE-EECCCCEEEECHHHHHHHHHHHHHHH
T ss_pred CCCCCCceeEEEEEEEecc---ccCCHHHHHHHHHHHHHHHhhccCCCcEEEE-EEeCCCCCCCchhhhcchhHHHHHHH
Confidence 2454 34456666899872 2899999999999987543222222233444 6666543221
Q ss_pred -----------------------------------------------------------------------HHHHHHHHH
Q 001292 468 -----------------------------------------------------------------------NDALQEVAS 476 (1106)
Q Consensus 468 -----------------------------------------------------------------------~eeLkeLae 476 (1106)
.+.+...++
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~~~~~~~~lpp~~TH~~~~~~~D~Il~~~r 480 (725)
T 3nb0_A 401 TVHEVTTSIGKRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIR 480 (725)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHHHCCCTTCCCCSBSEEETTGGGCHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHhcccccccCCCCCCCHHHhcChHHHHHHHHHHHhhccCCCCCCCeeeeecccCCccHHHHHHH
Confidence 112223345
Q ss_pred HcCCCC-----CcEEEcC-Ch--------hhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhc
Q 001292 477 RLGLLE-----HSVRHYG-FN--------GDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVA 542 (1106)
Q Consensus 477 klGL~d-----~rV~flG-~~--------eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~ 542 (1106)
++++.+ ..|+|.+ +. .++..+|+.||++|+||.+| +||++++||||||+|||+++.+|+.+.|.
T Consensus 481 ~l~L~N~~~drVKVIf~P~~L~~~d~lf~~d~~~~~~~advfV~PS~~E--gfGl~~LEAmA~G~PvI~s~~gG~~d~V~ 558 (725)
T 3nb0_A 481 QVQLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYE--PWGYTPAECTVMGVPSITTNVSGFGSYME 558 (725)
T ss_dssp HHTCCCCTTCSEEEEECCSCCCTTCSSSCCCHHHHHHHCSEEECCCSSB--SSCHHHHHHHHTTCCEEEETTBHHHHHHH
T ss_pred hcCCCCCcCCceeEEEeccccCCCCccchhHHHHHHhhceEEEeccccC--CCCHHHHHHHHcCCCEEEeCCCChhhhhh
Confidence 566654 1267775 22 26899999999999999997 99999999999999999999999999998
Q ss_pred cC-------CeEEEEc---CCCHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhc
Q 001292 543 EG-------AQVIFFQ---KDNPEGLSRAFSLFIS-----NGKLSKFARTVASAGRLHAKNMLALDCVTRYARILENVLN 607 (1106)
Q Consensus 543 Dg-------~nG~LV~---~~D~eeLAeAI~~LLs-----DpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLyeslLk 607 (1106)
++ .+|++++ +.|+++++++|.+++. ++.. +..|+.++++.++++.|+.++..|.++|+.++.
T Consensus 559 dg~~~~~~~~tG~lV~~rd~~d~ee~aeaLa~aL~~f~~~d~~~---r~~mr~~ar~~A~~FSWe~iA~~Yl~~Ye~aL~ 635 (725)
T 3nb0_A 559 DLIETNQAKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQ---RINQRNATEALSDLLDWKRMGLEYVKARQLALR 635 (725)
T ss_dssp TTSCHHHHHHTTEEEECCSSSCHHHHHHHHHHHHHHHHTCCHHH---HHHHHHHHHHGGGGGBHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCHHH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 75 3698884 3466666666655553 3433 578899999999888899999999999999876
Q ss_pred C
Q 001292 608 F 608 (1106)
Q Consensus 608 ~ 608 (1106)
.
T Consensus 636 ~ 636 (725)
T 3nb0_A 636 R 636 (725)
T ss_dssp H
T ss_pred h
Confidence 4
No 24
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.89 E-value=6.8e-22 Score=232.92 Aligned_cols=286 Identities=10% Similarity=-0.009 Sum_probs=198.1
Q ss_pred CccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecCC
Q 001292 283 QYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDY 362 (1106)
Q Consensus 283 ~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~ 362 (1106)
.+|+||+|.+...++..+..+. ..++|++++.|..- .....+........+ ...+-.+|.+.+++.
T Consensus 123 ~~DiV~vHdyhl~~l~~~lr~~---------~~~~~i~~~~H~pf-p~~~~~~~lp~~~~i----l~~ll~~d~i~f~~~ 188 (482)
T 1uqt_A 123 DDDIIWIHDYHLLPFAHELRKR---------GVNNRIGFFLHIPF-PTPEIFNALPTYDTL----LEQLCDYDLLGFQTE 188 (482)
T ss_dssp TTCEEEEESGGGTTHHHHHHHT---------TCCSCEEEECCSCC-CCHHHHTTSTTHHHH----HHHHTTSSEEEESSH
T ss_pred CCCEEEEECchHHHHHHHHHHh---------CCCCcEEEEEcCCC-CCHHHHhhCccHHHH----HHhhhccCeEEEECH
Confidence 4699999998876666665542 24789999999831 100000000000111 111224455444432
Q ss_pred Chhhh--------------------hcCCCCCCEEEeCCCCCCcccccccCcchh------HHHHHHHcCCCCCcEEEEE
Q 001292 363 TLPML--------------------YSVLDAGNFFVIPGSPADVWAVEAYSKSHE------KYQLRKENGFLKDEIVVVV 416 (1106)
Q Consensus 363 ~~~~~--------------------~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s------~~~LR~~lGL~~d~~VIL~ 416 (1106)
..... +.+ ...++.+||| |||. +.|.+... ...+|++++ ++++|++
T Consensus 189 ~~~~~f~~~~~~~l~~~~~~~~~~~~~g-~~~~v~vip~-GID~---~~f~~~~~~~~~~~~~~lr~~~~---~~~vil~ 260 (482)
T 1uqt_A 189 NDRLAFLDCLSNLTRVTTRSAKSHTAWG-KAFRTEVYPI-GIEP---KEIAKQAAGPLPPKLAQLKAELK---NVQNIFS 260 (482)
T ss_dssp HHHHHHHHHHHHHSCEEEETTTEEEETT-EEEEEEECCC-CCCH---HHHHHHHHSCCCHHHHHHHHHTT---TCEEEEE
T ss_pred HHHHHHHHHHHHHhCCccccCCeEEECC-eEEEEEEEec-cCCH---HHHHHHhcCcchHHHHHHHHHhC---CCEEEEE
Confidence 11110 111 2346889997 8998 55543211 456788876 6789999
Q ss_pred EcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCC-----CC--ccHHHHHHHHHHcC----CCC-Cc
Q 001292 417 VGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNS-----TD--GYNDALQEVASRLG----LLE-HS 484 (1106)
Q Consensus 417 VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~G-----pe--rY~eeLkeLaeklG----L~d-~r 484 (1106)
+||+.+ .||++.+|+|++.++++++.. ..+++ |+++|.. ++ .+.+++++++.+++ ..+ ..
T Consensus 261 VgRl~~----~Kgi~~ll~A~~~ll~~~p~~---~~~v~-Lv~vG~p~~~~~~~~~~l~~~l~~l~~~in~~~g~~~~~~ 332 (482)
T 1uqt_A 261 VERLDY----SKGLPERFLAYEALLEKYPQH---HGKIR-YTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTP 332 (482)
T ss_dssp ECCBCG----GGCHHHHHHHHHHHHHHCGGG---TTTEE-EEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBCS
T ss_pred EeCCcc----cCCHHHHHHHHHHHHHhCccc---cCcEE-EEEEECCCccchHHHHHHHHHHHHHHHHHhhhcccCCCce
Confidence 999998 999999999999988654221 13466 5677742 21 12345566665432 211 13
Q ss_pred EEE-cC--ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCC-----CEEecCCCCchhhhccCCeEEEEcCCCHH
Q 001292 485 VRH-YG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGI-----PVITPDFPIIKEYVAEGAQVIFFQKDNPE 556 (1106)
Q Consensus 485 V~f-lG--~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~-----PVIASD~gGI~EiV~Dg~nG~LV~~~D~e 556 (1106)
|++ .| +.+++..+|++|||+|+||..| |||++++||||||+ |||+|+++|..+.+. +|+++++.|++
T Consensus 333 v~~~~g~v~~~el~~ly~~ADv~v~pS~~E--GfgLv~lEAmA~g~~~~~gpvV~S~~~G~~~~l~---~g~lv~p~d~~ 407 (482)
T 1uqt_A 333 LYYLNQHFDRKLLMKIFRYSDVGLVTPLRD--GMNLVAKEYVAAQDPANPGVLVLSQFAGAANELT---SALIVNPYDRD 407 (482)
T ss_dssp EEEECSCCCHHHHHHHHHHCSEEEECCSSB--SCCHHHHHHHHHSCTTSCCEEEEETTBGGGGTCT---TSEEECTTCHH
T ss_pred EEEeCCCCCHHHHHHHHHHccEEEECCCcc--cCCchHHHHHHhCCCCCCCCEEEECCCCCHHHhC---CeEEECCCCHH
Confidence 664 56 4589999999999999999987 99999999999997 999999999988882 79999999999
Q ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 001292 557 GLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILENV 605 (1106)
Q Consensus 557 eLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLyesl 605 (1106)
++|++|.++++++.. .++++++++++.+.++.+...++.|.+.|+++
T Consensus 408 ~lA~ai~~lL~~~~~--~r~~~~~~~~~~v~~~s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 408 EVAAALDRALTMSLA--ERISRHAEMLDVIVKNDINHWQECFISDLKQI 454 (482)
T ss_dssp HHHHHHHHHHTCCHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHH--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 999999999997542 26788999999999988888888999999876
No 25
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.87 E-value=7.6e-22 Score=220.21 Aligned_cols=327 Identities=11% Similarity=-0.007 Sum_probs=207.1
Q ss_pred CEEEEEeCCCCCChhHHHHHHHHHHHHHC-CCEEEEEEcCCCCc--hHH-------------------------HHHHhH
Q 001292 223 PRIGLILGNMAKDSRSLLLITVVKNLQKL-GYVFKIYAVRSGNS--HSL-------------------------WEQIAG 274 (1106)
Q Consensus 223 ~RIalVlg~L~~gGesl~vv~LakaLqe~-GyeVtV~t~~dg~~--~~i-------------------------~r~lg~ 274 (1106)
+||+++++... +...+.+++++|++. |++|.+++...... ... ...+..
T Consensus 6 mkIl~v~~~~~---~~~~~~~l~~~L~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (376)
T 1v4v_A 6 KRVVLAFGTRP---EATKMAPVYLALRGIPGLKPLVLLTGQHREQLRQALSLFGIQEDRNLDVMQERQALPDLAARILPQ 82 (376)
T ss_dssp EEEEEEECSHH---HHHHHHHHHHHHHTSTTEEEEEEECSSCHHHHHHHHHTTTCCCSEECCCCSSCCCHHHHHHHHHHH
T ss_pred eEEEEEEeccH---HHHHHHHHHHHHHhCCCCceEEEEcCCcHHHHHHHHHHcCCCcccccccCCCCccHHHHHHHHHHH
Confidence 68999987642 234567899999998 89987765532110 000 011123
Q ss_pred HHHHhhccCccEEEEccccH-HHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhcc
Q 001292 275 QISILGQEQYSLIDWSIFDG-IIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSR 353 (1106)
Q Consensus 275 lvkiIr~~~pDiIh~~~~~~-i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~ 353 (1106)
+.++++..+||+||++.... .+...+..+. .++|++++ |..... +..+... ....... .....
T Consensus 83 l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~----------~~ip~v~~-~~~~~~-~~~~~~~--~~~~~~~--~~~~~ 146 (376)
T 1v4v_A 83 AARALKEMGADYVLVHGDTLTTFAVAWAAFL----------EGIPVGHV-EAGLRS-GNLKEPF--PEEANRR--LTDVL 146 (376)
T ss_dssp HHHHHHHTTCSEEEEESSCHHHHHHHHHHHH----------TTCCEEEE-TCCCCC-SCTTSST--THHHHHH--HHHHH
T ss_pred HHHHHHHcCCCEEEEeCChHHHHHHHHHHHH----------hCCCEEEE-eCCCcc-ccccCCC--chHHHHH--HHHHH
Confidence 55677778999999986533 2333343332 57998754 442211 1110000 0111111 12345
Q ss_pred ccEEEecCCChhhh--hcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHH
Q 001292 354 VNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYA 431 (1106)
Q Consensus 354 AD~VIa~S~~~~~~--~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~d 431 (1106)
+|.+++++...... ..+++++++.+++|.++|. ..+.+ ....++.++ .++.++++++||+.. .|+++
T Consensus 147 ~~~~~~~s~~~~~~l~~~g~~~~ki~vi~n~~~d~---~~~~~--~~~~~~~~~--~~~~~vl~~~gr~~~----~k~~~ 215 (376)
T 1v4v_A 147 TDLDFAPTPLAKANLLKEGKREEGILVTGQTGVDA---VLLAA--KLGRLPEGL--PEGPYVTVTMHRREN----WPLLS 215 (376)
T ss_dssp CSEEEESSHHHHHHHHTTTCCGGGEEECCCHHHHH---HHHHH--HHCCCCTTC--CSSCEEEECCCCGGG----GGGHH
T ss_pred hceeeCCCHHHHHHHHHcCCCcceEEEECCchHHH---Hhhhh--hhhHHHHhc--CCCCEEEEEeCcccc----hHHHH
Confidence 88999998765544 3467777899999854553 11110 011122223 245567778887654 56899
Q ss_pred HHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCCh--hhHHHHHHHcCeEEEccC
Q 001292 432 VAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFN--GDVNGVLLMADIVLYGSS 509 (1106)
Q Consensus 432 lLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~--eDL~~LyaaADVfV~PS~ 509 (1106)
.+++|++.+.++. |++++++++|.++. ..+.+++++. ..+ +|+|+|+. .++..+|+.||++|+||
T Consensus 216 ~ll~a~~~l~~~~-------~~~~lv~~~g~~~~-~~~~l~~~~~---~~~-~v~~~g~~g~~~~~~~~~~ad~~v~~S- 282 (376)
T 1v4v_A 216 DLAQALKRVAEAF-------PHLTFVYPVHLNPV-VREAVFPVLK---GVR-NFVLLDPLEYGSMAALMRASLLLVTDS- 282 (376)
T ss_dssp HHHHHHHHHHHHC-------TTSEEEEECCSCHH-HHHHHHHHHT---TCT-TEEEECCCCHHHHHHHHHTEEEEEESC-
T ss_pred HHHHHHHHHHhhC-------CCeEEEEECCCCHH-HHHHHHHHhc---cCC-CEEEECCCCHHHHHHHHHhCcEEEECC-
Confidence 9999998876432 67774333476542 1366666553 233 89999532 38999999999999997
Q ss_pred CCCCCCcHHHHHHHHhCCCEEec-CCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Q 001292 510 QVEQGFPSLIVRAMTFGIPVITP-DFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKN 588 (1106)
Q Consensus 510 ~EeEGFGlvLLEAMA~G~PVIAS-D~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake 588 (1106)
+ |+ ++||||||+|||++ +.++..+++.++ +|++++ .|+++|+++|.++++|++. +++|++++..
T Consensus 283 -~----g~-~lEA~a~G~PvI~~~~~~~~~~~~~~g-~g~lv~-~d~~~la~~i~~ll~d~~~---~~~~~~~~~~---- 347 (376)
T 1v4v_A 283 -G----GL-QEEGAALGVPVVVLRNVTERPEGLKAG-ILKLAG-TDPEGVYRVVKGLLENPEE---LSRMRKAKNP---- 347 (376)
T ss_dssp -H----HH-HHHHHHTTCCEEECSSSCSCHHHHHHT-SEEECC-SCHHHHHHHHHHHHTCHHH---HHHHHHSCCS----
T ss_pred -c----CH-HHHHHHcCCCEEeccCCCcchhhhcCC-ceEECC-CCHHHHHHHHHHHHhChHh---hhhhcccCCC----
Confidence 3 44 88999999999987 678999988665 898886 5999999999999999987 5777765422
Q ss_pred hcHHHHHHHHHHHHHHHhc
Q 001292 589 MLALDCVTRYARILENVLN 607 (1106)
Q Consensus 589 ~fsee~v~~Y~eLyeslLk 607 (1106)
+.+....+++.++++++++
T Consensus 348 ~~~~~~~~~i~~~i~~~~~ 366 (376)
T 1v4v_A 348 YGDGKAGLMVARGVAWRLG 366 (376)
T ss_dssp SCCSCHHHHHHHHHHHHTT
T ss_pred CCCChHHHHHHHHHHHHhc
Confidence 2223455677777777765
No 26
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.86 E-value=4.7e-21 Score=190.00 Aligned_cols=159 Identities=17% Similarity=0.274 Sum_probs=135.5
Q ss_pred cEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCC
Q 001292 411 EIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGF 490 (1106)
Q Consensus 411 ~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~ 490 (1106)
.++|+++|++.+ .||++.+++|+..+. ..|+++ |+++|.++.. +.++++++++++ +|.+ |+
T Consensus 2 ~~~i~~~G~~~~----~Kg~~~li~a~~~l~--------~~~~~~-l~i~G~g~~~--~~~~~~~~~~~~---~v~~-g~ 62 (166)
T 3qhp_A 2 PFKIAMVGRYSN----EKNQSVLIKAVALSK--------YKQDIV-LLLKGKGPDE--KKIKLLAQKLGV---KAEF-GF 62 (166)
T ss_dssp CEEEEEESCCST----TTTHHHHHHHHHTCT--------TGGGEE-EEEECCSTTH--HHHHHHHHHHTC---EEEC-CC
T ss_pred ceEEEEEeccch----hcCHHHHHHHHHHhc--------cCCCeE-EEEEeCCccH--HHHHHHHHHcCC---eEEE-ee
Confidence 578999999887 899999999997652 126888 6889999875 999999999887 5888 86
Q ss_pred --hhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCC-CEEe-cCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHH
Q 001292 491 --NGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGI-PVIT-PDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFI 566 (1106)
Q Consensus 491 --~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~-PVIA-SD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LL 566 (1106)
.+++..+|+.||++|+||..| +||++++||||+|+ |||+ ++.++..+++.++.+ ++++.|+++++++|.+++
T Consensus 63 ~~~~~~~~~~~~adv~v~ps~~e--~~~~~~~Eama~G~vPvi~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~i~~l~ 138 (166)
T 3qhp_A 63 VNSNELLEILKTCTLYVHAANVE--SEAIACLEAISVGIVPVIANSPLSATRQFALDERS--LFEPNNAKDLSAKIDWWL 138 (166)
T ss_dssp CCHHHHHHHHTTCSEEEECCCSC--CCCHHHHHHHHTTCCEEEECCTTCGGGGGCSSGGG--EECTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhCCEEEECCccc--CccHHHHHHHhcCCCcEEeeCCCCchhhhccCCce--EEcCCCHHHHHHHHHHHH
Confidence 478999999999999999986 99999999999997 9999 578899999977644 788899999999999999
Q ss_pred hCcccHHHHHHHHHHHHHHHHHhcHHHHH
Q 001292 567 SNGKLSKFARTVASAGRLHAKNMLALDCV 595 (1106)
Q Consensus 567 sDpelRk~r~~mGe~Are~ake~fsee~v 595 (1106)
+|++. +.+|++++++.++++.|+.++
T Consensus 139 ~~~~~---~~~~~~~~~~~~~~~s~~~~~ 164 (166)
T 3qhp_A 139 ENKLE---RERMQNEYAKSALNYTLENSV 164 (166)
T ss_dssp HCHHH---HHHHHHHHHHHHHHHC-----
T ss_pred hCHHH---HHHHHHHHHHHHHHCChhhhh
Confidence 99987 688999999999777776554
No 27
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.84 E-value=1.1e-20 Score=191.31 Aligned_cols=145 Identities=16% Similarity=0.097 Sum_probs=130.3
Q ss_pred cCCCCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHH--HcCCCC
Q 001292 405 NGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVAS--RLGLLE 482 (1106)
Q Consensus 405 lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLae--klGL~d 482 (1106)
+.++.++++|+++|++.. .|+.+.+++|++.+ ++++ |+|+|.++.. +.++++++ .+++.+
T Consensus 17 ~~~~~~~~~i~~~G~~~~----~Kg~~~li~a~~~l-----------~~~~-l~i~G~~~~~--~~l~~~~~~~~~~l~~ 78 (177)
T 2f9f_A 17 FKFKCYGDFWLSVNRIYP----EKRIELQLEVFKKL-----------QDEK-LYIVGWFSKG--DHAERYARKIMKIAPD 78 (177)
T ss_dssp CCCCCCCSCEEEECCSSG----GGTHHHHHHHHHHC-----------TTSC-EEEEBCCCTT--STHHHHHHHHHHHSCT
T ss_pred cccCCCCCEEEEEecccc----ccCHHHHHHHHHhC-----------CCcE-EEEEecCccH--HHHHHHHHhhhcccCC
Confidence 456778889999999887 89999999999655 4566 6889998875 78888888 889987
Q ss_pred CcEEEcCCh--hhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhccCCeEEEEcCCCHHHHHH
Q 001292 483 HSVRHYGFN--GDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSR 560 (1106)
Q Consensus 483 ~rV~flG~~--eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAe 560 (1106)
+|.|.|+. +++..+|+.||++|+||..| +||++++||||||+|||+++.+++.+++.++.+|+++ +.|++++++
T Consensus 79 -~v~~~g~~~~~e~~~~~~~adi~v~ps~~e--~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~-~~d~~~l~~ 154 (177)
T 2f9f_A 79 -NVKFLGSVSEEELIDLYSRCKGLLCTAKDE--DFGLTPIEAMASGKPVIAVNEGGFKETVINEKTGYLV-NADVNEIID 154 (177)
T ss_dssp -TEEEEESCCHHHHHHHHHHCSEEEECCSSC--CSCHHHHHHHHTTCCEEEESSHHHHHHCCBTTTEEEE-CSCHHHHHH
T ss_pred -cEEEeCCCCHHHHHHHHHhCCEEEeCCCcC--CCChHHHHHHHcCCcEEEeCCCCHHHHhcCCCccEEe-CCCHHHHHH
Confidence 99999966 45999999999999999976 9999999999999999999999999999999999999 899999999
Q ss_pred HHHHHHhCccc
Q 001292 561 AFSLFISNGKL 571 (1106)
Q Consensus 561 AI~~LLsDpel 571 (1106)
+|.++++|++.
T Consensus 155 ~i~~l~~~~~~ 165 (177)
T 2f9f_A 155 AMKKVSKNPDK 165 (177)
T ss_dssp HHHHHHHCTTT
T ss_pred HHHHHHhCHHH
Confidence 99999999986
No 28
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.82 E-value=6.4e-19 Score=207.73 Aligned_cols=285 Identities=11% Similarity=-0.034 Sum_probs=204.1
Q ss_pred CccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHh-HHHHHHHHhccccEEEecC
Q 001292 283 QYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQN-LLSYWKSVFSRVNVIVFPD 361 (1106)
Q Consensus 283 ~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~glek-lis~~~~~l~~AD~VIa~S 361 (1106)
..|+|-+|.|...++..+..+.. .+.++.+..|-.- ...-.+... .. +.......+-.+|.|.+++
T Consensus 149 ~~D~VwVhDYhL~llp~~lR~~~---------~~~~igfFlHiPf-Ps~e~f~~L---p~~~r~ell~gll~~DligF~t 215 (496)
T 3t5t_A 149 ADPVYLVHDYQLVGVPALLREQR---------PDAPILLFVHIPW-PSADYWRIL---PKEIRTGILHGMLPATTIGFFA 215 (496)
T ss_dssp SSCEEEEESGGGTTHHHHHHHHC---------TTSCEEEECCSCC-CCHHHHTTS---CHHHHHHHHHHHTTSSEEEESS
T ss_pred CCCEEEEeCccHhHHHHHHHhhC---------CCCeEEEEEcCCC-CCHHHHhhC---cHhHHHHHHHHHHhCCEEEEec
Confidence 45799999999988887776543 5678898888741 111011111 10 1122234466999999998
Q ss_pred CChhhh-------hc-CCC-------------CCCEEEeCCCCCCcccccccCcchh--HHHHHHHcCCCCCcEEEEEEc
Q 001292 362 YTLPML-------YS-VLD-------------AGNFFVIPGSPADVWAVEAYSKSHE--KYQLRKENGFLKDEIVVVVVG 418 (1106)
Q Consensus 362 ~~~~~~-------~~-gi~-------------~~KI~VIpN~GVDl~~~e~F~ps~s--~~~LR~~lGL~~d~~VIL~VG 418 (1106)
...... .. +.+ ..++.++|+ |||. +.|.+... ...+|++++ ++++|+++|
T Consensus 216 ~~y~~~Fl~~~~r~l~g~~~~~~~~~v~~~gr~v~v~viP~-GID~---~~f~~~~~~~~~~lr~~~~---~~~lIl~Vg 288 (496)
T 3t5t_A 216 DRWCRNFLESVADLLPDARIDREAMTVEWRGHRTRLRTMPL-GYSP---LTLDGRNPQLPEGIEEWAD---GHRLVVHSG 288 (496)
T ss_dssp HHHHHHHHHHHHHHCTTCEEETTTTEEEETTEEEEEEECCC-CBCG---GGC----CCCCTTHHHHHT---TSEEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCcccccCCeEEECCEEEEEEEecc-EeCH---HHhchhhHHHHHHHHHHhC---CceEEEEcc
Confidence 655432 11 211 125678886 8998 66655321 256777776 678999999
Q ss_pred ccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEc-----CCCC--ccHHHHHHHHHHcC----CCCCcEEE
Q 001292 419 SSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCG-----NSTD--GYNDALQEVASRLG----LLEHSVRH 487 (1106)
Q Consensus 419 Rl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG-----~Gpe--rY~eeLkeLaeklG----L~d~rV~f 487 (1106)
|+.. .||+..+|+|+ +++++++. -. ++. |+++| ++++ .+..++++++.+++ .. .|+|
T Consensus 289 RLd~----~KGi~~lL~Af-~ll~~~P~---~~-~v~-Lv~Vg~psr~~~~~y~~l~~~l~~lv~~in~~~g~~--~V~f 356 (496)
T 3t5t_A 289 RTDP----IKNAERAVRAF-VLAARGGG---LE-KTR-MLVRMNPNRLYVPANADYVHRVETAVAEANAELGSD--TVRI 356 (496)
T ss_dssp ESSG----GGCHHHHHHHH-HHHHHTSS---CT-TEE-EEEEEECCCTTSHHHHHHHHHHHHHHHHHHHHHCTT--SEEE
T ss_pred cCcc----ccCHHHHHHHH-HHHHhCcc---cc-eEE-EEEEECCCCCCchHHHHHHHHHHHHHHHhccccCCc--CEEE
Confidence 9998 99999999999 88865411 11 355 45554 2322 12345556665543 22 5889
Q ss_pred cCC--hhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhC---CCEEecCCCCchhhhccCCeEEEEcCCCHHHHHHHH
Q 001292 488 YGF--NGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFG---IPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAF 562 (1106)
Q Consensus 488 lG~--~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G---~PVIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI 562 (1106)
+|. .+++..+|++|||+++||..| |||++++|||||| .|+|+|+++|..+.+ +.+|++++|.|++++|++|
T Consensus 357 ~g~v~~~el~aly~~ADv~vv~SlrE--GfgLv~~EamA~~~~~g~lVlSe~aGa~~~l--~~~allVnP~D~~~lA~AI 432 (496)
T 3t5t_A 357 DNDNDVNHTIACFRRADLLIFNSTVD--GQNLSTFEAPLVNERDADVILSETCGAAEVL--GEYCRSVNPFDLVEQAEAI 432 (496)
T ss_dssp EECCCHHHHHHHHHHCSEEEECCSSB--SCCSHHHHHHHHCSSCCEEEEETTBTTHHHH--GGGSEEECTTBHHHHHHHH
T ss_pred eCCCCHHHHHHHHHhccEEEECcccc--cCChhHHHHHHhCCCCCCEEEeCCCCCHHHh--CCCEEEECCCCHHHHHHHH
Confidence 884 578999999999999999997 9999999999997 899999999999999 4479999999999999999
Q ss_pred HHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 001292 563 SLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILENV 605 (1106)
Q Consensus 563 ~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLyesl 605 (1106)
.++++++.. +++++.+++++.+.++.....+..+.+-++..
T Consensus 433 ~~aL~m~~~--er~~r~~~~~~~V~~~d~~~W~~~fl~~L~~~ 473 (496)
T 3t5t_A 433 SAALAAGPR--QRAEAAARRRDAARPWTLEAWVQAQLDGLAAD 473 (496)
T ss_dssp HHHHHCCHH--HHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHH--HHHHHHHHHHHHHHHCCHHHHHHHHHHHHhhc
Confidence 999998863 36778889999999988888888877777655
No 29
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.77 E-value=6.6e-18 Score=193.51 Aligned_cols=313 Identities=15% Similarity=0.127 Sum_probs=200.8
Q ss_pred CEEEEEeCCCCCChhHHHHHHHHHHHHHC-CCEEEEEEcCCCC--chHH-------------------------HHHHhH
Q 001292 223 PRIGLILGNMAKDSRSLLLITVVKNLQKL-GYVFKIYAVRSGN--SHSL-------------------------WEQIAG 274 (1106)
Q Consensus 223 ~RIalVlg~L~~gGesl~vv~LakaLqe~-GyeVtV~t~~dg~--~~~i-------------------------~r~lg~ 274 (1106)
+||++|+|.- ++-+.+.+++++|++. |+++.++.++... .... .+.+..
T Consensus 26 ~ki~~v~Gtr---~~~~~~a~li~~l~~~~~~~~~~~~tG~h~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~ 102 (396)
T 3dzc_A 26 KKVLIVFGTR---PEAIKMAPLVQQLCQDNRFVAKVCVTGQHREMLDQVLELFSITPDFDLNIMEPGQTLNGVTSKILLG 102 (396)
T ss_dssp EEEEEEECSH---HHHHHHHHHHHHHHHCTTEEEEEEECCSSSHHHHHHHHHTTCCCSEECCCCCTTCCHHHHHHHHHHH
T ss_pred CeEEEEEecc---HhHHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHhcCCCCceeeecCCCCCCHHHHHHHHHHH
Confidence 6899998764 3556778999999997 7888766543221 1111 112223
Q ss_pred HHHHhhccCccEEEEccccHH-HHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhcc
Q 001292 275 QISILGQEQYSLIDWSIFDGI-IADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSR 353 (1106)
Q Consensus 275 lvkiIr~~~pDiIh~~~~~~i-~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~ 353 (1106)
+.++++..+||+++.+..... +...+..+ ..+||++.. + .++..+..+.+.. ...... ..-+.
T Consensus 103 l~~~l~~~kPDvVi~~g~~~~~~~~~~aa~----------~~~IPv~h~-~-ag~rs~~~~~~~~--~~~~r~--~~~~~ 166 (396)
T 3dzc_A 103 MQQVLSSEQPDVVLVHGDTATTFAASLAAY----------YQQIPVGHV-E-AGLRTGNIYSPWP--EEGNRK--LTAAL 166 (396)
T ss_dssp HHHHHHHHCCSEEEEETTSHHHHHHHHHHH----------TTTCCEEEE-T-CCCCCSCTTSSTT--HHHHHH--HHHHT
T ss_pred HHHHHHhcCCCEEEEECCchhHHHHHHHHH----------HhCCCEEEE-E-CCccccccccCCc--HHHHHH--HHHHh
Confidence 677788899999999764443 44344443 378998754 3 2221111110110 111111 11246
Q ss_pred ccEEEecCCChhhh--hcCCCCCCEEEeCCCCCCcccccccCcch--h----HHHHHHHcC-CCCCcEEEEEEc-ccCcc
Q 001292 354 VNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAVEAYSKSH--E----KYQLRKENG-FLKDEIVVVVVG-SSFFY 423 (1106)
Q Consensus 354 AD~VIa~S~~~~~~--~~gi~~~KI~VIpN~GVDl~~~e~F~ps~--s----~~~LR~~lG-L~~d~~VIL~VG-Rl~~y 423 (1106)
+|.+++++...... ..+++++++.+++|.++|. ..+.+.. . ...+++++| ++++.+++++.| |...
T Consensus 167 a~~~~~~se~~~~~l~~~G~~~~ki~vvGn~~~d~---~~~~~~~~~~~~~~~~~~r~~lg~l~~~~~~vlv~~hR~~~- 242 (396)
T 3dzc_A 167 TQYHFAPTDTSRANLLQENYNAENIFVTGNTVIDA---LLAVREKIHTDMDLQATLESQFPMLDASKKLILVTGHRRES- 242 (396)
T ss_dssp CSEEEESSHHHHHHHHHTTCCGGGEEECCCHHHHH---HHHHHHHHHHCHHHHHHHHHTCTTCCTTSEEEEEECSCBCC-
T ss_pred cCEEECCCHHHHHHHHHcCCCcCcEEEECCcHHHH---HHHhhhhcccchhhHHHHHHHhCccCCCCCEEEEEECCccc-
Confidence 88999998765444 4578888999999866664 1221111 1 266788899 455555555444 4222
Q ss_pred ccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCCh--hhHHHHHHHc
Q 001292 424 NELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFN--GDVNGVLLMA 501 (1106)
Q Consensus 424 ~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~--eDL~~LyaaA 501 (1106)
..|+++.+++|++.+.+++ |++++++.+|.++. ..+.++++ ++..+ +|+++++. .++..+|+.|
T Consensus 243 --~~~~~~~ll~A~~~l~~~~-------~~~~~v~~~g~~~~-~~~~l~~~---~~~~~-~v~~~~~lg~~~~~~l~~~a 308 (396)
T 3dzc_A 243 --FGGGFERICQALITTAEQH-------PECQILYPVHLNPN-VREPVNKL---LKGVS-NIVLIEPQQYLPFVYLMDRA 308 (396)
T ss_dssp --CTTHHHHHHHHHHHHHHHC-------TTEEEEEECCBCHH-HHHHHHHH---TTTCT-TEEEECCCCHHHHHHHHHHC
T ss_pred --chhHHHHHHHHHHHHHHhC-------CCceEEEEeCCChH-HHHHHHHH---HcCCC-CEEEeCCCCHHHHHHHHHhc
Confidence 1256788999998776432 77775443465432 12333332 34444 89998866 5888999999
Q ss_pred CeEEEccCCCCCCCcHHHHHHHHhCCCEEec-CCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHH
Q 001292 502 DIVLYGSSQVEQGFPSLIVRAMTFGIPVITP-DFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVAS 580 (1106)
Q Consensus 502 DVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS-D~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe 580 (1106)
|++|.+| | |.. +|||++|+|||++ +.++..|.+.+| ++++++ .|+++|+++|..+++|++. +++|++
T Consensus 309 d~vv~~S-----G-g~~-~EA~a~G~PvV~~~~~~~~~e~v~~G-~~~lv~-~d~~~l~~ai~~ll~d~~~---~~~m~~ 376 (396)
T 3dzc_A 309 HIILTDS-----G-GIQ-EEAPSLGKPVLVMRETTERPEAVAAG-TVKLVG-TNQQQICDALSLLLTDPQA---YQAMSQ 376 (396)
T ss_dssp SEEEESC-----S-GGG-TTGGGGTCCEEECCSSCSCHHHHHHT-SEEECT-TCHHHHHHHHHHHHHCHHH---HHHHHT
T ss_pred CEEEECC-----c-cHH-HHHHHcCCCEEEccCCCcchHHHHcC-ceEEcC-CCHHHHHHHHHHHHcCHHH---HHHHhh
Confidence 9999886 2 333 8999999999998 788888998887 567776 4899999999999999987 577777
Q ss_pred HHHH
Q 001292 581 AGRL 584 (1106)
Q Consensus 581 ~Are 584 (1106)
++..
T Consensus 377 ~~~~ 380 (396)
T 3dzc_A 377 AHNP 380 (396)
T ss_dssp SCCT
T ss_pred ccCC
Confidence 6543
No 30
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.74 E-value=2.7e-17 Score=189.10 Aligned_cols=331 Identities=13% Similarity=0.060 Sum_probs=205.4
Q ss_pred CCEEEEEeCCCCCChhHHHHHHHHHHHHHC--CCEEEEEEcCCC--Cc-------------------------hHHHHHH
Q 001292 222 PPRIGLILGNMAKDSRSLLLITVVKNLQKL--GYVFKIYAVRSG--NS-------------------------HSLWEQI 272 (1106)
Q Consensus 222 ~~RIalVlg~L~~gGesl~vv~LakaLqe~--GyeVtV~t~~dg--~~-------------------------~~i~r~l 272 (1106)
++||++|+|.- ++-+.+.+++++|++. |+++.++.++.. .. ....+.+
T Consensus 27 ~~kI~~v~Gtr---~~~~~~a~li~~l~~~~~~~~~~~~~tG~h~~m~~~~~~~~~i~~~~~l~v~~~~~~~~~~~~~~~ 103 (403)
T 3ot5_A 27 KIKVMSIFGTR---PEAIKMAPLVLALEKEPETFESTVVITAQHREMLDQVLEIFDIKPDIDLDIMKKGQTLAEITSRVM 103 (403)
T ss_dssp CEEEEEEECSH---HHHHHHHHHHHHHHTCTTTEEEEEEECC-----CHHHHHHTTCCCSEECCCCC-CCCHHHHHHHHH
T ss_pred cceEEEEEecC---hhHHHHHHHHHHHHhCCCCCcEEEEEecCcHHHHHHHHHhcCCCCCcccccCCCCCCHHHHHHHHH
Confidence 46899998763 3456668999999998 688776644321 00 1112222
Q ss_pred hHHHHHhhccCccEEEEcccc-HHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHh
Q 001292 273 AGQISILGQEQYSLIDWSIFD-GIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVF 351 (1106)
Q Consensus 273 g~lvkiIr~~~pDiIh~~~~~-~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l 351 (1106)
..+.++++..+||+++++... ..+...+..+. .+||++.. +. ++..+-.+.+.. ......+ .-
T Consensus 104 ~~l~~~l~~~kPD~Vi~~gd~~~~l~~~laA~~----------~~IPv~h~-~a-glrs~~~~~~~p--~~~~r~~--~~ 167 (403)
T 3ot5_A 104 NGINEVIAAENPDIVLVHGDTTTSFAAGLATFY----------QQKMLGHV-EA-GLRTWNKYSPFP--EEMNRQL--TG 167 (403)
T ss_dssp HHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHH----------TTCEEEEE-SC-CCCCSCTTSSTT--HHHHHHH--HH
T ss_pred HHHHHHHHHcCCCEEEEECCchhHHHHHHHHHH----------hCCCEEEE-EC-CccccccccCCc--HHHHHHH--HH
Confidence 336778888999999997653 33333444432 68998654 32 221111110110 1111111 12
Q ss_pred ccccEEEecCCChhhh--hcCCCCCCEEEeCCCCCCcccccccCcch-hHHHHHHHcCCCCCcEEEEEEcccCccccccC
Q 001292 352 SRVNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAVEAYSKSH-EKYQLRKENGFLKDEIVVVVVGSSFFYNELSW 428 (1106)
Q Consensus 352 ~~AD~VIa~S~~~~~~--~~gi~~~KI~VIpN~GVDl~~~e~F~ps~-s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~K 428 (1106)
..+|.+++++...... ..|++++++.+++|.++|. ..+.+.. .....++++ +++..+++.+||... ..+
T Consensus 168 ~~a~~~~~~se~~~~~l~~~Gi~~~~i~vvGn~~~D~---~~~~~~~~~~~~~~~~l--~~~~~vlv~~~r~~~---~~~ 239 (403)
T 3ot5_A 168 VMADIHFSPTKQAKENLLAEGKDPATIFVTGNTAIDA---LKTTVQKDYHHPILENL--GDNRLILMTAHRREN---LGE 239 (403)
T ss_dssp HHCSEEEESSHHHHHHHHHTTCCGGGEEECCCHHHHH---HHHHSCTTCCCHHHHSC--TTCEEEEECCCCHHH---HTT
T ss_pred HhcCEEECCCHHHHHHHHHcCCCcccEEEeCCchHHH---HHhhhhhhcchHHHHhc--cCCCEEEEEeCcccc---cCc
Confidence 3478889988766544 5688888999999877775 2222211 112344454 334444455554321 124
Q ss_pred CHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHH-cCCCCCcEEEcCChh--hHHHHHHHcCeEE
Q 001292 429 DYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASR-LGLLEHSVRHYGFNG--DVNGVLLMADIVL 505 (1106)
Q Consensus 429 g~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaek-lGL~d~rV~flG~~e--DL~~LyaaADVfV 505 (1106)
+...+++|+..+.+++ |++++++.+|.++ .+++.+++ ++..+ +|+++|+.+ ++..+|+.||++|
T Consensus 240 ~l~~ll~a~~~l~~~~-------~~~~~v~~~~~~~-----~~~~~l~~~~~~~~-~v~l~~~l~~~~~~~l~~~ad~vv 306 (403)
T 3ot5_A 240 PMQGMFEAVREIVESR-------EDTELVYPMHLNP-----AVREKAMAILGGHE-RIHLIEPLDAIDFHNFLRKSYLVF 306 (403)
T ss_dssp HHHHHHHHHHHHHHHC-------TTEEEEEECCSCH-----HHHHHHHHHHTTCT-TEEEECCCCHHHHHHHHHHEEEEE
T ss_pred HHHHHHHHHHHHHHhC-------CCceEEEecCCCH-----HHHHHHHHHhCCCC-CEEEeCCCCHHHHHHHHHhcCEEE
Confidence 5788999998776433 7777433334433 23333333 34444 899999774 8999999999998
Q ss_pred EccCCCCCCCcHHHHHHHHhCCCEEec-CCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Q 001292 506 YGSSQVEQGFPSLIVRAMTFGIPVITP-DFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRL 584 (1106)
Q Consensus 506 ~PS~~EeEGFGlvLLEAMA~G~PVIAS-D~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are 584 (1106)
.+| |...+|||++|+|||+. +.++..|.+..| +|++++. |+++|+++|..+++|++. +++|++++..
T Consensus 307 ~~S-------Gg~~~EA~a~g~PvV~~~~~~~~~e~v~~g-~~~lv~~-d~~~l~~ai~~ll~~~~~---~~~m~~~~~~ 374 (403)
T 3ot5_A 307 TDS-------GGVQEEAPGMGVPVLVLRDTTERPEGIEAG-TLKLIGT-NKENLIKEALDLLDNKES---HDKMAQAANP 374 (403)
T ss_dssp ECC-------HHHHHHGGGTTCCEEECCSSCSCHHHHHHT-SEEECCS-CHHHHHHHHHHHHHCHHH---HHHHHHSCCT
T ss_pred ECC-------ccHHHHHHHhCCCEEEecCCCcchhheeCC-cEEEcCC-CHHHHHHHHHHHHcCHHH---HHHHHhhcCc
Confidence 776 23339999999999998 788888888766 8888875 999999999999999987 5677765443
Q ss_pred HHHHhcHHHHHHHHHHHHHHHhcC
Q 001292 585 HAKNMLALDCVTRYARILENVLNF 608 (1106)
Q Consensus 585 ~ake~fsee~v~~Y~eLyeslLk~ 608 (1106)
+. .....++..+++.+.+..
T Consensus 375 ~g----~~~aa~rI~~~l~~~l~~ 394 (403)
T 3ot5_A 375 YG----DGFAANRILAAIKSHFEE 394 (403)
T ss_dssp TC----CSCHHHHHHHHHHHHHTC
T ss_pred cc----CCcHHHHHHHHHHHHhCC
Confidence 32 233444556666666653
No 31
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.73 E-value=8.1e-17 Score=181.49 Aligned_cols=326 Identities=13% Similarity=0.026 Sum_probs=198.7
Q ss_pred CCCCCCCCCCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCC--------C----ch---------------
Q 001292 214 STPRFGVRPPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSG--------N----SH--------------- 266 (1106)
Q Consensus 214 Sv~r~g~r~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg--------~----~~--------------- 266 (1106)
|......+++||+++.+. .+|....+++++++|+++||+|++++...- - ..
T Consensus 12 ~~~~~~~~~MrIl~~~~~--~~Gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 89 (412)
T 3otg_A 12 SSGHIEGRHMRVLFASLG--THGHTYPLLPLATAARAAGHEVTFATGEGFAGTLRKLGFEPVATGMPVFDGFLAALRIRF 89 (412)
T ss_dssp ------CCSCEEEEECCS--SHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCEEEECCCCHHHHHHHHHHHHH
T ss_pred ccCCcccceeEEEEEcCC--CcccHHHHHHHHHHHHHCCCEEEEEccHHHHHHHHhcCCceeecCcccccchhhhhhhhh
Confidence 344456678899999855 456667788999999999999999986321 0 00
Q ss_pred ------------------HHHHH------HhHHHHHhhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEE
Q 001292 267 ------------------SLWEQ------IAGQISILGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWI 322 (1106)
Q Consensus 267 ------------------~i~r~------lg~lvkiIr~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~t 322 (1106)
..+.. ...+.++++..+||+|+.+..... ..+..+. .++|+|.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvVv~~~~~~~--~~~aa~~----------~giP~v~~ 157 (412)
T 3otg_A 90 DTDSPEGLTPEQLSELPQIVFGRVIPQRVFDELQPVIERLRPDLVVQEISNYG--AGLAALK----------AGIPTICH 157 (412)
T ss_dssp SCSCCTTCCHHHHTTSHHHHHHTHHHHHHHHHHHHHHHHHCCSEEEEETTCHH--HHHHHHH----------HTCCEEEE
T ss_pred cccCCccCChhHhhHHHHHHHhccchHHHHHHHHHHHHhcCCCEEEECchhhH--HHHHHHH----------cCCCEEEe
Confidence 00011 123566777789999887643322 2333322 57899998
Q ss_pred EcCCcccccchhhhhhhHHhHHHHHHHH----------hccccEEEecCCChhhhhc-CCCCCCEEEeCCCCCCcccccc
Q 001292 323 IQEDSLANRLPVYVERGFQNLLSYWKSV----------FSRVNVIVFPDYTLPMLYS-VLDAGNFFVIPGSPADVWAVEA 391 (1106)
Q Consensus 323 IHna~Ls~r~~~Y~~~gleklis~~~~~----------l~~AD~VIa~S~~~~~~~~-gi~~~KI~VIpN~GVDl~~~e~ 391 (1106)
.|+....... ...+.+.+..+... ...+|.+++.+........ .+......+.+. +.+.
T Consensus 158 ~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----- 227 (412)
T 3otg_A 158 GVGRDTPDDL----TRSIEEEVRGLAQRLGLDLPPGRIDGFGNPFIDIFPPSLQEPEFRARPRRHELRPV-PFAE----- 227 (412)
T ss_dssp CCSCCCCSHH----HHHHHHHHHHHHHHTTCCCCSSCCGGGGCCEEECSCGGGSCHHHHTCTTEEECCCC-CCCC-----
T ss_pred cccccCchhh----hHHHHHHHHHHHHHcCCCCCcccccCCCCeEEeeCCHHhcCCcccCCCCcceeecc-CCCC-----
Confidence 7774321111 11112222222221 2356667776654332211 111111111111 1110
Q ss_pred cCcchhHHHHHHHc--C-CCCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccH
Q 001292 392 YSKSHEKYQLRKEN--G-FLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYN 468 (1106)
Q Consensus 392 F~ps~s~~~LR~~l--G-L~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~ 468 (1106)
.. . +..+ . .+++..+++++|++. .++...+..+++.+.+ .++++++++|.++..
T Consensus 228 ---~~---~-~~~~~~~~~~~~~~vlv~~G~~~-----~~~~~~~~~~~~~l~~---------~~~~~~~~~g~~~~~-- 284 (412)
T 3otg_A 228 ---QG---D-LPAWLSSRDTARPLVYLTLGTSS-----GGTVEVLRAAIDGLAG---------LDADVLVASGPSLDV-- 284 (412)
T ss_dssp ---CC---C-CCGGGGGSCTTSCEEEEECTTTT-----CSCHHHHHHHHHHHHT---------SSSEEEEECCSSCCC--
T ss_pred ---CC---C-CCCccccccCCCCEEEEEcCCCC-----cCcHHHHHHHHHHHHc---------CCCEEEEEECCCCCh--
Confidence 00 0 1122 1 233455667777653 3455555555544321 234666667766533
Q ss_pred HHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCC----CchhhhccC
Q 001292 469 DALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYVAEG 544 (1106)
Q Consensus 469 eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~g----GI~EiV~Dg 544 (1106)
+.++ .+.+ +|.+.|+. ++..+|+.||++|.+| ++.+++|||++|+|+|+...+ ++.+.+.+.
T Consensus 285 ~~l~------~~~~-~v~~~~~~-~~~~~l~~ad~~v~~~------g~~t~~Ea~a~G~P~v~~p~~~~q~~~~~~v~~~ 350 (412)
T 3otg_A 285 SGLG------EVPA-NVRLESWV-PQAALLPHVDLVVHHG------GSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQA 350 (412)
T ss_dssp TTCC------CCCT-TEEEESCC-CHHHHGGGCSEEEESC------CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHH
T ss_pred hhhc------cCCC-cEEEeCCC-CHHHHHhcCcEEEECC------chHHHHHHHHhCCCEEecCCchhHHHHHHHHHHc
Confidence 2222 3455 89999998 8999999999999663 458999999999999996554 477888888
Q ss_pred CeEEEEcCC--CHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Q 001292 545 AQVIFFQKD--NPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILE 603 (1106)
Q Consensus 545 ~nG~LV~~~--D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLye 603 (1106)
.+|++++++ |+++|+++|.++++|+++ +++|++.+++......+...++.+++++.
T Consensus 351 g~g~~~~~~~~~~~~l~~ai~~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 408 (412)
T 3otg_A 351 GAGDHLLPDNISPDSVSGAAKRLLAEESY---RAGARAVAAEIAAMPGPDEVVRLLPGFAS 408 (412)
T ss_dssp TSEEECCGGGCCHHHHHHHHHHHHHCHHH---HHHHHHHHHHHHHSCCHHHHHTTHHHHHC
T ss_pred CCEEecCcccCCHHHHHHHHHHHHhCHHH---HHHHHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 899999876 899999999999999987 68899999999888777777777777664
No 32
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.69 E-value=5.9e-15 Score=167.06 Aligned_cols=313 Identities=12% Similarity=0.090 Sum_probs=193.8
Q ss_pred CCCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCch----------------------------HHHH--
Q 001292 221 RPPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSH----------------------------SLWE-- 270 (1106)
Q Consensus 221 r~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~----------------------------~i~r-- 270 (1106)
|++||++..| +.+|-....+.++++|+++|++|.+++...+.-. ..++
T Consensus 1 M~~~i~i~~G--GTgGHi~palala~~L~~~g~~V~~vg~~~g~e~~~v~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~ 78 (365)
T 3s2u_A 1 MKGNVLIMAG--GTGGHVFPALACAREFQARGYAVHWLGTPRGIENDLVPKAGLPLHLIQVSGLRGKGLKSLVKAPLELL 78 (365)
T ss_dssp --CEEEEECC--SSHHHHHHHHHHHHHHHHTTCEEEEEECSSSTHHHHTGGGTCCEEECC--------------CHHHHH
T ss_pred CCCcEEEEcC--CCHHHHHHHHHHHHHHHhCCCEEEEEECCchHhhchhhhcCCcEEEEECCCcCCCCHHHHHHHHHHHH
Confidence 4678887755 2446566788999999999999999875443100 0111
Q ss_pred -HHhHHHHHhhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHH
Q 001292 271 -QIAGQISILGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKS 349 (1106)
Q Consensus 271 -~lg~lvkiIr~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~ 349 (1106)
.+....++++..+||+|........+...++.+. .++|+|++-+|.... .. .++
T Consensus 79 ~~~~~~~~~l~~~~PDvVi~~g~~~s~p~~laA~~----------~~iP~vihe~n~~~G------~~---nr~------ 133 (365)
T 3s2u_A 79 KSLFQALRVIRQLRPVCVLGLGGYVTGPGGLAARL----------NGVPLVIHEQNAVAG------TA---NRS------ 133 (365)
T ss_dssp HHHHHHHHHHHHHCCSEEEECSSSTHHHHHHHHHH----------TTCCEEEEECSSSCC------HH---HHH------
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcchHHHHHHHHH----------cCCCEEEEecchhhh------hH---HHh------
Confidence 1112456788899999988655555555555543 689999664443110 00 111
Q ss_pred HhccccEEEecCCChhhhhcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEc-ccCccccccC
Q 001292 350 VFSRVNVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVG-SSFFYNELSW 428 (1106)
Q Consensus 350 ~l~~AD~VIa~S~~~~~~~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VG-Rl~~y~kg~K 428 (1106)
..+.++.|+...... .....++.++++ ++.. +.+... +...++.+++++++.+| ++.. .+
T Consensus 134 l~~~a~~v~~~~~~~-----~~~~~k~~~~g~-pvr~---~~~~~~------~~~~~~~~~~~~ilv~gGs~g~----~~ 194 (365)
T 3s2u_A 134 LAPIARRVCEAFPDT-----FPASDKRLTTGN-PVRG---ELFLDA------HARAPLTGRRVNLLVLGGSLGA----EP 194 (365)
T ss_dssp HGGGCSEEEESSTTS-----SCC---CEECCC-CCCG---GGCCCT------TSSCCCTTSCCEEEECCTTTTC----SH
T ss_pred hccccceeeeccccc-----ccCcCcEEEECC-CCch---hhccch------hhhcccCCCCcEEEEECCcCCc----cc
Confidence 124566666543321 123345666665 5654 222221 22445666666666664 3332 23
Q ss_pred CHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEcc
Q 001292 429 DYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGS 508 (1106)
Q Consensus 429 g~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS 508 (1106)
..+.+++++..+. . ..++.+++++|.+. .+.+.+..++.+. ++.+.++.+++.++|+.||++|.-
T Consensus 195 ~~~~~~~al~~l~-------~-~~~~~vi~~~G~~~---~~~~~~~~~~~~~---~~~v~~f~~dm~~~l~~aDlvI~r- 259 (365)
T 3s2u_A 195 LNKLLPEALAQVP-------L-EIRPAIRHQAGRQH---AEITAERYRTVAV---EADVAPFISDMAAAYAWADLVICR- 259 (365)
T ss_dssp HHHHHHHHHHTSC-------T-TTCCEEEEECCTTT---HHHHHHHHHHTTC---CCEEESCCSCHHHHHHHCSEEEEC-
T ss_pred cchhhHHHHHhcc-------c-ccceEEEEecCccc---cccccceeccccc---ccccccchhhhhhhhccceEEEec-
Confidence 3455566664432 1 13445455566553 4666666666654 577889999999999999999953
Q ss_pred CCCCCCCcHHHHHHHHhCCCEEecCCCCc--------hhhhccCCeEEEEcCC--CHHHHHHHHHHHHhCcccHHHHHHH
Q 001292 509 SQVEQGFPSLIVRAMTFGIPVITPDFPII--------KEYVAEGAQVIFFQKD--NPEGLSRAFSLFISNGKLSKFARTV 578 (1106)
Q Consensus 509 ~~EeEGFGlvLLEAMA~G~PVIASD~gGI--------~EiV~Dg~nG~LV~~~--D~eeLAeAI~~LLsDpelRk~r~~m 578 (1106)
+++.++.|+|++|+|+|..+.+.. .+.+.+...|.+++.. ++++|+++|.++++||+. +++|
T Consensus 260 -----aG~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll~d~~~---~~~m 331 (365)
T 3s2u_A 260 -----AGALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSEVLMHPET---LRSM 331 (365)
T ss_dssp -----CCHHHHHHHHHHTCCEEECC-----CCHHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCTHH---HHHH
T ss_pred -----CCcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHHHCCCEEEeecCCCCHHHHHHHHHHHHCCHHH---HHHH
Confidence 347999999999999998766532 3456666688888654 589999999999999997 6899
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHH
Q 001292 579 ASAGRLHAKNMLALDCVTRYARIL 602 (1106)
Q Consensus 579 Ge~Are~ake~fsee~v~~Y~eLy 602 (1106)
++++++....+-.++.++..+++.
T Consensus 332 ~~~a~~~~~~~aa~~ia~~i~~la 355 (365)
T 3s2u_A 332 ADQARSLAKPEATRTVVDACLEVA 355 (365)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHHC
T ss_pred HHHHHhcCCccHHHHHHHHHHHHH
Confidence 999998776554444444444443
No 33
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.66 E-value=1.1e-14 Score=164.36 Aligned_cols=288 Identities=11% Similarity=-0.035 Sum_probs=185.1
Q ss_pred eCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCC---CchHHHHHHhHHHHHhh-ccCccEEEEcccc--HH-HHHHHH
Q 001292 229 LGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSG---NSHSLWEQIAGQISILG-QEQYSLIDWSIFD--GI-IADSLE 301 (1106)
Q Consensus 229 lg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg---~~~~i~r~lg~lvkiIr-~~~pDiIh~~~~~--~i-~v~~La 301 (1106)
.+.-..++...+-.+..+.+++.|++-..+...+. ......+.+. .++. ..+.|+|.+..+. .. +...+.
T Consensus 19 ~~~~~~~a~~ka~~dv~~i~~~~G~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~DvIi~q~P~~~~~~~~~~~~ 95 (339)
T 3rhz_A 19 NGQSIQSTAQLCQNTVTDVAVSLGYRELGIYCYQIHTDSESELSKRLD---GIVAGLRHGDVVIFQTPTWNTTEFDEKLM 95 (339)
T ss_dssp ESSCTTCHHHHHHHHHHHHHHHTTCEEEEEECCCGGGSCHHHHHHHHH---HHTTTCCTTCEEEEEECCSSCHHHHHHHH
T ss_pred cCccccchHHHHHHHHHHHHHHCCCeEEEeeccccccccHHHHHHHHH---HHHhcCCCCCEEEEeCCCcchhhHHHHHH
Confidence 33334467788888899999999998655543321 1222222222 2222 3567777664433 22 333344
Q ss_pred HHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhccccEEEecCCChhhh--hcCCCCCCEEEe
Q 001292 302 AKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPML--YSVLDAGNFFVI 379 (1106)
Q Consensus 302 ~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~~~~~~--~~gi~~~KI~VI 379 (1106)
.+.. ..++|+|+.+|+.... +... . ..........++.+|.|+++|....+. ..+++..++.++
T Consensus 96 ~~lk--------~~~~k~i~~ihDl~pl-~~~~--~---~~~~~~E~~~y~~aD~Ii~~S~~~~~~l~~~G~~~~ki~~~ 161 (339)
T 3rhz_A 96 NKLK--------LYDIKIVLFIHDVVPL-MFSG--N---FYLMDRTIAYYNKADVVVAPSQKMIDKLRDFGMNVSKTVVQ 161 (339)
T ss_dssp HHHT--------TSSCEEEEEESCCHHH-HCGG--G---GGGHHHHHHHHTTCSEEEESCHHHHHHHHHTTCCCSEEEEC
T ss_pred HHHH--------hcCCEEEEEecccHHh-hCcc--c---hhhHHHHHHHHHHCCEEEECCHHHHHHHHHcCCCcCceeec
Confidence 4332 2589999999995211 0000 0 111112345689999999999776655 457766677665
Q ss_pred CCCCCCcccccccCcchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEE
Q 001292 380 PGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFL 459 (1106)
Q Consensus 380 pN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLII 459 (1106)
++ +|.. ... + ...+.+.++|+|+|++.. .+.+..+ .++++ |+|
T Consensus 162 ~~--~~~~--~~~-~----------~~~~~~~~~i~yaG~l~k-----------~~~L~~l----------~~~~~-f~i 204 (339)
T 3rhz_A 162 GM--WDHP--TQA-P----------MFPAGLKREIHFPGNPER-----------FSFVKEW----------KYDIP-LKV 204 (339)
T ss_dssp CS--CCCC--CCC-C----------CCCCEEEEEEEECSCTTT-----------CGGGGGC----------CCSSC-EEE
T ss_pred CC--CCcc--Ccc-c----------ccccCCCcEEEEeCCcch-----------hhHHHhC----------CCCCe-EEE
Confidence 54 2320 011 0 112345689999998753 0111111 26787 688
Q ss_pred EcCCCCccHHHHHHHHHHcCCCCCcEEEcC--ChhhHHHHHHHcCeEEEccCC-C----CCCCcHHHHHHHHhCCCEEec
Q 001292 460 CGNSTDGYNDALQEVASRLGLLEHSVRHYG--FNGDVNGVLLMADIVLYGSSQ-V----EQGFPSLIVRAMTFGIPVITP 532 (1106)
Q Consensus 460 VG~GperY~eeLkeLaeklGL~d~rV~flG--~~eDL~~LyaaADVfV~PS~~-E----eEGFGlvLLEAMA~G~PVIAS 532 (1106)
+|+|++. .++ +|+|+| +.+++..+|+.+|+.++.... . ....|++++|+||+|+|||++
T Consensus 205 vG~G~~~------------~l~--nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~ 270 (339)
T 3rhz_A 205 YTWQNVE------------LPQ--NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQ 270 (339)
T ss_dssp EESCCCC------------CCT--TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEE
T ss_pred EeCCccc------------CcC--CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEc
Confidence 9999964 243 799999 458899999989988876110 0 014699999999999999999
Q ss_pred CCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcH
Q 001292 533 DFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLA 591 (1106)
Q Consensus 533 D~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fs 591 (1106)
+.+++.++|.++.+|++++ +.++++++|..+. ++. +++|++++++.+++..+
T Consensus 271 ~~~~~~~~v~~~~~G~~~~--~~~e~~~~i~~l~--~~~---~~~m~~na~~~a~~~~~ 322 (339)
T 3rhz_A 271 EGIANQELIENNGLGWIVK--DVEEAIMKVKNVN--EDE---YIELVKNVRSFNPILRK 322 (339)
T ss_dssp TTCTTTHHHHHHTCEEEES--SHHHHHHHHHHCC--HHH---HHHHHHHHHHHTHHHHT
T ss_pred cChhHHHHHHhCCeEEEeC--CHHHHHHHHHHhC--HHH---HHHHHHHHHHHHHHhhc
Confidence 9999999999999999986 6899999999874 222 58899999888665443
No 34
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.65 E-value=1.2e-14 Score=165.49 Aligned_cols=321 Identities=12% Similarity=0.045 Sum_probs=186.7
Q ss_pred CEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCC----------------C----c----------hHHH---
Q 001292 223 PRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSG----------------N----S----------HSLW--- 269 (1106)
Q Consensus 223 ~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg----------------~----~----------~~i~--- 269 (1106)
++|+++.. ...|....++.++++|+++||+|++++.... . . ...+
T Consensus 8 ~kIl~~~~--~~~Gh~~p~~~la~~L~~~G~~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (430)
T 2iyf_A 8 AHIAMFSI--AAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAATGPRPVLYHSTLPGPDADPEAWGSTLLDNVEPF 85 (430)
T ss_dssp CEEEEECC--SCHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHTTSCEEEECCCCSCCTTSCGGGGCSSHHHHHHHH
T ss_pred ceEEEEeC--CCCccccchHHHHHHHHHCCCeEEEEeCHHHHHHHHhCCCEEEEcCCcCccccccccccchhhHHHHHHH
Confidence 58988743 4466677789999999999999999985321 0 0 0001
Q ss_pred -----HHHhHHHHHhhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhh-------
Q 001292 270 -----EQIAGQISILGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVE------- 337 (1106)
Q Consensus 270 -----r~lg~lvkiIr~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~------- 337 (1106)
.....+.++++..++|+|+...+.. ...+..+. .++|+|+..+.............
T Consensus 86 ~~~~~~~~~~l~~~l~~~~pD~Vi~d~~~~--~~~~~A~~----------~giP~v~~~~~~~~~~~~~~~~~~~~~~~~ 153 (430)
T 2iyf_A 86 LNDAIQALPQLADAYADDIPDLVLHDITSY--PARVLARR----------WGVPAVSLSPNLVAWKGYEEEVAEPMWREP 153 (430)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSEEEEETTCH--HHHHHHHH----------HTCCEEEEESSCCCCTTHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEECCccH--HHHHHHHH----------cCCCEEEEecccccccccccccccchhhhh
Confidence 1122256677778999998765432 22222221 47899988766421111000000
Q ss_pred ---hhHH---hHHHHHHH----------HhccccEEEecCCChhhhh-cCCCCCCEEEeCCCCCCcccccccCcchhHHH
Q 001292 338 ---RGFQ---NLLSYWKS----------VFSRVNVIVFPDYTLPMLY-SVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQ 400 (1106)
Q Consensus 338 ---~gle---klis~~~~----------~l~~AD~VIa~S~~~~~~~-~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~ 400 (1106)
.+.. ..+..+.. .+..++.+++.+....... ..++..++.++++ +++. ...
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~vG~-~~~~---~~~-------- 221 (430)
T 2iyf_A 154 RQTERGRAYYARFEAWLKENGITEHPDTFASHPPRSLVLIPKALQPHADRVDEDVYTFVGA-CQGD---RAE-------- 221 (430)
T ss_dssp HHSHHHHHHHHHHHHHHHHTTCCSCHHHHHHCCSSEEECSCGGGSTTGGGSCTTTEEECCC-CC----------------
T ss_pred ccchHHHHHHHHHHHHHHHhCCCCCHHHHhcCCCcEEEeCcHHhCCCcccCCCccEEEeCC-cCCC---CCC--------
Confidence 0110 01111111 1124666776654432221 2333322777764 2332 000
Q ss_pred HHHHcC--CCCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHc
Q 001292 401 LRKENG--FLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRL 478 (1106)
Q Consensus 401 LR~~lG--L~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaekl 478 (1106)
...+. .+++.++++++|++.. +..+....++++++ .. +++++++++|.++.. +.++
T Consensus 222 -~~~~~~~~~~~~~v~v~~Gs~~~--~~~~~~~~~~~~l~-------~~----~~~~~~~~~G~~~~~--~~l~------ 279 (430)
T 2iyf_A 222 -EGGWQRPAGAEKVVLVSLGSAFT--KQPAFYRECVRAFG-------NL----PGWHLVLQIGRKVTP--AELG------ 279 (430)
T ss_dssp -CCCCCCCTTCSEEEEEECTTTCC---CHHHHHHHHHHHT-------TC----TTEEEEEECC---CG--GGGC------
T ss_pred -CCCCccccCCCCeEEEEcCCCCC--CcHHHHHHHHHHHh-------cC----CCeEEEEEeCCCCCh--HHhc------
Confidence 00122 1234567888887651 22222233333331 11 456766788987754 3331
Q ss_pred CCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCC----chhhhccCCeEEEEcCC-
Q 001292 479 GLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPI----IKEYVAEGAQVIFFQKD- 553 (1106)
Q Consensus 479 GL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gG----I~EiV~Dg~nG~LV~~~- 553 (1106)
.+++ +|.+.|+..+. .+|+.||++|..+ .+++++|||++|+|+|+.+.++ +.+.+.+...|++++.+
T Consensus 280 ~~~~-~v~~~~~~~~~-~~l~~ad~~v~~~------G~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~~g~g~~~~~~~ 351 (430)
T 2iyf_A 280 ELPD-NVEVHDWVPQL-AILRQADLFVTHA------GAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEE 351 (430)
T ss_dssp SCCT-TEEEESSCCHH-HHHTTCSEEEECC------CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCCC-
T ss_pred cCCC-CeEEEecCCHH-HHhhccCEEEECC------CccHHHHHHHhCCCEEECCCccchHHHHHHHHHcCCEEEcCCCC
Confidence 2455 89999988777 8999999998753 3589999999999999997754 46667777789998876
Q ss_pred -CHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 001292 554 -NPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARIL 602 (1106)
Q Consensus 554 -D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLy 602 (1106)
|+++|+++|.++++|+++ ++++++.+++......+.+.++.+++++
T Consensus 352 ~~~~~l~~~i~~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 398 (430)
T 2iyf_A 352 ATADLLRETALALVDDPEV---ARRLRRIQAEMAQEGGTRRAADLIEAEL 398 (430)
T ss_dssp CCHHHHHHHHHHHHHCHHH---HHHHHHHHHHHHHHCHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHcCHHH---HHHHHHHHHHHHhcCcHHHHHHHHHHHh
Confidence 899999999999999987 5778888887776554444444554444
No 35
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.62 E-value=4.8e-15 Score=167.32 Aligned_cols=318 Identities=11% Similarity=0.027 Sum_probs=174.3
Q ss_pred CCCCCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCC------------ch--------------------
Q 001292 219 GVRPPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGN------------SH-------------------- 266 (1106)
Q Consensus 219 g~r~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~------------~~-------------------- 266 (1106)
....+||+++... ..|....+.+++++|+++||+|+|++..... ..
T Consensus 12 ~~~~MrIl~~~~~--~~gh~~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (398)
T 4fzr_A 12 RGSHMRILVIAGC--SEGFVMPLVPLSWALRAAGHEVLVAASENMGPTVTGAGLPFAPTCPSLDMPEVLSWDREGNRTTM 89 (398)
T ss_dssp ---CCEEEEECCS--SHHHHGGGHHHHHHHHHTTCEEEEEEEGGGHHHHHHTTCCEEEEESSCCHHHHHSBCTTSCBCCC
T ss_pred CCCceEEEEEcCC--CcchHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhCCCeeEecCCccchHhhhhhhccCccccc
Confidence 4556899998754 4566667889999999999999999863210 00
Q ss_pred ---------HH---H-----HHHhHHHHHhhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCccc
Q 001292 267 ---------SL---W-----EQIAGQISILGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLA 329 (1106)
Q Consensus 267 ---------~i---~-----r~lg~lvkiIr~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls 329 (1106)
.. + ..+..+..+++..+||+|+..... +...+..+. .++|+|.+.|+....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVv~d~~~--~~~~~~a~~----------~giP~v~~~~~~~~~ 157 (398)
T 4fzr_A 90 PREEKPLLEHIGRGYGRLVLRMRDEALALAERWKPDLVLTETYS--LTGPLVAAT----------LGIPWIEQSIRLASP 157 (398)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTC--THHHHHHHH----------HTCCEEEECCSSCCC
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECccc--cHHHHHHHh----------hCCCEEEeccCCCCc
Confidence 00 0 011125667777899999875422 223333322 478999887774322
Q ss_pred ccchhhhhhhHHhHHHHHHHHh-----ccccEEEecCCChhhhhcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHH
Q 001292 330 NRLPVYVERGFQNLLSYWKSVF-----SRVNVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKE 404 (1106)
Q Consensus 330 ~r~~~Y~~~gleklis~~~~~l-----~~AD~VIa~S~~~~~~~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~ 404 (1106)
..... ...+.+..+...+ ...+..+.................+..++... . .......+.
T Consensus 158 ~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~-- 222 (398)
T 4fzr_A 158 ELIKS----AGVGELAPELAELGLTDFPDPLLSIDVCPPSMEAQPKPGTTKMRYVPYNG-R--------NDQVPSWVF-- 222 (398)
T ss_dssp HHHHH----HHHHHTHHHHHTTTCSSCCCCSEEEECSCGGGC----CCCEECCCCCCCC-S--------SCCCCHHHH--
T ss_pred hhhhH----HHHHHHHHHHHHcCCCCCCCCCeEEEeCChhhCCCCCCCCCCeeeeCCCC-C--------CCCCchhhh--
Confidence 11110 1111111111111 11233343332221111000000011111100 0 000011111
Q ss_pred cCCCCCcEEEEEEcccCcccc------ccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHc
Q 001292 405 NGFLKDEIVVVVVGSSFFYNE------LSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRL 478 (1106)
Q Consensus 405 lGL~~d~~VIL~VGRl~~y~k------g~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaekl 478 (1106)
..+++..+++++|++...+. +.+....+++++..+ +++ +++++.+... +.+.
T Consensus 223 -~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~------------~~~-~v~~~~~~~~--~~l~------ 280 (398)
T 4fzr_A 223 -EERKQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKL------------GFE-VVVAVSDKLA--QTLQ------ 280 (398)
T ss_dssp -SCCSSCEEECC----------------CCSHHHHHHHGGGG------------TCE-EEECCCC---------------
T ss_pred -cCCCCCEEEEEccCcccccccccccchHHHHHHHHHHHHhC------------CCE-EEEEeCCcch--hhhc------
Confidence 11345667788888764221 344566666666322 345 3555554432 3332
Q ss_pred CCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEe----cCCCCchhhhccCCeEEEEcCC-
Q 001292 479 GLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVIT----PDFPIIKEYVAEGAQVIFFQKD- 553 (1106)
Q Consensus 479 GL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIA----SD~gGI~EiV~Dg~nG~LV~~~- 553 (1106)
.+.+ +|.+.|+. ++..+|..||++|.. +++.+++|||++|+|+|+ ++..++.+.+.+...|++++..
T Consensus 281 ~~~~-~v~~~~~~-~~~~ll~~ad~~v~~------gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~ 352 (398)
T 4fzr_A 281 PLPE-GVLAAGQF-PLSAIMPACDVVVHH------GGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQ 352 (398)
T ss_dssp -CCT-TEEEESCC-CHHHHGGGCSEEEEC------CCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHTTSEEECC---
T ss_pred cCCC-cEEEeCcC-CHHHHHhhCCEEEec------CCHHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCccc
Confidence 3455 89999987 689999999999953 557899999999999999 5555778888888899998876
Q ss_pred -CHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHH
Q 001292 554 -NPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRY 598 (1106)
Q Consensus 554 -D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y 598 (1106)
|+++|+++|.++++|++. +++|++.+++......+.+.++.+
T Consensus 353 ~~~~~l~~ai~~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l 395 (398)
T 4fzr_A 353 AGVESVLAACARIRDDSSY---VGNARRLAAEMATLPTPADIVRLI 395 (398)
T ss_dssp ----CHHHHHHHHHHCTHH---HHHHHHHHHHHTTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCHHH---HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 789999999999999988 578888888887777776666544
No 36
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.61 E-value=8.3e-15 Score=164.51 Aligned_cols=318 Identities=13% Similarity=0.064 Sum_probs=185.9
Q ss_pred CCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCC----------------CCc--------------------
Q 001292 222 PPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRS----------------GNS-------------------- 265 (1106)
Q Consensus 222 ~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~d----------------g~~-------------------- 265 (1106)
++||+++... ..|....+.+++++|+++||+|++++... +..
T Consensus 1 ~MrIl~~~~~--~~gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (391)
T 3tsa_A 1 HMRVLVVPLP--YPTHLMAMVPLCWALQASGHEVLIAAPPELQATAHGAGLTTAGIRGNDRTGDTGGTTQLRFPNPAFGQ 78 (391)
T ss_dssp CCEEEEECCS--CHHHHHTTHHHHHHHHHTTCEEEEEECHHHHHHHHHBTCEEEEC--------------CCSCCGGGGC
T ss_pred CcEEEEEcCC--CcchhhhHHHHHHHHHHCCCEEEEecChhhHHHHHhCCCceeeecCCccchhhhhhhccccccccccc
Confidence 4789998865 56667778899999999999999998521 000
Q ss_pred ---hH---HHH-----H-------HhHHHHHhhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCc
Q 001292 266 ---HS---LWE-----Q-------IAGQISILGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDS 327 (1106)
Q Consensus 266 ---~~---i~r-----~-------lg~lvkiIr~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~ 327 (1106)
.. .+. . +..+.++++..+||+|+...+. +...+..+. .++|+|...|+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~PD~Vv~~~~~--~~~~~aa~~----------~giP~v~~~~~~~ 146 (391)
T 3tsa_A 79 RDTEAGRQLWEQTASNVAQSSLDQLPEYLRLAEAWRPSVLLVDVCA--LIGRVLGGL----------LDLPVVLHRWGVD 146 (391)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTC--HHHHHHHHH----------TTCCEEEECCSCC
T ss_pred ccchhHHHHHHHHHHHHhhcchhhHHHHHHHHHhcCCCEEEeCcch--hHHHHHHHH----------hCCCEEEEecCCc
Confidence 00 000 0 2335677788899998886422 333333332 6899998877753
Q ss_pred ccccchhhhhhhHHhHHHHHHHHhc-----cccEEEecCCChhhhhcCCCCCCEEEeCCCCCCcccccccCcchhHHHHH
Q 001292 328 LANRLPVYVERGFQNLLSYWKSVFS-----RVNVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLR 402 (1106)
Q Consensus 328 Ls~r~~~Y~~~gleklis~~~~~l~-----~AD~VIa~S~~~~~~~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR 402 (1106)
......... ...++..+...+. ..+.++.................+..+|..+ . ... .
T Consensus 147 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~---~~~---------~ 209 (391)
T 3tsa_A 147 PTAGPFSDR---AHELLDPVCRHHGLTGLPTPELILDPCPPSLQASDAPQGAPVQYVPYNG--S---GAF---------P 209 (391)
T ss_dssp CTTTHHHHH---HHHHHHHHHHHTTSSSSCCCSEEEECSCGGGSCTTSCCCEECCCCCCCC--C---EEC---------C
T ss_pred cccccccch---HHHHHHHHHHHcCCCCCCCCceEEEecChhhcCCCCCccCCeeeecCCC--C---cCC---------C
Confidence 222111111 1222222222221 1255555443322221110110111111100 0 000 0
Q ss_pred HHcC-CCCCcEEEEEEcccCccccccCCH-HHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCC
Q 001292 403 KENG-FLKDEIVVVVVGSSFFYNELSWDY-AVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGL 480 (1106)
Q Consensus 403 ~~lG-L~~d~~VIL~VGRl~~y~kg~Kg~-dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL 480 (1106)
..+. .+++..+++.+|++.. .++. ..+++++... . ..|++++ ++++.++.. +.+. ++
T Consensus 210 ~~~~~~~~~~~vlv~~G~~~~----~~~~~~~~~~~~~~~-~-------~~p~~~~-v~~~~~~~~--~~l~------~~ 268 (391)
T 3tsa_A 210 AWGAARTSARRVCICMGRMVL----NATGPAPLLRAVAAA-T-------ELPGVEA-VIAVPPEHR--ALLT------DL 268 (391)
T ss_dssp GGGSSCCSSEEEEEECCHHHH----HHHCSHHHHHHHHHH-H-------TSTTEEE-EEECCGGGG--GGCT------TC
T ss_pred chhhcCCCCCEEEEEcCCCCC----cccchHHHHHHHHHh-c-------cCCCeEE-EEEECCcch--hhcc------cC
Confidence 1111 1234456666676533 2222 4445554332 2 1267874 555554432 2221 34
Q ss_pred CCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec----CCCCchhhhccCCeEEEEcC----
Q 001292 481 LEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP----DFPIIKEYVAEGAQVIFFQK---- 552 (1106)
Q Consensus 481 ~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS----D~gGI~EiV~Dg~nG~LV~~---- 552 (1106)
.+ +|++.|+. +...++..||++|.. +++.+++|||++|+|+|+. +..++.+.+.+...|.++++
T Consensus 269 ~~-~v~~~~~~-~~~~ll~~ad~~v~~------~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~ 340 (391)
T 3tsa_A 269 PD-NARIAESV-PLNLFLRTCELVICA------GGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQ 340 (391)
T ss_dssp CT-TEEECCSC-CGGGTGGGCSEEEEC------CCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTTSEEECCSHHHH
T ss_pred CC-CEEEeccC-CHHHHHhhCCEEEeC------CCHHHHHHHHHhCCCEEecCCcccHHHHHHHHHHcCCEEecCccccc
Confidence 55 89999976 345677999999954 5568999999999999994 55567788888889999987
Q ss_pred CCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 001292 553 DNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARIL 602 (1106)
Q Consensus 553 ~D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLy 602 (1106)
.|+++|+++|.++++|++. +++|++.+++......+.+.++.+++++
T Consensus 341 ~~~~~l~~ai~~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 387 (391)
T 3tsa_A 341 SDHEQFTDSIATVLGDTGF---AAAAIKLSDEITAMPHPAALVRTLENTA 387 (391)
T ss_dssp TCHHHHHHHHHHHHTCTHH---HHHHHHHHHHHHTSCCHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHcCHHH---HHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6899999999999999987 5778888888877777766666655544
No 37
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.58 E-value=2.2e-13 Score=152.54 Aligned_cols=321 Identities=13% Similarity=0.108 Sum_probs=186.5
Q ss_pred CEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCC--------CC------c-------------hH--------
Q 001292 223 PRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRS--------GN------S-------------HS-------- 267 (1106)
Q Consensus 223 ~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~d--------g~------~-------------~~-------- 267 (1106)
+||+++... ..|....+++|+++|+++||+|++++... |- . ..
T Consensus 5 ~~il~~~~~--~~Ghv~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (402)
T 3ia7_A 5 RHILFANVQ--GHGHVYPSLGLVSELARRGHRITYVTTPLFADEVKAAGAEVVLYKSEFDTFHVPEVVKQEDAETQLHLV 82 (402)
T ss_dssp CEEEEECCS--SHHHHHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHTTCEEEECCCGGGTSSSSSSSCCTTHHHHHHHH
T ss_pred CEEEEEeCC--CCcccccHHHHHHHHHhCCCEEEEEcCHHHHHHHHHcCCEEEecccccccccccccccccchHHHHHHH
Confidence 388887653 45777888999999999999999998521 00 0 00
Q ss_pred HHH----HHhHHHHHhhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhh--------
Q 001292 268 LWE----QIAGQISILGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVY-------- 335 (1106)
Q Consensus 268 i~r----~lg~lvkiIr~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y-------- 335 (1106)
..+ .+..+...++..+||+|+..++.... ..+..+. .++|+|...|...........
T Consensus 83 ~~~~~~~~~~~l~~~l~~~~pD~Vi~d~~~~~~-~~~aA~~----------~giP~v~~~~~~~~~~~~~~~~~~~~~~~ 151 (402)
T 3ia7_A 83 YVRENVAILRAAEEALGDNPPDLVVYDVFPFIA-GRLLAAR----------WDRPAVRLTGGFAANEHYSLFKELWKSNG 151 (402)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSEEEEESTTHHH-HHHHHHH----------HTCCEEEEESSCCCBTTBCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEECchHHHH-HHHHHHh----------hCCCEEEEecccccCcccccccccccccc
Confidence 111 12235677778899999886333333 3333322 579999887663221110000
Q ss_pred ---h--hhhHHhHHHHHHHHh----------ccc-cEEEecCCChhhhhcCCCCCCEEEeCCCCCCcccccccCcchhHH
Q 001292 336 ---V--ERGFQNLLSYWKSVF----------SRV-NVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKY 399 (1106)
Q Consensus 336 ---~--~~gleklis~~~~~l----------~~A-D~VIa~S~~~~~~~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~ 399 (1106)
+ .......+..+...+ ... +..++...............++.+++.. +.. ..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vGp~-~~~---~~-------- 219 (402)
T 3ia7_A 152 QRHPADVEAVHSVLVDLLGKYGVDTPVKEYWDEIEGLTIVFLPKSFQPFAETFDERFAFVGPT-LTG---RD-------- 219 (402)
T ss_dssp CCCGGGSHHHHHHHHHHHHTTTCCSCHHHHHTCCCSCEEESSCGGGSTTGGGCCTTEEECCCC-CCC-------------
T ss_pred ccChhhHHHHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcChHhCCccccCCCCeEEeCCC-CCC---cc--------
Confidence 0 000011111111111 111 4444444332222211113346666431 211 00
Q ss_pred HHHHHcC--CCCCcEEEEEEcccCccccccC--CHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHH
Q 001292 400 QLRKENG--FLKDEIVVVVVGSSFFYNELSW--DYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVA 475 (1106)
Q Consensus 400 ~LR~~lG--L~~d~~VIL~VGRl~~y~kg~K--g~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLa 475 (1106)
. ...+. .++...++++.|+... .+ ....+++++ .. .++++++++|.+... +.++
T Consensus 220 ~-~~~~~~~~~~~~~v~v~~G~~~~----~~~~~~~~~~~~~-------~~-----~~~~~~~~~g~~~~~--~~~~--- 277 (402)
T 3ia7_A 220 G-QPGWQPPRPDAPVLLVSLGNQFN----EHPEFFRACAQAF-------AD-----TPWHVVMAIGGFLDP--AVLG--- 277 (402)
T ss_dssp ---CCCCCSSTTCCEEEEECCSCSS----CCHHHHHHHHHHH-------TT-----SSCEEEEECCTTSCG--GGGC---
T ss_pred c-CCCCcccCCCCCEEEEECCCCCc----chHHHHHHHHHHH-------hc-----CCcEEEEEeCCcCCh--hhhC---
Confidence 0 00111 2334567778887643 22 122223322 11 125666778876543 2222
Q ss_pred HHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEe-----cCCCCchhhhccCCeEEEE
Q 001292 476 SRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVIT-----PDFPIIKEYVAEGAQVIFF 550 (1106)
Q Consensus 476 eklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIA-----SD~gGI~EiV~Dg~nG~LV 550 (1106)
.+.+ +|.+.|+..+. .+|+.||++|..| ...+++|||++|+|+|+ .+..++.+.+.+...|.++
T Consensus 278 ---~~~~-~v~~~~~~~~~-~ll~~ad~~v~~~------G~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~ 346 (402)
T 3ia7_A 278 ---PLPP-NVEAHQWIPFH-SVLAHARACLTHG------TTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVL 346 (402)
T ss_dssp ---SCCT-TEEEESCCCHH-HHHTTEEEEEECC------CHHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEEC
T ss_pred ---CCCC-cEEEecCCCHH-HHHhhCCEEEECC------CHHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEc
Confidence 2454 89999988777 9999999999653 34788999999999995 4445677888888899988
Q ss_pred cCC--CHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 001292 551 QKD--NPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILEN 604 (1106)
Q Consensus 551 ~~~--D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLyes 604 (1106)
+.+ ++++|+++|.++++|++. ++++++.+++.....-+...++.+++++..
T Consensus 347 ~~~~~~~~~l~~~~~~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 399 (402)
T 3ia7_A 347 RPDQLEPASIREAVERLAADSAV---RERVRRMQRDILSSGGPARAADEVEAYLGR 399 (402)
T ss_dssp CGGGCSHHHHHHHHHHHHHCHHH---HHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHcCHHH---HHHHHHHHHHHhhCChHHHHHHHHHHHHhh
Confidence 766 899999999999999987 466777777666555455555566666653
No 38
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.54 E-value=1e-12 Score=148.64 Aligned_cols=328 Identities=15% Similarity=0.075 Sum_probs=186.3
Q ss_pred CCCCCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCC------------ch-------------------H
Q 001292 219 GVRPPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGN------------SH-------------------S 267 (1106)
Q Consensus 219 g~r~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~------------~~-------------------~ 267 (1106)
..+.+||+++.. ...|-...+++|+++|+++||+|++++..... .. .
T Consensus 17 ~~~m~rIl~~~~--~~~GHv~p~l~La~~L~~~Gh~V~v~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (415)
T 3rsc_A 17 GRHMAHLLIVNV--ASHGLILPTLTVVTELVRRGHRVSYVTAGGFAEPVRAAGATVVPYQSEIIDADAAEVFGSDDLGVR 94 (415)
T ss_dssp --CCCEEEEECC--SCHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCEEEECCCSTTTCCHHHHHHSSSSCHH
T ss_pred cccCCEEEEEeC--CCccccccHHHHHHHHHHCCCEEEEEeCHHHHHHHHhcCCEEEeccccccccccchhhccccHHHH
Confidence 344578988875 35677778899999999999999999853210 00 0
Q ss_pred ----HHH----HHhHHHHHhhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchh-----
Q 001292 268 ----LWE----QIAGQISILGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPV----- 334 (1106)
Q Consensus 268 ----i~r----~lg~lvkiIr~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~----- 334 (1106)
..+ ....+...++..+||+|+...+.... ..+..+. .++|+|...|+.........
T Consensus 95 ~~~~~~~~~~~~~~~l~~~l~~~~PDlVi~d~~~~~~-~~~aA~~----------~giP~v~~~~~~~~~~~~~~~~~~~ 163 (415)
T 3rsc_A 95 PHLMYLRENVSVLRATAEALDGDVPDLVLYDDFPFIA-GQLLAAR----------WRRPAVRLSAAFASNEHYSFSQDMV 163 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCCSEEEEESTTHHH-HHHHHHH----------TTCCEEEEESSCCCCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCEEEECchhhhH-HHHHHHH----------hCCCEEEEEecccccCccccccccc
Confidence 111 12235667778899999875333333 2333322 68999998876422111000
Q ss_pred ------hh--hhhHHhHHHHHHHHh----------ccc-cEEEecCCChhhhhcCCCCCCEEEeCCCCCCcccccccCcc
Q 001292 335 ------YV--ERGFQNLLSYWKSVF----------SRV-NVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKS 395 (1106)
Q Consensus 335 ------Y~--~~gleklis~~~~~l----------~~A-D~VIa~S~~~~~~~~gi~~~KI~VIpN~GVDl~~~e~F~ps 395 (1106)
.+ .......+..+...+ ... +..++...............++.+++.. +.. . .
T Consensus 164 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vGp~-~~~----~---~ 235 (415)
T 3rsc_A 164 TLAGTIDPLDLPVFRDTLRDLLAEHGLSRSVVDCWNHVEQLNLVFVPKAFQIAGDTFDDRFVFVGPC-FDD----R---R 235 (415)
T ss_dssp HHHTCCCGGGCHHHHHHHHHHHHHTTCCCCHHHHHTCCCSEEEESSCTTTSTTGGGCCTTEEECCCC-CCC----C---G
T ss_pred cccccCChhhHHHHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcCcccCCCcccCCCceEEeCCC-CCC----c---c
Confidence 00 000111111111111 111 5555544332222211113345565431 111 0 0
Q ss_pred hhHHHHHHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHH
Q 001292 396 HEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVA 475 (1106)
Q Consensus 396 ~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLa 475 (1106)
....+. ...++...++++.|+... +..+....+++++ ... + +++++.+|.++.. +.++
T Consensus 236 -~~~~~~--~~~~~~~~v~v~~Gs~~~--~~~~~~~~~~~al-------~~~----~-~~~v~~~g~~~~~--~~l~--- 293 (415)
T 3rsc_A 236 -FLGEWT--RPADDLPVVLVSLGTTFN--DRPGFFRDCARAF-------DGQ----P-WHVVMTLGGQVDP--AALG--- 293 (415)
T ss_dssp -GGCCCC--CCSSCCCEEEEECTTTSC--CCHHHHHHHHHHH-------TTS----S-CEEEEECTTTSCG--GGGC---
T ss_pred -cCcCcc--ccCCCCCEEEEECCCCCC--ChHHHHHHHHHHH-------hcC----C-cEEEEEeCCCCCh--HHhc---
Confidence 000000 012334567777787543 1101122223222 111 2 5666668876543 2222
Q ss_pred HHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec----CCCCchhhhccCCeEEEEc
Q 001292 476 SRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP----DFPIIKEYVAEGAQVIFFQ 551 (1106)
Q Consensus 476 eklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS----D~gGI~EiV~Dg~nG~LV~ 551 (1106)
.+.+ +|.+.|+..+. .+|..||++|.. +...+++|||++|+|+|+. +...+.+.+.+...|..++
T Consensus 294 ---~~~~-~v~~~~~~~~~-~ll~~ad~~v~~------~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~g~g~~~~ 362 (415)
T 3rsc_A 294 ---DLPP-NVEAHRWVPHV-KVLEQATVCVTH------GGMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLP 362 (415)
T ss_dssp ---CCCT-TEEEESCCCHH-HHHHHEEEEEES------CCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHHTCEEECC
T ss_pred ---CCCC-cEEEEecCCHH-HHHhhCCEEEEC------CcHHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHcCCEEEcc
Confidence 3455 89999988776 999999999965 3357899999999999994 5555677777777888887
Q ss_pred CC--CHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Q 001292 552 KD--NPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILE 603 (1106)
Q Consensus 552 ~~--D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLye 603 (1106)
.+ ++++|+++|.++++|++. ++++.+.+.+.....-+...++.+++++.
T Consensus 363 ~~~~~~~~l~~~i~~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 413 (415)
T 3rsc_A 363 GEKADGDTLLAAVGAVAADPAL---LARVEAMRGHVRRAGGAARAADAVEAYLA 413 (415)
T ss_dssp GGGCCHHHHHHHHHHHHTCHHH---HHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHcCHHH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 65 899999999999999987 46677777666655445555555555554
No 39
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.53 E-value=4.7e-13 Score=151.28 Aligned_cols=319 Identities=13% Similarity=0.072 Sum_probs=181.2
Q ss_pred CCCCCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCC------------------chHH------------
Q 001292 219 GVRPPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGN------------------SHSL------------ 268 (1106)
Q Consensus 219 g~r~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~------------------~~~i------------ 268 (1106)
..+.+||+|+... ..|....+++|+++|+++||+|+|++. ... ....
T Consensus 17 ~~~~MrIl~~~~~--~~Ghv~~~~~La~~L~~~GheV~v~~~-~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (398)
T 3oti_A 17 EGRHMRVLFVSSP--GIGHLFPLIQLAWGFRTAGHDVLIAVA-EHADRAAAAGLEVVDVAPDYSAVKVFEQVAKDNPRFA 93 (398)
T ss_dssp --CCCEEEEECCS--SHHHHGGGHHHHHHHHHTTCEEEEEES-SCHHHHHTTTCEEEESSTTCCHHHHHHHHHHHCHHHH
T ss_pred hhhcCEEEEEcCC--CcchHhHHHHHHHHHHHCCCEEEEecc-chHHHHHhCCCeeEecCCccCHHHHhhhcccCCcccc
Confidence 3456899999764 456666788999999999999999986 310 0000
Q ss_pred ------------------H----HHHhHHHHHhhccCccEEEEccccHHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCC
Q 001292 269 ------------------W----EQIAGQISILGQEQYSLIDWSIFDGIIADSLEAKEAISSLMQEPFHSIPLVWIIQED 326 (1106)
Q Consensus 269 ------------------~----r~lg~lvkiIr~~~pDiIh~~~~~~i~v~~La~k~~idII~te~~~gIPVI~tIHna 326 (1106)
. .....+..+++..+||+|+..... +...+..+. .++|+|.+.++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVv~d~~~--~~~~~aA~~----------~giP~v~~~~~~ 161 (398)
T 3oti_A 94 ETVATRPAIDLEEWGVQIAAVNRPLVDGTMALVDDYRPDLVVYEQGA--TVGLLAADR----------AGVPAVQRNQSA 161 (398)
T ss_dssp HTGGGSCCCSGGGGHHHHHHHHGGGHHHHHHHHHHHCCSEEEEETTC--HHHHHHHHH----------HTCCEEEECCTT
T ss_pred ccccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECchh--hHHHHHHHH----------cCCCEEEEeccC
Confidence 0 011225667777899988774222 222233322 578999876663
Q ss_pred cccccchhhhhhhHHhHHHHHHHHhccccEEEecCCChhhhhcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcC
Q 001292 327 SLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENG 406 (1106)
Q Consensus 327 ~Ls~r~~~Y~~~gleklis~~~~~l~~AD~VIa~S~~~~~~~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lG 406 (1106)
.............+..+...+.......+.++.................+.+++..+-. .. ...+.
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---------~~~~~ 227 (398)
T 3oti_A 162 WRTRGMHRSIASFLTDLMDKHQVSLPEPVATIESFPPSLLLEAEPEGWFMRWVPYGGGA-----VL---------GDRLP 227 (398)
T ss_dssp CCCTTHHHHHHTTCHHHHHHTTCCCCCCSEEECSSCGGGGTTSCCCSBCCCCCCCCCCE-----EC---------CSSCC
T ss_pred CCccchhhHHHHHHHHHHHHcCCCCCCCCeEEEeCCHHHCCCCCCCCCCccccCCCCCc-----CC---------chhhh
Confidence 22111110000001111111100011224444443322211100011111122211100 00 00011
Q ss_pred -CCCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcE
Q 001292 407 -FLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSV 485 (1106)
Q Consensus 407 -L~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV 485 (1106)
.+++..+++++|++...+++.+....+++++.. .++++ ++++.+.+. +.++ .+.+ +|
T Consensus 228 ~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~------------~~~~~-v~~~g~~~~--~~l~------~~~~-~v 285 (398)
T 3oti_A 228 PVPARPEVAITMGTIELQAFGIGAVEPIIAAAGE------------VDADF-VLALGDLDI--SPLG------TLPR-NV 285 (398)
T ss_dssp CCCSSCEEEECCTTTHHHHHCGGGHHHHHHHHHT------------SSSEE-EEECTTSCC--GGGC------SCCT-TE
T ss_pred cCCCCCEEEEEcCCCccccCcHHHHHHHHHHHHc------------CCCEE-EEEECCcCh--hhhc------cCCC-cE
Confidence 123456777788764421223334444444421 24564 455544433 2222 3455 89
Q ss_pred EEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEe----cCCCCch--hhhccCCeEEEEcCC--CHHH
Q 001292 486 RHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVIT----PDFPIIK--EYVAEGAQVIFFQKD--NPEG 557 (1106)
Q Consensus 486 ~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIA----SD~gGI~--EiV~Dg~nG~LV~~~--D~ee 557 (1106)
.+.|+. ++..+|..||++|.. +.+.+++|||++|+|+|+ .+..++. +.+.+...|++++.. +++.
T Consensus 286 ~~~~~~-~~~~ll~~ad~~v~~------~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~~g~g~~~~~~~~~~~~ 358 (398)
T 3oti_A 286 RAVGWT-PLHTLLRTCTAVVHH------GGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDADL 358 (398)
T ss_dssp EEESSC-CHHHHHTTCSEEEEC------CCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHHHTSEEECCGGGCCHHH
T ss_pred EEEccC-CHHHHHhhCCEEEEC------CCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHHCCCEEeeCCCCCCHHH
Confidence 999998 899999999999954 556899999999999999 6778888 999888899998765 5666
Q ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 001292 558 LSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARIL 602 (1106)
Q Consensus 558 LAeAI~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLy 602 (1106)
|+ ++++|+++ +++|++.+++......+.+.++.+++++
T Consensus 359 l~----~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 359 LR----RLIGDESL---RTAAREVREEMVALPTPAETVRRIVERI 396 (398)
T ss_dssp HH----HHHHCHHH---HHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HH----HHHcCHHH---HHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 65 88899987 5778888888887777777776666553
No 40
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.49 E-value=1.4e-12 Score=149.35 Aligned_cols=307 Identities=12% Similarity=0.047 Sum_probs=188.4
Q ss_pred CEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCC---Cc-------------------------hHHHHHHhH
Q 001292 223 PRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSG---NS-------------------------HSLWEQIAG 274 (1106)
Q Consensus 223 ~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg---~~-------------------------~~i~r~lg~ 274 (1106)
.++++|+|. -++-+-+.+++++|++. ++..++.++.. .. ....+.+..
T Consensus 10 ~~~~~v~Gt---Rpe~~k~~p~~~~l~~~-~~~~~~~tgqh~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~ 85 (385)
T 4hwg_A 10 LKVMTIVGT---RPELIKLCCVISEFDKH-TKHILVHTGQNYAYELNQVFFDDMGIRKPDYFLEVAADNTAKSIGLVIEK 85 (385)
T ss_dssp CEEEEEECS---HHHHHHHHHHHHHHHHH-SEEEEEECSCHHHHHHTHHHHC-CCCCCCSEECCCCCCCSHHHHHHHHHH
T ss_pred hheeEEEEc---CHhHHHHHHHHHHHHhc-CCEEEEEeCCCCChhHHHHHHhhCCCCCCceecCCCCCCHHHHHHHHHHH
Confidence 356666643 35567788899999887 77766654321 01 111112223
Q ss_pred HHHHhhccCccEEEEcccc-HHHHHHHHHHHhhhhcccCCCCCCcEEEEEcCCcccccchhhhhhhHHhHHHHHHHHhcc
Q 001292 275 QISILGQEQYSLIDWSIFD-GIIADSLEAKEAISSLMQEPFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSR 353 (1106)
Q Consensus 275 lvkiIr~~~pDiIh~~~~~-~i~v~~La~k~~idII~te~~~gIPVI~tIHna~Ls~r~~~Y~~~gleklis~~~~~l~~ 353 (1106)
+.++++..+||+++.+... ..+. .++.+. .+||++.. +. ++...-..++. .....+. -..
T Consensus 86 l~~~l~~~kPD~Vlv~gd~~~~~a-alaA~~----------~~IPv~h~-ea-glrs~~~~~pe----e~nR~~~--~~~ 146 (385)
T 4hwg_A 86 VDEVLEKEKPDAVLFYGDTNSCLS-AIAAKR----------RKIPIFHM-EA-GNRCFDQRVPE----EINRKII--DHI 146 (385)
T ss_dssp HHHHHHHHCCSEEEEESCSGGGGG-HHHHHH----------TTCCEEEE-SC-CCCCSCTTSTH----HHHHHHH--HHH
T ss_pred HHHHHHhcCCcEEEEECCchHHHH-HHHHHH----------hCCCEEEE-eC-CCccccccCcH----HHHHHHH--Hhh
Confidence 6778888999999887533 2233 444432 68997654 33 22110001111 1111111 135
Q ss_pred ccEEEecCCChhhh--hcCCCCCCEEEeCCCCCCcccccccC-cchhHHHHHHHcCCCCCcEEEEEEcccCccccccCCH
Q 001292 354 VNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAVEAYS-KSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDY 430 (1106)
Q Consensus 354 AD~VIa~S~~~~~~--~~gi~~~KI~VIpN~GVDl~~~e~F~-ps~s~~~LR~~lGL~~d~~VIL~VGRl~~y~kg~Kg~ 430 (1106)
+|.+++++...... ..|++++++.+++|.++|. ..+. +...+..+++++|++++..+++..||... .+..++.
T Consensus 147 a~~~~~~te~~~~~l~~~G~~~~~I~vtGnp~~D~---~~~~~~~~~~~~~~~~lgl~~~~~iLvt~hr~e~-~~~~~~l 222 (385)
T 4hwg_A 147 SDVNITLTEHARRYLIAEGLPAELTFKSGSHMPEV---LDRFMPKILKSDILDKLSLTPKQYFLISSHREEN-VDVKNNL 222 (385)
T ss_dssp CSEEEESSHHHHHHHHHTTCCGGGEEECCCSHHHH---HHHHHHHHHHCCHHHHTTCCTTSEEEEEECCC------CHHH
T ss_pred hceeecCCHHHHHHHHHcCCCcCcEEEECCchHHH---HHHhhhhcchhHHHHHcCCCcCCEEEEEeCCchh-cCcHHHH
Confidence 78888888765544 5688888999999876774 1121 11234457888999876666666665321 0112467
Q ss_pred HHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHc-C-CC-CCcEEEcCCh--hhHHHHHHHcCeEE
Q 001292 431 AVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRL-G-LL-EHSVRHYGFN--GDVNGVLLMADIVL 505 (1106)
Q Consensus 431 dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaekl-G-L~-d~rV~flG~~--eDL~~LyaaADVfV 505 (1106)
..+++|+..+.+++ ++. ++++.+| .+++.++++ | +. ..+|+++++. .++..+|+.||+++
T Consensus 223 ~~ll~al~~l~~~~--------~~~--vv~p~~p-----~~~~~l~~~~~~~~~~~~v~l~~~lg~~~~~~l~~~adlvv 287 (385)
T 4hwg_A 223 KELLNSLQMLIKEY--------NFL--IIFSTHP-----RTKKRLEDLEGFKELGDKIRFLPAFSFTDYVKLQMNAFCIL 287 (385)
T ss_dssp HHHHHHHHHHHHHH--------CCE--EEEEECH-----HHHHHHHTSGGGGGTGGGEEECCCCCHHHHHHHHHHCSEEE
T ss_pred HHHHHHHHHHHhcC--------CeE--EEEECCh-----HHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhCcEEE
Confidence 88899998776432 334 3444444 255556555 4 31 1289998865 37899999999999
Q ss_pred EccCCCCCCCcHHHHHHHHhCCCEEecCC-CCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Q 001292 506 YGSSQVEQGFPSLIVRAMTFGIPVITPDF-PIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGR 583 (1106)
Q Consensus 506 ~PS~~EeEGFGlvLLEAMA~G~PVIASD~-gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mGe~Ar 583 (1106)
..| |.+.+||+++|+|||+.+. .+..|.+..| ++.++. .|++++++++..+++|+.. ++.|+.++.
T Consensus 288 t~S-------Ggv~~EA~alG~Pvv~~~~~ter~e~v~~G-~~~lv~-~d~~~i~~ai~~ll~d~~~---~~~m~~~~~ 354 (385)
T 4hwg_A 288 SDS-------GTITEEASILNLPALNIREAHERPEGMDAG-TLIMSG-FKAERVLQAVKTITEEHDN---NKRTQGLVP 354 (385)
T ss_dssp ECC-------TTHHHHHHHTTCCEEECSSSCSCTHHHHHT-CCEECC-SSHHHHHHHHHHHHTTCBT---TBCCSCCCH
T ss_pred ECC-------ccHHHHHHHcCCCEEEcCCCccchhhhhcC-ceEEcC-CCHHHHHHHHHHHHhChHH---HHHhhccCC
Confidence 554 2357999999999999754 3457777666 666665 4899999999999999886 344444333
No 41
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.40 E-value=4e-11 Score=134.44 Aligned_cols=161 Identities=15% Similarity=0.119 Sum_probs=111.5
Q ss_pred CcEEEEEEcccCcc---ccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEE
Q 001292 410 DEIVVVVVGSSFFY---NELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVR 486 (1106)
Q Consensus 410 d~~VIL~VGRl~~y---~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~ 486 (1106)
...+++++|++... +.+.+....+++++..+ ++++++++|. ++ .+.++. +++ +|.
T Consensus 210 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~------------~~~~~~~~g~-~~--~~~l~~------~~~-~v~ 267 (384)
T 2p6p_A 210 RQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRW------------DVELIVAAPD-TV--AEALRA------EVP-QAR 267 (384)
T ss_dssp SCEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTT------------TCEEEEECCH-HH--HHHHHH------HCT-TSE
T ss_pred CCEEEEECCCCCccccccccHHHHHHHHHHHhcC------------CcEEEEEeCC-CC--HHhhCC------CCC-ceE
Confidence 45688888987652 10235677777777421 3464444453 22 133321 344 788
Q ss_pred EcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCC----chhhhccCCeEEEEcCC--CHHHHHH
Q 001292 487 HYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPI----IKEYVAEGAQVIFFQKD--NPEGLSR 560 (1106)
Q Consensus 487 flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gG----I~EiV~Dg~nG~LV~~~--D~eeLAe 560 (1106)
+ |+. +...+|..||++|.. +++++++|||++|+|+|+....+ +.+.+.+...|++++.. ++++|++
T Consensus 268 ~-~~~-~~~~~l~~~d~~v~~------~G~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~~~~g~g~~~~~~~~~~~~l~~ 339 (384)
T 2p6p_A 268 V-GWT-PLDVVAPTCDLLVHH------AGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLPGEDSTEAIAD 339 (384)
T ss_dssp E-ECC-CHHHHGGGCSEEEEC------SCTTHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTCCCHHHHHH
T ss_pred E-cCC-CHHHHHhhCCEEEeC------CcHHHHHHHHHhCCCEEEccCcccchHHHHHHHHCCCeEecCcCCCCHHHHHH
Confidence 9 977 467899999999975 44578999999999999987643 66777776789888764 7999999
Q ss_pred HHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Q 001292 561 AFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILE 603 (1106)
Q Consensus 561 AI~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLye 603 (1106)
+|.++++|+++ ++++++.+++.....-..+.+....+++.
T Consensus 340 ~i~~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 379 (384)
T 2p6p_A 340 SCQELQAKDTY---ARRAQDLSREISGMPLPATVVTALEQLAH 379 (384)
T ss_dssp HHHHHHHCHHH---HHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCHHH---HHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 99999999987 56777777776665555555555555443
No 42
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.21 E-value=5e-09 Score=119.30 Aligned_cols=132 Identities=16% Similarity=0.103 Sum_probs=91.6
Q ss_pred CCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEe
Q 001292 452 GSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVIT 531 (1106)
Q Consensus 452 PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIA 531 (1106)
.++++++++|.+.+. +.++ .+++ +|.+.++..+. .+|+.||++|.. ++.++++|||++|+|+|+
T Consensus 283 ~~~~~~~~~g~~~~~--~~~~------~~~~-~v~~~~~~~~~-~~l~~~d~~v~~------~G~~t~~Ea~~~G~P~i~ 346 (424)
T 2iya_A 283 LDWHVVLSVGRFVDP--ADLG------EVPP-NVEVHQWVPQL-DILTKASAFITH------AGMGSTMEALSNAVPMVA 346 (424)
T ss_dssp CSSEEEEECCTTSCG--GGGC------SCCT-TEEEESSCCHH-HHHTTCSEEEEC------CCHHHHHHHHHTTCCEEE
T ss_pred CCcEEEEEECCcCCh--HHhc------cCCC-CeEEecCCCHH-HHHhhCCEEEEC------CchhHHHHHHHcCCCEEE
Confidence 345666778876543 2221 2455 89999988777 899999998854 446899999999999999
Q ss_pred cCCC----CchhhhccCCeEEEEcCC--CHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 001292 532 PDFP----IIKEYVAEGAQVIFFQKD--NPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARIL 602 (1106)
Q Consensus 532 SD~g----GI~EiV~Dg~nG~LV~~~--D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLy 602 (1106)
.... .+.+.+.+...|+.++.. ++++|+++|.++++|++. ++++.+.+++.....-....++..++++
T Consensus 347 ~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 420 (424)
T 2iya_A 347 VPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLREAVLAVASDPGV---AERLAAVRQEIREAGGARAAADILEGIL 420 (424)
T ss_dssp CCCSHHHHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHHHHHCHHH---HHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred ecCccchHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHHHHHcCHHH---HHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 8664 345666666788887654 899999999999999987 3555555554443322233333444443
No 43
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.20 E-value=4.9e-10 Score=128.83 Aligned_cols=161 Identities=13% Similarity=0.086 Sum_probs=107.8
Q ss_pred CcEEEEEEcccCcc-ccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEc
Q 001292 410 DEIVVVVVGSSFFY-NELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHY 488 (1106)
Q Consensus 410 d~~VIL~VGRl~~y-~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~fl 488 (1106)
...+++++|++... +...+....+++++..+ ++++++.+| +++. +.++ .+++ +|.+.
T Consensus 267 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~------------~~~~v~~~g-~~~~--~~l~------~~~~-~v~~~ 324 (441)
T 2yjn_A 267 RRRVCLTLGISSRENSIGQVSIEELLGAVGDV------------DAEIIATFD-AQQL--EGVA------NIPD-NVRTV 324 (441)
T ss_dssp SCEEEEEC----------CCSTTTTHHHHHTS------------SSEEEECCC-TTTT--SSCS------SCCS-SEEEC
T ss_pred CCEEEEECCCCcccccChHHHHHHHHHHHHcC------------CCEEEEEEC-Ccch--hhhc------cCCC-CEEEe
Confidence 34577888876541 01245666777777322 345444444 3322 2121 3455 89999
Q ss_pred CChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCC----CchhhhccCCeEEEEcCC--CHHHHHHHH
Q 001292 489 GFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYVAEGAQVIFFQKD--NPEGLSRAF 562 (1106)
Q Consensus 489 G~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~g----GI~EiV~Dg~nG~LV~~~--D~eeLAeAI 562 (1106)
|+..+ ..+|..||++|.. +++.+++|||++|+|+|+.... .+.+.+.+...|++++.. ++++|+++|
T Consensus 325 ~~~~~-~~ll~~ad~~V~~------~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i 397 (441)
T 2yjn_A 325 GFVPM-HALLPTCAATVHH------GGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQLRESV 397 (441)
T ss_dssp CSCCH-HHHGGGCSEEEEC------CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTTCCHHHHHHHH
T ss_pred cCCCH-HHHHhhCCEEEEC------CCHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHHcCCEEEcccccCCHHHHHHHH
Confidence 98866 7789999999964 5568999999999999999774 356777777789888765 899999999
Q ss_pred HHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 001292 563 SLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARIL 602 (1106)
Q Consensus 563 ~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLy 602 (1106)
.++++|++. ++++++.+++.....-..+.++.+++++
T Consensus 398 ~~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 434 (441)
T 2yjn_A 398 KRVLDDPAH---RAGAARMRDDMLAEPSPAEVVGICEELA 434 (441)
T ss_dssp HHHHHCHHH---HHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHhcCHHH---HHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999987 5667777776666555555555555544
No 44
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=99.15 E-value=1.2e-09 Score=131.61 Aligned_cols=224 Identities=9% Similarity=0.012 Sum_probs=143.4
Q ss_pred hccccEEEecCCChhhhhcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCCCCC--cEEEEEEcccCccccccC
Q 001292 351 FSRVNVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKD--EIVVVVVGSSFFYNELSW 428 (1106)
Q Consensus 351 l~~AD~VIa~S~~~~~~~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL~~d--~~VIL~VGRl~~y~kg~K 428 (1106)
+...|++++....... .....+++..+|++.+ .|.|.... ..|..++++.+ .++++.+.+. .|
T Consensus 388 l~~iDY~i~D~~~~~~--~~~ysEklirLP~~~~------~~~p~~~~-p~r~~~~lp~~~G~v~Fg~fn~~------~K 452 (631)
T 3q3e_A 388 SDFIEYVIVEDDYVGS--EECFSETLLRLPKDAL------PYVPSALA-PEKVDYLLRENPEVVNIGIASTT------MK 452 (631)
T ss_dssp CTTCCEEEEEGGGCCC--GGGCSSEEEEECTTSS------CCCCCTTC-CSSCCCCCCSCCSEEEEEEEECS------TT
T ss_pred cccCCEEEeCCCCCCc--ccCceeeEEECCCCcc------ccCCcccC-CccccccCCcCCCeEEEEECCcc------cc
Confidence 3456777775422111 2234678888887422 12221111 11455677765 6677777653 45
Q ss_pred CHHHHHHHHHHhHHHHHhhccCCCCeEE-EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCCh--hhHHHHHHHcCeEE
Q 001292 429 DYAVAMHDVGPLLIKYARRNSVEGSFKF-VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFN--GDVNGVLLMADIVL 505 (1106)
Q Consensus 429 g~dlLLeA~k~Ll~k~aklk~~~Pdikf-LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~--eDL~~LyaaADVfV 505 (1106)
..+.+++++.+++++. |+..+ ++++|.++.. ...+.+.+.+.|+.+ +|.|.|.. .+....|+.+||++
T Consensus 453 i~p~~l~~WarIL~~v-------P~s~L~l~~~g~~~g~-~~~~~~~~~~~GI~~-Rv~F~g~~p~~e~la~y~~aDIfL 523 (631)
T 3q3e_A 453 LNPYFLEALKAIRDRA-------KVKVHFHFALGQSNGI-THPYVERFIKSYLGD-SATAHPHSPYHQYLRILHNCDMMV 523 (631)
T ss_dssp CCHHHHHHHHHHHHHC-------SSEEEEEEEESSCCGG-GHHHHHHHHHHHHGG-GEEEECCCCHHHHHHHHHTCSEEE
T ss_pred CCHHHHHHHHHHHHhC-------CCcEEEEEecCCCchh-hHHHHHHHHHcCCCc-cEEEcCCCCHHHHHHHHhcCcEEE
Confidence 6788999999888654 55443 2346754321 233444456779986 99999954 67889999999999
Q ss_pred EccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhc------cCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHH
Q 001292 506 YGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVA------EGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVA 579 (1106)
Q Consensus 506 ~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~------Dg~nG~LV~~~D~eeLAeAI~~LLsDpelRk~r~~mG 579 (1106)
-|+.+ ++|++.+|||+||+|||+..-.....-+. -|-.++++. .|.+++++...+|.+|+++ ++++.
T Consensus 524 Dpfpy---~GgtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LIA-~d~eeYv~~Av~La~D~~~---l~~LR 596 (631)
T 3q3e_A 524 NPFPF---GNTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIA-NTVDEYVERAVRLAENHQE---RLELR 596 (631)
T ss_dssp CCSSS---CCSHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGEE-SSHHHHHHHHHHHHHCHHH---HHHHH
T ss_pred eCCcc---cCChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhcCCCcceec-CCHHHHHHHHHHHhCCHHH---HHHHH
Confidence 99865 56999999999999999976655554332 233332222 4799999999999999998 57777
Q ss_pred HHHHHHHHH--hcHHHHHHHHHHHHHHHh
Q 001292 580 SAGRLHAKN--MLALDCVTRYARILENVL 606 (1106)
Q Consensus 580 e~Are~ake--~fsee~v~~Y~eLyeslL 606 (1106)
++.++.... .|. ..+.+|+++|+++.
T Consensus 597 ~~Lr~~~~~spLFd-~~~~~~e~~ye~~~ 624 (631)
T 3q3e_A 597 RYIIENNGLNTLFT-GDPRPMGQVFLEKL 624 (631)
T ss_dssp HHHHHSCCHHHHTC-SCCTHHHHHHHHHH
T ss_pred HHHHHHhhhCCCcc-hhHHHHHHHHHHHH
Confidence 777666432 232 22335555555543
No 45
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=98.96 E-value=4.1e-08 Score=110.08 Aligned_cols=84 Identities=12% Similarity=0.083 Sum_probs=63.7
Q ss_pred CCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec----CCCCchhhhccCCeEEEEcCCC
Q 001292 479 GLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP----DFPIIKEYVAEGAQVIFFQKDN 554 (1106)
Q Consensus 479 GL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS----D~gGI~EiV~Dg~nG~LV~~~D 554 (1106)
.+++ +|.+.++. ....+|..+|+||.- ++.++++|||++|+|+|+. |...+.+.+.+...|+.++ +
T Consensus 285 ~~~~-~v~~~~~~-p~~~lL~~~~~~v~h------~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~G~g~~l~--~ 354 (400)
T 4amg_A 285 ELPA-NVRVVEWI-PLGALLETCDAIIHH------GGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDAE--A 354 (400)
T ss_dssp CCCT-TEEEECCC-CHHHHHTTCSEEEEC------CCHHHHHHHHHHTCCEEECCC---CHHHHHHHHHHTSEEECC--T
T ss_pred cCCC-CEEEEeec-CHHHHhhhhhheecc------CCccHHHHHHHhCCCEEEecCcccHHHHHHHHHHCCCEEEcC--C
Confidence 4555 89999876 467789999998843 5668999999999999985 4444666676655676665 4
Q ss_pred HHHHHHHHHHHHhCcccH
Q 001292 555 PEGLSRAFSLFISNGKLS 572 (1106)
Q Consensus 555 ~eeLAeAI~~LLsDpelR 572 (1106)
.+.++++|.++++|+++|
T Consensus 355 ~~~~~~al~~lL~d~~~r 372 (400)
T 4amg_A 355 GSLGAEQCRRLLDDAGLR 372 (400)
T ss_dssp TTCSHHHHHHHHHCHHHH
T ss_pred CCchHHHHHHHHcCHHHH
Confidence 445788999999999874
No 46
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=98.92 E-value=4.2e-09 Score=105.41 Aligned_cols=131 Identities=17% Similarity=0.154 Sum_probs=92.5
Q ss_pred CCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEc
Q 001292 409 KDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHY 488 (1106)
Q Consensus 409 ~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~fl 488 (1106)
+...+++++|++.. ....|....+++++..+ +.++++++| +... + .+++ +|++.
T Consensus 20 ~~~~vlv~~Gs~~~-~~~~~~~~~~~~al~~~------------~~~~~~~~g-~~~~--~---------~~~~-~v~~~ 73 (170)
T 2o6l_A 20 ENGVVVFSLGSMVS-NMTEERANVIASALAQI------------PQKVLWRFD-GNKP--D---------TLGL-NTRLY 73 (170)
T ss_dssp TTCEEEEECCSCCT-TCCHHHHHHHHHHHTTS------------SSEEEEECC-SSCC--T---------TCCT-TEEEE
T ss_pred CCCEEEEECCCCcc-cCCHHHHHHHHHHHHhC------------CCeEEEEEC-CcCc--c---------cCCC-cEEEe
Confidence 34668888887642 11134555666665221 245444444 3322 1 3455 89999
Q ss_pred CChhhHHHHH--HHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCC----CchhhhccCCeEEEEcCC--CHHHHHH
Q 001292 489 GFNGDVNGVL--LMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYVAEGAQVIFFQKD--NPEGLSR 560 (1106)
Q Consensus 489 G~~eDL~~Ly--aaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~g----GI~EiV~Dg~nG~LV~~~--D~eeLAe 560 (1106)
|+..+ ..++ ..||++|.. +++.+++|||++|+|+|+.... +..+.+.+...|++++.. ++++|++
T Consensus 74 ~~~~~-~~~l~~~~ad~~I~~------~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~ 146 (170)
T 2o6l_A 74 KWIPQ-NDLLGHPKTRAFITH------GGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDLLN 146 (170)
T ss_dssp SSCCH-HHHHTSTTEEEEEEC------CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHHHHH
T ss_pred cCCCH-HHHhcCCCcCEEEEc------CCccHHHHHHHcCCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHHHHH
Confidence 98755 4566 999999964 5579999999999999999764 456778777899998766 8999999
Q ss_pred HHHHHHhCcccH
Q 001292 561 AFSLFISNGKLS 572 (1106)
Q Consensus 561 AI~~LLsDpelR 572 (1106)
+|.++++|++++
T Consensus 147 ~i~~ll~~~~~~ 158 (170)
T 2o6l_A 147 ALKRVINDPSYK 158 (170)
T ss_dssp HHHHHHHCHHHH
T ss_pred HHHHHHcCHHHH
Confidence 999999998763
No 47
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.91 E-value=1.2e-07 Score=117.02 Aligned_cols=182 Identities=12% Similarity=0.093 Sum_probs=122.8
Q ss_pred HHHcCCCCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCC
Q 001292 402 RKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLL 481 (1106)
Q Consensus 402 R~~lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~ 481 (1106)
|..+|++++.++++.+.++. |=...+++.+.+++.+. |+.+ |++....... ...+++.+++.|+.
T Consensus 514 R~~~gLp~~~v~f~~fN~~~------Ki~p~~~~~W~~IL~~v-------P~S~-L~Ll~~~~~~-~~~l~~~~~~~gi~ 578 (723)
T 4gyw_A 514 RSQYGLPEDAIVYCNFNQLY------KIDPSTLQMWANILKRV-------PNSV-LWLLRFPAVG-EPNIQQYAQNMGLP 578 (723)
T ss_dssp GGGGTCCTTSEEEECCSCGG------GCCHHHHHHHHHHHHHC-------SSEE-EEEEETTGGG-HHHHHHHHHHTTCC
T ss_pred hhhcCCCCCCEEEEeCCccc------cCCHHHHHHHHHHHHhC-------CCCe-EEEEeCcHHH-HHHHHHHHHhcCCC
Confidence 56788998988887776543 34466788888887654 7877 4555544332 47889999999998
Q ss_pred CCcEEEcCC--hhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCch-----hhhcc-CCeEEEEcCC
Q 001292 482 EHSVRHYGF--NGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIK-----EYVAE-GAQVIFFQKD 553 (1106)
Q Consensus 482 d~rV~flG~--~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~-----EiV~D-g~nG~LV~~~ 553 (1106)
..+|+|.+. ..+....|..+||++=|--+ +.+.+.+||+.+|+|||+-.-.... .++.. |-..++ ..
T Consensus 579 ~~r~~f~~~~~~~~~l~~~~~~Di~LDt~p~---~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~i--a~ 653 (723)
T 4gyw_A 579 QNRIIFSPVAPKEEHVRRGQLADVCLDTPLC---NGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELI--AK 653 (723)
T ss_dssp GGGEEEEECCCHHHHHHHGGGCSEEECCSSS---CCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGGB--CS
T ss_pred cCeEEECCCCCHHHHHHHhCCCeEEeCCCCc---CCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCcccc--cC
Confidence 779999994 46778889999999976555 7799999999999999985322111 11111 111112 25
Q ss_pred CHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH--hcH-HHHHHHHHHHHHHHh
Q 001292 554 NPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKN--MLA-LDCVTRYARILENVL 606 (1106)
Q Consensus 554 D~eeLAeAI~~LLsDpelRk~r~~mGe~Are~ake--~fs-ee~v~~Y~eLyeslL 606 (1106)
|.+++.+.-.+|.+|++. +.++...-++.... .|. ...+..+++.|+.+-
T Consensus 654 ~~~~Y~~~a~~la~d~~~---l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~~~~w 706 (723)
T 4gyw_A 654 NRQEYEDIAVKLGTDLEY---LKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMW 706 (723)
T ss_dssp SHHHHHHHHHHHHHCHHH---HHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCHHH---HHHHHHHHHHHHHhCcCcCHHHHHHHHHHHHHHHH
Confidence 899999999999999987 45554444444333 233 333335555555543
No 48
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=98.83 E-value=6.5e-07 Score=102.03 Aligned_cols=157 Identities=14% Similarity=-0.046 Sum_probs=102.5
Q ss_pred CcEEEEEEcccC-ccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEc
Q 001292 410 DEIVVVVVGSSF-FYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHY 488 (1106)
Q Consensus 410 d~~VIL~VGRl~-~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~fl 488 (1106)
+..++++.|++. . .+..+.++++++.+ +.++++++|.+... . ..+++ +|.+.
T Consensus 238 ~~~v~v~~Gs~~~~----~~~~~~~~~al~~~------------~~~~v~~~g~~~~~----~------~~~~~-~v~~~ 290 (415)
T 1iir_A 238 PPPVYLGFGSLGAP----ADAVRVAIDAIRAH------------GRRVILSRGWADLV----L------PDDGA-DCFAI 290 (415)
T ss_dssp SCCEEEECC---CC----HHHHHHHHHHHHHT------------TCCEEECTTCTTCC----C------SSCGG-GEEEC
T ss_pred CCeEEEeCCCCCCc----HHHHHHHHHHHHHC------------CCeEEEEeCCCccc----c------cCCCC-CEEEe
Confidence 355777888763 3 44455666666432 12445556766432 0 23454 89999
Q ss_pred CChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCC----chhhhccCCeEEEEcCC--CHHHHHHHH
Q 001292 489 GFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPI----IKEYVAEGAQVIFFQKD--NPEGLSRAF 562 (1106)
Q Consensus 489 G~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gG----I~EiV~Dg~nG~LV~~~--D~eeLAeAI 562 (1106)
++..+ ..+|..||++|.. +..++++|||++|+|+|+....+ ..+.+.+...|+.++.. ++++|+++|
T Consensus 291 ~~~~~-~~~l~~~d~~v~~------~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i 363 (415)
T 1iir_A 291 GEVNH-QVLFGRVAAVIHH------GGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAAL 363 (415)
T ss_dssp SSCCH-HHHGGGSSEEEEC------CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHH
T ss_pred CcCCh-HHHHhhCCEEEeC------CChhHHHHHHHcCCCEEECCCCCccHHHHHHHHHCCCcccCCcCCCCHHHHHHHH
Confidence 98765 4678999999964 44589999999999999986543 55667666788887653 799999999
Q ss_pred HHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcC
Q 001292 563 SLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILENVLNF 608 (1106)
Q Consensus 563 ~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLyeslLk~ 608 (1106)
.++ +|++. ++++.+.+++. ...+..+...+.+++++..
T Consensus 364 ~~l-~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~ 401 (415)
T 1iir_A 364 ATA-LTPET---HARATAVAGTI----RTDGAAVAARLLLDAVSRE 401 (415)
T ss_dssp HHH-TSHHH---HHHHHHHHHHS----CSCHHHHHHHHHHHHHHTC
T ss_pred HHH-cCHHH---HHHHHHHHHHH----hhcChHHHHHHHHHHHHhc
Confidence 999 88776 34444444332 2234444556666666553
No 49
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=98.76 E-value=1.9e-07 Score=106.45 Aligned_cols=138 Identities=17% Similarity=0.061 Sum_probs=91.4
Q ss_pred CcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcC
Q 001292 410 DEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYG 489 (1106)
Q Consensus 410 d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG 489 (1106)
+.++++..|++.. ..+....+++++..+ ++++++.+|..... ..++.+ +|.+.+
T Consensus 221 ~~~Vlv~~Gs~~~---~~~~~~~~~~al~~~------------~~~vv~~~g~~~~~----------~~~~~~-~v~~~~ 274 (404)
T 3h4t_A 221 SPPVYVGFGSGPA---PAEAARVAIEAVRAQ------------GRRVVLSSGWAGLG----------RIDEGD-DCLVVG 274 (404)
T ss_dssp SCCEEECCTTSCC---CTTHHHHHHHHHHHT------------TCCEEEECTTTTCC----------CSSCCT-TEEEES
T ss_pred CCeEEEECCCCCC---cHHHHHHHHHHHHhC------------CCEEEEEeCCcccc----------cccCCC-CEEEec
Confidence 4557777787652 234456666666432 23444555543221 123454 899999
Q ss_pred ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCC----chhhhccCCeEEEEcCC--CHHHHHHHHH
Q 001292 490 FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPI----IKEYVAEGAQVIFFQKD--NPEGLSRAFS 563 (1106)
Q Consensus 490 ~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gG----I~EiV~Dg~nG~LV~~~--D~eeLAeAI~ 563 (1106)
+... ..++..||++|.. +...++.||+++|+|+|+....+ ..+.+.+...|..++.. ++++|+++|.
T Consensus 275 ~~~~-~~ll~~~d~~v~~------gG~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~ 347 (404)
T 3h4t_A 275 EVNH-QVLFGRVAAVVHH------GGAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVESLSAALA 347 (404)
T ss_dssp SCCH-HHHGGGSSEEEEC------CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHH
T ss_pred CCCH-HHHHhhCcEEEEC------CcHHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHCCCEeccCcCCCCHHHHHHHHH
Confidence 8754 7889999999955 44578999999999999975543 34556555678877643 7999999999
Q ss_pred HHHhCcccHHHHHHHHHHHHH
Q 001292 564 LFISNGKLSKFARTVASAGRL 584 (1106)
Q Consensus 564 ~LLsDpelRk~r~~mGe~Are 584 (1106)
++++ ++. ++++.+.+..
T Consensus 348 ~ll~-~~~---~~~~~~~~~~ 364 (404)
T 3h4t_A 348 TALT-PGI---RARAAAVAGT 364 (404)
T ss_dssp HHTS-HHH---HHHHHHHHTT
T ss_pred HHhC-HHH---HHHHHHHHHH
Confidence 9998 765 3444444433
No 50
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=98.69 E-value=3.2e-06 Score=96.16 Aligned_cols=139 Identities=14% Similarity=0.012 Sum_probs=92.0
Q ss_pred cEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCC
Q 001292 411 EIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGF 490 (1106)
Q Consensus 411 ~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~ 490 (1106)
..++++.|+... ....+....++++++.+ +.++++++|.+... . ..+++ +|.+.++
T Consensus 238 ~~v~v~~Gs~~~-~~~~~~~~~~~~al~~~------------~~~~v~~~g~~~~~----~------~~~~~-~v~~~~~ 293 (416)
T 1rrv_A 238 PPVHIGFGSSSG-RGIADAAKVAVEAIRAQ------------GRRVILSRGWTELV----L------PDDRD-DCFAIDE 293 (416)
T ss_dssp CCEEECCTTCCS-HHHHHHHHHHHHHHHHT------------TCCEEEECTTTTCC----C------SCCCT-TEEEESS
T ss_pred CeEEEecCCCCc-cChHHHHHHHHHHHHHC------------CCeEEEEeCCcccc----c------cCCCC-CEEEecc
Confidence 456777786532 01122334444444321 23455666876421 1 24555 8999998
Q ss_pred hhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCC----CchhhhccCCeEEEEcC--CCHHHHHHHHHH
Q 001292 491 NGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYVAEGAQVIFFQK--DNPEGLSRAFSL 564 (1106)
Q Consensus 491 ~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~g----GI~EiV~Dg~nG~LV~~--~D~eeLAeAI~~ 564 (1106)
.. ...+|..||++|.- +...+++|||++|+|+|+.... .+.+.+.+...|..++. .++++|+++|.+
T Consensus 294 ~~-~~~ll~~~d~~v~~------~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ 366 (416)
T 1rrv_A 294 VN-FQALFRRVAAVIHH------GSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAALTT 366 (416)
T ss_dssp CC-HHHHGGGSSEEEEC------CCHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHHTSEEECSSSCCCHHHHHHHHHH
T ss_pred CC-hHHHhccCCEEEec------CChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHHCCCccCCCCCCCCHHHHHHHHHH
Confidence 75 57789999999963 5568999999999999997553 35566766678887764 478999999999
Q ss_pred HHhCcccHHHHHHHHHHHHH
Q 001292 565 FISNGKLSKFARTVASAGRL 584 (1106)
Q Consensus 565 LLsDpelRk~r~~mGe~Are 584 (1106)
+ +|++. ++++.+.+++
T Consensus 367 l-~~~~~---~~~~~~~~~~ 382 (416)
T 1rrv_A 367 V-LAPET---RARAEAVAGM 382 (416)
T ss_dssp H-TSHHH---HHHHHHHTTT
T ss_pred h-hCHHH---HHHHHHHHHH
Confidence 9 98876 3444444433
No 51
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=97.85 E-value=0.00045 Score=85.58 Aligned_cols=149 Identities=14% Similarity=0.057 Sum_probs=104.4
Q ss_pred HHHHcCC--CCCcEEEEEEcccCccccccCCHHHH-HHHHHHhHHHHHhhccC-CCCeEEEEEEcCCCCccHHH------
Q 001292 401 LRKENGF--LKDEIVVVVVGSSFFYNELSWDYAVA-MHDVGPLLIKYARRNSV-EGSFKFVFLCGNSTDGYNDA------ 470 (1106)
Q Consensus 401 LR~~lGL--~~d~~VIL~VGRl~~y~kg~Kg~dlL-LeA~k~Ll~k~aklk~~-~PdikfLIIVG~GperY~ee------ 470 (1106)
+++..|+ .++.++++++.|+.. .|++.++ +..+..+.. ....... -.+.+ +|++|.+...|...
T Consensus 538 l~~~~Gl~vdpd~l~~g~vkRl~e----YKRq~L~~l~~i~~~~~-i~~~~~~~~~p~q-~If~GKA~P~y~~aK~iIkl 611 (824)
T 2gj4_A 538 LEREYKVHINPNSLFDVQVKRIHE----YKRQLLNCLHVITLYNR-IKKEPNKFVVPRT-VMIGGKAAPGYHMAKMIIKL 611 (824)
T ss_dssp HHHHHCCCCCTTSEEEEEESCCCG----GGTHHHHHHHHHHHHHH-HHHCTTSCCCCEE-EEEECCCCTTCHHHHHHHHH
T ss_pred HHHHhCCCcCCCcceEeeeecchh----hcchhhHHHHHHHHHHH-HHhCCCCCCCCEE-EEEEEeCCHhHHHHHHHHHH
Confidence 4455665 568899999999888 7788887 777766542 1111110 01456 68899977667666
Q ss_pred HHHHHHHcCCC---CC--cEEEcC-Ch-hhHHHHHHHcCeEEEccC--CCCCCCcHHHHHHHHhCCCEEecCCCCchhhh
Q 001292 471 LQEVASRLGLL---EH--SVRHYG-FN-GDVNGVLLMADIVLYGSS--QVEQGFPSLIVRAMTFGIPVITPDFPIIKEYV 541 (1106)
Q Consensus 471 LkeLaeklGL~---d~--rV~flG-~~-eDL~~LyaaADVfV~PS~--~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV 541 (1106)
+.++++..+-. .+ +|.|+. +. .-...++++||+.++||. .| ..|..=+-||..|.+.|++--|...|+.
T Consensus 612 i~~va~~in~Dp~v~~~lKVvFl~nYdvslA~~I~~gaDv~l~~S~ag~E--AsGTs~MKamlNGaLtigtlDGanvEi~ 689 (824)
T 2gj4_A 612 ITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTE--ASGTGNMKFMLNGALTIGTMDGANVEMA 689 (824)
T ss_dssp HHHHHHHHTTCTTTGGGEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSC--SCCSHHHHHHHTTCEEEECSCTTHHHHH
T ss_pred HHHHHHHhccCcccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCC--CCchHHHHHHHcCceEEEEecCccchhh
Confidence 66776654221 12 466665 44 456789999999999999 76 9999999999999999998767666655
Q ss_pred c--cCCeEEEEcCCCHHHH
Q 001292 542 A--EGAQVIFFQKDNPEGL 558 (1106)
Q Consensus 542 ~--Dg~nG~LV~~~D~eeL 558 (1106)
+ ..+||++|... ++++
T Consensus 690 e~vG~~Ngf~FG~~-~~ev 707 (824)
T 2gj4_A 690 EEAGEENFFIFGMR-VEDV 707 (824)
T ss_dssp HHHCGGGSEECSCC-HHHH
T ss_pred hccCCCCEEEeCCc-HHHH
Confidence 3 34689988753 5555
No 52
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=97.82 E-value=0.00013 Score=90.11 Aligned_cols=189 Identities=11% Similarity=0.028 Sum_probs=125.1
Q ss_pred HHHcCC--CCCcEEEEEEcccCccccccCCHHH-HHHHHHHhHHHHHhhcc-CCCCeEEEEEEcCCCCccHHH------H
Q 001292 402 RKENGF--LKDEIVVVVVGSSFFYNELSWDYAV-AMHDVGPLLIKYARRNS-VEGSFKFVFLCGNSTDGYNDA------L 471 (1106)
Q Consensus 402 R~~lGL--~~d~~VIL~VGRl~~y~kg~Kg~dl-LLeA~k~Ll~k~aklk~-~~PdikfLIIVG~GperY~ee------L 471 (1106)
++.+|+ .++.+++++|.|+.. .|++++ ++..+..+.. ...... ...+++ +|++|.+...|... +
T Consensus 515 ~~~~Gl~vdpd~l~~~~vkRl~e----YKRq~Lnil~ii~~~~~-i~~~~~~~~~p~q-~If~GKA~P~y~~aK~iIk~i 588 (796)
T 1l5w_A 515 KVRTGIEINPQAIFDIQIKRLHE----YKRQHLNLLHILALYKE-IRENPQADRVPRV-FLFGAKAAPGYYLAKNIIFAI 588 (796)
T ss_dssp HHHHCCCCCTTSEEEEEESCCCG----GGTHHHHHHHHHHHHHH-HHTCTTCCCCCEE-EEEECCCCTTCHHHHHHHHHH
T ss_pred HHHhCCCcCCCcceEeeeecchh----hcccCEeHHHHHHHHHH-HhcCCCCCCCCeE-EEEEecCChhHHHHHHHHHHH
Confidence 556675 468899999999888 788898 8888876652 111100 002466 68899977666666 5
Q ss_pred HHHHHHc----CCCCC--cEEEcC-Ch-hhHHHHHHHcCeEEEccC--CCCCCCcHHHHHHHHhCCCEEecCCCCchhhh
Q 001292 472 QEVASRL----GLLEH--SVRHYG-FN-GDVNGVLLMADIVLYGSS--QVEQGFPSLIVRAMTFGIPVITPDFPIIKEYV 541 (1106)
Q Consensus 472 keLaekl----GL~d~--rV~flG-~~-eDL~~LyaaADVfV~PS~--~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV 541 (1106)
..+++.. .++ + +|.|+. +. .-...++++||+.++||. .| ..|..=+-||..|.+.|.+--|...|+.
T Consensus 589 ~~va~~in~Dp~~~-~~lKVvfl~nY~vslA~~I~~gaDv~l~~S~a~~E--AsGTs~MKam~NGaL~iGtLDGanvEi~ 665 (796)
T 1l5w_A 589 NKVADVINNDPLVG-DKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKE--ASGTGNMKLALNGALTVGTLDGANVEIA 665 (796)
T ss_dssp HHHHHHHHTCTTTG-GGEEEEECSSCCHHHHHHHGGGCSEEEECCCTTTC--CCCSHHHHHHHTTCEEEECSCTTHHHHH
T ss_pred HHHHHHhccccccC-CceEEEEECCCCHHHHHHHhhhcceeecCCCCCCC--CCchHHHHHHHcCCeeecCcCCeeeehh
Confidence 5555411 122 3 577775 44 456799999999999999 76 9999999999999999988777777765
Q ss_pred cc--CCeEEEEcCCCHHHHHHHH-------HHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhc
Q 001292 542 AE--GAQVIFFQKDNPEGLSRAF-------SLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILENVLN 607 (1106)
Q Consensus 542 ~D--g~nG~LV~~~D~eeLAeAI-------~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLyeslLk 607 (1106)
++ .+||++|-. +++++.+.- ...-.+|++ +++-.++ ....|+......|..||++++.
T Consensus 666 e~vG~~NgF~FG~-~~~ev~~l~~~~y~a~~~y~~~~~~----~~vvd~~---~~g~fs~~~~~~y~~Ly~~L~~ 732 (796)
T 1l5w_A 666 EKVGEENIFIFGH-TVEQVKAILAKGYDPVKWRKKDKVL----DAVLKEL---ESGKYSDGDKHAFDQMLHSIGK 732 (796)
T ss_dssp HHHCGGGSEECSC-CHHHHHHHHHHCCCHHHHHHHCHHH----HHHHHHH---HHTTTTTTCTTTTHHHHHHTST
T ss_pred hccCCCcEEEecC-CHHHHHHHHHcccCHHHHhhcCHHH----HHHHHHH---HcCCCCCCcHHHHHHHHHHHhc
Confidence 44 359999975 777766322 222234433 2222222 2344543333678999988764
No 53
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=97.79 E-value=0.00046 Score=76.14 Aligned_cols=66 Identities=12% Similarity=0.104 Sum_probs=53.7
Q ss_pred EEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecC
Q 001292 456 FVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPD 533 (1106)
Q Consensus 456 fLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD 533 (1106)
+.+++|.+... .+++++.+++ .+ +|.+.++.+++.++|+.||++|.+ + |.++.|++++|+|.|.-.
T Consensus 186 i~vv~G~~~~~-~~~l~~~~~~--~~--~v~v~~~~~~m~~~m~~aDlvI~~------g-G~T~~E~~~~g~P~i~ip 251 (282)
T 3hbm_A 186 ISIATSSSNPN-LKKLQKFAKL--HN--NIRLFIDHENIAKLMNESNKLIIS------A-SSLVNEALLLKANFKAIC 251 (282)
T ss_dssp EEEEECTTCTT-HHHHHHHHHT--CS--SEEEEESCSCHHHHHHTEEEEEEE------S-SHHHHHHHHTTCCEEEEC
T ss_pred EEEEECCCchH-HHHHHHHHhh--CC--CEEEEeCHHHHHHHHHHCCEEEEC------C-cHHHHHHHHcCCCEEEEe
Confidence 45788887653 6788777763 22 699999999999999999999974 2 489999999999999864
No 54
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=97.77 E-value=0.00023 Score=87.85 Aligned_cols=190 Identities=13% Similarity=0.091 Sum_probs=124.8
Q ss_pred HHHcCC--CCCcEEEEEEcccCccccccCCHHH-HHHHHHHhHHHHHhhcc-CCCCeEEEEEEcCCCCccHHH------H
Q 001292 402 RKENGF--LKDEIVVVVVGSSFFYNELSWDYAV-AMHDVGPLLIKYARRNS-VEGSFKFVFLCGNSTDGYNDA------L 471 (1106)
Q Consensus 402 R~~lGL--~~d~~VIL~VGRl~~y~kg~Kg~dl-LLeA~k~Ll~k~aklk~-~~PdikfLIIVG~GperY~ee------L 471 (1106)
+++.|+ .++.+++++|.|+.. .|++++ ++..+..+.. ...... ...+++ +|++|.+...|... +
T Consensus 505 ~~~~Gl~vdpd~l~~~~vkRlhe----YKRq~Lnil~ii~~~~~-i~~~~~~~~~p~q-~If~GKA~P~y~~aK~iIk~i 578 (796)
T 2c4m_A 505 LERQGIEIDPESIFDVQIKRLHE----YKRQLMNALYVLDLYFR-IKEDGLTDIPART-VIFGAKAAPGYVRAKAIIKLI 578 (796)
T ss_dssp HHHHCCCCCTTSEEEEEECCCCG----GGTHHHHHHHHHHHHHH-HHTSCCCSSCCEE-EEEECCCCTTCHHHHHHHHHH
T ss_pred HHHhCCCCCCCCcEEEEeecchh----hcccCEeHHHHHHHHHH-HhhCCCCCCCCeE-EEEEecCCHhHHHHHHHHHHH
Confidence 555665 568899999999888 788898 8888876652 111100 002456 68899977666666 5
Q ss_pred HHHHHHc----CCCCC--cEEEcC-Ch-hhHHHHHHHcCeEEEccC--CCCCCCcHHHHHHHHhCCCEEecCCCCchhhh
Q 001292 472 QEVASRL----GLLEH--SVRHYG-FN-GDVNGVLLMADIVLYGSS--QVEQGFPSLIVRAMTFGIPVITPDFPIIKEYV 541 (1106)
Q Consensus 472 keLaekl----GL~d~--rV~flG-~~-eDL~~LyaaADVfV~PS~--~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV 541 (1106)
..+++.. .++ + +|.|+. +. .-...++++||+.++||. .| ..|..=+-||..|.+.|.+--|...|+.
T Consensus 579 ~~va~~in~dp~~~-~~lKVvFl~nY~vslA~~I~~gaDv~l~~S~a~~E--AsGTs~MKam~NGaL~iGtLDGanvEi~ 655 (796)
T 2c4m_A 579 NSIADLVNNDPEVS-PLLKVVFVENYNVSPAEHILPASDVSEQISTAGKE--ASGTSNMKFMMNGALTLGTMDGANVEIV 655 (796)
T ss_dssp HHHHHHHHTCTTTT-TTEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSC--SCCHHHHHHHHTTCEEEEESSTHHHHHH
T ss_pred HHHHHHhccccccC-CceEEEEECCCCHHHHHHHhhhcceeecCCCCCCC--CCchHHHHHHHcCCeEEeccCCeEeehh
Confidence 5555411 222 2 466665 54 456799999999999999 76 9999999999999999988777777765
Q ss_pred cc--CCeEEEEcC--CCHHHHHHH---HHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhc
Q 001292 542 AE--GAQVIFFQK--DNPEGLSRA---FSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILENVLN 607 (1106)
Q Consensus 542 ~D--g~nG~LV~~--~D~eeLAeA---I~~LLsDpelRk~r~~mGe~Are~ake~fsee~v~~Y~eLyeslLk 607 (1106)
++ .+||++|-. .++.++... ....-.+|++ +++-.++ ....|+......|..+|+++++
T Consensus 656 e~vG~~NgF~FG~~~~ev~~l~~~y~a~~~y~~~~~~----~~vvd~~---~~g~fs~~~~~~y~~Ly~~L~~ 721 (796)
T 2c4m_A 656 DSVGEENAYIFGARVEELPALRESYKPYELYETVPGL----KRALDAL---DNGTLNDNNSGLFYDLKHSLIH 721 (796)
T ss_dssp HHHCGGGSEEESCCTTTHHHHHHTCCHHHHHHHSTTH----HHHHHTT---TSSSSCCTTCCHHHHHHHHHHS
T ss_pred hhcCCCcEEEecCchhhHHHHHHhhChHHHhhcCHHH----HHHHHHH---HcCCCCCCCHHHHHHHHHHHHh
Confidence 43 359999965 666666543 2233344543 2222221 1234443222679999998874
No 55
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=97.05 E-value=0.0043 Score=72.72 Aligned_cols=195 Identities=10% Similarity=0.052 Sum_probs=107.1
Q ss_pred HHHHHHhccccEEEecCCChhhh-----hcCCCCCCEEEeCCCCCCcccccccCcchhHHHHHHHcCC-CCCcEEEEEEc
Q 001292 345 SYWKSVFSRVNVIVFPDYTLPML-----YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGF-LKDEIVVVVVG 418 (1106)
Q Consensus 345 s~~~~~l~~AD~VIa~S~~~~~~-----~~gi~~~KI~VIpN~GVDl~~~e~F~ps~s~~~LR~~lGL-~~d~~VIL~VG 418 (1106)
......+..++.+++.+....+. ..... .++..|+. +-........+ ....+.+-++. ++...+.+..|
T Consensus 207 ~~~~~~~~~~~~vl~ns~~eLE~~~~~~~~~~~-~~v~~vGP--l~~~~~~~~~~--~~~~~~~wLd~~~~~~vVyvsfG 281 (454)
T 3hbf_A 207 HKMGLELPRANAVAINSFATIHPLIENELNSKF-KLLLNVGP--FNLTTPQRKVS--DEHGCLEWLDQHENSSVVYISFG 281 (454)
T ss_dssp HHHHHHGGGSSCEEESSCGGGCHHHHHHHHTTS-SCEEECCC--HHHHSCCSCCC--CTTCHHHHHHTSCTTCEEEEECC
T ss_pred HHHHHhhccCCEEEECChhHhCHHHHHHHHhcC-CCEEEECC--ccccccccccc--chHHHHHHHhcCCCCceEEEecC
Confidence 33344577889998888654332 11222 35666654 21100000000 01112222322 33455667777
Q ss_pred ccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHH-HHHHHHcCCCCCcEEEcCChhhHHHH
Q 001292 419 SSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDAL-QEVASRLGLLEHSVRHYGFNGDVNGV 497 (1106)
Q Consensus 419 Rl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeL-keLaeklGL~d~rV~flG~~eDL~~L 497 (1106)
+... ...+.+.+.+..| ... +.+||+.+|.... +.+ ..+.++ ..+ ++.+.++..+ ..+
T Consensus 282 S~~~-----~~~~~~~el~~~l----~~~-----~~~flw~~~~~~~---~~lp~~~~~~--~~~-~~~vv~w~Pq-~~v 340 (454)
T 3hbf_A 282 SVVT-----PPPHELTALAESL----EEC-----GFPFIWSFRGDPK---EKLPKGFLER--TKT-KGKIVAWAPQ-VEI 340 (454)
T ss_dssp SSCC-----CCHHHHHHHHHHH----HHH-----CCCEEEECCSCHH---HHSCTTHHHH--TTT-TEEEESSCCH-HHH
T ss_pred CCCc-----CCHHHHHHHHHHH----HhC-----CCeEEEEeCCcch---hcCCHhHHhh--cCC-ceEEEeeCCH-HHH
Confidence 6543 1223222222222 111 2346777776421 111 111121 233 7888897765 588
Q ss_pred HHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCC----CchhhhccC-CeEEEEcC--CCHHHHHHHHHHHHhCc
Q 001292 498 LLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYVAEG-AQVIFFQK--DNPEGLSRAFSLFISNG 569 (1106)
Q Consensus 498 yaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~g----GI~EiV~Dg-~nG~LV~~--~D~eeLAeAI~~LLsDp 569 (1106)
|+.+++.++-+. ++-++++||+++|+|+|+-... .....+.+. ..|..++. -+.++++++|.++++++
T Consensus 341 L~h~~v~~fvtH----~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~Gv~l~~~~~~~~~l~~av~~ll~~~ 415 (454)
T 3hbf_A 341 LKHSSVGVFLTH----SGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKESIKKALELTMSSE 415 (454)
T ss_dssp HHSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSEEECGGGSCCHHHHHHHHHHHHSSH
T ss_pred HhhcCcCeEEec----CCcchHHHHHHcCCCEecCcccccHHHHHHHHHHhhCeeEEecCCCCCHHHHHHHHHHHHCCC
Confidence 999995444332 5678999999999999996443 345566664 67877754 47899999999999886
No 56
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=96.89 E-value=0.0099 Score=69.40 Aligned_cols=122 Identities=14% Similarity=0.105 Sum_probs=79.0
Q ss_pred eEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHHhCCCEEe
Q 001292 454 FKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMTFGIPVIT 531 (1106)
Q Consensus 454 ikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA~G~PVIA 531 (1106)
.+||+++|.+.+...+.+.+.... .+ ++.+.++..++ .+|+ ++|+||.- ++.++++||+++|+|+|+
T Consensus 307 ~~~l~~~~~~~~~l~~~~~~~~~~---~~-~~~v~~w~pq~-~vL~h~~~~~fvth------~G~~s~~Eal~~GvP~i~ 375 (463)
T 2acv_A 307 VRFLWSNSAEKKVFPEGFLEWMEL---EG-KGMICGWAPQV-EVLAHKAIGGFVSH------CGWNSILESMWFGVPILT 375 (463)
T ss_dssp CEEEEECCCCGGGSCTTHHHHHHH---HC-SEEEESSCCHH-HHHHSTTEEEEEEC------CCHHHHHHHHHTTCCEEE
T ss_pred CcEEEEECCCcccCChhHHHhhcc---CC-CEEEEccCCHH-HHhCCCccCeEEec------CCchhHHHHHHcCCCeee
Confidence 467788886411111223222210 12 68888877665 5675 68888843 667999999999999999
Q ss_pred cCCC----Cchhh-hccCCeEEEE-c-------CCCHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHHH
Q 001292 532 PDFP----IIKEY-VAEGAQVIFF-Q-------KDNPEGLSRAFSLFIS-NGKLSKFARTVASAGRLHA 586 (1106)
Q Consensus 532 SD~g----GI~Ei-V~Dg~nG~LV-~-------~~D~eeLAeAI~~LLs-DpelRk~r~~mGe~Are~a 586 (1106)
-... ..... +..-..|+.+ . .-+.++++++|.++++ +++.++.++++++.+++-+
T Consensus 376 ~P~~~dQ~~Na~~lv~~~g~g~~l~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~r~~a~~l~~~~~~a~ 444 (463)
T 2acv_A 376 WPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAV 444 (463)
T ss_dssp CCCSTTHHHHHHHHHHTSCCEEESCSSCCTTCCCCCHHHHHHHHHHHTCTTCTHHHHHHHHHHHHHHHT
T ss_pred ccchhhhHHHHHHHHHHcCeEEEEecccCCCCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 7543 34455 4565678777 2 2378999999999997 4666655666666555543
No 57
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=96.86 E-value=0.004 Score=72.59 Aligned_cols=80 Identities=15% Similarity=0.092 Sum_probs=61.8
Q ss_pred cEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCC----CchhhhccC-CeEEEEcC--CC
Q 001292 484 SVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYVAEG-AQVIFFQK--DN 554 (1106)
Q Consensus 484 rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~g----GI~EiV~Dg-~nG~LV~~--~D 554 (1106)
++.+.++..+. .+|+ ++|+||.- ++.++++||+++|+|+|+-... .....+.+. ..|..++. -+
T Consensus 326 ~~~v~~w~pq~-~vL~h~~~~~fvth------~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~g~~l~~~~~~ 398 (456)
T 2c1x_A 326 YGMVVPWAPQA-EVLAHEAVGAFVTH------CGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFT 398 (456)
T ss_dssp TEEEESCCCHH-HHHTSTTEEEEEEC------CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECGGGSCC
T ss_pred ceEEecCCCHH-HHhcCCcCCEEEec------CCcchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCeEEEecCCCcC
Confidence 78888877664 6788 77888843 6679999999999999997543 345566665 67877753 36
Q ss_pred HHHHHHHHHHHHhCcc
Q 001292 555 PEGLSRAFSLFISNGK 570 (1106)
Q Consensus 555 ~eeLAeAI~~LLsDpe 570 (1106)
.++++++|.++++|++
T Consensus 399 ~~~l~~~i~~ll~~~~ 414 (456)
T 2c1x_A 399 KSGLMSCFDQILSQEK 414 (456)
T ss_dssp HHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHHHCCCc
Confidence 8999999999999874
No 58
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=96.61 E-value=0.023 Score=66.45 Aligned_cols=80 Identities=15% Similarity=0.058 Sum_probs=59.9
Q ss_pred cEEEcCChhhHHHHHHHcCe--EEEccCCCCCCCcHHHHHHHHhCCCEEecCCC----Cchhhhc-cCCeEEEEcC-CCH
Q 001292 484 SVRHYGFNGDVNGVLLMADI--VLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYVA-EGAQVIFFQK-DNP 555 (1106)
Q Consensus 484 rV~flG~~eDL~~LyaaADV--fV~PS~~EeEGFGlvLLEAMA~G~PVIASD~g----GI~EiV~-Dg~nG~LV~~-~D~ 555 (1106)
++.+.++..++ .+|+.+++ ||.- ++.++++||+++|+|+|+-... .....+. .-..|+.++. -+.
T Consensus 354 ~~~v~~~~pq~-~~L~h~~~~~~vth------~G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~ 426 (482)
T 2pq6_A 354 RGLIASWCPQD-KVLNHPSIGGFLTH------CGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNVKR 426 (482)
T ss_dssp TEEEESCCCHH-HHHTSTTEEEEEEC------CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECCSSCCH
T ss_pred CEEEEeecCHH-HHhcCCCCCEEEec------CCcchHHHHHHcCCCEEecCcccchHHHHHHHHHHhCEEEEECCCCCH
Confidence 78888977665 58877666 5532 6679999999999999997553 2444453 4457776652 378
Q ss_pred HHHHHHHHHHHhCcc
Q 001292 556 EGLSRAFSLFISNGK 570 (1106)
Q Consensus 556 eeLAeAI~~LLsDpe 570 (1106)
++++++|.++++|++
T Consensus 427 ~~l~~~i~~ll~~~~ 441 (482)
T 2pq6_A 427 EELAKLINEVIAGDK 441 (482)
T ss_dssp HHHHHHHHHHHTSHH
T ss_pred HHHHHHHHHHHcCCc
Confidence 999999999999885
No 59
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=96.57 E-value=0.27 Score=55.11 Aligned_cols=110 Identities=14% Similarity=0.274 Sum_probs=67.6
Q ss_pred HHHHHcCCCCCc-EEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHHHHc
Q 001292 400 QLRKENGFLKDE-IVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRL 478 (1106)
Q Consensus 400 ~LR~~lGL~~d~-~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLaekl 478 (1106)
.+..+.|+.++. .+++..|.....+ ....+...+.++.|.++ +++ ++++|...+. +..+++++..
T Consensus 174 ~~l~~~g~~~~~~~i~i~pga~~~~k--~wp~~~~~~l~~~l~~~---------g~~-vvl~g~~~e~--~~~~~i~~~~ 239 (349)
T 3tov_A 174 EFYSSHGLTDTDILIGFNIGSAVPEK--RWPAERFAHVADYFGRL---------GYK-TVFFGGPMDL--EMVQPVVEQM 239 (349)
T ss_dssp HHHHHTTCCTTCCEEEEECCCSSGGG--CCCHHHHHHHHHHHHHH---------TCE-EEECCCTTTH--HHHHHHHHTC
T ss_pred HHHHHcCCCCCCCEEEEeCCCCCccC--CCCHHHHHHHHHHHHhC---------CCe-EEEEeCcchH--HHHHHHHHhc
Confidence 344566776544 4556667544321 33445666666555431 234 3456654443 6667776655
Q ss_pred CCCCCcEEEcC--ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec
Q 001292 479 GLLEHSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP 532 (1106)
Q Consensus 479 GL~d~rV~flG--~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS 532 (1106)
+-. .+.+.| ...++..+++.||++|..- + |..-+ |.|+|+|+|+-
T Consensus 240 ~~~--~~~l~g~~sl~e~~ali~~a~~~i~~D-----s-G~~Hl-Aaa~g~P~v~l 286 (349)
T 3tov_A 240 ETK--PIVATGKFQLGPLAAAMNRCNLLITND-----S-GPMHV-GISQGVPIVAL 286 (349)
T ss_dssp SSC--CEECTTCCCHHHHHHHHHTCSEEEEES-----S-HHHHH-HHTTTCCEEEE
T ss_pred ccc--cEEeeCCCCHHHHHHHHHhCCEEEECC-----C-CHHHH-HHhcCCCEEEE
Confidence 422 467777 4578999999999999652 2 34444 99999999986
No 60
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=96.44 E-value=0.031 Score=65.52 Aligned_cols=95 Identities=9% Similarity=-0.015 Sum_probs=64.9
Q ss_pred EEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCC----Cchhhh-ccCCeEEEEcC-----CC
Q 001292 485 VRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYV-AEGAQVIFFQK-----DN 554 (1106)
Q Consensus 485 V~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~g----GI~EiV-~Dg~nG~LV~~-----~D 554 (1106)
+++.++.... .+|+.+++.++-+. +.-++++||+++|+|+|+-... .....+ ..-..|+.++. -+
T Consensus 341 ~~v~~w~Pq~-~vL~h~~v~~fvtH----gG~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~~G~g~~l~~~~~~~~~ 415 (480)
T 2vch_A 341 FVIPFWAPQA-QVLAHPSTGGFLTH----CGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVR 415 (480)
T ss_dssp EEEESCCCHH-HHHHSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECCCCCTTSCCC
T ss_pred EEEeCccCHH-HHhCCCCcCeEEec----ccchhHHHHHHcCCCEEeccccccchHHHHHHHHHhCeEEEeecccCCccC
Confidence 4455566554 89999996333332 6678999999999999997543 344554 45567776653 37
Q ss_pred HHHHHHHHHHHHh---CcccHHHHHHHHHHHHH
Q 001292 555 PEGLSRAFSLFIS---NGKLSKFARTVASAGRL 584 (1106)
Q Consensus 555 ~eeLAeAI~~LLs---DpelRk~r~~mGe~Are 584 (1106)
.++++++|.++++ +++.++.++++++.+++
T Consensus 416 ~~~l~~av~~vl~~~~~~~~r~~a~~l~~~~~~ 448 (480)
T 2vch_A 416 REEVARVVKGLMEGEEGKGVRNKMKELKEAACR 448 (480)
T ss_dssp HHHHHHHHHHHHTSTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence 8999999999998 55555555555555444
No 61
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=95.96 E-value=0.0057 Score=65.38 Aligned_cols=73 Identities=16% Similarity=0.169 Sum_probs=53.0
Q ss_pred cEEEcCChhhHHHHHH-HcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCC--------chhhhccCCeEEEEcCCC
Q 001292 484 SVRHYGFNGDVNGVLL-MADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPI--------IKEYVAEGAQVIFFQKDN 554 (1106)
Q Consensus 484 rV~flG~~eDL~~Lya-aADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gG--------I~EiV~Dg~nG~LV~~~D 554 (1106)
+|...++.+++..+|+ .||++|.- +...+++|++++|+|.|.-..+. ..+.+.+...++++ +
T Consensus 115 ~v~v~~f~~~m~~~l~~~AdlvIsh------aGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G~~~~~---~ 185 (224)
T 2jzc_A 115 KVIGFDFSTKMQSIIRDYSDLVISH------AGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSC---A 185 (224)
T ss_dssp EEEECCSSSSHHHHHHHHCSCEEES------SCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHSCCCEE---C
T ss_pred eEEEeeccchHHHHHHhcCCEEEEC------CcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCCCEEEc---C
Confidence 5777889899999999 99999954 56789999999999999865542 13334333344444 4
Q ss_pred HHHHHHHHHHH
Q 001292 555 PEGLSRAFSLF 565 (1106)
Q Consensus 555 ~eeLAeAI~~L 565 (1106)
++.|+++|.++
T Consensus 186 ~~~L~~~i~~l 196 (224)
T 2jzc_A 186 PTETGLIAGLR 196 (224)
T ss_dssp SCTTTHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56677777766
No 62
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=95.37 E-value=0.095 Score=64.47 Aligned_cols=224 Identities=11% Similarity=0.077 Sum_probs=126.3
Q ss_pred CCCcEEEEEcCCcccccchhh-----hhhhHHhHHHHHHHHhccccEEEecCCChhhh---hcCCCCCCEEEeCCCCCCc
Q 001292 315 HSIPLVWIIQEDSLANRLPVY-----VERGFQNLLSYWKSVFSRVNVIVFPDYTLPML---YSVLDAGNFFVIPGSPADV 386 (1106)
Q Consensus 315 ~gIPVI~tIHna~Ls~r~~~Y-----~~~gleklis~~~~~l~~AD~VIa~S~~~~~~---~~gi~~~KI~VIpN~GVDl 386 (1106)
.+..+|-+.|+.+++.--... +..........+.......|++++++...... ..+++++++.+++..-.|.
T Consensus 435 ~~~~~iq~wHG~~lK~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~s~~~~~~~~~~f~~~~~~i~~~G~PR~D~ 514 (729)
T 3l7i_A 435 ENQTYIQTWHGTPLKRLANDMKVVRMPGTTTPKYKRNFNRETSRWDYLISPNRYSTEIFRSAFWMDEERILEIGYPRNDV 514 (729)
T ss_dssp TTCEEEECCSSCCSBCCGGGCSCCCCTTCCHHHHHHHHHHHHTTCSEEEESSHHHHHHHHHHTCCCGGGEEESCCGGGHH
T ss_pred CCcEEEECCCCCchhhccccccccccccccCHHHHHHHHHhhccCCEEEeCCHHHHHHHHHHhCCCcceEEEcCCCchHH
Confidence 456688888997654321110 00011222233334466789999998665444 3455556787776544554
Q ss_pred ccccccCc---chhHHHHHHHcCCCCCcEEEEEEcccCccc---ccc--CCHHHHHHHHHHhHHHHHhhccCCCCeEEEE
Q 001292 387 WAVEAYSK---SHEKYQLRKENGFLKDEIVVVVVGSSFFYN---ELS--WDYAVAMHDVGPLLIKYARRNSVEGSFKFVF 458 (1106)
Q Consensus 387 ~~~e~F~p---s~s~~~LR~~lGL~~d~~VIL~VGRl~~y~---kg~--Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLI 458 (1106)
.+.. ......+++.+++++++.+|+++-...... .+. .+...-++.+.+.+ . +++ .+
T Consensus 515 ----l~~~~~~~~~~~~~~~~~~~~~~kk~ILyaPT~r~~~~~~~~~~~~~~~~~~~~l~~~l-------~--~~~--~l 579 (729)
T 3l7i_A 515 ----LVNRANDQEYLDEIRTHLNLPSDKKVIMYAPTWRDDEFVSKGKYLFELKIDLDNLYKEL-------G--DDY--VI 579 (729)
T ss_dssp ----HHHSTTCHHHHHHHHHHTTCCSSCEEEEECCCCCGGGCCGGGSSCCCCTTCHHHHHHHH-------T--TTE--EE
T ss_pred ----HhcccchHHHHHHHHHHhCCCCCCeEEEEeeeeeCCccccccccccchhhHHHHHHHHc-------C--CCe--EE
Confidence 3311 123567889999999999999996432210 000 00111122222211 1 344 35
Q ss_pred EEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecC--CC-
Q 001292 459 LCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPD--FP- 535 (1106)
Q Consensus 459 IVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD--~g- 535 (1106)
++=-||. +.......++.+ .+.......++.++|..||++|. -++-++.|++.+++|||... ..
T Consensus 580 i~r~Hp~-----~~~~~~~~~~~~-~~~~~~~~~di~~ll~~aD~lIT-------DySSv~fD~~~l~kPiif~~~D~~~ 646 (729)
T 3l7i_A 580 LLRMHYL-----ISNALDLSGYEN-FAIDVSNYNDVSELFLISDCLIT-------DYSSVMFDYGILKRPQFFFAYDIDK 646 (729)
T ss_dssp EECCCHH-----HHTTCCCTTCTT-TEEECTTCSCHHHHHHTCSEEEE-------SSCTHHHHHGGGCCCEEEECTTTTT
T ss_pred EEecCcc-----hhccccccccCC-cEEeCCCCcCHHHHHHHhCEEEe-------echHHHHhHHhhCCCEEEecCCHHH
Confidence 5555652 111111123344 66666666799999999999883 34678999999999999872 11
Q ss_pred ------CchhhhccCCeEEEEcCCCHHHHHHHHHHHHhC
Q 001292 536 ------IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISN 568 (1106)
Q Consensus 536 ------GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsD 568 (1106)
|.---+.+..-|.++ .|.++|.++|......
T Consensus 647 Y~~~~rg~y~d~~~~~pg~~~--~~~~eL~~~i~~~~~~ 683 (729)
T 3l7i_A 647 YDKGLRGFYMNYMEDLPGPIY--TEPYGLAKELKNLDKV 683 (729)
T ss_dssp TTSSCCSBSSCTTSSSSSCEE--SSHHHHHHHHTTHHHH
T ss_pred HhhccCCcccChhHhCCCCeE--CCHHHHHHHHhhhhcc
Confidence 111011112234444 5899999999887653
No 63
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=94.37 E-value=0.21 Score=54.88 Aligned_cols=114 Identities=14% Similarity=0.112 Sum_probs=66.5
Q ss_pred HHHHHHHcCCCC-CcEEEEEEcc-cCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEEcCCCCccHHHHHHHH
Q 001292 398 KYQLRKENGFLK-DEIVVVVVGS-SFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVA 475 (1106)
Q Consensus 398 ~~~LR~~lGL~~-d~~VIL~VGR-l~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIVG~GperY~eeLkeLa 475 (1106)
...+++.+++.. +..+++..|. ....+ ....+.+++.++.|.+ .+++ ++++|...+. +..+++.
T Consensus 167 ~~~~~~~~~~~~~~~~i~l~pga~~~~~k--~wp~~~~~~l~~~L~~---------~~~~-vvl~g~~~e~--~~~~~i~ 232 (348)
T 1psw_A 167 KSYTCNQFSLSSERPMIGFCPGAEFGPAK--RWPHYHYAELAKQLID---------EGYQ-VVLFGSAKDH--EAGNEIL 232 (348)
T ss_dssp HHHHHHHTTCCSSSCEEEEECCCTTCGGG--SCCHHHHHHHHHHHHH---------TTCE-EEECCCGGGH--HHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCccccC--CCCHHHHHHHHHHHHH---------CCCe-EEEEeChhhH--HHHHHHH
Confidence 455677788763 4456666675 22211 2334566666655542 1345 3555654443 5555555
Q ss_pred HHcCC--CCCcEEEcC--ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec
Q 001292 476 SRLGL--LEHSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP 532 (1106)
Q Consensus 476 eklGL--~d~rV~flG--~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS 532 (1106)
+..+- ....+.+.| ...++..+++.||++|...+ |..-+ |+|+|+|+|+-
T Consensus 233 ~~~~~~~~~~~~~l~g~~sl~e~~ali~~a~l~I~~Ds------g~~Hl-Aaa~g~P~v~l 286 (348)
T 1psw_A 233 AALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTNDS------GLMHV-AAALNRPLVAL 286 (348)
T ss_dssp TTSCHHHHTTEEECTTTSCHHHHHHHHHTSSEEEEESS------HHHHH-HHHTTCCEEEE
T ss_pred HhhhhccccceEeccCcCCHHHHHHHHHhCCEEEecCC------HHHHH-HHHcCCCEEEE
Confidence 43220 111356677 35899999999999997632 23333 99999999985
No 64
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=88.32 E-value=1.5 Score=47.93 Aligned_cols=139 Identities=14% Similarity=0.054 Sum_probs=74.5
Q ss_pred cCCCCCcEEEEEEcccCccccccCCHHHHHHHHHHhHHHHHhhccCCCCeEEEEEE-cCCCCccHHHHHHHHHHcCCCCC
Q 001292 405 NGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLC-GNSTDGYNDALQEVASRLGLLEH 483 (1106)
Q Consensus 405 lGL~~d~~VIL~VGRl~~y~kg~Kg~dlLLeA~k~Ll~k~aklk~~~PdikfLIIV-G~GperY~eeLkeLaeklGL~d~ 483 (1106)
.+..++..+++..|.....+ ....+...+.++.|. . .++++ ++. |...+. +..+++++. ++
T Consensus 173 ~~~~~~~~i~l~pga~~~~k--~wp~~~~~~l~~~L~-------~--~~~~v-vl~~g~~~e~--~~~~~i~~~--~~-- 234 (326)
T 2gt1_A 173 LPTDAGEYAVFLHATTRDDK--HWPEEHWRELIGLLA-------D--SGIRI-KLPWGAPHEE--ERAKRLAEG--FA-- 234 (326)
T ss_dssp CCTTTTSEEEEECCCSSGGG--SCCHHHHHHHHHHTT-------T--TCCEE-EECCSSHHHH--HHHHHHHTT--CT--
T ss_pred ccccCCCEEEEEeCCCCccc--cCCHHHHHHHHHHHH-------H--CCCcE-EEecCCHHHH--HHHHHHHhh--CC--
Confidence 34444566777777544321 233445555554332 1 24553 444 532222 444555442 33
Q ss_pred cEEEcC--ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhc-cCCeEEEEc-------CC
Q 001292 484 SVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVA-EGAQVIFFQ-------KD 553 (1106)
Q Consensus 484 rV~flG--~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~-Dg~nG~LV~-------~~ 553 (1106)
.+.+.| ...++..+++.||++|..- + |..=+ |.|+|+|+|+-=-+..+.... -+.....+. .-
T Consensus 235 ~~~l~g~~sl~el~ali~~a~l~I~~D-----S-G~~Hl-Aaa~g~P~v~lfg~t~p~~~~P~~~~~~~~~~~~~cm~~I 307 (326)
T 2gt1_A 235 YVEVLPKMSLEGVARVLAGAKFVVSVD-----T-GLSHL-TAALDRPNITVYGPTDPGLIGGYGKNQMVCRAPGNELSQL 307 (326)
T ss_dssp TEEECCCCCHHHHHHHHHTCSEEEEES-----S-HHHHH-HHHTTCCEEEEESSSCHHHHCCCSSSEEEEECGGGCGGGC
T ss_pred cccccCCCCHHHHHHHHHhCCEEEecC-----C-cHHHH-HHHcCCCEEEEECCCChhhcCCCCCCceEecCCcccccCC
Confidence 467777 4589999999999999662 2 34444 788999999852111111110 011111221 12
Q ss_pred CHHHHHHHHHHHHhC
Q 001292 554 NPEGLSRAFSLFISN 568 (1106)
Q Consensus 554 D~eeLAeAI~~LLsD 568 (1106)
++++..+++.++++.
T Consensus 308 ~~~~V~~~i~~~l~~ 322 (326)
T 2gt1_A 308 TANAVKQFIEENAEK 322 (326)
T ss_dssp CHHHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHHHHH
Confidence 577888888777764
No 65
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=84.99 E-value=6 Score=36.14 Aligned_cols=108 Identities=13% Similarity=0.037 Sum_probs=75.7
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH---------cCeEEEccCCCCCCCcHHHHHHHH---
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM---------ADIVLYGSSQVEQGFPSLIVRAMT--- 524 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa---------ADVfV~PS~~EeEGFGlvLLEAMA--- 524 (1106)
++|+.+.+.. ...++...+..|... .|.......+...++.. .|++++-.... +.-|..+++.+.
T Consensus 5 ilivdd~~~~-~~~l~~~L~~~~~~~-~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~-~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 5 IFLVEDNKAD-IRLIQEALANSTVPH-EVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLP-KKDGREVLAEIKSDP 81 (140)
T ss_dssp EEEECCCHHH-HHHHHHHHHTCSSCC-EEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCS-SSCHHHHHHHHHHST
T ss_pred EEEEeCCHHH-HHHHHHHHHhcCCCc-eEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCC-cccHHHHHHHHHcCc
Confidence 4566666543 577788888777653 57777777777777764 78988765543 245777777765
Q ss_pred --hCCCEEec-CCC---CchhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 525 --FGIPVITP-DFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 525 --~G~PVIAS-D~g---GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
..+|||+- ... ...+.+..|..+++..|-+.++|..+|..++.
T Consensus 82 ~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 130 (140)
T 1k68_A 82 TLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEE 130 (140)
T ss_dssp TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred ccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHH
Confidence 35788764 332 23455666889999999999999999998875
No 66
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=83.65 E-value=5.7 Score=37.05 Aligned_cols=110 Identities=13% Similarity=0.103 Sum_probs=76.4
Q ss_pred eEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHh-----C
Q 001292 454 FKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF-----G 526 (1106)
Q Consensus 454 ikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~-----G 526 (1106)
.+ ++|+.+.+.. ...++.+.+..|... .|.......+....+.. .|++|+-.... +.-|..+++.+.. .
T Consensus 6 ~~-ILivdd~~~~-~~~l~~~L~~~~~~~-~v~~~~~~~~a~~~l~~~~~dlii~D~~l~-~~~g~~~~~~lr~~~~~~~ 81 (144)
T 3kht_A 6 KR-VLVVEDNPDD-IALIRRVLDRKDIHC-QLEFVDNGAKALYQVQQAKYDLIILDIGLP-IANGFEVMSAVRKPGANQH 81 (144)
T ss_dssp EE-EEEECCCHHH-HHHHHHHHHHTTCCE-EEEEESSHHHHHHHHTTCCCSEEEECTTCG-GGCHHHHHHHHHSSSTTTT
T ss_pred CE-EEEEeCCHHH-HHHHHHHHHhcCCCe-eEEEECCHHHHHHHhhcCCCCEEEEeCCCC-CCCHHHHHHHHHhcccccC
Confidence 35 5666666543 577788888777653 46666666666666654 58888765443 3457788887764 5
Q ss_pred CCEEec-CCC---CchhhhccCCeEEEEcCC-CHHHHHHHHHHHHh
Q 001292 527 IPVITP-DFP---IIKEYVAEGAQVIFFQKD-NPEGLSRAFSLFIS 567 (1106)
Q Consensus 527 ~PVIAS-D~g---GI~EiV~Dg~nG~LV~~~-D~eeLAeAI~~LLs 567 (1106)
+|||+- ... ...+.+..|..+++..+. +.++|.++|..+++
T Consensus 82 ~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~ 127 (144)
T 3kht_A 82 TPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFS 127 (144)
T ss_dssp CCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHH
Confidence 888864 222 233556678899999998 99999999998876
No 67
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=83.50 E-value=6.3 Score=37.22 Aligned_cols=108 Identities=15% Similarity=0.107 Sum_probs=76.3
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH-----------HcCeEEEccCCCCCCCcHHHHHHHHh
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL-----------MADIVLYGSSQVEQGFPSLIVRAMTF 525 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya-----------aADVfV~PS~~EeEGFGlvLLEAMA~ 525 (1106)
++|+.+.+.. ...++.+.+..|... .|.......+...++. ..|++|+-.... +.-|..+++.+..
T Consensus 7 ILivddd~~~-~~~l~~~L~~~g~~~-~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~-~~~g~~~~~~lr~ 83 (152)
T 3heb_A 7 IVMIEDDLGH-ARLIEKNIRRAGVNN-EIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLP-DMTGIDILKLVKE 83 (152)
T ss_dssp EEEECCCHHH-HHHHHHHHHHTTCCC-CEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCS-SSBHHHHHHHHHH
T ss_pred EEEEeCCHHH-HHHHHHHHHhCCCcc-eEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCC-CCcHHHHHHHHHh
Confidence 5667666543 577888888888764 5777776667766663 478888765543 3557888887765
Q ss_pred -----CCCEEec-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 526 -----GIPVITP-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 526 -----G~PVIAS-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
.+|||+- .... ..+.+..|..+++..|-++++|.++|.++..
T Consensus 84 ~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 134 (152)
T 3heb_A 84 NPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGL 134 (152)
T ss_dssp STTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred cccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 5788764 3322 3455667889999999999999999988743
No 68
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=83.23 E-value=8.1 Score=36.03 Aligned_cols=112 Identities=13% Similarity=0.066 Sum_probs=76.9
Q ss_pred CeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHh-----
Q 001292 453 SFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF----- 525 (1106)
Q Consensus 453 dikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~----- 525 (1106)
..+ ++|+.+.+.. ...++...+..|+ .|.......+...++.. .|++|+-.... +.-|..+++.+..
T Consensus 8 ~~~-iLivd~~~~~-~~~l~~~L~~~g~---~v~~~~~~~~a~~~l~~~~~dlii~d~~l~-~~~g~~~~~~l~~~~~~~ 81 (147)
T 2zay_A 8 WWR-IMLVDTQLPA-LAASISALSQEGF---DIIQCGNAIEAVPVAVKTHPHLIITEANMP-KISGMDLFNSLKKNPQTA 81 (147)
T ss_dssp CEE-EEEECTTGGG-GHHHHHHHHHHTE---EEEEESSHHHHHHHHHHHCCSEEEEESCCS-SSCHHHHHHHHHTSTTTT
T ss_pred Cce-EEEEeCCHHH-HHHHHHHHHHcCC---eEEEeCCHHHHHHHHHcCCCCEEEEcCCCC-CCCHHHHHHHHHcCcccC
Confidence 345 5667776653 5788888887776 36666666666555544 78988765443 3457888888764
Q ss_pred CCCEEec-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcc
Q 001292 526 GIPVITP-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGK 570 (1106)
Q Consensus 526 G~PVIAS-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpe 570 (1106)
.+|||+- .... ..+.+..|..+++..+-+.++|..+|..++....
T Consensus 82 ~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 130 (147)
T 2zay_A 82 SIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLY 130 (147)
T ss_dssp TSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 5788763 3332 2344566889999999999999999999886443
No 69
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=82.05 E-value=11 Score=34.85 Aligned_cols=109 Identities=15% Similarity=0.070 Sum_probs=74.2
Q ss_pred CeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHh-----
Q 001292 453 SFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF----- 525 (1106)
Q Consensus 453 dikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~----- 525 (1106)
..+ ++|+.+.+.. ...++...+..|+ .|.......+...++.. .|++|+-.... +.-|..+++.+..
T Consensus 7 ~~~-iLivdd~~~~-~~~l~~~L~~~g~---~v~~~~~~~~a~~~l~~~~~dlii~d~~l~-~~~g~~~~~~l~~~~~~~ 80 (142)
T 3cg4_A 7 KGD-VMIVDDDAHV-RIAVKTILSDAGF---HIISADSGGQCIDLLKKGFSGVVLLDIMMP-GMDGWDTIRAILDNSLEQ 80 (142)
T ss_dssp CCE-EEEECSCHHH-HHHHHHHHHHTTC---EEEEESSHHHHHHHHHTCCCEEEEEESCCS-SSCHHHHHHHHHHTTCCT
T ss_pred CCe-EEEEcCCHHH-HHHHHHHHHHCCe---EEEEeCCHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHhhcccC
Confidence 345 5667666543 5777777777765 46666666666666654 57888755443 2457788888764
Q ss_pred CCCEEec-C---CCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 526 GIPVITP-D---FPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 526 G~PVIAS-D---~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
.+|||+- + .....+.+..|..+++..+-+.++|..+|..++.
T Consensus 81 ~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 81 GIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp TEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHH
Confidence 4677753 2 2334456666778999999999999999998875
No 70
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=81.59 E-value=11 Score=34.64 Aligned_cols=108 Identities=13% Similarity=0.116 Sum_probs=73.2
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH---HcCeEEEccCCCCCCCcHHHHHHHHh-----CCC
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL---MADIVLYGSSQVEQGFPSLIVRAMTF-----GIP 528 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya---aADVfV~PS~~EeEGFGlvLLEAMA~-----G~P 528 (1106)
++|+.+.+.. ...++.+.++.|.. .|.......+....+. ..|++++--... +.-|..+++.+.. .+|
T Consensus 8 iLivdd~~~~-~~~l~~~L~~~g~~--~v~~~~~~~~a~~~~~~~~~~dlvi~D~~~p-~~~g~~~~~~lr~~~~~~~~p 83 (129)
T 3h1g_A 8 LLVVDDSSTM-RRIIKNTLSRLGYE--DVLEAEHGVEAWEKLDANADTKVLITDWNMP-EMNGLDLVKKVRSDSRFKEIP 83 (129)
T ss_dssp EEEECSCHHH-HHHHHHHHHHTTCC--CEEEESSHHHHHHHHHHCTTCCEEEECSCCS-SSCHHHHHHHHHTSTTCTTCC
T ss_pred EEEEeCCHHH-HHHHHHHHHHcCCc--EEEEeCCHHHHHHHHHhCCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCCCCCe
Confidence 4667776643 57788888888875 3655555545444442 368888654432 2457888888763 578
Q ss_pred EEec-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHhC
Q 001292 529 VITP-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFISN 568 (1106)
Q Consensus 529 VIAS-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsD 568 (1106)
||+- .... ..+.+..|..+++..|-++++|..+|..++..
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 84 IIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp EEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred EEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 8764 3332 23556678899999999999999999998764
No 71
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=80.59 E-value=8.7 Score=35.64 Aligned_cols=109 Identities=15% Similarity=0.035 Sum_probs=74.9
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH----HcCeEEEccCCCCCCCcHHHHHHHHh---CCCE
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL----MADIVLYGSSQVEQGFPSLIVRAMTF---GIPV 529 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya----aADVfV~PS~~EeEGFGlvLLEAMA~---G~PV 529 (1106)
++|+.+.+.. ...++.+.+..|. .|.......+....+. ..|++|+-.... +.-|..+++.+.. .+||
T Consensus 6 ilivdd~~~~-~~~l~~~l~~~g~---~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~-~~~g~~~~~~l~~~~~~~~i 80 (143)
T 3jte_A 6 ILVIDDESTI-LQNIKFLLEIDGN---EVLTASSSTEGLRIFTENCNSIDVVITDMKMP-KLSGMDILREIKKITPHMAV 80 (143)
T ss_dssp EEEECSCHHH-HHHHHHHHHHTTC---EEEEESSHHHHHHHHHHTTTTCCEEEEESCCS-SSCHHHHHHHHHHHCTTCEE
T ss_pred EEEEcCCHHH-HHHHHHHHHhCCc---eEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCC-CCcHHHHHHHHHHhCCCCeE
Confidence 4667666543 5777888887764 4666666666666665 579988765543 3457777776543 5777
Q ss_pred Eec-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcc
Q 001292 530 ITP-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGK 570 (1106)
Q Consensus 530 IAS-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpe 570 (1106)
|+- .... ..+.+..|..+++..+-+.++|..+|..++....
T Consensus 81 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~ 125 (143)
T 3jte_A 81 IILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKK 125 (143)
T ss_dssp EEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHH
Confidence 763 3332 4456777889999999999999999999987444
No 72
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=80.28 E-value=11 Score=35.50 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=71.6
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHH---hCCCEEe
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMT---FGIPVIT 531 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA---~G~PVIA 531 (1106)
++|+.+.+.. ...+.......|+ .|.......+....+. ..|++|+-.... +.-|..+++.+. ..+|||+
T Consensus 6 ILivdd~~~~-~~~l~~~L~~~g~---~v~~~~~~~~a~~~l~~~~~dliild~~l~-~~~g~~~~~~l~~~~~~~pii~ 80 (155)
T 1qkk_A 6 VFLIDDDRDL-RKAMQQTLELAGF---TVSSFASATEALAGLSADFAGIVISDIRMP-GMDGLALFRKILALDPDLPMIL 80 (155)
T ss_dssp EEEECSCHHH-HHHHHHHHHHTTC---EEEEESCHHHHHHTCCTTCCSEEEEESCCS-SSCHHHHHHHHHHHCTTSCEEE
T ss_pred EEEEeCCHHH-HHHHHHHHHHcCc---EEEEECCHHHHHHHHHhCCCCEEEEeCCCC-CCCHHHHHHHHHhhCCCCCEEE
Confidence 4566666543 5677777777665 3555555555555443 368888765443 244667777664 3688876
Q ss_pred c-CCC---CchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcc
Q 001292 532 P-DFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGK 570 (1106)
Q Consensus 532 S-D~g---GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpe 570 (1106)
- +.. ...+.+..|..+++..|-++++|..+|..++....
T Consensus 81 ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~~ 123 (155)
T 1qkk_A 81 VTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRR 123 (155)
T ss_dssp EECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHHH
Confidence 4 322 23455667889999999999999999999886433
No 73
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=80.23 E-value=8.8 Score=35.50 Aligned_cols=108 Identities=12% Similarity=0.141 Sum_probs=75.3
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH------------HcCeEEEccCCCCCCCcHHHHHHHH
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL------------MADIVLYGSSQVEQGFPSLIVRAMT 524 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya------------aADVfV~PS~~EeEGFGlvLLEAMA 524 (1106)
++|+.+.+.. ...++...+..|... .|.......+...++. ..|++|+-.... +.-|..+++.+.
T Consensus 9 iLivdd~~~~-~~~l~~~L~~~g~~~-~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~-~~~g~~~~~~l~ 85 (149)
T 1k66_A 9 LLVVEDSDED-FSTFQRLLQREGVVN-PIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLP-GTDGREVLQEIK 85 (149)
T ss_dssp EEEECCCHHH-HHHHHHHHHHTTBCS-CEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCS-SSCHHHHHHHHT
T ss_pred EEEEECCHHH-HHHHHHHHHHcCCCc-eEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCC-CCCHHHHHHHHH
Confidence 4566666543 577788888887753 5777777777776665 368988765543 245777788775
Q ss_pred -----hCCCEEec-CCC---CchhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 525 -----FGIPVITP-DFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 525 -----~G~PVIAS-D~g---GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
..+|||+- ... ...+.+..|..+++..+-+.++|..+|..++.
T Consensus 86 ~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 137 (149)
T 1k66_A 86 QDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIK 137 (149)
T ss_dssp TSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred hCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 45787764 332 23455667888999999999999999988865
No 74
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=79.98 E-value=12 Score=34.31 Aligned_cols=112 Identities=18% Similarity=0.149 Sum_probs=76.9
Q ss_pred eEEEEEEcCCCCccHHHHHHHHHH-cCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHh-----
Q 001292 454 FKFVFLCGNSTDGYNDALQEVASR-LGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF----- 525 (1106)
Q Consensus 454 ikfLIIVG~GperY~eeLkeLaek-lGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~----- 525 (1106)
.+ ++|+.+.+.. ...++.+.+. .|+. .|.......+...++.. .|++|+-.... +.-|..+++.+..
T Consensus 9 ~~-iLivdd~~~~-~~~l~~~L~~~~~~~--~v~~~~~~~~a~~~l~~~~~dlii~d~~l~-~~~g~~~~~~l~~~~~~~ 83 (143)
T 3cnb_A 9 FS-ILIIEDDKEF-ADMLTQFLENLFPYA--KIKIAYNPFDAGDLLHTVKPDVVMLDLMMV-GMDGFSICHRIKSTPATA 83 (143)
T ss_dssp CE-EEEECSCHHH-HHHHHHHHHHHCTTC--EEEEECSHHHHHHHHHHTCCSEEEEETTCT-TSCHHHHHHHHHTSTTTT
T ss_pred ce-EEEEECCHHH-HHHHHHHHHhccCcc--EEEEECCHHHHHHHHHhcCCCEEEEecccC-CCcHHHHHHHHHhCcccc
Confidence 35 5667666543 5677777777 6664 36666666666666654 68888765543 2457778887764
Q ss_pred CCCEEe-cCCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcc
Q 001292 526 GIPVIT-PDFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGK 570 (1106)
Q Consensus 526 G~PVIA-SD~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpe 570 (1106)
.+|||+ ++... ..+.+..|..+++..+-+.++|..+|..++....
T Consensus 84 ~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 132 (143)
T 3cnb_A 84 NIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKK 132 (143)
T ss_dssp TSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred CCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 578775 33332 2455667888999999999999999999987654
No 75
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=79.89 E-value=8.6 Score=36.73 Aligned_cols=106 Identities=11% Similarity=0.054 Sum_probs=71.8
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEE-EcCChhhHHHHHHH----cCeEEEccCCCCCCCcHHHHHHHHh---CCC
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVR-HYGFNGDVNGVLLM----ADIVLYGSSQVEQGFPSLIVRAMTF---GIP 528 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~-flG~~eDL~~Lyaa----ADVfV~PS~~EeEGFGlvLLEAMA~---G~P 528 (1106)
++|+.+.+.. ...++.+.++.|+. |. ......+....+.. .|++|+--... +.-|..+++.+.. .+|
T Consensus 39 Ilivdd~~~~-~~~l~~~L~~~g~~---v~~~~~~~~~al~~l~~~~~~~dliilD~~l~-~~~g~~~~~~lr~~~~~~~ 113 (157)
T 3hzh_A 39 VLIVDDSVFT-VKQLTQIFTSEGFN---IIDTAADGEEAVIKYKNHYPNIDIVTLXITMP-KMDGITCLSNIMEFDKNAR 113 (157)
T ss_dssp EEEECSCHHH-HHHHHHHHHHTTCE---EEEEESSHHHHHHHHHHHGGGCCEEEECSSCS-SSCHHHHHHHHHHHCTTCC
T ss_pred EEEEeCCHHH-HHHHHHHHHhCCCe---EEEEECCHHHHHHHHHhcCCCCCEEEEeccCC-CccHHHHHHHHHhhCCCCc
Confidence 5666666543 57777888777754 44 55555566655553 48988865543 3457777776643 678
Q ss_pred EEec-CCC---CchhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 529 VITP-DFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 529 VIAS-D~g---GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
||+- ... ...+.+..|..+++..+-+.++|.++|..++.
T Consensus 114 ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 114 VIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp EEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred EEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 8764 222 23455677889999999999999999998764
No 76
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=78.98 E-value=26 Score=32.44 Aligned_cols=108 Identities=10% Similarity=0.066 Sum_probs=72.9
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH---HcCeEEEccCCCCCCCcHHHHHHHH--hCCCEEe
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL---MADIVLYGSSQVEQGFPSLIVRAMT--FGIPVIT 531 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya---aADVfV~PS~~EeEGFGlvLLEAMA--~G~PVIA 531 (1106)
++|+.+.+.. ...++.+.+..|+ .|.......+....+. ..|++|+-.......-|..+++.+. -.+|||+
T Consensus 8 ilivdd~~~~-~~~l~~~L~~~g~---~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ 83 (140)
T 3h5i_A 8 ILIVEDSKFQ-AKTIANILNKYGY---TVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPVVF 83 (140)
T ss_dssp EEEECSCHHH-HHHHHHHHHHTTC---EEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEE
T ss_pred EEEEeCCHHH-HHHHHHHHHHcCC---EEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEE
Confidence 5667666543 5777888887775 3555555556666654 3588887654410144677777655 3788886
Q ss_pred c-C---CCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhC
Q 001292 532 P-D---FPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISN 568 (1106)
Q Consensus 532 S-D---~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsD 568 (1106)
- . .....+.+..|..+++..|-++++|..+|..++..
T Consensus 84 ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 124 (140)
T 3h5i_A 84 LTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRL 124 (140)
T ss_dssp EESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 3 2 22345667778899999999999999999998863
No 77
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=78.97 E-value=14 Score=33.29 Aligned_cols=109 Identities=12% Similarity=0.084 Sum_probs=72.3
Q ss_pred eEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHh-----C
Q 001292 454 FKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF-----G 526 (1106)
Q Consensus 454 ikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~-----G 526 (1106)
++ ++|+.+.+.. ...++.+.+..|+. .|.......+....+.. .|++++--... ..-|..+++.+.- .
T Consensus 5 ~~-ilivdd~~~~-~~~l~~~l~~~~~~--~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~-~~~g~~l~~~l~~~~~~~~ 79 (128)
T 1jbe_A 5 LK-FLVVDDFSTM-RRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMP-NMDGLELLKTIRAXXAMSA 79 (128)
T ss_dssp CC-EEEECSCHHH-HHHHHHHHHHTTCC--CEEEESSHHHHHHHHTTCCCCEEEEESCCS-SSCHHHHHHHHHC--CCTT
T ss_pred cE-EEEECCCHHH-HHHHHHHHHHcCCc--EEEeeCCHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHhhcccCC
Confidence 34 4667766542 56777777777764 36655555555555543 58888754442 2457788887764 5
Q ss_pred CCEEec-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 527 IPVITP-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 527 ~PVIAS-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
+|||.- .... ..+.+..|..+++..|-+.++|..+|..++.
T Consensus 80 ~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~ 124 (128)
T 1jbe_A 80 LPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFE 124 (128)
T ss_dssp CCEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CcEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHH
Confidence 777753 3322 3455667889999999999999999988764
No 78
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=78.81 E-value=8 Score=35.77 Aligned_cols=111 Identities=9% Similarity=-0.051 Sum_probs=74.8
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH-------cCeEEEccCCCCCCCcHHHHHHHHh----
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM-------ADIVLYGSSQVEQGFPSLIVRAMTF---- 525 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa-------ADVfV~PS~~EeEGFGlvLLEAMA~---- 525 (1106)
++|+.+.+.. ...++.+.+..|... .|.......+...++.. .|++|+-.... +.-|..+++.+..
T Consensus 12 iLivdd~~~~-~~~l~~~l~~~~~~~-~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~-~~~g~~~~~~l~~~~~~ 88 (146)
T 3ilh_A 12 VLLIDDDDIV-NFLNTTIIRMTHRVE-EIQSVTSGNAAINKLNELYAAGRWPSIICIDINMP-GINGWELIDLFKQHFQP 88 (146)
T ss_dssp EEEECSCHHH-HHHHHHHHHTTCCEE-EEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCS-SSCHHHHHHHHHHHCGG
T ss_pred EEEEeCCHHH-HHHHHHHHHhcCCCe-eeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCC-CCCHHHHHHHHHHhhhh
Confidence 5667666542 466777777666532 46666666677677765 79998765543 3557888887654
Q ss_pred ---CCCEEec-CCC---CchhhhccC-CeEEEEcCCCHHHHHHHHHHHHhCcc
Q 001292 526 ---GIPVITP-DFP---IIKEYVAEG-AQVIFFQKDNPEGLSRAFSLFISNGK 570 (1106)
Q Consensus 526 ---G~PVIAS-D~g---GI~EiV~Dg-~nG~LV~~~D~eeLAeAI~~LLsDpe 570 (1106)
.+|||.. ... ...+.+..+ ..+++..|-++++|.++|........
T Consensus 89 ~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~~ 141 (146)
T 3ilh_A 89 MKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEGH 141 (146)
T ss_dssp GTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC--
T ss_pred ccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhcc
Confidence 5777754 222 233445566 78899999999999999999887654
No 79
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=78.68 E-value=7.4 Score=36.70 Aligned_cols=112 Identities=13% Similarity=0.065 Sum_probs=73.6
Q ss_pred eEEEEEEcCCCCccHHHHHHHHHHc-CCCCCcEEEcCChhhHHHHHHH---cCeEEEccCCCCCCCcHHHHHHHHh---C
Q 001292 454 FKFVFLCGNSTDGYNDALQEVASRL-GLLEHSVRHYGFNGDVNGVLLM---ADIVLYGSSQVEQGFPSLIVRAMTF---G 526 (1106)
Q Consensus 454 ikfLIIVG~GperY~eeLkeLaekl-GL~d~rV~flG~~eDL~~Lyaa---ADVfV~PS~~EeEGFGlvLLEAMA~---G 526 (1106)
++ ++|+.+.+.. ...++.+.+.. |.. .|.......+....+.. .|++|+-.... +.-|..+++.+.. .
T Consensus 4 ~~-iLivdd~~~~-~~~l~~~L~~~~g~~--~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~-~~~g~~~~~~l~~~~~~ 78 (154)
T 2qsj_A 4 TV-VLIVDDHHLI-RAGAKNLLEGAFSGM--RVEGAETVSDALAFLEADNTVDLILLDVNLP-DAEAIDGLVRLKRFDPS 78 (154)
T ss_dssp EE-EEEECSCHHH-HHHHHHHHHHHCTTE--EEEEESSHHHHHHHHHTTCCCSEEEECC-------CHHHHHHHHHHCTT
T ss_pred cE-EEEEcCCHHH-HHHHHHHHHhCCCce--EEEEecCHHHHHHHHhccCCCCEEEEeCCCC-CCchHHHHHHHHHhCCC
Confidence 35 4666666543 56777777766 553 46666777777777765 78988765442 2346777776653 6
Q ss_pred CCEEec-CC---CCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcc
Q 001292 527 IPVITP-DF---PIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGK 570 (1106)
Q Consensus 527 ~PVIAS-D~---gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpe 570 (1106)
+|||+- .. ....+.+..|..+++..+-+.++|..+|..++....
T Consensus 79 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~ 126 (154)
T 2qsj_A 79 NAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEI 126 (154)
T ss_dssp SEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCC
T ss_pred CeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCE
Confidence 788874 22 223455667888999998999999999999987544
No 80
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=75.91 E-value=16 Score=33.61 Aligned_cols=109 Identities=7% Similarity=0.004 Sum_probs=75.1
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--------cCeEEEccCCCCCCCcHHHHHHHH----
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--------ADIVLYGSSQVEQGFPSLIVRAMT---- 524 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--------ADVfV~PS~~EeEGFGlvLLEAMA---- 524 (1106)
++|+.+.+.. ...++...++.|... .|.......+...++.. .|++|+--... +.-|..+++.+.
T Consensus 10 ILivdd~~~~-~~~l~~~L~~~g~~~-~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~-~~~g~~~~~~l~~~~~ 86 (143)
T 2qvg_A 10 ILYLEDDEVD-IQSVERVFHKISSLI-KIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIP-KMNGIEFLKELRDDSS 86 (143)
T ss_dssp EEEECCCHHH-HHHHHHHHHHHCTTC-CEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCT-TSCHHHHHHHHTTSGG
T ss_pred EEEEeCCHHH-HHHHHHHHHHhCCCc-eEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCC-CCCHHHHHHHHHcCcc
Confidence 4566766543 577788888888753 57777777777777753 78988765443 244677777775
Q ss_pred -hCCCEEec-CCC---CchhhhccCCeEEEEcCCCHHHHHHHHHHHHhC
Q 001292 525 -FGIPVITP-DFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISN 568 (1106)
Q Consensus 525 -~G~PVIAS-D~g---GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsD 568 (1106)
..+|||+- ... ...+.+..|..+++..|-++++|.+++.....-
T Consensus 87 ~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~~ 135 (143)
T 2qvg_A 87 FTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQSM 135 (143)
T ss_dssp GTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHHC
T ss_pred ccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh
Confidence 46787764 332 234556678899999999999999997765443
No 81
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=75.83 E-value=13 Score=35.02 Aligned_cols=113 Identities=14% Similarity=0.134 Sum_probs=75.0
Q ss_pred eEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHh---CCC
Q 001292 454 FKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF---GIP 528 (1106)
Q Consensus 454 ikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~---G~P 528 (1106)
++ ++|+.+.+.. ...++.+.+..+-.. .|.......+....+.. .|++|+-.... +.-|..+++.+.. .+|
T Consensus 21 ~~-iLivdd~~~~-~~~l~~~L~~~~~~~-~v~~~~~~~~al~~l~~~~~dlii~D~~l~-~~~g~~~~~~l~~~~~~~~ 96 (150)
T 4e7p_A 21 MK-VLVAEDQSML-RDAMCQLLTLQPDVE-SVLQAKNGQEAIQLLEKESVDIAILDVEMP-VKTGLEVLEWIRSEKLETK 96 (150)
T ss_dssp EE-EEEECSCHHH-HHHHHHHHHTSTTEE-EEEEESSHHHHHHHHTTSCCSEEEECSSCS-SSCHHHHHHHHHHTTCSCE
T ss_pred cE-EEEEcCCHHH-HHHHHHHHHhCCCcE-EEEEECCHHHHHHHhhccCCCEEEEeCCCC-CCcHHHHHHHHHHhCCCCe
Confidence 45 5667666542 466666666544222 45555666666666654 68888765543 3557778877654 577
Q ss_pred EEec-CCC---CchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcc
Q 001292 529 VITP-DFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGK 570 (1106)
Q Consensus 529 VIAS-D~g---GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpe 570 (1106)
||+- ... ...+.+..|..+++..+.+.++|..+|..++....
T Consensus 97 ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 142 (150)
T 4e7p_A 97 VVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRK 142 (150)
T ss_dssp EEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCE
Confidence 7753 332 34456677889999999999999999999988654
No 82
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=75.32 E-value=15 Score=34.58 Aligned_cols=116 Identities=9% Similarity=0.048 Sum_probs=75.9
Q ss_pred CCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHHh---C
Q 001292 452 GSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMTF---G 526 (1106)
Q Consensus 452 PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA~---G 526 (1106)
...+ ++|+.+.+.. ...++.+.++.|... .|.......+....+. ..|++++-.... +.-|..+++.+.. .
T Consensus 14 ~~~~-iLivdd~~~~-~~~l~~~L~~~~~~~-~v~~~~~~~~a~~~l~~~~~dlii~d~~l~-~~~g~~~~~~l~~~~~~ 89 (152)
T 3eul_A 14 EKVR-VVVGDDHPLF-REGVVRALSLSGSVN-VVGEADDGAAALELIKAHLPDVALLDYRMP-GMDGAQVAAAVRSYELP 89 (152)
T ss_dssp CCEE-EEEECSSHHH-HHHHHHHHHHHSSEE-EEEEESSHHHHHHHHHHHCCSEEEEETTCS-SSCHHHHHHHHHHTTCS
T ss_pred ceEE-EEEEcCCHHH-HHHHHHHHhhCCCeE-EEEEeCCHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHhcCCC
Confidence 3445 5677776643 577778777776432 3434555556555553 368888765443 3557777777654 4
Q ss_pred CCEEec-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHhCccc
Q 001292 527 IPVITP-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKL 571 (1106)
Q Consensus 527 ~PVIAS-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpel 571 (1106)
+|||+- .... ..+.+..|..+++..+.+.++|.++|..++.....
T Consensus 90 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~ 138 (152)
T 3eul_A 90 TRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDV 138 (152)
T ss_dssp CEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC--
T ss_pred CeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCee
Confidence 677753 3332 34566778899999999999999999999886553
No 83
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=75.26 E-value=25 Score=32.24 Aligned_cols=111 Identities=8% Similarity=0.010 Sum_probs=74.9
Q ss_pred eEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHh-----C
Q 001292 454 FKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF-----G 526 (1106)
Q Consensus 454 ikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~-----G 526 (1106)
.+ ++|+.+.+.. ...++.+.++.|+. |.......+....+.. .|++|+-.... +.-|..+++.+.. .
T Consensus 7 ~~-iLivdd~~~~-~~~l~~~l~~~g~~---v~~~~~~~~a~~~l~~~~~dlvi~d~~l~-~~~g~~~~~~l~~~~~~~~ 80 (140)
T 3grc_A 7 PR-ILICEDDPDI-ARLLNLMLEKGGFD---SDMVHSAAQALEQVARRPYAAMTVDLNLP-DQDGVSLIRALRRDSRTRD 80 (140)
T ss_dssp SE-EEEECSCHHH-HHHHHHHHHHTTCE---EEEECSHHHHHHHHHHSCCSEEEECSCCS-SSCHHHHHHHHHTSGGGTT
T ss_pred CC-EEEEcCCHHH-HHHHHHHHHHCCCe---EEEECCHHHHHHHHHhCCCCEEEEeCCCC-CCCHHHHHHHHHhCcccCC
Confidence 35 5666666543 57777877776653 6666655565555544 58888765543 3557888887765 6
Q ss_pred CCEEecC-CCC---ch-hhhccCCeEEEEcCCCHHHHHHHHHHHHhCcc
Q 001292 527 IPVITPD-FPI---IK-EYVAEGAQVIFFQKDNPEGLSRAFSLFISNGK 570 (1106)
Q Consensus 527 ~PVIASD-~gG---I~-EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpe 570 (1106)
+|||+-- ... .. +.+..|..+++..|-+.++|..+|..+++...
T Consensus 81 ~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~ 129 (140)
T 3grc_A 81 LAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMA 129 (140)
T ss_dssp CEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcC
Confidence 7888643 221 22 44556778999999999999999999987544
No 84
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=75.23 E-value=18 Score=33.17 Aligned_cols=109 Identities=9% Similarity=0.023 Sum_probs=72.3
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH---cCeEEEccCCCCCCCcHHHHHHHHh----CCCE
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM---ADIVLYGSSQVEQGFPSLIVRAMTF----GIPV 529 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa---ADVfV~PS~~EeEGFGlvLLEAMA~----G~PV 529 (1106)
++|+.+.+.. ...++.+.++.|+. |.......+....+.. .|++|+-.... +.-|..+++.+.. .+||
T Consensus 10 ilivdd~~~~-~~~l~~~L~~~g~~---v~~~~~~~~a~~~~~~~~~~dlvi~D~~l~-~~~g~~~~~~l~~~~~~~~~i 84 (136)
T 3hdv_A 10 VLVVDDNAVN-REALILYLKSRGID---AVGADGAEEARLYLHYQKRIGLMITDLRMQ-PESGLDLIRTIRASERAALSI 84 (136)
T ss_dssp EEEECSCHHH-HHHHHHHHHHTTCC---EEEESSHHHHHHHHHHCTTEEEEEECSCCS-SSCHHHHHHHHHTSTTTTCEE
T ss_pred EEEECCCHHH-HHHHHHHHHHcCce---EEEeCCHHHHHHHHHhCCCCcEEEEeccCC-CCCHHHHHHHHHhcCCCCCCE
Confidence 5667766543 57778888877764 5555555555444443 67888765543 3557888887754 3677
Q ss_pred Eec-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcc
Q 001292 530 ITP-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGK 570 (1106)
Q Consensus 530 IAS-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpe 570 (1106)
|+. .... ..+.+..|..+++..|-+.++|..+|.++.....
T Consensus 85 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (136)
T 3hdv_A 85 IVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGE 129 (136)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC---
T ss_pred EEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCch
Confidence 764 3222 3455667889999999999999999999987654
No 85
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=75.04 E-value=16 Score=34.38 Aligned_cols=111 Identities=12% Similarity=0.031 Sum_probs=72.6
Q ss_pred CeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH---------HcCeEEEccCCCCCCCcHHHHHHH
Q 001292 453 SFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL---------MADIVLYGSSQVEQGFPSLIVRAM 523 (1106)
Q Consensus 453 dikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya---------aADVfV~PS~~EeEGFGlvLLEAM 523 (1106)
..+ ++|+.+.+.. ...++...+..|... .|.......+...++. ..|++++--... ..-|..+++.+
T Consensus 8 ~~~-ILivdd~~~~-~~~l~~~L~~~~~~~-~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp-~~~g~~l~~~l 83 (149)
T 1i3c_A 8 PKV-ILLVEDSKAD-SRLVQEVLKTSTIDH-ELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLP-KKDGREVLAEI 83 (149)
T ss_dssp CEE-EEEECCCHHH-HHHHHHHHHSCCSCE-EEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCS-SSCHHHHHHHH
T ss_pred CCe-EEEEECCHHH-HHHHHHHHHhcCCCc-cEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCC-CCcHHHHHHHH
Confidence 345 5677776643 566777777665542 4555555566666665 369988754442 23467788877
Q ss_pred Hh-----CCCEEec-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 524 TF-----GIPVITP-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 524 A~-----G~PVIAS-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
.- .+|||+- .... ..+.+..|..+++..+-+.++|..+|..++.
T Consensus 84 ~~~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 136 (149)
T 1i3c_A 84 KQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIES 136 (149)
T ss_dssp HHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred HhCcCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 53 5687753 3332 3455667889999999999999999887753
No 86
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=74.80 E-value=15 Score=34.96 Aligned_cols=111 Identities=14% Similarity=0.129 Sum_probs=75.5
Q ss_pred eEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHH-----hC
Q 001292 454 FKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMT-----FG 526 (1106)
Q Consensus 454 ikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA-----~G 526 (1106)
.+ ++|+.+.+.. ...++++.+..|+ .|.......+....+.. .|++|+-.... +.-|..+++.+. ..
T Consensus 8 ~~-ILivdd~~~~-~~~l~~~L~~~g~---~v~~~~~~~~al~~l~~~~~dlii~D~~l~-~~~g~~~~~~lr~~~~~~~ 81 (154)
T 3gt7_A 8 GE-ILIVEDSPTQ-AEHLKHILEETGY---QTEHVRNGREAVRFLSLTRPDLIISDVLMP-EMDGYALCRWLKGQPDLRT 81 (154)
T ss_dssp CE-EEEECSCHHH-HHHHHHHHHTTTC---EEEEESSHHHHHHHHTTCCCSEEEEESCCS-SSCHHHHHHHHHHSTTTTT
T ss_pred Cc-EEEEeCCHHH-HHHHHHHHHHCCC---EEEEeCCHHHHHHHHHhCCCCEEEEeCCCC-CCCHHHHHHHHHhCCCcCC
Confidence 35 5667666543 5777777776665 36555555666666654 68888765543 345788888775 35
Q ss_pred CCEEec-CCC---CchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcc
Q 001292 527 IPVITP-DFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGK 570 (1106)
Q Consensus 527 ~PVIAS-D~g---GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpe 570 (1106)
+|||+- ... ...+.+..|..+++..|-+.++|..+|..++....
T Consensus 82 ~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 129 (154)
T 3gt7_A 82 IPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVK 129 (154)
T ss_dssp SCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 788763 222 23455667889999999999999999999987544
No 87
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=73.00 E-value=33 Score=43.17 Aligned_cols=141 Identities=13% Similarity=0.073 Sum_probs=90.8
Q ss_pred CCcEEEEEEcccCccccccCCHHH-HHHHHHHhHHHHHhh------cc-----CCCCeEEEEEEcCCCCcc--HHHHHHH
Q 001292 409 KDEIVVVVVGSSFFYNELSWDYAV-AMHDVGPLLIKYARR------NS-----VEGSFKFVFLCGNSTDGY--NDALQEV 474 (1106)
Q Consensus 409 ~d~~VIL~VGRl~~y~kg~Kg~dl-LLeA~k~Ll~k~akl------k~-----~~PdikfLIIVG~GperY--~eeLkeL 474 (1106)
++...++++-|+..|| .+.+ ++..+..+.. +... .. . .... +|++|.-...| ...+-++
T Consensus 598 p~sLfdvq~KR~heYK----Rq~LniL~ii~ry~~-Ik~~~~~~~~p~~~~~~~-~P~~-~IFaGKAaP~y~~aK~iIkl 670 (879)
T 1ygp_A 598 DDTLFDMQVKRIHEYK----RQQLNVFGIIYRYLA-MKNMLKNGASIEEVARKY-PRKV-SIFGGKSAPGYYMAKLIIKL 670 (879)
T ss_dssp GGCEEEEEESCCCGGG----THHHHHHHHHHHHHH-HHHHHHTTCCHHHHHHHS-CCEE-EEEECCCCTTCHHHHHHHHH
T ss_pred CCeeeeeeeehhhHhH----HHHHHHHHHHHHHHH-HHhCccccCCCcccccCC-CCeE-EEEeccCCCCcHHHHHHHHH
Confidence 6789999998888754 5555 5665544421 1111 10 1 2344 58888733222 2223233
Q ss_pred HHHcC--------CCCC--cEEEcC--ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEecCCCCchhhhc
Q 001292 475 ASRLG--------LLEH--SVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVA 542 (1106)
Q Consensus 475 aeklG--------L~d~--rV~flG--~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIASD~gGI~EiV~ 542 (1106)
+.... +. + +|+|+. .+.-...++.+|||-..-|..--|.-|..=+-+|..|.+.|++--|...|+.+
T Consensus 671 I~~va~~iN~Dp~v~-~~LKVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMKfalNGaLtlgtlDGanvEi~e 749 (879)
T 1ygp_A 671 INCVADIVNNDESIE-HLLKVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGANVEITR 749 (879)
T ss_dssp HHHHHHHHTTCGGGT-TSEEEEEETTCCHHHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEEESCTHHHHHHH
T ss_pred HHHHHHHhccChhhC-CceEEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCchhhHHHHcCCeeeecccchhHHHHH
Confidence 32221 12 2 588777 45667899999999998886544689999999999999999998888777765
Q ss_pred c--CCeEEEEcCCCHHHH
Q 001292 543 E--GAQVIFFQKDNPEGL 558 (1106)
Q Consensus 543 D--g~nG~LV~~~D~eeL 558 (1106)
+ .+|+++|-. +.+++
T Consensus 750 ~vG~eN~fiFG~-~~~ev 766 (879)
T 1ygp_A 750 EIGEDNVFLFGN-LSENV 766 (879)
T ss_dssp HHCGGGSEEESC-CHHHH
T ss_pred HcCcccEEEccC-CHHHH
Confidence 4 458998853 34443
No 88
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=72.90 E-value=27 Score=31.19 Aligned_cols=107 Identities=8% Similarity=0.040 Sum_probs=68.6
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHHh-----CCCE
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMTF-----GIPV 529 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA~-----G~PV 529 (1106)
++|+.+.+.. ...++.+.+..|+. |.......+...++. ..|++++--... +.-|..+++.+.- .+||
T Consensus 4 ilivdd~~~~-~~~l~~~L~~~~~~---v~~~~~~~~a~~~~~~~~~dlvi~D~~l~-~~~g~~~~~~l~~~~~~~~~~i 78 (124)
T 1mb3_A 4 VLIVEDNELN-MKLFHDLLEAQGYE---TLQTREGLSALSIARENKPDLILMDIQLP-EISGLEVTKWLKEDDDLAHIPV 78 (124)
T ss_dssp EEEECSCHHH-HHHHHHHHHHTTCE---EEEESCHHHHHHHHHHHCCSEEEEESBCS-SSBHHHHHHHHHHSTTTTTSCE
T ss_pred EEEEcCCHHH-HHHHHHHHHHcCcE---EEEeCCHHHHHHHHhcCCCCEEEEeCCCC-CCCHHHHHHHHHcCccccCCcE
Confidence 4567766643 56677777766653 444444444444443 368888754442 2446777877753 5788
Q ss_pred Eec-CC---CCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhC
Q 001292 530 ITP-DF---PIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISN 568 (1106)
Q Consensus 530 IAS-D~---gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsD 568 (1106)
|.- .. ....+.+..|..+++..|-++++|..+|..++..
T Consensus 79 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1mb3_A 79 VAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER 121 (124)
T ss_dssp EEEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred EEEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 764 22 2334556668889999999999999999988754
No 89
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=71.96 E-value=24 Score=32.10 Aligned_cols=110 Identities=10% Similarity=-0.002 Sum_probs=71.1
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHHh---CCCEEe
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMTF---GIPVIT 531 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA~---G~PVIA 531 (1106)
++|+.+.+.. ...++.+.++.|.. .+.......+....+. ..|++++-.... +.-|..+++.+.. .+|||.
T Consensus 4 ilivdd~~~~-~~~l~~~L~~~g~~--v~~~~~~~~~a~~~~~~~~~dlii~d~~l~-~~~g~~~~~~l~~~~~~~~ii~ 79 (134)
T 3f6c_A 4 AIIIDDHPLA-IAAIRNLLIKNDIE--ILAELTEGGSAVQRVETLKPDIVIIDVDIP-GVNGIQVLETLRKRQYSGIIII 79 (134)
T ss_dssp EEEECCCHHH-HHHHHHHHHHTTEE--EEEEESSSTTHHHHHHHHCCSEEEEETTCS-SSCHHHHHHHHHHTTCCSEEEE
T ss_pred EEEEcCCHHH-HHHHHHHHhhCCcE--EEEEcCCHHHHHHHHHhcCCCEEEEecCCC-CCChHHHHHHHHhcCCCCeEEE
Confidence 4566666542 57777777777643 2224444445444443 468888765543 3457777777654 467765
Q ss_pred c-C---CCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcc
Q 001292 532 P-D---FPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGK 570 (1106)
Q Consensus 532 S-D---~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpe 570 (1106)
- . .....+.+..|..+++..|-++++|.++|..++....
T Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 122 (134)
T 3f6c_A 80 VSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 122 (134)
T ss_dssp EECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCC
T ss_pred EeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCE
Confidence 3 2 2234566677889999999999999999999987544
No 90
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=71.91 E-value=22 Score=32.89 Aligned_cols=109 Identities=10% Similarity=0.064 Sum_probs=71.3
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHh-----CCCE
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF-----GIPV 529 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~-----G~PV 529 (1106)
++|+.+.+.. ...++.+.+..|+ .|.......+....+.. .|++++--... +.-|..+++.+.. .+||
T Consensus 7 iLivdd~~~~-~~~l~~~L~~~g~---~v~~~~~~~~al~~~~~~~~dlvl~D~~lp-~~~g~~~~~~lr~~~~~~~~pi 81 (136)
T 3t6k_A 7 LLIVDDDDTV-AEMLELVLRGAGY---EVRRAASGEEALQQIYKNLPDALICDVLLP-GIDGYTLCKRVRQHPLTKTLPI 81 (136)
T ss_dssp EEEECSCHHH-HHHHHHHHHHTTC---EEEEESSHHHHHHHHHHSCCSEEEEESCCS-SSCHHHHHHHHHHSGGGTTCCE
T ss_pred EEEEeCCHHH-HHHHHHHHHHCCC---EEEEeCCHHHHHHHHHhCCCCEEEEeCCCC-CCCHHHHHHHHHcCCCcCCccE
Confidence 4666666542 5677777777665 35555555555555543 58888754442 2447778877643 5788
Q ss_pred Eec-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcc
Q 001292 530 ITP-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGK 570 (1106)
Q Consensus 530 IAS-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpe 570 (1106)
|+- .... ..+.+..|..+++..|-++++|..+|..++....
T Consensus 82 i~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~~ 126 (136)
T 3t6k_A 82 LMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILARTT 126 (136)
T ss_dssp EEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC--
T ss_pred EEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhccC
Confidence 763 3332 2345666889999999999999999999987544
No 91
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=71.77 E-value=24 Score=31.81 Aligned_cols=108 Identities=11% Similarity=0.006 Sum_probs=70.3
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHH---hCCCEEe
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMT---FGIPVIT 531 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA---~G~PVIA 531 (1106)
++++.+.+.. ...++.+.+..|+ .|.......+....+.. .|++++--... ..-|..+++.+. ..+|||.
T Consensus 6 ilivdd~~~~-~~~l~~~l~~~~~---~v~~~~~~~~~~~~~~~~~~dlvi~D~~l~-~~~g~~~~~~l~~~~~~~~ii~ 80 (126)
T 1dbw_A 6 VHIVDDEEPV-RKSLAFMLTMNGF---AVKMHQSAEAFLAFAPDVRNGVLVTDLRMP-DMSGVELLRNLGDLKINIPSIV 80 (126)
T ss_dssp EEEEESSHHH-HHHHHHHHHHTTC---EEEEESCHHHHHHHGGGCCSEEEEEECCST-TSCHHHHHHHHHHTTCCCCEEE
T ss_pred EEEEcCCHHH-HHHHHHHHHhCCc---EEEEeCCHHHHHHHHhcCCCCEEEEECCCC-CCCHHHHHHHHHhcCCCCCEEE
Confidence 5667776642 5667777776665 35555555555555544 57877654332 234667777664 3578876
Q ss_pred c-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHhCc
Q 001292 532 P-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNG 569 (1106)
Q Consensus 532 S-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDp 569 (1106)
- .... ..+.+..|..+++..|-+.++|..+|..++...
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (126)
T 1dbw_A 81 ITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEHL 122 (126)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTC
T ss_pred EECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHhh
Confidence 3 3332 345566788999999999999999999887643
No 92
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=71.28 E-value=29 Score=31.91 Aligned_cols=108 Identities=9% Similarity=0.126 Sum_probs=70.7
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH-------cCeEEEccCCCCCCCcHHHHHHHHh----
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM-------ADIVLYGSSQVEQGFPSLIVRAMTF---- 525 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa-------ADVfV~PS~~EeEGFGlvLLEAMA~---- 525 (1106)
++|+.+.+.. ...++.+.+..|+. .|.....-.+....+.. .|++++--... ..-|..+++.+..
T Consensus 5 ILivdD~~~~-~~~l~~~L~~~g~~--~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp-~~~G~~~~~~lr~~~~~ 80 (133)
T 2r25_B 5 ILVVEDNHVN-QEVIKRMLNLEGIE--NIELACDGQEAFDKVKELTSKGENYNMIFMDVQMP-KVDGLLSTKMIRRDLGY 80 (133)
T ss_dssp EEEECSCHHH-HHHHHHHHHHTTCC--CEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCS-SSCHHHHHHHHHHHSCC
T ss_pred EEEEcCCHHH-HHHHHHHHHHcCCc--eEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCC-CCChHHHHHHHHhhcCC
Confidence 4567766543 56677777766654 36555555555555443 58988754332 2346777777752
Q ss_pred CCCEEe-cCCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHhC
Q 001292 526 GIPVIT-PDFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFISN 568 (1106)
Q Consensus 526 G~PVIA-SD~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsD 568 (1106)
.+|||. |.... ..+.+..|..+++..|-+.++|.++|..++..
T Consensus 81 ~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 127 (133)
T 2r25_B 81 TSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAA 127 (133)
T ss_dssp CSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTT
T ss_pred CCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 468775 33333 34556678899999999999999999988753
No 93
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=71.27 E-value=38 Score=30.61 Aligned_cols=108 Identities=12% Similarity=0.042 Sum_probs=68.3
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHh-----CCCE
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF-----GIPV 529 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~-----G~PV 529 (1106)
++|+.+.+.. ...++.+.+ .+. .|.......+....+.. .|++++-.... +.-|..+++.+.. .+||
T Consensus 7 ilivdd~~~~-~~~l~~~l~-~~~---~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~-~~~g~~~~~~l~~~~~~~~~pi 80 (133)
T 3nhm_A 7 VLIVENSWTM-RETLRLLLS-GEF---DCTTAADGASGLQQALAHPPDVLISDVNMD-GMDGYALCGHFRSEPTLKHIPV 80 (133)
T ss_dssp EEEECSCHHH-HHHHHHHHT-TTS---EEEEESSHHHHHHHHHHSCCSEEEECSSCS-SSCHHHHHHHHHHSTTTTTCCE
T ss_pred EEEEcCCHHH-HHHHHHHHh-CCc---EEEEECCHHHHHHHHhcCCCCEEEEeCCCC-CCCHHHHHHHHHhCCccCCCCE
Confidence 4666665532 344554444 232 46666665666555543 68888765543 3457788877765 6788
Q ss_pred Eec-CC--CCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcc
Q 001292 530 ITP-DF--PIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGK 570 (1106)
Q Consensus 530 IAS-D~--gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpe 570 (1106)
|+- .. ....+.+..|..+++..|-++++|..+|..++....
T Consensus 81 i~~s~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 124 (133)
T 3nhm_A 81 IFVSGYAPRTEGPADQPVPDAYLVKPVKPPVLIAQLHALLARAE 124 (133)
T ss_dssp EEEESCCC-----TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EEEeCCCcHhHHHHhhcCCceEEeccCCHHHHHHHHHHHHhhhc
Confidence 864 22 222455666778899999999999999999987544
No 94
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=71.15 E-value=21 Score=32.76 Aligned_cols=106 Identities=14% Similarity=0.076 Sum_probs=71.1
Q ss_pred CeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHh---CC
Q 001292 453 SFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF---GI 527 (1106)
Q Consensus 453 dikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~---G~ 527 (1106)
..+ ++|+.+.+.. ...++.+.+..|+ .|.......+...++.. .|++|+|. .-|..+++.+.. .+
T Consensus 18 ~~~-ilivdd~~~~-~~~l~~~L~~~g~---~v~~~~~~~~al~~l~~~~~dlvi~~~-----~~g~~~~~~l~~~~~~~ 87 (137)
T 2pln_A 18 SMR-VLLIEKNSVL-GGEIEKGLNVKGF---MADVTESLEDGEYLMDIRNYDLVMVSD-----KNALSFVSRIKEKHSSI 87 (137)
T ss_dssp CSE-EEEECSCHHH-HHHHHHHHHHTTC---EEEEESCHHHHHHHHHHSCCSEEEECS-----TTHHHHHHHHHHHSTTS
T ss_pred CCe-EEEEeCCHHH-HHHHHHHHHHcCc---EEEEeCCHHHHHHHHHcCCCCEEEEcC-----ccHHHHHHHHHhcCCCc
Confidence 345 5667766543 5777777777665 46666666666666554 58888332 336777776653 77
Q ss_pred CEEec-CCC---CchhhhccCCeEEEEcCC-CHHHHHHHHHHHHhC
Q 001292 528 PVITP-DFP---IIKEYVAEGAQVIFFQKD-NPEGLSRAFSLFISN 568 (1106)
Q Consensus 528 PVIAS-D~g---GI~EiV~Dg~nG~LV~~~-D~eeLAeAI~~LLsD 568 (1106)
|||+- ... ...+.+..|..+++..+- +.++|..+|..++..
T Consensus 88 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 88 VVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 133 (137)
T ss_dssp EEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC-
T ss_pred cEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhh
Confidence 88764 332 234556678899999998 999999999988764
No 95
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=70.95 E-value=8.5 Score=35.93 Aligned_cols=111 Identities=9% Similarity=0.102 Sum_probs=71.8
Q ss_pred CeEEEEEEcCCCCccHHHHHHHHHHcC-CCCCcEEEcC-ChhhHHHHH---HHcCeEEEccCCCCCCCcHHHHHHHHh--
Q 001292 453 SFKFVFLCGNSTDGYNDALQEVASRLG-LLEHSVRHYG-FNGDVNGVL---LMADIVLYGSSQVEQGFPSLIVRAMTF-- 525 (1106)
Q Consensus 453 dikfLIIVG~GperY~eeLkeLaeklG-L~d~rV~flG-~~eDL~~Ly---aaADVfV~PS~~EeEGFGlvLLEAMA~-- 525 (1106)
..+ ++|+.+.+.. ...++.+.+..| +. |.... ..+.+..+. ...|++|+--... +.-|..+++.+..
T Consensus 20 ~~~-ilivdd~~~~-~~~l~~~L~~~g~~~---v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~-~~~g~~~~~~l~~~~ 93 (146)
T 4dad_A 20 MIN-ILVASEDASR-LAHLARLVGDAGRYR---VTRTVGRAAQIVQRTDGLDAFDILMIDGAAL-DTAELAAIEKLSRLH 93 (146)
T ss_dssp GCE-EEEECSCHHH-HHHHHHHHHHHCSCE---EEEECCCHHHHTTCHHHHTTCSEEEEECTTC-CHHHHHHHHHHHHHC
T ss_pred CCe-EEEEeCCHHH-HHHHHHHHhhCCCeE---EEEeCCHHHHHHHHHhcCCCCCEEEEeCCCC-CccHHHHHHHHHHhC
Confidence 345 5667766543 577788888777 53 44333 333444444 4579988765442 2335666666543
Q ss_pred -CCCEEec-CCC---CchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCc
Q 001292 526 -GIPVITP-DFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNG 569 (1106)
Q Consensus 526 -G~PVIAS-D~g---GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDp 569 (1106)
.+|||+- ... ...+.+..|..+++..+-++++|..+|..++...
T Consensus 94 ~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 94 PGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp TTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred CCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 6788764 322 2345567788999999999999999999988754
No 96
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=70.81 E-value=26 Score=31.77 Aligned_cols=106 Identities=13% Similarity=0.031 Sum_probs=70.3
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHH-----hCCCE
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMT-----FGIPV 529 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA-----~G~PV 529 (1106)
++++.+.+.. ...++.+.+..|+ .|.......+....+.. .|++++--... +.-|..+++.+. ..+||
T Consensus 5 ILivdd~~~~-~~~l~~~l~~~g~---~v~~~~~~~~al~~l~~~~~dlvllD~~~p-~~~g~~~~~~l~~~~~~~~~pi 79 (122)
T 3gl9_A 5 VLLVDDSAVL-RKIVSFNLKKEGY---EVIEAENGQIALEKLSEFTPDLIVLXIMMP-VMDGFTVLKKLQEKEEWKRIPV 79 (122)
T ss_dssp EEEECSCHHH-HHHHHHHHHHTTC---EEEEESSHHHHHHHHTTBCCSEEEECSCCS-SSCHHHHHHHHHTSTTTTTSCE
T ss_pred EEEEeCCHHH-HHHHHHHHHHCCc---EEEEeCCHHHHHHHHHhcCCCEEEEeccCC-CCcHHHHHHHHHhcccccCCCE
Confidence 4566666542 4666777777665 35555555555555544 58888754442 245788888774 35788
Q ss_pred Eec-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 530 ITP-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 530 IAS-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
|+- .... ..+.+..|..+++..|-++++|..+|..++.
T Consensus 80 i~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 80 IVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 763 3332 3345567889999999999999999998874
No 97
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=70.28 E-value=59 Score=30.37 Aligned_cols=108 Identities=9% Similarity=0.003 Sum_probs=69.4
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH---cCeEEEccCCCCCCCcHHHHHHHHh---CCCEE
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM---ADIVLYGSSQVEQGFPSLIVRAMTF---GIPVI 530 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa---ADVfV~PS~~EeEGFGlvLLEAMA~---G~PVI 530 (1106)
++|+.+.+.. ...++.+.+. |+ .|.......+....+.. .|++|+-.... +.-|..+++.+.. .+|||
T Consensus 7 ILivdd~~~~-~~~l~~~L~~-~~---~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~-~~~g~~~~~~l~~~~~~~~ii 80 (151)
T 3kcn_A 7 ILLVDDDYSL-LNTLKRNLSF-DF---EVTTCESGPEALACIKKSDPFSVIMVDMRMP-GMEGTEVIQKARLISPNSVYL 80 (151)
T ss_dssp EEEECSCHHH-HHHHHHHHTT-TS---EEEEESSHHHHHHHHHHSCCCSEEEEESCCS-SSCHHHHHHHHHHHCSSCEEE
T ss_pred EEEEeCCHHH-HHHHHHHhcc-Cc---eEEEeCCHHHHHHHHHcCCCCCEEEEeCCCC-CCcHHHHHHHHHhcCCCcEEE
Confidence 5667766542 3455555542 32 56666666666666654 38888765443 2456777776543 57777
Q ss_pred ec-CCCC---chhhhccC-CeEEEEcCCCHHHHHHHHHHHHhCcc
Q 001292 531 TP-DFPI---IKEYVAEG-AQVIFFQKDNPEGLSRAFSLFISNGK 570 (1106)
Q Consensus 531 AS-D~gG---I~EiV~Dg-~nG~LV~~~D~eeLAeAI~~LLsDpe 570 (1106)
+- .... ..+.+..| ..+++..|-+.++|..+|..++....
T Consensus 81 ~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~ 125 (151)
T 3kcn_A 81 MLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYD 125 (151)
T ss_dssp EEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 53 3222 34556667 78999999999999999999987443
No 98
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=69.72 E-value=34 Score=31.16 Aligned_cols=111 Identities=12% Similarity=0.019 Sum_probs=71.9
Q ss_pred CeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEE-EcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHH--hCC
Q 001292 453 SFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVR-HYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMT--FGI 527 (1106)
Q Consensus 453 dikfLIIVG~GperY~eeLkeLaeklGL~d~rV~-flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA--~G~ 527 (1106)
..+ ++|+.+.+.. ...++...+..|+. |. ......+...++.. .|++|+--...++.-|..+++.+. ..+
T Consensus 9 ~~~-iLivdd~~~~-~~~l~~~L~~~g~~---v~~~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~ 83 (140)
T 3cg0_A 9 LPG-VLIVEDGRLA-AATLRIQLESLGYD---VLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAGCNL 83 (140)
T ss_dssp CCE-EEEECCBHHH-HHHHHHHHHHHTCE---EEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHHSCC
T ss_pred Cce-EEEEECCHHH-HHHHHHHHHHCCCe---eEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhCCCC
Confidence 345 5666666542 57777777777764 55 35555555555543 688887644310134566666654 478
Q ss_pred CEEec-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHhC
Q 001292 528 PVITP-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFISN 568 (1106)
Q Consensus 528 PVIAS-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsD 568 (1106)
|||+- .... ..+.+..|..+++..+-+.++|..+|..++..
T Consensus 84 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 128 (140)
T 3cg0_A 84 PIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHK 128 (140)
T ss_dssp CEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 88864 3332 33556678889999999999999999998763
No 99
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=69.57 E-value=22 Score=33.41 Aligned_cols=110 Identities=12% Similarity=0.115 Sum_probs=71.5
Q ss_pred CeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHH---hCC
Q 001292 453 SFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMT---FGI 527 (1106)
Q Consensus 453 dikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA---~G~ 527 (1106)
..+ ++|+.+.+.. ...+....+..|+ .|.......+...++.. .|++|+-.... +.-|..+++.+. ..+
T Consensus 7 ~~~-iLivdd~~~~-~~~l~~~L~~~g~---~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~-~~~g~~~~~~l~~~~~~~ 80 (154)
T 2rjn_A 7 NYT-VMLVDDEQPI-LNSLKRLIKRLGC---NIITFTSPLDALEALKGTSVQLVISDMRMP-EMGGEVFLEQVAKSYPDI 80 (154)
T ss_dssp CCE-EEEECSCHHH-HHHHHHHHHTTTC---EEEEESCHHHHHHHHTTSCCSEEEEESSCS-SSCHHHHHHHHHHHCTTS
T ss_pred CCe-EEEEcCCHHH-HHHHHHHHHHcCC---eEEEeCCHHHHHHHHhcCCCCEEEEecCCC-CCCHHHHHHHHHHhCCCC
Confidence 345 5666666543 5667777776664 46666666666666654 58888765443 234667777664 367
Q ss_pred CEEec-CCCC---chhhhccC-CeEEEEcCCCHHHHHHHHHHHHhC
Q 001292 528 PVITP-DFPI---IKEYVAEG-AQVIFFQKDNPEGLSRAFSLFISN 568 (1106)
Q Consensus 528 PVIAS-D~gG---I~EiV~Dg-~nG~LV~~~D~eeLAeAI~~LLsD 568 (1106)
|||+- .... ..+.+..+ ..+++..|-+.++|..+|..++..
T Consensus 81 ~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~ 126 (154)
T 2rjn_A 81 ERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQL 126 (154)
T ss_dssp EEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHH
Confidence 87764 3322 33445555 789999999999999999988763
No 100
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=69.49 E-value=20 Score=32.77 Aligned_cols=110 Identities=14% Similarity=0.119 Sum_probs=73.2
Q ss_pred eEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHh---CCC
Q 001292 454 FKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF---GIP 528 (1106)
Q Consensus 454 ikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~---G~P 528 (1106)
++ ++|+.+.+.. ...++.+.+..+. .|.......+....+.. .|++|+-.... +.-|..+++.+.. .+|
T Consensus 8 ~~-ilivdd~~~~-~~~l~~~L~~~~~---~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~-~~~g~~~~~~l~~~~~~~~ 81 (137)
T 3hdg_A 8 LK-ILIVEDDTDA-REWLSTIISNHFP---EVWSAGDGEEGERLFGLHAPDVIITDIRMP-KLGGLEMLDRIKAGGAKPY 81 (137)
T ss_dssp CC-EEEECSCHHH-HHHHHHHHHTTCS---CEEEESSHHHHHHHHHHHCCSEEEECSSCS-SSCHHHHHHHHHHTTCCCE
T ss_pred cE-EEEEeCCHHH-HHHHHHHHHhcCc---EEEEECCHHHHHHHHhccCCCEEEEeCCCC-CCCHHHHHHHHHhcCCCCc
Confidence 35 4667666542 5667777775433 46666666665555543 68888765543 3557777776654 577
Q ss_pred EEec-CCC---CchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCc
Q 001292 529 VITP-DFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNG 569 (1106)
Q Consensus 529 VIAS-D~g---GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDp 569 (1106)
||+- ... ...+.+..|..+++..|-++++|.++|.++++..
T Consensus 82 ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (137)
T 3hdg_A 82 VIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIK 126 (137)
T ss_dssp EEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHH
T ss_pred EEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHH
Confidence 8764 222 2345566788999999999999999999998643
No 101
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=68.74 E-value=34 Score=30.32 Aligned_cols=108 Identities=11% Similarity=0.066 Sum_probs=71.6
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHH-----hCCCE
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMT-----FGIPV 529 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA-----~G~PV 529 (1106)
++++.+.+.. ...++...+..|+ .|.......+....+.. .|++++-....+..-|..+++.+. ..+||
T Consensus 8 ilivdd~~~~-~~~l~~~L~~~g~---~v~~~~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~i 83 (127)
T 2gkg_A 8 ILIVESDTAL-SATLRSALEGRGF---TVDETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPI 83 (127)
T ss_dssp EEEECSCHHH-HHHHHHHHHHHTC---EEEEECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCE
T ss_pred EEEEeCCHHH-HHHHHHHHHhcCc---eEEEecCHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCE
Confidence 4566666542 5677777777776 35555555555555543 688887543310134677787775 46888
Q ss_pred EecCCCC----chhhhccCCeEEEEcCCCHHHHHHHHHHHHhCc
Q 001292 530 ITPDFPI----IKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNG 569 (1106)
Q Consensus 530 IASD~gG----I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDp 569 (1106)
|+. ... ..+.+..|..+++..|-++++|..+|..++..+
T Consensus 84 i~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 126 (127)
T 2gkg_A 84 VII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIGFP 126 (127)
T ss_dssp EEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCCC
T ss_pred EEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHcCC
Confidence 876 322 234566677899999999999999999988754
No 102
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=68.25 E-value=61 Score=29.33 Aligned_cols=110 Identities=9% Similarity=0.030 Sum_probs=70.5
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHH---hCCCEEe
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMT---FGIPVIT 531 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA---~G~PVIA 531 (1106)
++|+.+.+.. ...+.......|+ .|.......+....+. ..|++++-.... ..-|..+++.+. ..+|||.
T Consensus 6 ilivdd~~~~-~~~l~~~L~~~g~---~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~-~~~g~~~~~~l~~~~~~~~ii~ 80 (136)
T 1mvo_A 6 ILVVDDEESI-VTLLQYNLERSGY---DVITASDGEEALKKAETEKPDLIVLDVMLP-KLDGIEVCKQLRQQKLMFPILM 80 (136)
T ss_dssp EEEECSCHHH-HHHHHHHHHHTTC---EEEEESSHHHHHHHHHHHCCSEEEEESSCS-SSCHHHHHHHHHHTTCCCCEEE
T ss_pred EEEEECCHHH-HHHHHHHHHHCCc---EEEEecCHHHHHHHHhhcCCCEEEEecCCC-CCCHHHHHHHHHcCCCCCCEEE
Confidence 5667766542 4666777776665 3555555555554444 368888754442 234677777664 3577775
Q ss_pred c-CCC---CchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCccc
Q 001292 532 P-DFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKL 571 (1106)
Q Consensus 532 S-D~g---GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpel 571 (1106)
- ... .....+..|..+++..|-+.++|..+|..++.....
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 124 (136)
T 1mvo_A 81 LTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEI 124 (136)
T ss_dssp EECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC--
T ss_pred EECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhhcc
Confidence 3 222 234556778899999999999999999998876543
No 103
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=67.95 E-value=22 Score=32.27 Aligned_cols=110 Identities=11% Similarity=0.035 Sum_probs=68.8
Q ss_pred eEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHh---CCC
Q 001292 454 FKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF---GIP 528 (1106)
Q Consensus 454 ikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~---G~P 528 (1106)
.+ ++|+.+.+.. ...++++.++.|.. |.......+....+.. .|++++-.... +.-|..+++.+.. .+|
T Consensus 8 ~~-ilivdd~~~~-~~~l~~~L~~~g~~---v~~~~~~~~a~~~l~~~~~dlvi~d~~l~-~~~g~~~~~~l~~~~~~~~ 81 (130)
T 3eod_A 8 KQ-ILIVEDEQVF-RSLLDSWFSSLGAT---TVLAADGVDALELLGGFTPDLMICDIAMP-RMNGLKLLEHIRNRGDQTP 81 (130)
T ss_dssp CE-EEEECSCHHH-HHHHHHHHHHTTCE---EEEESCHHHHHHHHTTCCCSEEEECCC------CHHHHHHHHHTTCCCC
T ss_pred Ce-EEEEeCCHHH-HHHHHHHHHhCCce---EEEeCCHHHHHHHHhcCCCCEEEEecCCC-CCCHHHHHHHHHhcCCCCC
Confidence 35 5667766543 57778888877653 5555555566666543 68888765443 3457777777654 477
Q ss_pred EEec-CCCC---chhhhccCCeEEEEcCC-CHHHHHHHHHHHHhCc
Q 001292 529 VITP-DFPI---IKEYVAEGAQVIFFQKD-NPEGLSRAFSLFISNG 569 (1106)
Q Consensus 529 VIAS-D~gG---I~EiV~Dg~nG~LV~~~-D~eeLAeAI~~LLsDp 569 (1106)
||.- .... ..+.+..|..+++..|- ++++|.++|..++...
T Consensus 82 ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 82 VLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp EEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred EEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 7763 3222 34556678899999887 8999999999988643
No 104
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=67.89 E-value=49 Score=30.40 Aligned_cols=110 Identities=10% Similarity=0.020 Sum_probs=69.8
Q ss_pred eEEEEEEcCCCCccHHHHHHHHHHc-CCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHh---CC
Q 001292 454 FKFVFLCGNSTDGYNDALQEVASRL-GLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF---GI 527 (1106)
Q Consensus 454 ikfLIIVG~GperY~eeLkeLaekl-GL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~---G~ 527 (1106)
.+ ++|+.+.+.. ...+....+.. ++. .|.......+....+.. .|++|+-.... +.-|..+++.+.. ..
T Consensus 10 ~~-iLivdd~~~~-~~~l~~~L~~~~~~~--~v~~~~~~~~al~~l~~~~~dlvi~d~~l~-~~~g~~~~~~l~~~~~~~ 84 (143)
T 2qv0_A 10 MK-VIIVEDEFLA-QQELSWLINTHSQME--IVGSFDDGLDVLKFLQHNKVDAIFLDINIP-SLDGVLLAQNISQFAHKP 84 (143)
T ss_dssp CE-EEEECSCHHH-HHHHHHHHHHHSCCE--EEEEESCHHHHHHHHHHCCCSEEEECSSCS-SSCHHHHHHHHTTSTTCC
T ss_pred eE-EEEEcCCHHH-HHHHHHHHHhCCCce--EEEEeCCHHHHHHHHHhCCCCEEEEecCCC-CCCHHHHHHHHHccCCCc
Confidence 45 5667766542 46667766655 332 23344455555555544 68888765543 2457777877754 34
Q ss_pred CEEe-cCC-CCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhC
Q 001292 528 PVIT-PDF-PIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISN 568 (1106)
Q Consensus 528 PVIA-SD~-gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsD 568 (1106)
|||. +.. ....+.+..|..+++..+-+.++|..+|..++..
T Consensus 85 ~ii~~s~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (143)
T 2qv0_A 85 FIVFITAWKEHAVEAFELEAFDYILKPYQESRIINMLQKLTTA 127 (143)
T ss_dssp EEEEEESCCTTHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 4543 332 2344556678899999999999999999988763
No 105
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=67.70 E-value=42 Score=30.21 Aligned_cols=107 Identities=13% Similarity=0.075 Sum_probs=68.0
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH---cCeEEEccCCCCC-CCcHHHHHHHHh---CCCE
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM---ADIVLYGSSQVEQ-GFPSLIVRAMTF---GIPV 529 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa---ADVfV~PS~~EeE-GFGlvLLEAMA~---G~PV 529 (1106)
++|+.+.+.. ...++...+..|+ .|.......+....+.. .|++++--... + .-|..+++.+.. .+||
T Consensus 8 ilivdd~~~~-~~~l~~~L~~~g~---~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~-~~~~g~~~~~~l~~~~~~~~i 82 (132)
T 2rdm_A 8 ILLADDEAIL-LLDFESTLTDAGF---LVTAVSSGAKAIEMLKSGAAIDGVVTDIRFC-QPPDGWQVARVAREIDPNMPI 82 (132)
T ss_dssp EEEECSSHHH-HHHHHHHHHHTTC---EEEEESSHHHHHHHHHTTCCCCEEEEESCCS-SSSCHHHHHHHHHHHCTTCCE
T ss_pred EEEEcCcHHH-HHHHHHHHHHcCC---EEEEECCHHHHHHHHHcCCCCCEEEEeeeCC-CCCCHHHHHHHHHhcCCCCCE
Confidence 4666666542 5667777776665 35555555666666553 68888765442 2 346667776643 6888
Q ss_pred Eec-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcc
Q 001292 530 ITP-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGK 570 (1106)
Q Consensus 530 IAS-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpe 570 (1106)
|.- .... ..+.+.. .+++..|-++++|..+|.+++....
T Consensus 83 i~~s~~~~~~~~~~~~~~--~~~l~kP~~~~~l~~~i~~~~~~~~ 125 (132)
T 2rdm_A 83 VYISGHAALEWASNGVPD--SIILEKPFTSAQLITAVSQLLNARE 125 (132)
T ss_dssp EEEESSCCTTHHHHSCTT--CEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred EEEeCCccHHHHHhhcCC--cceEeCCCCHHHHHHHHHHHHhcCC
Confidence 764 3222 2233333 3688889999999999999987655
No 106
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=67.35 E-value=30 Score=31.81 Aligned_cols=107 Identities=10% Similarity=0.060 Sum_probs=65.7
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHH-----hCCCE
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMT-----FGIPV 529 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA-----~G~PV 529 (1106)
++|+.+.+.. ...++++.+.. - .|.......+....+.. .|++|+-.... +.-|..+++.+. ..+||
T Consensus 6 iLivdd~~~~-~~~l~~~l~~~---~-~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~-~~~g~~~~~~l~~~~~~~~~~i 79 (140)
T 3n53_A 6 ILIIDQQDFS-RIELKNFLDSE---Y-LVIESKNEKEALEQIDHHHPDLVILDMDII-GENSPNLCLKLKRSKGLKNVPL 79 (140)
T ss_dssp EEEECSCHHH-HHHHHHHHTTT---S-EEEEESSHHHHHHHHHHHCCSEEEEETTC-------CHHHHHHTSTTCTTCCE
T ss_pred EEEEeCCHHH-HHHHHHHHHhc---c-eEEEeCCHHHHHHHHhcCCCCEEEEeCCCC-CCcHHHHHHHHHcCcccCCCCE
Confidence 4566665542 45556655543 2 56666655565555543 58888765442 244666777665 46788
Q ss_pred Eec-C---CCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCc
Q 001292 530 ITP-D---FPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNG 569 (1106)
Q Consensus 530 IAS-D---~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDp 569 (1106)
|+- . .....+.+..|..+++..|-++++|..+|..++...
T Consensus 80 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 123 (140)
T 3n53_A 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQ 123 (140)
T ss_dssp EEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhH
Confidence 763 2 233455666788899999999999999999988643
No 107
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=66.70 E-value=35 Score=31.17 Aligned_cols=106 Identities=12% Similarity=0.114 Sum_probs=69.5
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHH---hCCCEEe
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMT---FGIPVIT 531 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA---~G~PVIA 531 (1106)
++|+.+.+.. ...++.+.+..|+ .|.......+....+.. .|++++--... ..-|..+++.+. .++|||.
T Consensus 6 Ilivdd~~~~-~~~l~~~L~~~g~---~v~~~~~~~~al~~~~~~~~dlvl~D~~l~-~~~g~~~~~~l~~~~~~~~ii~ 80 (132)
T 3crn_A 6 ILIVDDDTAI-LDSTKQILEFEGY---EVEIAATAGEGLAKIENEFFNLALFXIKLP-DMEGTELLEKAHKLRPGMKKIM 80 (132)
T ss_dssp EEEECSCHHH-HHHHHHHHHHTTC---EEEEESSHHHHHHHHHHSCCSEEEECSBCS-SSBHHHHHHHHHHHCTTSEEEE
T ss_pred EEEEeCCHHH-HHHHHHHHHHCCc---eEEEeCCHHHHHHHHhcCCCCEEEEecCCC-CCchHHHHHHHHhhCCCCcEEE
Confidence 5667776643 5667777776665 35555555555555543 68888754442 234677777664 3578775
Q ss_pred c-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 532 P-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 532 S-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
- .... ..+.+..|..+++..|-+.++|..+|..++.
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 120 (132)
T 3crn_A 81 VTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLD 120 (132)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHh
Confidence 3 3332 3455667889999999999999999988875
No 108
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=66.46 E-value=71 Score=31.64 Aligned_cols=108 Identities=14% Similarity=0.112 Sum_probs=70.0
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEE-EcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHh--CCCEEe
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVR-HYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF--GIPVIT 531 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~-flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~--G~PVIA 531 (1106)
++|+.+.+.. ...+.......|+. |. ......+...++.. .|++|+--... ..-|..+++.+.. ..|||.
T Consensus 16 iLivdd~~~~-~~~l~~~L~~~g~~---v~~~~~~~~~al~~~~~~~~dlvi~D~~~p-~~~g~~~~~~l~~~~~~pii~ 90 (205)
T 1s8n_A 16 VLIAEDEALI-RMDLAEMLREEGYE---IVGEAGDGQEAVELAELHKPDLVIMDVKMP-RRDGIDAASEIASKRIAPIVV 90 (205)
T ss_dssp EEEECSSHHH-HHHHHHHHHHTTCE---EEEEESSHHHHHHHHHHHCCSEEEEESSCS-SSCHHHHHHHHHHTTCSCEEE
T ss_pred EEEEECCHHH-HHHHHHHHHHCCCE---EEEEeCCHHHHHHHHhhcCCCEEEEeCCCC-CCChHHHHHHHHhcCCCCEEE
Confidence 5667776643 56777777766653 44 44444555554443 68888754442 2456777777653 357765
Q ss_pred c-CCC---CchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCc
Q 001292 532 P-DFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNG 569 (1106)
Q Consensus 532 S-D~g---GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDp 569 (1106)
- ... ...+.+..|..+++..|-++++|..+|..++...
T Consensus 91 lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 132 (205)
T 1s8n_A 91 LTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRF 132 (205)
T ss_dssp EEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 3 222 2345566788999999999999999999988643
No 109
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=66.43 E-value=27 Score=31.89 Aligned_cols=110 Identities=14% Similarity=0.100 Sum_probs=70.5
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCC----CCCcHHHHHHHH---hCC
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVE----QGFPSLIVRAMT---FGI 527 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~Ee----EGFGlvLLEAMA---~G~ 527 (1106)
++|+.+.+.. ...++...+..|+ .|.......+...++.. .|++|+-....+ +.-|..+++.+. ..+
T Consensus 6 ilivdd~~~~-~~~l~~~L~~~g~---~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~ 81 (140)
T 2qr3_A 6 IIIVDDNKGV-LTAVQLLLKNHFS---KVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDL 81 (140)
T ss_dssp EEEECSCHHH-HHHHHHHHTTTSS---EEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTC
T ss_pred EEEEeCCHHH-HHHHHHHHHhCCc---EEEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCC
Confidence 4666666542 4666666665554 46666666666666654 578776543310 134666676654 368
Q ss_pred CEEec-CCC---CchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcc
Q 001292 528 PVITP-DFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGK 570 (1106)
Q Consensus 528 PVIAS-D~g---GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpe 570 (1106)
|||+- ... ...+.+..|..+++..+-+.++|..+|..++....
T Consensus 82 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~ 128 (140)
T 2qr3_A 82 PVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQAK 128 (140)
T ss_dssp CEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC-
T ss_pred CEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhcc
Confidence 88764 222 23455666888999999999999999999987654
No 110
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=66.30 E-value=48 Score=29.31 Aligned_cols=106 Identities=12% Similarity=0.059 Sum_probs=67.6
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHh---CCCEEe
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF---GIPVIT 531 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~---G~PVIA 531 (1106)
++++.+.+.. ...++...+..|. .|.......+...++.. .|++++--... ..-|..+++.+.- .+|||.
T Consensus 3 ilivdd~~~~-~~~l~~~l~~~g~---~v~~~~~~~~a~~~~~~~~~dlil~D~~l~-~~~g~~~~~~l~~~~~~~~ii~ 77 (121)
T 2pl1_A 3 VLVVEDNALL-RHHLKVQIQDAGH---QVDDAEDAKEADYYLNEHIPDIAIVDLGLP-DEDGLSLIRRWRSNDVSLPILV 77 (121)
T ss_dssp EEEECSCHHH-HHHHHHHHHHTTC---EEEEESSHHHHHHHHHHSCCSEEEECSCCS-SSCHHHHHHHHHHTTCCSCEEE
T ss_pred EEEEeCcHHH-HHHHHHHHhhcCC---EEEEeCCHHHHHHHHhccCCCEEEEecCCC-CCCHHHHHHHHHhcCCCCCEEE
Confidence 4556665542 4666666666554 35555555555555543 58888754332 2346777877753 577775
Q ss_pred c-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 532 P-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 532 S-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
- .... ..+.+..|..+++..|-++++|..+|..++.
T Consensus 78 ~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 117 (121)
T 2pl1_A 78 LTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 (121)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHH
Confidence 3 3332 3455667888999999999999999988764
No 111
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=66.06 E-value=44 Score=29.46 Aligned_cols=107 Identities=8% Similarity=0.019 Sum_probs=67.0
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHH--hCCCEEec
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMT--FGIPVITP 532 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA--~G~PVIAS 532 (1106)
++++.+.+.. ...++...+..|+ .|.......+....+. ..|++++--... +.-|..+++.+. ..+|||..
T Consensus 4 ilivdd~~~~-~~~l~~~l~~~~~---~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~-~~~g~~~~~~l~~~~~~~ii~~ 78 (120)
T 2a9o_A 4 ILIVDDEKPI-SDIIKFNMTKEGY---EVVTAFNGREALEQFEAEQPDIIILDLMLP-EIDGLEVAKTIRKTSSVPILML 78 (120)
T ss_dssp EEEECSCHHH-HHHHHHHHHHTTC---EEEEESSHHHHHHHHHHHCCSEEEECSSCS-SSCHHHHHHHHHHHCCCCEEEE
T ss_pred EEEEcCCHHH-HHHHHHHHHhcCc---EEEEecCHHHHHHHHHhCCCCEEEEeccCC-CCCHHHHHHHHHhCCCCCEEEE
Confidence 4566666542 4666666666654 3544444444444443 368888754442 234666776653 56888764
Q ss_pred -CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHhC
Q 001292 533 -DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFISN 568 (1106)
Q Consensus 533 -D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsD 568 (1106)
.... ....+..|..+++..|-+.++|..+|..++..
T Consensus 79 s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 79 SAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred ecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 3322 23445668889999999999999999887653
No 112
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=65.71 E-value=39 Score=30.36 Aligned_cols=108 Identities=9% Similarity=0.052 Sum_probs=70.5
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHh-----CCCE
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF-----GIPV 529 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~-----G~PV 529 (1106)
++|+.+.+.. ...++.+.++.|+ .|.......+....+.. .|++++-.... +.-|..+++.+.. .+||
T Consensus 6 ilivdd~~~~-~~~l~~~L~~~g~---~v~~~~~~~~a~~~l~~~~~dlii~D~~l~-~~~g~~~~~~l~~~~~~~~~~i 80 (127)
T 3i42_A 6 ALIVEDYQAA-AETFKELLEMLGF---QADYVMSGTDALHAMSTRGYDAVFIDLNLP-DTSGLALVKQLRALPMEKTSKF 80 (127)
T ss_dssp EEEECSCHHH-HHHHHHHHHHTTE---EEEEESSHHHHHHHHHHSCCSEEEEESBCS-SSBHHHHHHHHHHSCCSSCCEE
T ss_pred EEEEcCCHHH-HHHHHHHHHHcCC---CEEEECCHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHhhhccCCCCE
Confidence 5666666542 5777888887765 36566655666666543 58888765443 3557788887754 4788
Q ss_pred Eec-CCC--CchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCc
Q 001292 530 ITP-DFP--IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNG 569 (1106)
Q Consensus 530 IAS-D~g--GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDp 569 (1106)
|+. ... ...+.+..|..+++..|-++++|.+++.......
T Consensus 81 i~~s~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 81 VAVSGFAKNDLGKEACELFDFYLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp EEEECC-CTTCCHHHHHHCSEEEESSCCHHHHHHHHHHHC---
T ss_pred EEEECCcchhHHHHHHHhhHHheeCCCCHHHHHHHHHHhhccC
Confidence 763 221 1144555677889999999999999999876644
No 113
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=65.20 E-value=17 Score=31.77 Aligned_cols=106 Identities=12% Similarity=0.118 Sum_probs=68.7
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHH-----hCCCE
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMT-----FGIPV 529 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA-----~G~PV 529 (1106)
++++.+.+.. ...+....+..|+ .|.......+....+.. .|++++-.... +.-|..+++.+. ..+||
T Consensus 4 iliv~~~~~~-~~~l~~~l~~~g~---~v~~~~~~~~~~~~l~~~~~dlii~d~~~~-~~~~~~~~~~l~~~~~~~~~~i 78 (119)
T 2j48_A 4 ILLLEEEDEA-ATVVCEMLTAAGF---KVIWLVDGSTALDQLDLLQPIVILMAWPPP-DQSCLLLLQHLREHQADPHPPL 78 (119)
T ss_dssp EEEECCCHHH-HHHHHHHHHHTTC---EEEEESCHHHHHHHHHHHCCSEEEEECSTT-CCTHHHHHHHHHHTCCCSSCCC
T ss_pred EEEEeCCHHH-HHHHHHHHHhCCc---EEEEecCHHHHHHHHHhcCCCEEEEecCCC-CCCHHHHHHHHHhccccCCCCE
Confidence 4566666543 5677777776665 36656655555555443 68888765443 245677888776 45777
Q ss_pred Eec-CCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 530 ITP-DFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 530 IAS-D~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
|+- +.....+.+..|..+++..|-+.++|..+|..++.
T Consensus 79 i~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 79 VLFLGEPPVDPLLTAQASAILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp EEEESSCCSSHHHHHHCSEECSSCSTTHHHHHHHHTTCC
T ss_pred EEEeCCCCchhhhhcCHHHhccCCCCHHHHHHHHHHHhc
Confidence 753 32222255666778888888899999999987654
No 114
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=65.09 E-value=29 Score=32.40 Aligned_cols=109 Identities=12% Similarity=0.083 Sum_probs=68.7
Q ss_pred eEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHH-------
Q 001292 454 FKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMT------- 524 (1106)
Q Consensus 454 ikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA------- 524 (1106)
.+ ++|+.+.+.. ...++.+.++.|. .|......++....+.. .|++++--... +.-|..+++.+.
T Consensus 15 ~~-iLivdd~~~~-~~~l~~~L~~~g~---~v~~~~~~~~al~~~~~~~~dlvl~D~~mp-~~~g~~~~~~lr~~~~~~~ 88 (143)
T 3m6m_D 15 MR-MLVADDHEAN-RMVLQRLLEKAGH---KVLCVNGAEQVLDAMAEEDYDAVIVDLHMP-GMNGLDMLKQLRVMQASGM 88 (143)
T ss_dssp CE-EEEECSSHHH-HHHHHHHHHC--C---EEEEESSHHHHHHHHHHSCCSEEEEESCCS-SSCHHHHHHHHHHHHHTTC
T ss_pred ce-EEEEeCCHHH-HHHHHHHHHHcCC---eEEEeCCHHHHHHHHhcCCCCEEEEeCCCC-CCCHHHHHHHHHhchhccC
Confidence 45 5667766542 5667777776654 35555555565555554 68888754432 244777887764
Q ss_pred hCCCEEecCC-CC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHhC
Q 001292 525 FGIPVITPDF-PI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFISN 568 (1106)
Q Consensus 525 ~G~PVIASD~-gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsD 568 (1106)
-.+|||+.-. .. ..+.+..|..+++..|-+.++|.++|..+...
T Consensus 89 ~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 89 RYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp CCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 1368876422 22 33455668899999999999999999988653
No 115
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=65.09 E-value=30 Score=30.78 Aligned_cols=106 Identities=11% Similarity=0.061 Sum_probs=68.5
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHH--hCCCEEec
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMT--FGIPVITP 532 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA--~G~PVIAS 532 (1106)
++|+.+.+.. ...++...+..|+ .|.......+...++.. .|++++--... +.-|..+++.+. ..+|||.-
T Consensus 5 ilivdd~~~~-~~~l~~~L~~~~~---~v~~~~~~~~~~~~~~~~~~dlvi~d~~l~-~~~g~~~~~~l~~~~~~~ii~~ 79 (122)
T 1zgz_A 5 IVIVEDEPVT-QARLQSYFTQEGY---TVSVTASGAGLREIMQNQSVDLILLDINLP-DENGLMLTRALRERSTVGIILV 79 (122)
T ss_dssp EEEECSSHHH-HHHHHHHHHHTTC---EEEEESSHHHHHHHHHHSCCSEEEEESCCS-SSCHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEECCHHH-HHHHHHHHHHCCC---eEEEecCHHHHHHHHhcCCCCEEEEeCCCC-CCChHHHHHHHHhcCCCCEEEE
Confidence 4566666542 5667777776664 35555555565555554 68888754442 234677777775 35777653
Q ss_pred -CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 533 -DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 533 -D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
.... ..+.+..|..+++..|-+.++|..+|..++.
T Consensus 80 s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 118 (122)
T 1zgz_A 80 TGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW 118 (122)
T ss_dssp ESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred ECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHH
Confidence 3332 2345566889999999999999999988764
No 116
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=64.96 E-value=63 Score=32.50 Aligned_cols=108 Identities=12% Similarity=0.019 Sum_probs=71.0
Q ss_pred eEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHH---hCCC
Q 001292 454 FKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMT---FGIP 528 (1106)
Q Consensus 454 ikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA---~G~P 528 (1106)
.+ ++|+.+.+.. ...+....+..|+ .|.......+....+.. .|++++--... +.-|..+++.+. ..+|
T Consensus 8 ~~-ilivdd~~~~-~~~l~~~L~~~g~---~v~~~~~~~~a~~~~~~~~~dlvllD~~l~-~~~g~~~~~~l~~~~~~~~ 81 (233)
T 1ys7_A 8 PR-VLVVDDDSDV-LASLERGLRLSGF---EVATAVDGAEALRSATENRPDAIVLDINMP-VLDGVSVVTALRAMDNDVP 81 (233)
T ss_dssp CE-EEEECSCHHH-HHHHHHHHHHTTC---EEEEESSHHHHHHHHHHSCCSEEEEESSCS-SSCHHHHHHHHHHTTCCCC
T ss_pred Ce-EEEEeCCHHH-HHHHHHHHHhCCC---EEEEECCHHHHHHHHHhCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCCCC
Confidence 35 5667776643 5667777776665 35555555555555543 68888754442 245777777765 3688
Q ss_pred EEec-C---CCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 529 VITP-D---FPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 529 VIAS-D---~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
||.- . .....+.+..|..+++..|.++++|..+|..++.
T Consensus 82 ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 124 (233)
T 1ys7_A 82 VCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLR 124 (233)
T ss_dssp EEEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 8864 2 2234566677889999999999999998877653
No 117
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=64.65 E-value=45 Score=32.16 Aligned_cols=110 Identities=11% Similarity=0.074 Sum_probs=72.2
Q ss_pred CeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHH-----h
Q 001292 453 SFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMT-----F 525 (1106)
Q Consensus 453 dikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA-----~ 525 (1106)
+++ ++||-+.+.. ...++.+.+..|+. .|.....-.+...++.. .|++++=-..- +--|.-+++.+- .
T Consensus 12 ~~r-ILiVDD~~~~-r~~l~~~L~~~G~~--~v~~a~~g~~al~~~~~~~~DlillD~~MP-~mdG~el~~~ir~~~~~~ 86 (134)
T 3to5_A 12 NMK-ILIVDDFSTM-RRIVKNLLRDLGFN--NTQEADDGLTALPMLKKGDFDFVVTDWNMP-GMQGIDLLKNIRADEELK 86 (134)
T ss_dssp TCC-EEEECSCHHH-HHHHHHHHHHTTCC--CEEEESSHHHHHHHHHHHCCSEEEEESCCS-SSCHHHHHHHHHHSTTTT
T ss_pred CCE-EEEEeCCHHH-HHHHHHHHHHcCCc--EEEEECCHHHHHHHHHhCCCCEEEEcCCCC-CCCHHHHHHHHHhCCCCC
Confidence 456 4666665543 57778888888886 35544443444444444 58887532221 133788888874 4
Q ss_pred CCCEEec-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 526 GIPVITP-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 526 G~PVIAS-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
.+|||.- ..+. ..+.+..|.++++..|-++++|.++|.++++
T Consensus 87 ~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 87 HLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFE 132 (134)
T ss_dssp TCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC
T ss_pred CCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 6898863 3332 3345567889999999999999999998864
No 118
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=64.56 E-value=29 Score=32.09 Aligned_cols=107 Identities=12% Similarity=0.128 Sum_probs=69.4
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHh--CCCEEec
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF--GIPVITP 532 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~--G~PVIAS 532 (1106)
++|+.+.+.. ...++.+.+..|+ .|.......+...++.. .|++++--... ..-|..+++.+.- .+|||.-
T Consensus 7 Ilivdd~~~~-~~~l~~~L~~~g~---~v~~~~~~~~al~~~~~~~~dlvllD~~l~-~~~g~~l~~~l~~~~~~~ii~l 81 (136)
T 2qzj_A 7 ILIIDGDKDN-CQKLKGFLEEKGI---SIDLAYNCEEAIGKIFSNKYDLIFLEIILS-DGDGWTLCKKIRNVTTCPIVYM 81 (136)
T ss_dssp EEEECSCHHH-HHHHHHHHHTTTC---EEEEESSHHHHHHHHHHCCCSEEEEESEET-TEEHHHHHHHHHTTCCCCEEEE
T ss_pred EEEEcCCHHH-HHHHHHHHHHCCC---EEEEECCHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHccCCCCCEEEE
Confidence 5667776642 5667777765554 35555555555555543 58888654332 1346777777653 5787764
Q ss_pred -CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHhC
Q 001292 533 -DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFISN 568 (1106)
Q Consensus 533 -D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsD 568 (1106)
.... ..+.+..|..+++..|-++++|..+|..++..
T Consensus 82 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 121 (136)
T 2qzj_A 82 TYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRR 121 (136)
T ss_dssp ESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Confidence 3322 34556678899999999999999999888753
No 119
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=64.41 E-value=37 Score=31.38 Aligned_cols=106 Identities=12% Similarity=0.098 Sum_probs=67.7
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHH---hCCCEEe
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMT---FGIPVIT 531 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA---~G~PVIA 531 (1106)
++|+.+.+.. ...++.+.+..|+ .|.......+...++.. .|++++--... ..-|..+++.+. ..+|||.
T Consensus 7 ILivdd~~~~-~~~l~~~L~~~g~---~v~~~~~~~~a~~~l~~~~~dlvllD~~l~-~~~g~~l~~~l~~~~~~~~ii~ 81 (137)
T 3cfy_A 7 VLLVEDSTSL-AILYKQYVKDEPY---DIFHVETGRDAIQFIERSKPQLIILDLKLP-DMSGEDVLDWINQNDIPTSVII 81 (137)
T ss_dssp EEEECSCTTH-HHHHHHHTTTSSS---EEEEESSHHHHHHHHHHHCCSEEEECSBCS-SSBHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEeCCHHH-HHHHHHHHHhcCc---eEEEeCCHHHHHHHHHhcCCCEEEEecCCC-CCCHHHHHHHHHhcCCCCCEEE
Confidence 5677777653 4556666554443 35555555555555443 68888754442 234677777665 3567765
Q ss_pred c-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 532 P-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 532 S-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
- .... ..+.+..|..+++..|-+.++|..+|..++.
T Consensus 82 ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 121 (137)
T 3cfy_A 82 ATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLK 121 (137)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 3 3332 3455667889999999999999999988765
No 120
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=64.16 E-value=38 Score=30.42 Aligned_cols=106 Identities=11% Similarity=0.054 Sum_probs=68.2
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHH--hCCCEEec
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMT--FGIPVITP 532 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA--~G~PVIAS 532 (1106)
++|+.+.+.. ...++...++.|+ .|.......+....+.. .|++++--... +.-|..+++.+. ..+|||.-
T Consensus 5 ilivdd~~~~-~~~l~~~L~~~g~---~v~~~~~~~~al~~~~~~~~dlii~D~~~p-~~~g~~~~~~lr~~~~~~ii~~ 79 (120)
T 3f6p_A 5 ILVVDDEKPI-ADILEFNLRKEGY---EVHCAHDGNEAVEMVEELQPDLILLDIMLP-NKDGVEVCREVRKKYDMPIIML 79 (120)
T ss_dssp EEEECSCHHH-HHHHHHHHHHTTC---EEEEESSHHHHHHHHHTTCCSEEEEETTST-TTHHHHHHHHHHTTCCSCEEEE
T ss_pred EEEEECCHHH-HHHHHHHHHhCCE---EEEEeCCHHHHHHHHhhCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCCCEEEE
Confidence 4666666542 4666777776665 35555555555555543 68888754432 234666776654 36788763
Q ss_pred -CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 533 -DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 533 -D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
.... ..+.+..|..+++..|-++++|..+|..++.
T Consensus 80 t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 80 TAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLR 118 (120)
T ss_dssp EESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred ECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHh
Confidence 2222 2345667889999999999999999988765
No 121
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=63.72 E-value=21 Score=32.16 Aligned_cols=107 Identities=12% Similarity=0.083 Sum_probs=70.5
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHh-----CCCE
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF-----GIPV 529 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~-----G~PV 529 (1106)
++++.+.+.. ...++...+..|+. .|.......+...++.. .|++++--... +.-|..+++.+.. .+||
T Consensus 9 ilivdd~~~~-~~~l~~~L~~~g~~--~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~-~~~g~~~~~~l~~~~~~~~~~i 84 (129)
T 1p6q_A 9 VLIVDDQVTS-RLLLGDALQQLGFK--QITAAGDGEQGMKIMAQNPHHLVISDFNMP-KMDGLGLLQAVRANPATKKAAF 84 (129)
T ss_dssp EEEECSSHHH-HHHHHHHHHTTTCS--CEECCSSHHHHHHHHHTSCCSEEEECSSSC-SSCHHHHHHHHTTCTTSTTCEE
T ss_pred EEEEcCCHHH-HHHHHHHHHHCCCc--EEEecCCHHHHHHHHHcCCCCEEEEeCCCC-CCCHHHHHHHHhcCccccCCCE
Confidence 4667776643 56677777766663 46655555565555553 68888754442 2346778887743 5777
Q ss_pred Eec-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 530 ITP-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 530 IAS-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
|.- .... ..+.+..|..+++..|-+.++|..+|..++.
T Consensus 85 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 85 IILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFG 126 (129)
T ss_dssp EECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 764 3332 2345566788999999999999999988765
No 122
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=62.97 E-value=10 Score=35.05 Aligned_cols=110 Identities=6% Similarity=-0.037 Sum_probs=72.5
Q ss_pred EEEEcCCCCccHHHHHHHHHH-cCCCCCcEEEcCChhhHHHHHHH---cCeEEEccCCCCCCCcHHHHHHHHh-----CC
Q 001292 457 VFLCGNSTDGYNDALQEVASR-LGLLEHSVRHYGFNGDVNGVLLM---ADIVLYGSSQVEQGFPSLIVRAMTF-----GI 527 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaek-lGL~d~rV~flG~~eDL~~Lyaa---ADVfV~PS~~EeEGFGlvLLEAMA~-----G~ 527 (1106)
++|+.+.+.. ...++.+.+. .|+ .|.......+...++.. .|++|+-....++.-|..+++.+.. .+
T Consensus 7 ilivdd~~~~-~~~l~~~L~~~~~~---~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~ 82 (140)
T 3lua_A 7 VLLIDYFEYE-REKTKIIFDNIGEY---DFIEVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANT 82 (140)
T ss_dssp EEEECSCHHH-HHHHHHHHHHHCCC---EEEEECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTC
T ss_pred EEEEeCCHHH-HHHHHHHHHhccCc---cEEEECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCC
Confidence 5667666543 5677777777 665 35555555566666654 7888875443101236677776654 78
Q ss_pred CEEec-CCC---CchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcc
Q 001292 528 PVITP-DFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGK 570 (1106)
Q Consensus 528 PVIAS-D~g---GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpe 570 (1106)
|||+- ... ...+.+..|..+++..|-++++|..+|..++....
T Consensus 83 ~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (140)
T 3lua_A 83 PVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQ 129 (140)
T ss_dssp CEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC--
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhcc
Confidence 88864 222 23455667889999999999999999999987654
No 123
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=62.73 E-value=26 Score=32.97 Aligned_cols=111 Identities=14% Similarity=0.057 Sum_probs=72.8
Q ss_pred eEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHH---hCCC
Q 001292 454 FKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMT---FGIP 528 (1106)
Q Consensus 454 ikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA---~G~P 528 (1106)
.+ ++|+.+.+.. ...++.+.+..|+ .|.......+....+.. .|++|+-.... +.-|..+++.+. ..+|
T Consensus 15 ~~-ILivdd~~~~-~~~l~~~L~~~g~---~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~-~~~g~~~~~~l~~~~~~~~ 88 (153)
T 3hv2_A 15 PE-ILLVDSQEVI-LQRLQQLLSPLPY---TLHFARDATQALQLLASREVDLVISAAHLP-QMDGPTLLARIHQQYPSTT 88 (153)
T ss_dssp CE-EEEECSCHHH-HHHHHHHHTTSSC---EEEEESSHHHHHHHHHHSCCSEEEEESCCS-SSCHHHHHHHHHHHCTTSE
T ss_pred ce-EEEECCCHHH-HHHHHHHhcccCc---EEEEECCHHHHHHHHHcCCCCEEEEeCCCC-cCcHHHHHHHHHhHCCCCe
Confidence 35 5666666542 4666777766554 46666666666665554 58888765443 345777777665 3678
Q ss_pred EEec-CCCC---chhhhccC-CeEEEEcCCCHHHHHHHHHHHHhCcc
Q 001292 529 VITP-DFPI---IKEYVAEG-AQVIFFQKDNPEGLSRAFSLFISNGK 570 (1106)
Q Consensus 529 VIAS-D~gG---I~EiV~Dg-~nG~LV~~~D~eeLAeAI~~LLsDpe 570 (1106)
||+- .... ..+.+..| ..+++..|-+.++|..+|..++....
T Consensus 89 ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~ 135 (153)
T 3hv2_A 89 RILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQH 135 (153)
T ss_dssp EEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHhH
Confidence 8764 3222 33556667 68999999999999999999887433
No 124
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=62.57 E-value=50 Score=33.71 Aligned_cols=106 Identities=14% Similarity=0.111 Sum_probs=71.0
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHh--CCCEEec
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF--GIPVITP 532 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~--G~PVIAS 532 (1106)
++|+.+.+.. ...++.+.+..|+. |.......+....+.. .|++++--... +.-|..+++.+.. .+|||+-
T Consensus 8 ILivdd~~~~-~~~l~~~L~~~g~~---v~~~~~~~~al~~l~~~~~dlvilD~~l~-~~~g~~~~~~lr~~~~~~ii~l 82 (238)
T 2gwr_A 8 ILVVDDDASL-AEMLTIVLRGEGFD---TAVIGDGTQALTAVRELRPDLVLLDLMLP-GMNGIDVCRVLRADSGVPIVML 82 (238)
T ss_dssp EEEECSCHHH-HHHHHHHHHHTTCE---EEEECCGGGHHHHHHHHCCSEEEEESSCS-SSCHHHHHHHHHTTCCCCEEEE
T ss_pred EEEEeCCHHH-HHHHHHHHHHCCCE---EEEECCHHHHHHHHHhCCCCEEEEeCCCC-CCCHHHHHHHHHhCCCCcEEEE
Confidence 5667776643 56677777766653 5555555565555543 68888754442 2346777777653 6888863
Q ss_pred ----CCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 533 ----DFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 533 ----D~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
+.....+.+..|..|++..|.++++|..+|..++.
T Consensus 83 t~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 121 (238)
T 2gwr_A 83 TAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLR 121 (238)
T ss_dssp EETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCC
T ss_pred eCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 22334566777889999999999999999988765
No 125
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=62.32 E-value=40 Score=29.90 Aligned_cols=106 Identities=11% Similarity=0.079 Sum_probs=65.7
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHH---hCCCEEe
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMT---FGIPVIT 531 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA---~G~PVIA 531 (1106)
++++.+.+.. ...++...+..|+. .|.......+...++.. .|++++--... +.-|..+++.+. ..+|||.
T Consensus 5 ilivdd~~~~-~~~l~~~l~~~g~~--vv~~~~~~~~a~~~~~~~~~dlil~D~~l~-~~~g~~~~~~l~~~~~~~~ii~ 80 (120)
T 1tmy_A 5 VLIVDDAAFM-RMMLKDIITKAGYE--VAGEATNGREAVEKYKELKPDIVTMDITMP-EMNGIDAIKEIMKIDPNAKIIV 80 (120)
T ss_dssp EEEECSCHHH-HHHHHHHHHHTTCE--EEEEESSHHHHHHHHHHHCCSEEEEECSCG-GGCHHHHHHHHHHHCTTCCEEE
T ss_pred EEEEcCcHHH-HHHHHHHHhhcCcE--EEEEECCHHHHHHHHHhcCCCEEEEeCCCC-CCcHHHHHHHHHhhCCCCeEEE
Confidence 4566665542 46667777766653 24344444454444443 68888654332 134667777664 3678776
Q ss_pred c-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHH
Q 001292 532 P-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFI 566 (1106)
Q Consensus 532 S-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LL 566 (1106)
- .... ..+.+..|..+++..|-++++|.++|..++
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 81 CSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp EECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred EeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 3 3332 235566788899999999999999988764
No 126
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=61.58 E-value=45 Score=29.66 Aligned_cols=106 Identities=12% Similarity=0.095 Sum_probs=67.3
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHH--hCCCEEec
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMT--FGIPVITP 532 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA--~G~PVIAS 532 (1106)
++++.+.+.. ...++...+..|+ .|.......+...++.. .|++++--... +.-|..+++.+. ..+|||.-
T Consensus 6 ilivdd~~~~-~~~l~~~l~~~~~---~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~-~~~g~~~~~~l~~~~~~~ii~~ 80 (123)
T 1xhf_A 6 ILIVEDELVT-RNTLKSIFEAEGY---DVFEATDGAEMHQILSEYDINLVIMDINLP-GKNGLLLARELREQANVALMFL 80 (123)
T ss_dssp EEEECSCHHH-HHHHHHHHHTTTC---EEEEESSHHHHHHHHHHSCCSEEEECSSCS-SSCHHHHHHHHHHHCCCEEEEE
T ss_pred EEEEeCCHHH-HHHHHHHHhhCCc---EEEEeCCHHHHHHHHhcCCCCEEEEcCCCC-CCCHHHHHHHHHhCCCCcEEEE
Confidence 4567666542 4566666665554 35555555555555543 68888754442 234666676654 46787753
Q ss_pred -CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 533 -DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 533 -D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
.... ..+.+..|..+++..|-++++|..+|..++.
T Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 119 (123)
T 1xhf_A 81 TGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 (123)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHH
Confidence 3332 2345566888999999999999999988764
No 127
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=61.49 E-value=33 Score=30.99 Aligned_cols=109 Identities=14% Similarity=0.066 Sum_probs=70.9
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHHh-----CCCE
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMTF-----GIPV 529 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA~-----G~PV 529 (1106)
++|+.+.+.. ...++.+.++.|. .|.......+....+. ..|++++-.... +.-|..+++.+.. ..||
T Consensus 9 ilivdd~~~~-~~~l~~~L~~~g~---~v~~~~~~~~a~~~l~~~~~dlii~d~~l~-~~~g~~~~~~l~~~~~~~~~~i 83 (132)
T 3lte_A 9 ILVVDDDQAM-AAAIERVLKRDHW---QVEIAHNGFDAGIKLSTFEPAIMTLDLSMP-KLDGLDVIRSLRQNKVANQPKI 83 (132)
T ss_dssp EEEECSCHHH-HHHHHHHHHHTTC---EEEEESSHHHHHHHHHHTCCSEEEEESCBT-TBCHHHHHHHHHTTTCSSCCEE
T ss_pred EEEEECCHHH-HHHHHHHHHHCCc---EEEEeCCHHHHHHHHHhcCCCEEEEecCCC-CCCHHHHHHHHHhcCccCCCeE
Confidence 5667766543 5677777777665 3656665556555554 368888765543 3457888887763 3455
Q ss_pred EecCCC---CchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcc
Q 001292 530 ITPDFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGK 570 (1106)
Q Consensus 530 IASD~g---GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpe 570 (1106)
|..... ...+.+..|..+++..|-++++|.++|........
T Consensus 84 i~~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 127 (132)
T 3lte_A 84 LVVSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEGH 127 (132)
T ss_dssp EEECCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC---
T ss_pred EEEeCCChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCCC
Confidence 554322 23455667889999999999999999999876543
No 128
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=61.36 E-value=22 Score=32.75 Aligned_cols=109 Identities=16% Similarity=0.046 Sum_probs=69.9
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHH---hCCCEEe
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMT---FGIPVIT 531 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA---~G~PVIA 531 (1106)
++|+.+.+.. ...++...+..|+ .|.......+....+.. .|++|+-. .. +.-|..+++.+. ..+|||+
T Consensus 7 iLivdd~~~~-~~~l~~~L~~~g~---~v~~~~~~~~a~~~l~~~~~dlvi~d~-~~-~~~g~~~~~~l~~~~~~~pii~ 80 (142)
T 2qxy_A 7 VMVVDESRIT-FLAVKNALEKDGF---NVIWAKNEQEAFTFLRREKIDLVFVDV-FE-GEESLNLIRRIREEFPDTKVAV 80 (142)
T ss_dssp EEEECSCHHH-HHHHHHHHGGGTC---EEEEESSHHHHHHHHTTSCCSEEEEEC-TT-THHHHHHHHHHHHHCTTCEEEE
T ss_pred EEEEeCCHHH-HHHHHHHHHhCCC---EEEEECCHHHHHHHHhccCCCEEEEeC-CC-CCcHHHHHHHHHHHCCCCCEEE
Confidence 4566666542 5667777776665 35555555666666554 68888765 42 223555666554 2578876
Q ss_pred c-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHhCccc
Q 001292 532 P-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKL 571 (1106)
Q Consensus 532 S-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpel 571 (1106)
- .... ..+.+..|..+++..+-+.++|..+|..++.....
T Consensus 81 ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 124 (142)
T 2qxy_A 81 LSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTPR 124 (142)
T ss_dssp EESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC---
T ss_pred EECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhccc
Confidence 4 3332 34455668889999999999999999999876553
No 129
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=60.98 E-value=54 Score=30.12 Aligned_cols=108 Identities=9% Similarity=-0.049 Sum_probs=65.7
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHH--------hC
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMT--------FG 526 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA--------~G 526 (1106)
++|+.+.+.. ...++.+.+..|. .|.......+....+.. .|++++--... +.-|..+++.+. ..
T Consensus 13 iLivdd~~~~-~~~l~~~L~~~~~---~v~~~~~~~~al~~l~~~~~dlvllD~~lp-~~~g~~~~~~l~~~~~~~~~~~ 87 (140)
T 3c97_A 13 VLIAEDNDIC-RLVAAKALEKCTN---DITVVTNGLQALQAYQNRQFDVIIMDIQMP-VMDGLEAVSEIRNYERTHNTKR 87 (140)
T ss_dssp EEEECCCHHH-HHHHHHHHTTTCS---EEEEESSHHHHHHHHHHSCCSEEEECTTCC-SSCHHHHHHHHHHHHHHHTCCC
T ss_pred EEEEcCCHHH-HHHHHHHHHHcCC---ceEEECCHHHHHHHHhcCCCCEEEEeCCCC-CCcHHHHHHHHHhhhhhcCCCc
Confidence 5667666542 4555565554443 46666655565555544 68888754442 234677777765 24
Q ss_pred CCEEec-CCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCc
Q 001292 527 IPVITP-DFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNG 569 (1106)
Q Consensus 527 ~PVIAS-D~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDp 569 (1106)
+|||+. ...........+..+++..|-++++|..+|..++...
T Consensus 88 ~~ii~~s~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 131 (140)
T 3c97_A 88 ASIIAITADTIDDDRPGAELDEYVSKPLNPNQLRDVVLTCHSEG 131 (140)
T ss_dssp CCCEEEESSCCSCCCCCSSCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred eEEEEEeCccchhHHHhCChhheEeCCCCHHHHHHHHHHHhCCC
Confidence 666653 3322223234456789999999999999999987643
No 130
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=60.93 E-value=29 Score=32.55 Aligned_cols=112 Identities=13% Similarity=0.124 Sum_probs=70.4
Q ss_pred eEEEEEEcCCCCccHHHHHHHHHH-cCCCCCcEE-EcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHh---C
Q 001292 454 FKFVFLCGNSTDGYNDALQEVASR-LGLLEHSVR-HYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF---G 526 (1106)
Q Consensus 454 ikfLIIVG~GperY~eeLkeLaek-lGL~d~rV~-flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~---G 526 (1106)
.+ ++|+.+.+.. ...++.+.+. .|+ .|. ......+...++.. .|++|+--... +.-|..+++.+.. .
T Consensus 6 ~~-ILivdd~~~~-~~~l~~~L~~~~~~---~v~~~~~~~~~a~~~l~~~~~dlii~D~~l~-~~~g~~~~~~l~~~~~~ 79 (153)
T 3cz5_A 6 AR-IMLVDDHPIV-REGYRRLIERRPGY---AVVAEAADAGEAYRLYRETTPDIVVMDLTLP-GPGGIEATRHIRQWDGA 79 (153)
T ss_dssp EE-EEEECSCHHH-HHHHHHHHTTSTTE---EEEEEESSHHHHHHHHHTTCCSEEEECSCCS-SSCHHHHHHHHHHHCTT
T ss_pred cE-EEEECCcHHH-HHHHHHHHhhCCCc---EEEEEeCCHHHHHHHHhcCCCCEEEEecCCC-CCCHHHHHHHHHHhCCC
Confidence 45 4666665542 4555555553 232 233 34455565555554 58888765443 2456777776653 6
Q ss_pred CCEEec-CCC---CchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCccc
Q 001292 527 IPVITP-DFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKL 571 (1106)
Q Consensus 527 ~PVIAS-D~g---GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpel 571 (1106)
+|||+- ... ...+.+..|..+++..+-+.++|..+|..++.....
T Consensus 80 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~~ 128 (153)
T 3cz5_A 80 ARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGRRA 128 (153)
T ss_dssp CCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTCCE
T ss_pred CeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCCcc
Confidence 788764 332 234556678899999999999999999999876553
No 131
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=60.57 E-value=51 Score=34.03 Aligned_cols=109 Identities=9% Similarity=-0.019 Sum_probs=72.9
Q ss_pred CeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHh---CC
Q 001292 453 SFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF---GI 527 (1106)
Q Consensus 453 dikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~---G~ 527 (1106)
..+ ++|+-+.+.. ...++.+.+..|+ .|.......+....+.. .|++|+--... +.-|..+++.+.. .+
T Consensus 23 ~~~-ILivdd~~~~-~~~l~~~L~~~g~---~v~~~~~~~~al~~~~~~~~dlvllD~~lp-~~~g~~~~~~lr~~~~~~ 96 (250)
T 3r0j_A 23 EAR-VLVVDDEANI-VELLSVSLKFQGF---EVYTATNGAQALDRARETRPDAVILDVXMP-GMDGFGVLRRLRADGIDA 96 (250)
T ss_dssp SCE-EEEECSCHHH-HHHHHHHHHHTTC---EEEEESSHHHHHHHHHHHCCSEEEEESCCS-SSCHHHHHHHHHHTTCCC
T ss_pred Cce-EEEEECCHHH-HHHHHHHHHHCCC---EEEEECCHHHHHHHHHhCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCCC
Confidence 456 5677776643 5677777777665 35555555555555543 68888754442 2457778877653 57
Q ss_pred CEEec-CCC---CchhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 528 PVITP-DFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 528 PVIAS-D~g---GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
|||+- ... ...+.+..|..+++..|-++++|..+|..++.
T Consensus 97 ~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~ 140 (250)
T 3r0j_A 97 PALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILR 140 (250)
T ss_dssp CEEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 88764 332 23455677889999999999999999988865
No 132
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=59.78 E-value=45 Score=30.42 Aligned_cols=110 Identities=11% Similarity=0.088 Sum_probs=67.6
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHHh---CCCEEe
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMTF---GIPVIT 531 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA~---G~PVIA 531 (1106)
++|+.+.+.. ...++.+.+..+--. .|.......+...++. ..|++++--... ..-|..+++.+.- .+|||.
T Consensus 6 Ilivdd~~~~-~~~l~~~l~~~~~~~-~v~~~~~~~~al~~~~~~~~dlvilD~~lp-~~~g~~~~~~l~~~~~~~~ii~ 82 (133)
T 3b2n_A 6 LIIAEDQNML-RQAMVQLIKLHGDFE-ILADTDNGLDAMKLIEEYNPNVVILDIEMP-GMTGLEVLAEIRKKHLNIKVII 82 (133)
T ss_dssp EEEECSCHHH-HHHHHHHHHHHSSEE-EEEEESCHHHHHHHHHHHCCSEEEECSSCS-SSCHHHHHHHHHHTTCSCEEEE
T ss_pred EEEECCCHHH-HHHHHHHHhhCCCcE-EEEEcCCHHHHHHHHhhcCCCEEEEecCCC-CCCHHHHHHHHHHHCCCCcEEE
Confidence 4566665542 456666666554111 2333444445544444 368888755442 2346777777753 577775
Q ss_pred c-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHhCc
Q 001292 532 P-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNG 569 (1106)
Q Consensus 532 S-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDp 569 (1106)
- .... ..+.+..|..+++..|.++++|..+|..++...
T Consensus 83 ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 124 (133)
T 3b2n_A 83 VTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGE 124 (133)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC--
T ss_pred EecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCC
Confidence 3 3332 345566788999999999999999999987643
No 133
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=57.13 E-value=42 Score=30.00 Aligned_cols=106 Identities=17% Similarity=0.136 Sum_probs=67.3
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHH---hCCCEEe
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMT---FGIPVIT 531 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA---~G~PVIA 531 (1106)
++++.+.+.. ...++...+..|+ .|.......+...++. ..|++++--... ..-|..+++.+. ..+|||.
T Consensus 6 ilivdd~~~~-~~~l~~~l~~~~~---~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~-~~~g~~~~~~l~~~~~~~~ii~ 80 (124)
T 1srr_A 6 ILIVDDQSGI-RILLNEVFNKEGY---QTFQAANGLQALDIVTKERPDLVLLDMKIP-GMDGIEILKRMKVIDENIRVII 80 (124)
T ss_dssp EEEECSCHHH-HHHHHHHHHTTTC---EEEEESSHHHHHHHHHHHCCSEEEEESCCT-TCCHHHHHHHHHHHCTTCEEEE
T ss_pred EEEEeCCHHH-HHHHHHHHHHCCc---EEEEeCCHHHHHHHHhccCCCEEEEecCCC-CCCHHHHHHHHHHhCCCCCEEE
Confidence 4667766542 4666676665554 3554444455544443 368888754432 234666777664 3678775
Q ss_pred c-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 532 P-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 532 S-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
- .... ..+.+..|..+++..|-+.++|..+|..++.
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 81 MTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp EESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred EEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhc
Confidence 3 3332 3345566788999999999999999988764
No 134
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=56.01 E-value=53 Score=32.52 Aligned_cols=107 Identities=13% Similarity=0.135 Sum_probs=69.7
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHh---CCCEEe
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF---GIPVIT 531 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~---G~PVIA 531 (1106)
++|+.+.+.. ...++.+.+..|+ .|.......+....+.. .|++++--... +.-|..+++.+.. ++|||.
T Consensus 7 ilivdd~~~~-~~~l~~~L~~~g~---~v~~~~~~~~al~~~~~~~~dlvl~D~~lp-~~~g~~~~~~l~~~~~~~~ii~ 81 (208)
T 1yio_A 7 VFVVDDDMSV-REGLRNLLRSAGF---EVETFDCASTFLEHRRPEQHGCLVLDMRMP-GMSGIELQEQLTAISDGIPIVF 81 (208)
T ss_dssp EEEECSCHHH-HHHHHHHHHTTTC---EEEEESSHHHHHHHCCTTSCEEEEEESCCS-SSCHHHHHHHHHHTTCCCCEEE
T ss_pred EEEEcCCHHH-HHHHHHHHHhCCc---eEEEcCCHHHHHHhhhccCCCEEEEeCCCC-CCCHHHHHHHHHhcCCCCCEEE
Confidence 4667766643 5666777765554 35544444455444433 57877654332 2457777777653 688876
Q ss_pred c-C---CCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhC
Q 001292 532 P-D---FPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISN 568 (1106)
Q Consensus 532 S-D---~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsD 568 (1106)
- . .....+.+..|..+++..|.++++|..+|..++..
T Consensus 82 ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (208)
T 1yio_A 82 ITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQL 122 (208)
T ss_dssp EESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhh
Confidence 3 2 23455667778899999999999999999988764
No 135
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=54.46 E-value=73 Score=32.00 Aligned_cols=111 Identities=12% Similarity=0.120 Sum_probs=72.6
Q ss_pred eEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH---------------HcCeEEEccCCCCCCCcHH
Q 001292 454 FKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL---------------MADIVLYGSSQVEQGFPSL 518 (1106)
Q Consensus 454 ikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya---------------aADVfV~PS~~EeEGFGlv 518 (1106)
.+ ++|+-+.+.. ...++.+.+..|+. .|.......+...++. ..|++|+--... ..-|..
T Consensus 62 ~~-ILiVdDd~~~-~~~l~~~L~~~g~~--~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp-~~~G~e 136 (206)
T 3mm4_A 62 KR-VLVVDDNFIS-RKVATGKLKKMGVS--EVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMP-EMDGYE 136 (206)
T ss_dssp CE-EEEECSCHHH-HHHHHHHHHHTTCS--EEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCS-SSCHHH
T ss_pred CE-EEEEeCCHHH-HHHHHHHHHHcCCC--eeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCC-CCCHHH
Confidence 45 5667776653 57778888888875 4777776666666665 368988754442 245777
Q ss_pred HHHHHH-------hCCCEEec-CCC----CchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCccc
Q 001292 519 IVRAMT-------FGIPVITP-DFP----IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKL 571 (1106)
Q Consensus 519 LLEAMA-------~G~PVIAS-D~g----GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpel 571 (1106)
+++.+. ..+|||+- ... ...+.+..|..+++..|-+ +|.++|..++....+
T Consensus 137 l~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~~~ 199 (206)
T 3mm4_A 137 ATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESKRHL 199 (206)
T ss_dssp HHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC-----
T ss_pred HHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhhhHH
Confidence 777765 45888864 322 2334566688899998777 899999999876554
No 136
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=54.32 E-value=87 Score=27.40 Aligned_cols=105 Identities=9% Similarity=0.058 Sum_probs=66.1
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHH---hCCCEEe
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMT---FGIPVIT 531 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA---~G~PVIA 531 (1106)
++++.+.+.. ...++...+..|+ .|.......+....+.. .|++++--... ..-|..+++.+. ..+|||.
T Consensus 4 ilivdd~~~~-~~~l~~~l~~~~~---~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~-~~~g~~~~~~l~~~~~~~~ii~ 78 (116)
T 3a10_A 4 ILVVDDEPNI-RELLKEELQEEGY---EIDTAENGEEALKKFFSGNYDLVILDIEMP-GISGLEVAGEIRKKKKDAKIIL 78 (116)
T ss_dssp EEEECSCHHH-HHHHHHHHHHTTC---EEEEESSHHHHHHHHHHSCCSEEEECSCCS-SSCHHHHHHHHHHHCTTCCEEE
T ss_pred EEEEeCCHHH-HHHHHHHHHHCCC---EEEEeCCHHHHHHHHhcCCCCEEEEECCCC-CCCHHHHHHHHHccCCCCeEEE
Confidence 4567766543 5667777776665 35555555555555544 58888754442 234677777664 3577775
Q ss_pred c-CCCC-chhhhccCCeEEEEcCCCHHHHHHHHHHHH
Q 001292 532 P-DFPI-IKEYVAEGAQVIFFQKDNPEGLSRAFSLFI 566 (1106)
Q Consensus 532 S-D~gG-I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LL 566 (1106)
- .... ..+....|..+++..|-+.++|..+|..++
T Consensus 79 ~s~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 79 LTAYSHYRSDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp EESCGGGGGCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred EECCcchHHHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 3 3222 134455577899999999999999988764
No 137
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=53.39 E-value=68 Score=29.27 Aligned_cols=109 Identities=11% Similarity=-0.016 Sum_probs=70.0
Q ss_pred CCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH---cCeEEEccCCCCCCCcHHHHHHHHh---
Q 001292 452 GSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM---ADIVLYGSSQVEQGFPSLIVRAMTF--- 525 (1106)
Q Consensus 452 PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa---ADVfV~PS~~EeEGFGlvLLEAMA~--- 525 (1106)
+..+ ++|+.+.+.. ...++...+..|+ .|.......+....+.. .|++++-.... +.-|..+++.+..
T Consensus 14 ~~~~-ilivdd~~~~-~~~l~~~L~~~g~---~v~~~~~~~~al~~l~~~~~~dlvilD~~l~-~~~g~~~~~~l~~~~~ 87 (138)
T 2b4a_A 14 QPFR-VTLVEDEPSH-ATLIQYHLNQLGA---EVTVHPSGSAFFQHRSQLSTCDLLIVSDQLV-DLSIFSLLDIVKEQTK 87 (138)
T ss_dssp CCCE-EEEECSCHHH-HHHHHHHHHHTTC---EEEEESSHHHHHHTGGGGGSCSEEEEETTCT-TSCHHHHHHHHTTSSS
T ss_pred CCCe-EEEECCCHHH-HHHHHHHHHHcCC---EEEEeCCHHHHHHHHHhCCCCCEEEEeCCCC-CCCHHHHHHHHHhhCC
Confidence 4455 5677776643 5677777777665 46666655566555544 78888765443 2457778887754
Q ss_pred CCCEEec--CCCCc--hhhhccCCeEEEEcCCCHHHHHHHHHHHHhCc
Q 001292 526 GIPVITP--DFPII--KEYVAEGAQVIFFQKDNPEGLSRAFSLFISNG 569 (1106)
Q Consensus 526 G~PVIAS--D~gGI--~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDp 569 (1106)
.+|||.- ..... .+.+ ..+++..+-+.++|..+|..++...
T Consensus 88 ~~~ii~ls~~~~~~~~~~~~---~~~~l~KP~~~~~L~~~i~~~~~~~ 132 (138)
T 2b4a_A 88 QPSVLILTTGRHELIESSEH---NLSYLQKPFAISELRAAIDYHKPSM 132 (138)
T ss_dssp CCEEEEEESCC--CCCCSSS---CEEEEESSCCHHHHHHHHHHTCCC-
T ss_pred CCCEEEEECCCCCHHHHHHH---HHheeeCCCCHHHHHHHHHHHHHhc
Confidence 5777653 32221 2222 5789999999999999999887644
No 138
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=52.70 E-value=94 Score=28.41 Aligned_cols=109 Identities=14% Similarity=0.051 Sum_probs=68.3
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHh-----CCCE
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF-----GIPV 529 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~-----G~PV 529 (1106)
++|+.+.+.. ...++.+.+..|+. |.......+...++.. .|++++--... +.-|..+++.+.. .+||
T Consensus 6 ILivdd~~~~-~~~l~~~L~~~g~~---v~~~~~~~~al~~l~~~~~dlvi~D~~l~-~~~g~~~~~~l~~~~~~~~~~i 80 (138)
T 3c3m_A 6 ILVVDDSPMI-VDVFVTMLERGGYR---PITAFSGEECLEALNATPPDLVLLDIMME-PMDGWETLERIKTDPATRDIPV 80 (138)
T ss_dssp EEEECSCHHH-HHHHHHHHHHTTCE---EEEESSHHHHHHHHHHSCCSEEEEESCCS-SSCHHHHHHHHHHSTTTTTSCE
T ss_pred EEEEeCCHHH-HHHHHHHHHHcCce---EEEeCCHHHHHHHHhccCCCEEEEeCCCC-CCCHHHHHHHHHcCcccCCCCE
Confidence 5667766643 56677777766653 5555555555555554 58888754442 2447788888753 5788
Q ss_pred Eec-CCCCch-hhh--ccCCeEEEEcCCCHHHHHHHHHHHHhCcc
Q 001292 530 ITP-DFPIIK-EYV--AEGAQVIFFQKDNPEGLSRAFSLFISNGK 570 (1106)
Q Consensus 530 IAS-D~gGI~-EiV--~Dg~nG~LV~~~D~eeLAeAI~~LLsDpe 570 (1106)
|.- ...... ... ..+..+++..|.+.++|..+|..++....
T Consensus 81 i~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~~ 125 (138)
T 3c3m_A 81 LMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARRH 125 (138)
T ss_dssp EEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC-
T ss_pred EEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHHhh
Confidence 753 333222 222 22346899999999999999999887544
No 139
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=52.27 E-value=56 Score=29.77 Aligned_cols=112 Identities=13% Similarity=0.119 Sum_probs=69.2
Q ss_pred eEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH-cCeEEEccCCCCCCCcHHHHHHHH--h-----
Q 001292 454 FKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM-ADIVLYGSSQVEQGFPSLIVRAMT--F----- 525 (1106)
Q Consensus 454 ikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa-ADVfV~PS~~EeEGFGlvLLEAMA--~----- 525 (1106)
.+ ++|+.+.+.. ...++.+.+..|+ .|.......+...++.. .|++++--... ..-|..+++.+. .
T Consensus 8 ~~-ILivdd~~~~-~~~l~~~L~~~g~---~v~~~~~~~~a~~~~~~~~dlvllD~~lp-~~~g~~~~~~l~~~~~~~~~ 81 (136)
T 1dcf_A 8 LK-VLVMDENGVS-RMVTKGLLVHLGC---EVTTVSSNEECLRVVSHEHKVVFMDVCMP-GVENYQIALRIHEKFTKQRH 81 (136)
T ss_dssp CE-EEEECSCHHH-HHHHHHHHHHTTC---EEEEESSHHHHHHHCCTTCSEEEEECCSS-TTTTTHHHHHHHHHHC-CCS
T ss_pred Ce-EEEEeCCHHH-HHHHHHHHHHcCC---eEEEeCCHHHHHHHHhccCCEEEEeCCCC-CCcHHHHHHHHHHhhhhccC
Confidence 35 5667766543 4667777776665 35544444454444432 38888754332 234666777664 1
Q ss_pred CCC-EE-ecCCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHhCccc
Q 001292 526 GIP-VI-TPDFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKL 571 (1106)
Q Consensus 526 G~P-VI-ASD~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpel 571 (1106)
..| || .+.... ..+.+..|..+++..|-+.++|.++|..++.....
T Consensus 82 ~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~~ 132 (136)
T 1dcf_A 82 QRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEPRVL 132 (136)
T ss_dssp CCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSCCCC
T ss_pred CCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhchhhh
Confidence 244 54 444443 23455668899999999999999999998875543
No 140
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=52.13 E-value=28 Score=34.26 Aligned_cols=106 Identities=11% Similarity=0.062 Sum_probs=71.5
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHh---CCCEEe
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF---GIPVIT 531 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~---G~PVIA 531 (1106)
++|+.+.+.. ...++.+.+..|+ .|.......+....+.. .|++++--... +.-|..+++.+.- .+|||+
T Consensus 10 iLivdd~~~~-~~~l~~~L~~~g~---~v~~~~~~~~al~~~~~~~~dlvl~D~~lp-~~~g~~~~~~l~~~~~~~~ii~ 84 (184)
T 3rqi_A 10 FLVIDDNEVF-AGTLARGLERRGY---AVRQAHNKDEALKLAGAEKFEFITVXLHLG-NDSGLSLIAPLCDLQPDARILV 84 (184)
T ss_dssp EEEECSCHHH-HHHHHHHHHHTTC---EEEEECSHHHHHHHHTTSCCSEEEECSEET-TEESHHHHHHHHHHCTTCEEEE
T ss_pred EEEEcCCHHH-HHHHHHHHHHCCC---EEEEeCCHHHHHHHHhhCCCCEEEEeccCC-CccHHHHHHHHHhcCCCCCEEE
Confidence 5677776653 5677777777665 36555555566666554 58888644332 2447778777653 678876
Q ss_pred c-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 532 P-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 532 S-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
- .... ..+.+..|..+++..|-++++|..+|..++.
T Consensus 85 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~ 124 (184)
T 3rqi_A 85 LTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNAS 124 (184)
T ss_dssp EESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHH
T ss_pred EeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 3 3332 3456677889999999999999999988765
No 141
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=51.74 E-value=38 Score=34.06 Aligned_cols=102 Identities=14% Similarity=0.089 Sum_probs=66.5
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHh---CCCEEe
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF---GIPVIT 531 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~---G~PVIA 531 (1106)
++|+.+.+.. ...++.+.+..|+. |.......+....+.. .|++++|. .-|..+++.+.. .+|||+
T Consensus 3 ilivdd~~~~-~~~l~~~L~~~g~~---v~~~~~~~~al~~l~~~~~dlvilp~-----~~g~~~~~~lr~~~~~~~ii~ 73 (223)
T 2hqr_A 3 VLLIEKNSVL-GGEIEKGLNVKGFM---ADVTESLEDGEYLMDIRNYDLVMVSD-----KNALSFVSRIKEKHSSIVVLV 73 (223)
T ss_dssp EEEECSCHHH-HHHHHHHHGGGTCC---EEEESSHHHHHHHHTTSCCSEEEECC-----TTHHHHHHHHHHHCTTSEEEE
T ss_pred EEEEcCCHHH-HHHHHHHHHHCCcE---EEEECCHHHHHHHHhcCCCCEEEeCC-----CCHHHHHHHHHhCCCCCcEEE
Confidence 3556665542 46666666665653 5555555565555553 58888553 336677776643 688876
Q ss_pred c-CCCC---chhhhccCCeEEEEcCC-CHHHHHHHHHHHHh
Q 001292 532 P-DFPI---IKEYVAEGAQVIFFQKD-NPEGLSRAFSLFIS 567 (1106)
Q Consensus 532 S-D~gG---I~EiV~Dg~nG~LV~~~-D~eeLAeAI~~LLs 567 (1106)
- .... ..+.+..|..|++..+. ++++|..+|..++.
T Consensus 74 lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~ 114 (223)
T 2hqr_A 74 SSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLR 114 (223)
T ss_dssp EESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTS
T ss_pred EECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhc
Confidence 4 3322 34556668899999998 99999999988875
No 142
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=51.19 E-value=71 Score=29.53 Aligned_cols=108 Identities=12% Similarity=0.018 Sum_probs=58.9
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEE-EcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHH---hCCCEE
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVR-HYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMT---FGIPVI 530 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~-flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA---~G~PVI 530 (1106)
++|+.+.+.. ...+.......+..- .+. ......+....+.. .|++++--... +.-|..+++.+. ..+|||
T Consensus 5 ILivdd~~~~-~~~l~~~L~~~~~~~-~~~~~~~~~~~al~~~~~~~~dlvllD~~lp-~~~g~~l~~~l~~~~~~~~ii 81 (141)
T 3cu5_A 5 ILIVDDEKLT-RDGLIANINWKALSF-DQIDQADDGINAIQIALKHPPNVLLTDVRMP-RMDGIELVDNILKLYPDCSVI 81 (141)
T ss_dssp EEEECSCHHH-HHHHHHHCCGGGSCC-SEEEEESSHHHHHHHHTTSCCSEEEEESCCS-SSCHHHHHHHHHHHCTTCEEE
T ss_pred EEEEeCCHHH-HHHHHHHHHHccCCc-EEeeecccHHHHHHHHhcCCCCEEEEeCCCC-CCCHHHHHHHHHhhCCCCcEE
Confidence 4566665532 233333332111221 233 33344455555443 68888754432 234677777664 367877
Q ss_pred ec-CC---CCchhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 531 TP-DF---PIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 531 AS-D~---gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
.- .. ....+.+..|..+++..|-++++|.++|..++.
T Consensus 82 ~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 122 (141)
T 3cu5_A 82 FMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQ 122 (141)
T ss_dssp EECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHH
T ss_pred EEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 53 22 234455667888999999999999999988765
No 143
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=51.02 E-value=1.1e+02 Score=31.82 Aligned_cols=109 Identities=14% Similarity=0.152 Sum_probs=72.1
Q ss_pred CeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHH---hCC
Q 001292 453 SFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMT---FGI 527 (1106)
Q Consensus 453 dikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA---~G~ 527 (1106)
..+ ++|+.+.+.. ...+..+.++.|+. |.....-.+...++.. .|++++--... +.-|..+++.+. ..+
T Consensus 129 ~~~-ILivdd~~~~-~~~l~~~L~~~g~~---v~~a~~~~eal~~l~~~~~dlvl~D~~mp-~~~G~~l~~~ir~~~~~~ 202 (254)
T 2ayx_A 129 DMM-ILVVDDHPIN-RRLLADQLGSLGYQ---CKTANDGVDALNVLSKNHIDIVLSDVNMP-NMDGYRLTQRIRQLGLTL 202 (254)
T ss_dssp CCE-EEEEESSHHH-HHHHHHHHHHHTSE---EEEECCSHHHHHHHHHSCCSEEEEEESSC-SSCCHHHHHHHHHHHCCS
T ss_pred CCE-EEEEeCCHHH-HHHHHHHHHHcCCE---EEEECCHHHHHHHHHhCCCCEEEEcCCCC-CCCHHHHHHHHHhcCCCC
Confidence 345 5667776653 56777777777763 6665555565555554 68888643332 134666766653 478
Q ss_pred CEEec-CCC---CchhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 528 PVITP-DFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 528 PVIAS-D~g---GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
|||+- ... ...+.+..|..+++..|-+.++|.++|..++.
T Consensus 203 piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 246 (254)
T 2ayx_A 203 PVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAE 246 (254)
T ss_dssp CEEEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHH
Confidence 98864 222 23455667889999999999999999998875
No 144
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=50.94 E-value=23 Score=31.79 Aligned_cols=107 Identities=12% Similarity=0.065 Sum_probs=66.8
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHH-----hCCCE
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMT-----FGIPV 529 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA-----~G~PV 529 (1106)
++++.+.+.. ...++...+..|+. |.......+...++. ..|++++-.... +.-|..+++.+. ..+||
T Consensus 5 ilivdd~~~~-~~~l~~~l~~~g~~---v~~~~~~~~a~~~~~~~~~dlvi~D~~l~-~~~g~~~~~~l~~~~~~~~~~i 79 (127)
T 2jba_A 5 ILVVEDEAPI-REMVCFVLEQNGFQ---PVEAEDYDSAVNQLNEPWPDLILLAWMLP-GGSGIQFIKHLRRESMTRDIPV 79 (127)
T ss_dssp EEEECSCHHH-HHHHHHHHHHTTCE---EEEECSHHHHHTTCSSSCCSEEEEESEET-TEEHHHHHHHHHTSTTTTTSCE
T ss_pred EEEEcCCHHH-HHHHHHHHHHCCce---EEEeCCHHHHHHHHhccCCCEEEEecCCC-CCCHHHHHHHHHhCcccCCCCE
Confidence 4666766542 46667777666553 444444344443333 258887654332 234677787775 35788
Q ss_pred Eec-CCC---CchhhhccCCeEEEEcCCCHHHHHHHHHHHHhC
Q 001292 530 ITP-DFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISN 568 (1106)
Q Consensus 530 IAS-D~g---GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsD 568 (1106)
|.- ... ...+.+..|..+++..|-++++|..+|..++..
T Consensus 80 i~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 122 (127)
T 2jba_A 80 VMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRR 122 (127)
T ss_dssp EEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHC
T ss_pred EEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhc
Confidence 763 322 234455667789999999999999999888754
No 145
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=50.38 E-value=1.3e+02 Score=31.26 Aligned_cols=90 Identities=14% Similarity=0.056 Sum_probs=52.7
Q ss_pred CCCCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHHHHHhHHHHHhhccCccEEEEccccHHHHHH
Q 001292 220 VRPPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLWEQIAGQISILGQEQYSLIDWSIFDGIIADS 299 (1106)
Q Consensus 220 ~r~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r~lg~lvkiIr~~~pDiIh~~~~~~i~v~~ 299 (1106)
.+..+|+++++++.-.--...+..+.+++.+.||++.++..... ....... +..+...++|-|-+..........
T Consensus 3 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~~~~~----~~~l~~~~vdgiIi~~~~~~~~~~ 77 (291)
T 3l49_A 3 LEGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAGRN-DQTQVSQ----IQTLIAQKPDAIIEQLGNLDVLNP 77 (291)
T ss_dssp CTTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECTTC-HHHHHHH----HHHHHHHCCSEEEEESSCHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCCCC-HHHHHHH----HHHHHHcCCCEEEEeCCChhhhHH
Confidence 45678999999876544455667788888899999999865432 2222222 333344578866554433222222
Q ss_pred HHHHHhhhhcccCCCCCCcEEEE
Q 001292 300 LEAKEAISSLMQEPFHSIPLVWI 322 (1106)
Q Consensus 300 La~k~~idII~te~~~gIPVI~t 322 (1106)
...... ..++|+|..
T Consensus 78 ~~~~~~--------~~~iPvV~~ 92 (291)
T 3l49_A 78 WLQKIN--------DAGIPLFTV 92 (291)
T ss_dssp HHHHHH--------HTTCCEEEE
T ss_pred HHHHHH--------HCCCcEEEe
Confidence 222211 268998876
No 146
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=50.25 E-value=73 Score=31.83 Aligned_cols=106 Identities=15% Similarity=0.062 Sum_probs=67.8
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHH---hCCCEEe
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMT---FGIPVIT 531 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA---~G~PVIA 531 (1106)
++|+.+.+.. ...++.+.+..|+ .|.......+....+.. .|++++--... +.-|..+++.+. ..+|||+
T Consensus 5 ilivdd~~~~-~~~l~~~L~~~g~---~v~~~~~~~~a~~~~~~~~~dlvllD~~l~-~~~g~~~~~~lr~~~~~~~ii~ 79 (225)
T 1kgs_A 5 VLVVEDERDL-ADLITEALKKEMF---TVDVCYDGEEGMYMALNEPFDVVILDIMLP-VHDGWEILKSMRESGVNTPVLM 79 (225)
T ss_dssp EEEECSSHHH-HHHHHHHHHHTTC---EEEEESSHHHHHHHHHHSCCSEEEEESCCS-SSCHHHHHHHHHHTTCCCCEEE
T ss_pred EEEEeCCHHH-HHHHHHHHHHCCC---EEEEECCHHHHHHHHhcCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCCCCEEE
Confidence 4566666542 5666777776554 35555554555554443 68888754442 234677777765 3688886
Q ss_pred c-CCC---CchhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 532 P-DFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 532 S-D~g---GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
- ... ...+.+..|..|++..|.++++|..+|..++.
T Consensus 80 ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 119 (225)
T 1kgs_A 80 LTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIR 119 (225)
T ss_dssp EESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHh
Confidence 4 332 23455666888999999999999998877654
No 147
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=49.85 E-value=1.3e+02 Score=31.24 Aligned_cols=67 Identities=9% Similarity=0.069 Sum_probs=43.1
Q ss_pred CCCCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHHHHHhHHHHHhhccCccEEEEcc
Q 001292 220 VRPPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLWEQIAGQISILGQEQYSLIDWSI 291 (1106)
Q Consensus 220 ~r~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r~lg~lvkiIr~~~pDiIh~~~ 291 (1106)
.++.+|+++++++.-.--..++..+-+++.+.||++.++..... .....+ .+..+...++|-+-+..
T Consensus 13 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~~~~----~~~~l~~~~vdgiIi~~ 79 (298)
T 3tb6_A 13 HSNKTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTNNN-PDNERR----GLENLLSQHIDGLIVEP 79 (298)
T ss_dssp --CCEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECTTC-HHHHHH----HHHHHHHTCCSEEEECC
T ss_pred ccCceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCC-hHHHHH----HHHHHHHCCCCEEEEec
Confidence 33478999999977655566677788889999999999866532 222222 23334456788665543
No 148
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=49.04 E-value=1.1e+02 Score=32.17 Aligned_cols=86 Identities=13% Similarity=-0.024 Sum_probs=52.1
Q ss_pred CCCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHHHHHhHHHHHhhccCccEEEEccccH----HH
Q 001292 221 RPPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLWEQIAGQISILGQEQYSLIDWSIFDG----II 296 (1106)
Q Consensus 221 r~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r~lg~lvkiIr~~~pDiIh~~~~~~----i~ 296 (1106)
+..+|++|.++..-.--..++..+.+++++.||++.++...........+. +..+...++|-|-+..... ..
T Consensus 3 ~~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~----i~~l~~~~vdgiIi~~~~~~~~~~~ 78 (305)
T 3g1w_A 3 LNETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITV----LEQAIAKNPAGIAISAIDPVELTDT 78 (305)
T ss_dssp --CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHH----HHHHHHHCCSEEEECCSSTTTTHHH
T ss_pred CCceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHH----HHHHHHhCCCEEEEcCCCHHHHHHH
Confidence 457899999987766566667778888888999999865444333333333 2333345788665543322 22
Q ss_pred HHHHHHHHhhhhcccCCCCCCcEEEE
Q 001292 297 ADSLEAKEAISSLMQEPFHSIPLVWI 322 (1106)
Q Consensus 297 v~~La~k~~idII~te~~~gIPVI~t 322 (1106)
+..+.. .++|+|..
T Consensus 79 ~~~~~~------------~~iPvV~~ 92 (305)
T 3g1w_A 79 INKAVD------------AGIPIVLF 92 (305)
T ss_dssp HHHHHH------------TTCCEEEE
T ss_pred HHHHHH------------CCCcEEEE
Confidence 222222 68898876
No 149
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=47.71 E-value=65 Score=29.06 Aligned_cols=109 Identities=17% Similarity=0.103 Sum_probs=65.2
Q ss_pred EEEEcCCCCccHHHHHHHHHHc-CCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHh----CCCE
Q 001292 457 VFLCGNSTDGYNDALQEVASRL-GLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF----GIPV 529 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaekl-GL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~----G~PV 529 (1106)
++++.+.+.. ...++.+.... |+. .|.......+...++.. .|++++--... ..-|..+++.+.. ..||
T Consensus 5 ilivdd~~~~-~~~l~~~l~~~~~~~--~~~~~~~~~~a~~~~~~~~~dlvllD~~l~-~~~g~~~~~~l~~~~~~~~~i 80 (130)
T 1dz3_A 5 VCIADDNREL-VSLLDEYISSQPDME--VIGTAYNGQDCLQMLEEKRPDILLLDIIMP-HLDGLAVLERIRAGFEHQPNV 80 (130)
T ss_dssp EEEECSCHHH-HHHHHHHHHTSTTEE--EEEEESSHHHHHHHHHHHCCSEEEEESCCS-SSCHHHHHHHHHHHCSSCCEE
T ss_pred EEEEcCCHHH-HHHHHHHHHhCCCce--EEEEeCCHHHHHHHHhcCCCCEEEEecCCC-CCCHHHHHHHHHhcCCCCCcE
Confidence 4566665542 45566655543 221 12233444555555443 68888754432 2346777776642 4566
Q ss_pred Ee-cCCC---CchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCc
Q 001292 530 IT-PDFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNG 569 (1106)
Q Consensus 530 IA-SD~g---GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDp 569 (1106)
|. +... ...+.+..|..+++..|-++++|..+|..++...
T Consensus 81 i~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 124 (130)
T 1dz3_A 81 IMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKT 124 (130)
T ss_dssp EEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC
T ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCC
Confidence 64 3332 2345566788999999999999999999987654
No 150
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=47.51 E-value=13 Score=38.76 Aligned_cols=70 Identities=21% Similarity=0.116 Sum_probs=44.7
Q ss_pred hhHHHHHHHcCeEEE-ccCCCCCCCc--HHHHHHHHhCCCEEecCCCCch-h----------hhccCCeEEEEcCCCHHH
Q 001292 492 GDVNGVLLMADIVLY-GSSQVEQGFP--SLIVRAMTFGIPVITPDFPIIK-E----------YVAEGAQVIFFQKDNPEG 557 (1106)
Q Consensus 492 eDL~~LyaaADVfV~-PS~~EeEGFG--lvLLEAMA~G~PVIASD~gGI~-E----------iV~Dg~nG~LV~~~D~ee 557 (1106)
.--.-+...||.+|. |+ ++| ..+.||+..++||++-|..+.- . ++.......+.-.+|+++
T Consensus 110 ~Rk~~m~~~sda~IvlpG-----G~GTL~E~~eal~~~kPV~lln~~g~w~~~l~~~~~~G~fi~~~~~~~i~~~~~~ee 184 (195)
T 1rcu_A 110 MRSFVLLRNADVVVSIGG-----EIGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGKYLDNRRIVEIHQAWTVEE 184 (195)
T ss_dssp HHHHHHHTTCSEEEEESC-----CHHHHHHHHHHHHTTCCEEEETTSCHHHHHGGGGCBTTTBSSTTCCSCEEEESSHHH
T ss_pred HHHHHHHHhCCEEEEecC-----CCcHHHHHHHHHhcCCCEEEECCCCccHHHHHHHHHcCCcCCHHHcCeEEEeCCHHH
Confidence 445667778998875 43 333 3567889999999999755432 2 222222334455578999
Q ss_pred HHHHHHHHH
Q 001292 558 LSRAFSLFI 566 (1106)
Q Consensus 558 LAeAI~~LL 566 (1106)
+.+.|.+++
T Consensus 185 ~~~~l~~~~ 193 (195)
T 1rcu_A 185 AVQIIEQIL 193 (195)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHHHHh
Confidence 998887643
No 151
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=45.11 E-value=19 Score=33.14 Aligned_cols=109 Identities=12% Similarity=0.089 Sum_probs=68.8
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCC--CCcHHHHHHHHh---CCCE
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQ--GFPSLIVRAMTF---GIPV 529 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeE--GFGlvLLEAMA~---G~PV 529 (1106)
++|+.+.+.. ...++.+.+..|+ .|.......+....+. ..|++|+-.... + .-|..+++.+.. .+||
T Consensus 9 ilivdd~~~~-~~~l~~~L~~~g~---~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~-~~~~~g~~~~~~l~~~~~~~~i 83 (136)
T 3kto_A 9 IYLVDHQKDA-RAALSKLLSPLDV---TIQCFASAESFMRQQISDDAIGMIIEAHLE-DKKDSGIELLETLVKRGFHLPT 83 (136)
T ss_dssp EEEECSCHHH-HHHHHHHHTTSSS---EEEEESSHHHHTTSCCCTTEEEEEEETTGG-GBTTHHHHHHHHHHHTTCCCCE
T ss_pred EEEEcCCHHH-HHHHHHHHHHCCc---EEEEeCCHHHHHHHHhccCCCEEEEeCcCC-CCCccHHHHHHHHHhCCCCCCE
Confidence 5667666542 4666666665554 3554444444433332 367888754442 2 336667766654 6788
Q ss_pred Eec-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcc
Q 001292 530 ITP-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGK 570 (1106)
Q Consensus 530 IAS-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpe 570 (1106)
|.- .... ..+.+..|..+++..|-++++|..+|.+++....
T Consensus 84 i~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~ 128 (136)
T 3kto_A 84 IVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAK 128 (136)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC
T ss_pred EEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccC
Confidence 764 3332 3455677889999999999999999999887544
No 152
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=44.27 E-value=84 Score=27.57 Aligned_cols=106 Identities=12% Similarity=0.035 Sum_probs=63.7
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHH--hCCCEEec
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMT--FGIPVITP 532 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA--~G~PVIAS 532 (1106)
++++.+.+.. ...++...+..|. .|.......+....+. ..|++++--... +.-|..+++.+. ..+|||.-
T Consensus 4 ilivdd~~~~-~~~l~~~l~~~~~---~v~~~~~~~~~~~~~~~~~~dlvi~D~~l~-~~~g~~~~~~l~~~~~~~ii~~ 78 (121)
T 1zh2_A 4 VLIVEDEQAI-RRFLRTALEGDGM---RVFEAETLQRGLLEAATRKPDLIILDLGLP-DGDGIEFIRDLRQWSAVPVIVL 78 (121)
T ss_dssp EEEECSCHHH-HHHHHHHHHTTTC---EEEEESSHHHHHHHHHHHCCSEEEEESEET-TEEHHHHHHHHHTTCCCCEEEE
T ss_pred EEEEeCCHHH-HHHHHHHHhcCCC---EEEEeCCHHHHHHHHhcCCCCEEEEeCCCC-CCcHHHHHHHHHhCCCCcEEEE
Confidence 4566666542 4566666665544 3444443333333332 368888643332 134677777765 34677653
Q ss_pred -CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 533 -DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 533 -D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
.... ..+.+..|..+++..|-+.++|..+|..++.
T Consensus 79 s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (121)
T 1zh2_A 79 SARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 (121)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHH
Confidence 3332 2345566788999999999999999988764
No 153
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=44.08 E-value=47 Score=31.65 Aligned_cols=108 Identities=7% Similarity=-0.009 Sum_probs=67.6
Q ss_pred eEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHH-hCCCEE
Q 001292 454 FKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMT-FGIPVI 530 (1106)
Q Consensus 454 ikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA-~G~PVI 530 (1106)
++ ++||-+.+.- ...++.+.++.|+.- +.....-.+..+++.. -|++++=-..- ..-|.-+++.+. .++|||
T Consensus 9 ~r-ILiVdD~~~~-~~~l~~~L~~~G~~v--~~~a~~g~eAl~~~~~~~~DlvllDi~mP-~~~G~el~~~lr~~~ipvI 83 (123)
T 2lpm_A 9 LR-VLVVEDESMI-AMLIEDTLCELGHEV--AATASRMQEALDIARKGQFDIAIIDVNLD-GEPSYPVADILAERNVPFI 83 (123)
T ss_dssp CC-EEEESSSTTT-SHHHHHHHHHHCCCC--CBCSCCHHHHHHHHHHCCSSEEEECSSSS-SCCSHHHHHHHHHTCCSSC
T ss_pred CE-EEEEeCCHHH-HHHHHHHHHHCCCEE--EEEECCHHHHHHHHHhCCCCEEEEecCCC-CCCHHHHHHHHHcCCCCEE
Confidence 45 5667776653 588888888888762 2223333455555544 58888533321 234677777664 578988
Q ss_pred ec-CCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHH
Q 001292 531 TP-DFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFI 566 (1106)
Q Consensus 531 AS-D~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LL 566 (1106)
.- ..+.......-+..+++..|-++++|..+|.+++
T Consensus 84 ~lTa~~~~~~~~~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 84 FATGYGSKGLDTRYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp CBCTTCTTSCCSSSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred EEecCccHHHHHhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 63 3332222233466788999999999999988765
No 154
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=40.78 E-value=18 Score=33.28 Aligned_cols=106 Identities=14% Similarity=0.044 Sum_probs=65.8
Q ss_pred EEEEcCCCCccHHHHHHHHHHcC-CCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHHh---CCCEE
Q 001292 457 VFLCGNSTDGYNDALQEVASRLG-LLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMTF---GIPVI 530 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklG-L~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA~---G~PVI 530 (1106)
++|+.+.+.. ...++.+.+..| +. |.......+....+. ..|++++-.... +.-|..+++.+.. .+|||
T Consensus 17 ilivdd~~~~-~~~l~~~L~~~g~~~---v~~~~~~~~a~~~l~~~~~dlvi~D~~l~-~~~g~~~~~~l~~~~~~~~ii 91 (135)
T 3snk_A 17 VALFSSDPNF-KRDVATRLDALAIYD---VRVSETDDFLKGPPADTRPGIVILDLGGG-DLLGKPGIVEARALWATVPLI 91 (135)
T ss_dssp EEEECSCHHH-HHHHHHHHHHTSSEE---EEEECGGGGGGCCCTTCCCSEEEEEEETT-GGGGSTTHHHHHGGGTTCCEE
T ss_pred EEEEcCCHHH-HHHHHHHHhhcCCeE---EEEeccHHHHHHHHhccCCCEEEEeCCCC-CchHHHHHHHHHhhCCCCcEE
Confidence 5667766543 577778888776 53 444443334333332 368888654332 1335555555443 68888
Q ss_pred ec-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 531 TP-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 531 AS-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
.- .... ..+.+..|..+++..|-++++|..+|..++.
T Consensus 92 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 132 (135)
T 3snk_A 92 AVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDT 132 (135)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC-
T ss_pred EEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhc
Confidence 64 3222 3455667889999999999999999998875
No 155
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=40.13 E-value=70 Score=35.01 Aligned_cols=68 Identities=15% Similarity=0.145 Sum_probs=45.3
Q ss_pred CCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHhCCCE
Q 001292 452 GSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTFGIPV 529 (1106)
Q Consensus 452 PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~G~PV 529 (1106)
|++++.-|+...+ +..+++++++|++. + ..++.++++. .|++++.+... .-.-.+++|+..|++|
T Consensus 47 ~~~~lvav~d~~~----~~a~~~a~~~g~~~--~-----y~d~~ell~~~~iDaV~I~tP~~--~H~~~~~~al~aGkhV 113 (350)
T 4had_A 47 ENCVVTAIASRDL----TRAREMADRFSVPH--A-----FGSYEEMLASDVIDAVYIPLPTS--QHIEWSIKAADAGKHV 113 (350)
T ss_dssp SSEEEEEEECSSH----HHHHHHHHHHTCSE--E-----ESSHHHHHHCSSCSEEEECSCGG--GHHHHHHHHHHTTCEE
T ss_pred CCeEEEEEECCCH----HHHHHHHHHcCCCe--e-----eCCHHHHhcCCCCCEEEEeCCCc--hhHHHHHHHHhcCCEE
Confidence 6776333443333 66888899988762 2 2467777765 68888765432 2245678999999999
Q ss_pred Eec
Q 001292 530 ITP 532 (1106)
Q Consensus 530 IAS 532 (1106)
++=
T Consensus 114 l~E 116 (350)
T 4had_A 114 VCE 116 (350)
T ss_dssp EEC
T ss_pred EEe
Confidence 873
No 156
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=39.57 E-value=43 Score=33.60 Aligned_cols=105 Identities=16% Similarity=0.058 Sum_probs=65.1
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHH---hCCCEEec-
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMT---FGIPVITP- 532 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA---~G~PVIAS- 532 (1106)
++|+.+.+.. ...+....+..| .|.......+....+...|++++--... +.-|..+++.+. ..+|||.-
T Consensus 5 ilivdd~~~~-~~~l~~~L~~~~----~v~~~~~~~~al~~~~~~dlvllD~~lp-~~~g~~~~~~lr~~~~~~~ii~lt 78 (220)
T 1p2f_A 5 IAVVDDDKNI-LKKVSEKLQQLG----RVKTFLTGEDFLNDEEAFHVVVLDVMLP-DYSGYEICRMIKETRPETWVILLT 78 (220)
T ss_dssp EEEECSCHHH-HHHHHHHHTTTE----EEEEESSHHHHHHCCSCCSEEEEESBCS-SSBHHHHHHHHHHHCTTSEEEEEE
T ss_pred EEEEeCCHHH-HHHHHHHHHhCC----CEEEECCHHHHHHhcCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCCCcEEEEE
Confidence 4566666542 455555555433 3544444444443336679988754442 234677777664 46888764
Q ss_pred CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 533 DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 533 D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
.... ..+.+..|..|++..|.++++|..+|..++.
T Consensus 79 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 116 (220)
T 1p2f_A 79 LLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLE 116 (220)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHc
Confidence 3222 3455666889999999999999999887764
No 157
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=39.29 E-value=1.3e+02 Score=30.95 Aligned_cols=85 Identities=21% Similarity=0.260 Sum_probs=49.7
Q ss_pred CCCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHHHHHhHHHHHhhccCccEEEEccccHHHHH-H
Q 001292 221 RPPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLWEQIAGQISILGQEQYSLIDWSIFDGIIAD-S 299 (1106)
Q Consensus 221 r~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r~lg~lvkiIr~~~pDiIh~~~~~~i~v~-~ 299 (1106)
+..+|+++++++.-.--..++..+.+++.+.||.+.++..... ...... .+..+...++|-|-+.......+. .
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~-~~~~~~----~~~~l~~~~~dgiIi~~~~~~~~~~~ 81 (277)
T 3e61_A 7 KSKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNSDND-IKKAQG----YLATFVSHNCTGMISTAFNENIIENT 81 (277)
T ss_dssp ---CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEECTTC-HHHHHH----HHHHHHHTTCSEEEECGGGHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCC-HHHHHH----HHHHHHhCCCCEEEEecCChHHHHHH
Confidence 3457999998876544455666777888899999998766542 222111 233444557886665544333333 2
Q ss_pred HHHHHhhhhcccCCCCCCcEEEE
Q 001292 300 LEAKEAISSLMQEPFHSIPLVWI 322 (1106)
Q Consensus 300 La~k~~idII~te~~~gIPVI~t 322 (1106)
+.. .++|+|..
T Consensus 82 l~~------------~~iPvV~~ 92 (277)
T 3e61_A 82 LTD------------HHIPFVFI 92 (277)
T ss_dssp HHH------------C-CCEEEG
T ss_pred HHc------------CCCCEEEE
Confidence 322 68899876
No 158
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=38.51 E-value=2.6e+02 Score=26.47 Aligned_cols=114 Identities=10% Similarity=0.004 Sum_probs=69.8
Q ss_pred CeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHHh--CCC
Q 001292 453 SFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMTF--GIP 528 (1106)
Q Consensus 453 dikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA~--G~P 528 (1106)
.++ ++|+.+.+.. ...++.+.++.+... .|.......+....+. ..|++|+-.... +.-|..+++.+.. .+|
T Consensus 25 ~~~-ILivdd~~~~-~~~l~~~L~~~~~~~-~v~~~~~~~~al~~l~~~~~dlvilD~~l~-~~~g~~l~~~lr~~~~~~ 100 (164)
T 3t8y_A 25 VIR-VLVVDDSAFM-RMVLKDIIDSQPDMK-VVGFAKDGLEAVEKAIELKPDVITMDIEMP-NLNGIEALKLIMKKAPTR 100 (164)
T ss_dssp CEE-EEEECSCHHH-HHHHHHHHHTSTTEE-EEEEESSHHHHHHHHHHHCCSEEEECSSCS-SSCHHHHHHHHHHHSCCE
T ss_pred ccE-EEEEcCCHHH-HHHHHHHHhcCCCeE-EEEecCCHHHHHHHhccCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCce
Confidence 345 5667766542 566677776543221 2334445455544443 368888765543 3457777776543 366
Q ss_pred EEec-CCCC-----chhhhccCCeEEEEcCCC---------HHHHHHHHHHHHhCcc
Q 001292 529 VITP-DFPI-----IKEYVAEGAQVIFFQKDN---------PEGLSRAFSLFISNGK 570 (1106)
Q Consensus 529 VIAS-D~gG-----I~EiV~Dg~nG~LV~~~D---------~eeLAeAI~~LLsDpe 570 (1106)
||.- .... ..+.+..|..+++..|-+ .+++.++|..++....
T Consensus 101 ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~~~~ 157 (164)
T 3t8y_A 101 VIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMNVDP 157 (164)
T ss_dssp EEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTTSCC
T ss_pred EEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhCCCc
Confidence 6643 2221 336677788999998888 6888888888887654
No 159
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=38.33 E-value=48 Score=35.74 Aligned_cols=67 Identities=15% Similarity=0.196 Sum_probs=44.4
Q ss_pred CCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHhCCCEEe
Q 001292 452 GSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVIT 531 (1106)
Q Consensus 452 PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~G~PVIA 531 (1106)
+++.+..++...+ +..+++++++|... ..++.+++..+|++++.+... .-.-.+.+|+..|++|++
T Consensus 30 ~~~~l~av~d~~~----~~~~~~a~~~~~~~--------~~~~~~ll~~~D~V~i~tp~~--~h~~~~~~al~~gk~vl~ 95 (308)
T 3uuw_A 30 ERFEFVGAFTPNK----VKREKICSDYRIMP--------FDSIESLAKKCDCIFLHSSTE--THYEIIKILLNLGVHVYV 95 (308)
T ss_dssp SSSEEEEEECSCH----HHHHHHHHHHTCCB--------CSCHHHHHTTCSEEEECCCGG--GHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEEEECCCH----HHHHHHHHHcCCCC--------cCCHHHHHhcCCEEEEeCCcH--hHHHHHHHHHHCCCcEEE
Confidence 5666333444433 66778888877651 245666677999999876543 334567789999999987
Q ss_pred c
Q 001292 532 P 532 (1106)
Q Consensus 532 S 532 (1106)
-
T Consensus 96 E 96 (308)
T 3uuw_A 96 D 96 (308)
T ss_dssp C
T ss_pred c
Confidence 4
No 160
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=38.16 E-value=2.6e+02 Score=29.43 Aligned_cols=84 Identities=14% Similarity=0.151 Sum_probs=50.9
Q ss_pred CCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHHHHHhHHHHHhhccCccEEEEccccH-H---HH
Q 001292 222 PPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLWEQIAGQISILGQEQYSLIDWSIFDG-I---IA 297 (1106)
Q Consensus 222 ~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r~lg~lvkiIr~~~pDiIh~~~~~~-i---~v 297 (1106)
+.+|+++++++.-.--..++..+.+++++.||++.++.... ......+. +..+...++|-|-+..... . .+
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~----i~~~~~~~vdgiIi~~~~~~~~~~~~ 77 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYADD-DIPNQLSQ----IENMVTKGVKVLVIASIDGTTLSDVL 77 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHH----HHHHHHHTCSEEEECCSSGGGGHHHH
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeCCC-CHHHHHHH----HHHHHHcCCCEEEEEcCCchhHHHHH
Confidence 56899999988665555566777888889999999887432 22222222 2223334678665544332 1 12
Q ss_pred HHHHHHHhhhhcccCCCCCCcEEEE
Q 001292 298 DSLEAKEAISSLMQEPFHSIPLVWI 322 (1106)
Q Consensus 298 ~~La~k~~idII~te~~~gIPVI~t 322 (1106)
..+.. .++|+|..
T Consensus 78 ~~~~~------------~giPvV~~ 90 (330)
T 3uug_A 78 KQAGE------------QGIKVIAY 90 (330)
T ss_dssp HHHHH------------TTCEEEEE
T ss_pred HHHHH------------CCCCEEEE
Confidence 22222 68999877
No 161
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=37.80 E-value=61 Score=32.59 Aligned_cols=106 Identities=14% Similarity=0.037 Sum_probs=67.3
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHH--hCCCEEec
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMT--FGIPVITP 532 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA--~G~PVIAS 532 (1106)
++|+.+.+.. ...+..+.+..|+ .|.......+....+. ..|++++--... +.-|..+++.+. ..+|||+-
T Consensus 7 ilivdd~~~~-~~~l~~~L~~~g~---~v~~~~~~~~al~~~~~~~~dlvllD~~l~-~~~g~~~~~~l~~~~~~~ii~l 81 (230)
T 2oqr_A 7 VLIVEDEESL-ADPLAFLLRKEGF---EATVVTDGPAALAEFDRAGADIVLLDLMLP-GMSGTDVCKQLRARSSVPVIMV 81 (230)
T ss_dssp EEEECSCHHH-HHHHHHHHHHTTC---EEEEECSHHHHHHHHHHHCCSEEEEESSCS-SSCHHHHHHHHHHHCSCSEEEE
T ss_pred EEEEeCCHHH-HHHHHHHHHHCCC---EEEEECCHHHHHHHHhccCCCEEEEECCCC-CCCHHHHHHHHHcCCCCCEEEE
Confidence 4667766643 5667777776665 3555555555555444 368888754442 234677777664 37888864
Q ss_pred -CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 533 -DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 533 -D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
.... ..+.+..|..|++..|.++++|..+|..++.
T Consensus 82 t~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 120 (230)
T 2oqr_A 82 TARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 120 (230)
T ss_dssp ECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHT
T ss_pred eCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 2222 3344556778888888899999998887764
No 162
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=35.88 E-value=1.6e+02 Score=28.74 Aligned_cols=104 Identities=11% Similarity=0.055 Sum_probs=65.1
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCC-cHHHHHHHH---hCCCEEec
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGF-PSLIVRAMT---FGIPVITP 532 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGF-GlvLLEAMA---~G~PVIAS 532 (1106)
++|+.+.+.. ...+.......|+. .+......+-+ -...|++++--... +. |. +++.+. ..+|||.-
T Consensus 15 iLivdd~~~~-~~~l~~~L~~~g~~--v~~~~~~~~al---~~~~dlvl~D~~mp--~~~g~-l~~~~~~~~~~~~ii~l 85 (196)
T 1qo0_D 15 VLVLNPPGEV-SDALVLQLIRIGCS--VRQCWPPPEAF---DVPVDVVFTSIFQN--RHHDE-IAALLAAGTPRTTLVAL 85 (196)
T ss_dssp EEEESCTTHH-HHHHHHHHHHHTCE--EEEECSCCSSC---SSCCSEEEEECCSS--THHHH-HHHHHHHSCTTCEEEEE
T ss_pred EEEEcCChhH-HHHHHHHHHHcCCe--EEEecCchhhC---CCCCCEEEEeCCCC--ccchH-HHHHHhccCCCCCEEEE
Confidence 5677777653 56777777777764 23222222211 12578888754432 22 44 666655 45888863
Q ss_pred -CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHhCc
Q 001292 533 -DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNG 569 (1106)
Q Consensus 533 -D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDp 569 (1106)
.... ..+.+..|..+++..|-++++|..+|..++...
T Consensus 86 t~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 126 (196)
T 1qo0_D 86 VEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRIS 126 (196)
T ss_dssp ECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHH
T ss_pred EcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHH
Confidence 3332 345566688999999999999999999887643
No 163
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=35.45 E-value=2.1e+02 Score=29.48 Aligned_cols=87 Identities=13% Similarity=0.201 Sum_probs=52.3
Q ss_pred CCCCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHHHHHhHHHHHhhccCccEEEEccccHHHHHH
Q 001292 220 VRPPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLWEQIAGQISILGQEQYSLIDWSIFDGIIADS 299 (1106)
Q Consensus 220 ~r~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r~lg~lvkiIr~~~pDiIh~~~~~~i~v~~ 299 (1106)
.+..+|+++++++.-.--..++..+.+++.+.||++.++..... .....+ .+..+...++|-+-+..... ..
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~-~~~~~~----~~~~l~~~~vdgiIi~~~~~--~~- 76 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANAD-IEREKT----LLRAIGSRGFDGLILQSFSN--PQ- 76 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTTC-HHHHHH----HHHHHHTTTCSEEEEESSCC--HH-
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCC-HHHHHH----HHHHHHhCCCCEEEEecCCc--HH-
Confidence 35578999999875544455666677888889999999776542 221111 24444556788555543333 11
Q ss_pred HHHHHhhhhcccCCCCCCcEEEE
Q 001292 300 LEAKEAISSLMQEPFHSIPLVWI 322 (1106)
Q Consensus 300 La~k~~idII~te~~~gIPVI~t 322 (1106)
...+.. ..++|+|..
T Consensus 77 ~~~~l~--------~~~iPvV~i 91 (276)
T 3jy6_A 77 TVQEIL--------HQQMPVVSV 91 (276)
T ss_dssp HHHHHH--------TTSSCEEEE
T ss_pred HHHHHH--------HCCCCEEEE
Confidence 111111 268999877
No 164
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=35.15 E-value=63 Score=29.83 Aligned_cols=100 Identities=10% Similarity=0.017 Sum_probs=53.7
Q ss_pred EEEEcCCCCccHHHHHHHHHHc-CCCCCcEEEcCChhhHHHHHH---HcCeEEEccCCCCCCCcHHHHHHHHh--CCCEE
Q 001292 457 VFLCGNSTDGYNDALQEVASRL-GLLEHSVRHYGFNGDVNGVLL---MADIVLYGSSQVEQGFPSLIVRAMTF--GIPVI 530 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaekl-GL~d~rV~flG~~eDL~~Lya---aADVfV~PS~~EeEGFGlvLLEAMA~--G~PVI 530 (1106)
++|+.+.+.. ...++.+.++. |+. .|.......+....+. ..|++|+--... +.-|..+++.+.. ..|+|
T Consensus 16 vlivdd~~~~-~~~l~~~L~~~~~~~--~v~~~~~~~~al~~l~~~~~~dlvilD~~l~-~~~g~~~~~~lr~~~~~~ii 91 (145)
T 3kyj_B 16 VMIVDDAAMM-RLYIASFIKTLPDFK--VVAQAANGQEALDKLAAQPNVDLILLDIEMP-VMDGMEFLRHAKLKTRAKIC 91 (145)
T ss_dssp EEEECSCHHH-HHHHHHHHTTCTTEE--EEEEESSHHHHHHHHHHCTTCCEEEECTTSC-CCTTCHHHHHHHHHCCCEEC
T ss_pred EEEEcCCHHH-HHHHHHHHHhCCCce--EEEEECCHHHHHHHHhcCCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCCCeE
Confidence 5666666542 45566666544 322 2334445556555554 368988765443 3457777776552 34444
Q ss_pred ecC---C---CCchhhhccCCeEEEEcCCCHHHHHH
Q 001292 531 TPD---F---PIIKEYVAEGAQVIFFQKDNPEGLSR 560 (1106)
Q Consensus 531 ASD---~---gGI~EiV~Dg~nG~LV~~~D~eeLAe 560 (1106)
.-- . ....+.+..|..+++..|-++++|..
T Consensus 92 il~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~ 127 (145)
T 3kyj_B 92 MLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDL 127 (145)
T ss_dssp -CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC----
T ss_pred EEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHH
Confidence 321 1 12345667788889888877554433
No 165
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=35.12 E-value=90 Score=34.98 Aligned_cols=67 Identities=16% Similarity=0.205 Sum_probs=43.5
Q ss_pred CCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHhCCCE
Q 001292 452 GSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTFGIPV 529 (1106)
Q Consensus 452 PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~G~PV 529 (1106)
+++++.-++...+ +..+++++++|+.- ..++.+++.. .|++++.+... .-.-.+++|+..|++|
T Consensus 26 ~~~~l~av~d~~~----~~~~~~a~~~g~~~--------~~~~~ell~~~~vD~V~i~tp~~--~H~~~~~~al~aGk~V 91 (387)
T 3moi_A 26 PDAQIVAACDPNE----DVRERFGKEYGIPV--------FATLAEMMQHVQMDAVYIASPHQ--FHCEHVVQASEQGLHI 91 (387)
T ss_dssp TTEEEEEEECSCH----HHHHHHHHHHTCCE--------ESSHHHHHHHSCCSEEEECSCGG--GHHHHHHHHHHTTCEE
T ss_pred CCeEEEEEEeCCH----HHHHHHHHHcCCCe--------ECCHHHHHcCCCCCEEEEcCCcH--HHHHHHHHHHHCCCce
Confidence 5666333443333 56677788776541 2467777776 89999876432 2234678999999999
Q ss_pred Eec
Q 001292 530 ITP 532 (1106)
Q Consensus 530 IAS 532 (1106)
++-
T Consensus 92 l~E 94 (387)
T 3moi_A 92 IVE 94 (387)
T ss_dssp EEC
T ss_pred eee
Confidence 864
No 166
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=34.95 E-value=2e+02 Score=29.32 Aligned_cols=84 Identities=13% Similarity=0.160 Sum_probs=50.8
Q ss_pred CCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHHHHHhHHHHHhhccCccEEEEcccc---HHHHH
Q 001292 222 PPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLWEQIAGQISILGQEQYSLIDWSIFD---GIIAD 298 (1106)
Q Consensus 222 ~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r~lg~lvkiIr~~~pDiIh~~~~~---~i~v~ 298 (1106)
..+|+++++++.-.--..++..+.+++.+.||++.++..... .....+ .+..+...++|-+-+.... ...+.
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~~~~----~~~~l~~~~vdgiIi~~~~~~~~~~~~ 76 (272)
T 3o74_A 2 TRTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASSDDQ-PDSERQ----LQQLFRARRCDALFVASCLPPEDDSYR 76 (272)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECTTC-HHHHHH----HHHHHHHTTCSEEEECCCCCSSCCHHH
T ss_pred ceEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeCCCC-HHHHHH----HHHHHHHcCCCEEEEecCccccHHHHH
Confidence 467999999876544555667777888889999999865432 222222 2334444577755553322 22333
Q ss_pred HHHHHHhhhhcccCCCCCCcEEEE
Q 001292 299 SLEAKEAISSLMQEPFHSIPLVWI 322 (1106)
Q Consensus 299 ~La~k~~idII~te~~~gIPVI~t 322 (1106)
.+.. .++|+|..
T Consensus 77 ~~~~------------~~iPvV~~ 88 (272)
T 3o74_A 77 ELQD------------KGLPVIAI 88 (272)
T ss_dssp HHHH------------TTCCEEEE
T ss_pred HHHH------------cCCCEEEE
Confidence 3333 67899876
No 167
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=34.65 E-value=84 Score=32.62 Aligned_cols=107 Identities=13% Similarity=0.085 Sum_probs=68.9
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHh--CCCEEec
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF--GIPVITP 532 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~--G~PVIAS 532 (1106)
++|+.+.+.. ...++.+.+..|. .|.......+....+.. .|++|+--... +.-|..+++.+.. .+|||+-
T Consensus 40 ILivdd~~~~-~~~l~~~L~~~g~---~v~~~~~~~~al~~~~~~~~DlvllD~~lp-~~~G~~l~~~lr~~~~~~iI~l 114 (249)
T 3q9s_A 40 ILVIEDDHDI-ANVLRMDLTDAGY---VVDHADSAMNGLIKAREDHPDLILLDLGLP-DFDGGDVVQRLRKNSALPIIVL 114 (249)
T ss_dssp EEEECSCHHH-HHHHHHHHHTTTC---EEEEESSHHHHHHHHHHSCCSEEEEECCSC-HHHHHHHHHHHHTTCCCCEEEE
T ss_pred EEEEECCHHH-HHHHHHHHHHCCC---EEEEeCCHHHHHHHHhcCCCCEEEEcCCCC-CCCHHHHHHHHHcCCCCCEEEE
Confidence 5667666542 5666776665553 35555555555555543 68888754432 1336666666653 4788764
Q ss_pred -CCC---CchhhhccCCeEEEEcCCCHHHHHHHHHHHHhC
Q 001292 533 -DFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISN 568 (1106)
Q Consensus 533 -D~g---GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsD 568 (1106)
... ...+.+..|..|++..+.++++|..+|..++..
T Consensus 115 t~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~ 154 (249)
T 3q9s_A 115 TARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQ 154 (249)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred ECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhh
Confidence 322 234556678899999999999999999988764
No 168
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=34.52 E-value=1.6e+02 Score=30.07 Aligned_cols=84 Identities=12% Similarity=0.123 Sum_probs=50.8
Q ss_pred CEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcC-CCCchHHHHHHhHHHHHhhccC-ccEEEEcccc----HHH
Q 001292 223 PRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVR-SGNSHSLWEQIAGQISILGQEQ-YSLIDWSIFD----GII 296 (1106)
Q Consensus 223 ~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~-dg~~~~i~r~lg~lvkiIr~~~-pDiIh~~~~~----~i~ 296 (1106)
++|+++++++.-.--...+..+.+++.+.|+++.++... ........+. +..+...+ +|-+-+.... ...
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~----i~~l~~~~~vdgii~~~~~~~~~~~~ 76 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQI----LSYHLSQAPPDALILAPNSAEDLTPS 76 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHH----HHHHHHHSCCSEEEECCSSTTTTHHH
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHH----HHHHHHhCCCCEEEEeCCCHHHHHHH
Confidence 478999998776556666777888888899999987643 2222222222 22333335 8866654432 222
Q ss_pred HHHHHHHHhhhhcccCCCCCCcEEEE
Q 001292 297 ADSLEAKEAISSLMQEPFHSIPLVWI 322 (1106)
Q Consensus 297 v~~La~k~~idII~te~~~gIPVI~t 322 (1106)
+..+.. .++|+|..
T Consensus 77 ~~~~~~------------~~ipvV~~ 90 (276)
T 3ksm_A 77 VAQYRA------------RNIPVLVV 90 (276)
T ss_dssp HHHHHH------------TTCCEEEE
T ss_pred HHHHHH------------CCCcEEEE
Confidence 333322 68899887
No 169
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=34.33 E-value=1.8e+02 Score=30.52 Aligned_cols=84 Identities=13% Similarity=0.154 Sum_probs=51.0
Q ss_pred CCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHHHHHhHHHHHhhccCccEEEEccccH----HHH
Q 001292 222 PPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLWEQIAGQISILGQEQYSLIDWSIFDG----IIA 297 (1106)
Q Consensus 222 ~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r~lg~lvkiIr~~~pDiIh~~~~~~----i~v 297 (1106)
+.+|+++++++.-.--..++..+.+++.+.||++.++.... ......+. +..+...++|-|-+..... ..+
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~----i~~l~~~~vdgiIi~~~~~~~~~~~~ 76 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANG-NEETQMSQ----IENMINRGVDVLVIIPYNGQVLSNVV 76 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEECTT-CHHHHHHH----HHHHHHTTCSEEEEECSSTTSCHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCC-CHHHHHHH----HHHHHHcCCCEEEEeCCChhhhHHHH
Confidence 46899999987665556677778888999999999886643 22222222 3334445778555533322 222
Q ss_pred HHHHHHHhhhhcccCCCCCCcEEEE
Q 001292 298 DSLEAKEAISSLMQEPFHSIPLVWI 322 (1106)
Q Consensus 298 ~~La~k~~idII~te~~~gIPVI~t 322 (1106)
..+. ..++|+|..
T Consensus 77 ~~~~------------~~~iPvV~~ 89 (313)
T 3m9w_A 77 KEAK------------QEGIKVLAY 89 (313)
T ss_dssp HHHH------------TTTCEEEEE
T ss_pred HHHH------------HCCCeEEEE
Confidence 2222 268999877
No 170
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=34.19 E-value=55 Score=36.01 Aligned_cols=67 Identities=15% Similarity=0.187 Sum_probs=43.3
Q ss_pred CCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHhCCCE
Q 001292 452 GSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTFGIPV 529 (1106)
Q Consensus 452 PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~G~PV 529 (1106)
+++++.-|+...+ +..+++++++|.+. + ..++.++++. .|++++.+-.. .-.-.+++|+..|++|
T Consensus 55 ~~~~lvav~d~~~----~~a~~~a~~~g~~~--~-----y~d~~ell~~~~iDaV~IatP~~--~H~~~a~~al~aGkhV 121 (393)
T 4fb5_A 55 ERPRLVHLAEANA----GLAEARAGEFGFEK--A-----TADWRALIADPEVDVVSVTTPNQ--FHAEMAIAALEAGKHV 121 (393)
T ss_dssp CCCEEEEEECC------TTHHHHHHHHTCSE--E-----ESCHHHHHHCTTCCEEEECSCGG--GHHHHHHHHHHTTCEE
T ss_pred CCcEEEEEECCCH----HHHHHHHHHhCCCe--e-----cCCHHHHhcCCCCcEEEECCChH--HHHHHHHHHHhcCCeE
Confidence 5666444555455 34677888888762 2 2467777764 68888765432 3345688999999999
Q ss_pred Ee
Q 001292 530 IT 531 (1106)
Q Consensus 530 IA 531 (1106)
++
T Consensus 122 l~ 123 (393)
T 4fb5_A 122 WC 123 (393)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 171
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=33.98 E-value=1.7e+02 Score=30.19 Aligned_cols=85 Identities=15% Similarity=0.096 Sum_probs=49.3
Q ss_pred CCCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHHHHHhHHHHHhhccCccEEEEcccc-H---HH
Q 001292 221 RPPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLWEQIAGQISILGQEQYSLIDWSIFD-G---II 296 (1106)
Q Consensus 221 r~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r~lg~lvkiIr~~~pDiIh~~~~~-~---i~ 296 (1106)
+..+|+++++++.-.--..++..+.+++.+.||++.++..... .....+. +..+...++|-|-+.... . ..
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~~~~~----~~~l~~~~vdgiI~~~~~~~~~~~~ 81 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQNS-RISEREQ----ILEFVHLKVDAIFITTLDDVYIGSA 81 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSSC-HHHHHHH----HHHHHHTTCSEEEEECSCTTTTHHH
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCC-HHHHHHH----HHHHHHcCCCEEEEecCChHHHHHH
Confidence 4568999999876544455566677888889999998865432 2222222 333344577755443222 2 22
Q ss_pred HHHHHHHHhhhhcccCCCCCCcEEEE
Q 001292 297 ADSLEAKEAISSLMQEPFHSIPLVWI 322 (1106)
Q Consensus 297 v~~La~k~~idII~te~~~gIPVI~t 322 (1106)
+..+.. .++|+|..
T Consensus 82 ~~~~~~------------~~iPvV~~ 95 (293)
T 3l6u_A 82 IEEAKK------------AGIPVFAI 95 (293)
T ss_dssp HHHHHH------------TTCCEEEE
T ss_pred HHHHHH------------cCCCEEEe
Confidence 332222 68898887
No 172
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=33.52 E-value=2.2e+02 Score=30.64 Aligned_cols=92 Identities=7% Similarity=0.016 Sum_probs=51.6
Q ss_pred CCCEEEEEeCCCCCCh-hHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHHHHHhHHHHHhhc-cCccEEEEccccHHHHH
Q 001292 221 RPPRIGLILGNMAKDS-RSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLWEQIAGQISILGQ-EQYSLIDWSIFDGIIAD 298 (1106)
Q Consensus 221 r~~RIalVlg~L~~gG-esl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r~lg~lvkiIr~-~~pDiIh~~~~~~i~v~ 298 (1106)
.+++|+++++++.-++ -..+...+.+++++.|+++.++.... ......+. +..++.. .++|.|-+.........
T Consensus 2 ~~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~-~~~~~~~~---i~~~i~~~~~vDgiIi~~~~~~~~~ 77 (350)
T 3h75_A 2 SLTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYAER-DPQNTLQQ---ARELFQGRDKPDYLMLVNEQYVAPQ 77 (350)
T ss_dssp -CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEECTT-CHHHHHHH---HHHHHHSSSCCSEEEEECCSSHHHH
T ss_pred CCCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEECCC-CHHHHHHH---HHHHHhcCCCCCEEEEeCchhhHHH
Confidence 4678999999976533 34455566677778899999885543 22221122 3344444 57885555432222222
Q ss_pred HHHHHHhhhhcccCCCCCCcEEEEEcC
Q 001292 299 SLEAKEAISSLMQEPFHSIPLVWIIQE 325 (1106)
Q Consensus 299 ~La~k~~idII~te~~~gIPVI~tIHn 325 (1106)
...+.. ..++|+|..-..
T Consensus 78 -~~~~~~--------~~giPvV~~~~~ 95 (350)
T 3h75_A 78 -ILRLSQ--------GSGIKLFIVNSP 95 (350)
T ss_dssp -HHHHHT--------TSCCEEEEEESC
T ss_pred -HHHHHH--------hCCCcEEEEcCC
Confidence 222221 368999987443
No 173
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=33.47 E-value=73 Score=36.54 Aligned_cols=73 Identities=18% Similarity=0.030 Sum_probs=44.7
Q ss_pred CCeEEEEEEcCCCCccHHHHHHHHH---HcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHHhC
Q 001292 452 GSFKFVFLCGNSTDGYNDALQEVAS---RLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMTFG 526 (1106)
Q Consensus 452 PdikfLIIVG~GperY~eeLkeLae---klGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA~G 526 (1106)
+++.+.-++...+ +..+++++ ++|++. .-.+.+..+++.+++. ..|++++.+... .-.-.+++||..|
T Consensus 43 ~~~~lvav~d~~~----~~~~~~a~~~~~~g~~~-~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~--~h~~~~~~al~aG 115 (444)
T 2ixa_A 43 DDVEIVAFADPDP----YMVGRAQEILKKNGKKP-AKVFGNGNDDYKNMLKDKNIDAVFVSSPWE--WHHEHGVAAMKAG 115 (444)
T ss_dssp TTEEEEEEECSCH----HHHHHHHHHHHHTTCCC-CEEECSSTTTHHHHTTCTTCCEEEECCCGG--GHHHHHHHHHHTT
T ss_pred CCcEEEEEEeCCH----HHHHHHHHHHHhcCCCC-CceeccCCCCHHHHhcCCCCCEEEEcCCcH--HHHHHHHHHHHCC
Confidence 6676444555444 34444444 456653 2234433347888887 489888876432 3345677899999
Q ss_pred CCEEe
Q 001292 527 IPVIT 531 (1106)
Q Consensus 527 ~PVIA 531 (1106)
++|++
T Consensus 116 khV~~ 120 (444)
T 2ixa_A 116 KIVGM 120 (444)
T ss_dssp CEEEE
T ss_pred CeEEE
Confidence 99987
No 174
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=32.39 E-value=1.8e+02 Score=28.86 Aligned_cols=111 Identities=10% Similarity=0.022 Sum_probs=67.3
Q ss_pred eEEEEEEcCCCCccHHHHHHHHHHcCCCCCcE-EEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHh---CC
Q 001292 454 FKFVFLCGNSTDGYNDALQEVASRLGLLEHSV-RHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF---GI 527 (1106)
Q Consensus 454 ikfLIIVG~GperY~eeLkeLaeklGL~d~rV-~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~---G~ 527 (1106)
.+ ++|+.+.+.. ...++.+.+..+ +-.| .......+....+.. .|++++--... +.-|..+++.+.. .+
T Consensus 6 ~~-ilivdd~~~~-~~~l~~~L~~~~--~~~vv~~~~~~~~al~~~~~~~~dlvllD~~lp-~~~g~~~~~~lr~~~~~~ 80 (215)
T 1a04_A 6 AT-ILLIDDHPML-RTGVKQLISMAP--DITVVGEASNGEQGIELAESLDPDLILLDLNMP-GMNGLETLDKLREKSLSG 80 (215)
T ss_dssp EE-EEEECSCHHH-HHHHHHHHTTCT--TEEEEEEESSHHHHHHHHHHHCCSEEEEETTST-TSCHHHHHHHHHHSCCCS
T ss_pred eE-EEEECCCHHH-HHHHHHHHhcCC--CcEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCC-CCcHHHHHHHHHHhCCCC
Confidence 45 5667776542 445555554332 1023 333444455444443 68888754442 2347777777653 46
Q ss_pred CEEec-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHhCc
Q 001292 528 PVITP-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNG 569 (1106)
Q Consensus 528 PVIAS-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDp 569 (1106)
|||.- .... ..+.+..|..|++..|.++++|..+|..++...
T Consensus 81 ~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 126 (215)
T 1a04_A 81 RIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGE 126 (215)
T ss_dssp EEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSC
T ss_pred cEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCC
Confidence 77653 3322 345566788999999999999999999988754
No 175
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=32.07 E-value=2.6e+02 Score=29.12 Aligned_cols=110 Identities=16% Similarity=0.125 Sum_probs=69.1
Q ss_pred CeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH---cCeEEEccCCCCCCCcHHHHHHHHh----
Q 001292 453 SFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM---ADIVLYGSSQVEQGFPSLIVRAMTF---- 525 (1106)
Q Consensus 453 dikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa---ADVfV~PS~~EeEGFGlvLLEAMA~---- 525 (1106)
..+ ++|+-+.+.. ...+....+..|. .|.....-.+...++.. .|++++--..- +.-|..+++.+-.
T Consensus 124 ~~~-ILivDD~~~~-~~~l~~~L~~~~~---~v~~a~~~~eal~~l~~~~~~dlvllD~~mP-~~dG~~l~~~lr~~~~~ 197 (259)
T 3luf_A 124 QIE-VLVVDDSRTS-RHRTMAQLRKQLL---QVHEASHAREALATLEQHPAIRLVLVDYYMP-EIDGISLVRMLRERYSK 197 (259)
T ss_dssp TCE-EEEECSCHHH-HHHHHHHHHTTTC---EEEEESSHHHHHHHHHHCTTEEEEEECSCCS-SSCHHHHHHHHHHHCCT
T ss_pred CCc-EEEEeCCHHH-HHHHHHHHHHcCc---EEEEeCCHHHHHHHHhcCCCCCEEEEcCCCC-CCCHHHHHHHHHhccCC
Confidence 345 5667666542 3455555554443 45555555566666653 47777643332 2347778777643
Q ss_pred -CCCEEe-cCCC---CchhhhccCCeEEEEcCCCHHHHHHHHHHHHhC
Q 001292 526 -GIPVIT-PDFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISN 568 (1106)
Q Consensus 526 -G~PVIA-SD~g---GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsD 568 (1106)
.+|||+ |... ...+.+..|..+++..|-++++|...|..+++.
T Consensus 198 ~~~~ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~ 245 (259)
T 3luf_A 198 QQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEA 245 (259)
T ss_dssp TTSEEEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHh
Confidence 478874 3222 234556778899999999999999999988763
No 176
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=31.21 E-value=1.3e+02 Score=32.87 Aligned_cols=55 Identities=22% Similarity=0.247 Sum_probs=39.0
Q ss_pred HHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHHhCCCEEec
Q 001292 469 DALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP 532 (1106)
Q Consensus 469 eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS 532 (1106)
+..+++++++|... ...++.+++. .+|++++.+... .-.-.+.+|+..|++|++-
T Consensus 41 ~~~~~~~~~~~~~~-------~~~~~~~ll~~~~~D~V~i~tp~~--~h~~~~~~al~~gk~vl~E 97 (330)
T 3e9m_A 41 ENAQKMAKELAIPV-------AYGSYEELCKDETIDIIYIPTYNQ--GHYSAAKLALSQGKPVLLE 97 (330)
T ss_dssp HHHHHHHHHTTCCC-------CBSSHHHHHHCTTCSEEEECCCGG--GHHHHHHHHHHTTCCEEEC
T ss_pred HHHHHHHHHcCCCc-------eeCCHHHHhcCCCCCEEEEcCCCH--HHHHHHHHHHHCCCeEEEe
Confidence 66778888877642 1357778887 789988765432 2334577899999999874
No 177
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=31.03 E-value=33 Score=30.37 Aligned_cols=106 Identities=14% Similarity=0.081 Sum_probs=63.5
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHH---HhCCCEEe
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAM---TFGIPVIT 531 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAM---A~G~PVIA 531 (1106)
++++.+.+.. ...+.......|.. |.......+....+.. .|++++--... ..-|..+++.+ ..++|||+
T Consensus 6 ilivdd~~~~-~~~l~~~l~~~~~~---v~~~~~~~~~~~~~~~~~~dlvi~d~~~~-~~~g~~~~~~l~~~~~~~~ii~ 80 (124)
T 1dc7_A 6 VWVVDDDSSI-RWVLERALAGAGLT---CTTFENGNEVLAALASKTPDVLLSDIRMP-GMDGLALLKQIKQRHPMLPVII 80 (124)
T ss_dssp CEEECSSSSH-HHHHHHHHTTTTCC---CEECCCTTHHHHHSSSCCCSCEEECSCSS-HHHHCSTHHHHHHHCTTSCCCC
T ss_pred EEEEeCCHHH-HHHHHHHHHhCCcE---EEEeCCHHHHHHHHhcCCCCEEEEeeecC-CCCHHHHHHHHHhhCCCCCEEE
Confidence 4567776653 56666766655543 4555555555555543 68888654331 11123334443 23578775
Q ss_pred c-CC---CCchhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 532 P-DF---PIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 532 S-D~---gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
- .. ....+.+..|..+++..|-++++|..+|..++.
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 120 (124)
T 1dc7_A 81 MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 (124)
T ss_dssp BCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHH
Confidence 3 22 233455566778888888999999999988764
No 178
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=30.37 E-value=3.9e+02 Score=28.54 Aligned_cols=107 Identities=15% Similarity=0.143 Sum_probs=67.9
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEE-EcCChhhHHHHHHH--cCeEEE----ccCCCCCCCc-HHHHHHHHhCCC
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVR-HYGFNGDVNGVLLM--ADIVLY----GSSQVEQGFP-SLIVRAMTFGIP 528 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~-flG~~eDL~~Lyaa--ADVfV~----PS~~EeEGFG-lvLLEAMA~G~P 528 (1106)
++++-+.+.. ...++.+.+..|+. |. ....-.+....+.. .|++++ |.... |+- ...+-+.. .+|
T Consensus 163 ILvVdD~~~~-~~~l~~~L~~~g~~---v~~~a~~g~eAl~~~~~~~~dlvl~D~~MPd~md--G~e~~~~ir~~~-~~p 235 (286)
T 3n0r_A 163 VLIIEDEPVI-AADIEALVRELGHD---VTDIAATRGEALEAVTRRTPGLVLADIQLADGSS--GIDAVKDILGRM-DVP 235 (286)
T ss_dssp EEEECCSHHH-HHHHHHHHHHTTCE---EEEEESSHHHHHHHHHHCCCSEEEEESCCTTSCC--TTTTTHHHHHHT-TCC
T ss_pred EEEEcCCHHH-HHHHHHHhhccCce---EEEEeCCHHHHHHHHHhCCCCEEEEcCCCCCCCC--HHHHHHHHHhcC-CCC
Confidence 5667776653 57777888877764 55 45555555555554 688885 51122 221 22233333 899
Q ss_pred EEec-CCC-CchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcc
Q 001292 529 VITP-DFP-IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGK 570 (1106)
Q Consensus 529 VIAS-D~g-GI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpe 570 (1106)
||+- ..+ ...+.+..|.++++..|-++++|..+|..++....
T Consensus 236 iI~lT~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~~ 279 (286)
T 3n0r_A 236 VIFITAFPERLLTGERPEPTFLITKPFQPETVKAAIGQALFFHP 279 (286)
T ss_dssp EEEEESCGGGGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHSC
T ss_pred EEEEeCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 9974 222 23344556778899999999999999999987543
No 179
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=30.24 E-value=3e+02 Score=28.54 Aligned_cols=89 Identities=11% Similarity=-0.102 Sum_probs=47.0
Q ss_pred CCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHHHHHhHHHHHhhccCccEEEEccccHHHHHHHH
Q 001292 222 PPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLWEQIAGQISILGQEQYSLIDWSIFDGIIADSLE 301 (1106)
Q Consensus 222 ~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r~lg~lvkiIr~~~pDiIh~~~~~~i~v~~La 301 (1106)
..+|++++++..-.--..++..+.+++++.|+++.++............. +..+...++|.+-+............
T Consensus 4 ~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~l~~~~vdgiii~~~~~~~~~~~~ 79 (303)
T 3d02_A 4 EKTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVGPSSTDAPQQVKI----IEDLIARKVDAITIVPNDANVLEPVF 79 (303)
T ss_dssp CEEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEECCSSSCHHHHHHH----HHHHHHTTCSEEEECCSCHHHHHHHH
T ss_pred ceEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHH----HHHHHHcCCCEEEEecCChHHHHHHH
Confidence 45788988876543334455566777888999988665333222222222 22233356786655443332211111
Q ss_pred HHHhhhhcccCCCCCCcEEEE
Q 001292 302 AKEAISSLMQEPFHSIPLVWI 322 (1106)
Q Consensus 302 ~k~~idII~te~~~gIPVI~t 322 (1106)
.... ..++|+|..
T Consensus 80 ~~~~--------~~~ipvV~~ 92 (303)
T 3d02_A 80 KKAR--------DAGIVVLTN 92 (303)
T ss_dssp HHHH--------HTTCEEEEE
T ss_pred HHHH--------HCCCeEEEE
Confidence 1111 157898876
No 180
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=29.88 E-value=89 Score=31.49 Aligned_cols=39 Identities=21% Similarity=0.235 Sum_probs=35.0
Q ss_pred CCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEc
Q 001292 222 PPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAV 260 (1106)
Q Consensus 222 ~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~ 260 (1106)
.+++++++|.=.+--+.-.++-++..|+++|++|+|-+.
T Consensus 6 ~m~~LilLGCPE~Pvq~p~~lYl~~~Lk~~G~~v~VA~n 44 (157)
T 1kjn_A 6 TGKALMVLGCPESPVQIPLAIYTSHKLKKKGFRVTVTAN 44 (157)
T ss_dssp CCEEEEECCCSCSTTHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred ceeeeEEecCCCCcchhhHHHHHHHHHHhcCCeeEEecC
Confidence 578999999988888888999999999999999999754
No 181
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=29.34 E-value=3.6e+02 Score=27.68 Aligned_cols=85 Identities=14% Similarity=0.192 Sum_probs=51.5
Q ss_pred CCCEEEEEeCC-----CCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHHHHHhHHHHHhhccCccEEEEcccc--
Q 001292 221 RPPRIGLILGN-----MAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLWEQIAGQISILGQEQYSLIDWSIFD-- 293 (1106)
Q Consensus 221 r~~RIalVlg~-----L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r~lg~lvkiIr~~~pDiIh~~~~~-- 293 (1106)
+..+|++++++ +.-.--..++..+.+++.+.||.+.++.... ..... ......+...++|-+-+....
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~----~~~~~~~~~~~vdgiIi~~~~~~ 81 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGET-EEEIF----NGVVKMVQGRQIGGIILLYSREN 81 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCCCS-HHHHH----HHHHHHHHTTCCCEEEESCCBTT
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEeCCC-CHHHH----HHHHHHHHcCCCCEEEEeCCCCC
Confidence 45689999998 6555555666777888899999998864432 11111 113455555678865553322
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCCcEEEE
Q 001292 294 GIIADSLEAKEAISSLMQEPFHSIPLVWI 322 (1106)
Q Consensus 294 ~i~v~~La~k~~idII~te~~~gIPVI~t 322 (1106)
...+..+.. .++|+|..
T Consensus 82 ~~~~~~l~~------------~~iPvV~~ 98 (292)
T 3k4h_A 82 DRIIQYLHE------------QNFPFVLI 98 (292)
T ss_dssp CHHHHHHHH------------TTCCEEEE
T ss_pred hHHHHHHHH------------CCCCEEEE
Confidence 222333322 68899876
No 182
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=29.18 E-value=93 Score=34.39 Aligned_cols=67 Identities=18% Similarity=0.102 Sum_probs=43.4
Q ss_pred CCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHHhCCCE
Q 001292 452 GSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMTFGIPV 529 (1106)
Q Consensus 452 PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA~G~PV 529 (1106)
+++.+.-++...+ +..+++++++|+.. ..++.+++. ..|++++.+... .-.-.+.+|+..|++|
T Consensus 51 ~~~~l~av~d~~~----~~~~~~a~~~g~~~--------~~~~~~ll~~~~~D~V~i~tp~~--~h~~~~~~al~aGk~V 116 (350)
T 3rc1_A 51 PLTEVTAIASRRW----DRAKRFTERFGGEP--------VEGYPALLERDDVDAVYVPLPAV--LHAEWIDRALRAGKHV 116 (350)
T ss_dssp TTEEEEEEEESSH----HHHHHHHHHHCSEE--------EESHHHHHTCTTCSEEEECCCGG--GHHHHHHHHHHTTCEE
T ss_pred CCeEEEEEEcCCH----HHHHHHHHHcCCCC--------cCCHHHHhcCCCCCEEEECCCcH--HHHHHHHHHHHCCCcE
Confidence 5666333444433 56777888777641 156777776 489988865432 2344677899999998
Q ss_pred Eec
Q 001292 530 ITP 532 (1106)
Q Consensus 530 IAS 532 (1106)
++=
T Consensus 117 l~E 119 (350)
T 3rc1_A 117 LAE 119 (350)
T ss_dssp EEE
T ss_pred EEe
Confidence 863
No 183
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=27.77 E-value=85 Score=29.19 Aligned_cols=71 Identities=11% Similarity=0.123 Sum_probs=45.9
Q ss_pred EEEEEEcCCCCc--cHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHh--CCCEE
Q 001292 455 KFVFLCGNSTDG--YNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTF--GIPVI 530 (1106)
Q Consensus 455 kfLIIVG~Gper--Y~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~--G~PVI 530 (1106)
+.|+++|.|-.. ..+.+++.+++.|++- .|...+ ..++...+..+|+++++... .+-..-++..+- ++|||
T Consensus 5 kIll~Cg~G~sTS~l~~k~~~~~~~~gi~~-~i~a~~-~~~~~~~~~~~Dvil~~pqv---~~~~~~~~~~~~~~~v~vI 79 (106)
T 1e2b_A 5 HIYLFSSAGMSTSLLVSKMRAQAEKYEVPV-IIEAFP-ETLAGEKGQNADVVLLGPQI---AYMLPEIQRLLPNKPVEVI 79 (106)
T ss_dssp EEEEECSSSTTTHHHHHHHHHHHHHSCCSE-EEEEEC-SSSTTHHHHHCSEEEECTTS---GGGHHHHHHHSSSSCCCBC
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHCCCCe-EEEEec-HHHHHhhccCCCEEEEccch---hhhHHHHHHHhcCCCceEE
Confidence 357888887532 3467788899999974 454444 34566677889999987654 445555555543 44444
No 184
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=27.44 E-value=2.8e+02 Score=31.16 Aligned_cols=108 Identities=16% Similarity=0.035 Sum_probs=69.1
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHH---hCCCEEe
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMT---FGIPVIT 531 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA---~G~PVIA 531 (1106)
++|+.+.+.. ...++...+..|+ .|.......+...++.. .|++++--... +.-|..+++.+. ..+|||+
T Consensus 3 ILIVDDd~~~-~~~l~~~L~~~g~---~v~~a~~~~eal~~l~~~~~DlvllD~~mp-~~dG~ell~~lr~~~~~~pvIv 77 (387)
T 1ny5_A 3 VLVIEDDKVF-RGLLEEYLSMKGI---KVESAERGKEAYKLLSEKHFNVVLLDLLLP-DVNGLEILKWIKERSPETEVIV 77 (387)
T ss_dssp EEEECCCHHH-HHHHHHHHHHHTC---EEEEESSHHHHHHHHHHSCCSEEEEESBCS-SSBHHHHHHHHHHHCTTSEEEE
T ss_pred EEEEECCHHH-HHHHHHHHHHCCC---EEEEECCHHHHHHHHHhCCCCEEEEeCCCC-CCCHHHHHHHHHhhCCCCcEEE
Confidence 4556665542 4666666666665 35555555555555543 58888643332 234677777664 3577775
Q ss_pred c-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHhCc
Q 001292 532 P-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNG 569 (1106)
Q Consensus 532 S-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDp 569 (1106)
- ..+. ..+.+..|..+++..|-+.++|..+|..++...
T Consensus 78 lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 119 (387)
T 1ny5_A 78 ITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHR 119 (387)
T ss_dssp EEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHH
Confidence 3 3333 345566788999999999999999999988643
No 185
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=27.28 E-value=1.3e+02 Score=33.10 Aligned_cols=71 Identities=13% Similarity=0.062 Sum_probs=44.5
Q ss_pred CCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHHhCCCE
Q 001292 452 GSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMTFGIPV 529 (1106)
Q Consensus 452 PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA~G~PV 529 (1106)
+++.+..++...+ +..+++++++|++. .+... .++.+++. .+|+++..+... .-.-.+.+|+..|++|
T Consensus 29 ~~~~lv~v~d~~~----~~~~~~a~~~~~~~-~~~~~---~~~~~ll~~~~~D~V~i~tp~~--~h~~~~~~al~aGk~V 98 (362)
T 1ydw_A 29 PNATISGVASRSL----EKAKAFATANNYPE-STKIH---GSYESLLEDPEIDALYVPLPTS--LHVEWAIKAAEKGKHI 98 (362)
T ss_dssp TTEEEEEEECSSH----HHHHHHHHHTTCCT-TCEEE---SSHHHHHHCTTCCEEEECCCGG--GHHHHHHHHHTTTCEE
T ss_pred CCcEEEEEEcCCH----HHHHHHHHHhCCCC-CCeee---CCHHHHhcCCCCCEEEEcCChH--HHHHHHHHHHHCCCeE
Confidence 5566333443333 56778888888742 22222 35667776 489999876442 3345677899999999
Q ss_pred Eec
Q 001292 530 ITP 532 (1106)
Q Consensus 530 IAS 532 (1106)
++-
T Consensus 99 ~~E 101 (362)
T 1ydw_A 99 LLE 101 (362)
T ss_dssp EEC
T ss_pred EEe
Confidence 873
No 186
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=27.13 E-value=2.2e+02 Score=26.23 Aligned_cols=97 Identities=15% Similarity=0.184 Sum_probs=58.7
Q ss_pred CeEEEEEEcCCCC--ccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHH--hCCC
Q 001292 453 SFKFVFLCGNSTD--GYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMT--FGIP 528 (1106)
Q Consensus 453 dikfLIIVG~Gpe--rY~eeLkeLaeklGL~d~rV~flG~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA--~G~P 528 (1106)
..+.|+++|.|-. --...+++.+++.|++- .|...+ ..++...+..+|+++.+.... +-..=++..+ .++|
T Consensus 4 ~mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~-~i~~~~-~~~~~~~~~~~D~Ii~t~~l~---~~~~~~~~~~~~~~~p 78 (109)
T 2l2q_A 4 SMNILLVCGAGMSTSMLVQRIEKYAKSKNINA-TIEAIA-ETRLSEVVDRFDVVLLAPQSR---FNKKRLEEITKPKGIP 78 (109)
T ss_dssp CEEEEEESSSSCSSCHHHHHHHHHHHHHTCSE-EEEEEC-STTHHHHTTTCSEEEECSCCS---SHHHHHHHHHHHHTCC
T ss_pred ceEEEEECCChHhHHHHHHHHHHHHHHCCCCe-EEEEec-HHHHHhhcCCCCEEEECCccH---HHHHHHHHHhcccCCC
Confidence 3566788887643 23567788888888863 454444 346666678999999876542 2233344443 6899
Q ss_pred EEecCCCCchhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 529 VITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 529 VIASD~gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
|+.-+.-... . -|.+++.+.+.+++.
T Consensus 79 v~~I~~~~y~--~-----------~d~~~vl~~i~~~l~ 104 (109)
T 2l2q_A 79 IEIINTIDYG--T-----------MNGEKVLQLAINAFN 104 (109)
T ss_dssp EEECCHHHHH--H-----------TCHHHHHHHHHHHHH
T ss_pred EEEEChHHhc--c-----------CCHHHHHHHHHHHHh
Confidence 9875432111 1 256666666666654
No 187
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=26.64 E-value=3.1e+02 Score=30.85 Aligned_cols=106 Identities=11% Similarity=-0.019 Sum_probs=69.3
Q ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHh-----CCCE
Q 001292 457 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF-----GIPV 529 (1106)
Q Consensus 457 LIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~-----G~PV 529 (1106)
++||-+.+.. ...++.+.+..|. .|.....-.+...++.. .|++++--..- ..-|.-+++.+.- .+||
T Consensus 4 iLivdD~~~~-~~~l~~~L~~~~~---~v~~a~~~~~al~~~~~~~~dlvllD~~mp-~~~G~~~~~~l~~~~~~~~~pi 78 (459)
T 1w25_A 4 ILVVDDIEAN-VRLLEAKLTAEYY---EVSTAMDGPTALAMAARDLPDIILLDVMMP-GMDGFTVCRKLKDDPTTRHIPV 78 (459)
T ss_dssp EEEECSSTTH-HHHHHHHHHHTTC---EEEEESSHHHHHHHHHHHCCSEEEEESCCS-SSCHHHHHHHHHHSTTTTTSCE
T ss_pred EEEEeCCHHH-HHHHHHHHHHcCC---EEEEECCHHHHHHHHhcCCCCEEEEcCCCC-CCCHHHHHHHHhcCcccCCCCE
Confidence 4667776653 5667777766554 36555555555555543 68888643332 1347778887753 5788
Q ss_pred Eec-CCCC---chhhhccCCeEEEEcCCCHHHHHHHHHHHHh
Q 001292 530 ITP-DFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 567 (1106)
Q Consensus 530 IAS-D~gG---I~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLs 567 (1106)
|+- .... ..+.+..|..+++..|-++++|..+|..++.
T Consensus 79 i~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~ 120 (459)
T 1w25_A 79 VLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTR 120 (459)
T ss_dssp EEEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 763 3332 3355666889999999999999999988765
No 188
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=26.56 E-value=2.8e+02 Score=28.81 Aligned_cols=64 Identities=13% Similarity=0.037 Sum_probs=38.5
Q ss_pred CCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHHHHHhHHHHHhhccCccEEEEcc
Q 001292 222 PPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLWEQIAGQISILGQEQYSLIDWSI 291 (1106)
Q Consensus 222 ~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r~lg~lvkiIr~~~pDiIh~~~ 291 (1106)
+.+|+++++++.-.--..++..+.+++++.||++.++... ......+. +..+...++|-|-+..
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~--~~~~~~~~----i~~l~~~~vdgiii~~ 65 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP--DGEKTLNA----IDSLAASGAKGFVICT 65 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEECC--SHHHHHHH----HHHHHHTTCCEEEEEC
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCC--CHHHHHHH----HHHHHHcCCCEEEEeC
Confidence 4578999988755444555666777788889999877652 22222222 2233334678555543
No 189
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=26.37 E-value=1.1e+02 Score=31.46 Aligned_cols=41 Identities=20% Similarity=0.372 Sum_probs=34.6
Q ss_pred CCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCC
Q 001292 222 PPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRS 262 (1106)
Q Consensus 222 ~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~d 262 (1106)
-++|++|+|+...+..+..+...+..+.+.|.+|.++...+
T Consensus 2 ~k~I~vi~GS~R~~S~~~~la~~~~~~~~~~~~~~~idl~d 42 (190)
T 3u7r_A 2 VKTVAVMVGSLRKDSLNHKLMKVLQKLAEGRLEFHLLHIGD 42 (190)
T ss_dssp CEEEEEEESCCSTTCHHHHHHHHHHHHHTTTEEEEECCGGG
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHhccCCCEEEEEeccc
Confidence 46899999999999888888888888888899999987654
No 190
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=25.83 E-value=2.8e+02 Score=30.23 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=38.8
Q ss_pred HHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH--cCeEEEccCCCCCCCcHHHHHHHHhCCCEEec
Q 001292 469 DALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP 532 (1106)
Q Consensus 469 eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa--ADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS 532 (1106)
+..+++++++|++. + ..++.++++. .|++++.+-.. .-.-.+++|+..|++|++=
T Consensus 49 ~~a~~~a~~~g~~~--~-----~~d~~~ll~~~~iDaV~I~tP~~--~H~~~~~~al~aGkhVl~E 105 (390)
T 4h3v_A 49 EAVRAAAGKLGWST--T-----ETDWRTLLERDDVQLVDVCTPGD--SHAEIAIAALEAGKHVLCE 105 (390)
T ss_dssp HHHHHHHHHHTCSE--E-----ESCHHHHTTCTTCSEEEECSCGG--GHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHcCCCc--c-----cCCHHHHhcCCCCCEEEEeCChH--HHHHHHHHHHHcCCCceee
Confidence 67888899888762 2 2466777754 68888765432 3345788999999999873
No 191
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=25.70 E-value=2.3e+02 Score=29.39 Aligned_cols=87 Identities=14% Similarity=0.129 Sum_probs=51.1
Q ss_pred CCCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHHHHHhHHHHHhhccCccEEEEccccHHHHHHH
Q 001292 221 RPPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLWEQIAGQISILGQEQYSLIDWSIFDGIIADSL 300 (1106)
Q Consensus 221 r~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r~lg~lvkiIr~~~pDiIh~~~~~~i~v~~L 300 (1106)
+..+|+++++++.-.--..++..+.+++.+.||++.++...... ....+ .+..+...++|-+-+..... ....
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~-~~~~~----~~~~l~~~~vdgiIi~~~~~--~~~~ 79 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAEDI-VRERE----AVGQFFERRVDGLILAPSEG--EHDY 79 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCH-HHHHH----HHHHHHHTTCSEEEECCCSS--CCHH
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCCCH-HHHHH----HHHHHHHCCCCEEEEeCCCC--ChHH
Confidence 45689999988765444556667778888899999988764422 22111 23344455788665543322 1111
Q ss_pred HHHHhhhhcccCCCCCCcEEEE
Q 001292 301 EAKEAISSLMQEPFHSIPLVWI 322 (1106)
Q Consensus 301 a~k~~idII~te~~~gIPVI~t 322 (1106)
..+. ...++|+|..
T Consensus 80 ~~~~--------~~~~iPvV~~ 93 (291)
T 3egc_A 80 LRTE--------LPKTFPIVAV 93 (291)
T ss_dssp HHHS--------SCTTSCEEEE
T ss_pred HHHh--------hccCCCEEEE
Confidence 1111 1368999977
No 192
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=25.69 E-value=1.3e+02 Score=34.24 Aligned_cols=57 Identities=18% Similarity=0.154 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH-------cCeEEEccCCCCCCCcHHHHHHHHhCCCEEec
Q 001292 469 DALQEVASRLGLLEHSVRHYGFNGDVNGVLLM-------ADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP 532 (1106)
Q Consensus 469 eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa-------ADVfV~PS~~EeEGFGlvLLEAMA~G~PVIAS 532 (1106)
+..+++++++|++. +. ...++.+++.. .|++++.+... .-.-.+++|+..|++|++=
T Consensus 77 ~~a~~~a~~~g~~~--~~---~~~~~~~ll~~~~~~~~~vD~V~I~tp~~--~H~~~~~~al~aGkhVl~E 140 (417)
T 3v5n_A 77 EKAEASGRELGLDP--SR---VYSDFKEMAIREAKLKNGIEAVAIVTPNH--VHYAAAKEFLKRGIHVICD 140 (417)
T ss_dssp HHHHHHHHHHTCCG--GG---BCSCHHHHHHHHHHCTTCCSEEEECSCTT--SHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHcCCCc--cc---ccCCHHHHHhcccccCCCCcEEEECCCcH--HHHHHHHHHHhCCCeEEEE
Confidence 66788888888862 11 12467777776 89999876543 3345678899999999873
No 193
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=25.63 E-value=3.1e+02 Score=28.24 Aligned_cols=65 Identities=12% Similarity=0.234 Sum_probs=37.5
Q ss_pred CCCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHHHHHhHHHHHhhccCccEEEEc
Q 001292 221 RPPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLWEQIAGQISILGQEQYSLIDWS 290 (1106)
Q Consensus 221 r~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r~lg~lvkiIr~~~pDiIh~~ 290 (1106)
++.+|+++++++.-.--...+..+.+++.+.||++.++.... ......+. +..+...++|-+-+.
T Consensus 1 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~----~~~l~~~~vdgiI~~ 65 (290)
T 2fn9_A 1 MKGKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDSQN-DTAKESAH----FDAIIAAGYDAIIFN 65 (290)
T ss_dssp --CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHH----HHHHHHTTCSEEEEC
T ss_pred CceEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCCCC-CHHHHHHH----HHHHHHcCCCEEEEe
Confidence 356899999886543344455666777888999998875532 22221122 223334567855553
No 194
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=25.47 E-value=6.5e+02 Score=26.95 Aligned_cols=106 Identities=19% Similarity=0.180 Sum_probs=48.4
Q ss_pred ccccceeeeecccCCCCCccccccCCCCCCCCCCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHH
Q 001292 190 LRFGSRLKFVPDQVGFGNGLDGLRSTPRFGVRPPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLW 269 (1106)
Q Consensus 190 l~~ger~gf~~~~~~~~~~~~ha~Sv~r~g~r~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~ 269 (1106)
+..-+++||.|... ++++. ..+...|+++++++.-.--..++..+.+.+.+.||.+.++..... .....
T Consensus 48 ~~~a~~lgY~pn~~--------a~~l~--~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~~~ 116 (355)
T 3e3m_A 48 LKVVKDMNYVPDQV--------AGSLT--TKRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYTAYS-PEREE 116 (355)
T ss_dssp ---------------------------------CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEECTTC-HHHHH
T ss_pred HHHHHHhCCCcCHH--------HHhhh--cCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCC-hHHHH
Confidence 34567778877542 22221 123457999999876544455666777888899999988765432 22211
Q ss_pred HHHhHHHHHhhccCccEEEEcc--ccHHHHHHHHHHHhhhhcccCCCCCCcEEEE
Q 001292 270 EQIAGQISILGQEQYSLIDWSI--FDGIIADSLEAKEAISSLMQEPFHSIPLVWI 322 (1106)
Q Consensus 270 r~lg~lvkiIr~~~pDiIh~~~--~~~i~v~~La~k~~idII~te~~~gIPVI~t 322 (1106)
+ .+..+...++|-+-+.. .....+..+.. .++|+|..
T Consensus 117 ~----~~~~l~~~~vdGiI~~~~~~~~~~~~~l~~------------~~iPvV~i 155 (355)
T 3e3m_A 117 Q----LVETMLRRRPEAMVLSYDGHTEQTIRLLQR------------ASIPIVEI 155 (355)
T ss_dssp H----HHHHHHHTCCSEEEEECSCCCHHHHHHHHH------------CCSCEEEE
T ss_pred H----HHHHHHhCCCCEEEEeCCCCCHHHHHHHHh------------CCCCEEEE
Confidence 2 23334445677444422 22222222222 68899876
No 195
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=24.49 E-value=3.1e+02 Score=27.32 Aligned_cols=42 Identities=17% Similarity=0.077 Sum_probs=32.6
Q ss_pred CEEEEEeCCCCCChhHHHHHH-HHHH-HHHCCCEEEEEEcCCCC
Q 001292 223 PRIGLILGNMAKDSRSLLLIT-VVKN-LQKLGYVFKIYAVRSGN 264 (1106)
Q Consensus 223 ~RIalVlg~L~~gGesl~vv~-Laka-Lqe~GyeVtV~t~~dg~ 264 (1106)
++|++|.++...+|.+..+.. +++. |.+.|++|.++...+-+
T Consensus 3 mkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~ 46 (197)
T 2vzf_A 3 YSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLD 46 (197)
T ss_dssp EEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSC
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEccccC
Confidence 489999999987776655554 6677 88899999999876543
No 196
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=24.27 E-value=96 Score=29.15 Aligned_cols=77 Identities=16% Similarity=0.167 Sum_probs=50.7
Q ss_pred CeEEEEEEcCCCCc--cHHHHHHHHHHcCCCCCcEEEcC-ChhhHHHHHHHcCeEEEccCCCCCCCcHHHHHHHHh--CC
Q 001292 453 SFKFVFLCGNSTDG--YNDALQEVASRLGLLEHSVRHYG-FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTF--GI 527 (1106)
Q Consensus 453 dikfLIIVG~Gper--Y~eeLkeLaeklGL~d~rV~flG-~~eDL~~LyaaADVfV~PS~~EeEGFGlvLLEAMA~--G~ 527 (1106)
..+.|++++.|-.. ....+++.+++.|++ |.... ...++...+...|+++++... .+-..=++..+- |+
T Consensus 6 ~mkIlL~C~aGmSTsllv~km~~~a~~~gi~---v~i~a~~~~~~~~~~~~~DvvLLgPQV---~y~~~~ik~~~~~~~i 79 (108)
T 3nbm_A 6 ELKVLVLCAGSGTSAQLANAINEGANLTEVR---VIANSGAYGAHYDIMGVYDLIILAPQV---RSYYREMKVDAERLGI 79 (108)
T ss_dssp CEEEEEEESSSSHHHHHHHHHHHHHHHHTCS---EEEEEEETTSCTTTGGGCSEEEECGGG---GGGHHHHHHHHTTTTC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCc---eEEEEcchHHHHhhccCCCEEEEChHH---HHHHHHHHHHhhhcCC
Confidence 44667888887432 246678888888986 33322 333455666789999987643 445566666664 89
Q ss_pred CEEecCCC
Q 001292 528 PVITPDFP 535 (1106)
Q Consensus 528 PVIASD~g 535 (1106)
||.+-+..
T Consensus 80 pV~vI~~~ 87 (108)
T 3nbm_A 80 QIVATRGM 87 (108)
T ss_dssp EEEECCHH
T ss_pred cEEEeCHH
Confidence 99887543
No 197
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=24.13 E-value=4.6e+02 Score=26.94 Aligned_cols=82 Identities=17% Similarity=0.211 Sum_probs=48.3
Q ss_pred CCCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCE-EEEEEcCCCCchHHHHHHhHHHHHhhccCccEEEEccccHHHHHH
Q 001292 221 RPPRIGLILGNMAKDSRSLLLITVVKNLQKLGYV-FKIYAVRSGNSHSLWEQIAGQISILGQEQYSLIDWSIFDGIIADS 299 (1106)
Q Consensus 221 r~~RIalVlg~L~~gGesl~vv~LakaLqe~Gye-VtV~t~~dg~~~~i~r~lg~lvkiIr~~~pDiIh~~~~~~i~v~~ 299 (1106)
+..+|+++++++.-.--..++..+.+++.+.||. +.++.... ......+ .+..+...++|-+-+..
T Consensus 9 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~~~~~----~~~~l~~~~vdgiIi~~-------- 75 (277)
T 3hs3_A 9 KSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTNS-DVKKYQN----AIINFENNNVDGIITSA-------- 75 (277)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSSC-CHHHHHH----HHHHHHHTTCSEEEEEC--------
T ss_pred CCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeCCC-ChHHHHH----HHHHHHhCCCCEEEEcc--------
Confidence 4568999999876544455666777888889999 66654333 2222222 23344455777554433
Q ss_pred HHHHHhhhhcccCCCCCCcEEEE
Q 001292 300 LEAKEAISSLMQEPFHSIPLVWI 322 (1106)
Q Consensus 300 La~k~~idII~te~~~gIPVI~t 322 (1106)
..+......++|+|..
T Consensus 76 -------~~~~~~~~~~iPvV~~ 91 (277)
T 3hs3_A 76 -------FTIPPNFHLNTPLVMY 91 (277)
T ss_dssp -------CCCCTTCCCSSCEEEE
T ss_pred -------hHHHHHHhCCCCEEEE
Confidence 0111122468999877
No 198
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=24.12 E-value=1.2e+02 Score=33.09 Aligned_cols=68 Identities=15% Similarity=0.184 Sum_probs=40.8
Q ss_pred CCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHHhCCCE
Q 001292 452 GSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMTFGIPV 529 (1106)
Q Consensus 452 PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA~G~PV 529 (1106)
+++.+.-++...+++ .+++++++|... ...++.+++. ..|++++.+... .-.-.+.+|+..|++|
T Consensus 28 ~~~~~~av~d~~~~~----~~~~a~~~~~~~-------~~~~~~~ll~~~~~D~V~i~tp~~--~h~~~~~~al~aGk~V 94 (329)
T 3evn_A 28 GNGEVVAVSSRTLES----AQAFANKYHLPK-------AYDKLEDMLADESIDVIYVATINQ--DHYKVAKAALLAGKHV 94 (329)
T ss_dssp CSEEEEEEECSCSST----TCC---CCCCSC-------EESCHHHHHTCTTCCEEEECSCGG--GHHHHHHHHHHTTCEE
T ss_pred CCcEEEEEEcCCHHH----HHHHHHHcCCCc-------ccCCHHHHhcCCCCCEEEECCCcH--HHHHHHHHHHHCCCeE
Confidence 556644455555543 445556555431 1257778887 789998865432 2344577899999999
Q ss_pred Eec
Q 001292 530 ITP 532 (1106)
Q Consensus 530 IAS 532 (1106)
++-
T Consensus 95 l~E 97 (329)
T 3evn_A 95 LVE 97 (329)
T ss_dssp EEE
T ss_pred EEc
Confidence 874
No 199
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=23.95 E-value=1.3e+02 Score=33.81 Aligned_cols=56 Identities=16% Similarity=0.114 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCCCCcEEEcCChhhHHHHHHH-------cCeEEEccCCCCCCCcHHHHHHHHhCCCEEe
Q 001292 469 DALQEVASRLGLLEHSVRHYGFNGDVNGVLLM-------ADIVLYGSSQVEQGFPSLIVRAMTFGIPVIT 531 (1106)
Q Consensus 469 eeLkeLaeklGL~d~rV~flG~~eDL~~Lyaa-------ADVfV~PS~~EeEGFGlvLLEAMA~G~PVIA 531 (1106)
+..+++++++|++. +. ...++.+++.. .|++++.+... .-.-.+++|+..|++|++
T Consensus 52 ~~a~~~a~~~g~~~--~~---~~~~~~~ll~~~~~~~~~vD~V~i~tp~~--~H~~~~~~al~aGkhVl~ 114 (398)
T 3dty_A 52 IRGSAFGEQLGVDS--ER---CYADYLSMFEQEARRADGIQAVSIATPNG--THYSITKAALEAGLHVVC 114 (398)
T ss_dssp HHHHHHHHHTTCCG--GG---BCSSHHHHHHHHTTCTTCCSEEEEESCGG--GHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHhCCCc--ce---eeCCHHHHHhcccccCCCCCEEEECCCcH--HHHHHHHHHHHCCCeEEE
Confidence 67788888888862 11 12467777776 89988765432 234567899999999987
No 200
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=23.49 E-value=26 Score=35.87 Aligned_cols=79 Identities=13% Similarity=0.107 Sum_probs=47.9
Q ss_pred EEEcCCh-hhHHHHHHHcCeEEE-ccCCCCCCCc--HHHHHHHHhCCCEEecCCCCc-hhhhccCCeEEEEcCCCHHHHH
Q 001292 485 VRHYGFN-GDVNGVLLMADIVLY-GSSQVEQGFP--SLIVRAMTFGIPVITPDFPII-KEYVAEGAQVIFFQKDNPEGLS 559 (1106)
Q Consensus 485 V~flG~~-eDL~~LyaaADVfV~-PS~~EeEGFG--lvLLEAMA~G~PVIASD~gGI-~EiV~Dg~nG~LV~~~D~eeLA 559 (1106)
....+.. .--..+...||.+|. |+ ++| ..+.||+..++||++-+.-+. ..++.......+...+|++++.
T Consensus 91 ~i~~~~~~~Rk~~m~~~sda~IvlpG-----g~GTL~E~~~al~~~kpV~~l~~~~~~~gfi~~~~~~~i~~~~~~~e~~ 165 (176)
T 2iz6_A 91 PIVTGLGSARDNINALSSNVLVAVGM-----GPGTAAEVALALKAKKPVVLLGTQPEAEKFFTSLDAGLVHVAADVAGAI 165 (176)
T ss_dssp EEECCCCSSSCCCCGGGCSEEEEESC-----CHHHHHHHHHHHHTTCCEEEESCCHHHHHHHHHHCTTTEEEESSHHHHH
T ss_pred eEEcCCHHHHHHHHHHhCCEEEEecC-----CccHHHHHHHHHHhCCcEEEEcCcccccccCChhhcCeEEEcCCHHHHH
Confidence 4444432 333445566888774 43 333 356778889999999876332 1233332223344557999999
Q ss_pred HHHHHHHhC
Q 001292 560 RAFSLFISN 568 (1106)
Q Consensus 560 eAI~~LLsD 568 (1106)
+.|.+.+.+
T Consensus 166 ~~l~~~~~~ 174 (176)
T 2iz6_A 166 AAVKQLLAK 174 (176)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 999887754
No 201
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=22.91 E-value=6.4e+02 Score=25.98 Aligned_cols=85 Identities=12% Similarity=0.078 Sum_probs=48.3
Q ss_pred CCCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHHHHHhHHHHHhhccCccEEEEccc--cHHHHH
Q 001292 221 RPPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLWEQIAGQISILGQEQYSLIDWSIF--DGIIAD 298 (1106)
Q Consensus 221 r~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~r~lg~lvkiIr~~~pDiIh~~~~--~~i~v~ 298 (1106)
+...|+++++++.-.--..++..+.+++++.||++.++.... ......+ .+..+...++|-+-+... ....+.
T Consensus 15 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~----~~~~l~~~~vdgiIi~~~~~~~~~~~ 89 (289)
T 2fep_A 15 KTTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNSDQ-NMEKELH----LLNTMLGKQVDGIVFMGGNITDEHVA 89 (289)
T ss_dssp -CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHH----HHHHHHHTTCSEEEECCSCCCHHHHH
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCC-CHHHHHH----HHHHHHhCCCCEEEEecCCCCHHHHH
Confidence 456899999886543344556667778888999998875432 2222212 233334457775554332 222232
Q ss_pred HHHHHHhhhhcccCCCCCCcEEEE
Q 001292 299 SLEAKEAISSLMQEPFHSIPLVWI 322 (1106)
Q Consensus 299 ~La~k~~idII~te~~~gIPVI~t 322 (1106)
.+.. .++|+|..
T Consensus 90 ~l~~------------~~iPvV~~ 101 (289)
T 2fep_A 90 EFKR------------SPVPIVLA 101 (289)
T ss_dssp HHHH------------SSSCEEEE
T ss_pred HHHh------------cCCCEEEE
Confidence 2222 67898876
No 202
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=22.85 E-value=1.2e+02 Score=33.24 Aligned_cols=67 Identities=12% Similarity=0.174 Sum_probs=43.7
Q ss_pred CCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHH--HHcCeEEEccCCCCCCCcHHHHHHHHhCCCE
Q 001292 452 GSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVL--LMADIVLYGSSQVEQGFPSLIVRAMTFGIPV 529 (1106)
Q Consensus 452 PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Ly--aaADVfV~PS~~EeEGFGlvLLEAMA~G~PV 529 (1106)
|++.+.-++...+ +..+++++++|+.. ..++.+++ ...|++++.+... .-.-.+.+|+..|++|
T Consensus 28 ~~~~lvav~d~~~----~~~~~~~~~~g~~~--------~~~~~~~l~~~~~D~V~i~tp~~--~h~~~~~~al~~gk~v 93 (354)
T 3db2_A 28 EKLKLVTCYSRTE----DKREKFGKRYNCAG--------DATMEALLAREDVEMVIITVPND--KHAEVIEQCARSGKHI 93 (354)
T ss_dssp SSEEEEEEECSSH----HHHHHHHHHHTCCC--------CSSHHHHHHCSSCCEEEECSCTT--SHHHHHHHHHHTTCEE
T ss_pred CCcEEEEEECCCH----HHHHHHHHHcCCCC--------cCCHHHHhcCCCCCEEEEeCChH--HHHHHHHHHHHcCCEE
Confidence 5666323443333 66777888777652 35777888 4589988766442 3345677899999999
Q ss_pred Eec
Q 001292 530 ITP 532 (1106)
Q Consensus 530 IAS 532 (1106)
++-
T Consensus 94 l~E 96 (354)
T 3db2_A 94 YVE 96 (354)
T ss_dssp EEE
T ss_pred EEc
Confidence 874
No 203
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=22.59 E-value=2.5e+02 Score=28.12 Aligned_cols=111 Identities=9% Similarity=-0.031 Sum_probs=67.2
Q ss_pred eEEEEEEcCCCCccHHHHHHHHHH-cCCCCCcEEE-cC-ChhhHHHHH--HHcCeEEEccCCCCCCCcHHHHHHHHh---
Q 001292 454 FKFVFLCGNSTDGYNDALQEVASR-LGLLEHSVRH-YG-FNGDVNGVL--LMADIVLYGSSQVEQGFPSLIVRAMTF--- 525 (1106)
Q Consensus 454 ikfLIIVG~GperY~eeLkeLaek-lGL~d~rV~f-lG-~~eDL~~Ly--aaADVfV~PS~~EeEGFGlvLLEAMA~--- 525 (1106)
.+ ++|+.+.+.. ...++.+.+. .|+. |.. .. ..+.+..++ ...|++++--... +.-|..+++.+..
T Consensus 8 ~~-IlivdD~~~~-~~~l~~~L~~~~~~~---v~~~~~~~~~~~~~~~~~~~~dlvllD~~mp-~~~G~~~~~~lr~~~~ 81 (225)
T 3klo_A 8 LN-VRMLSDVCMQ-SRLLKEALESKLPLA---LEITPFSELWLEENKPESRSIQMLVIDYSRI-SDDVLTDYSSFKHISC 81 (225)
T ss_dssp EE-EEEESCCSHH-HHHHHHHHHHHSSEE---EEEECGGGHHHHTTCSGGGGCCEEEEEGGGC-CHHHHHHHHHHHHHHC
T ss_pred eE-EEEEcCcHHH-HHHHHHHHhhCCCce---EEEEeCCcHHHHHHHhhccCCCEEEEeCCCC-CCCHHHHHHHHHHhhC
Confidence 45 5677777653 5667776663 2332 322 12 112222222 2468988754432 1336667766543
Q ss_pred -CCCEEec-CC---CCchhhhccCCeEEEEcCCCHHHHHHHHHHHHhCcc
Q 001292 526 -GIPVITP-DF---PIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGK 570 (1106)
Q Consensus 526 -G~PVIAS-D~---gGI~EiV~Dg~nG~LV~~~D~eeLAeAI~~LLsDpe 570 (1106)
.+|||.- .. ......+..|..|++..|.++++|..+|..++....
T Consensus 82 ~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 131 (225)
T 3klo_A 82 PDAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEM 131 (225)
T ss_dssp TTCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTCC
T ss_pred CCCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCCE
Confidence 6887763 22 233455566889999999999999999999987654
No 204
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=22.48 E-value=1.8e+02 Score=31.57 Aligned_cols=68 Identities=18% Similarity=0.270 Sum_probs=42.3
Q ss_pred CCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHHhCCCE
Q 001292 452 GSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMTFGIPV 529 (1106)
Q Consensus 452 PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA~G~PV 529 (1106)
++++++.++...+ +..+++++++|.. .+ + .++.+++. .+|+++..+... .-.-.+++|+..|++|
T Consensus 32 ~~~~~vav~d~~~----~~~~~~a~~~g~~--~~-~----~~~~~~l~~~~~D~V~i~tp~~--~h~~~~~~al~~G~~v 98 (346)
T 3cea_A 32 QGVKLVAACALDS----NQLEWAKNELGVE--TT-Y----TNYKDMIDTENIDAIFIVAPTP--FHPEMTIYAMNAGLNV 98 (346)
T ss_dssp SSEEEEEEECSCH----HHHHHHHHTTCCS--EE-E----SCHHHHHTTSCCSEEEECSCGG--GHHHHHHHHHHTTCEE
T ss_pred CCcEEEEEecCCH----HHHHHHHHHhCCC--cc-c----CCHHHHhcCCCCCEEEEeCChH--hHHHHHHHHHHCCCEE
Confidence 5566333444333 5567777766653 11 1 35677776 589999876432 2334567899999999
Q ss_pred Eec
Q 001292 530 ITP 532 (1106)
Q Consensus 530 IAS 532 (1106)
++-
T Consensus 99 ~~e 101 (346)
T 3cea_A 99 FCE 101 (346)
T ss_dssp EEC
T ss_pred EEc
Confidence 973
No 205
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=21.25 E-value=2.3e+02 Score=30.95 Aligned_cols=67 Identities=21% Similarity=0.303 Sum_probs=42.0
Q ss_pred CCeEEEEEEcCCCCccHHHHHHHHHHcCCCCCcEEEcCChhhHHHHHH--HcCeEEEccCCCCCCCcHHHHHHHHhCCCE
Q 001292 452 GSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMTFGIPV 529 (1106)
Q Consensus 452 PdikfLIIVG~GperY~eeLkeLaeklGL~d~rV~flG~~eDL~~Lya--aADVfV~PS~~EeEGFGlvLLEAMA~G~PV 529 (1106)
+++.++-++...+ +..+++++++|+. . ..++.+++. .+|++++.+... .-.-.+.+|+..|++|
T Consensus 37 ~~~~lvav~d~~~----~~~~~~~~~~~~~-----~---~~~~~~ll~~~~~D~V~i~tp~~--~h~~~~~~al~~gk~v 102 (354)
T 3q2i_A 37 DRAELIDVCDIDP----AALKAAVERTGAR-----G---HASLTDMLAQTDADIVILTTPSG--LHPTQSIECSEAGFHV 102 (354)
T ss_dssp TTEEEEEEECSSH----HHHHHHHHHHCCE-----E---ESCHHHHHHHCCCSEEEECSCGG--GHHHHHHHHHHTTCEE
T ss_pred CCeEEEEEEcCCH----HHHHHHHHHcCCc-----e---eCCHHHHhcCCCCCEEEECCCcH--HHHHHHHHHHHCCCCE
Confidence 4565322443333 6677778777642 1 246677776 689988865432 2234577899999999
Q ss_pred Eec
Q 001292 530 ITP 532 (1106)
Q Consensus 530 IAS 532 (1106)
++-
T Consensus 103 ~~E 105 (354)
T 3q2i_A 103 MTE 105 (354)
T ss_dssp EEC
T ss_pred EEe
Confidence 863
No 206
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=21.04 E-value=3.5e+02 Score=27.67 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=28.5
Q ss_pred CCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcC
Q 001292 222 PPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVR 261 (1106)
Q Consensus 222 ~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~ 261 (1106)
++.|+++++++.-.--...+..+.+.+++.||++.++...
T Consensus 1 ~~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~~ 40 (271)
T 2dri_A 1 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQ 40 (271)
T ss_dssp CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECT
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEeCCC
Confidence 4678999888654434445566677788889999887543
No 207
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=21.01 E-value=1.5e+02 Score=29.96 Aligned_cols=67 Identities=16% Similarity=0.099 Sum_probs=42.1
Q ss_pred HHHHHcCeEEEcc-CCCCCCCcHHHHH---HHHhCCCEEec--CC---CCc-h-------hhhcc-------------CC
Q 001292 496 GVLLMADIVLYGS-SQVEQGFPSLIVR---AMTFGIPVITP--DF---PII-K-------EYVAE-------------GA 545 (1106)
Q Consensus 496 ~LyaaADVfV~PS-~~EeEGFGlvLLE---AMA~G~PVIAS--D~---gGI-~-------EiV~D-------------g~ 545 (1106)
..+..||++|.-- -. +.=+.+..| |.|.|+|||+- |. ++. . |+.++ ..
T Consensus 65 ~~i~~aD~viA~ldg~--~~D~Gt~~EiG~A~a~gkPVi~~~~D~R~~g~~~~~~~~~~~~~~e~~f~~~N~~~~G~i~~ 142 (162)
T 3ehd_A 65 ENVLASDLLVALLDGP--TIDAGVASEIGVAYAKGIPVVALYTDSRQQGADNHQKLDALNEIAENQFHYLNLYTVGLIKL 142 (162)
T ss_dssp HHHHTCSEEEEECCSS--SCCHHHHHHHHHHHHTTCCEEEECCCGGGCCTTCHHHHHHTTSTTCCCSCCCCHHHHHHHHT
T ss_pred HHHHHCCEEEEECCCC--CCCCCHHHHHHHHHHCCCEEEEEEcCcccccCCcchhhhhhHHHhhhhhhhhhHHHhhhHHh
Confidence 5688999988521 11 133567777 79999999985 32 221 1 11111 12
Q ss_pred eEEEEcCCCHHHHHHHHHHHH
Q 001292 546 QVIFFQKDNPEGLSRAFSLFI 566 (1106)
Q Consensus 546 nG~LV~~~D~eeLAeAI~~LL 566 (1106)
+|.++ .+.++|.++|...+
T Consensus 143 ~g~~~--~~~~~~~~~l~~~~ 161 (162)
T 3ehd_A 143 NGRVV--SSEEDLLEEIKQRL 161 (162)
T ss_dssp TEEEE--SSHHHHHHHHHHTC
T ss_pred CCeEE--eCHHHHHHHHHHHh
Confidence 78888 47889999888765
No 208
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=20.67 E-value=2.9e+02 Score=28.81 Aligned_cols=66 Identities=15% Similarity=-0.031 Sum_probs=39.9
Q ss_pred CCCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCC-CCchHHHHHHhHHHHHhhccCccEEEEc
Q 001292 221 RPPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRS-GNSHSLWEQIAGQISILGQEQYSLIDWS 290 (1106)
Q Consensus 221 r~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~d-g~~~~i~r~lg~lvkiIr~~~pDiIh~~ 290 (1106)
.+.+|++++++..-.--..++..+.+++++.||++.++.... +......+. +..+...++|-|-+.
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~----i~~l~~~~vdgiii~ 68 (297)
T 3rot_A 2 VRDKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQF----IESALATYPSGIATT 68 (297)
T ss_dssp -CCEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHH----HHHHHHTCCSEEEEC
T ss_pred ceEEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHH----HHHHHHcCCCEEEEe
Confidence 356899999987544445556667778888899999876442 122222222 333334567855553
No 209
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=20.46 E-value=5e+02 Score=27.60 Aligned_cols=106 Identities=13% Similarity=0.161 Sum_probs=49.6
Q ss_pred ccccceeeeecccCCCCCccccccCCCCCCCCCCEEEEEeCCCCCChhHHHHHHHHHHHHHCCCEEEEEEcCCCCchHHH
Q 001292 190 LRFGSRLKFVPDQVGFGNGLDGLRSTPRFGVRPPRIGLILGNMAKDSRSLLLITVVKNLQKLGYVFKIYAVRSGNSHSLW 269 (1106)
Q Consensus 190 l~~ger~gf~~~~~~~~~~~~ha~Sv~r~g~r~~RIalVlg~L~~gGesl~vv~LakaLqe~GyeVtV~t~~dg~~~~i~ 269 (1106)
+...+++||.|... ++++. ..+...|+++++++.-.--..++..+.+++.+.||.+.++..... .....
T Consensus 40 ~~~~~~lgY~pn~~--------a~~l~--~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~~~ 108 (339)
T 3h5o_A 40 MQAVDALAYVPSRS--------ASTLA--SAKSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNSHYD-AGQEL 108 (339)
T ss_dssp ---------------------------------CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEECTTC-HHHHH
T ss_pred HHHHHHhCCCcCHH--------HHhhh--cCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCC-hHHHH
Confidence 44567778877542 22221 223468999999876555556667788888999999988765432 22221
Q ss_pred HHHhHHHHHhhccCccEEEEcc--ccHHHHHHHHHHHhhhhcccCCCCCCcEEEE
Q 001292 270 EQIAGQISILGQEQYSLIDWSI--FDGIIADSLEAKEAISSLMQEPFHSIPLVWI 322 (1106)
Q Consensus 270 r~lg~lvkiIr~~~pDiIh~~~--~~~i~v~~La~k~~idII~te~~~gIPVI~t 322 (1106)
+ .+..+...++|-+-+.. .....+..+.. .++|+|..
T Consensus 109 ~----~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~------------~~iPvV~~ 147 (339)
T 3h5o_A 109 Q----LLRAYLQHRPDGVLITGLSHAEPFERILSQ------------HALPVVYM 147 (339)
T ss_dssp H----HHHHHHTTCCSEEEEECSCCCTTHHHHHHH------------TTCCEEEE
T ss_pred H----HHHHHHcCCCCEEEEeCCCCCHHHHHHHhc------------CCCCEEEE
Confidence 2 23344455777444422 22222332322 67898876
No 210
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=20.15 E-value=3.2e+02 Score=28.13 Aligned_cols=68 Identities=6% Similarity=-0.023 Sum_probs=41.6
Q ss_pred CCCEEEEEeCCC-CCChhHHHHHHHHHHHHHC-CCEEEEEEcCC--CCchHHHHHHhHHHHHhhccCccEEEEccc
Q 001292 221 RPPRIGLILGNM-AKDSRSLLLITVVKNLQKL-GYVFKIYAVRS--GNSHSLWEQIAGQISILGQEQYSLIDWSIF 292 (1106)
Q Consensus 221 r~~RIalVlg~L-~~gGesl~vv~LakaLqe~-GyeVtV~t~~d--g~~~~i~r~lg~lvkiIr~~~pDiIh~~~~ 292 (1106)
+..+|++++++. .-.--..++..+.+++.+. ||.+.+..... ........ .+..+...++|-|-+...
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~----~i~~l~~~~vdgiii~~~ 78 (304)
T 3gbv_A 7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVA----TSQAVIEEQPDGVMFAPT 78 (304)
T ss_dssp CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHH----HHHHHHTTCCSEEEECCS
T ss_pred CcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHH----HHHHHHhcCCCEEEECCC
Confidence 456799999987 4444455566677788888 99999876532 12222222 234445567886665443
No 211
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=20.08 E-value=4.7e+02 Score=26.71 Aligned_cols=114 Identities=11% Similarity=0.040 Sum_probs=64.1
Q ss_pred CCeEEEEEEcCCCC-ccHHHHHHHHHHcCCCCCcEEEcC---ChhhHHHHHHH-----cCeEEEccCCCCCCCcHHHHHH
Q 001292 452 GSFKFVFLCGNSTD-GYNDALQEVASRLGLLEHSVRHYG---FNGDVNGVLLM-----ADIVLYGSSQVEQGFPSLIVRA 522 (1106)
Q Consensus 452 PdikfLIIVG~Gpe-rY~eeLkeLaeklGL~d~rV~flG---~~eDL~~Lyaa-----ADVfV~PS~~EeEGFGlvLLEA 522 (1106)
|.+ .||.|...+ .+.++....++++|++- .|...+ ..+.+.+|... ++++|...-.+ -.+.-+=|
T Consensus 12 ~~V--~IimGS~SD~~v~~~a~~~L~~~Gi~~-dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~a---a~LpgvvA 85 (170)
T 1xmp_A 12 SLV--GVIMGSTSDWETMKYACDILDELNIPY-EKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGA---AHLPGMVA 85 (170)
T ss_dssp CSE--EEEESSGGGHHHHHHHHHHHHHTTCCE-EEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESS---CCHHHHHH
T ss_pred CcE--EEEECcHHHHHHHHHHHHHHHHcCCCE-EEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCch---hhhHHHHH
Confidence 555 355665433 34456667778899986 788888 34677777764 67888655443 12333335
Q ss_pred HHhCCCEEec-----CCCCchh---hhc--cCCeEEEEcCC-----CHHHHHHHHHHHHhCcccH
Q 001292 523 MTFGIPVITP-----DFPIIKE---YVA--EGAQVIFFQKD-----NPEGLSRAFSLFISNGKLS 572 (1106)
Q Consensus 523 MA~G~PVIAS-----D~gGI~E---iV~--Dg~nG~LV~~~-----D~eeLAeAI~~LLsDpelR 572 (1106)
-..-+|||.- ..+|+.. +++ .+..-..+..+ |..-+|..|. -+.|++++
T Consensus 86 ~~t~~PVIgVP~~~~~l~G~daLlSivqmP~GvpVatV~I~~a~~~nAallAaqIl-a~~d~~l~ 149 (170)
T 1xmp_A 86 AKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLAAQIL-GSFHDDIH 149 (170)
T ss_dssp TTCCSCEEEEEECCTTTTTHHHHHHHHCCCTTCCCEECCSSHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred hccCCCEEEeeCCCCCCCcHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHHHHH-ccCCHHHH
Confidence 5567899864 3344433 333 22211122223 4555666665 35677774
Done!