Query 001293
Match_columns 1106
No_of_seqs 652 out of 5533
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 20:41:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001293.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001293hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 5.5E-77 1.9E-81 787.2 53.7 217 852-1093 1073-1299(1321)
2 3g5u_A MCG1178, multidrug resi 100.0 1.5E-71 5E-76 733.8 54.6 216 853-1093 1028-1253(1284)
3 3bk7_A ABC transporter ATP-bin 100.0 6.3E-58 2.1E-62 558.4 35.8 201 855-1094 357-559 (607)
4 1yqt_A RNAse L inhibitor; ATP- 100.0 5.3E-58 1.8E-62 554.0 33.2 201 855-1094 287-489 (538)
5 2iw3_A Elongation factor 3A; a 100.0 1.5E-56 5E-61 561.7 37.6 184 165-413 448-634 (986)
6 3ozx_A RNAse L inhibitor; ATP 100.0 1.7E-56 5.7E-61 539.2 31.9 192 855-1083 269-461 (538)
7 3ux8_A Excinuclease ABC, A sub 100.0 2E-55 6.7E-60 548.5 36.7 214 164-412 30-296 (670)
8 3j16_B RLI1P; ribosome recycli 100.0 5E-55 1.7E-59 531.6 30.6 188 882-1094 361-555 (608)
9 3tui_C Methionine import ATP-b 100.0 1.9E-42 6.5E-47 393.4 28.4 223 118-413 24-252 (366)
10 3tui_C Methionine import ATP-b 100.0 2.9E-42 1E-46 391.8 27.3 218 855-1093 24-248 (366)
11 3rlf_A Maltose/maltodextrin im 100.0 6.9E-42 2.4E-46 391.3 29.2 207 165-414 16-223 (381)
12 3fvq_A Fe(3+) IONS import ATP- 100.0 5.8E-42 2E-46 389.5 27.5 207 165-414 17-228 (359)
13 3tif_A Uncharacterized ABC tra 100.0 5.8E-42 2E-46 371.5 26.2 220 856-1094 2-230 (235)
14 3pih_A Uvrabc system protein A 100.0 2.9E-41 9.8E-46 423.9 34.3 197 883-1094 599-898 (916)
15 3gfo_A Cobalt import ATP-bindi 100.0 7.2E-42 2.5E-46 378.0 24.4 216 855-1094 7-229 (275)
16 3rlf_A Maltose/maltodextrin im 100.0 1.8E-41 6.2E-46 387.8 27.4 213 856-1093 4-218 (381)
17 2pcj_A ABC transporter, lipopr 100.0 2E-41 6.8E-46 364.8 26.1 211 856-1092 5-222 (224)
18 2olj_A Amino acid ABC transpor 100.0 2.5E-41 8.6E-46 371.5 27.2 215 855-1094 24-244 (263)
19 3tif_A Uncharacterized ABC tra 100.0 3E-41 1E-45 365.9 27.4 207 165-412 18-232 (235)
20 3nh6_A ATP-binding cassette SU 100.0 2.3E-42 7.8E-47 386.7 18.6 257 78-414 18-277 (306)
21 3fvq_A Fe(3+) IONS import ATP- 100.0 1.3E-41 4.3E-46 386.7 25.0 214 855-1093 4-223 (359)
22 1b0u_A Histidine permease; ABC 100.0 2.9E-41 1E-45 371.8 26.5 214 856-1094 7-238 (262)
23 4g1u_C Hemin import ATP-bindin 100.0 5E-41 1.7E-45 370.3 27.3 204 165-413 24-236 (266)
24 2yyz_A Sugar ABC transporter, 100.0 5.8E-41 2E-45 382.7 28.5 207 165-414 16-223 (359)
25 3gfo_A Cobalt import ATP-bindi 100.0 3.9E-41 1.3E-45 372.1 26.2 206 166-414 22-233 (275)
26 2olj_A Amino acid ABC transpor 100.0 1.2E-40 4.2E-45 366.1 29.4 205 166-414 38-248 (263)
27 1vpl_A ABC transporter, ATP-bi 100.0 5.5E-41 1.9E-45 367.7 26.0 214 855-1093 15-230 (256)
28 2it1_A 362AA long hypothetical 100.0 7.2E-41 2.5E-45 382.3 28.0 207 165-414 16-223 (362)
29 2pcj_A ABC transporter, lipopr 100.0 8E-41 2.7E-45 360.1 26.6 200 165-409 17-223 (224)
30 2r6f_A Excinuclease ABC subuni 100.0 2.4E-40 8.2E-45 411.3 33.8 196 883-1094 639-938 (972)
31 1b0u_A Histidine permease; ABC 100.0 9.7E-41 3.3E-45 367.7 26.4 205 166-414 20-242 (262)
32 1g29_1 MALK, maltose transport 100.0 1.5E-40 5.3E-45 381.8 28.9 207 165-414 16-229 (372)
33 1g6h_A High-affinity branched- 100.0 3.6E-41 1.2E-45 370.5 22.1 218 855-1094 7-238 (257)
34 1v43_A Sugar-binding transport 100.0 1.2E-40 4.1E-45 381.8 26.6 206 166-414 25-231 (372)
35 1z47_A CYSA, putative ABC-tran 100.0 1.1E-40 3.6E-45 379.5 25.9 215 855-1093 14-230 (355)
36 3d31_A Sulfate/molybdate ABC t 100.0 1.3E-40 4.5E-45 378.6 26.3 201 167-413 15-216 (348)
37 1ji0_A ABC transporter; ATP bi 100.0 1.1E-40 3.8E-45 362.8 24.6 214 855-1094 6-224 (240)
38 1vpl_A ABC transporter, ATP-bi 100.0 2.8E-40 9.5E-45 362.0 27.7 205 166-414 29-235 (256)
39 4g1u_C Hemin import ATP-bindin 100.0 7.4E-41 2.5E-45 369.0 23.2 213 855-1094 11-233 (266)
40 2it1_A 362AA long hypothetical 100.0 1.7E-40 5.7E-45 379.3 26.6 213 856-1093 4-218 (362)
41 1oxx_K GLCV, glucose, ABC tran 100.0 1.4E-40 4.7E-45 380.0 25.1 205 167-414 20-230 (353)
42 2yyz_A Sugar ABC transporter, 100.0 1.4E-40 4.8E-45 379.5 25.1 213 856-1093 4-218 (359)
43 1z47_A CYSA, putative ABC-tran 100.0 2.3E-40 7.9E-45 376.7 26.6 206 166-414 29-235 (355)
44 1g29_1 MALK, maltose transport 100.0 2.7E-40 9.3E-45 379.7 27.3 213 856-1093 4-224 (372)
45 1g6h_A High-affinity branched- 100.0 1.9E-40 6.6E-45 364.6 24.1 215 166-411 21-239 (257)
46 1ji0_A ABC transporter; ATP bi 100.0 3.7E-40 1.3E-44 358.7 25.9 203 166-413 20-227 (240)
47 2vf7_A UVRA2, excinuclease ABC 100.0 1.1E-39 3.7E-44 406.5 32.3 106 981-1093 708-822 (842)
48 1v43_A Sugar-binding transport 100.0 2.7E-40 9.1E-45 379.0 24.7 213 856-1093 12-226 (372)
49 1oxx_K GLCV, glucose, ABC tran 100.0 1.6E-40 5.6E-45 379.4 22.2 213 856-1093 4-225 (353)
50 2onk_A Molybdate/tungstate ABC 100.0 4.7E-40 1.6E-44 357.1 24.3 202 167-414 14-216 (240)
51 3d31_A Sulfate/molybdate ABC t 100.0 3.9E-40 1.3E-44 374.7 22.7 209 856-1093 2-212 (348)
52 2ihy_A ABC transporter, ATP-bi 100.0 3E-40 1E-44 366.4 20.0 221 850-1093 16-247 (279)
53 2d2e_A SUFC protein; ABC-ATPas 100.0 8.5E-40 2.9E-44 358.1 23.2 219 856-1094 4-229 (250)
54 3nh6_A ATP-binding cassette SU 100.0 8.1E-40 2.8E-44 366.1 23.4 213 852-1093 50-272 (306)
55 2yz2_A Putative ABC transporte 100.0 6.4E-40 2.2E-44 362.2 22.1 217 856-1093 3-222 (266)
56 2onk_A Molybdate/tungstate ABC 100.0 5.7E-40 1.9E-44 356.4 21.3 209 856-1094 2-212 (240)
57 2ygr_A Uvrabc system protein A 100.0 5.8E-39 2E-43 400.5 33.3 196 883-1094 657-956 (993)
58 2yz2_A Putative ABC transporte 100.0 4E-39 1.4E-43 355.8 24.2 205 165-414 20-227 (266)
59 2nq2_C Hypothetical ABC transp 100.0 8.3E-39 2.8E-43 350.2 26.0 206 856-1093 5-212 (253)
60 2zu0_C Probable ATP-dependent 100.0 7.8E-39 2.7E-43 353.5 25.9 221 855-1094 20-250 (267)
61 2ihy_A ABC transporter, ATP-bi 100.0 5.1E-39 1.7E-43 356.5 22.4 208 166-412 35-250 (279)
62 2qi9_C Vitamin B12 import ATP- 100.0 5.5E-39 1.9E-43 350.4 21.8 203 856-1093 5-217 (249)
63 2ff7_A Alpha-hemolysin translo 100.0 8E-39 2.7E-43 349.3 23.0 212 854-1093 6-227 (247)
64 2ff7_A Alpha-hemolysin translo 100.0 1.2E-38 4.1E-43 347.9 24.0 200 165-413 22-231 (247)
65 2ixe_A Antigen peptide transpo 100.0 4.3E-39 1.5E-43 356.1 19.6 214 855-1093 16-240 (271)
66 2d2e_A SUFC protein; ABC-ATPas 100.0 1.6E-38 5.3E-43 348.0 22.2 205 165-411 16-230 (250)
67 4a82_A Cystic fibrosis transme 100.0 5.1E-39 1.8E-43 393.4 19.4 258 78-414 304-564 (578)
68 1sgw_A Putative ABC transporte 100.0 3.3E-39 1.1E-43 343.8 15.3 197 855-1081 10-206 (214)
69 2ixe_A Antigen peptide transpo 100.0 2.1E-38 7.3E-43 350.5 22.3 209 165-414 32-245 (271)
70 2nq2_C Hypothetical ABC transp 100.0 1E-37 3.6E-42 341.5 27.2 197 165-412 18-215 (253)
71 2zu0_C Probable ATP-dependent 100.0 8.6E-38 2.9E-42 345.2 25.7 220 166-422 34-261 (267)
72 3qf4_A ABC transporter, ATP-bi 100.0 9.2E-39 3.2E-43 391.3 19.4 258 78-414 306-566 (587)
73 1mv5_A LMRA, multidrug resista 100.0 9.9E-39 3.4E-43 348.3 16.3 210 856-1093 2-221 (243)
74 1mv5_A LMRA, multidrug resista 100.0 2.7E-38 9.4E-43 344.8 17.1 202 165-414 15-226 (243)
75 2pjz_A Hypothetical protein ST 100.0 1.9E-37 6.4E-42 340.7 23.8 194 165-413 18-214 (263)
76 2ghi_A Transport protein; mult 100.0 2.2E-37 7.5E-42 340.5 22.7 200 165-414 33-242 (260)
77 2qi9_C Vitamin B12 import ATP- 100.0 1.7E-37 5.8E-42 338.6 21.1 197 166-412 14-220 (249)
78 2yl4_A ATP-binding cassette SU 100.0 1.5E-37 5.2E-42 382.0 23.1 255 78-414 305-570 (595)
79 2ghi_A Transport protein; mult 100.0 1.9E-37 6.4E-42 341.1 20.6 211 855-1093 17-237 (260)
80 4f4c_A Multidrug resistance pr 100.0 2.2E-38 7.7E-43 419.0 15.3 261 78-414 1041-1304(1321)
81 3qf4_B Uncharacterized ABC tra 100.0 3.5E-38 1.2E-42 387.3 15.7 256 78-414 320-578 (598)
82 3gd7_A Fusion complex of cysti 100.0 8.9E-38 3E-42 360.2 17.9 199 165-414 34-242 (390)
83 3b5x_A Lipid A export ATP-bind 100.0 3.8E-37 1.3E-41 377.4 23.4 257 78-414 308-567 (582)
84 2pjz_A Hypothetical protein ST 100.0 3.3E-37 1.1E-41 338.7 20.2 206 856-1093 2-210 (263)
85 3b60_A Lipid A export ATP-bind 100.0 3.5E-37 1.2E-41 377.7 22.3 257 78-414 308-567 (582)
86 1sgw_A Putative ABC transporte 100.0 2.5E-37 8.6E-42 329.3 17.3 188 166-403 23-210 (214)
87 2pze_A Cystic fibrosis transme 100.0 1.8E-36 6E-41 327.4 22.8 196 165-413 21-217 (229)
88 2pze_A Cystic fibrosis transme 100.0 1.2E-36 4.2E-41 328.6 20.5 200 855-1093 6-213 (229)
89 2cbz_A Multidrug resistance-as 100.0 7.2E-37 2.5E-41 332.0 18.6 196 165-414 18-217 (237)
90 3gd7_A Fusion complex of cysti 100.0 3.9E-37 1.3E-41 354.8 17.4 212 853-1093 17-237 (390)
91 3b5x_A Lipid A export ATP-bind 100.0 1.1E-34 3.7E-39 355.7 40.0 214 853-1093 339-562 (582)
92 3qf4_B Uncharacterized ABC tra 100.0 3.1E-35 1.1E-39 361.1 34.0 213 853-1093 352-573 (598)
93 2cbz_A Multidrug resistance-as 100.0 2.4E-36 8.1E-41 327.9 19.5 199 856-1093 4-212 (237)
94 2yl4_A ATP-binding cassette SU 100.0 9.7E-36 3.3E-40 365.9 24.9 218 854-1095 339-567 (595)
95 3qf4_A ABC transporter, ATP-bi 100.0 1.5E-36 5.2E-41 371.6 17.5 214 852-1093 338-561 (587)
96 4a82_A Cystic fibrosis transme 100.0 2.8E-36 9.5E-41 369.2 19.7 214 852-1093 336-559 (578)
97 3b60_A Lipid A export ATP-bind 100.0 7.1E-36 2.4E-40 366.2 22.5 214 853-1093 339-562 (582)
98 3g5u_A MCG1178, multidrug resi 100.0 6.6E-35 2.3E-39 385.0 17.6 260 78-414 994-1258(1284)
99 2bbs_A Cystic fibrosis transme 100.0 3.4E-34 1.2E-38 319.1 19.4 195 855-1093 40-242 (290)
100 2bbs_A Cystic fibrosis transme 100.0 3.6E-34 1.2E-38 318.8 18.4 194 166-413 52-246 (290)
101 3bk7_A ABC transporter ATP-bin 100.0 3.7E-31 1.3E-35 322.7 21.0 191 167-414 371-563 (607)
102 1yqt_A RNAse L inhibitor; ATP- 100.0 4.5E-31 1.5E-35 318.9 20.1 191 167-414 301-493 (538)
103 3ozx_A RNAse L inhibitor; ATP 100.0 1.3E-30 4.5E-35 313.9 21.0 192 167-413 283-476 (538)
104 3j16_B RLI1P; ribosome recycli 100.0 7.1E-30 2.4E-34 310.7 19.5 192 166-414 361-559 (608)
105 2iw3_A Elongation factor 3A; a 100.0 2.6E-29 8.8E-34 315.6 22.1 193 855-1093 435-630 (986)
106 1tf7_A KAIC; homohexamer, hexa 100.0 1E-30 3.6E-35 316.7 2.5 153 889-1084 276-443 (525)
107 3ux8_A Excinuclease ABC, A sub 100.0 2.5E-29 8.6E-34 313.3 14.4 204 882-1094 32-294 (670)
108 3pih_A Uvrabc system protein A 99.9 1.1E-24 3.7E-29 273.9 22.9 110 298-414 784-902 (916)
109 2r6f_A Excinuclease ABC subuni 99.9 4.3E-25 1.5E-29 274.9 17.6 106 300-413 826-941 (972)
110 2vf7_A UVRA2, excinuclease ABC 99.9 1E-24 3.5E-29 272.0 16.9 108 298-413 709-826 (842)
111 2ygr_A Uvrabc system protein A 99.9 1.3E-24 4.5E-29 271.6 17.4 108 299-414 843-960 (993)
112 2npi_A Protein CLP1; CLP1-PCF1 99.9 6.1E-27 2.1E-31 276.5 -5.5 185 169-413 129-337 (460)
113 4aby_A DNA repair protein RECN 99.9 1.6E-24 5.6E-29 255.2 14.1 202 882-1089 49-379 (415)
114 2npi_A Protein CLP1; CLP1-PCF1 99.9 7.8E-27 2.7E-31 275.6 -7.8 182 886-1093 130-333 (460)
115 4aby_A DNA repair protein RECN 99.9 1.7E-23 5.9E-28 246.5 16.9 236 165-407 48-381 (415)
116 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 5.4E-22 1.8E-26 228.9 16.1 82 1005-1089 277-364 (365)
117 3b85_A Phosphate starvation-in 99.9 1.3E-25 4.3E-30 238.3 -13.7 142 881-1068 13-159 (208)
118 4gp7_A Metallophosphoesterase; 99.9 7.5E-23 2.6E-27 210.8 3.5 150 886-1077 1-167 (171)
119 1e69_A Chromosome segregation 99.9 9.1E-22 3.1E-26 223.6 12.6 86 1006-1094 218-309 (322)
120 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 3E-21 1E-25 222.7 14.4 84 319-405 275-364 (365)
121 3b85_A Phosphate starvation-in 99.8 1.1E-23 3.8E-28 223.4 -8.2 150 163-388 11-161 (208)
122 1tq4_A IIGP1, interferon-induc 99.8 7.8E-23 2.7E-27 237.2 -6.6 172 165-396 36-248 (413)
123 1e69_A Chromosome segregation 99.8 1E-20 3.4E-25 215.0 10.2 88 320-411 216-310 (322)
124 2v9p_A Replication protein E1; 99.8 1.5E-23 5E-28 233.7 -13.7 157 166-419 114-271 (305)
125 1tq4_A IIGP1, interferon-induc 99.8 3.9E-23 1.3E-27 239.7 -10.9 170 882-1079 37-248 (413)
126 1ye8_A Protein THEP1, hypothet 99.8 2.6E-21 8.8E-26 200.3 3.0 150 896-1094 2-164 (178)
127 1znw_A Guanylate kinase, GMP k 99.8 1.1E-23 3.9E-28 223.9 -17.0 184 881-1086 9-206 (207)
128 4gp7_A Metallophosphoesterase; 99.8 5.9E-21 2E-25 196.6 2.3 66 323-390 83-164 (171)
129 1ye8_A Protein THEP1, hypothet 99.8 5.5E-21 1.9E-25 197.8 1.2 149 180-405 2-159 (178)
130 2v9p_A Replication protein E1; 99.8 6.1E-23 2.1E-27 228.7 -21.4 160 855-1093 101-261 (305)
131 3b9q_A Chloroplast SRP recepto 99.8 2.5E-20 8.6E-25 208.8 -0.6 174 168-403 90-284 (302)
132 3b9q_A Chloroplast SRP recepto 99.8 2.3E-20 7.8E-25 209.2 -1.7 173 884-1085 90-283 (302)
133 3sop_A Neuronal-specific septi 99.8 3.3E-20 1.1E-24 204.8 -1.5 145 180-382 4-148 (270)
134 2o5v_A DNA replication and rep 99.7 4.6E-18 1.6E-22 194.3 14.4 86 318-412 259-354 (359)
135 3sop_A Neuronal-specific septi 99.7 1.5E-20 5.1E-25 207.5 -6.6 148 896-1068 4-151 (270)
136 3qkt_A DNA double-strand break 99.7 2.3E-17 7.8E-22 188.7 18.5 76 1005-1082 246-327 (339)
137 1z6g_A Guanylate kinase; struc 99.7 4E-22 1.4E-26 213.7 -20.4 177 882-1079 11-205 (218)
138 1z6g_A Guanylate kinase; struc 99.7 1.3E-21 4.5E-26 209.6 -16.4 152 165-370 10-174 (218)
139 2pt7_A CAG-ALFA; ATPase, prote 99.7 1.8E-19 6.3E-24 204.6 0.2 131 883-1085 160-291 (330)
140 2og2_A Putative signal recogni 99.7 1.4E-19 4.7E-24 206.4 -1.2 170 885-1084 148-339 (359)
141 2og2_A Putative signal recogni 99.7 2.6E-19 8.9E-24 204.2 0.8 173 169-403 148-341 (359)
142 1znw_A Guanylate kinase, GMP k 99.7 5.7E-21 1.9E-25 203.0 -12.2 180 165-399 9-202 (207)
143 2dpy_A FLII, flagellum-specifi 99.7 6.9E-20 2.4E-24 215.2 -5.1 179 165-412 145-342 (438)
144 2dpy_A FLII, flagellum-specifi 99.7 1.3E-19 4.6E-24 212.8 -6.1 190 854-1094 130-340 (438)
145 2pt7_A CAG-ALFA; ATPase, prote 99.7 2.4E-18 8.2E-23 195.4 2.3 133 167-403 160-292 (330)
146 2o5v_A DNA replication and rep 99.7 2.9E-17 1E-21 187.6 10.0 79 1007-1094 265-352 (359)
147 1cr0_A DNA primase/helicase; R 99.7 5.8E-18 2E-22 190.0 3.8 183 882-1085 23-236 (296)
148 3aez_A Pantothenate kinase; tr 99.7 3.9E-19 1.3E-23 200.1 -6.2 128 170-356 81-209 (312)
149 4ad8_A DNA repair protein RECN 99.7 1.5E-16 5E-21 192.3 13.4 78 320-401 393-473 (517)
150 3qkt_A DNA double-strand break 99.7 6.8E-16 2.3E-20 176.4 17.7 81 319-402 244-332 (339)
151 1cr0_A DNA primase/helicase; R 99.7 1.6E-17 5.6E-22 186.3 4.1 185 165-403 22-237 (296)
152 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 1.7E-16 6E-21 158.4 10.4 76 1005-1082 55-136 (148)
153 3aez_A Pantothenate kinase; tr 99.7 2.1E-19 7.2E-24 202.2 -12.6 157 891-1082 87-243 (312)
154 2o8b_B DNA mismatch repair pro 99.6 2.7E-17 9.2E-22 210.7 1.7 152 881-1088 769-930 (1022)
155 2jeo_A Uridine-cytidine kinase 99.6 4.6E-17 1.6E-21 177.5 1.9 140 163-357 10-149 (245)
156 3thx_A DNA mismatch repair pro 99.6 5.6E-16 1.9E-20 196.1 11.7 148 881-1093 649-808 (934)
157 2ehv_A Hypothetical protein PH 99.6 2.8E-17 9.5E-22 179.1 -0.1 162 890-1082 26-206 (251)
158 2jeo_A Uridine-cytidine kinase 99.6 3.3E-17 1.1E-21 178.7 -0.9 156 879-1067 10-165 (245)
159 2obl_A ESCN; ATPase, hydrolase 99.6 2.6E-17 8.9E-22 187.7 -2.9 190 855-1094 45-251 (347)
160 2eyu_A Twitching motility prot 99.6 1.2E-16 4.2E-21 175.3 2.3 130 883-1082 16-146 (261)
161 3thx_A DNA mismatch repair pro 99.6 9.4E-16 3.2E-20 194.0 9.2 89 322-412 720-811 (934)
162 2obl_A ESCN; ATPase, hydrolase 99.6 1.7E-16 5.8E-21 180.9 1.0 180 165-412 59-253 (347)
163 1tf7_A KAIC; homohexamer, hexa 99.6 2.1E-15 7.1E-20 182.5 9.4 155 172-402 275-444 (525)
164 4a74_A DNA repair and recombin 99.6 2.6E-16 8.9E-21 169.1 0.9 153 889-1085 20-201 (231)
165 3thx_B DNA mismatch repair pro 99.6 1.8E-15 6.3E-20 190.8 8.5 144 880-1077 659-804 (918)
166 4a74_A DNA repair and recombin 99.6 3.8E-16 1.3E-20 167.8 1.9 154 173-402 20-201 (231)
167 1ewq_A DNA mismatch repair pro 99.5 9.4E-16 3.2E-20 190.8 1.7 128 881-1068 566-699 (765)
168 2o8b_B DNA mismatch repair pro 99.5 6.9E-16 2.3E-20 197.7 0.4 160 165-411 769-939 (1022)
169 3asz_A Uridine kinase; cytidin 99.5 1.5E-16 5.1E-21 169.1 -5.3 145 175-383 3-160 (211)
170 2i3b_A HCR-ntpase, human cance 99.5 3.6E-17 1.2E-21 170.6 -10.6 158 178-407 1-169 (189)
171 1pzn_A RAD51, DNA repair and r 99.5 5E-16 1.7E-20 177.8 -2.4 168 167-409 119-310 (349)
172 1f2t_B RAD50 ABC-ATPase; DNA d 99.5 2.4E-14 8.2E-19 142.9 9.9 83 318-403 52-142 (148)
173 2eyu_A Twitching motility prot 99.5 2.4E-15 8.4E-20 164.9 2.9 133 166-400 15-147 (261)
174 2qnr_A Septin-2, protein NEDD5 99.5 4.8E-16 1.6E-20 174.5 -3.1 157 163-385 9-167 (301)
175 3asz_A Uridine kinase; cytidin 99.5 4.2E-17 1.4E-21 173.4 -11.5 145 891-1067 3-161 (211)
176 2ehv_A Hypothetical protein PH 99.5 1.3E-15 4.6E-20 165.7 -0.1 169 167-399 18-206 (251)
177 1rj9_A FTSY, signal recognitio 99.5 1.2E-15 4E-20 170.9 -0.7 147 893-1068 101-259 (304)
178 1wb9_A DNA mismatch repair pro 99.5 4E-15 1.4E-19 186.3 3.6 147 881-1082 595-743 (800)
179 2qnr_A Septin-2, protein NEDD5 99.5 1.1E-15 3.8E-20 171.5 -1.9 156 880-1068 10-168 (301)
180 1w1w_A Structural maintenance 99.5 5.5E-14 1.9E-18 166.0 12.2 75 322-399 332-410 (430)
181 3thx_B DNA mismatch repair pro 99.5 2.2E-14 7.5E-19 181.0 8.8 155 165-405 660-816 (918)
182 1rj9_A FTSY, signal recognitio 99.5 2.1E-15 7.3E-20 168.8 -0.8 148 177-384 101-257 (304)
183 3szr_A Interferon-induced GTP- 99.5 8.3E-16 2.9E-20 188.4 -5.1 166 181-415 48-238 (608)
184 1pzn_A RAD51, DNA repair and r 99.5 1.6E-15 5.6E-20 173.5 -3.2 142 884-1068 120-287 (349)
185 1ewq_A DNA mismatch repair pro 99.5 1E-14 3.6E-19 181.4 3.6 132 165-392 566-704 (765)
186 1nlf_A Regulatory protein REPA 99.5 1E-13 3.4E-18 154.1 10.8 151 890-1068 26-182 (279)
187 2w0m_A SSO2452; RECA, SSPF, un 99.5 9.4E-14 3.2E-18 149.1 9.7 166 883-1084 11-192 (235)
188 2w0m_A SSO2452; RECA, SSPF, un 99.4 4.7E-15 1.6E-19 159.3 -1.5 171 165-401 9-192 (235)
189 3jvv_A Twitching mobility prot 99.4 2E-14 6.9E-19 164.3 3.5 126 890-1083 119-245 (356)
190 2i3b_A HCR-ntpase, human cance 99.4 2.8E-15 9.6E-20 156.3 -5.6 159 894-1092 1-170 (189)
191 1wb9_A DNA mismatch repair pro 99.4 3.5E-14 1.2E-18 177.8 2.5 156 165-407 595-751 (800)
192 3kta_B Chromosome segregation 99.4 6.3E-13 2.1E-17 136.1 10.2 85 1005-1092 62-152 (173)
193 1nlf_A Regulatory protein REPA 99.4 3E-13 1E-17 150.2 8.2 153 174-387 26-183 (279)
194 4ad8_A DNA repair protein RECN 99.4 4.1E-13 1.4E-17 162.2 9.6 76 1006-1084 395-473 (517)
195 2qag_C Septin-7; cell cycle, c 99.4 2.2E-14 7.4E-19 167.1 -2.4 164 855-1068 11-178 (418)
196 3szr_A Interferon-induced GTP- 99.4 3.9E-14 1.3E-18 173.6 -0.5 136 897-1068 48-197 (608)
197 1s96_A Guanylate kinase, GMP k 99.3 6.7E-14 2.3E-18 149.4 -1.9 149 173-417 11-163 (219)
198 1pui_A ENGB, probable GTP-bind 99.3 1.8E-13 6.1E-18 144.7 1.3 180 856-1059 4-202 (210)
199 1s96_A Guanylate kinase, GMP k 99.3 4.5E-14 1.5E-18 150.8 -3.3 133 887-1068 9-141 (219)
200 2qag_C Septin-7; cell cycle, c 99.3 1.8E-13 6.2E-18 159.3 1.4 149 165-383 24-176 (418)
201 3kta_B Chromosome segregation 99.3 7.7E-12 2.6E-16 128.0 13.2 91 320-414 61-158 (173)
202 3jvv_A Twitching mobility prot 99.3 1.9E-13 6.4E-18 156.3 1.0 128 174-401 119-246 (356)
203 2cvh_A DNA repair and recombin 99.3 3.2E-12 1.1E-16 136.1 10.0 153 883-1084 8-185 (220)
204 2bdt_A BH3686; alpha-beta prot 99.3 4.6E-15 1.6E-19 154.8 -12.1 169 178-412 2-182 (189)
205 1lw7_A Transcriptional regulat 99.3 1.7E-15 5.7E-20 175.1 -17.6 170 167-399 157-342 (365)
206 1pui_A ENGB, probable GTP-bind 99.3 6.3E-14 2.2E-18 148.2 -4.9 67 301-371 131-198 (210)
207 1zp6_A Hypothetical protein AT 99.3 3.5E-13 1.2E-17 140.5 0.5 141 174-368 5-146 (191)
208 2qag_B Septin-6, protein NEDD5 99.3 1.6E-13 5.6E-18 158.8 -2.5 171 884-1066 30-218 (427)
209 2f1r_A Molybdopterin-guanine d 99.3 5E-14 1.7E-18 144.2 -6.1 138 179-371 3-161 (171)
210 1htw_A HI0065; nucleotide-bind 99.3 1.2E-13 4.1E-18 139.6 -3.3 78 165-249 20-97 (158)
211 2ewv_A Twitching motility prot 99.3 5.3E-13 1.8E-17 154.0 1.4 129 883-1081 127-256 (372)
212 2gza_A Type IV secretion syste 99.3 1.2E-12 4.2E-17 150.4 4.5 136 167-402 164-303 (361)
213 2gza_A Type IV secretion syste 99.3 4.2E-13 1.4E-17 154.3 0.3 138 883-1085 164-303 (361)
214 1zp6_A Hypothetical protein AT 99.3 1.7E-14 5.8E-19 150.5 -10.7 154 890-1065 5-159 (191)
215 2cvh_A DNA repair and recombin 99.3 7.2E-12 2.5E-16 133.3 8.7 77 324-401 85-185 (220)
216 2bbw_A Adenylate kinase 4, AK4 99.2 1E-13 3.5E-18 151.0 -6.0 157 177-371 26-198 (246)
217 2bdt_A BH3686; alpha-beta prot 99.2 1.1E-15 3.7E-20 159.5 -20.9 170 894-1094 2-180 (189)
218 2qag_B Septin-6, protein NEDD5 99.2 1.8E-12 6.2E-17 150.1 -0.1 161 168-368 30-203 (427)
219 1n0w_A DNA repair protein RAD5 99.2 1.2E-11 4.1E-16 133.8 6.3 151 889-1084 19-209 (243)
220 1nij_A Hypothetical protein YJ 99.2 5.4E-15 1.8E-19 167.3 -21.1 162 895-1076 5-197 (318)
221 1lw7_A Transcriptional regulat 99.2 7.2E-14 2.5E-18 161.3 -12.5 166 884-1082 158-342 (365)
222 3auy_A DNA double-strand break 99.2 3.1E-11 1.1E-15 139.5 9.2 77 1006-1085 279-362 (371)
223 2ewv_A Twitching motility prot 99.2 4.8E-12 1.6E-16 145.9 1.8 131 167-399 127-257 (372)
224 2bbw_A Adenylate kinase 4, AK4 99.2 1.3E-13 4.4E-18 150.2 -10.9 144 893-1056 26-199 (246)
225 1n0w_A DNA repair protein RAD5 99.2 1.5E-11 5.1E-16 133.0 5.0 45 173-217 19-67 (243)
226 2rcn_A Probable GTPase ENGC; Y 99.1 4.5E-12 1.5E-16 144.0 0.2 121 168-338 206-328 (358)
227 2rcn_A Probable GTPase ENGC; Y 99.1 1.1E-11 3.8E-16 140.8 3.0 114 893-1022 214-328 (358)
228 1w1w_A Structural maintenance 99.1 7.1E-11 2.4E-15 139.3 9.7 76 1006-1083 332-411 (430)
229 1nij_A Hypothetical protein YJ 99.1 1.3E-13 4.4E-18 156.0 -13.3 161 178-392 4-196 (318)
230 2yhs_A FTSY, cell division pro 99.1 4.6E-12 1.6E-16 148.4 -1.3 153 884-1065 283-447 (503)
231 3e70_C DPA, signal recognition 99.1 8.6E-12 2.9E-16 140.9 0.8 74 175-251 126-208 (328)
232 2yhs_A FTSY, cell division pro 99.1 1.5E-11 5.2E-16 144.0 2.7 81 168-251 283-372 (503)
233 1odf_A YGR205W, hypothetical 3 99.1 5.7E-12 2E-16 140.2 -1.1 127 176-358 29-169 (290)
234 1udx_A The GTP-binding protein 99.1 2.7E-12 9.1E-17 149.4 -4.1 167 884-1076 147-317 (416)
235 1htw_A HI0065; nucleotide-bind 99.1 4.1E-12 1.4E-16 128.3 -3.3 77 882-964 21-97 (158)
236 2qm8_A GTPase/ATPase; G protei 99.1 1.5E-12 5.2E-17 148.2 -8.4 180 166-370 43-259 (337)
237 2kjq_A DNAA-related protein; s 99.1 1E-10 3.5E-15 117.0 5.9 44 1023-1067 81-125 (149)
238 2f1r_A Molybdopterin-guanine d 99.0 1.4E-12 4.8E-17 133.5 -8.9 138 895-1057 3-163 (171)
239 1p9r_A General secretion pathw 99.0 4.5E-12 1.6E-16 147.6 -6.6 137 165-346 156-314 (418)
240 3auy_A DNA double-strand break 99.0 6.2E-10 2.1E-14 128.6 11.1 97 299-399 245-359 (371)
241 3e70_C DPA, signal recognition 99.0 5.5E-11 1.9E-15 134.3 2.1 144 891-1067 126-279 (328)
242 3ec2_A DNA replication protein 99.0 1.8E-10 6.1E-15 118.8 5.6 46 1023-1068 98-144 (180)
243 2qm8_A GTPase/ATPase; G protei 99.0 1.2E-12 4.3E-17 148.9 -12.6 164 882-1055 43-260 (337)
244 2yv5_A YJEQ protein; hydrolase 99.0 8.4E-11 2.9E-15 131.8 2.2 123 176-336 163-300 (302)
245 2oap_1 GSPE-2, type II secreti 99.0 2E-12 6.8E-17 154.6 -11.8 85 165-252 247-331 (511)
246 3ec2_A DNA replication protein 99.0 1.1E-10 3.6E-15 120.5 1.8 48 339-387 98-146 (180)
247 1odf_A YGR205W, hypothetical 3 98.9 3.9E-11 1.3E-15 133.5 -2.7 129 892-1042 29-169 (290)
248 3lda_A DNA repair protein RAD5 98.9 4.4E-10 1.5E-14 130.2 6.1 152 889-1084 173-363 (400)
249 2oap_1 GSPE-2, type II secreti 98.9 6.5E-13 2.2E-17 158.8 -19.1 178 882-1076 248-458 (511)
250 1lvg_A Guanylate kinase, GMP k 98.9 2.3E-13 8E-18 143.1 -20.5 57 334-400 116-173 (198)
251 3lda_A DNA repair protein RAD5 98.9 4.7E-10 1.6E-14 129.9 5.2 62 340-402 272-364 (400)
252 1udx_A The GTP-binding protein 98.9 5.1E-10 1.8E-14 130.2 5.3 169 168-394 147-318 (416)
253 2yv5_A YJEQ protein; hydrolase 98.9 8.1E-11 2.8E-15 131.9 -1.5 122 891-1021 162-301 (302)
254 1sxj_E Activator 1 40 kDa subu 98.9 6.7E-10 2.3E-14 127.2 5.2 134 897-1068 39-175 (354)
255 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 8.8E-12 3E-16 143.6 -10.6 169 174-410 16-209 (392)
256 2x8a_A Nuclear valosin-contain 98.9 4.1E-12 1.4E-16 140.5 -13.0 142 165-366 33-190 (274)
257 1p9r_A General secretion pathw 98.9 3.7E-12 1.3E-16 148.4 -14.1 132 882-1030 157-314 (418)
258 3c8u_A Fructokinase; YP_612366 98.9 1.8E-11 6.1E-16 129.7 -7.9 30 175-204 19-48 (208)
259 2kjq_A DNAA-related protein; s 98.8 2.9E-09 9.8E-14 106.4 6.5 34 166-204 29-62 (149)
260 1u0l_A Probable GTPase ENGC; p 98.8 6.2E-10 2.1E-14 124.8 0.3 73 174-250 165-259 (301)
261 3c8u_A Fructokinase; YP_612366 98.8 4.8E-11 1.6E-15 126.3 -9.3 149 891-1065 19-181 (208)
262 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 1.1E-11 3.7E-16 142.8 -15.5 172 890-1095 16-210 (392)
263 1lvg_A Guanylate kinase, GMP k 98.7 4.2E-12 1.4E-16 133.5 -18.9 56 1018-1082 116-172 (198)
264 1sxj_E Activator 1 40 kDa subu 98.7 1.1E-08 3.8E-13 117.0 7.6 135 181-386 39-175 (354)
265 1sq5_A Pantothenate kinase; P- 98.7 7.5E-11 2.6E-15 132.7 -10.4 98 855-969 37-156 (308)
266 1in4_A RUVB, holliday junction 98.7 6.8E-11 2.3E-15 134.7 -10.9 153 166-372 32-195 (334)
267 1t9h_A YLOQ, probable GTPase E 98.7 4.2E-09 1.5E-13 117.4 2.1 72 173-248 168-248 (307)
268 1sq5_A Pantothenate kinase; P- 98.7 1.5E-09 5E-14 122.1 -2.2 74 176-254 78-156 (308)
269 1t9h_A YLOQ, probable GTPase E 98.6 1.9E-09 6.6E-14 120.2 -1.8 118 889-1014 168-302 (307)
270 1vma_A Cell division protein F 98.6 7.8E-09 2.7E-13 115.5 2.7 112 171-369 97-211 (306)
271 3euj_A Chromosome partition pr 98.6 6.3E-09 2.1E-13 122.5 1.9 53 165-221 17-69 (483)
272 2r6a_A DNAB helicase, replicat 98.6 3.8E-08 1.3E-12 116.7 8.2 178 883-1085 192-400 (454)
273 2x8a_A Nuclear valosin-contain 98.6 3E-11 1E-15 133.6 -17.8 141 882-1050 34-190 (274)
274 1vma_A Cell division protein F 98.6 2.3E-08 7.8E-13 111.8 4.4 112 887-1053 97-211 (306)
275 2dr3_A UPF0273 protein PH0284; 98.6 6E-09 2E-13 112.6 -0.7 60 1024-1083 127-196 (247)
276 1ls1_A Signal recognition part 98.6 2E-07 6.8E-12 103.9 11.4 128 885-1064 91-219 (295)
277 2px0_A Flagellar biosynthesis 98.5 8.8E-08 3E-12 106.7 7.6 142 176-406 103-247 (296)
278 2dr3_A UPF0273 protein PH0284; 98.5 2.6E-07 8.9E-12 99.6 11.2 60 340-400 127-196 (247)
279 1u0l_A Probable GTPase ENGC; p 98.5 2.5E-08 8.7E-13 111.6 3.0 100 891-999 166-288 (301)
280 1in4_A RUVB, holliday junction 98.5 4.8E-10 1.6E-14 127.6 -12.0 149 882-1055 32-194 (334)
281 3k1j_A LON protease, ATP-depen 98.5 1.2E-08 4.1E-13 125.3 -1.4 174 165-368 47-227 (604)
282 2zr9_A Protein RECA, recombina 98.5 3.7E-07 1.3E-11 104.1 10.6 71 1014-1084 126-230 (349)
283 3tr0_A Guanylate kinase, GMP k 98.5 8.2E-09 2.8E-13 108.4 -3.1 69 172-247 1-72 (205)
284 2r6a_A DNAB helicase, replicat 98.4 2.6E-07 8.8E-12 109.5 8.7 183 164-403 189-401 (454)
285 2px0_A Flagellar biosynthesis 98.4 1.2E-07 4.2E-12 105.5 5.6 140 892-1089 103-246 (296)
286 1iy2_A ATP-dependent metallopr 98.4 5.7E-10 2E-14 123.6 -13.8 76 166-248 63-142 (278)
287 1oix_A RAS-related protein RAB 98.4 5.8E-08 2E-12 100.9 1.2 43 324-368 146-188 (191)
288 1ixz_A ATP-dependent metallopr 98.4 9.5E-10 3.3E-14 120.0 -13.0 75 166-247 39-117 (254)
289 1ls1_A Signal recognition part 98.4 5.9E-07 2E-11 100.0 9.4 117 169-368 91-208 (295)
290 1oix_A RAS-related protein RAB 98.4 4.1E-08 1.4E-12 102.1 -0.0 38 1014-1053 152-189 (191)
291 2ius_A DNA translocase FTSK; n 98.4 3.7E-08 1.3E-12 116.8 -0.7 165 170-385 159-342 (512)
292 3euj_A Chromosome partition pr 98.4 5.8E-08 2E-12 114.3 0.5 50 882-934 18-67 (483)
293 2ius_A DNA translocase FTSK; n 98.3 4.7E-08 1.6E-12 115.9 -1.5 178 886-1080 159-361 (512)
294 3hr8_A Protein RECA; alpha and 98.3 4.4E-07 1.5E-11 103.2 6.0 42 173-217 56-98 (356)
295 2zr9_A Protein RECA, recombina 98.3 6.9E-07 2.4E-11 101.8 7.3 31 173-203 56-86 (349)
296 3k1j_A LON protease, ATP-depen 98.3 1.3E-08 4.4E-13 125.0 -7.7 160 880-1052 46-227 (604)
297 3tr0_A Guanylate kinase, GMP k 98.3 3.3E-08 1.1E-12 103.7 -3.8 68 888-961 1-71 (205)
298 3lnc_A Guanylate kinase, GMP k 98.3 2.2E-07 7.4E-12 99.7 2.1 40 165-204 14-54 (231)
299 1iy2_A ATP-dependent metallopr 98.2 1.3E-09 4.4E-14 120.7 -16.2 127 882-1034 63-194 (278)
300 1qhl_A Protein (cell division 98.2 3.3E-08 1.1E-12 105.5 -5.3 59 172-234 22-91 (227)
301 1ixz_A ATP-dependent metallopr 98.2 1.8E-09 6.1E-14 117.8 -15.8 129 882-1036 39-172 (254)
302 2f9l_A RAB11B, member RAS onco 98.1 2.7E-07 9.3E-12 96.3 -0.0 37 1016-1054 130-166 (199)
303 2qtf_A Protein HFLX, GTP-bindi 98.1 1.8E-06 6.3E-11 98.9 5.7 157 180-371 181-353 (364)
304 4eun_A Thermoresistant glucoki 98.1 1.7E-07 5.8E-12 98.2 -3.2 71 172-249 23-95 (200)
305 3lnc_A Guanylate kinase, GMP k 98.0 1.4E-06 4.7E-11 93.4 2.2 38 882-919 15-53 (231)
306 2ce7_A Cell division protein F 98.0 4.9E-06 1.7E-10 98.3 6.9 59 1010-1068 93-165 (476)
307 2f9l_A RAB11B, member RAS onco 98.0 3E-06 1E-10 88.3 4.3 38 331-370 129-166 (199)
308 2ce7_A Cell division protein F 98.0 1E-05 3.6E-10 95.5 8.8 60 326-385 93-164 (476)
309 3hr8_A Protein RECA; alpha and 98.0 2.9E-06 1E-10 96.4 3.8 28 890-917 57-84 (356)
310 1qhl_A Protein (cell division 97.9 2.8E-07 9.5E-12 98.3 -5.4 59 888-949 22-91 (227)
311 3kta_A Chromosome segregation 97.9 3.7E-06 1.3E-10 86.3 3.1 36 169-205 18-53 (182)
312 1zu4_A FTSY; GTPase, signal re 97.9 1.8E-06 6.3E-11 97.1 0.9 81 167-250 94-187 (320)
313 2xau_A PRE-mRNA-splicing facto 97.9 6.5E-06 2.2E-10 103.5 5.6 76 1006-1082 189-266 (773)
314 2j41_A Guanylate kinase; GMP, 97.9 4.1E-06 1.4E-10 87.6 3.0 33 173-205 1-33 (207)
315 2e87_A Hypothetical protein PH 97.9 2.1E-05 7.3E-10 90.0 9.0 61 1006-1068 230-293 (357)
316 4eun_A Thermoresistant glucoki 97.9 6.4E-07 2.2E-11 93.8 -3.9 69 888-962 23-93 (200)
317 2qtf_A Protein HFLX, GTP-bindi 97.8 1.6E-05 5.6E-10 90.9 7.4 150 893-1055 177-353 (364)
318 4a1f_A DNAB helicase, replicat 97.8 8.8E-06 3E-10 91.8 4.1 128 883-1065 35-164 (338)
319 3vaa_A Shikimate kinase, SK; s 97.8 5.6E-06 1.9E-10 86.5 2.2 41 163-203 10-50 (199)
320 4a1f_A DNAB helicase, replicat 97.8 1.6E-05 5.4E-10 89.7 6.0 39 164-202 32-70 (338)
321 3a00_A Guanylate kinase, GMP k 97.8 4.4E-06 1.5E-10 86.3 1.4 28 178-205 1-28 (186)
322 2dhr_A FTSH; AAA+ protein, hex 97.8 4.4E-07 1.5E-11 107.8 -7.9 49 166-221 54-102 (499)
323 4e22_A Cytidylate kinase; P-lo 97.7 2.4E-06 8.3E-11 92.9 -2.3 62 167-234 19-95 (252)
324 3uie_A Adenylyl-sulfate kinase 97.7 1.7E-06 5.9E-11 90.5 -3.5 52 165-220 12-65 (200)
325 2xau_A PRE-mRNA-splicing facto 97.7 2.6E-05 8.9E-10 98.1 5.5 74 321-395 188-262 (773)
326 3nwj_A ATSK2; P loop, shikimat 97.6 4E-06 1.4E-10 90.8 -1.8 38 166-203 33-73 (250)
327 3nwj_A ATSK2; P loop, shikimat 97.6 2.7E-06 9.2E-11 92.2 -3.2 51 855-917 17-71 (250)
328 2j41_A Guanylate kinase; GMP, 97.6 1.9E-05 6.6E-10 82.4 2.4 29 890-918 2-30 (207)
329 2dy1_A Elongation factor G; tr 97.6 2.2E-05 7.5E-10 97.2 3.1 133 888-1069 3-138 (665)
330 1ega_A Protein (GTP-binding pr 97.6 8E-05 2.7E-09 83.0 7.1 152 891-1079 6-170 (301)
331 1kgd_A CASK, peripheral plasma 97.5 2.9E-05 9.8E-10 79.7 3.0 38 176-215 3-40 (180)
332 3t34_A Dynamin-related protein 97.5 0.00014 4.9E-09 83.2 8.8 57 1008-1065 155-212 (360)
333 3kta_A Chromosome segregation 97.5 3.9E-05 1.3E-09 78.6 3.6 33 885-918 18-50 (182)
334 3vaa_A Shikimate kinase, SK; s 97.5 4.3E-05 1.5E-09 79.7 3.6 37 881-917 12-48 (199)
335 2vp4_A Deoxynucleoside kinase; 97.5 2E-05 7E-10 84.2 0.9 41 172-219 14-54 (230)
336 1fnn_A CDC6P, cell division co 97.5 0.00051 1.7E-08 78.8 12.5 44 1024-1068 124-170 (389)
337 1zu4_A FTSY; GTPase, signal re 97.4 1.9E-05 6.5E-10 88.7 -0.1 79 883-963 94-185 (320)
338 1jjv_A Dephospho-COA kinase; P 97.4 2.2E-05 7.6E-10 82.2 0.3 69 1009-1082 61-131 (206)
339 4e22_A Cytidylate kinase; P-lo 97.4 1.9E-05 6.4E-10 85.9 -0.4 57 892-950 25-96 (252)
340 3tau_A Guanylate kinase, GMP k 97.4 6.7E-05 2.3E-09 78.9 3.6 29 176-204 6-34 (208)
341 3bh0_A DNAB-like replicative h 97.4 0.0002 6.9E-09 80.3 7.5 38 164-201 54-91 (315)
342 1rz3_A Hypothetical protein rb 97.4 3.4E-05 1.1E-09 80.7 1.0 41 175-218 19-59 (201)
343 2dhr_A FTSH; AAA+ protein, hex 97.4 9E-07 3.1E-11 105.2 -12.5 46 883-934 55-100 (499)
344 3ney_A 55 kDa erythrocyte memb 97.4 5.3E-05 1.8E-09 78.7 2.3 29 175-203 16-44 (197)
345 3a00_A Guanylate kinase, GMP k 97.4 5.7E-05 1.9E-09 77.9 2.3 26 894-919 1-26 (186)
346 1svm_A Large T antigen; AAA+ f 97.3 2.9E-05 1E-09 89.0 -0.2 44 165-214 156-199 (377)
347 1knq_A Gluconate kinase; ALFA/ 97.3 6.8E-05 2.3E-09 76.2 2.4 37 176-219 6-42 (175)
348 1kgd_A CASK, peripheral plasma 97.3 8.7E-05 3E-09 76.0 3.1 38 893-931 4-41 (180)
349 3b9p_A CG5977-PA, isoform A; A 97.3 0.0011 3.7E-08 73.4 12.3 71 1009-1079 97-184 (297)
350 2vp4_A Deoxynucleoside kinase; 97.3 7E-05 2.4E-09 80.0 2.3 40 889-934 15-54 (230)
351 2qt1_A Nicotinamide riboside k 97.3 0.00013 4.5E-09 76.4 4.0 31 173-203 16-46 (207)
352 1jjv_A Dephospho-COA kinase; P 97.3 9.5E-05 3.3E-09 77.3 3.0 70 324-399 60-131 (206)
353 3t34_A Dynamin-related protein 97.3 2E-05 6.8E-10 90.3 -2.6 43 165-213 24-68 (360)
354 2e87_A Hypothetical protein PH 97.3 0.00056 1.9E-08 78.1 9.4 57 322-381 230-287 (357)
355 3b9p_A CG5977-PA, isoform A; A 97.2 0.0013 4.4E-08 72.7 12.0 27 176-202 52-78 (297)
356 1v5w_A DMC1, meiotic recombina 97.2 0.0014 4.7E-08 74.4 12.0 34 168-201 111-145 (343)
357 3bh0_A DNAB-like replicative h 97.2 0.00037 1.3E-08 78.1 7.1 34 883-916 57-90 (315)
358 1v5w_A DMC1, meiotic recombina 97.2 0.0015 5.1E-08 74.1 12.1 28 889-916 117-144 (343)
359 2dy1_A Elongation factor G; tr 97.2 4.2E-05 1.4E-09 94.6 -0.9 48 172-221 3-50 (665)
360 2z43_A DNA repair and recombin 97.2 0.0012 4.3E-08 74.2 11.2 36 167-202 95-131 (324)
361 3uie_A Adenylyl-sulfate kinase 97.2 0.00015 5.1E-09 75.6 3.1 49 883-934 14-64 (200)
362 3cr8_A Sulfate adenylyltranfer 97.1 8.3E-05 2.8E-09 89.4 0.8 42 174-218 365-408 (552)
363 3tqc_A Pantothenate kinase; bi 97.1 4.9E-05 1.7E-09 85.1 -1.3 25 180-204 94-118 (321)
364 2z43_A DNA repair and recombin 97.1 0.0016 5.5E-08 73.2 10.9 28 889-916 102-129 (324)
365 3tau_A Guanylate kinase, GMP k 97.0 0.00023 8E-09 74.7 3.2 28 892-919 6-33 (208)
366 1kag_A SKI, shikimate kinase I 97.0 0.0002 6.8E-09 72.4 2.4 27 177-203 3-29 (173)
367 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00033 1.1E-08 69.5 3.9 30 170-200 16-45 (149)
368 1svm_A Large T antigen; AAA+ f 97.0 7.9E-05 2.7E-09 85.4 -0.8 143 882-1036 157-312 (377)
369 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00033 1.1E-08 69.5 3.7 28 887-915 17-44 (149)
370 1fnn_A CDC6P, cell division co 96.9 0.0025 8.4E-08 73.0 10.9 29 177-205 41-71 (389)
371 2z4s_A Chromosomal replication 96.9 0.0005 1.7E-08 80.8 4.8 70 1024-1094 193-264 (440)
372 2p67_A LAO/AO transport system 96.9 0.0001 3.5E-09 83.7 -1.8 49 166-217 44-92 (341)
373 3ney_A 55 kDa erythrocyte memb 96.8 0.00046 1.6E-08 71.6 2.9 28 891-918 16-43 (197)
374 2www_A Methylmalonic aciduria 96.8 0.00029 1E-08 80.2 1.5 41 176-219 72-112 (349)
375 3kl4_A SRP54, signal recogniti 96.8 0.0021 7.3E-08 74.7 8.6 25 893-917 96-120 (433)
376 1rz3_A Hypothetical protein rb 96.8 0.00026 9E-09 73.8 0.8 41 891-933 19-59 (201)
377 3ice_A Transcription terminati 96.8 0.00026 8.8E-09 80.1 0.7 51 854-916 132-196 (422)
378 1knq_A Gluconate kinase; ALFA/ 96.7 0.00058 2E-08 69.2 3.0 37 892-934 6-42 (175)
379 2pez_A Bifunctional 3'-phospho 96.7 0.00031 1.1E-08 71.6 0.9 40 176-219 3-44 (179)
380 2z4s_A Chromosomal replication 96.7 0.00022 7.6E-09 83.8 -0.3 47 340-387 193-240 (440)
381 4fcw_A Chaperone protein CLPB; 96.7 0.0023 7.8E-08 71.1 7.8 29 177-205 46-74 (311)
382 2qby_A CDC6 homolog 1, cell di 96.7 0.00044 1.5E-08 79.1 1.9 26 892-917 43-68 (386)
383 4eaq_A DTMP kinase, thymidylat 96.7 0.00057 1.9E-08 72.9 2.5 38 167-204 12-52 (229)
384 1ypw_A Transitional endoplasmi 96.7 0.0012 4E-08 83.5 5.6 30 889-918 233-262 (806)
385 1cke_A CK, MSSA, protein (cyti 96.6 0.00017 5.7E-09 76.5 -2.0 34 178-214 5-41 (227)
386 1mky_A Probable GTP-binding pr 96.6 0.0015 5.1E-08 76.8 5.6 70 179-248 181-262 (439)
387 1ypw_A Transitional endoplasmi 96.6 0.0012 4E-08 83.5 4.8 32 173-204 233-264 (806)
388 3m6a_A ATP-dependent protease 96.6 0.00035 1.2E-08 84.3 0.1 46 167-216 98-143 (543)
389 3kl4_A SRP54, signal recogniti 96.6 0.0037 1.3E-07 72.6 8.6 37 177-216 96-132 (433)
390 3tqc_A Pantothenate kinase; bi 96.6 0.0002 6.8E-09 80.2 -2.0 38 881-918 73-116 (321)
391 2gj8_A MNME, tRNA modification 96.6 0.0022 7.4E-08 64.8 5.8 27 892-918 2-28 (172)
392 1kag_A SKI, shikimate kinase I 96.5 0.00082 2.8E-08 67.8 2.6 26 893-918 3-28 (173)
393 2qt1_A Nicotinamide riboside k 96.5 0.001 3.5E-08 69.4 3.3 30 889-918 16-45 (207)
394 1m7g_A Adenylylsulfate kinase; 96.5 0.00044 1.5E-08 72.6 0.4 42 175-219 22-65 (211)
395 2gj8_A MNME, tRNA modification 96.5 0.0023 7.9E-08 64.6 5.6 27 176-202 2-28 (172)
396 2qby_A CDC6 homolog 1, cell di 96.5 0.00075 2.6E-08 77.1 1.9 29 176-204 43-71 (386)
397 1lv7_A FTSH; alpha/beta domain 96.4 0.0075 2.6E-07 65.0 9.6 32 884-917 37-68 (257)
398 3qks_A DNA double-strand break 96.4 0.0015 5.1E-08 68.3 3.7 28 887-915 17-44 (203)
399 3cr8_A Sulfate adenylyltranfer 96.4 0.00049 1.7E-08 82.7 -0.1 42 890-933 365-408 (552)
400 3qks_A DNA double-strand break 96.4 0.0016 5.6E-08 67.9 3.9 29 170-199 16-44 (203)
401 3cf0_A Transitional endoplasmi 96.4 0.0033 1.1E-07 69.9 6.5 29 890-918 45-73 (301)
402 1m2o_B GTP-binding protein SAR 96.4 0.0022 7.6E-08 65.8 4.4 34 167-201 13-46 (190)
403 2qor_A Guanylate kinase; phosp 96.3 0.0011 3.9E-08 69.0 2.0 30 174-203 8-37 (204)
404 3lxx_A GTPase IMAP family memb 96.3 0.012 4.2E-07 62.6 10.2 42 1024-1065 111-154 (239)
405 3llm_A ATP-dependent RNA helic 96.3 0.0063 2.1E-07 64.9 7.8 66 1009-1076 162-228 (235)
406 1y63_A LMAJ004144AAA protein; 96.3 0.0016 5.6E-08 66.6 3.1 32 170-201 2-33 (184)
407 3llm_A ATP-dependent RNA helic 96.3 0.00042 1.4E-08 74.1 -1.6 66 326-394 163-229 (235)
408 1np6_A Molybdopterin-guanine d 96.3 0.0016 5.6E-08 66.2 2.8 40 179-218 7-46 (174)
409 2q6t_A DNAB replication FORK h 96.3 0.0096 3.3E-07 69.9 9.8 38 165-202 187-224 (444)
410 1m2o_B GTP-binding protein SAR 96.3 0.0034 1.2E-07 64.4 5.3 49 882-931 12-66 (190)
411 1f6b_A SAR1; gtpases, N-termin 96.2 0.0011 3.7E-08 68.7 1.3 35 166-201 14-48 (198)
412 2qag_A Septin-2, protein NEDD5 96.2 0.00055 1.9E-08 78.2 -1.3 77 165-250 30-106 (361)
413 1u94_A RECA protein, recombina 96.2 0.041 1.4E-06 62.4 14.0 30 173-202 58-87 (356)
414 2yvu_A Probable adenylyl-sulfa 96.1 0.0015 5.1E-08 66.9 1.5 30 176-205 11-40 (186)
415 2ffh_A Protein (FFH); SRP54, s 96.1 0.0017 5.8E-08 75.4 2.2 46 169-219 91-136 (425)
416 4eaq_A DTMP kinase, thymidylat 96.1 0.0026 9E-08 67.7 3.5 36 883-918 12-50 (229)
417 3lxx_A GTPase IMAP family memb 96.1 0.016 5.6E-07 61.7 9.7 26 180-205 31-56 (239)
418 2p5t_B PEZT; postsegregational 96.0 0.0016 5.6E-08 70.4 1.4 41 174-219 28-68 (253)
419 2ohf_A Protein OLA1, GTP-bindi 96.0 0.0029 1E-07 72.5 3.4 31 171-201 15-45 (396)
420 2www_A Methylmalonic aciduria 96.0 0.0016 5.4E-08 74.1 1.2 26 892-917 72-97 (349)
421 1mky_A Probable GTP-binding pr 96.0 0.0048 1.7E-07 72.4 5.3 38 896-933 182-229 (439)
422 3h4m_A Proteasome-activating n 96.0 0.0088 3E-07 65.5 7.2 28 891-918 48-75 (285)
423 3bgw_A DNAB-like replicative h 95.9 0.0072 2.5E-07 70.9 6.6 33 884-916 187-219 (444)
424 2p67_A LAO/AO transport system 95.9 0.001 3.5E-08 75.4 -0.7 36 882-917 44-79 (341)
425 2pez_A Bifunctional 3'-phospho 95.9 0.0038 1.3E-07 63.4 3.3 26 892-917 3-28 (179)
426 1j8m_F SRP54, signal recogniti 95.9 0.0012 4.2E-08 73.2 -0.5 46 169-218 89-135 (297)
427 2wji_A Ferrous iron transport 95.8 0.0075 2.5E-07 60.1 5.4 24 180-203 5-28 (165)
428 2q6t_A DNAB replication FORK h 95.8 0.012 4.1E-07 69.1 7.8 34 883-916 189-222 (444)
429 2ga8_A Hypothetical 39.9 kDa p 95.8 0.0009 3.1E-08 75.4 -1.9 37 167-203 11-49 (359)
430 1cke_A CK, MSSA, protein (cyti 95.8 0.004 1.4E-07 65.7 3.1 56 894-949 5-73 (227)
431 1l8q_A Chromosomal replication 95.8 0.0063 2.2E-07 68.2 4.8 27 177-203 36-62 (324)
432 3h4m_A Proteasome-activating n 95.7 0.015 5.1E-07 63.6 7.7 28 176-203 49-76 (285)
433 2qor_A Guanylate kinase; phosp 95.7 0.0044 1.5E-07 64.5 3.0 29 890-918 8-36 (204)
434 3ice_A Transcription terminati 95.7 0.0029 1E-07 71.6 1.8 33 170-202 166-198 (422)
435 1ega_A Protein (GTP-binding pr 95.7 0.004 1.4E-07 69.2 2.7 25 178-202 8-32 (301)
436 2if2_A Dephospho-COA kinase; a 95.7 0.0042 1.4E-07 64.4 2.7 21 180-200 3-23 (204)
437 2qag_A Septin-2, protein NEDD5 95.7 0.0024 8.1E-08 73.0 0.9 46 854-918 16-61 (361)
438 2wji_A Ferrous iron transport 95.7 0.01 3.6E-07 59.0 5.5 23 896-918 5-27 (165)
439 1u94_A RECA protein, recombina 95.7 0.16 5.6E-06 57.5 16.0 27 890-916 59-85 (356)
440 3m6a_A ATP-dependent protease 95.6 0.002 6.7E-08 77.8 0.1 48 883-933 98-145 (543)
441 1l8q_A Chromosomal replication 95.6 0.0089 3E-07 66.9 5.5 45 1023-1067 96-141 (324)
442 3cm0_A Adenylate kinase; ATP-b 95.6 0.0055 1.9E-07 62.4 3.4 27 176-202 2-28 (186)
443 1lv7_A FTSH; alpha/beta domain 95.6 0.0048 1.6E-07 66.6 3.1 45 167-218 36-80 (257)
444 1f6b_A SAR1; gtpases, N-termin 95.6 0.0022 7.4E-08 66.4 0.3 49 882-931 14-68 (198)
445 3lxw_A GTPase IMAP family memb 95.6 0.029 9.9E-07 60.2 9.2 23 896-918 23-45 (247)
446 2wjg_A FEOB, ferrous iron tran 95.6 0.006 2E-07 61.9 3.6 22 180-201 9-30 (188)
447 1y63_A LMAJ004144AAA protein; 95.6 0.0054 1.9E-07 62.7 3.2 32 886-917 2-33 (184)
448 2b8t_A Thymidine kinase; deoxy 95.6 0.011 3.9E-07 62.4 5.6 53 1025-1082 89-150 (223)
449 2wjg_A FEOB, ferrous iron tran 95.5 0.013 4.3E-07 59.5 5.7 22 896-917 9-30 (188)
450 2i1q_A DNA repair and recombin 95.5 0.04 1.4E-06 61.6 10.2 132 891-1065 95-257 (322)
451 1qhx_A CPT, protein (chloramph 95.5 0.0055 1.9E-07 61.9 2.8 26 178-203 3-28 (178)
452 3d8b_A Fidgetin-like protein 1 95.5 0.061 2.1E-06 61.1 11.9 27 176-202 115-141 (357)
453 3t61_A Gluconokinase; PSI-biol 95.4 0.0053 1.8E-07 63.7 2.5 25 178-202 18-42 (202)
454 2if2_A Dephospho-COA kinase; a 95.4 0.0063 2.2E-07 63.1 2.8 21 896-916 3-23 (204)
455 3kb2_A SPBC2 prophage-derived 95.4 0.0074 2.5E-07 60.4 3.2 24 180-203 3-26 (173)
456 3d8b_A Fidgetin-like protein 1 95.3 0.067 2.3E-06 60.8 11.3 26 892-917 115-140 (357)
457 2rhm_A Putative kinase; P-loop 95.3 0.0081 2.8E-07 61.4 3.2 27 176-202 3-29 (193)
458 1sxj_C Activator 1 40 kDa subu 95.2 0.0022 7.6E-08 72.5 -1.4 41 165-205 31-73 (340)
459 1kht_A Adenylate kinase; phosp 95.1 0.01 3.4E-07 60.5 3.4 27 177-203 2-28 (192)
460 2v1u_A Cell division control p 95.1 0.026 8.9E-07 64.2 7.2 26 892-917 42-67 (387)
461 2ohf_A Protein OLA1, GTP-bindi 95.1 0.0084 2.9E-07 68.8 2.9 43 889-931 17-68 (396)
462 1np6_A Molybdopterin-guanine d 95.1 0.0098 3.3E-07 60.4 3.1 38 895-932 7-45 (174)
463 1gvn_B Zeta; postsegregational 95.1 0.0093 3.2E-07 65.7 3.2 36 176-216 31-66 (287)
464 3cf0_A Transitional endoplasmi 95.0 0.0097 3.3E-07 66.0 3.2 38 174-216 45-82 (301)
465 2ze6_A Isopentenyl transferase 95.0 0.0082 2.8E-07 64.9 2.4 25 179-203 2-26 (253)
466 3r20_A Cytidylate kinase; stru 95.0 0.011 3.9E-07 62.8 3.3 24 179-202 10-33 (233)
467 2v54_A DTMP kinase, thymidylat 94.9 0.011 3.9E-07 60.9 3.2 27 176-202 2-28 (204)
468 3bgw_A DNAB-like replicative h 94.9 0.05 1.7E-06 63.7 9.0 38 165-202 184-221 (444)
469 2zej_A Dardarin, leucine-rich 94.9 0.012 4E-07 59.9 3.1 23 180-202 4-26 (184)
470 2yvu_A Probable adenylyl-sulfa 94.9 0.011 3.7E-07 60.4 2.9 29 889-917 8-36 (186)
471 3trf_A Shikimate kinase, SK; a 94.9 0.013 4.4E-07 59.6 3.4 26 177-202 4-29 (185)
472 3lw7_A Adenylate kinase relate 94.9 0.013 4.3E-07 58.6 3.2 19 180-198 3-21 (179)
473 1q3t_A Cytidylate kinase; nucl 94.9 0.012 4E-07 62.8 3.1 28 175-202 13-40 (236)
474 2plr_A DTMP kinase, probable t 94.8 0.015 5.2E-07 60.2 3.7 28 177-204 3-30 (213)
475 2zej_A Dardarin, leucine-rich 94.7 0.015 5E-07 59.1 3.4 22 896-917 4-25 (184)
476 1ly1_A Polynucleotide kinase; 94.7 0.015 5.2E-07 58.5 3.5 22 179-200 3-24 (181)
477 3iij_A Coilin-interacting nucl 94.7 0.013 4.4E-07 59.4 2.9 26 177-202 10-35 (180)
478 1ex7_A Guanylate kinase; subst 94.7 0.012 4.2E-07 60.3 2.7 24 180-203 3-26 (186)
479 1m7g_A Adenylylsulfate kinase; 94.7 0.012 4.1E-07 61.5 2.7 39 891-931 22-62 (211)
480 2ga8_A Hypothetical 39.9 kDa p 94.7 0.0031 1.1E-07 70.9 -2.0 35 883-917 11-47 (359)
481 1xjc_A MOBB protein homolog; s 94.7 0.011 3.9E-07 59.5 2.2 26 179-204 5-30 (169)
482 3t61_A Gluconokinase; PSI-biol 94.6 0.012 4.1E-07 60.9 2.5 24 894-917 18-41 (202)
483 2ffh_A Protein (FFH); SRP54, s 94.6 0.0072 2.5E-07 70.1 0.7 46 885-934 91-136 (425)
484 3cm0_A Adenylate kinase; ATP-b 94.6 0.017 5.7E-07 58.8 3.4 25 892-916 2-26 (186)
485 3cmw_A Protein RECA, recombina 94.6 0.035 1.2E-06 74.3 7.2 30 174-203 728-757 (1706)
486 2c95_A Adenylate kinase 1; tra 94.6 0.016 5.4E-07 59.4 3.1 27 176-202 7-33 (196)
487 2wwf_A Thymidilate kinase, put 94.6 0.017 5.8E-07 60.0 3.4 27 176-202 8-34 (212)
488 2jaq_A Deoxyguanosine kinase; 94.5 0.018 6.2E-07 59.3 3.3 24 180-203 2-25 (205)
489 1vht_A Dephospho-COA kinase; s 94.5 0.02 6.9E-07 59.9 3.7 24 177-200 3-26 (218)
490 1xwi_A SKD1 protein; VPS4B, AA 94.4 0.28 9.7E-06 54.7 13.3 119 892-1081 43-176 (322)
491 1tev_A UMP-CMP kinase; ploop, 94.4 0.021 7.3E-07 58.2 3.6 26 177-202 2-27 (196)
492 1via_A Shikimate kinase; struc 94.4 0.019 6.4E-07 58.0 3.1 23 180-202 6-28 (175)
493 1nn5_A Similar to deoxythymidy 94.3 0.019 6.6E-07 59.6 3.2 27 176-202 7-33 (215)
494 1gtv_A TMK, thymidylate kinase 94.3 0.0068 2.3E-07 63.2 -0.3 25 180-204 2-26 (214)
495 1aky_A Adenylate kinase; ATP:A 94.3 0.022 7.4E-07 59.8 3.5 27 176-202 2-28 (220)
496 1q57_A DNA primase/helicase; d 94.3 0.26 8.9E-06 58.6 13.3 33 884-916 232-264 (503)
497 2bwj_A Adenylate kinase 5; pho 94.3 0.0083 2.8E-07 61.7 0.2 27 176-202 10-36 (199)
498 1q3t_A Cytidylate kinase; nucl 94.3 0.019 6.7E-07 61.0 3.1 26 891-916 13-38 (236)
499 2qz4_A Paraplegin; AAA+, SPG7, 94.2 0.11 3.6E-06 55.8 8.9 123 888-1082 33-175 (262)
500 1nks_A Adenylate kinase; therm 94.2 0.022 7.6E-07 58.0 3.3 24 180-203 3-26 (194)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=5.5e-77 Score=787.22 Aligned_cols=217 Identities=26% Similarity=0.356 Sum_probs=183.5
Q ss_pred CCceeeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcC
Q 001293 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (1106)
Q Consensus 852 ~p~~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g 931 (1106)
..+.|+|+||+|+|+.. ++.++|+||||+|+|||++||||+||||||||+++|.|... +.+|+|.|||
T Consensus 1073 ~~g~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG 1140 (1321)
T 4f4c_A 1073 LYGKVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDG 1140 (1321)
T ss_dssp CCCCEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETT
T ss_pred CCCeEEEEEEEEeCCCC----------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc--CCCCEEEECC
Confidence 34679999999999642 23468999999999999999999999999999999999766 5689999999
Q ss_pred ccCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCcccc-------ccccC
Q 001293 932 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVG 1001 (1106)
Q Consensus 932 ~~~~~---~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~-------~~~~g 1001 (1106)
.|+.+ ..++++++||||++.++. .|++|||.|+. .+.+. .++.++++++..++.++. |..+|
T Consensus 1141 ~di~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gl---d~~~~----sd~ei~~Al~~a~l~~~I~~Lp~GldT~vg 1212 (1321)
T 4f4c_A 1141 SEIKTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGL---DPSSV----TMAQVEEAARLANIHNFIAELPEGFETRVG 1212 (1321)
T ss_dssp EETTTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSS---CTTTS----CHHHHHHHHHHTTCHHHHHTSTTTTCSEET
T ss_pred EEhhhCCHHHHHhheEEECCCCEeeC-ccHHHHHhccC---CCCCC----CHHHHHHHHHHhCChHHHHcCcCCCCCEec
Confidence 99765 457889999999999876 59999998762 11222 244588999999986653 34455
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeEEEE
Q 001293 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1106)
Q Consensus 1002 ~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l 1081 (1106)
.. +.+||||||||+||||||+++|+||+||||||+||+++.+.|++.|++.. +|||+|+++|+++ ....||+|+||
T Consensus 1213 e~-G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLs--Ti~~aD~I~Vl 1288 (1321)
T 4f4c_A 1213 DR-GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLN--TVMNADCIAVV 1288 (1321)
T ss_dssp TT-SCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSS--TTTTCSEEEEE
T ss_pred CC-CcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHH--HHHhCCEEEEE
Confidence 43 46899999999999999999999999999999999999999999999875 5899999999997 45779999999
Q ss_pred ecCCEEEEecCC
Q 001293 1082 KRGGQEIYVGPL 1093 (1106)
Q Consensus 1082 ~~Gg~~~~~g~~ 1093 (1106)
++ |+++++|+.
T Consensus 1289 d~-G~IvE~Gth 1299 (1321)
T 4f4c_A 1289 SN-GTIIEKGTH 1299 (1321)
T ss_dssp SS-SSEEEEECH
T ss_pred EC-CEEEEECCH
Confidence 86 699999984
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.5e-71 Score=733.81 Aligned_cols=216 Identities=25% Similarity=0.350 Sum_probs=176.9
Q ss_pred CceeeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCc
Q 001293 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (1106)
Q Consensus 853 p~~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 932 (1106)
.+.++|+||++.|+..+ +.++|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.
T Consensus 1028 ~g~i~~~~v~~~y~~~~----------~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~ 1095 (1284)
T 3g5u_A 1028 EGNVQFSGVVFNYPTRP----------SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGK 1095 (1284)
T ss_dssp SCCEEEEEEEBCCSCGG----------GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSS
T ss_pred CCcEEEEEEEEECCCCC----------CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCE
Confidence 45799999999996421 2358999999999999999999999999999999999876 56999999999
Q ss_pred cCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccc-------cccCC
Q 001293 933 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ-------SLVGL 1002 (1106)
Q Consensus 933 ~~~~---~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~-------~~~g~ 1002 (1106)
++.. ..+++.+|||||++.++ ..||+||+.++... ...+ ++.++++++..++.++.+ ..+|.
T Consensus 1096 ~i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~---~~~~----~~~i~~~~~~~~~~~~i~~l~~gldt~vge 1167 (1284)
T 3g5u_A 1096 EIKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNS---RVVS----YEEIVRAAKEANIHQFIDSLPDKYNTRVGD 1167 (1284)
T ss_dssp CTTSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSS---CCCC----HHHHHHHHHHHTCHHHHSSTTTGGGCBCST
T ss_pred EcccCCHHHHHhceEEECCCCccc-cccHHHHHhccCCC---CCCC----HHHHHHHHHHhCcHHHHHhCccccccccCC
Confidence 8754 34667899999999776 46999999875321 1122 233566677766654433 34444
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeEEEEe
Q 001293 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1106)
Q Consensus 1003 ~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1082 (1106)
. +.+||||||||++|||||+++|+||+|||||+|||+.+++.|++.|++. .+|+|||+++||++. + ..||+|++|+
T Consensus 1168 ~-G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~ 1243 (1284)
T 3g5u_A 1168 K-GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQ 1243 (1284)
T ss_dssp T-SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEE
T ss_pred C-CCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-HcCCEEEEEE
Confidence 3 4689999999999999999999999999999999999999999999886 458999999999984 4 6699999998
Q ss_pred cCCEEEEecCC
Q 001293 1083 RGGQEIYVGPL 1093 (1106)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1106)
+ |++++.|+.
T Consensus 1244 ~-G~i~~~g~~ 1253 (1284)
T 3g5u_A 1244 N-GKVKEHGTH 1253 (1284)
T ss_dssp T-BEEEEEECH
T ss_pred C-CEEEEECCH
Confidence 6 699999874
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=6.3e-58 Score=558.37 Aligned_cols=201 Identities=23% Similarity=0.291 Sum_probs=166.3
Q ss_pred eeeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccC
Q 001293 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1106)
Q Consensus 855 ~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1106)
.++++|+++.++ + ..|+++||+|++||++||+||||||||||+++|+|... +..|+|.+
T Consensus 357 ~l~~~~l~~~~~-------------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~----- 415 (607)
T 3bk7_A 357 LVEYPRLVKDYG-------------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEW----- 415 (607)
T ss_dssp EEEECCEEEECS-------------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBSCCCC-----
T ss_pred EEEEeceEEEec-------------c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEE-----
Confidence 477788876653 1 26899999999999999999999999999999999766 45788865
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 001293 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1106)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrq 1014 (1106)
.+.+||++|+....+.+||.|++.+...... ...+.++++++.+++.++.++.+ .+|||||||
T Consensus 416 -----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~Q 478 (607)
T 3bk7_A 416 -----DLTVAYKPQYIKAEYEGTVYELLSKIDSSKL-------NSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQ 478 (607)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------HCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHH
T ss_pred -----eeEEEEEecCccCCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 2358999999877778999998865311110 11245788999999988877764 579999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCccHHHHHhcCeEEEEec-CCEEEEecC
Q 001293 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGP 1092 (1106)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~-Gg~~~~~g~ 1092 (1106)
||+|||+|+.+|+||||||||+|||+.++..+++.|++++ +.|.|||+++||++ .+...||++++|++ .|+++..|+
T Consensus 479 Rv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~ 557 (607)
T 3bk7_A 479 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALP 557 (607)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCC
Confidence 9999999999999999999999999999999999999986 46899999999987 57788999999984 267777787
Q ss_pred CC
Q 001293 1093 LG 1094 (1106)
Q Consensus 1093 ~g 1094 (1106)
..
T Consensus 558 p~ 559 (607)
T 3bk7_A 558 PM 559 (607)
T ss_dssp CE
T ss_pred HH
Confidence 63
No 4
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=5.3e-58 Score=554.02 Aligned_cols=201 Identities=24% Similarity=0.287 Sum_probs=165.2
Q ss_pred eeeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccC
Q 001293 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1106)
Q Consensus 855 ~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1106)
.+.++|+++.|+ + ..|+++||+|++||++||+||||||||||+++|+|... +..|+|.+
T Consensus 287 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~----- 345 (538)
T 1yqt_A 287 LVTYPRLVKDYG-------------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEW----- 345 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBCCCCC-----
T ss_pred EEEEeeEEEEEC-------------C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEE-----
Confidence 467778876553 1 36899999999999999999999999999999999765 45788875
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 001293 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1106)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrq 1014 (1106)
...+||++|+....+.+||.|++........ . ..+.++++++.+++.+..++.+ ..|||||||
T Consensus 346 -----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-~------~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~q 408 (538)
T 1yqt_A 346 -----DLTVAYKPQYIKADYEGTVYELLSKIDASKL-N------SNFYKTELLKPLGIIDLYDREV-----NELSGGELQ 408 (538)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-T------CHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHH
T ss_pred -----CceEEEEecCCcCCCCCcHHHHHHhhhccCC-C------HHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHH
Confidence 2358999999877778999888765311110 0 1234678899999987777663 579999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCccHHHHHhcCeEEEEec-CCEEEEecC
Q 001293 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGP 1092 (1106)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~-Gg~~~~~g~ 1092 (1106)
||+|||+|+.+|++|||||||+|||+.++..|++.|++++ +.|.|||++|||++ ++...||++++|++ .|+++..|+
T Consensus 409 rv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~ 487 (538)
T 1yqt_A 409 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALP 487 (538)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCC
Confidence 9999999999999999999999999999999999999986 45899999999987 57889999999985 267777887
Q ss_pred CC
Q 001293 1093 LG 1094 (1106)
Q Consensus 1093 ~g 1094 (1106)
..
T Consensus 488 ~~ 489 (538)
T 1yqt_A 488 PM 489 (538)
T ss_dssp CE
T ss_pred HH
Confidence 64
No 5
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.5e-56 Score=561.66 Aligned_cols=184 Identities=22% Similarity=0.276 Sum_probs=148.1
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCC-CCCCCCCH
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHD-NHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 243 (1106)
+.+|+|+|+.+++|++++|+|||||||||||++|+| |+| +|.+... ...++|++|+. .+++.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBH
T ss_pred EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc---ceeEEEEcccccccccCCcH
Confidence 359999999999999999999999999999999995 222 3333211 12478999974 67889999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc-ccccccccccccc
Q 001293 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGDEMIR 322 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~ 322 (1106)
.|++.+ ...+ . ...++.+|+.+||+ +..+..++
T Consensus 514 ~e~l~~--~~~~--~-------------------------------------~~~v~~~L~~lgL~~~~~~~~~~----- 547 (986)
T 2iw3_A 514 LDFVFE--SGVG--T-------------------------------------KEAIKDKLIEFGFTDEMIAMPIS----- 547 (986)
T ss_dssp HHHHHT--TCSS--C-------------------------------------HHHHHHHHHHTTCCHHHHHSBGG-----
T ss_pred HHHHHH--hhcC--H-------------------------------------HHHHHHHHHHcCCChhhhcCCcc-----
Confidence 999975 1111 0 01346678899994 55665554
Q ss_pred CCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 001293 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1106)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~ 402 (1106)
.|||||||||+||++|+.+|++|||||||+|||+.++.++.+.|++ . +++||.++|+..++.++||+|++|++|+
T Consensus 548 ~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~-g~tvIivSHdl~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 548 ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----C-GITSITISHDSVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----S-CSEEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----C-CCEEEEEECCHHHHHHhCCEEEEEECCe
Confidence 6999999999999999999999999999999999999999999986 3 4455668899999999999999999999
Q ss_pred EE-EEcChHHHH
Q 001293 403 IV-YQGPRELVL 413 (1106)
Q Consensus 403 iv-~~G~~~~~~ 413 (1106)
++ +.|+.+++.
T Consensus 623 iv~~~G~~~e~~ 634 (986)
T 2iw3_A 623 LRKYKGNFTEFV 634 (986)
T ss_dssp EEEEESCHHHHH
T ss_pred eecCCCCHHHHH
Confidence 96 789887653
No 6
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.7e-56 Score=539.19 Aligned_cols=192 Identities=22% Similarity=0.268 Sum_probs=159.0
Q ss_pred eeeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccC
Q 001293 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1106)
Q Consensus 855 ~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1106)
.+.+++++..++ + ..|+++|++|++||++||+||||||||||+++|+|... +..|+|.+++.
T Consensus 269 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~~-- 330 (538)
T 3ozx_A 269 KMKWTKIIKKLG-------------D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEKQ-- 330 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSCC--
T ss_pred eEEEcceEEEEC-------------C-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCe--
Confidence 466677765543 1 35788899999999999999999999999999999876 46899987642
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 001293 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1106)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrq 1014 (1106)
.++|++|+.......||+|++.+... ..... ....++++++.+++.+..++.+ .+|||||||
T Consensus 331 -------~i~~~~q~~~~~~~~tv~~~l~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~Q 392 (538)
T 3ozx_A 331 -------ILSYKPQRIFPNYDGTVQQYLENASK--DALST----SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQ 392 (538)
T ss_dssp -------CEEEECSSCCCCCSSBHHHHHHHHCS--STTCT----TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHH
T ss_pred -------eeEeechhcccccCCCHHHHHHHhhh--hccch----hHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHH
Confidence 47999998776678899999987421 11111 1234678899999988877764 579999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhcCeEEEEec
Q 001293 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1106)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1083 (1106)
||+|||||+.+|+||||||||+|||+.++..|++.|+++++ .|.|||++|||++ ++...||++++|++
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~ 461 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKG 461 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeC
Confidence 99999999999999999999999999999999999999864 5899999999987 57889999999985
No 7
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=2e-55 Score=548.54 Aligned_cols=214 Identities=22% Similarity=0.290 Sum_probs=135.6
Q ss_pred cceeeeceeEEEeCCeEEEEEcCCCCcHHHHH---------------------HHHhCCCCCCCC----ceeEEEEcCcc
Q 001293 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLL---------------------LALAGKLDPTLK----VSGTVTYNGHD 218 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL---------------------~~L~G~~~~~~~----~~G~V~~~G~~ 218 (1106)
+.++|+|||++|++||+++|+||||||||||| +++.|...|+.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 34589999999999999999999999999998 888888777521 24677777765
Q ss_pred CCCCcccceEEEEcCCCC-------------------CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCC
Q 001293 219 MDEFVPQRTAAYISQHDN-------------------HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279 (1106)
Q Consensus 219 ~~~~~~~~~~~yv~Q~d~-------------------~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (1106)
.... +++.++||+|... .++.+||+||+.+.......... .+..+. .
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~----~~~~~~-~-------- 175 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKE----AQIARL-I-------- 175 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred hhcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhh----hHHHHH-H--------
Confidence 4332 2345566665432 24678999999874322100000 000000 0
Q ss_pred ChHHHHHHHhhhhhhHHHHHHHHHHHcCCccc-cccccccccccCCChhhhHHHHHHHHHhcCCc--cceeecCCCCCCH
Q 001293 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDS 356 (1106)
Q Consensus 280 d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~--vllLDEptsgLD~ 356 (1106)
..+.... ..+++.+||.+. .|..+ ..|||||||||+|||||+.+|+ +|||||||+|||+
T Consensus 176 ------------~~~~~~~-~~~l~~~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 176 ------------LREIRDR-LGFLQNVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CHHH-HHHHHHTTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred ------------HHHHHHH-HHHHHHcCCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCH
Confidence 0000111 235888999764 45444 4699999999999999999988 9999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEE------cCCeEEEEcChHHH
Q 001293 357 STTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELV 412 (1106)
Q Consensus 357 ~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL------~~G~iv~~G~~~~~ 412 (1106)
.++.++++.|+++.. . +.+||.++|+... ...||+|++| ++|++++.|+++++
T Consensus 238 ~~~~~l~~~l~~l~~-~-g~tvi~vtHd~~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 238 RDNDRLIATLKSMRD-L-GNTLIVVEHDEDT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEV 296 (670)
T ss_dssp GGHHHHHHHHHHHHH-T-TCEEEEECCCHHH-HHHCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHH-c-CCEEEEEeCCHHH-HhhCCEEEEecccccccCCEEEEecCHHHH
Confidence 999999999999854 3 4555667888775 4569999999 89999999998875
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-55 Score=531.58 Aligned_cols=188 Identities=19% Similarity=0.182 Sum_probs=154.4
Q ss_pred EEeeeeEEEEeCC-----eEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcccccceEEEEccCCCCCCCC
Q 001293 882 VLLNGVSGAFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFV 956 (1106)
Q Consensus 882 ~~L~~is~~v~~G-----~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~ 956 (1106)
.+++|+||++++| |++||+||||||||||+++|+|... +..|+. .. ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~--p~~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK--PDEGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC--CSBCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC--CCCCcC------cc----CCcEEEecccccccCCc
Confidence 4788999999888 7899999999999999999999876 345642 11 23589999987766667
Q ss_pred CHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC
Q 001293 957 TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1036 (1106)
Q Consensus 957 tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPts 1036 (1106)
||+|++... .+.. ... ...++++++.+++.++.+.. +.+|||||||||+|||||+.+|+||||||||+
T Consensus 429 tv~e~~~~~--~~~~--~~~---~~~~~~~l~~l~l~~~~~~~-----~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRGQ--FLN---PQFQTDVVKPLRIDDIIDQE-----VQHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSST--TTS---HHHHHHTHHHHTSTTTSSSB-----SSSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHH--hhcc--ccc---HHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 999987532 2211 111 23467899999999888876 45799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCCeEEEEecCccHHHHHhcCeEEEEecC-CEEEEecCCC
Q 001293 1037 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG-GQEIYVGPLG 1094 (1106)
Q Consensus 1037 gLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~G-g~~~~~g~~g 1094 (1106)
|||+.++..+++.|+++. +.|.|||++|||++ ++...||++++|+++ |+++..|+..
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~ 555 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPE 555 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCE
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChH
Confidence 999999999999999985 45999999999987 578889999999852 7888888753
No 9
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.9e-42 Score=393.37 Aligned_cols=223 Identities=22% Similarity=0.325 Sum_probs=191.8
Q ss_pred eEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHHHhhhcCCccccceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHH
Q 001293 118 EVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLA 197 (1106)
Q Consensus 118 ~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~ 197 (1106)
-++++||++.+.. ++...++|+|||++|++||+++|+|||||||||||++
T Consensus 24 mi~v~~ls~~y~~------------------------------~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~ 73 (366)
T 3tui_C 24 MIKLSNITKVFHQ------------------------------GTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRC 73 (366)
T ss_dssp CEEEEEEEEEEEC------------------------------SSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHH
T ss_pred eEEEEeEEEEeCC------------------------------CCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHH
Confidence 4899999998842 1233569999999999999999999999999999999
Q ss_pred HhCCCCCCCCceeEEEEcCccCCCCcc------cceEEEEcCCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHH
Q 001293 198 LAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREK 271 (1106)
Q Consensus 198 L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~ 271 (1106)
|+|+++|+ +|+|.++|.++..... ++.+|||+|++.+++.+||+||+.|+.+..+...
T Consensus 74 i~GL~~p~---~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~------------- 137 (366)
T 3tui_C 74 VNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPK------------- 137 (366)
T ss_dssp HHTSSCCS---EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCH-------------
T ss_pred HhcCCCCC---ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCH-------------
Confidence 99999998 9999999999876542 3579999999999999999999999876543211
Q ss_pred hcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCCChhhhHHHHHHHHHhcCCccceeecCC
Q 001293 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIS 351 (1106)
Q Consensus 272 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEpt 351 (1106)
.+.+.+++++|+.+||.+.++..+ ..|||||||||+|||||+.+|++|||||||
T Consensus 138 ---------------------~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGGqkQRVaIArAL~~~P~lLLlDEPT 191 (366)
T 3tui_C 138 ---------------------DEVKRRVTELLSLVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDQAT 191 (366)
T ss_dssp ---------------------HHHHHHHHHHHHHHTCGGGTTCCT-----TTSCHHHHHHHHHHHHTTTCCSEEEEESTT
T ss_pred ---------------------HHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 011235678899999998777554 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEEcChHHHH
Q 001293 352 TGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 352 sgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~ 413 (1106)
||||+.++..|++.|+++.+.. +.+|+.++|+..++.++||+|++|++|++++.|+++++.
T Consensus 192 s~LD~~~~~~i~~lL~~l~~~~-g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 192 SALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 252 (366)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHS-CCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999986543 455566889999999999999999999999999999874
No 10
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=2.9e-42 Score=391.81 Aligned_cols=218 Identities=22% Similarity=0.277 Sum_probs=190.1
Q ss_pred eeeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccC
Q 001293 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1106)
Q Consensus 855 ~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1106)
.+.++||++.|+.. .+...+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 24 mi~v~~ls~~y~~~---------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i 92 (366)
T 3tui_C 24 MIKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQEL 92 (366)
T ss_dssp CEEEEEEEEEEECS---------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEeEEEEeCCC---------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 58999999888531 123579999999999999999999999999999999999876 5689999999986
Q ss_pred Ccc------cccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCC
Q 001293 935 KQE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 1008 (1106)
Q Consensus 935 ~~~------~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~L 1008 (1106)
... ..++.+||++|++.+++.+||+||+.|+...+. .+.++.++.++++++.++|.+..++. +.+|
T Consensus 93 ~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~---~~~~~~~~~v~~lL~~vgL~~~~~~~-----~~~L 164 (366)
T 3tui_C 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSY-----PSNL 164 (366)
T ss_dssp SSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHHTCGGGTTCC-----TTTS
T ss_pred CcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhcCC-----hhhC
Confidence 532 235679999999999999999999999876542 34556667899999999999888776 4579
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhcCeEEEEecCCEE
Q 001293 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1106)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~ 1087 (1106)
||||||||+|||||+.+|+||||||||||||+.++..|++.|+++.+ .|.|||++|||++ .+.+.||++++|++ |++
T Consensus 165 SGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~-G~i 242 (366)
T 3tui_C 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GEL 242 (366)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999864 4999999999987 57889999999986 699
Q ss_pred EEecCC
Q 001293 1088 IYVGPL 1093 (1106)
Q Consensus 1088 ~~~g~~ 1093 (1106)
++.|+.
T Consensus 243 v~~g~~ 248 (366)
T 3tui_C 243 IEQDTV 248 (366)
T ss_dssp EECCBH
T ss_pred EEEcCH
Confidence 999975
No 11
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=6.9e-42 Score=391.28 Aligned_cols=207 Identities=24% Similarity=0.355 Sum_probs=181.1
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcc-cceEEEEcCCCCCCCCCCH
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1106)
.++|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.+|||+|++.++|.+||
T Consensus 16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV 92 (381)
T 3rlf_A 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 92 (381)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCH
T ss_pred EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCH
Confidence 35999999999999999999999999999999999999998 9999999999876554 3679999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccC
Q 001293 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1106)
+||+.|+.+..+... .+.+.+++++++.+||++..+..+ .+
T Consensus 93 ~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~p-----~~ 133 (381)
T 3rlf_A 93 AENMSFGLKLAGAKK----------------------------------EVINQRVNQVAEVLQLAHLLDRKP-----KA 133 (381)
T ss_dssp HHHHTHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTCCG-----GG
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCh-----hH
Confidence 999999876653211 112235678899999998777554 56
Q ss_pred CChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001293 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~i 403 (1106)
|||||||||+|||||+.+|++||||||||+||+..+.++.+.|+++.+..+ +++|.++|+..++..+||+|++|++|++
T Consensus 134 LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g-~tii~vTHd~~ea~~~aDri~vl~~G~i 212 (381)
T 3rlf_A 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG-RTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (381)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC-CEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCC-CEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999865444 4555689999999999999999999999
Q ss_pred EEEcChHHHHH
Q 001293 404 VYQGPRELVLE 414 (1106)
Q Consensus 404 v~~G~~~~~~~ 414 (1106)
+..|+++++..
T Consensus 213 ~~~g~~~~l~~ 223 (381)
T 3rlf_A 213 AQVGKPLELYH 223 (381)
T ss_dssp EEEECHHHHHH
T ss_pred EEEeCHHHHHh
Confidence 99999998853
No 12
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=5.8e-42 Score=389.48 Aligned_cols=207 Identities=23% Similarity=0.366 Sum_probs=178.2
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccC----CCCcc-cceEEEEcCCCCCCC
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM----DEFVP-QRTAAYISQHDNHIG 239 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~----~~~~~-~~~~~yv~Q~d~~~~ 239 (1106)
.++|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++ ....+ ++.+|||+|+..+++
T Consensus 17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p 93 (359)
T 3fvq_A 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFP 93 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccccchhhCCEEEEeCCCcCCC
Confidence 35999999999999999999999999999999999999998 99999999987 22222 467999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccc
Q 001293 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1106)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1106)
.+||+||+.|+.+..+... .+.+.+++++++.+||++..|..+
T Consensus 94 ~ltV~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~r~~--- 136 (359)
T 3fvq_A 94 HLTVYRNIAYGLGNGKGRT----------------------------------AQERQRIEAMLELTGISELAGRYP--- 136 (359)
T ss_dssp TSCHHHHHHTTSTTSSCCS----------------------------------HHHHHHHHHHHHHHTCGGGTTSCG---
T ss_pred CCCHHHHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCCchHhcCCh---
Confidence 9999999999865443211 011234678899999998777554
Q ss_pred cccCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEc
Q 001293 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1106)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~ 399 (1106)
.+|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+.. ++++|.++|+..++..+||+|++|+
T Consensus 137 --~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~-g~tvi~vTHd~~ea~~~aDri~vl~ 213 (359)
T 3fvq_A 137 --HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRAN-GKSAVFVSHDREEALQYADRIAVMK 213 (359)
T ss_dssp --GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHHHHHCSEEEEEE
T ss_pred --hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHCCEEEEEE
Confidence 4699999999999999999999999999999999999999999888776543 5556668999999999999999999
Q ss_pred CCeEEEEcChHHHHH
Q 001293 400 DGQIVYQGPRELVLE 414 (1106)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1106)
+|+++..|+++++..
T Consensus 214 ~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 214 QGRILQTASPHELYR 228 (359)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEEeCHHHHHh
Confidence 999999999998753
No 13
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=5.8e-42 Score=371.54 Aligned_cols=220 Identities=23% Similarity=0.340 Sum_probs=184.3
Q ss_pred eeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCC
Q 001293 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1106)
Q Consensus 856 l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1106)
+.++||+++|+.. .....+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~~~---------~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 70 (235)
T 3tif_A 2 VKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeCCC---------CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcc
Confidence 5678998887521 012469999999999999999999999999999999999876 56999999998764
Q ss_pred ccc-------ccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCcccc-ccccCCCCCCC
Q 001293 936 QET-------FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-QSLVGLPGVSG 1007 (1106)
Q Consensus 936 ~~~-------~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~-~~~~g~~g~~~ 1007 (1106)
... .++.+||++|++.+++.+||+||+.++...+.......+...+.+.++++.+++.+.. +.. +.+
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~ 145 (235)
T 3tif_A 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-----PNQ 145 (235)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-----GGG
T ss_pred cCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCC-----hhh
Confidence 321 1346999999999999999999999986554322344555667788999999997743 554 357
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhcCeEEEEecCCE
Q 001293 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1106)
Q Consensus 1008 LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1086 (1106)
||||||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++|||++ +.+.||++++|++ |+
T Consensus 146 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~-G~ 222 (235)
T 3tif_A 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (235)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999755 999999999985 4588999999986 68
Q ss_pred EEEecCCC
Q 001293 1087 EIYVGPLG 1094 (1106)
Q Consensus 1087 ~~~~g~~g 1094 (1106)
++..|+..
T Consensus 223 i~~~~~~~ 230 (235)
T 3tif_A 223 VEREEKLR 230 (235)
T ss_dssp EEEEEECC
T ss_pred EEEEcChh
Confidence 88888754
No 14
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.9e-41 Score=423.89 Aligned_cols=197 Identities=26% Similarity=0.397 Sum_probs=145.5
Q ss_pred EeeeeEEEEeCCeEEEEEcCCCCcHHHHH---------HHHhCCCC--C--Ceeee------EEEEcCccCCccc-----
Q 001293 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLM---------DVLAGRKT--G--GYITG------NITISGYPKKQET----- 938 (1106)
Q Consensus 883 ~L~~is~~v~~G~~~al~G~nGaGKSTLl---------~~L~g~~~--~--~~~~G------~i~i~g~~~~~~~----- 938 (1106)
.|+|||++|++|+++||+|+||||||||+ +.+.+... + ....| .+.++..++....
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccccc
Confidence 48999999999999999999999999997 44444221 1 12223 3455544321100
Q ss_pred ---------------------------------------ccceEEEEccCCCCCC-------------------------
Q 001293 939 ---------------------------------------FARISGYCEQNDIHSP------------------------- 954 (1106)
Q Consensus 939 ---------------------------------------~~~~~gyv~q~~~~~~------------------------- 954 (1106)
..+..||+.++..+.+
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred chhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhcc
Confidence 0012467777655544
Q ss_pred -------CCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCC-
Q 001293 955 -------FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP- 1026 (1106)
Q Consensus 955 -------~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p- 1026 (1106)
.+||.|++.|... . .....+.++|+.++|.... .+.+ +.+|||||||||+|||||+++|
T Consensus 759 ~~i~~vl~~tv~eal~f~~~------~---~~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~p~ 825 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKN------I---PSIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKRDT 825 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTT------C---HHHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSCCC
T ss_pred CCHHHHhhCCHHHHHHHHhc------c---hhHHHHHHHHHHcCCchhh---ccCC-ccCCCHHHHHHHHHHHHHhhCCC
Confidence 3678888876431 1 1223467889999996532 1222 3579999999999999999876
Q ss_pred --CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeEEEEe-----cCCEEEEecCCC
Q 001293 1027 --SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLG 1094 (1106)
Q Consensus 1027 --~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-----~Gg~~~~~g~~g 1094 (1106)
+||||||||+|||+.+.+.|++.|++++++|.|||+++||++ +...||+|++|. +||++++.|+..
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtpe 898 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTPE 898 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCHH
Confidence 799999999999999999999999999888999999999985 456799999994 578999999853
No 15
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=7.2e-42 Score=377.97 Aligned_cols=216 Identities=25% Similarity=0.380 Sum_probs=185.7
Q ss_pred eeeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccC
Q 001293 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1106)
Q Consensus 855 ~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1106)
.+.++||+++|+ +...+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 7 ~l~i~~ls~~y~------------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYS------------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECT------------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC------------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEEC
Confidence 478999998884 22359999999999999999999999999999999999876 4689999999887
Q ss_pred C--c---ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCC
Q 001293 935 K--Q---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 1008 (1106)
Q Consensus 935 ~--~---~~~~~~~gyv~q~~~-~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~L 1008 (1106)
. . ..+++.+||++|++. .+..+||+||+.|+...+ ..+.++.++.++++++.++|.++.+..+ .+|
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 144 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPT-----HCL 144 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBG-----GGS
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccC
Confidence 3 1 235678999999873 334689999999986543 2345556677899999999998888764 579
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCccHHHHHhcCeEEEEecCCEE
Q 001293 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1106)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~ 1087 (1106)
||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++. ++|+|||++|||++ .+.+.||++++|++ |++
T Consensus 145 SgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~-G~i 222 (275)
T 3gfo_A 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRV 222 (275)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999987 55999999999998 47788999999986 699
Q ss_pred EEecCCC
Q 001293 1088 IYVGPLG 1094 (1106)
Q Consensus 1088 ~~~g~~g 1094 (1106)
++.|+..
T Consensus 223 ~~~g~~~ 229 (275)
T 3gfo_A 223 ILQGNPK 229 (275)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9999853
No 16
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.8e-41 Score=387.81 Aligned_cols=213 Identities=25% Similarity=0.372 Sum_probs=188.9
Q ss_pred eeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCC
Q 001293 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1106)
Q Consensus 856 l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1106)
+.++||+++|. +..+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~yg-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~~ 68 (381)
T 3rlf_A 4 VQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMN 68 (381)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEECC
Confidence 77889988774 3579999999999999999999999999999999999876 56999999998865
Q ss_pred cc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 001293 936 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1106)
Q Consensus 936 ~~-~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrq 1014 (1106)
.. ..+|.+|||+|++.++|.+||+||+.|+...+. .+.++.++.++++++.++|.++.++.+ .+|||||||
T Consensus 69 ~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~p-----~~LSGGqrQ 140 (381)
T 3rlf_A 69 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQ 140 (381)
T ss_dssp TCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTT---CCHHHHHHHHHHHHHHTTCGGGTTCCG-----GGSCHHHHH
T ss_pred CCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hHCCHHHHH
Confidence 42 345679999999999999999999999876543 345666778999999999999888764 579999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhcCeEEEEecCCEEEEecCC
Q 001293 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1106)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~~~g~~ 1093 (1106)
||+|||||+.+|+|||||||||+||+..+..+++.|+++.++ |.|||++|||++ ++...||++++|++ |+++..|+.
T Consensus 141 RVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~~ 218 (381)
T 3rlf_A 141 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKP 218 (381)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEeCH
Confidence 999999999999999999999999999999999999998654 999999999987 68899999999986 699998875
No 17
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2e-41 Score=364.80 Aligned_cols=211 Identities=22% Similarity=0.273 Sum_probs=181.6
Q ss_pred eeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCC
Q 001293 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1106)
Q Consensus 856 l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1106)
+.++|+++.|+ +..+|+||||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 5 l~~~~l~~~y~-------------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (224)
T 2pcj_A 5 LRAENIKKVIR-------------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEVD 69 (224)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEeEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 77899988774 2469999999999999999999999999999999999876 46899999998764
Q ss_pred cc------ccc-ceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCC
Q 001293 936 QE------TFA-RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 1008 (1106)
Q Consensus 936 ~~------~~~-~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~L 1008 (1106)
.. .++ +.+||++|++.+++.+||+||+.++...+. ...+..++.++++++.++|.+..+..+ .+|
T Consensus 70 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 141 (224)
T 2pcj_A 70 YTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMG---KPKKEAKERGEYLLSELGLGDKLSRKP-----YEL 141 (224)
T ss_dssp SSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGS
T ss_pred CCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhC
Confidence 31 122 579999999999999999999998765432 233444567889999999988877663 579
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeEEEEecCCEEE
Q 001293 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1106)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~ 1088 (1106)
|||||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++|||++ .+ +.||++++|++ |+++
T Consensus 142 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~v~~l~~-G~i~ 218 (224)
T 2pcj_A 142 SGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LA-ELTHRTLEMKD-GKVV 218 (224)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HH-TTSSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HH-HhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999999877999999999976 34 88999999986 6899
Q ss_pred EecC
Q 001293 1089 YVGP 1092 (1106)
Q Consensus 1089 ~~g~ 1092 (1106)
+.|+
T Consensus 219 ~~g~ 222 (224)
T 2pcj_A 219 GEIT 222 (224)
T ss_dssp EEEE
T ss_pred EEee
Confidence 8886
No 18
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.5e-41 Score=371.51 Aligned_cols=215 Identities=25% Similarity=0.345 Sum_probs=184.5
Q ss_pred eeeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccC
Q 001293 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1106)
Q Consensus 855 ~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1106)
.++++|+++.|+ +..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 24 ~l~i~~l~~~y~-------------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i 88 (263)
T 2olj_A 24 MIDVHQLKKSFG-------------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINL 88 (263)
T ss_dssp SEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEES
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEC
Confidence 378999998873 2469999999999999999999999999999999999876 4689999999876
Q ss_pred C--c---ccccceEEEEccCCCCCCCCCHHHHHHHHH-hhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCC
Q 001293 935 K--Q---ETFARISGYCEQNDIHSPFVTIYESLLFSA-WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 1008 (1106)
Q Consensus 935 ~--~---~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~-~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~L 1008 (1106)
. . ..+++.+||++|++.+++.+||+||+.|+. ..+ ....+..++.++++++.++|.++.+..+ .+|
T Consensus 89 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 160 (263)
T 2olj_A 89 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYP-----DSL 160 (263)
T ss_dssp SSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred CCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCh-----hhC
Confidence 3 1 124567999999999899999999999864 222 1233444567889999999988877663 579
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeEEEEecCCEEE
Q 001293 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1106)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~ 1088 (1106)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++|||++ ++.+.||++++|++ |+++
T Consensus 161 SgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~ 238 (263)
T 2olj_A 161 SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDG-GYII 238 (263)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999999877999999999987 57778999999986 6888
Q ss_pred EecCCC
Q 001293 1089 YVGPLG 1094 (1106)
Q Consensus 1089 ~~g~~g 1094 (1106)
+.|+..
T Consensus 239 ~~g~~~ 244 (263)
T 2olj_A 239 EEGKPE 244 (263)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 888753
No 19
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=3e-41 Score=365.92 Aligned_cols=207 Identities=23% Similarity=0.274 Sum_probs=170.2
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCccc-------ceEEEEcCCCCC
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-------RTAAYISQHDNH 237 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~-------~~~~yv~Q~d~~ 237 (1106)
.++|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++...... +.+|||+|++.+
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l 94 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCC
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCcc
Confidence 46999999999999999999999999999999999999998 99999999988765432 359999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccc-cccc
Q 001293 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA-DTMV 316 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-dt~v 316 (1106)
++.+||+||+.++......+... ..+....+.++++.+||.+.. +..
T Consensus 95 ~~~~tv~enl~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~- 142 (235)
T 3tif_A 95 IPLLTALENVELPLIFKYRGAMS-------------------------------GEERRKRALECLKMAELEERFANHK- 142 (235)
T ss_dssp CTTSCHHHHHHHHHHTCSSSCCC-------------------------------HHHHHHHHHHHHHHTTCCGGGTTCC-
T ss_pred CCCCcHHHHHHHHHHhhhccCCC-------------------------------HHHHHHHHHHHHHHCCCChhhhhCC-
Confidence 99999999999986543111000 001123456788999997643 544
Q ss_pred ccccccCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEE
Q 001293 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1106)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ii 396 (1106)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+..+.|+ |.++|+.. ..++||+|+
T Consensus 143 ----~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tv-i~vtHd~~-~~~~~d~i~ 216 (235)
T 3tif_A 143 ----PNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTV-VVVTHDIN-VARFGERII 216 (235)
T ss_dssp ----GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEE-EEECSCHH-HHTTSSEEE
T ss_pred ----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEE-EEEcCCHH-HHHhCCEEE
Confidence 456999999999999999999999999999999999999999999999865435554 45677766 568999999
Q ss_pred EEcCCeEEEEcChHHH
Q 001293 397 LLSDGQIVYQGPRELV 412 (1106)
Q Consensus 397 lL~~G~iv~~G~~~~~ 412 (1106)
+|++|+++..|+.+++
T Consensus 217 ~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 217 YLKDGEVEREEKLRGF 232 (235)
T ss_dssp EEETTEEEEEEECC--
T ss_pred EEECCEEEEEcChhhh
Confidence 9999999999988764
No 20
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=2.3e-42 Score=386.68 Aligned_cols=257 Identities=21% Similarity=0.320 Sum_probs=193.5
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHHHhhh
Q 001293 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1106)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1106)
.|...+.++|+.++++..++ ..+.......+.+...|+|+||++.+.
T Consensus 18 ~~~~~~~~~ri~~~l~~~~~-----~~~~~~~~~~~~~~~~i~~~~vs~~y~---------------------------- 64 (306)
T 3nh6_A 18 GSHMFIDMENMFDLLKEETE-----VKDLPGAGPLRFQKGRIEFENVHFSYA---------------------------- 64 (306)
T ss_dssp -CCTTCCHHHHHHHHHHHHS-----CCCCTTCBCCCCSSCCEEEEEEEEESS----------------------------
T ss_pred HHHHHHHHHHHHHHHhCCcc-----ccccccccccCCCCCeEEEEEEEEEcC----------------------------
Confidence 45566677888777654433 111111122223356799999998862
Q ss_pred cCCccccceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcc---cceEEEEcCC
Q 001293 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1106)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~ 234 (1106)
...++|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++||+|+
T Consensus 65 -----~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~ 136 (306)
T 3nh6_A 65 -----DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQD 136 (306)
T ss_dssp -----TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSS
T ss_pred -----CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecC
Confidence 1135999999999999999999999999999999999999998 9999999999877643 4679999998
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccc
Q 001293 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1106)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1106)
+.+| ..||+|||.|+.... ..+...++.+. .+ ....++ .++...+|
T Consensus 137 ~~lf-~~Tv~eNi~~~~~~~----~~~~~~~~~~~---~~------------------------l~~~i~--~lp~gl~t 182 (306)
T 3nh6_A 137 TVLF-NDTIADNIRYGRVTA----GNDEVEAAAQA---AG------------------------IHDAIM--AFPEGYRT 182 (306)
T ss_dssp CCCC-SEEHHHHHHTTSTTC----CHHHHHHHHHH---HT------------------------CHHHHH--HSTTGGGC
T ss_pred CccC-cccHHHHHHhhcccC----CHHHHHHHHHH---hC------------------------cHHHHH--hccchhhh
Confidence 8766 569999999874221 11111111111 00 011111 35567789
Q ss_pred ccccccccCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001293 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1106)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1106)
.+|+.+ ..|||||||||+|||||+.+|+|||||||||+||+.++..|++.|+++. .++|+ |.++|+...+.. ||+
T Consensus 183 ~~~~~g-~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~--~~~Tv-i~itH~l~~~~~-aD~ 257 (306)
T 3nh6_A 183 QVGERG-LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC--ANRTT-IVVAHRLSTVVN-ADQ 257 (306)
T ss_dssp EESTTS-BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH--TTSEE-EEECCSHHHHHT-CSE
T ss_pred HhcCCc-CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEE-EEEEcChHHHHc-CCE
Confidence 998654 4799999999999999999999999999999999999999999999874 34554 457787777655 999
Q ss_pred EEEEcCCeEEEEcChHHHHH
Q 001293 395 IILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1106)
|++|++|+|++.|+++++++
T Consensus 258 i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 258 ILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999865
No 21
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.3e-41 Score=386.66 Aligned_cols=214 Identities=25% Similarity=0.401 Sum_probs=186.0
Q ss_pred eeeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccC
Q 001293 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1106)
Q Consensus 855 ~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1106)
.+.++|++++|. +..+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 4 ~l~i~~ls~~y~-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i 68 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-------------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTI 68 (359)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred EEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 377899988774 3579999999999999999999999999999999999876 5699999999875
Q ss_pred ----Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCC
Q 001293 935 ----KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1106)
Q Consensus 935 ----~~-~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LS 1009 (1106)
.. ...+|.+|||+|++.++|.+||+||+.|+...+. ...++.++.++++++.++|.++.++.+ .+||
T Consensus 69 ~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LS 140 (359)
T 3fvq_A 69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGK---GRTAQERQRIEAMLELTGISELAGRYP-----HELS 140 (359)
T ss_dssp ESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSS---CCSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSC
T ss_pred cccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCCchHhcCCh-----hhCC
Confidence 22 2345789999999999999999999999764432 234455677899999999999888764 5799
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCccHHHHHhcCeEEEEecCCEEE
Q 001293 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1106)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~ 1088 (1106)
|||||||+|||||+.+|++|||||||||||+..+..+++.++++. +.|.|||++|||++ ++...||++++|++ |+++
T Consensus 141 GGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~-G~i~ 218 (359)
T 3fvq_A 141 GGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQ-GRIL 218 (359)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999998887764 56999999999987 68889999999986 6999
Q ss_pred EecCC
Q 001293 1089 YVGPL 1093 (1106)
Q Consensus 1089 ~~g~~ 1093 (1106)
..|+.
T Consensus 219 ~~g~~ 223 (359)
T 3fvq_A 219 QTASP 223 (359)
T ss_dssp EEECH
T ss_pred EEeCH
Confidence 99875
No 22
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2.9e-41 Score=371.80 Aligned_cols=214 Identities=20% Similarity=0.253 Sum_probs=184.0
Q ss_pred eeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCC
Q 001293 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1106)
Q Consensus 856 l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1106)
++++|+++.|+ +..+|+||||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 7 l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~ 71 (262)
T 1b0u_A 7 LHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNIN 71 (262)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEeeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcc
Confidence 78899988873 2469999999999999999999999999999999999876 56899999998764
Q ss_pred c----------------ccccceEEEEccCCCCCCCCCHHHHHHHHH-hhcCCCCCChHHHHHHHHHHHHHcCCccc-cc
Q 001293 936 Q----------------ETFARISGYCEQNDIHSPFVTIYESLLFSA-WLRLSPEVDSETRKMFIDEVMELVELNPL-RQ 997 (1106)
Q Consensus 936 ~----------------~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~-~~r~~~~~~~~~~~~~v~~~l~~~~l~~~-~~ 997 (1106)
. ..+++.+||++|++.+++.+||+||+.|+. ..+ ....+..++.++++++.++|.+. .+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~ 148 (262)
T 1b0u_A 72 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQG 148 (262)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred ccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhc
Confidence 1 123567999999998999999999999864 222 22334445678899999999887 77
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCe
Q 001293 998 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1077 (1106)
Q Consensus 998 ~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~ 1077 (1106)
.. +.+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++|||++ ++...||+
T Consensus 149 ~~-----~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~ 222 (262)
T 1b0u_A 149 KY-----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 222 (262)
T ss_dssp SC-----GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSE
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 65 3579999999999999999999999999999999999999999999999877999999999987 57788999
Q ss_pred EEEEecCCEEEEecCCC
Q 001293 1078 LFLMKRGGQEIYVGPLG 1094 (1106)
Q Consensus 1078 v~~l~~Gg~~~~~g~~g 1094 (1106)
+++|++ |++++.|+..
T Consensus 223 v~~l~~-G~i~~~g~~~ 238 (262)
T 1b0u_A 223 VIFLHQ-GKIEEEGDPE 238 (262)
T ss_dssp EEEEET-TEEEEEECHH
T ss_pred EEEEEC-CEEEEeCCHH
Confidence 999986 6899888753
No 23
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=5e-41 Score=370.28 Aligned_cols=204 Identities=27% Similarity=0.361 Sum_probs=177.1
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcc---cceEEEEcCCCCCCCCC
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
+++|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (266)
T 4g1u_C 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPF 100 (266)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCC
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHhheEEEEecCCccCCCC
Confidence 35999999999999999999999999999999999999998 9999999999876543 35699999998888899
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccc
Q 001293 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
||+||+.|+...... .+.+..++.+++.+||.+..+..+
T Consensus 101 tv~e~l~~~~~~~~~------------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 139 (266)
T 4g1u_C 101 SVSEVIQMGRAPYGG------------------------------------SQDRQALQQVMAQTDCLALAQRDY----- 139 (266)
T ss_dssp BHHHHHHGGGTTSCS------------------------------------TTHHHHHHHHHHHTTCSTTTTSBG-----
T ss_pred CHHHHHHhhhhhcCc------------------------------------HHHHHHHHHHHHHcCChhHhcCCc-----
Confidence 999999987543210 001234677899999988777655
Q ss_pred cCCChhhhHHHHHHHHHhc------CCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001293 322 RGISGGQKKRVTTGEMMVG------PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1106)
Q Consensus 322 ~~LSGGqrqRvsia~al~~------~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1106)
..|||||||||+|||||+. +|++|||||||+|||+.++..+++.|+++.+ .++.+|+.++|+..++.++||+|
T Consensus 140 ~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~-~~~~tvi~vtHdl~~~~~~~d~v 218 (266)
T 4g1u_C 140 RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTR-QEPLAVCCVLHDLNLAALYADRI 218 (266)
T ss_dssp GGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHH-HSSEEEEEECSCHHHHHHHCSEE
T ss_pred ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-cCCCEEEEEEcCHHHHHHhCCEE
Confidence 4699999999999999999 9999999999999999999999999999865 45556677899999999999999
Q ss_pred EEEcCCeEEEEcChHHHH
Q 001293 396 ILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1106)
++|++|++++.|+++++.
T Consensus 219 ~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 219 MLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEEETTEEEEEECHHHHC
T ss_pred EEEECCEEEEEcCHHHHh
Confidence 999999999999999873
No 24
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=5.8e-41 Score=382.68 Aligned_cols=207 Identities=26% Similarity=0.358 Sum_probs=178.6
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcc-cceEEEEcCCCCCCCCCCH
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1106)
+++|+|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.+|||+|+..+++.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (359)
T 2yyz_A 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTV 92 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCH
T ss_pred EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 35999999999999999999999999999999999999998 9999999999866544 4679999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccC
Q 001293 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1106)
+||+.|+.+..+.. +. +.+..++++++.+||++..+..+ ..
T Consensus 93 ~eni~~~~~~~~~~----------~~------------------------~~~~~v~~~l~~~~L~~~~~r~~-----~~ 133 (359)
T 2yyz_A 93 FENIAFPLRARRIS----------KD------------------------EVEKRVVEIARKLLIDNLLDRKP-----TQ 133 (359)
T ss_dssp HHHHHGGGSSSCSH----------HH------------------------HTTHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred HHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCchHhcCCh-----hh
Confidence 99999986543210 00 11234678899999988777554 46
Q ss_pred CChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001293 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~i 403 (1106)
|||||||||+|||||+.+|++|||||||||||+.++..+.+.|+++.+..+. +++.++|+..++..++|+|++|++|++
T Consensus 134 LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~-tvi~vTHd~~~~~~~adri~vl~~G~i 212 (359)
T 2yyz_A 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGI-TSVYVTHDQAEAMTMASRIAVFNQGKL 212 (359)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCC-EEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCC-EEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999988654344 455578899999999999999999999
Q ss_pred EEEcChHHHHH
Q 001293 404 VYQGPRELVLE 414 (1106)
Q Consensus 404 v~~G~~~~~~~ 414 (1106)
+..|+++++.+
T Consensus 213 ~~~g~~~~l~~ 223 (359)
T 2yyz_A 213 VQYGTPDEVYD 223 (359)
T ss_dssp EEEECHHHHHH
T ss_pred EEeCCHHHHHh
Confidence 99999998753
No 25
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.9e-41 Score=372.07 Aligned_cols=206 Identities=25% Similarity=0.334 Sum_probs=174.4
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCC-----cccceEEEEcCCC-CCCC
Q 001293 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD-NHIG 239 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d-~~~~ 239 (1106)
.+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... ..++.+|||+|++ ..++
T Consensus 22 ~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~ 98 (275)
T 3gfo_A 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLF 98 (275)
T ss_dssp EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCC
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccHHHHhCcEEEEEcCcccccc
Confidence 4999999999999999999999999999999999999998 99999999987421 1236799999986 3455
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccc
Q 001293 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1106)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1106)
.+||+||+.|+....+... .+....++++++.+||++..+..+
T Consensus 99 ~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~--- 141 (275)
T 3gfo_A 99 SASVYQDVSFGAVNMKLPE----------------------------------DEIRKRVDNALKRTGIEHLKDKPT--- 141 (275)
T ss_dssp SSBHHHHHHHHHHTSCCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSBG---
T ss_pred cCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCc---
Confidence 8999999999876543210 011234677899999988777655
Q ss_pred cccCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEc
Q 001293 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1106)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~ 399 (1106)
..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+..+ ++|+.++|+..++.++||+|++|+
T Consensus 142 --~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g-~tvi~vtHdl~~~~~~~drv~~l~ 218 (275)
T 3gfo_A 142 --HCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELG-ITIIIATHDIDIVPLYCDNVFVMK 218 (275)
T ss_dssp --GGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHC-CEEEEEESCCSSGGGGCSEEEEEE
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCC-CEEEEEecCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999863344 455557888899999999999999
Q ss_pred CCeEEEEcChHHHHH
Q 001293 400 DGQIVYQGPRELVLE 414 (1106)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1106)
+|+++++|+++++..
T Consensus 219 ~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 219 EGRVILQGNPKEVFA 233 (275)
T ss_dssp TTEEEEEECHHHHTH
T ss_pred CCEEEEECCHHHHhc
Confidence 999999999998754
No 26
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.2e-40 Score=366.06 Aligned_cols=205 Identities=21% Similarity=0.347 Sum_probs=174.0
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCC--CCc---ccceEEEEcCCCCCCCC
Q 001293 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD--EFV---PQRTAAYISQHDNHIGE 240 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~--~~~---~~~~~~yv~Q~d~~~~~ 240 (1106)
++|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++. ... .++.++||+|++.+++.
T Consensus 38 ~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~ 114 (263)
T 2olj_A 38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPH 114 (263)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTT
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCC
Confidence 5999999999999999999999999999999999999998 999999999874 111 13569999999989999
Q ss_pred CCHHHHHHHHH-HhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccc
Q 001293 241 MTVRETLAFSA-RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1106)
Q Consensus 241 lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1106)
+||+||+.|+. +..+.. . .+....++.+++.+||.+..+..+
T Consensus 115 ~tv~e~l~~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~L~~~~~~~~--- 157 (263)
T 2olj_A 115 MTVLNNITLAPMKVRKWP-R---------------------------------EKAEAKAMELLDKVGLKDKAHAYP--- 157 (263)
T ss_dssp SCHHHHHHHHHHHTSCCC-H---------------------------------HHHHHHHHHHHHHTTCGGGTTSCG---
T ss_pred CCHHHHHHHHHHHHcCCC-H---------------------------------HHHHHHHHHHHHHCCCchHhcCCh---
Confidence 99999999964 332210 0 001224577899999988777554
Q ss_pred cccCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEc
Q 001293 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1106)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~ 399 (1106)
..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+ . +++|+.++|+..++.++||+|++|+
T Consensus 158 --~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~-~-g~tvi~vtHd~~~~~~~~d~v~~l~ 233 (263)
T 2olj_A 158 --DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN-E-GMTMVVVTHEMGFAREVGDRVLFMD 233 (263)
T ss_dssp --GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-T-TCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred --hhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-C-CCEEEEEcCCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999865 3 4556668889999999999999999
Q ss_pred CCeEEEEcChHHHHH
Q 001293 400 DGQIVYQGPRELVLE 414 (1106)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1106)
+|++++.|+++++.+
T Consensus 234 ~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 234 GGYIIEEGKPEDLFD 248 (263)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988753
No 27
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.5e-41 Score=367.66 Aligned_cols=214 Identities=23% Similarity=0.320 Sum_probs=184.5
Q ss_pred eeeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccC
Q 001293 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1106)
Q Consensus 855 ~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1106)
.++++|+++.|. +..+|+||||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 15 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 79 (256)
T 1vpl_A 15 AVVVKDLRKRIG-------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNV 79 (256)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred eEEEEEEEEEEC-------------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 478999988873 2469999999999999999999999999999999999876 5689999999876
Q ss_pred Cc--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHH
Q 001293 935 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1012 (1106)
Q Consensus 935 ~~--~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGq 1012 (1106)
.. ..+++.+||++|++.+++.+||+||+.|....+. ...+..++.++++++.++|.++.+..+ .+|||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq 151 (256)
T 1vpl_A 80 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGM 151 (256)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHH
T ss_pred CccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHH
Confidence 43 2345679999999998899999999998754432 223334466889999999998877763 5799999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeEEEEecCCEEEEecC
Q 001293 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1106)
Q Consensus 1013 rqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~~~g~ 1092 (1106)
|||++|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ ++...||++++|++ |++++.|+
T Consensus 152 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 229 (256)
T 1vpl_A 152 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 229 (256)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEEC-CEEEEecC
Confidence 99999999999999999999999999999999999999999877999999999986 46677999999986 68888887
Q ss_pred C
Q 001293 1093 L 1093 (1106)
Q Consensus 1093 ~ 1093 (1106)
.
T Consensus 230 ~ 230 (256)
T 1vpl_A 230 V 230 (256)
T ss_dssp H
T ss_pred H
Confidence 4
No 28
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=7.2e-41 Score=382.28 Aligned_cols=207 Identities=27% Similarity=0.389 Sum_probs=179.0
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcc-cceEEEEcCCCCCCCCCCH
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1106)
+++|+|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..+++.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (362)
T 2it1_A 16 FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTV 92 (362)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCH
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCH
Confidence 35999999999999999999999999999999999999998 9999999999866544 4679999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccC
Q 001293 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1106)
+||+.|+.+..+... .+.+..++++++.+||++..+..+ ..
T Consensus 93 ~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~-----~~ 133 (362)
T 2it1_A 93 YKNIAFPLELRKAPR----------------------------------EEIDKKVREVAKMLHIDKLLNRYP-----WQ 133 (362)
T ss_dssp HHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCTTCTTCCG-----GG
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhhCCh-----hh
Confidence 999999876543210 011234677899999988777554 46
Q ss_pred CChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001293 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~i 403 (1106)
|||||||||+|||||+.+|++|||||||||||+.++..+.+.|+++.+..+. ++|.++|+..++..++|+|++|++|++
T Consensus 134 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~-tvi~vTHd~~~a~~~adri~vl~~G~i 212 (362)
T 2it1_A 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGI-TTVYVTHDQAEALAMADRIAVIREGEI 212 (362)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCC-EEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998654344 455578899999999999999999999
Q ss_pred EEEcChHHHHH
Q 001293 404 VYQGPRELVLE 414 (1106)
Q Consensus 404 v~~G~~~~~~~ 414 (1106)
+..|+++++..
T Consensus 213 ~~~g~~~~~~~ 223 (362)
T 2it1_A 213 LQVGTPDEVYY 223 (362)
T ss_dssp EEEECHHHHHH
T ss_pred EEEcCHHHHHh
Confidence 99999998743
No 29
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=8e-41 Score=360.09 Aligned_cols=200 Identities=26% Similarity=0.354 Sum_probs=169.2
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcc-------cceEEEEcCCCCC
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNH 237 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1106)
+++|+|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|++.+
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l 93 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYL 93 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCC
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHHHHhCcEEEEecCccc
Confidence 35999999999999999999999999999999999999998 9999999998865432 1569999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 001293 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1106)
++.+||+||+.|+....+... .+.+..++.+++.+||.+..+..+
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 138 (224)
T 2pcj_A 94 IPELTALENVIVPMLKMGKPK----------------------------------KEAKERGEYLLSELGLGDKLSRKP- 138 (224)
T ss_dssp CTTSCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCTTCTTCCG-
T ss_pred CCCCCHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh-
Confidence 999999999999765432110 001124567899999988777655
Q ss_pred cccccCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 001293 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1106)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iil 397 (1106)
..|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+. +. +|+.++|+...+ ++||+|++
T Consensus 139 ----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~-tvi~vtHd~~~~-~~~d~v~~ 211 (224)
T 2pcj_A 139 ----YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GT-SIVMVTHERELA-ELTHRTLE 211 (224)
T ss_dssp ----GGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TC-EEEEECSCHHHH-TTSSEEEE
T ss_pred ----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CC-EEEEEcCCHHHH-HhCCEEEE
Confidence 469999999999999999999999999999999999999999999998653 44 455567777766 89999999
Q ss_pred EcCCeEEEEcCh
Q 001293 398 LSDGQIVYQGPR 409 (1106)
Q Consensus 398 L~~G~iv~~G~~ 409 (1106)
|++|+++++|++
T Consensus 212 l~~G~i~~~g~~ 223 (224)
T 2pcj_A 212 MKDGKVVGEITR 223 (224)
T ss_dssp EETTEEEEEEEC
T ss_pred EECCEEEEEeee
Confidence 999999999864
No 30
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=2.4e-40 Score=411.35 Aligned_cols=196 Identities=29% Similarity=0.376 Sum_probs=148.4
Q ss_pred EeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHh-C----C------CCCC--eeee------EEEEcCccCCccc-----
Q 001293 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-G----R------KTGG--YITG------NITISGYPKKQET----- 938 (1106)
Q Consensus 883 ~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~-g----~------~~~~--~~~G------~i~i~g~~~~~~~----- 938 (1106)
.|+|||++|++|+++||+|+||||||||+++|+ | . ..+. ...| .|.+++.++....
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 499999999999999999999999999999853 1 0 1111 2334 4888887753110
Q ss_pred -----------------ccceEEEEccCCCCC----------------------C-------------------------
Q 001293 939 -----------------FARISGYCEQNDIHS----------------------P------------------------- 954 (1106)
Q Consensus 939 -----------------~~~~~gyv~q~~~~~----------------------~------------------------- 954 (1106)
..|..||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 123457777743221 0
Q ss_pred -------CCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCcc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001293 955 -------FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANP 1026 (1106)
Q Consensus 955 -------~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~-~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p 1026 (1106)
.+|+.|++.|... . .. ...+.++++.++|.. ..+.. +..|||||||||+||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------I-PK--IKRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------C-HH--HHHHHHHHHHTTCSSSBTTCC-----GGGCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHhhhcCHHHHHHHHhc------c-hh--HHHHHHHHHHcCCCcccccCc-----hhhCCHHHHHHHHHHHHHhcCC
Confidence 3577787766321 1 11 123567899999976 44544 3579999999999999999875
Q ss_pred ---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeEEEEe-----cCCEEEEecCCC
Q 001293 1027 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLG 1094 (1106)
Q Consensus 1027 ---~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-----~Gg~~~~~g~~g 1094 (1106)
+||||||||+|||+.+...+++.|+++.++|.|||+++|+++ ..+.||++++|. ++|++++.|+..
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~~ 938 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTPE 938 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEEcCCCCCCCCEEEEecCHH
Confidence 999999999999999999999999999888999999999986 346899999995 468999988753
No 31
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=9.7e-41 Score=367.68 Aligned_cols=205 Identities=23% Similarity=0.331 Sum_probs=173.5
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCC----------Cc------ccceEE
Q 001293 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----------FV------PQRTAA 229 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~----------~~------~~~~~~ 229 (1106)
++|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.. .. .++.++
T Consensus 20 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 96 (262)
T 1b0u_A 20 EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLT 96 (262)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEE
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccccccccccChhhHHHHhcceE
Confidence 5999999999999999999999999999999999999998 9999999998751 11 135799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHH-HhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCC
Q 001293 230 YISQHDNHIGEMTVRETLAFSA-RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (1106)
Q Consensus 230 yv~Q~d~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL 308 (1106)
||+|++.+++.+||+||+.|+. +..+.. + .+.+..++.+++.+||
T Consensus 97 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~L 142 (262)
T 1b0u_A 97 MVFQHFNLWSHMTVLENVMEAPIQVLGLS-K---------------------------------HDARERALKYLAKVGI 142 (262)
T ss_dssp EECSSCCCCTTSCHHHHHHHHHHHTTCCC-H---------------------------------HHHHHHHHHHHHHTTC
T ss_pred EEecCcccCCCCcHHHHHHhhHHHhcCCC-H---------------------------------HHHHHHHHHHHHHcCC
Confidence 9999999999999999999964 332210 0 0012246778999999
Q ss_pred ccc-cccccccccccCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhH
Q 001293 309 DVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 387 (1106)
Q Consensus 309 ~~~-~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~ 387 (1106)
.+. .+..+ ..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+ .+ ++|+.++|+..+
T Consensus 143 ~~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~-~g-~tvi~vtHd~~~ 215 (262)
T 1b0u_A 143 DERAQGKYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EG-KTMVVVTHEMGF 215 (262)
T ss_dssp CHHHHTSCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TT-CCEEEECSCHHH
T ss_pred CchhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CC-CEEEEEeCCHHH
Confidence 887 77554 46999999999999999999999999999999999999999999999865 34 445557888899
Q ss_pred HHhhcCeEEEEcCCeEEEEcChHHHHH
Q 001293 388 TYDLFDDIILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 388 ~~~~~D~iilL~~G~iv~~G~~~~~~~ 414 (1106)
+..+||+|++|++|++++.|+++++.+
T Consensus 216 ~~~~~d~v~~l~~G~i~~~g~~~~~~~ 242 (262)
T 1b0u_A 216 ARHVSSHVIFLHQGKIEEEGDPEQVFG 242 (262)
T ss_dssp HHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999988743
No 32
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.5e-40 Score=381.76 Aligned_cols=207 Identities=26% Similarity=0.370 Sum_probs=178.1
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCC------Ccc-cceEEEEcCCCCC
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE------FVP-QRTAAYISQHDNH 237 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~------~~~-~~~~~yv~Q~d~~ 237 (1106)
+++|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.. ..+ ++.+|||+|+..+
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l 92 (372)
T 1g29_1 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (372)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccccCCHhHCCEEEEeCCCcc
Confidence 35999999999999999999999999999999999999998 9999999988754 322 4679999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 001293 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1106)
++.+||+||+.|+.+..+... .+.+..++++++.+||++..+..+
T Consensus 93 ~~~ltv~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~- 137 (372)
T 1g29_1 93 YPHMTVYDNIAFPLKLRKVPR----------------------------------QEIDQRVREVAELLGLTELLNRKP- 137 (372)
T ss_dssp CTTSCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHHTCGGGTTCCG-
T ss_pred CCCCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCCc-
Confidence 999999999999876543210 011234677899999988777554
Q ss_pred cccccCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 001293 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1106)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iil 397 (1106)
..|||||||||+|||||+.+|++|||||||||||+.++..+.+.|+++.+..+. ++|.++|+..++..+||+|++
T Consensus 138 ----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~-tvi~vTHd~~~a~~~adri~v 212 (372)
T 1g29_1 138 ----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGV-TTIYVTHDQVEAMTMGDRIAV 212 (372)
T ss_dssp ----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHCSEEEE
T ss_pred ----ccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCC-EEEEECCCHHHHHHhCCEEEE
Confidence 469999999999999999999999999999999999999999999988654344 455578899999999999999
Q ss_pred EcCCeEEEEcChHHHHH
Q 001293 398 LSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 398 L~~G~iv~~G~~~~~~~ 414 (1106)
|++|+++..|+++++..
T Consensus 213 l~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 213 MNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EeCCEEEEeCCHHHHHh
Confidence 99999999999998743
No 33
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=3.6e-41 Score=370.46 Aligned_cols=218 Identities=25% Similarity=0.283 Sum_probs=184.2
Q ss_pred eeeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccC
Q 001293 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1106)
Q Consensus 855 ~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1106)
.+.++|+++.|+ +.++|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 7 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 71 (257)
T 1g6h_A 7 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI 71 (257)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEeeeEEEEC-------------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 378899988874 2469999999999999999999999999999999999876 4689999999876
Q ss_pred Ccc----cccceEEEEccCCCCCCCCCHHHHHHHHHhh-cCCC---------CCChHHHHHHHHHHHHHcCCcccccccc
Q 001293 935 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWL-RLSP---------EVDSETRKMFIDEVMELVELNPLRQSLV 1000 (1106)
Q Consensus 935 ~~~----~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~-r~~~---------~~~~~~~~~~v~~~l~~~~l~~~~~~~~ 1000 (1106)
... ..++.+||++|++.+++.+||+||+.++... +... ....+..++.++++++.++|.+..+..+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 151 (257)
T 1g6h_A 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151 (257)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence 431 2345799999999888889999999986532 1110 0122334566889999999988877763
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeEEE
Q 001293 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1080 (1106)
Q Consensus 1001 g~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~ 1080 (1106)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++|||++ ++...||++++
T Consensus 152 -----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~ 225 (257)
T 1g6h_A 152 -----GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 225 (257)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred -----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 579999999999999999999999999999999999999999999999877999999999997 47788999999
Q ss_pred EecCCEEEEecCCC
Q 001293 1081 MKRGGQEIYVGPLG 1094 (1106)
Q Consensus 1081 l~~Gg~~~~~g~~g 1094 (1106)
|++ |++++.|+..
T Consensus 226 l~~-G~i~~~g~~~ 238 (257)
T 1g6h_A 226 MFN-GQIIAEGRGE 238 (257)
T ss_dssp EET-TEEEEEEESH
T ss_pred EEC-CEEEEEeCHH
Confidence 986 6888888754
No 34
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.2e-40 Score=381.81 Aligned_cols=206 Identities=25% Similarity=0.347 Sum_probs=171.7
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcc-cceEEEEcCCCCCCCCCCHH
Q 001293 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.+|||+|+..+++.+||+
T Consensus 25 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 101 (372)
T 1v43_A 25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVY 101 (372)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHH
Confidence 5999999999999999999999999999999999999998 9999999999866544 46799999999999999999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCC
Q 001293 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1106)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1106)
||+.|+.+..+... .+.+..++++++.+||.+..+..+ ..|
T Consensus 102 eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~-----~~L 142 (372)
T 1v43_A 102 ENIAFPLKIKKFPK----------------------------------DEIDKRVRWAAELLQIEELLNRYP-----AQL 142 (372)
T ss_dssp HHHHTTCC--CCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCT-----TTC
T ss_pred HHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCCh-----hhC
Confidence 99999764332110 011234678899999998777554 569
Q ss_pred ChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeEE
Q 001293 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1106)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv 404 (1106)
||||||||+|||||+.+|++||||||||+||+.++..+.+.|+++.+..+. ++|.++|+..++..++|+|++|++|+++
T Consensus 143 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~-tvi~vTHd~~~a~~~adri~vl~~G~i~ 221 (372)
T 1v43_A 143 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKV-TTIYVTHDQVEAMTMGDRIAVMNRGQLL 221 (372)
T ss_dssp CSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988654344 4555788999999999999999999999
Q ss_pred EEcChHHHHH
Q 001293 405 YQGPRELVLE 414 (1106)
Q Consensus 405 ~~G~~~~~~~ 414 (1106)
..|+++++..
T Consensus 222 ~~g~~~~l~~ 231 (372)
T 1v43_A 222 QIGSPTEVYL 231 (372)
T ss_dssp EEECHHHHHH
T ss_pred EeCCHHHHHh
Confidence 9999998743
No 35
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.1e-40 Score=379.48 Aligned_cols=215 Identities=24% Similarity=0.367 Sum_probs=187.1
Q ss_pred eeeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccC
Q 001293 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1106)
Q Consensus 855 ~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1106)
.+.++|++++|+ ++..+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 14 ~l~~~~l~~~y~------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i 79 (355)
T 1z47_A 14 TIEFVGVEKIYP------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRV 79 (355)
T ss_dssp EEEEEEEEECCT------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEEEEEEEc------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEEC
Confidence 588999988872 12348999999999999999999999999999999999876 5689999999876
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHH
Q 001293 935 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1106)
Q Consensus 935 ~~-~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqr 1013 (1106)
.. ...+|.+||++|++.+++.+||+||+.|+...+. .+.++.++.++++++.++|.++.++.+ .+||||||
T Consensus 80 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~ 151 (355)
T 1z47_A 80 TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKR---VPKDEMDARVRELLRFMRLESYANRFP-----HELSGGQQ 151 (355)
T ss_dssp TTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHH
T ss_pred CcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHH
Confidence 43 2345789999999999999999999999865542 334555677899999999999888763 57999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhcCeEEEEecCCEEEEecC
Q 001293 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1106)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~~~g~ 1092 (1106)
|||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++...||++++|++ |+++..|+
T Consensus 152 QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~ 229 (355)
T 1z47_A 152 QRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHE-GNVEQFGT 229 (355)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998654 899999999987 67889999999986 68998887
Q ss_pred C
Q 001293 1093 L 1093 (1106)
Q Consensus 1093 ~ 1093 (1106)
.
T Consensus 230 ~ 230 (355)
T 1z47_A 230 P 230 (355)
T ss_dssp H
T ss_pred H
Confidence 4
No 36
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.3e-40 Score=378.62 Aligned_cols=201 Identities=24% Similarity=0.362 Sum_probs=176.1
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcc-cceEEEEcCCCCCCCCCCHHH
Q 001293 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRE 245 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 245 (1106)
+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..+++.+||+|
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 91 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHH
Confidence 999999999999999999999999999999999999998 9999999998865433 467999999999999999999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCCC
Q 001293 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1106)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1106)
|+.|+.+..+... . ..++++++.+||++..|..+ .+||
T Consensus 92 nl~~~~~~~~~~~------------------------------------~-~~v~~~l~~~~L~~~~~~~~-----~~LS 129 (348)
T 3d31_A 92 NLEFGMRMKKIKD------------------------------------P-KRVLDTARDLKIEHLLDRNP-----LTLS 129 (348)
T ss_dssp HHHHHHHHHCCCC------------------------------------H-HHHHHHHHHTTCTTTTTSCG-----GGSC
T ss_pred HHHHHHHHcCCCH------------------------------------H-HHHHHHHHHcCCchHhcCCh-----hhCC
Confidence 9999865432110 0 23567899999998777554 4699
Q ss_pred hhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeEEE
Q 001293 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1106)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv~ 405 (1106)
|||||||+|||||+.+|++|||||||||||+.++..+.+.|+++.+.. +++++.++|+..++..++|+|++|++|+++.
T Consensus 130 gGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~-g~tii~vTHd~~~~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN-KLTVLHITHDQTEARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHCSEEEEESSSCEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999986543 4455557889999999999999999999999
Q ss_pred EcChHHHH
Q 001293 406 QGPRELVL 413 (1106)
Q Consensus 406 ~G~~~~~~ 413 (1106)
.|+++++.
T Consensus 209 ~g~~~~~~ 216 (348)
T 3d31_A 209 VGKPEEIF 216 (348)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99999874
No 37
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-40 Score=362.84 Aligned_cols=214 Identities=22% Similarity=0.324 Sum_probs=180.7
Q ss_pred eeeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccC
Q 001293 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1106)
Q Consensus 855 ~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1106)
.+.++|+++.|+ +..+|+||||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (240)
T 1ji0_A 6 VLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEEeEEEEEC-------------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 378899988874 2469999999999999999999999999999999999876 5689999999886
Q ss_pred Ccc---c-ccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcC-CccccccccCCCCCCCCC
Q 001293 935 KQE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-LNPLRQSLVGLPGVSGLS 1009 (1106)
Q Consensus 935 ~~~---~-~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~-l~~~~~~~~g~~g~~~LS 1009 (1106)
... . .++.+||++|++.+++.+||+||+.|+.... ...+...+.++++++.++ +.+..+.. +.+||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 141 (240)
T 1ji0_A 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQL-----GGTLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSB-----SSSSC
T ss_pred CCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCC-----hhhCC
Confidence 432 1 2345999999999999999999999864211 112233456788999995 87776665 45799
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeEEEEecCCEEEE
Q 001293 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1106)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~~ 1089 (1106)
||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++|||++ ++.+.||++++|++ |++++
T Consensus 142 gGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~ 219 (240)
T 1ji0_A 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVL 219 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999777999999999986 57789999999986 68888
Q ss_pred ecCCC
Q 001293 1090 VGPLG 1094 (1106)
Q Consensus 1090 ~g~~g 1094 (1106)
.|+..
T Consensus 220 ~g~~~ 224 (240)
T 1ji0_A 220 EGKAS 224 (240)
T ss_dssp EEEHH
T ss_pred EcCHH
Confidence 88743
No 38
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.8e-40 Score=362.04 Aligned_cols=205 Identities=25% Similarity=0.321 Sum_probs=174.6
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCc--ccceEEEEcCCCCCCCCCCH
Q 001293 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1106)
++|+|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++||+|++.+++.+||
T Consensus 29 ~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv 105 (256)
T 1vpl_A 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQG 105 (256)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBH
T ss_pred EEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcH
Confidence 5999999999999999999999999999999999999998 999999999875421 23579999999989999999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccC
Q 001293 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1106)
+||+.|+....+... .+....++++++.+||++..++.+ ..
T Consensus 106 ~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 146 (256)
T 1vpl_A 106 IEYLRFVAGFYASSS----------------------------------SEIEEMVERATEIAGLGEKIKDRV-----ST 146 (256)
T ss_dssp HHHHHHHHHHHCCCH----------------------------------HHHHHHHHHHHHHHCCGGGGGSBG-----GG
T ss_pred HHHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHCCCchHhcCCh-----hh
Confidence 999999754432110 001124567899999988777655 46
Q ss_pred CChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001293 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~i 403 (1106)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.. . +++|+.++|+..++..+||++++|++|++
T Consensus 147 LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tiiivtHd~~~~~~~~d~v~~l~~G~i 224 (256)
T 1vpl_A 147 YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-E-GLTILVSSHNMLEVEFLCDRIALIHNGTI 224 (256)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEEECCHHHHTTTCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-C-CCEEEEEcCCHHHHHHHCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998754 3 44555578888899999999999999999
Q ss_pred EEEcChHHHHH
Q 001293 404 VYQGPRELVLE 414 (1106)
Q Consensus 404 v~~G~~~~~~~ 414 (1106)
++.|+++++.+
T Consensus 225 ~~~g~~~~~~~ 235 (256)
T 1vpl_A 225 VETGTVEELKE 235 (256)
T ss_dssp EEEEEHHHHHH
T ss_pred EEecCHHHHHH
Confidence 99999988754
No 39
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=7.4e-41 Score=368.96 Aligned_cols=213 Identities=24% Similarity=0.313 Sum_probs=183.6
Q ss_pred eeeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccC
Q 001293 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1106)
Q Consensus 855 ~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1106)
.+.++|++|.|. +..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHVQ-------------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS--PSHGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC--CSSCEEEETTEET
T ss_pred eEEEEeEEEEeC-------------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 478899998874 3579999999999999999999999999999999999876 4689999999886
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHH
Q 001293 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1106)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgG 1011 (1106)
.. ..+++.+||++|++.+++.+||+||+.++..... ....++.++++++.+++.++.+..+ .+||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 145 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYG-----GSQDRQALQQVMAQTDCLALAQRDY-----RVLSGG 145 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSC-----STTHHHHHHHHHHHTTCSTTTTSBG-----GGCCHH
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcC-----cHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 53 2345679999999988888999999998754321 1223456889999999998887764 579999
Q ss_pred HHHHHHHHHHHhc------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhcCeEEEEecC
Q 001293 1012 QRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1106)
Q Consensus 1012 qrqrl~iA~aL~~------~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~G 1084 (1106)
||||++|||||+. +|++|||||||+|||+.++..+++.|+++.++ |+|||++|||++ ++...||++++|++
T Consensus 146 q~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~- 223 (266)
T 4g1u_C 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQ- 223 (266)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEET-
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEEC-
Confidence 9999999999999 99999999999999999999999999999755 579999999987 57789999999986
Q ss_pred CEEEEecCCC
Q 001293 1085 GQEIYVGPLG 1094 (1106)
Q Consensus 1085 g~~~~~g~~g 1094 (1106)
|++++.|+..
T Consensus 224 G~i~~~g~~~ 233 (266)
T 4g1u_C 224 GKLVACGTPE 233 (266)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEEcCHH
Confidence 6999999854
No 40
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.7e-40 Score=379.30 Aligned_cols=213 Identities=26% Similarity=0.382 Sum_probs=185.8
Q ss_pred eeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCC
Q 001293 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1106)
Q Consensus 856 l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1106)
+.++|++++|. +..+|+||||+|++|++++|+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (362)
T 2it1_A 4 IKLENIVKKFG-------------NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVT 68 (362)
T ss_dssp EEEEEEEEESS-------------SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 67888887773 2469999999999999999999999999999999999876 56899999998864
Q ss_pred cc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 001293 936 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1106)
Q Consensus 936 ~~-~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrq 1014 (1106)
.. ..+|.+||++|++.+++.+||+||+.|+...+. ...++.++.++++++.++|.++.++.+ .+|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 140 (362)
T 2it1_A 69 ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRK---APREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQ 140 (362)
T ss_dssp TSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHH
T ss_pred cCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHH
Confidence 32 235679999999999999999999999865432 234455677899999999998888763 579999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhcCeEEEEecCCEEEEecCC
Q 001293 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1106)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~~~g~~ 1093 (1106)
||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++...||++++|++ |+++..|+.
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 218 (362)
T 2it1_A 141 RVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIRE-GEILQVGTP 218 (362)
T ss_dssp HHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999999999999999998654 899999999986 67889999999986 689888874
No 41
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.4e-40 Score=379.99 Aligned_cols=205 Identities=20% Similarity=0.282 Sum_probs=176.8
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCC-----Cc-ccceEEEEcCCCCCCCC
Q 001293 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE-----FV-PQRTAAYISQHDNHIGE 240 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~-----~~-~~~~~~yv~Q~d~~~~~ 240 (1106)
+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .. .++.+|||+|+..+++.
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ 96 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPN 96 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTT
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccccccCChhhCCEEEEeCCCccCCC
Confidence 999999999999999999999999999999999999998 9999999988743 22 24789999999999999
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccc
Q 001293 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1106)
+||+||+.|+.+..+... .+.+..++++++.+||++..+..+
T Consensus 97 ltv~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~~~~---- 138 (353)
T 1oxx_K 97 LTAFENIAFPLTNMKMSK----------------------------------EEIRKRVEEVAKILDIHHVLNHFP---- 138 (353)
T ss_dssp SCHHHHHHGGGTTSSCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCG----
T ss_pred CCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCCh----
Confidence 999999999865432110 011234678899999998777554
Q ss_pred ccCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001293 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1106)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~ 400 (1106)
.+|||||||||+|||||+.+|++|||||||||||+.++..+.+.|+++.+..+. ++|.++|+..++..++|+|++|++
T Consensus 139 -~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~-tvi~vTHd~~~~~~~adri~vl~~ 216 (353)
T 1oxx_K 139 -RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV-TLLVVSHDPADIFAIADRVGVLVK 216 (353)
T ss_dssp -GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCC-EEEEEESCHHHHHHHCSEEEEEET
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHhCCEEEEEEC
Confidence 469999999999999999999999999999999999999999999988654444 455578899999999999999999
Q ss_pred CeEEEEcChHHHHH
Q 001293 401 GQIVYQGPRELVLE 414 (1106)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (1106)
|+++..|+++++.+
T Consensus 217 G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 217 GKLVQVGKPEDLYD 230 (353)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEEcCHHHHHh
Confidence 99999999998753
No 42
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-40 Score=379.46 Aligned_cols=213 Identities=24% Similarity=0.345 Sum_probs=184.3
Q ss_pred eeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCC
Q 001293 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1106)
Q Consensus 856 l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1106)
+.++|++++|+ +..+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 4 IRVVNLKKYFG-------------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVN 68 (359)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECC
Confidence 67888887773 3469999999999999999999999999999999999876 56899999998864
Q ss_pred cc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 001293 936 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1106)
Q Consensus 936 ~~-~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrq 1014 (1106)
.. ..+|.+|||+|++.+++.+||+||+.|+...+ ..+.++.++.++++++.++|.++.++.+ .+|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~Q 140 (359)
T 2yyz_A 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQ 140 (359)
T ss_dssp TSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 32 23567999999999999999999999975432 1223334567899999999998888764 579999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhcCeEEEEecCCEEEEecCC
Q 001293 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1106)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~~~g~~ 1093 (1106)
||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++...||++++|++ |+++..|+.
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 218 (359)
T 2yyz_A 141 RVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQ-GKLVQYGTP 218 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998654 899999999986 57889999999986 689988874
No 43
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.3e-40 Score=376.72 Aligned_cols=206 Identities=26% Similarity=0.388 Sum_probs=178.8
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcc-cceEEEEcCCCCCCCCCCHH
Q 001293 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
++|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..+++.+||+
T Consensus 29 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 105 (355)
T 1z47_A 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVY 105 (355)
T ss_dssp TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHH
Confidence 4899999999999999999999999999999999999998 9999999998865433 46899999999999999999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCC
Q 001293 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1106)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1106)
||+.|+.+..+... .+.+..++++++.+||++..+..+ .+|
T Consensus 106 eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~r~~-----~~L 146 (355)
T 1z47_A 106 DNVSFGLREKRVPK----------------------------------DEMDARVRELLRFMRLESYANRFP-----HEL 146 (355)
T ss_dssp HHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred HHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCCc-----ccC
Confidence 99999876543210 011234678899999998777554 469
Q ss_pred ChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeEE
Q 001293 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1106)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv 404 (1106)
||||||||+|||||+.+|++|||||||||||+.++..+.+.|+++.+..+. ++|.++|+..++..++|+|++|++|+++
T Consensus 147 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~-tvi~vTHd~~~a~~~adri~vl~~G~i~ 225 (355)
T 1z47_A 147 SGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGV-TSVFVTHDQEEALEVADRVLVLHEGNVE 225 (355)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC-EEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988654344 4555889999999999999999999999
Q ss_pred EEcChHHHHH
Q 001293 405 YQGPRELVLE 414 (1106)
Q Consensus 405 ~~G~~~~~~~ 414 (1106)
..|+++++.+
T Consensus 226 ~~g~~~~l~~ 235 (355)
T 1z47_A 226 QFGTPEEVYE 235 (355)
T ss_dssp EEECHHHHHH
T ss_pred EEcCHHHHHh
Confidence 9999998753
No 44
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.7e-40 Score=379.71 Aligned_cols=213 Identities=26% Similarity=0.340 Sum_probs=185.8
Q ss_pred eeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCC
Q 001293 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1106)
Q Consensus 856 l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1106)
+.++|++++|+ +..+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~ 68 (372)
T 1g29_1 4 VRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVA 68 (372)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEE
T ss_pred EEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECc
Confidence 67889988773 2469999999999999999999999999999999999876 56899999998753
Q ss_pred c-------ccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCC
Q 001293 936 Q-------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 1008 (1106)
Q Consensus 936 ~-------~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~L 1008 (1106)
. ...+|.+|||+|+..+++.+||+||+.|+...+. ...++.++.++++++.++|.++.++.+ .+|
T Consensus 69 ~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~L 140 (372)
T 1g29_1 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGLTELLNRKP-----REL 140 (372)
T ss_dssp EGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGS
T ss_pred cccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCCc-----ccC
Confidence 2 1235679999999999999999999999865542 334455677899999999998888763 579
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhcCeEEEEecCCEE
Q 001293 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1106)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~ 1087 (1106)
||||||||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++...||++++|++ |++
T Consensus 141 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i 218 (372)
T 1g29_1 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GVL 218 (372)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeC-CEE
Confidence 999999999999999999999999999999999999999999998654 899999999987 67889999999986 689
Q ss_pred EEecCC
Q 001293 1088 IYVGPL 1093 (1106)
Q Consensus 1088 ~~~g~~ 1093 (1106)
+..|+.
T Consensus 219 ~~~g~~ 224 (372)
T 1g29_1 219 QQVGSP 224 (372)
T ss_dssp EEEECH
T ss_pred EEeCCH
Confidence 998874
No 45
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.9e-40 Score=364.64 Aligned_cols=215 Identities=26% Similarity=0.345 Sum_probs=172.8
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcc----cceEEEEcCCCCCCCCC
Q 001293 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1106)
++|+|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|++.+++.+
T Consensus 21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 97 (257)
T 1g6h_A 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 97 (257)
T ss_dssp EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGS
T ss_pred eeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCC
Confidence 5999999999999999999999999999999999999998 9999999998865432 34699999999889999
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccc
Q 001293 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
||+||+.|+......+ ......+ .. ... ...+....++++++.+||++..++.++
T Consensus 98 tv~enl~~~~~~~~~~----~~~~~~~----~~-~~~------------~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 152 (257)
T 1g6h_A 98 TVLENLLIGEICPGES----PLNSLFY----KK-WIP------------KEEEMVEKAFKILEFLKLSHLYDRKAG---- 152 (257)
T ss_dssp BHHHHHHGGGTSTTSC----HHHHHHH----CS-SCC------------CCHHHHHHHHHHHHHTTCGGGTTSBGG----
T ss_pred cHHHHHHHHHhhhccC----ccccccc----cc-ccC------------CHHHHHHHHHHHHHHcCCchhhCCCch----
Confidence 9999999865320000 0000000 00 000 000112346778999999887776554
Q ss_pred cCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001293 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1106)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G 401 (1106)
.|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+ . +++|+.++|+..++.++||+|++|++|
T Consensus 153 -~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tvi~vtHd~~~~~~~~d~v~~l~~G 229 (257)
T 1g6h_A 153 -ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-K-GITFLIIEHRLDIVLNYIDHLYVMFNG 229 (257)
T ss_dssp -GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEECSCCSTTGGGCSEEEEEETT
T ss_pred -hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 6999999999999999999999999999999999999999999999864 3 445556788888999999999999999
Q ss_pred eEEEEcChHH
Q 001293 402 QIVYQGPREL 411 (1106)
Q Consensus 402 ~iv~~G~~~~ 411 (1106)
++++.|++++
T Consensus 230 ~i~~~g~~~~ 239 (257)
T 1g6h_A 230 QIIAEGRGEE 239 (257)
T ss_dssp EEEEEEESHH
T ss_pred EEEEEeCHHH
Confidence 9999999888
No 46
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.7e-40 Score=358.67 Aligned_cols=203 Identities=23% Similarity=0.334 Sum_probs=170.2
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcc----cceEEEEcCCCCCCCCC
Q 001293 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1106)
++|+|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|++.+++.+
T Consensus 20 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~l 96 (240)
T 1ji0_A 20 HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPEL 96 (240)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTS
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCC
Confidence 5999999999999999999999999999999999999998 9999999998865432 23599999999899999
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcC-Ccccccccccccc
Q 001293 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG-LDVCADTMVGDEM 320 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~~ 320 (1106)
||+||+.|+.... .. . + +....++.+++.++ |.+..+..
T Consensus 97 tv~enl~~~~~~~-~~-~-~--------------------------------~~~~~~~~~l~~~~~l~~~~~~~----- 136 (240)
T 1ji0_A 97 TVYENLMMGAYNR-KD-K-E--------------------------------GIKRDLEWIFSLFPRLKERLKQL----- 136 (240)
T ss_dssp BHHHHHHGGGTTC-CC-S-S--------------------------------HHHHHHHHHHHHCHHHHTTTTSB-----
T ss_pred cHHHHHHHhhhcC-CC-H-H--------------------------------HHHHHHHHHHHHcccHhhHhcCC-----
Confidence 9999999864111 00 0 0 01123456788884 87666654
Q ss_pred ccCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001293 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1106)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~ 400 (1106)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+ .+.| |+.++|+..++.++||+|++|++
T Consensus 137 ~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t-vi~vtHd~~~~~~~~d~v~~l~~ 214 (240)
T 1ji0_A 137 GGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTT-ILLVEQNALGALKVAHYGYVLET 214 (240)
T ss_dssp SSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCC-EEEEESCHHHHHHHCSEEEEEET
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCE-EEEEecCHHHHHHhCCEEEEEEC
Confidence 456999999999999999999999999999999999999999999998864 4444 55578888899999999999999
Q ss_pred CeEEEEcChHHHH
Q 001293 401 GQIVYQGPRELVL 413 (1106)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1106)
|++++.|+++++.
T Consensus 215 G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 215 GQIVLEGKASELL 227 (240)
T ss_dssp TEEEEEEEHHHHH
T ss_pred CEEEEEcCHHHHh
Confidence 9999999988764
No 47
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=1.1e-39 Score=406.47 Aligned_cols=106 Identities=25% Similarity=0.342 Sum_probs=92.9
Q ss_pred HHHHHHHHHcCCccc-cccccCCCCCCCCCHHHHHHHHHHHHHhcC---CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 001293 981 MFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVAN---PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056 (1106)
Q Consensus 981 ~~v~~~l~~~~l~~~-~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~---p~illLDEPtsgLD~~~~~~i~~~l~~~~~~ 1056 (1106)
..+.++++.++|... .+.. +..|||||||||+||++|+.+ |+||||||||+|||+.+...|++.|++++++
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~ 782 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQP-----ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccccCC-----cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 357889999999764 3433 357999999999999999996 6999999999999999999999999999888
Q ss_pred CCeEEEEecCccHHHHHhcCeEEEEe-----cCCEEEEecCC
Q 001293 1057 GRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPL 1093 (1106)
Q Consensus 1057 g~tvi~~~H~~~~~~~~~~D~v~~l~-----~Gg~~~~~g~~ 1093 (1106)
|.|||+++||++ .+ +.||++++|. ++|++++.|+.
T Consensus 783 G~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G~Iv~~g~~ 822 (842)
T 2vf7_A 783 GNTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGGRLVAQGTP 822 (842)
T ss_dssp TCEEEEECCCHH-HH-TTCSEEEEECSSSGGGCCSEEEEECH
T ss_pred CCEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCCEEEEEcCH
Confidence 999999999986 35 7899999995 56899998874
No 48
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.7e-40 Score=378.95 Aligned_cols=213 Identities=23% Similarity=0.350 Sum_probs=179.6
Q ss_pred eeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCC
Q 001293 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1106)
Q Consensus 856 l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1106)
+.++|+++.|+ +..+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 12 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 76 (372)
T 1v43_A 12 VKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVT 76 (372)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECC
Confidence 78899988774 2469999999999999999999999999999999999876 56899999998864
Q ss_pred cc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 001293 936 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1106)
Q Consensus 936 ~~-~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrq 1014 (1106)
.. ..+|.+|||+|+..+++.+||+||+.|+...+ ....++.++.++++++.++|.++.++. +.+|||||||
T Consensus 77 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----~~~LSGGq~Q 148 (372)
T 1v43_A 77 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRY-----PAQLSGGQRQ 148 (372)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSC-----TTTCCSSCHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHH
Confidence 32 23577999999999999999999999875332 234455567789999999999988876 4579999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhcCeEEEEecCCEEEEecCC
Q 001293 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1106)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~~~g~~ 1093 (1106)
||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++...||++++|++ |+++..|+.
T Consensus 149 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 226 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSP 226 (372)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998754 899999999986 67889999999986 689888874
No 49
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.6e-40 Score=379.35 Aligned_cols=213 Identities=27% Similarity=0.375 Sum_probs=185.0
Q ss_pred eeeecccccccChhhHHhhccccCceE--EeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCcc
Q 001293 856 LTFDEVVYSVDMPEEMKVQGVLEDKLV--LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1106)
Q Consensus 856 l~f~~v~y~v~~~~~~~~~~~~~~~~~--~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1106)
+.++|+++.|+ +.. +|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.+
T Consensus 4 l~i~~l~~~y~-------------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~ 68 (353)
T 1oxx_K 4 IIVKNVSKVFK-------------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRL 68 (353)
T ss_dssp EEEEEEEEEEG-------------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEE
T ss_pred EEEEeEEEEEC-------------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEE
Confidence 67888888774 124 8999999999999999999999999999999999876 568999999987
Q ss_pred CCc------ccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCC
Q 001293 934 KKQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 1007 (1106)
Q Consensus 934 ~~~------~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~ 1007 (1106)
+.. ...+|.+||++|++.+++.+||+||+.|+...+ ..+.+..++.++++++.++|.++.++.+ .+
T Consensus 69 i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~ 140 (353)
T 1oxx_K 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RE 140 (353)
T ss_dssp EEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred CcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hh
Confidence 532 234678999999999999999999999975433 2344555677899999999999888764 57
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhcCeEEEEecCCE
Q 001293 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1106)
Q Consensus 1008 LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1086 (1106)
|||||||||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++...||++++|++ |+
T Consensus 141 LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~ 218 (353)
T 1oxx_K 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GK 218 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998654 999999999987 68889999999986 68
Q ss_pred EEEecCC
Q 001293 1087 EIYVGPL 1093 (1106)
Q Consensus 1087 ~~~~g~~ 1093 (1106)
++..|+.
T Consensus 219 i~~~g~~ 225 (353)
T 1oxx_K 219 LVQVGKP 225 (353)
T ss_dssp EEEEECH
T ss_pred EEEEcCH
Confidence 9888874
No 50
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=4.7e-40 Score=357.07 Aligned_cols=202 Identities=22% Similarity=0.306 Sum_probs=171.9
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCc-ccceEEEEcCCCCCCCCCCHHH
Q 001293 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYISQHDNHIGEMTVRE 245 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 245 (1106)
+|+|||+.+++ ++++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++||+|++.+++.+||+|
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 89 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYR 89 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHH
Confidence 49999999999 999999999999999999999999998 999999999875432 2467999999999999999999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCCC
Q 001293 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1106)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1106)
|+.|+....+. .. .+..++.+++.+||.+..+..+ ..||
T Consensus 90 nl~~~~~~~~~-------~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~LS 128 (240)
T 2onk_A 90 NIAYGLRNVER-------VE-----------------------------RDRRVREMAEKLGIAHLLDRKP-----ARLS 128 (240)
T ss_dssp HHHTTCTTSCH-------HH-----------------------------HHHHHHHHHHTTTCTTTTTCCG-----GGSC
T ss_pred HHHHHHHHcCC-------ch-----------------------------HHHHHHHHHHHcCCHHHhcCCh-----hhCC
Confidence 99986532210 00 0123567889999988777555 4699
Q ss_pred hhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeEEE
Q 001293 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1106)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv~ 405 (1106)
|||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+..+.|+| .++|+..++..+||+|++|++|++++
T Consensus 129 gGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi-~vtHd~~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPIL-HVTHDLIEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEE-EEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE-EEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999988653355554 46788889999999999999999999
Q ss_pred EcChHHHHH
Q 001293 406 QGPRELVLE 414 (1106)
Q Consensus 406 ~G~~~~~~~ 414 (1106)
.|+++++.+
T Consensus 208 ~g~~~~~~~ 216 (240)
T 2onk_A 208 KGKLKELFS 216 (240)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHh
Confidence 999988753
No 51
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=3.9e-40 Score=374.71 Aligned_cols=209 Identities=21% Similarity=0.286 Sum_probs=181.5
Q ss_pred eeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCC
Q 001293 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1106)
Q Consensus 856 l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1106)
+.++|++++|+ +. +|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~-------------~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~ 65 (348)
T 3d31_A 2 IEIESLSRKWK-------------NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEEEECS-------------SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECC
Confidence 56788887763 24 8999999999999999999999999999999999876 56899999998864
Q ss_pred c-ccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 001293 936 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1106)
Q Consensus 936 ~-~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrq 1014 (1106)
. ...+|.+||++|++.+++.+||+||+.|+...+... .. +.++++++.++|.++.++.+ .+|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~---~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~Q 134 (348)
T 3d31_A 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK---DP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (348)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCC---CH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred CCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCC---HH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 3 234567999999999999999999999986554321 11 55889999999999888764 579999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhcCeEEEEecCCEEEEecCC
Q 001293 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1106)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~~~g~~ 1093 (1106)
||+|||||+.+|++|||||||||||+.++..+++.|+++.+ .|.|||++|||++ ++...+|++++|++ |+++..|+.
T Consensus 135 RvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 212 (348)
T 3d31_A 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (348)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999999999999865 4999999999986 68889999999986 688888874
No 52
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=3e-40 Score=366.41 Aligned_cols=221 Identities=22% Similarity=0.354 Sum_probs=179.7
Q ss_pred CCCCceeeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEE
Q 001293 850 PFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI 929 (1106)
Q Consensus 850 p~~p~~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i 929 (1106)
+..+..+.++|+++.|+ +.++|+||||+|++||++||+||||||||||+++|+|... +.+|+|.+
T Consensus 16 ~~~~~~l~~~~l~~~y~-------------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~ 80 (279)
T 2ihy_A 16 RGSHMLIQLDQIGRMKQ-------------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNL 80 (279)
T ss_dssp ---CEEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEE
T ss_pred CCCCceEEEEeEEEEEC-------------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEE
Confidence 33333589999998874 2469999999999999999999999999999999999876 46899999
Q ss_pred cCccCC--c---ccccceEEEEccCCCCC--CCCCHHHHHHHHHhhc--CCCCCChHHHHHHHHHHHHHcCCcccccccc
Q 001293 930 SGYPKK--Q---ETFARISGYCEQNDIHS--PFVTIYESLLFSAWLR--LSPEVDSETRKMFIDEVMELVELNPLRQSLV 1000 (1106)
Q Consensus 930 ~g~~~~--~---~~~~~~~gyv~q~~~~~--~~~tv~e~l~~~~~~r--~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~ 1000 (1106)
+|.+.. . ..+++.+||++|++.+. +.+||+||+.|+.... ..... .+...+.++++++.++|.++.+..+
T Consensus 81 ~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~ 159 (279)
T 2ihy_A 81 FGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDI-DDEIRNEAHQLLKLVGMSAKAQQYI 159 (279)
T ss_dssp TTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------C-CHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCC-cHHHHHHHHHHHHHcCChhHhcCCh
Confidence 998764 2 23456799999987543 3569999998753211 01111 2333466889999999988877764
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeE--EEEecCccHHHHHhcCeE
Q 001293 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV--VCTIHQPSIDIFEAFDEL 1078 (1106)
Q Consensus 1001 g~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tv--i~~~H~~~~~~~~~~D~v 1078 (1106)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|| |++|||++ ++.+.||++
T Consensus 160 -----~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v 233 (279)
T 2ihy_A 160 -----GYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKI 233 (279)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEE
T ss_pred -----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEE
Confidence 5799999999999999999999999999999999999999999999987669999 99999987 467889999
Q ss_pred EEEecCCEEEEecCC
Q 001293 1079 FLMKRGGQEIYVGPL 1093 (1106)
Q Consensus 1079 ~~l~~Gg~~~~~g~~ 1093 (1106)
++|++ |++++.|+.
T Consensus 234 ~~l~~-G~i~~~g~~ 247 (279)
T 2ihy_A 234 LLLKD-GQSIQQGAV 247 (279)
T ss_dssp EEEET-TEEEEEEEH
T ss_pred EEEEC-CEEEEECCH
Confidence 99986 688888874
No 53
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=8.5e-40 Score=358.06 Aligned_cols=219 Identities=26% Similarity=0.271 Sum_probs=174.6
Q ss_pred eeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCC
Q 001293 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1106)
Q Consensus 856 l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1106)
+.++|++++|+ +..+|+||||+|++|+++||+||||||||||+++|+|.....+.+|+|.++|.++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~ 70 (250)
T 2d2e_A 4 LEIRDLWASID-------------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENIL 70 (250)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECC
Confidence 67889988874 24699999999999999999999999999999999997211267899999998764
Q ss_pred cc---cc-cceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCC-ccccccccCCCCCCC-CC
Q 001293 936 QE---TF-ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-NPLRQSLVGLPGVSG-LS 1009 (1106)
Q Consensus 936 ~~---~~-~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l-~~~~~~~~g~~g~~~-LS 1009 (1106)
.. .. ++.++|++|++.+++.+||+||+.+............+...+.++++++.+++ .++.+.. +.. ||
T Consensus 71 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~~LS 145 (250)
T 2d2e_A 71 ELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRY-----LNEGFS 145 (250)
T ss_dssp TSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSB-----TTCC--
T ss_pred CCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCC-----cccCCC
Confidence 31 12 34589999999999999999999886532111112223334668899999999 4777765 345 99
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHh-cCeEEEEecCCEEE
Q 001293 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGGQEI 1088 (1106)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~D~v~~l~~Gg~~~ 1088 (1106)
||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++|||++ .+... ||++++|++ |+++
T Consensus 146 gGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~-G~i~ 223 (250)
T 2d2e_A 146 GGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMD-GRVV 223 (250)
T ss_dssp --HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998767999999999987 35555 599999986 6888
Q ss_pred EecCCC
Q 001293 1089 YVGPLG 1094 (1106)
Q Consensus 1089 ~~g~~g 1094 (1106)
+.|+..
T Consensus 224 ~~g~~~ 229 (250)
T 2d2e_A 224 ATGGPE 229 (250)
T ss_dssp EEESHH
T ss_pred EEeCHH
Confidence 888753
No 54
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=8.1e-40 Score=366.06 Aligned_cols=213 Identities=24% Similarity=0.320 Sum_probs=177.4
Q ss_pred CCceeeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcC
Q 001293 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (1106)
Q Consensus 852 ~p~~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g 931 (1106)
.+..|.|+||+|+|+. ...+|+||||+|++|+++||+||||||||||+++|+|... +..|+|.++|
T Consensus 50 ~~~~i~~~~vs~~y~~------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G 115 (306)
T 3nh6_A 50 QKGRIEFENVHFSYAD------------GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD--ISSGCIRIDG 115 (306)
T ss_dssp SSCCEEEEEEEEESST------------TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC--CSEEEEEETT
T ss_pred CCCeEEEEEEEEEcCC------------CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCcEEEECC
Confidence 4557999999999851 2469999999999999999999999999999999999876 5699999999
Q ss_pred ccCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCcccccc-------ccC
Q 001293 932 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS-------LVG 1001 (1106)
Q Consensus 932 ~~~~~---~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~-------~~g 1001 (1106)
.++.. ..+++.+|||+|++.+++ .||+||+.|+.. ... .+.++++++.+++.++.+. .++
T Consensus 116 ~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~-----~~~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~ 185 (306)
T 3nh6_A 116 QDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRV-----TAG----NDEVEAAAQAAGIHDAIMAFPEGYRTQVG 185 (306)
T ss_dssp EETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTST-----TCC----HHHHHHHHHHHTCHHHHHHSTTGGGCEES
T ss_pred EEcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhcc-----cCC----HHHHHHHHHHhCcHHHHHhccchhhhHhc
Confidence 98754 345678999999998875 699999998632 111 2336777888877654433 233
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeEEEE
Q 001293 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1106)
Q Consensus 1002 ~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l 1081 (1106)
.. +.+|||||||||+|||||+++|+|||||||||+||+.++..|++.|+++. +++|||++||+++. + ..||+|++|
T Consensus 186 ~~-g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~-~-~~aD~i~vl 261 (306)
T 3nh6_A 186 ER-GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAHRLST-V-VNADQILVI 261 (306)
T ss_dssp TT-SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH-TTSEEEEECCSHHH-H-HTCSEEEEE
T ss_pred CC-cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEEcChHH-H-HcCCEEEEE
Confidence 33 35799999999999999999999999999999999999999999999986 47999999999863 4 459999999
Q ss_pred ecCCEEEEecCC
Q 001293 1082 KRGGQEIYVGPL 1093 (1106)
Q Consensus 1082 ~~Gg~~~~~g~~ 1093 (1106)
++ |+++..|+.
T Consensus 262 ~~-G~iv~~G~~ 272 (306)
T 3nh6_A 262 KD-GCIVERGRH 272 (306)
T ss_dssp ET-TEEEEEECH
T ss_pred EC-CEEEEECCH
Confidence 86 699999974
No 55
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=6.4e-40 Score=362.15 Aligned_cols=217 Identities=22% Similarity=0.324 Sum_probs=179.2
Q ss_pred eeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCC
Q 001293 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1106)
Q Consensus 856 l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1106)
+.++|+++.|+... ...+.+|+||||+|++|+++||+||||||||||+++|+|... +..|+|.++|.+..
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~ 72 (266)
T 2yz2_A 3 IEVVNVSHIFHRGT--------PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKK 72 (266)
T ss_dssp EEEEEEEEEESTTS--------TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEEEEEEecCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECc
Confidence 67888888774100 001469999999999999999999999999999999999876 56899999998865
Q ss_pred cccccceEEEEccCC-CCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCc--cccccccCCCCCCCCCHHH
Q 001293 936 QETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN--PLRQSLVGLPGVSGLSTEQ 1012 (1106)
Q Consensus 936 ~~~~~~~~gyv~q~~-~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~--~~~~~~~g~~g~~~LSgGq 1012 (1106)
...+++.+||++|++ ..++.+||+||+.|+.... . ..+..++.++++++.++|. ++.+..+ .+|||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~---~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq 143 (266)
T 2yz2_A 73 GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF-Y---PDRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGE 143 (266)
T ss_dssp HHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT-C---TTSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHH
T ss_pred hHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc-C---CHHHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHH
Confidence 434556799999995 4556789999999864322 1 1111234578899999998 8777663 5799999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeEEEEecCCEEEEecC
Q 001293 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1106)
Q Consensus 1013 rqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~~~g~ 1092 (1106)
|||++|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++|||++ .+...||++++|++ |++++.|+
T Consensus 144 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 221 (266)
T 2yz2_A 144 KRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGT 221 (266)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCC
Confidence 99999999999999999999999999999999999999999767999999999997 46678999999986 58888876
Q ss_pred C
Q 001293 1093 L 1093 (1106)
Q Consensus 1093 ~ 1093 (1106)
.
T Consensus 222 ~ 222 (266)
T 2yz2_A 222 R 222 (266)
T ss_dssp H
T ss_pred H
Confidence 3
No 56
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=5.7e-40 Score=356.38 Aligned_cols=209 Identities=20% Similarity=0.300 Sum_probs=177.6
Q ss_pred eeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCC
Q 001293 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1106)
Q Consensus 856 l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1106)
++++|+++.|+ + +|+||||+|++ +++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~-------------~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 63 (240)
T 2onk_A 2 FLKVRAEKRLG-------------N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADIT 63 (240)
T ss_dssp CEEEEEEEEET-------------T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeC-------------C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 46788887763 1 49999999999 9999999999999999999999876 56899999998764
Q ss_pred c-ccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 001293 936 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1106)
Q Consensus 936 ~-~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrq 1014 (1106)
. ...++.+||++|++.+++.+||+||+.|+...+ .....++.++++++.++|.++.+..+ .+|||||||
T Consensus 64 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkq 133 (240)
T 2onk_A 64 PLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQ 133 (240)
T ss_dssp TSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHH
T ss_pred cCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHH
Confidence 3 234567999999999999999999999864321 11122456889999999988877663 579999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhcCeEEEEecCCEEEEecCC
Q 001293 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1106)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~~~g~~ 1093 (1106)
|++|||||+.+|++|||||||+|||+.+++.+++.|+++.++ |+|||++|||++ ++...||++++|++ |++++.|+.
T Consensus 134 Rv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 211 (240)
T 2onk_A 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999999999999998654 899999999986 57788999999986 688888874
Q ss_pred C
Q 001293 1094 G 1094 (1106)
Q Consensus 1094 g 1094 (1106)
.
T Consensus 212 ~ 212 (240)
T 2onk_A 212 K 212 (240)
T ss_dssp H
T ss_pred H
Confidence 3
No 57
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=5.8e-39 Score=400.52 Aligned_cols=196 Identities=27% Similarity=0.355 Sum_probs=145.0
Q ss_pred EeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHh-C----CC-----CCC---eeee------EEEEcCccCCcc------
Q 001293 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-G----RK-----TGG---YITG------NITISGYPKKQE------ 937 (1106)
Q Consensus 883 ~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~-g----~~-----~~~---~~~G------~i~i~g~~~~~~------ 937 (1106)
+|+|||++|++|+++||+|+||||||||+++|. | .. ..| ...| .|.+++.++...
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~pa 736 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPA 736 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHH
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccchh
Confidence 489999999999999999999999999999853 2 11 111 1123 356666554210
Q ss_pred ----------------cccceEEEEccCCCCC----------------------C-------------------------
Q 001293 938 ----------------TFARISGYCEQNDIHS----------------------P------------------------- 954 (1106)
Q Consensus 938 ----------------~~~~~~gyv~q~~~~~----------------------~------------------------- 954 (1106)
...+..||++|...+. +
T Consensus 737 ty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 816 (993)
T 2ygr_A 737 TYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKG 816 (993)
T ss_dssp HHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhccC
Confidence 0123456776643221 1
Q ss_pred -------CCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCcc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001293 955 -------FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANP 1026 (1106)
Q Consensus 955 -------~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~-~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p 1026 (1106)
.+|+.|++.|... . .. ...+.++++.++|.. ..+.. +..|||||||||+||++|+.+|
T Consensus 817 ~si~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~lgL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 882 (993)
T 2ygr_A 817 KTVSEVLDMSIEEAAEFFEP------I-AG--VHRYLRTLVDVGLGYVRLGQP-----APTLSGGEAQRVKLASELQKRS 882 (993)
T ss_dssp BCHHHHHSSBHHHHHHHSTT------C-HH--HHHHHHHHHHTTGGGSBTTCC-----GGGSCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHHhhccHHHHHHHhhc------c-hH--HHHHHHHHHHcCCCcccccCc-----cccCCHHHHHHHHHHHHHHhCC
Confidence 2567777765321 1 11 123567899999976 34443 3579999999999999999875
Q ss_pred ---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeEEEEe-----cCCEEEEecCCC
Q 001293 1027 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLG 1094 (1106)
Q Consensus 1027 ---~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-----~Gg~~~~~g~~g 1094 (1106)
+||||||||+|||+.+...|++.|+++++.|.|||+++||++ ..+.||++++|. ++|++++.|+..
T Consensus 883 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gg~~~G~Iv~~G~~~ 956 (993)
T 2ygr_A 883 TGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD--VIKTSDWIIDLGPEGGAGGGTVVAQGTPE 956 (993)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSTTSCSEEEEEECHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEECCCcCCCCCEEEEecCHH
Confidence 999999999999999999999999999888999999999986 347899999995 578999998753
No 58
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=4e-39 Score=355.82 Aligned_cols=205 Identities=27% Similarity=0.392 Sum_probs=172.3
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCC-CCCCCCCH
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHD-NHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 243 (1106)
+++|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.....++.++||+|++ ..++.+||
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcH
Confidence 45999999999999999999999999999999999999998 999999998875332346799999985 56778999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc--cccccccccccc
Q 001293 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD--VCADTMVGDEMI 321 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~vg~~~~ 321 (1106)
+||+.|+.... ... . +....++.+++.+||. +..+..+
T Consensus 97 ~enl~~~~~~~-~~~--------------------~--------------~~~~~~~~~l~~~gl~~~~~~~~~~----- 136 (266)
T 2yz2_A 97 FDEVAFAVKNF-YPD--------------------R--------------DPVPLVKKAMEFVGLDFDSFKDRVP----- 136 (266)
T ss_dssp HHHHHHTTTTT-CTT--------------------S--------------CSHHHHHHHHHHTTCCHHHHTTCCG-----
T ss_pred HHHHHHHHHhc-CCH--------------------H--------------HHHHHHHHHHHHcCcCCcccccCCh-----
Confidence 99999864321 000 0 0112456788999998 7776554
Q ss_pred cCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001293 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1106)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G 401 (1106)
..|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+ . +.+||.++|+..++..+||++++|++|
T Consensus 137 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tii~vtHd~~~~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 137 FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT-L-GKTVILISHDIETVINHVDRVVVLEKG 214 (266)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEECSCCTTTGGGCSEEEEEETT
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998765 3 445555788888888999999999999
Q ss_pred eEEEEcChHHHHH
Q 001293 402 QIVYQGPRELVLE 414 (1106)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1106)
++++.|+++++.+
T Consensus 215 ~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 215 KKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEeCCHHHHhc
Confidence 9999999988754
No 59
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=8.3e-39 Score=350.24 Aligned_cols=206 Identities=22% Similarity=0.339 Sum_probs=173.5
Q ss_pred eeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCC
Q 001293 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1106)
Q Consensus 856 l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1106)
+.++|+++.|+. +..+|+||||+|++|+++||+||||||||||+++|+|... +.+|+|.
T Consensus 5 l~i~~l~~~y~~------------~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~------- 63 (253)
T 2nq2_C 5 LSVENLGFYYQA------------ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIE------- 63 (253)
T ss_dssp EEEEEEEEEETT------------TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--CSEEEEE-------
T ss_pred EEEeeEEEEeCC------------CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEE-------
Confidence 788999887741 2369999999999999999999999999999999999876 4689998
Q ss_pred cccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCC-CCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 001293 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1106)
Q Consensus 936 ~~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~-~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrq 1014 (1106)
+++.+||++|++.+++.+||+||+.|+...... ........++.++++++.++|.++.+..+ .+|||||||
T Consensus 64 ---~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~q 135 (253)
T 2nq2_C 64 ---VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF-----TSLSGGQRQ 135 (253)
T ss_dssp ---ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHH
T ss_pred ---EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-----hhCCHHHHH
Confidence 235699999999888889999999987432211 00112233456889999999998877663 579999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhcCeEEEEecCCEEEEecCC
Q 001293 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1106)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~~~g~~ 1093 (1106)
|++|||||+.+|+||||||||+|||+.++..+++.|+++.++ |+|||++|||++ ++...||++++|++| + ++.|+.
T Consensus 136 rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G-~-~~~g~~ 212 (253)
T 2nq2_C 136 LILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNKQ-N-FKFGET 212 (253)
T ss_dssp HHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEETT-E-EEEEEH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCC-e-EecCCH
Confidence 999999999999999999999999999999999999999776 999999999986 477899999999875 6 787764
No 60
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=7.8e-39 Score=353.46 Aligned_cols=221 Identities=24% Similarity=0.279 Sum_probs=180.1
Q ss_pred eeeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccC
Q 001293 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1106)
Q Consensus 855 ~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1106)
.+.++||++.|+ ++.+|+||||+|++|+++||+||||||||||+++|+|.....+.+|+|.++|.++
T Consensus 20 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 20 MLSIKDLHVSVE-------------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 489999998873 2469999999999999999999999999999999999742236789999999876
Q ss_pred Ccc---cc-cceEEEEccCCCCCCCCCHHHHHHHHHh-hc---CCCCCChHHHHHHHHHHHHHcCCc-cccccccCCCCC
Q 001293 935 KQE---TF-ARISGYCEQNDIHSPFVTIYESLLFSAW-LR---LSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 1005 (1106)
Q Consensus 935 ~~~---~~-~~~~gyv~q~~~~~~~~tv~e~l~~~~~-~r---~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~g~~g~ 1005 (1106)
... .. ++.++|++|++.+++.+||.|++.+... .+ .......++.++.++++++.++|. .+.+..++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 162 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN---- 162 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----
T ss_pred CcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----
Confidence 431 12 2358999999999999999999987541 11 111223334456788999999996 45565421
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHh-cCeEEEEecC
Q 001293 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRG 1084 (1106)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~D~v~~l~~G 1084 (1106)
.+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++|||++ .+... ||++++|++
T Consensus 163 ~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~~- 240 (267)
T 2zu0_C 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ- 240 (267)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEET-
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEEC-
Confidence 249999999999999999999999999999999999999999999998767999999999986 35454 899999986
Q ss_pred CEEEEecCCC
Q 001293 1085 GQEIYVGPLG 1094 (1106)
Q Consensus 1085 g~~~~~g~~g 1094 (1106)
|++++.|+..
T Consensus 241 G~i~~~g~~~ 250 (267)
T 2zu0_C 241 GRIVKSGDFT 250 (267)
T ss_dssp TEEEEEECTT
T ss_pred CEEEEEcCHH
Confidence 6889988864
No 61
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=5.1e-39 Score=356.50 Aligned_cols=208 Identities=28% Similarity=0.313 Sum_probs=168.1
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCC--CCc---ccceEEEEcCCCCCC--
Q 001293 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD--EFV---PQRTAAYISQHDNHI-- 238 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~--~~~---~~~~~~yv~Q~d~~~-- 238 (1106)
++|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++. ... .++.++||+|++.++
T Consensus 35 ~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (279)
T 2ihy_A 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQ 111 (279)
T ss_dssp EEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSC
T ss_pred EEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccC
Confidence 5999999999999999999999999999999999999998 999999999875 332 235799999986432
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccc
Q 001293 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1106)
+.+||+||+.|+..... + .+.. + ..+....++.+++.+||++..+..++
T Consensus 112 ~~ltv~enl~~~~~~~~-~-~~~~--------------~--------------~~~~~~~~~~~l~~~gl~~~~~~~~~- 160 (279)
T 2ihy_A 112 EGERVIDVVISGAFKSI-G-VYQD--------------I--------------DDEIRNEAHQLLKLVGMSAKAQQYIG- 160 (279)
T ss_dssp TTSBHHHHHHTTC-------------------------C--------------CHHHHHHHHHHHHHTTCGGGTTSBGG-
T ss_pred CCCCHHHHHHhhhhhcc-c-cccC--------------C--------------cHHHHHHHHHHHHHcCChhHhcCChh-
Confidence 35699999998632100 0 0000 0 00112346778999999887776554
Q ss_pred ccccCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEE-EEEecChhHHHhhcCeEEE
Q 001293 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV-ISLLQPAPETYDLFDDIIL 397 (1106)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~v-i~i~q~~~~~~~~~D~iil 397 (1106)
.|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++... +.|+. +.++|+..++.++||+|++
T Consensus 161 ----~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~~ 235 (279)
T 2ihy_A 161 ----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKILL 235 (279)
T ss_dssp ----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEEE
T ss_pred ----hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEEE
Confidence 69999999999999999999999999999999999999999999988654 55651 5578888888899999999
Q ss_pred EcCCeEEEEcChHHH
Q 001293 398 LSDGQIVYQGPRELV 412 (1106)
Q Consensus 398 L~~G~iv~~G~~~~~ 412 (1106)
|++|++++.|+++++
T Consensus 236 l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 236 LKDGQSIQQGAVEDI 250 (279)
T ss_dssp EETTEEEEEEEHHHH
T ss_pred EECCEEEEECCHHHH
Confidence 999999999998876
No 62
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=5.5e-39 Score=350.36 Aligned_cols=203 Identities=21% Similarity=0.352 Sum_probs=174.7
Q ss_pred eeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCC
Q 001293 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1106)
Q Consensus 856 l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1106)
++++|+++. .+|+||||+|++|++++|+||||||||||+++|+|... +. |+|.++|.+..
T Consensus 5 l~~~~l~~~-----------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~ 64 (249)
T 2qi9_C 5 MQLQDVAES-----------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLE 64 (249)
T ss_dssp EEEEEEEET-----------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGG
T ss_pred EEEEceEEE-----------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECC
Confidence 677888765 26999999999999999999999999999999999876 46 99999998764
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHH
Q 001293 936 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1012 (1106)
Q Consensus 936 ~---~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGq 1012 (1106)
. ..+++.+||++|++.+++.+||+||+.|+.. . ... ++.++++++.+++.++.+.. +.+|||||
T Consensus 65 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq 131 (249)
T 2qi9_C 65 AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH---D-KTR----TELLNDVAGALALDDKLGRS-----TNQLSGGE 131 (249)
T ss_dssp GSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS---S-TTC----HHHHHHHHHHTTCGGGTTSB-----GGGCCHHH
T ss_pred cCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhc---c-CCc----HHHHHHHHHHcCChhHhcCC-----hhhCCHHH
Confidence 2 2345679999999988888999999987521 1 111 34578999999998887765 35799999
Q ss_pred HHHHHHHHHHhcCCC-------eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeEEEEecCC
Q 001293 1013 RKRLTIAVELVANPS-------IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1106)
Q Consensus 1013 rqrl~iA~aL~~~p~-------illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg 1085 (1106)
|||++|||||+.+|+ +|||||||+|||+.++..+++.|+++.++|+|||++|||++ .+...||++++|++ |
T Consensus 132 ~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G 209 (249)
T 2qi9_C 132 WQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-G 209 (249)
T ss_dssp HHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-T
T ss_pred HHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 999999999999999 99999999999999999999999999777999999999986 46789999999986 5
Q ss_pred EEEEecCC
Q 001293 1086 QEIYVGPL 1093 (1106)
Q Consensus 1086 ~~~~~g~~ 1093 (1106)
++++.|+.
T Consensus 210 ~i~~~g~~ 217 (249)
T 2qi9_C 210 KMLASGRR 217 (249)
T ss_dssp EEEEEEEH
T ss_pred EEEEeCCH
Confidence 88888864
No 63
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=8e-39 Score=349.30 Aligned_cols=212 Identities=26% Similarity=0.421 Sum_probs=175.6
Q ss_pred ceeeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCcc
Q 001293 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1106)
Q Consensus 854 ~~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1106)
+.++++||+++|+. ++..+|+||||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 6 ~~~~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~ 72 (247)
T 2ff7_A 6 HDITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHD 72 (247)
T ss_dssp EEEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CceeEEEEEEEeCC-----------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEE
Confidence 46899999988831 12469999999999999999999999999999999999876 468999999988
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCcccccccc-------CCC
Q 001293 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV-------GLP 1003 (1106)
Q Consensus 934 ~~~---~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-------g~~ 1003 (1106)
+.. ..+++.+||++|++.+++ .||+||+.|+. .... ++.++++++.+++.++.+..+ +.+
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~-----~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~ 142 (247)
T 2ff7_A 73 LALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN-----PGMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQ 142 (247)
T ss_dssp TTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTC-----TTCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTT
T ss_pred hhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccC-----CCCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCC
Confidence 643 234567999999998876 59999998752 1111 234677888888876655432 222
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeEEEEec
Q 001293 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1106)
Q Consensus 1004 g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1083 (1106)
+.+|||||||||+|||||+.+|++|||||||+|||+.++..|++.|+++. +|+|||++||+++. + +.||++++|++
T Consensus 143 -~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~ 218 (247)
T 2ff7_A 143 -GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEK 218 (247)
T ss_dssp -TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEET
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEEC
Confidence 46899999999999999999999999999999999999999999999985 69999999999873 4 56999999986
Q ss_pred CCEEEEecCC
Q 001293 1084 GGQEIYVGPL 1093 (1106)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1106)
|++++.|+.
T Consensus 219 -G~i~~~g~~ 227 (247)
T 2ff7_A 219 -GKIVEQGKH 227 (247)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 688888874
No 64
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.2e-38 Score=347.90 Aligned_cols=200 Identities=26% Similarity=0.400 Sum_probs=160.8
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcc---cceEEEEcCCCCCCCCC
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
+++|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 97 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-R 97 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-S
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-c
Confidence 35999999999999999999999999999999999999998 9999999998865432 357999999987775 6
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccc-------ccc
Q 001293 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC-------ADT 314 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-------~dt 314 (1106)
||+||+.|+.. . ...+ .++.+++.+|+.+. .++
T Consensus 98 tv~enl~~~~~--~--~~~~------------------------------------~~~~~l~~~~l~~~~~~~~~gl~~ 137 (247)
T 2ff7_A 98 SIIDNISLANP--G--MSVE------------------------------------KVIYAAKLAGAHDFISELREGYNT 137 (247)
T ss_dssp BHHHHHTTTCT--T--CCHH------------------------------------HHHHHHHHHTCHHHHHTSTTGGGC
T ss_pred cHHHHHhccCC--C--CCHH------------------------------------HHHHHHHHhChHHHHHhCcchhhh
Confidence 99999987521 0 0000 11223444444332 234
Q ss_pred ccccccccCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001293 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1106)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1106)
.++. .+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++ . .+.|+ |.++|+...+ ..||+
T Consensus 138 ~~~~-~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~-~-~g~tv-iivtH~~~~~-~~~d~ 212 (247)
T 2ff7_A 138 IVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-C-KGRTV-IIIAHRLSTV-KNADR 212 (247)
T ss_dssp BCST-TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHH-H-TTSEE-EEECSSGGGG-TTSSE
T ss_pred hhhC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-c-CCCEE-EEEeCCHHHH-HhCCE
Confidence 4443 35679999999999999999999999999999999999999999999987 3 34454 5567776665 45999
Q ss_pred EEEEcCCeEEEEcChHHHH
Q 001293 395 IILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 395 iilL~~G~iv~~G~~~~~~ 413 (1106)
|++|++|++++.|+++++.
T Consensus 213 v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 213 IIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998874
No 65
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=4.3e-39 Score=356.05 Aligned_cols=214 Identities=21% Similarity=0.290 Sum_probs=172.3
Q ss_pred eeeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccC
Q 001293 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1106)
Q Consensus 855 ~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1106)
.+.++||++.|+.. +...+|+||||+|++|+++||+||||||||||+++|+|... +..|+|.++|.++
T Consensus 16 ~l~~~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i 83 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH----------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPL 83 (271)
T ss_dssp CEEEEEEEECCTTC----------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEc
Confidence 58999999888520 11358999999999999999999999999999999999876 4689999999876
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHH-----HHHHHHHHHHHc--CCccccccccCCCC
Q 001293 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSET-----RKMFIDEVMELV--ELNPLRQSLVGLPG 1004 (1106)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~-----~~~~v~~~l~~~--~l~~~~~~~~g~~g 1004 (1106)
.. ..+++.+||++|++.+++ .||+||+.|+... . ...+. ....++++++.+ ++....+..
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~--~--~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~----- 153 (271)
T 2ixe_A 84 VQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTR--T--PTMEEITAVAMESGAHDFISGFPQGYDTEVGET----- 153 (271)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSS--C--CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGG-----
T ss_pred ccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhccc--C--ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCC-----
Confidence 43 234567999999998876 5999999885321 1 11011 112345567777 566655554
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhcCeEEEEec
Q 001293 1005 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1106)
Q Consensus 1005 ~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1083 (1106)
+.+|||||||||+|||||+.+|+||||||||+|||+.++..|++.|+++.+ .|+|||++|||++ ..+.||++++|++
T Consensus 154 ~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~--~~~~~d~v~~l~~ 231 (271)
T 2ixe_A 154 GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLKE 231 (271)
T ss_dssp GTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH--HHTTCSEEEEEET
T ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH--HHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999864 4899999999986 3356999999986
Q ss_pred CCEEEEecCC
Q 001293 1084 GGQEIYVGPL 1093 (1106)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1106)
|+++..|+.
T Consensus 232 -G~i~~~g~~ 240 (271)
T 2ixe_A 232 -GSVCEQGTH 240 (271)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 588888874
No 66
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.6e-38 Score=348.04 Aligned_cols=205 Identities=23% Similarity=0.286 Sum_probs=163.0
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCC--CCCCCCceeEEEEcCccCCCCcc----cceEEEEcCCCCCC
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK--LDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHI 238 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~--~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 238 (1106)
+++|+|||++|++|++++|+|||||||||||++|+|+ ++|+ +|+|.++|.++..... ++.++||+|++.++
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 92 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSPDERARKGLFLAFQYPVEV 92 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-C
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCHHHHHhCcEEEeccCCccc
Confidence 3599999999999999999999999999999999998 6777 9999999998865432 23489999999999
Q ss_pred CCCCHHHHHHHHHHh-cCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCC-cccccccc
Q 001293 239 GEMTVRETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL-DVCADTMV 316 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL-~~~~dt~v 316 (1106)
+.+||+||+.++... .+.... ..+....++.+++.+|| .+..++.+
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~l~~~gl~~~~~~~~~ 140 (250)
T 2d2e_A 93 PGVTIANFLRLALQAKLGREVG--------------------------------VAEFWTKVKKALELLDWDESYLSRYL 140 (250)
T ss_dssp CSCBHHHHHHHHHHHHHTSCCC--------------------------------HHHHHHHHHHHHHHHTCCGGGGGSBT
T ss_pred cCCCHHHHHHHHHHhhccccCC--------------------------------HHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 999999999986531 110000 00012245678999999 46666554
Q ss_pred ccccccC-CChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhh-cCe
Q 001293 317 GDEMIRG-ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-FDD 394 (1106)
Q Consensus 317 g~~~~~~-LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~-~D~ 394 (1106)
.. |||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+ . +++|+.++|+..++..+ ||+
T Consensus 141 -----~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tvi~vtHd~~~~~~~~~d~ 213 (250)
T 2d2e_A 141 -----NEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-P-NFGALVITHYQRILNYIQPDK 213 (250)
T ss_dssp -----TCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-T-TCEEEEECSSSGGGGTSCCSE
T ss_pred -----ccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhcCCE
Confidence 45 999999999999999999999999999999999999999999998743 3 45555678888888777 599
Q ss_pred EEEEcCCeEEEEcChHH
Q 001293 395 IILLSDGQIVYQGPREL 411 (1106)
Q Consensus 395 iilL~~G~iv~~G~~~~ 411 (1106)
|++|++|++++.|+++.
T Consensus 214 v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 214 VHVMMDGRVVATGGPEL 230 (250)
T ss_dssp EEEEETTEEEEEESHHH
T ss_pred EEEEECCEEEEEeCHHH
Confidence 99999999999999873
No 67
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=5.1e-39 Score=393.43 Aligned_cols=258 Identities=23% Similarity=0.393 Sum_probs=196.5
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHHHhhh
Q 001293 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1106)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1106)
.++....++|+.++++.+++ ..+..+....+....+++++||++.+..
T Consensus 304 ~~~~~~s~~ri~~~l~~~~~-----~~~~~~~~~~~~~~~~i~~~~v~~~y~~--------------------------- 351 (578)
T 4a82_A 304 LTQSFASMDRVFQLIDEDYD-----IKNGVGAQPIEIKQGRIDIDHVSFQYND--------------------------- 351 (578)
T ss_dssp HHHHHHHHHHHHHHHTCCCS-----SCCCTTCCCCCCCSCCEEEEEEEECSCS---------------------------
T ss_pred HHHHHHHHHHHHHHHcCCCc-----ccCCCCccccCCCCCeEEEEEEEEEcCC---------------------------
Confidence 46778888899888876654 1111111112223457999999987631
Q ss_pred cCCccccceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcc---cceEEEEcCC
Q 001293 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1106)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~ 234 (1106)
...++|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|+
T Consensus 352 -----~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~ 423 (578)
T 4a82_A 352 -----NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQD 423 (578)
T ss_dssp -----SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSS
T ss_pred -----CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCC
Confidence 1235999999999999999999999999999999999999998 9999999999876543 4679999998
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccc
Q 001293 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1106)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1106)
+.+++ .||+||+.|+.. ....+...++++. .++ +.. ...+++..||
T Consensus 424 ~~l~~-~tv~eni~~~~~----~~~~~~~~~~~~~---~~~------------------------~~~--~~~lp~g~~t 469 (578)
T 4a82_A 424 NILFS-DTVKENILLGRP----TATDEEVVEAAKM---ANA------------------------HDF--IMNLPQGYDT 469 (578)
T ss_dssp CCCCS-SBHHHHHGGGCS----SCCHHHHHHHHHH---TTC------------------------HHH--HHTSTTGGGC
T ss_pred CccCc-ccHHHHHhcCCC----CCCHHHHHHHHHH---hCc------------------------HHH--HHhCcchhhh
Confidence 87775 499999988631 1111111221111 100 011 2356778899
Q ss_pred ccccccccCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001293 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1106)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1106)
.+|+++. .|||||||||+|||||+.+|++++|||||||||+.++..+.+.|+++. .++|+|+ ++|+...+ +.||+
T Consensus 470 ~~~~~g~-~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~-itH~l~~~-~~~d~ 544 (578)
T 4a82_A 470 EVGERGV-KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLI-VAHRLSTI-THADK 544 (578)
T ss_dssp BCCGGGT-TSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEE-ECSSGGGT-TTCSE
T ss_pred hhccCCC-cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEE-EecCHHHH-HcCCE
Confidence 9997654 699999999999999999999999999999999999999999998763 3455544 67776665 56999
Q ss_pred EEEEcCCeEEEEcChHHHHH
Q 001293 395 IILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1106)
|++|++|+++++|+++++.+
T Consensus 545 i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 545 IVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999864
No 68
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=3.3e-39 Score=343.75 Aligned_cols=197 Identities=20% Similarity=0.280 Sum_probs=169.7
Q ss_pred eeeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccC
Q 001293 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1106)
Q Consensus 855 ~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1106)
.++++|+++.|+ + .+|+||||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 10 ~l~~~~ls~~y~-------------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 73 (214)
T 1sgw_A 10 KLEIRDLSVGYD-------------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPI 73 (214)
T ss_dssp EEEEEEEEEESS-------------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEeC-------------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEh
Confidence 488999988873 3 69999999999999999999999999999999999876 4689999999876
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 001293 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1106)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrq 1014 (1106)
. .+++.+||++|++.+++.+||+||+.|+...+.. .. + ++.++++++.+++.+. +.. +.+|||||||
T Consensus 74 ~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~--~--~~~~~~~l~~~gl~~~-~~~-----~~~LSgGqkq 140 (214)
T 1sgw_A 74 T--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KV--N--KNEIMDALESVEVLDL-KKK-----LGELSQGTIR 140 (214)
T ss_dssp G--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CC--C--HHHHHHHHHHTTCCCT-TSB-----GGGSCHHHHH
T ss_pred h--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-ch--H--HHHHHHHHHHcCCCcC-CCC-----hhhCCHHHHH
Confidence 4 3567799999999988889999999987544321 11 1 3457889999999877 554 3579999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeEEEE
Q 001293 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1106)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l 1081 (1106)
|++|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ ++...+|+++++
T Consensus 141 rv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~ 206 (214)
T 1sgw_A 141 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKY 206 (214)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGG
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEe
Confidence 999999999999999999999999999999999999998766899999999998 477778888765
No 69
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=2.1e-38 Score=350.50 Aligned_cols=209 Identities=22% Similarity=0.370 Sum_probs=164.6
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcc---cceEEEEcCCCCCCCCC
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
+++|+|||+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-R 107 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHHHhccEEEEecCCcccc-c
Confidence 35999999999999999999999999999999999999998 9999999998754332 357999999987776 6
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHc--CCccccccccccc
Q 001293 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL--GLDVCADTMVGDE 319 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~ 319 (1106)
||+|||.|+.... .. .+...+... ...++.+++.+ ||+...+.
T Consensus 108 tv~enl~~~~~~~--~~-~~~~~~~~~---------------------------~~~~~~~l~~l~~gl~~~~~~----- 152 (271)
T 2ixe_A 108 SFRENIAYGLTRT--PT-MEEITAVAM---------------------------ESGAHDFISGFPQGYDTEVGE----- 152 (271)
T ss_dssp BHHHHHHTTCSSC--CC-HHHHHHHHH---------------------------HHTCHHHHHHSTTGGGSBCCG-----
T ss_pred cHHHHHhhhcccC--Ch-HHHHHHHHH---------------------------HHhHHHHHHhhhcchhhhhcC-----
Confidence 9999999864211 00 010011000 01234566777 66554443
Q ss_pred cccCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEc
Q 001293 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1106)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~ 399 (1106)
.+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.... +++||.++|+...+. .||+|++|+
T Consensus 153 ~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-g~tviivtHd~~~~~-~~d~v~~l~ 230 (271)
T 2ixe_A 153 TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWA-SRTVLLITQQLSLAE-RAHHILFLK 230 (271)
T ss_dssp GGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTT-TSEEEEECSCHHHHT-TCSEEEEEE
T ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhc-CCEEEEEeCCHHHHH-hCCEEEEEE
Confidence 345799999999999999999999999999999999999999999999864322 445555778877665 599999999
Q ss_pred CCeEEEEcChHHHHH
Q 001293 400 DGQIVYQGPRELVLE 414 (1106)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1106)
+|++++.|+++++..
T Consensus 231 ~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 231 EGSVCEQGTHLQLME 245 (271)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999998754
No 70
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1e-37 Score=341.52 Aligned_cols=197 Identities=16% Similarity=0.219 Sum_probs=164.5
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHH
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
+++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.+ ++.++||+|++.+++.+||+
T Consensus 18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~----------~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV----------YQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE----------CSCEEEECSCCCCSSCCBHH
T ss_pred CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE----------eccEEEEcCCCccCCCCCHH
Confidence 35999999999999999999999999999999999999998 999982 35699999999888899999
Q ss_pred HHHHHHHHhc-CCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccC
Q 001293 245 ETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1106)
Q Consensus 245 E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1106)
||+.|+.... +..... . ......++.+++.+||.+..+..+ ..
T Consensus 85 enl~~~~~~~~~~~~~~---~----------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 128 (253)
T 2nq2_C 85 DIVLMGRSTHINTFAKP---K----------------------------SHDYQVAMQALDYLNLTHLAKREF-----TS 128 (253)
T ss_dssp HHHHGGGGGGSCTTCCC---C----------------------------HHHHHHHHHHHHHTTCGGGTTSBG-----GG
T ss_pred HHHHHhhhhhcccccCC---C----------------------------HHHHHHHHHHHHHcCChHHhcCCh-----hh
Confidence 9999864321 100000 0 001124567899999988777554 46
Q ss_pred CChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001293 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~i 403 (1106)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+ ..+++|+.++|+..++.++||+|++|++|+
T Consensus 129 LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~- 206 (253)
T 2nq2_C 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQ-SQNMTVVFTTHQPNQVVAIANKTLLLNKQN- 206 (253)
T ss_dssp SCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHH-TSCCEEEEEESCHHHHHHHCSEEEEEETTE-
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhCCEEEEEeCCe-
Confidence 999999999999999999999999999999999999999999998765 324455567888889999999999999999
Q ss_pred EEEcChHHH
Q 001293 404 VYQGPRELV 412 (1106)
Q Consensus 404 v~~G~~~~~ 412 (1106)
++.|+++++
T Consensus 207 ~~~g~~~~~ 215 (253)
T 2nq2_C 207 FKFGETRNI 215 (253)
T ss_dssp EEEEEHHHH
T ss_pred EecCCHHHH
Confidence 999998876
No 71
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=8.6e-38 Score=345.15 Aligned_cols=220 Identities=24% Similarity=0.286 Sum_probs=171.5
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC--CCCCCceeEEEEcCccCCCCcc----cceEEEEcCCCCCCC
Q 001293 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL--DPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIG 239 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~ 239 (1106)
++|+|||++|++|++++|+|||||||||||++|+|++ +|+ +|+|.++|.++..... ++.++||+|++.+++
T Consensus 34 ~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~ 110 (267)
T 2zu0_C 34 AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIP 110 (267)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCT
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCcCCHHHHhhCCEEEEccCccccc
Confidence 5999999999999999999999999999999999994 566 9999999998754432 234999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc-ccccccccc
Q 001293 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGD 318 (1106)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~ 318 (1106)
.+||+||+.+...... . ..+. +... ..+....++++++.+||+ ...+..++
T Consensus 111 ~~tv~e~~~~~~~~~~-------------~--~~~~-~~~~-----------~~~~~~~~~~~l~~~gl~~~~~~~~~~- 162 (267)
T 2zu0_C 111 GVSNQFFLQTALNAVR-------------S--YRGQ-ETLD-----------RFDFQDLMEEKIALLKMPEDLLTRSVN- 162 (267)
T ss_dssp TCBHHHHHHHHHHHHH-------------H--GGGC-CCCC-----------HHHHHHHHHHHHHHTTCCTTTTTSBTT-
T ss_pred cccHHHHHHHHHHhhh-------------h--hhcc-ccCC-----------HHHHHHHHHHHHHHcCCChhHhcCCcc-
Confidence 9999999987542100 0 0000 0000 001123467789999996 45554432
Q ss_pred ccccCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhh-cCeEEE
Q 001293 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-FDDIIL 397 (1106)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~-~D~iil 397 (1106)
..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.. . +++|+.++|+..++..+ ||+|++
T Consensus 163 ---~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tviivtHd~~~~~~~~~d~v~~ 237 (267)
T 2zu0_C 163 ---VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-G-KRSFIIVTHYQRILDYIKPDYVHV 237 (267)
T ss_dssp ---TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-S-SCEEEEECSSGGGGGTSCCSEEEE
T ss_pred ---cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c-CCEEEEEeeCHHHHHhhcCCEEEE
Confidence 14999999999999999999999999999999999999999999988642 3 45566678888777776 899999
Q ss_pred EcCCeEEEEcChHHHHHHHHhCCCC
Q 001293 398 LSDGQIVYQGPRELVLEFFASMGFR 422 (1106)
Q Consensus 398 L~~G~iv~~G~~~~~~~~f~~~G~~ 422 (1106)
|++|++++.|+++++.. ++..||.
T Consensus 238 l~~G~i~~~g~~~~~~~-~~~~~~~ 261 (267)
T 2zu0_C 238 LYQGRIVKSGDFTLVKQ-LEEQGYG 261 (267)
T ss_dssp EETTEEEEEECTTHHHH-HHTTTCT
T ss_pred EECCEEEEEcCHHHHhh-hhhcchh
Confidence 99999999999988753 4555543
No 72
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=9.2e-39 Score=391.28 Aligned_cols=258 Identities=22% Similarity=0.338 Sum_probs=194.3
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHHHhhh
Q 001293 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1106)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1106)
.++....++|+.++++..++ ..+..+....+.+...++++|+++.+..
T Consensus 306 ~~~~~~s~~ri~~~l~~~~~-----~~~~~~~~~~~~~~~~i~~~~v~~~y~~--------------------------- 353 (587)
T 3qf4_A 306 IVRASASAKRVLEVLNEKPA-----IEEADNALALPNVEGSVSFENVEFRYFE--------------------------- 353 (587)
T ss_dssp HHHHHHHHHHHHHHHHCCCS-----CCCCTTCBCCSCCCCCEEEEEEEECSSS---------------------------
T ss_pred HHHHHHHHHHHHHHHcCCCc-----cCCCCCccccCCCCCcEEEEEEEEEcCC---------------------------
Confidence 45667778888877765443 1110011112223457999999988621
Q ss_pred cCCccccceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcc---cceEEEEcCC
Q 001293 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1106)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~ 234 (1106)
...++|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|+
T Consensus 354 -----~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~ 425 (587)
T 3qf4_A 354 -----NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQE 425 (587)
T ss_dssp -----SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSS
T ss_pred -----CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCC
Confidence 1235999999999999999999999999999999999999998 9999999999876543 4679999998
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccc
Q 001293 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1106)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1106)
+.+++ .||+||+.++... ...+...++.+ ..++ +.. ...+++..||
T Consensus 426 ~~lf~-~tv~eni~~~~~~----~~~~~~~~~~~---~~~~------------------------~~~--i~~l~~g~~~ 471 (587)
T 3qf4_A 426 TVLFS-GTIKENLKWGRED----ATDDEIVEAAK---IAQI------------------------HDF--IISLPEGYDS 471 (587)
T ss_dssp CCCCS-EEHHHHHTTTCSS----CCHHHHHHHHH---HTTC------------------------HHH--HHTSSSGGGC
T ss_pred CcCcC-ccHHHHHhccCCC----CCHHHHHHHHH---HhCc------------------------HHH--HHhcccchhh
Confidence 87775 5999999876421 11111111111 1110 111 2256778899
Q ss_pred ccccccccCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001293 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1106)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1106)
.+|+.+ ..||||||||++|||||+.+|++|+||||||+||+.++..|.+.|+++. .++|+ +.++|+...+ ..||+
T Consensus 472 ~~~~~~-~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tv-i~itH~l~~~-~~~d~ 546 (587)
T 3qf4_A 472 RVERGG-RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTT-FIITQKIPTA-LLADK 546 (587)
T ss_dssp EECSSS-CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEE-EEEESCHHHH-TTSSE
T ss_pred HhcCCC-CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEE-EEEecChHHH-HhCCE
Confidence 998764 4699999999999999999999999999999999999999999998863 34454 4466766554 68999
Q ss_pred EEEEcCCeEEEEcChHHHHH
Q 001293 395 IILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1106)
|++|++|+++++|+++++.+
T Consensus 547 i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 547 ILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999865
No 73
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=9.9e-39 Score=348.28 Aligned_cols=210 Identities=27% Similarity=0.409 Sum_probs=173.4
Q ss_pred eeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCC
Q 001293 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1106)
Q Consensus 856 l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1106)
+.++|+++.|+ ++..+|+||||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (243)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEEeC------------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhh
Confidence 56888988873 12358999999999999999999999999999999999876 46899999998764
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCcccccccc-------CCCCC
Q 001293 936 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV-------GLPGV 1005 (1106)
Q Consensus 936 ~---~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-------g~~g~ 1005 (1106)
. ..+++.+||++|++.+++ .||+||+.|+.. .... ++.++++++.+++.++.+..+ +. .+
T Consensus 68 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~----~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~ 137 (243)
T 1mv5_A 68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE----GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGE-RG 137 (243)
T ss_dssp TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT----SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEEST-TS
T ss_pred hCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc----CCCC----HHHHHHHHHHhChHHHHHhCccchhchhcc-Cc
Confidence 3 235667999999998876 599999987521 1112 234678899999987765442 12 24
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeEEEEecCC
Q 001293 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1106)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg 1085 (1106)
.+||||||||++|||||+.+|+||+|||||+|||+.++..+++.|+++. +|+|||++||+++ .+ +.||++++|++ |
T Consensus 138 ~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~-G 213 (243)
T 1mv5_A 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEK-G 213 (243)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEET-T
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEEEEC-C
Confidence 6899999999999999999999999999999999999999999999987 6999999999986 34 56999999986 5
Q ss_pred EEEEecCC
Q 001293 1086 QEIYVGPL 1093 (1106)
Q Consensus 1086 ~~~~~g~~ 1093 (1106)
++++.|+.
T Consensus 214 ~i~~~g~~ 221 (243)
T 1mv5_A 214 QITGSGKH 221 (243)
T ss_dssp EECCCSCH
T ss_pred EEEEeCCH
Confidence 88887764
No 74
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2.7e-38 Score=344.77 Aligned_cols=202 Identities=24% Similarity=0.337 Sum_probs=163.7
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCc---ccceEEEEcCCCCCCCCC
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 241 (1106)
+++|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++||+|++.+++ .
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~ 90 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-G 90 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-E
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-c
Confidence 35999999999999999999999999999999999999998 999999999876533 2467999999987776 6
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccc-------c
Q 001293 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD-------T 314 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d-------t 314 (1106)
||+||+.|+... . .. ...++.+++.+|+.+..+ +
T Consensus 91 tv~enl~~~~~~-~--~~------------------------------------~~~~~~~l~~~~l~~~~~~~~~gl~~ 131 (243)
T 1mv5_A 91 TIRENLTYGLEG-D--YT------------------------------------DEDLWQVLDLAFARSFVENMPDQLNT 131 (243)
T ss_dssp EHHHHTTSCTTS-C--SC------------------------------------HHHHHHHHHHHTCTTTTTSSTTGGGC
T ss_pred cHHHHHhhhccC-C--CC------------------------------------HHHHHHHHHHhChHHHHHhCccchhc
Confidence 999999875211 0 00 011344566677765443 3
Q ss_pred ccccccccCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001293 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1106)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1106)
.++ +.+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. .+.| |+.++|+...+ ..||+
T Consensus 132 ~~~-~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~~~t-vi~vtH~~~~~-~~~d~ 206 (243)
T 1mv5_A 132 EVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRT-TLVIAHRLSTI-VDADK 206 (243)
T ss_dssp EES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSE-EEEECCSHHHH-HHCSE
T ss_pred hhc-cCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc--CCCE-EEEEeCChHHH-HhCCE
Confidence 333 3456899999999999999999999999999999999999999999999874 3445 45567776665 56999
Q ss_pred EEEEcCCeEEEEcChHHHHH
Q 001293 395 IILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1106)
|++|++|++++.|+++++..
T Consensus 207 v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 207 IYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp EEEEETTEECCCSCHHHHHH
T ss_pred EEEEECCEEEEeCCHHHHHh
Confidence 99999999999999988753
No 75
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.9e-37 Score=340.71 Aligned_cols=194 Identities=20% Similarity=0.204 Sum_probs=164.8
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEE-EEcCCCCCCCCCCH
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAA-YISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~-yv~Q~d~~~~~lTV 243 (1106)
+++|+|+|++++ |++++|+|||||||||||++|+|.+ |+ +|+|.++|.++.....++.++ ||+|++.+ .+||
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv 90 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTV 90 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcH
Confidence 359999999999 9999999999999999999999999 98 999999998764321246799 99998766 8999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc-ccccccccccccc
Q 001293 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGDEMIR 322 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~ 322 (1106)
+||+.|+..... . ....++.+++.+||+ +..+..+ .
T Consensus 91 ~enl~~~~~~~~--~------------------------------------~~~~~~~~l~~~gl~~~~~~~~~-----~ 127 (263)
T 2pjz_A 91 NDIVYLYEELKG--L------------------------------------DRDLFLEMLKALKLGEEILRRKL-----Y 127 (263)
T ss_dssp HHHHHHHHHHTC--C------------------------------------CHHHHHHHHHHTTCCGGGGGSBG-----G
T ss_pred HHHHHHhhhhcc--h------------------------------------HHHHHHHHHHHcCCChhHhcCCh-----h
Confidence 999998653210 0 012356678899998 7666554 4
Q ss_pred CCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcC-eEEEEcCC
Q 001293 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD-DIILLSDG 401 (1106)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D-~iilL~~G 401 (1106)
.|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++. . +|+.++|+..++.++|| ++++|++|
T Consensus 128 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~---~--tviivtHd~~~~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG---K--EGILVTHELDMLNLYKEYKAYFLVGN 202 (263)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC---S--EEEEEESCGGGGGGCTTSEEEEEETT
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc---C--cEEEEEcCHHHHHHhcCceEEEEECC
Confidence 699999999999999999999999999999999999999999998742 2 55567888888899999 99999999
Q ss_pred eEEEEcChHHHH
Q 001293 402 QIVYQGPRELVL 413 (1106)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1106)
++++.|+++++.
T Consensus 203 ~i~~~g~~~~l~ 214 (263)
T 2pjz_A 203 RLQGPISVSELL 214 (263)
T ss_dssp EEEEEEEHHHHH
T ss_pred EEEEecCHHHHH
Confidence 999999998875
No 76
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=2.2e-37 Score=340.54 Aligned_cols=200 Identities=23% Similarity=0.329 Sum_probs=160.4
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcc---cceEEEEcCCCCCCCCC
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
+++|+|||+.|++|++++|+|||||||||||++|+|++++ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-E 107 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-E
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-c
Confidence 3599999999999999999999999999999999999874 7999999998754332 357999999987775 6
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHc-------CCcccccc
Q 001293 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-------GLDVCADT 314 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-------gL~~~~dt 314 (1106)
||+||+.|+.. . ...+ + +...++.+ ++++..||
T Consensus 108 tv~enl~~~~~-~---~~~~---~---------------------------------~~~~l~~~~l~~~~~~l~~~~~~ 147 (260)
T 2ghi_A 108 TIKYNILYGKL-D---ATDE---E---------------------------------VIKATKSAQLYDFIEALPKKWDT 147 (260)
T ss_dssp EHHHHHHTTCT-T---CCHH---H---------------------------------HHHHHHHTTCHHHHHTSTTGGGC
T ss_pred CHHHHHhccCC-C---CCHH---H---------------------------------HHHHHHHhCCHHHHHhccccccc
Confidence 99999988531 0 0000 0 11122222 45566677
Q ss_pred ccccccccCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001293 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1106)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1106)
.++. .+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++. .+.| |+.++|+...+ ..||+
T Consensus 148 ~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~--~~~t-viivtH~~~~~-~~~d~ 222 (260)
T 2ghi_A 148 IVGN-KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR--KNRT-LIIIAHRLSTI-SSAES 222 (260)
T ss_dssp EESS-SSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT--TTSE-EEEECSSGGGS-TTCSE
T ss_pred cccC-CcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCE-EEEEcCCHHHH-HhCCE
Confidence 7764 456899999999999999999999999999999999999999999999874 3444 55567776665 46999
Q ss_pred EEEEcCCeEEEEcChHHHHH
Q 001293 395 IILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1106)
|++|++|++++.|+++++..
T Consensus 223 i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 223 IILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998754
No 77
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.7e-37 Score=338.57 Aligned_cols=197 Identities=24% Similarity=0.338 Sum_probs=168.2
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcc---cceEEEEcCCCCCCCCCC
Q 001293 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1106)
++|+|+|+.+++|++++|+|||||||||||++|+|.++| .|+|.++|.++..... ++.++||+|++.+++.+|
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p----~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCB
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC----CeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCc
Confidence 389999999999999999999999999999999999987 3999999998754332 357999999988899999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccc
Q 001293 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1106)
|+||+.|+.. ... . ...++.+++.+||++..+..+ .
T Consensus 90 v~e~l~~~~~-~~~----~----------------------------------~~~~~~~l~~~~l~~~~~~~~-----~ 125 (249)
T 2qi9_C 90 VWHYLTLHQH-DKT----R----------------------------------TELLNDVAGALALDDKLGRST-----N 125 (249)
T ss_dssp HHHHHHTTCS-STT----C----------------------------------HHHHHHHHHHTTCGGGTTSBG-----G
T ss_pred HHHHHHHhhc-cCC----c----------------------------------HHHHHHHHHHcCChhHhcCCh-----h
Confidence 9999987521 100 0 113566788999988776554 4
Q ss_pred CCChhhhHHHHHHHHHhcCCc-------cceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001293 323 GISGGQKKRVTTGEMMVGPAL-------ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1106)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~-------vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1106)
.|||||||||+||+||+.+|+ +|||||||+|||+.++..+++.|+++.+ . +++|+.++|+..++.+++|++
T Consensus 126 ~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tviivtHd~~~~~~~~d~v 203 (249)
T 2qi9_C 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ-Q-GLAIVMSSHDLNHTLRHAHRA 203 (249)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEECSCHHHHHHHCSEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEE
Confidence 699999999999999999999 9999999999999999999999998764 3 445566788888899999999
Q ss_pred EEEcCCeEEEEcChHHH
Q 001293 396 ILLSDGQIVYQGPRELV 412 (1106)
Q Consensus 396 ilL~~G~iv~~G~~~~~ 412 (1106)
++|++|++++.|+++++
T Consensus 204 ~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 204 WLLKGGKMLASGRREEV 220 (249)
T ss_dssp EEEETTEEEEEEEHHHH
T ss_pred EEEECCEEEEeCCHHHH
Confidence 99999999999998876
No 78
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.5e-37 Score=381.96 Aligned_cols=255 Identities=22% Similarity=0.339 Sum_probs=191.4
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcce-EEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHHHhh
Q 001293 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVE-VRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLR 156 (1106)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 156 (1106)
.++....++|+.++++.+++ ..+.......+.+..+ ++++||++.+..
T Consensus 305 ~~~~~~s~~ri~~~l~~~~~-----~~~~~~~~~~~~~~~~~i~~~~v~~~y~~-------------------------- 353 (595)
T 2yl4_A 305 LMKGLGAGGRLWELLEREPK-----LPFNEGVILNEKSFQGALEFKNVHFAYPA-------------------------- 353 (595)
T ss_dssp HHHHHHHHHHHHHHHTCCCS-----SCSSCSBCCCTTTCCCCEEEEEEEEECSS--------------------------
T ss_pred HHHHHHHHHHHHHHHcCCCc-----cCCCCCCCCCcCCCCCeEEEEEEEEEeCC--------------------------
Confidence 45667778888887765443 0000000000112346 999999998721
Q ss_pred hcCCccccceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcc---cceEEEEcC
Q 001293 157 IIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQ 233 (1106)
Q Consensus 157 ~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q 233 (1106)
+ .+.++|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|
T Consensus 354 ----~-~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~Q 425 (595)
T 2yl4_A 354 ----R-PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNPVWLRSKIGTVSQ 425 (595)
T ss_dssp ----C-TTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCS---EEEEEETTEETTTBCHHHHHHSEEEECS
T ss_pred ----C-CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCEEhhhCCHHHHHhceEEEcc
Confidence 1 1245999999999999999999999999999999999999998 9999999999876543 367999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHc-------
Q 001293 234 HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL------- 306 (1106)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l------- 306 (1106)
++.+++ .||+||+.|+..... +...+ .++++++.+
T Consensus 426 ~~~l~~-~tv~eni~~~~~~~~-~~~~~------------------------------------~~~~~~~~~~l~~~~~ 467 (595)
T 2yl4_A 426 EPILFS-CSIAENIAYGADDPS-SVTAE------------------------------------EIQRVAEVANAVAFIR 467 (595)
T ss_dssp SCCCCS-SBHHHHHHTTSSSTT-TSCHH------------------------------------HHHHHHHHTTCHHHHH
T ss_pred CCcccC-CCHHHHHhhcCCCcc-ccCHH------------------------------------HHHHHHHHcCCHHHHH
Confidence 987776 699999998642100 00111 112223333
Q ss_pred CCccccccccccccccCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChh
Q 001293 307 GLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 386 (1106)
Q Consensus 307 gL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~ 386 (1106)
.+++..||.+|+.+ ..|||||||||+|||||+.+|++|+||||||+||+.++..+.+.|+++.+ ++|+| .++|+..
T Consensus 468 ~l~~g~~~~~~~~~-~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi-~itH~~~ 543 (595)
T 2yl4_A 468 NFPQGFNTVVGEKG-VLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVL-VIAHRLS 543 (595)
T ss_dssp TSSSGGGCBCSSSS-CCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--TSEEE-EECCCHH
T ss_pred hCcccccccccCCC-CcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc--CCEEE-EEecCHH
Confidence 35677899998764 57999999999999999999999999999999999999999999998743 45544 4667665
Q ss_pred HHHhhcCeEEEEcCCeEEEEcChHHHHH
Q 001293 387 ETYDLFDDIILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 387 ~~~~~~D~iilL~~G~iv~~G~~~~~~~ 414 (1106)
.+ +.||+|++|++|++++.|+++++.+
T Consensus 544 ~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 544 TI-KNANMVAVLDQGKITEYGKHEELLS 570 (595)
T ss_dssp HH-HHSSEEEEEETTEEEEEECSCC---
T ss_pred HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 55 5699999999999999999998753
No 79
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.9e-37 Score=341.08 Aligned_cols=211 Identities=24% Similarity=0.369 Sum_probs=171.2
Q ss_pred eeeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccC
Q 001293 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1106)
Q Consensus 855 ~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1106)
.+.++|+++.|+.. ....+|+||||+|++|+++||+||||||||||+++|+|... + .|+|.++|.++
T Consensus 17 ~l~i~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i 83 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQ----------TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNV 83 (260)
T ss_dssp CEEEEEEEECCTTC----------CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEh
Confidence 48899999888521 11358999999999999999999999999999999999865 4 79999999876
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCcccccc-------ccCCCC
Q 001293 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS-------LVGLPG 1004 (1106)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~-------~~g~~g 1004 (1106)
.. ..+++.+||++|++.+++ .||+||+.|+.. ... ++.+.++++.+++.+..+. ..+..
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~- 152 (260)
T 2ghi_A 84 NKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNK- 152 (260)
T ss_dssp GGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSS-
T ss_pred hhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCC----HHHHHHHHHHhCCHHHHHhccccccccccCC-
Confidence 43 234567999999998876 599999987521 111 2235677888877654322 12222
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeEEEEecC
Q 001293 1005 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1106)
Q Consensus 1005 ~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~G 1084 (1106)
+..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.+ |+|||++||+++. + +.||++++|++
T Consensus 153 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~- 228 (260)
T 2ghi_A 153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNK- 228 (260)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEET-
T ss_pred cCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEEC-
Confidence 467999999999999999999999999999999999999999999999864 8999999999873 4 56999999986
Q ss_pred CEEEEecCC
Q 001293 1085 GQEIYVGPL 1093 (1106)
Q Consensus 1085 g~~~~~g~~ 1093 (1106)
|+++..|+.
T Consensus 229 G~i~~~g~~ 237 (260)
T 2ghi_A 229 GKIVEKGTH 237 (260)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
Confidence 688888874
No 80
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.2e-38 Score=419.04 Aligned_cols=261 Identities=20% Similarity=0.292 Sum_probs=200.1
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHHHhhh
Q 001293 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1106)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1106)
.+......+|+.++++..++ ..+............+|+|+||++.|+.
T Consensus 1041 ~~~~~~a~~ri~~~l~~~~~-----~~~~~~~~~~~~~~g~I~f~nVsf~Y~~--------------------------- 1088 (1321)
T 4f4c_A 1041 YAKATFAGGIIFGMLRKISK-----IDSLSLAGEKKKLYGKVIFKNVRFAYPE--------------------------- 1088 (1321)
T ss_dssp HHHHHHHHHHHHHHHHCCCS-----SCTTCCCSBCCCCCCCEEEEEEEECCTT---------------------------
T ss_pred HHHHHHHHHHHHHHhhCccc-----CCCccCCCCCCCCCCeEEEEEEEEeCCC---------------------------
Confidence 45667778888887765544 1111111111223457999999998731
Q ss_pred cCCccccceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcc---cceEEEEcCC
Q 001293 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1106)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~ 234 (1106)
+...++|+|||++|+|||.+||+||||||||||+++|.|+++|+ +|+|++||.++++... ++.++||||+
T Consensus 1089 ----~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~~lR~~i~~V~Qd 1161 (1321)
T 4f4c_A 1089 ----RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPEHTRSQIAIVSQE 1161 (1321)
T ss_dssp ----SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHHHHHTTEEEECSS
T ss_pred ----CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHHHHHhheEEECCC
Confidence 12345999999999999999999999999999999999999998 9999999999988764 5789999998
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccc
Q 001293 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1106)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1106)
+.+| +.||||||.|+..- .....+.+.++++.. ++ ... +-.|++.+||
T Consensus 1162 p~LF-~gTIreNI~~gld~--~~~sd~ei~~Al~~a---~l------------------------~~~--I~~Lp~GldT 1209 (1321)
T 4f4c_A 1162 PTLF-DCSIAENIIYGLDP--SSVTMAQVEEAARLA---NI------------------------HNF--IAELPEGFET 1209 (1321)
T ss_dssp CCCC-SEEHHHHHSSSSCT--TTSCHHHHHHHHHHT---TC------------------------HHH--HHTSTTTTCS
T ss_pred CEee-CccHHHHHhccCCC--CCCCHHHHHHHHHHh---CC------------------------hHH--HHcCcCCCCC
Confidence 7665 56999999886421 111222233332221 11 001 2368889999
Q ss_pred ccccccccCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001293 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1106)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1106)
.||+++. .||||||||++|||||+++|+||+||||||+||+.|...|.+.|++.. .++|+| ++.| +..+...||+
T Consensus 1210 ~vge~G~-~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI-~IAH-RLsTi~~aD~ 1284 (1321)
T 4f4c_A 1210 RVGDRGT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR--EGRTCI-VIAH-RLNTVMNADC 1284 (1321)
T ss_dssp EETTTSC-SSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEE-EECS-SSSTTTTCSE
T ss_pred EecCCCc-ccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEE-Eecc-CHHHHHhCCE
Confidence 9998766 599999999999999999999999999999999999999999998743 344544 4555 4567788999
Q ss_pred EEEEcCCeEEEEcChHHHHH
Q 001293 395 IILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1106)
|+||++|+|+++|+|+++++
T Consensus 1285 I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1285 IAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp EEEESSSSEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999976
No 81
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.5e-38 Score=387.26 Aligned_cols=256 Identities=23% Similarity=0.357 Sum_probs=194.6
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHHHhhh
Q 001293 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1106)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1106)
.++....++|+.++++.+++. +..+....+.+..+++++||++.++
T Consensus 320 ~~~~~~s~~ri~~~l~~~~~~------~~~~~~~~~~~~~~i~~~~v~~~y~---------------------------- 365 (598)
T 3qf4_B 320 IQMALASAERIFEILDLEEEK------DDPDAVELREVRGEIEFKNVWFSYD---------------------------- 365 (598)
T ss_dssp HHHHHHHHHHHHHHTTSCCCC------CCSSCCCCCSCCCCEEEEEEECCSS----------------------------
T ss_pred HHHHHHHHHHHHHHHcCCCCC------CCCCCCCCCCCCCeEEEEEEEEECC----------------------------
Confidence 467788889999888766541 0001111222345799999998752
Q ss_pred cCCccccceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcc---cceEEEEcCC
Q 001293 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1106)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~ 234 (1106)
...++|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|+
T Consensus 366 -----~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~ 437 (598)
T 3qf4_B 366 -----KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQD 437 (598)
T ss_dssp -----SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTT
T ss_pred -----CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCC
Confidence 1134999999999999999999999999999999999999998 9999999999876543 4679999998
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccc
Q 001293 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1106)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1106)
+.++ +.||+||+.++... ...+...+++ +..+ .+.. .-.+++..||
T Consensus 438 ~~lf-~~tv~eni~~~~~~----~~~~~~~~~~---~~~~------------------------~~~~--~~~~~~g~~t 483 (598)
T 3qf4_B 438 TILF-STTVKENLKYGNPG----ATDEEIKEAA---KLTH------------------------SDHF--IKHLPEGYET 483 (598)
T ss_dssp CCCC-SSBHHHHHHSSSTT----CCTTHHHHHT---TTTT------------------------CHHH--HHTSTTGGGC
T ss_pred Cccc-cccHHHHHhcCCCC----CCHHHHHHHH---HHhC------------------------CHHH--HHhccccccc
Confidence 8766 56999999986311 1111111111 0000 0111 1246778899
Q ss_pred ccccccccCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001293 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1106)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1106)
.+|+.+. .|||||||||+|||||+.+|++|+||||||+||+.++..+.+.|+++. .++|+|+ ++|+...+ ..||+
T Consensus 484 ~~~~~g~-~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~-itH~l~~~-~~~d~ 558 (598)
T 3qf4_B 484 VLTDNGE-DLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--EGKTSII-IAHRLNTI-KNADL 558 (598)
T ss_dssp BCHHHHT-TSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEE-ESCCTTHH-HHCSE
T ss_pred hhcCCCC-CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEE-EecCHHHH-HcCCE
Confidence 9987654 699999999999999999999999999999999999999999999863 3455554 66666655 55999
Q ss_pred EEEEcCCeEEEEcChHHHHH
Q 001293 395 IILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1106)
|++|++|+++++|+++++.+
T Consensus 559 i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 559 IIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp EEEECSSSEEECSCHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999864
No 82
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.9e-38 Score=360.24 Aligned_cols=199 Identities=24% Similarity=0.243 Sum_probs=162.0
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcc---cceEEEEcCCCCCCCCC
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
.++|+|||++|++||+++|+|||||||||||++|+|+++ + +|+|.++|.++....+ ++.++||+|++.+++ +
T Consensus 34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~ 108 (390)
T 3gd7_A 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-G 108 (390)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-E
T ss_pred eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-c
Confidence 359999999999999999999999999999999999987 6 8999999999876654 378999999988876 7
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccc------
Q 001293 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM------ 315 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~------ 315 (1106)
||+||+.+... .. +..++.+++.+||.+..+..
T Consensus 109 tv~enl~~~~~-----~~------------------------------------~~~v~~~l~~~~L~~~~~~~p~~l~~ 147 (390)
T 3gd7_A 109 TFRKNLDPNAA-----HS------------------------------------DQEIWKVADEVGLRSVIEQFPGKLDF 147 (390)
T ss_dssp EHHHHHCTTCC-----SC------------------------------------HHHHHHHHHHTTCHHHHTTSTTGGGC
T ss_pred CHHHHhhhccc-----cC------------------------------------HHHHHHHHHHhCCHHHHhhccccccc
Confidence 99999964210 00 01234556777776655443
Q ss_pred -cccccccCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001293 316 -VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1106)
Q Consensus 316 -vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1106)
+++. ...|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++. .+ ++++.++|+. +....||+
T Consensus 148 ~i~~~-g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~-~tvi~vtHd~-e~~~~aDr 222 (390)
T 3gd7_A 148 VLVDG-GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--AD-CTVILCEARI-EAMLECDQ 222 (390)
T ss_dssp EECTT-TTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TT-SCEEEECSSS-GGGTTCSE
T ss_pred ccccc-cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CC-CEEEEEEcCH-HHHHhCCE
Confidence 3322 23499999999999999999999999999999999999999999998742 33 4455567775 56677999
Q ss_pred EEEEcCCeEEEEcChHHHHH
Q 001293 395 IILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1106)
|++|++|+|+..|+++++..
T Consensus 223 i~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 223 FLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EEEEETTEEEEESSHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998854
No 83
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=3.8e-37 Score=377.42 Aligned_cols=257 Identities=23% Similarity=0.371 Sum_probs=193.2
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHHHhhh
Q 001293 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1106)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1106)
.++....++|+.++++.+++. .+ .....+.....++++||++.+..
T Consensus 308 ~~~~~~a~~ri~~~l~~~~~~-----~~--~~~~~~~~~~~i~~~~v~~~y~~--------------------------- 353 (582)
T 3b5x_A 308 FQRGMAACQTLFGLMDLETER-----DN--GKYEAERVNGEVDVKDVTFTYQG--------------------------- 353 (582)
T ss_pred HHHHHHHHHHHHHHHcCCCcC-----CC--CCCCCCCCCCeEEEEEEEEEcCC---------------------------
Confidence 567788889998888766541 10 01111112356999999998731
Q ss_pred cCCccccceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcc---cceEEEEcCC
Q 001293 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1106)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~ 234 (1106)
.++++|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|+
T Consensus 354 -----~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~ 425 (582)
T 3b5x_A 354 -----KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQN 425 (582)
T ss_pred -----CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCC
Confidence 0134899999999999999999999999999999999999998 9999999998865432 4679999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccc
Q 001293 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1106)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1106)
+.+++ .||+||+.++.. .....+...++.+ ..++ +..++ .+++..||
T Consensus 426 ~~l~~-~tv~eni~~~~~---~~~~~~~~~~~~~---~~~l------------------------~~~~~--~~p~g~~t 472 (582)
T 3b5x_A 426 VHLFN-DTIANNIAYAAE---GEYTREQIEQAAR---QAHA------------------------MEFIE--NMPQGLDT 472 (582)
T ss_pred Ccccc-ccHHHHHhccCC---CCCCHHHHHHHHH---HCCC------------------------HHHHH--hCcccccc
Confidence 87776 599999998631 0111111111111 0000 11111 34567789
Q ss_pred ccccccccCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001293 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1106)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1106)
.+|+++ ..||||||||++|||||+.+|++|+||||||+||+.++..+.+.|+++. .++|+|+ ++|+...+ +.||+
T Consensus 473 ~~~~~~-~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~-itH~~~~~-~~~d~ 547 (582)
T 3b5x_A 473 VIGENG-TSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ--KNKTVLV-IAHRLSTI-EQADE 547 (582)
T ss_pred hhcCCC-CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEE-EecCHHHH-HhCCE
Confidence 998764 5799999999999999999999999999999999999999999999864 3455555 56665554 57999
Q ss_pred EEEEcCCeEEEEcChHHHHH
Q 001293 395 IILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1106)
|++|++|+++++|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 548 ILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998854
No 84
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.3e-37 Score=338.74 Aligned_cols=206 Identities=17% Similarity=0.206 Sum_probs=171.1
Q ss_pred eeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCC
Q 001293 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1106)
Q Consensus 856 l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1106)
+.++|+++.|+.. ...+.+|+|+||+|+ |++++|+||||||||||+++|+|.. + .+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~~~---------~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~~g~~~~ 68 (263)
T 2pjz_A 2 IQLKNVGITLSGK---------GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P--YSGNIFINGMEVR 68 (263)
T ss_dssp EEEEEEEEEEEEE---------TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEETTEEGG
T ss_pred EEEEEEEEEeCCC---------CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEECCEECc
Confidence 5678888777410 011469999999999 9999999999999999999999976 4 5899999998754
Q ss_pred cccccceEE-EEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCc-cccccccCCCCCCCCCHHHH
Q 001293 936 QETFARISG-YCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQR 1013 (1106)
Q Consensus 936 ~~~~~~~~g-yv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~g~~g~~~LSgGqr 1013 (1106)
....++.+| |++|++.+ .+||+||+.+..... ... ++.++++++.+++. +..+.. +.+||||||
T Consensus 69 ~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~-----~~~LSgGqk 134 (263)
T 2pjz_A 69 KIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GLD----RDLFLEMLKALKLGEEILRRK-----LYKLSAGQS 134 (263)
T ss_dssp GCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CCC----HHHHHHHHHHTTCCGGGGGSB-----GGGSCHHHH
T ss_pred chHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---chH----HHHHHHHHHHcCCChhHhcCC-----hhhCCHHHH
Confidence 211255799 99999877 789999999875432 111 24578899999998 777765 357999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcC-eEEEEecCCEEEEecC
Q 001293 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD-ELFLMKRGGQEIYVGP 1092 (1106)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D-~v~~l~~Gg~~~~~g~ 1092 (1106)
||++|||||+.+|++|||||||+|||+.++..+++.|+++.+ |||++|||++ ++.+.|| ++++|++ |++++.|+
T Consensus 135 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~-G~i~~~g~ 209 (263)
T 2pjz_A 135 VLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVG-NRLQGPIS 209 (263)
T ss_dssp HHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEEC-CEEEEecC
Confidence 999999999999999999999999999999999999998743 9999999987 4677899 9999986 68888887
Q ss_pred C
Q 001293 1093 L 1093 (1106)
Q Consensus 1093 ~ 1093 (1106)
.
T Consensus 210 ~ 210 (263)
T 2pjz_A 210 V 210 (263)
T ss_dssp H
T ss_pred H
Confidence 4
No 85
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=3.5e-37 Score=377.73 Aligned_cols=257 Identities=22% Similarity=0.376 Sum_probs=191.2
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHHHhhh
Q 001293 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1106)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1106)
.++....++|+.++++.+++. .+ .....+.....++++||++.+..
T Consensus 308 ~~~~~~a~~ri~~~l~~~~~~-----~~--~~~~~~~~~~~i~~~~v~~~y~~--------------------------- 353 (582)
T 3b60_A 308 FQRGMAACQTLFAILDSEQEK-----DE--GKRVIDRATGDLEFRNVTFTYPG--------------------------- 353 (582)
T ss_dssp HHHHHHHHHHHHHHHHSCCSC-----CC--CCBCCSCCCCCEEEEEEEECSSS---------------------------
T ss_pred HHHHHHHHHHHHHHHcCCCCc-----cC--CCCCCCCCCCcEEEEEEEEEcCC---------------------------
Confidence 456677788887777654430 00 00111112346999999987621
Q ss_pred cCCccccceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcc---cceEEEEcCC
Q 001293 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1106)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~ 234 (1106)
+ ++++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|+
T Consensus 354 ---~--~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~ 425 (582)
T 3b60_A 354 ---R--EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQN 425 (582)
T ss_dssp ---S--SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSS
T ss_pred ---C--CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccC
Confidence 1 135999999999999999999999999999999999999998 9999999999876543 3579999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccc
Q 001293 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1106)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1106)
+.+++ .||+||+.|+.. . ....+...++.+ ..++ +..++ .+++..||
T Consensus 426 ~~l~~-~tv~eni~~~~~-~--~~~~~~~~~~l~---~~~l------------------------~~~~~--~~p~g~~~ 472 (582)
T 3b60_A 426 VHLFN-DTVANNIAYART-E--EYSREQIEEAAR---MAYA------------------------MDFIN--KMDNGLDT 472 (582)
T ss_dssp CCCCS-SBHHHHHHTTTT-S--CCCHHHHHHHHH---TTTC------------------------HHHHH--HSTTGGGS
T ss_pred CcCCC-CCHHHHHhccCC-C--CCCHHHHHHHHH---HcCC------------------------HHHHH--hccccccc
Confidence 87776 599999998631 0 111111111111 0100 11122 24567789
Q ss_pred ccccccccCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001293 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1106)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1106)
.+|+.+ ..|||||||||+|||||+.+|++++||||||+||+.++..+.+.|+++. .++|+|+ ++|+...+ +.||+
T Consensus 473 ~~~~~~-~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~-itH~~~~~-~~~d~ 547 (582)
T 3b60_A 473 IIGENG-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLV-IAHRLSTI-EQADE 547 (582)
T ss_dssp BCCTTS-CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH--TTSEEEE-ECSCGGGT-TTCSE
T ss_pred cccCCC-CCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEE-EeccHHHH-HhCCE
Confidence 998764 5799999999999999999999999999999999999999999999874 3455554 66665554 57999
Q ss_pred EEEEcCCeEEEEcChHHHHH
Q 001293 395 IILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1106)
|++|++|++++.|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 548 IVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEecCHHHHHH
Confidence 99999999999999998864
No 86
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.5e-37 Score=329.28 Aligned_cols=188 Identities=19% Similarity=0.265 Sum_probs=155.4
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHHH
Q 001293 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1106)
++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++. ..++.++||+|++.+++.+||+|
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e 97 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVED 97 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHH
Confidence 5999999999999999999999999999999999999998 999999998875 34578999999998999999999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCCC
Q 001293 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1106)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1106)
|+.|+....+. .. + ...++.+++.+||++. +.. +..||
T Consensus 98 nl~~~~~~~~~-~~----------------------------------~-~~~~~~~l~~~gl~~~-~~~-----~~~LS 135 (214)
T 1sgw_A 98 YLKAVASLYGV-KV----------------------------------N-KNEIMDALESVEVLDL-KKK-----LGELS 135 (214)
T ss_dssp HHHHHHHHTTC-CC----------------------------------C-HHHHHHHHHHTTCCCT-TSB-----GGGSC
T ss_pred HHHHHHHhcCC-ch----------------------------------H-HHHHHHHHHHcCCCcC-CCC-----hhhCC
Confidence 99987543221 00 0 1235667889999865 543 45799
Q ss_pred hhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001293 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1106)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~i 403 (1106)
|||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+ .+.| |+.++|+..++..++|+|+++ +|+|
T Consensus 136 gGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t-iiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILK-EKGI-VIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHH-HHSE-EEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHh-CCCE-EEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 9999999999999999999999999999999999999999998764 3445 445677778888888887744 4554
No 87
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.8e-36 Score=327.35 Aligned_cols=196 Identities=21% Similarity=0.311 Sum_probs=151.0
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHH
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++|++|++.+++. ||+
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g----------~i~~v~q~~~~~~~-tv~ 86 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQFSWIMPG-TIK 86 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS----------CEEEECSSCCCCSB-CHH
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC----------EEEEEecCCcccCC-CHH
Confidence 35999999999999999999999999999999999999998 99999998 39999999887774 999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCC
Q 001293 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1106)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1106)
||+.|+.... . ....+. .+..+ .+..++. ++...++.++. ....|
T Consensus 87 enl~~~~~~~----~-~~~~~~---~~~~~------------------------l~~~~~~--~~~~~~~~~~~-~~~~L 131 (229)
T 2pze_A 87 ENIIFGVSYD----E-YRYRSV---IKACQ------------------------LEEDISK--FAEKDNIVLGE-GGITL 131 (229)
T ss_dssp HHHHTTSCCC----H-HHHHHH---HHHTT------------------------CHHHHTT--STTGGGSCBCT-TCTTS
T ss_pred HHhhccCCcC----h-HHHHHH---HHHhC------------------------cHHHHHh--CcccccccccC-CCCcC
Confidence 9999853210 0 000000 00000 0111222 23334555553 35679
Q ss_pred ChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHH-HHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001293 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL-RQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1106)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l-~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~i 403 (1106)
||||||||+|||||+.+|+++||||||+|||+.++..+++.+ +++. .+ ++|+.++|+..++ ..||+|++|++|++
T Consensus 132 SgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~-~tvi~vtH~~~~~-~~~d~v~~l~~G~i 207 (229)
T 2pze_A 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--AN-KTRILVTSKMEHL-KKADKILILHEGSS 207 (229)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TT-SEEEEECCCHHHH-HHCSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CC-CEEEEEcCChHHH-HhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999864 4432 23 4455567777665 46999999999999
Q ss_pred EEEcChHHHH
Q 001293 404 VYQGPRELVL 413 (1106)
Q Consensus 404 v~~G~~~~~~ 413 (1106)
++.|+++++.
T Consensus 208 ~~~g~~~~~~ 217 (229)
T 2pze_A 208 YFYGTFSELQ 217 (229)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9999998874
No 88
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.2e-36 Score=328.60 Aligned_cols=200 Identities=22% Similarity=0.333 Sum_probs=160.2
Q ss_pred eeeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccC
Q 001293 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1106)
Q Consensus 855 ~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1106)
.+.++|+++.|+. ++.++|+||||+|++|+++||+||||||||||+++|+|... +.+|+|.++|
T Consensus 6 ~l~~~~l~~~y~~-----------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g--- 69 (229)
T 2pze_A 6 EVVMENVTAFWEE-----------GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 69 (229)
T ss_dssp EEEEEEEEECSST-----------TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS---
T ss_pred eEEEEEEEEEeCC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC---
Confidence 4789999988741 12458999999999999999999999999999999999876 5689999998
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCcccccc-------ccCCCCCCC
Q 001293 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS-------LVGLPGVSG 1007 (1106)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~-------~~g~~g~~~ 1007 (1106)
.++|++|++.+++. ||+||+.|+.. .... .+.++++.+++.+..+. ..+.+ +.+
T Consensus 70 -------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~ 130 (229)
T 2pze_A 70 -------RISFCSQFSWIMPG-TIKENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEG-GIT 130 (229)
T ss_dssp -------CEEEECSSCCCCSB-CHHHHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCTT-CTT
T ss_pred -------EEEEEecCCcccCC-CHHHHhhccCC------cChH----HHHHHHHHhCcHHHHHhCcccccccccCC-CCc
Confidence 38999999988775 99999987521 1111 13345555565443322 12222 468
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCeEEEEecCccHHHHHhcCeEEEEecCCE
Q 001293 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1106)
Q Consensus 1008 LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~-l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1086 (1106)
||||||||++|||||+.+|++|||||||+|||+.++..+++. ++++. +|+|||++||+++ .+ +.||++++|++ |+
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~-G~ 206 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHE-GS 206 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH-HH-HhCCEEEEEEC-CE
Confidence 999999999999999999999999999999999999999997 45554 4899999999986 34 56999999986 58
Q ss_pred EEEecCC
Q 001293 1087 EIYVGPL 1093 (1106)
Q Consensus 1087 ~~~~g~~ 1093 (1106)
+++.|+.
T Consensus 207 i~~~g~~ 213 (229)
T 2pze_A 207 SYFYGTF 213 (229)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 8888874
No 89
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=7.2e-37 Score=331.97 Aligned_cols=196 Identities=24% Similarity=0.337 Sum_probs=151.8
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHH
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++||+|++. ++.+||+
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~-~~~~tv~ 83 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG----------SVAYVPQQAW-IQNDSLR 83 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS----------CEEEECSSCC-CCSEEHH
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC----------EEEEEcCCCc-CCCcCHH
Confidence 35999999999999999999999999999999999999998 99999998 3999999875 5689999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCC-ccccccccccccccC
Q 001293 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL-DVCADTMVGDEMIRG 323 (1106)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL-~~~~dt~vg~~~~~~ 323 (1106)
||+.|+.... . +...++ .+.. .+++.+++ +...+|.++ +.+..
T Consensus 84 enl~~~~~~~---~--~~~~~~---~~~~---------------------------~l~~~~~~~~~~~~~~~~-~~~~~ 127 (237)
T 2cbz_A 84 ENILFGCQLE---E--PYYRSV---IQAC---------------------------ALLPDLEILPSGDRTEIG-EKGVN 127 (237)
T ss_dssp HHHHTTSCCC---T--THHHHH---HHHT---------------------------TCHHHHTTSTTGGGSEES-TTSBC
T ss_pred HHhhCccccC---H--HHHHHH---HHHH---------------------------hhHHHHHhcccccccccc-CCCCC
Confidence 9999864211 0 000000 0000 01222332 223344454 34668
Q ss_pred CChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHH---HHHHhcCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001293 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLR---QNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1106)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~---~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~ 400 (1106)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+ ++. .+ ++||.++|+...+ ..||+|++|++
T Consensus 128 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~~-~tviivtH~~~~~-~~~d~v~~l~~ 203 (237)
T 2cbz_A 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--KN-KTRILVTHSMSYL-PQVDVIIVMSG 203 (237)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--TT-SEEEEECSCSTTG-GGSSEEEEEET
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--CC-CEEEEEecChHHH-HhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999884 321 23 4455567776665 57999999999
Q ss_pred CeEEEEcChHHHHH
Q 001293 401 GQIVYQGPRELVLE 414 (1106)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (1106)
|++++.|+++++.+
T Consensus 204 G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 204 GKISEMGSYQELLA 217 (237)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEeCCHHHHhh
Confidence 99999999988754
No 90
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.9e-37 Score=354.85 Aligned_cols=212 Identities=20% Similarity=0.270 Sum_probs=176.9
Q ss_pred CceeeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCc
Q 001293 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (1106)
Q Consensus 853 p~~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 932 (1106)
+..++++||+++|+. ++..+|+||||+|++||+++|+|||||||||||++|+|... .+|+|.++|.
T Consensus 17 ~~~i~~~~l~~~y~~-----------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~ 82 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTE-----------GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGV 82 (390)
T ss_dssp SCCEEEEEEEEESSS-----------SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSC
T ss_pred CCeEEEEEEEEEecC-----------CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCE
Confidence 346999999988842 23468999999999999999999999999999999999763 5899999999
Q ss_pred cCCcc---cccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCC------C
Q 001293 933 PKKQE---TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL------P 1003 (1106)
Q Consensus 933 ~~~~~---~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~------~ 1003 (1106)
++... .+++.+|||+|++.+++ +||+||+.+.. ... ++.++++++.++|.++.++.+.. +
T Consensus 83 ~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~ 151 (390)
T 3gd7_A 83 SWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVD 151 (390)
T ss_dssp BTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECT
T ss_pred ECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhccccccccccc
Confidence 87542 34678999999999887 69999996421 111 24578899999998877766431 1
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeEEEEec
Q 001293 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1106)
Q Consensus 1004 g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1083 (1106)
+...|||||||||+|||||+.+|+||||||||||||+.++..+++.|+++. .++|||++|||++ ....||++++|++
T Consensus 152 ~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~ 228 (390)
T 3gd7_A 152 GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEE 228 (390)
T ss_dssp TTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEET
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEEC
Confidence 223599999999999999999999999999999999999999999999864 5899999999975 4567999999986
Q ss_pred CCEEEEecCC
Q 001293 1084 GGQEIYVGPL 1093 (1106)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1106)
|+++..|+.
T Consensus 229 -G~i~~~g~~ 237 (390)
T 3gd7_A 229 -NKVRQYDSI 237 (390)
T ss_dssp -TEEEEESSH
T ss_pred -CEEEEECCH
Confidence 699998874
No 91
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.1e-34 Score=355.75 Aligned_cols=214 Identities=23% Similarity=0.314 Sum_probs=178.7
Q ss_pred CceeeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCc
Q 001293 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (1106)
Q Consensus 853 p~~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 932 (1106)
...++++||+++|+. ++.++|+|+|+++++||++||+||||||||||+++|+|... +.+|+|.++|.
T Consensus 339 ~~~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~ 405 (582)
T 3b5x_A 339 NGEVDVKDVTFTYQG-----------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD--VDSGSICLDGH 405 (582)
T ss_pred CCeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCE
Confidence 356999999999852 11358999999999999999999999999999999999876 56899999998
Q ss_pred cCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccc-------cCC
Q 001293 933 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL-------VGL 1002 (1106)
Q Consensus 933 ~~~~---~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~-------~g~ 1002 (1106)
++.. ..+++.+|||+|++.+++ .||+||+.++.. ++.+ ++.++++++.+++.++.+.. ++.
T Consensus 406 ~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~----~~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~ 476 (582)
T 3b5x_A 406 DVRDYKLTNLRRHFALVSQNVHLFN-DTIANNIAYAAE----GEYT----REQIEQAARQAHAMEFIENMPQGLDTVIGE 476 (582)
T ss_pred EhhhCCHHHHhcCeEEEcCCCcccc-ccHHHHHhccCC----CCCC----HHHHHHHHHHCCCHHHHHhCcccccchhcC
Confidence 8643 346678999999998876 599999998531 1122 24478899999987765543 233
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeEEEEe
Q 001293 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1106)
Q Consensus 1003 ~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1082 (1106)
. +.+||||||||++|||||+++|+||+||||||+||+.+++.|++.++++. +|+|+|+++|+++ ..+.||++++|+
T Consensus 477 ~-~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~--~~~~~d~i~~l~ 552 (582)
T 3b5x_A 477 N-GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-KNKTVLVIAHRLS--TIEQADEILVVD 552 (582)
T ss_pred C-CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEE
Confidence 2 46899999999999999999999999999999999999999999999986 4899999999986 345799999998
Q ss_pred cCCEEEEecCC
Q 001293 1083 RGGQEIYVGPL 1093 (1106)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1106)
+ |++++.|+.
T Consensus 553 ~-G~i~~~g~~ 562 (582)
T 3b5x_A 553 E-GEIIERGRH 562 (582)
T ss_pred C-CEEEEECCH
Confidence 6 689998874
No 92
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.1e-35 Score=361.13 Aligned_cols=213 Identities=25% Similarity=0.400 Sum_probs=175.0
Q ss_pred CceeeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCc
Q 001293 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (1106)
Q Consensus 853 p~~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 932 (1106)
++.++++||+|+|+. +.++|+|||+++++||++||+||||||||||+++|+|... +.+|+|.++|.
T Consensus 352 ~~~i~~~~v~~~y~~------------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~ 417 (598)
T 3qf4_B 352 RGEIEFKNVWFSYDK------------KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD--VDRGQILVDGI 417 (598)
T ss_dssp CCCEEEEEEECCSSS------------SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC--CSEEEEEETTE
T ss_pred CCeEEEEEEEEECCC------------CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCeEEEECCE
Confidence 457999999999852 2358999999999999999999999999999999999876 56899999998
Q ss_pred cCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCcccccccc-CC-----C
Q 001293 933 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV-GL-----P 1003 (1106)
Q Consensus 933 ~~~~---~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-g~-----~ 1003 (1106)
++.. ..+++.+|||+|++.+++ .||+||+.++. +..+. +.++++++.+++.+..+..+ |. +
T Consensus 418 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~ 487 (598)
T 3qf4_B 418 DIRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGN-----PGATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTD 487 (598)
T ss_dssp EGGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSS-----TTCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHH
T ss_pred EhhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCC-----CCCCH----HHHHHHHHHhCCHHHHHhccccccchhcC
Confidence 8654 346678999999998875 59999998752 11222 23566777777665444332 11 0
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeEEEEec
Q 001293 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1106)
Q Consensus 1004 g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1083 (1106)
.+.+||||||||++|||||+++|+||+||||||+||+.+++.|++.++++. +|+|+|++||+++. + +.||++++|++
T Consensus 488 ~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~ 564 (598)
T 3qf4_B 488 NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLRD 564 (598)
T ss_dssp HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEECS
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEEC
Confidence 125799999999999999999999999999999999999999999999985 58999999999973 4 56999999986
Q ss_pred CCEEEEecCC
Q 001293 1084 GGQEIYVGPL 1093 (1106)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1106)
|++++.|+.
T Consensus 565 -G~i~~~g~~ 573 (598)
T 3qf4_B 565 -GEIVEMGKH 573 (598)
T ss_dssp -SSEEECSCH
T ss_pred -CEEEEECCH
Confidence 689999874
No 93
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=2.4e-36 Score=327.88 Aligned_cols=199 Identities=23% Similarity=0.378 Sum_probs=157.6
Q ss_pred eeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCC
Q 001293 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1106)
Q Consensus 856 l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1106)
++++|+++.|+. ++..+|+||||+|++|+++||+||||||||||+++|+|... +..|+|.++|
T Consensus 4 l~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---- 66 (237)
T 2cbz_A 4 ITVRNATFTWAR-----------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---- 66 (237)
T ss_dssp EEEEEEEEESCT-----------TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----
T ss_pred EEEEEEEEEeCC-----------CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----
Confidence 788999888741 12458999999999999999999999999999999999876 6789999998
Q ss_pred cccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccc-------cccCCCCCCCC
Q 001293 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ-------SLVGLPGVSGL 1008 (1106)
Q Consensus 936 ~~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~-------~~~g~~g~~~L 1008 (1106)
.+||++|++.+ +.+||+||+.|+... ..+. .+++++.+++.+..+ ...+.+ +.+|
T Consensus 67 ------~i~~v~Q~~~~-~~~tv~enl~~~~~~------~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~L 128 (237)
T 2cbz_A 67 ------SVAYVPQQAWI-QNDSLRENILFGCQL------EEPY----YRSVIQACALLPDLEILPSGDRTEIGEK-GVNL 128 (237)
T ss_dssp ------CEEEECSSCCC-CSEEHHHHHHTTSCC------CTTH----HHHHHHHTTCHHHHTTSTTGGGSEESTT-SBCC
T ss_pred ------EEEEEcCCCcC-CCcCHHHHhhCcccc------CHHH----HHHHHHHHhhHHHHHhccccccccccCC-CCCC
Confidence 28999999864 578999999875311 1111 233444444322111 111222 4679
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCCeEEEEecCccHHHHHhcCeEEEEecCC
Q 001293 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR---NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1106)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~---~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg 1085 (1106)
|||||||++|||||+.+|+||||||||+|||+.++..+++.+. ++. +|+|||++||+++. + +.||++++|++ |
T Consensus 129 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~-G 204 (237)
T 2cbz_A 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSG-G 204 (237)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEET-T
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeC-C
Confidence 9999999999999999999999999999999999999999995 333 58999999999873 4 57999999986 5
Q ss_pred EEEEecCC
Q 001293 1086 QEIYVGPL 1093 (1106)
Q Consensus 1086 ~~~~~g~~ 1093 (1106)
++++.|+.
T Consensus 205 ~i~~~g~~ 212 (237)
T 2cbz_A 205 KISEMGSY 212 (237)
T ss_dssp EEEEEECH
T ss_pred EEEEeCCH
Confidence 88888874
No 94
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=9.7e-36 Score=365.92 Aligned_cols=218 Identities=27% Similarity=0.361 Sum_probs=179.8
Q ss_pred ce-eeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCc
Q 001293 854 HS-LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (1106)
Q Consensus 854 ~~-l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 932 (1106)
.. ++++||+++|+.. .+.++|+|||+++++||++||+||||||||||+++|+|... +.+|+|.++|.
T Consensus 339 ~~~i~~~~v~~~y~~~----------~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~ 406 (595)
T 2yl4_A 339 QGALEFKNVHFAYPAR----------PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD--PASGTISLDGH 406 (595)
T ss_dssp CCCEEEEEEEEECSSC----------TTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC--CSEEEEEETTE
T ss_pred CCeEEEEEEEEEeCCC----------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCE
Confidence 46 9999999998521 12469999999999999999999999999999999999876 56899999998
Q ss_pred cCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCcccc-------ccccCC
Q 001293 933 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGL 1002 (1106)
Q Consensus 933 ~~~~---~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~-------~~~~g~ 1002 (1106)
++.. ..+++.+|||+|++.+++ .||+||+.|+.... ...+ ++.++++++.+++.++. +..+|.
T Consensus 407 ~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~ 479 (595)
T 2yl4_A 407 DIRQLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGADDP--SSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGE 479 (595)
T ss_dssp ETTTBCHHHHHHSEEEECSSCCCCS-SBHHHHHHTTSSST--TTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSS
T ss_pred EhhhCCHHHHHhceEEEccCCcccC-CCHHHHHhhcCCCc--cccC----HHHHHHHHHHcCCHHHHHhCcccccccccC
Confidence 8753 345678999999998876 59999999863210 0112 34478899999886554 333444
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeEEEEe
Q 001293 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1106)
Q Consensus 1003 ~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1082 (1106)
. +.+||||||||++|||||+++|+||+||||||+||+.+++.+++.++++.+ |+|||++||+++ ..+.||++++|+
T Consensus 480 ~-~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~ 555 (595)
T 2yl4_A 480 K-GVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLS--TIKNANMVAVLD 555 (595)
T ss_dssp S-SCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHH--HHHHSSEEEEEE
T ss_pred C-CCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHcCCEEEEEE
Confidence 3 368999999999999999999999999999999999999999999999865 899999999986 346799999998
Q ss_pred cCCEEEEecCCCC
Q 001293 1083 RGGQEIYVGPLGR 1095 (1106)
Q Consensus 1083 ~Gg~~~~~g~~g~ 1095 (1106)
+ |+++..|+..+
T Consensus 556 ~-G~i~~~g~~~~ 567 (595)
T 2yl4_A 556 Q-GKITEYGKHEE 567 (595)
T ss_dssp T-TEEEEEECSCC
T ss_pred C-CEEEEECCHHH
Confidence 6 68999888643
No 95
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.5e-36 Score=371.65 Aligned_cols=214 Identities=21% Similarity=0.303 Sum_probs=176.7
Q ss_pred CCceeeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcC
Q 001293 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (1106)
Q Consensus 852 ~p~~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g 931 (1106)
.+..++++||+|+|+. +..++|+|||+++++||++||+||||||||||+++|+|... +.+|+|.++|
T Consensus 338 ~~~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~i~g 404 (587)
T 3qf4_A 338 VEGSVSFENVEFRYFE-----------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID--PERGRVEVDE 404 (587)
T ss_dssp CCCCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC--CSEEEEEESS
T ss_pred CCCcEEEEEEEEEcCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEECC
Confidence 3457999999999852 23468999999999999999999999999999999999876 5689999999
Q ss_pred ccCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCcccc-------ccccC
Q 001293 932 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVG 1001 (1106)
Q Consensus 932 ~~~~~---~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~-------~~~~g 1001 (1106)
.++.. ..+++.+|||+|++.+++ .||+||+.++. +.... +.++++++..++.+.. +..++
T Consensus 405 ~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~-----~~~~~----~~~~~~~~~~~~~~~i~~l~~g~~~~~~ 474 (587)
T 3qf4_A 405 LDVRTVKLKDLRGHISAVPQETVLFS-GTIKENLKWGR-----EDATD----DEIVEAAKIAQIHDFIISLPEGYDSRVE 474 (587)
T ss_dssp SBGGGBCHHHHHHHEEEECSSCCCCS-EEHHHHHTTTC-----SSCCH----HHHHHHHHHTTCHHHHHTSSSGGGCEEC
T ss_pred EEcccCCHHHHHhheEEECCCCcCcC-ccHHHHHhccC-----CCCCH----HHHHHHHHHhCcHHHHHhcccchhhHhc
Confidence 98754 345678999999998876 49999998752 11222 2355666776665433 23334
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeEEEE
Q 001293 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1106)
Q Consensus 1002 ~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l 1081 (1106)
.. +.+||||||||++|||||+++|+||+||||||+||+++++.|++.++++. +|+|+|++||+++ ....||++++|
T Consensus 475 ~~-~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~--~~~~~d~i~vl 550 (587)
T 3qf4_A 475 RG-GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP--TALLADKILVL 550 (587)
T ss_dssp SS-SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH--HHTTSSEEEEE
T ss_pred CC-CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH--HHHhCCEEEEE
Confidence 33 46899999999999999999999999999999999999999999999974 5899999999986 34689999999
Q ss_pred ecCCEEEEecCC
Q 001293 1082 KRGGQEIYVGPL 1093 (1106)
Q Consensus 1082 ~~Gg~~~~~g~~ 1093 (1106)
++ |++++.|+.
T Consensus 551 ~~-G~i~~~g~~ 561 (587)
T 3qf4_A 551 HE-GKVAGFGTH 561 (587)
T ss_dssp ET-TEEEEEECH
T ss_pred EC-CEEEEECCH
Confidence 86 699999985
No 96
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2.8e-36 Score=369.23 Aligned_cols=214 Identities=24% Similarity=0.377 Sum_probs=177.4
Q ss_pred CCceeeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcC
Q 001293 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (1106)
Q Consensus 852 ~p~~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g 931 (1106)
.+..++++||+++|+. ++.++|+|||+++++||++||+||||||||||+++|+|... +.+|+|.++|
T Consensus 336 ~~~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g 402 (578)
T 4a82_A 336 KQGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDG 402 (578)
T ss_dssp CSCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETT
T ss_pred CCCeEEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECC
Confidence 3457999999999863 12468999999999999999999999999999999999876 5689999999
Q ss_pred ccCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCcccccc-------ccC
Q 001293 932 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS-------LVG 1001 (1106)
Q Consensus 932 ~~~~~---~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~-------~~g 1001 (1106)
.++.. ..+++.+|||+|++.+++. ||+||+.++. +... ++.++++++.+++.+..+. .+|
T Consensus 403 ~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~lp~g~~t~~~ 472 (578)
T 4a82_A 403 HNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR-----PTAT----DEEVVEAAKMANAHDFIMNLPQGYDTEVG 472 (578)
T ss_dssp EEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC-----SSCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBCC
T ss_pred EEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCC-----CCCC----HHHHHHHHHHhCcHHHHHhCcchhhhhhc
Confidence 98654 3456789999999988865 9999998752 1122 2346777888777654333 233
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeEEEE
Q 001293 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1106)
Q Consensus 1002 ~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l 1081 (1106)
.. +.+||||||||++|||||+++|+||+|||||||||+++++.+++.++++. +++|+|+++|+++. + +.||++++|
T Consensus 473 ~~-g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l 548 (578)
T 4a82_A 473 ER-GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST-I-THADKIVVI 548 (578)
T ss_dssp GG-GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-T-TTCSEEEEE
T ss_pred cC-CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEE
Confidence 32 35799999999999999999999999999999999999999999999885 57999999999974 4 569999999
Q ss_pred ecCCEEEEecCC
Q 001293 1082 KRGGQEIYVGPL 1093 (1106)
Q Consensus 1082 ~~Gg~~~~~g~~ 1093 (1106)
++ |++++.|+.
T Consensus 549 ~~-G~i~~~g~~ 559 (578)
T 4a82_A 549 EN-GHIVETGTH 559 (578)
T ss_dssp ET-TEEEEEECH
T ss_pred EC-CEEEEECCH
Confidence 86 699999985
No 97
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=7.1e-36 Score=366.17 Aligned_cols=214 Identities=22% Similarity=0.301 Sum_probs=178.4
Q ss_pred CceeeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCc
Q 001293 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (1106)
Q Consensus 853 p~~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 932 (1106)
...++++||+++|+. ++.++|+|+|+++++||++||+||||||||||+++|+|... +.+|+|.++|.
T Consensus 339 ~~~i~~~~v~~~y~~-----------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~ 405 (582)
T 3b60_A 339 TGDLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGH 405 (582)
T ss_dssp CCCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTE
T ss_pred CCcEEEEEEEEEcCC-----------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC--CCCCeEEECCE
Confidence 356999999998852 11358999999999999999999999999999999999876 56899999998
Q ss_pred cCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccc-------cCC
Q 001293 933 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL-------VGL 1002 (1106)
Q Consensus 933 ~~~~---~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~-------~g~ 1002 (1106)
++.. ..+++.+||++|++.+++ .||+||+.++.. .+.+ ++.++++++.+++.+..+.. ++.
T Consensus 406 ~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~----~~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~ 476 (582)
T 3b60_A 406 DLREYTLASLRNQVALVSQNVHLFN-DTVANNIAYART----EEYS----REQIEEAARMAYAMDFINKMDNGLDTIIGE 476 (582)
T ss_dssp ETTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTT----SCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCT
T ss_pred EccccCHHHHHhhCeEEccCCcCCC-CCHHHHHhccCC----CCCC----HHHHHHHHHHcCCHHHHHhccccccccccC
Confidence 8753 345678999999998887 499999998531 1122 23477888988887654433 333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeEEEEe
Q 001293 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1106)
Q Consensus 1003 ~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1082 (1106)
. +.+||||||||++|||||+++|+||+||||||+||+.+++.+++.++++.+ |+|+|+++|+++. .+.||++++|+
T Consensus 477 ~-~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~i~~l~ 552 (582)
T 3b60_A 477 N-GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQADEIVVVE 552 (582)
T ss_dssp T-SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG--TTTCSEEEEEE
T ss_pred C-CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH--HHhCCEEEEEE
Confidence 3 468999999999999999999999999999999999999999999999864 9999999999973 45799999998
Q ss_pred cCCEEEEecCC
Q 001293 1083 RGGQEIYVGPL 1093 (1106)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1106)
+ |+++..|+.
T Consensus 553 ~-G~i~~~g~~ 562 (582)
T 3b60_A 553 D-GIIVERGTH 562 (582)
T ss_dssp T-TEEEEEECH
T ss_pred C-CEEEEecCH
Confidence 6 589998874
No 98
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=6.6e-35 Score=385.05 Aligned_cols=260 Identities=19% Similarity=0.354 Sum_probs=194.9
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCC--CCCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHHHh
Q 001293 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGI--DLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYL 155 (1106)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 155 (1106)
.++.....+|+.++++..++ ... ....+. +....+++|+||++.++.
T Consensus 994 ~~~~~~a~~ri~~~l~~~~~-----~~~-~~~~~~~~~~~~g~i~~~~v~~~y~~------------------------- 1042 (1284)
T 3g5u_A 994 YAKATVSASHIIRIIEKTPE-----IDS-YSTQGLKPNMLEGNVQFSGVVFNYPT------------------------- 1042 (1284)
T ss_dssp STHHHHHHHHHHHHHHSCCS-----SSS-CCSSCCCTTTTSCCEEEEEEEBCCSC-------------------------
T ss_pred HHHHHHHHHHHHHHHcCCCc-----ccc-cccccccccCCCCcEEEEEEEEECCC-------------------------
Confidence 45666777777777665443 100 000111 122457999999988731
Q ss_pred hhcCCccccceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcc---cceEEEEc
Q 001293 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYIS 232 (1106)
Q Consensus 156 ~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~ 232 (1106)
+...++|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++..... ++.++||+
T Consensus 1043 ------~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~ 1113 (1284)
T 3g5u_A 1043 ------RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQWLRAQLGIVS 1113 (1284)
T ss_dssp ------GGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHHHHTTSCEEEE
T ss_pred ------CCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHHHHHhceEEEC
Confidence 12235999999999999999999999999999999999999998 9999999999876643 46799999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccc
Q 001293 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (1106)
Q Consensus 233 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (1106)
|++.++ +.||+|||.++..... ...+.+.+..+.. + .+.. .-.+++.+
T Consensus 1114 Q~~~l~-~~ti~eNi~~~~~~~~--~~~~~i~~~~~~~---~------------------------~~~~--i~~l~~gl 1161 (1284)
T 3g5u_A 1114 QEPILF-DCSIAENIAYGDNSRV--VSYEEIVRAAKEA---N------------------------IHQF--IDSLPDKY 1161 (1284)
T ss_dssp SSCCCC-SSBHHHHHTCCCSSCC--CCHHHHHHHHHHH---T------------------------CHHH--HSSTTTGG
T ss_pred CCCccc-cccHHHHHhccCCCCC--CCHHHHHHHHHHh---C------------------------cHHH--HHhCcccc
Confidence 988555 6799999987642211 1111122211111 0 0111 23578889
Q ss_pred ccccccccccCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhc
Q 001293 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (1106)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~ 392 (1106)
||.||+.+. .|||||||||+|||||+.+|+||+|||||+|||+.+...|.+.|++.. .++| ++.++|+...+ ..|
T Consensus 1162 dt~vge~G~-~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~--~~~t-vi~isH~l~~i-~~~ 1236 (1284)
T 3g5u_A 1162 NTRVGDKGT-QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR--EGRT-CIVIAHRLSTI-QNA 1236 (1284)
T ss_dssp GCBCSTTSC-SSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS--SSSC-EEEECSCTTGG-GSC
T ss_pred ccccCCCCC-ccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC--CCCE-EEEEecCHHHH-HcC
Confidence 999997654 699999999999999999999999999999999999999999998742 3444 55577877776 569
Q ss_pred CeEEEEcCCeEEEEcChHHHHH
Q 001293 393 DDIILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 393 D~iilL~~G~iv~~G~~~~~~~ 414 (1106)
|+|++|++|+++++|+++++++
T Consensus 1237 dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1237 DLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp SEEEEEETBEEEEEECHHHHHH
T ss_pred CEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999865
No 99
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=3.4e-34 Score=319.06 Aligned_cols=195 Identities=23% Similarity=0.371 Sum_probs=147.8
Q ss_pred eeeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccC
Q 001293 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1106)
Q Consensus 855 ~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1106)
.+.++|++|.. ..+|+||||+|++|+++||+||||||||||+++|+|... +..|+|.++|
T Consensus 40 ~l~~~~l~~~~---------------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g--- 99 (290)
T 2bbs_A 40 SLSFSNFSLLG---------------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 99 (290)
T ss_dssp ----------C---------------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS---
T ss_pred eEEEEEEEEcC---------------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC---
Confidence 57888887642 248999999999999999999999999999999999876 6789999988
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccc-------cCCCCCCC
Q 001293 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL-------VGLPGVSG 1007 (1106)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~-------~g~~g~~~ 1007 (1106)
.++|++|++.+++. ||+||+. +. . ... ..+.++++.+++.+..+.. .+. .+.+
T Consensus 100 -------~i~~v~Q~~~l~~~-tv~enl~-~~--~----~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~ 159 (290)
T 2bbs_A 100 -------RISFCSQNSWIMPG-TIKENII-GV--S----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGE-GGIT 159 (290)
T ss_dssp -------CEEEECSSCCCCSS-BHHHHHH-TT--C----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CC
T ss_pred -------EEEEEeCCCccCcc-cHHHHhh-Cc--c----cch----HHHHHHHHHhChHHHHHhccccccchhcC-ccCc
Confidence 38999999988774 9999997 32 1 111 1234456666665433221 111 1367
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCeEEEEecCccHHHHHhcCeEEEEecCCE
Q 001293 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1106)
Q Consensus 1008 LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l-~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1086 (1106)
||||||||++|||||+.+|++|||||||+|||+.++..+++.+ +++. +|+|||++||+++ .+ +.||++++|++ |+
T Consensus 160 LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~-~~-~~~d~i~~l~~-G~ 235 (290)
T 2bbs_A 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHE-GS 235 (290)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH-HH-HcCCEEEEEEC-Ce
Confidence 9999999999999999999999999999999999999999974 4443 5899999999985 34 56999999986 68
Q ss_pred EEEecCC
Q 001293 1087 EIYVGPL 1093 (1106)
Q Consensus 1087 ~~~~g~~ 1093 (1106)
+++.|+.
T Consensus 236 i~~~g~~ 242 (290)
T 2bbs_A 236 SYFYGTF 242 (290)
T ss_dssp EEEEECH
T ss_pred EEEeCCH
Confidence 8888874
No 100
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=3.6e-34 Score=318.84 Aligned_cols=194 Identities=21% Similarity=0.300 Sum_probs=147.3
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHHH
Q 001293 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1106)
++|+|+|+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++| .++||+|++.+++ .||+|
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~-~tv~e 117 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQNSWIMP-GTIKE 117 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS----------CEEEECSSCCCCS-SBHHH
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC----------EEEEEeCCCccCc-ccHHH
Confidence 4899999999999999999999999999999999999998 99999998 3999999987777 59999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCCC
Q 001293 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1106)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1106)
|+. +... .. ....+. .+..+ .+..++. ++...++.++. ....||
T Consensus 118 nl~-~~~~----~~-~~~~~~---~~~~~------------------------l~~~l~~--~~~~~~~~~~~-~~~~LS 161 (290)
T 2bbs_A 118 NII-GVSY----DE-YRYRSV---IKACQ------------------------LEEDISK--FAEKDNIVLGE-GGITLS 161 (290)
T ss_dssp HHH-TTCC----CH-HHHHHH---HHHTT------------------------CHHHHHT--STTGGGCBC-----CCCC
T ss_pred Hhh-Cccc----ch-HHHHHH---HHHhC------------------------hHHHHHh--ccccccchhcC-ccCcCC
Confidence 997 4211 00 000000 00000 0111222 22334555553 356799
Q ss_pred hhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHH-HHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeEE
Q 001293 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL-RQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1106)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l-~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv 404 (1106)
|||||||+|||||+.+|++|||||||+|||+.++..+++.+ +++. .+ .+|+.++|+...+ ..||+|++|++|+++
T Consensus 162 gGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~-~tviivtHd~~~~-~~~d~i~~l~~G~i~ 237 (290)
T 2bbs_A 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--AN-KTRILVTSKMEHL-KKADKILILHEGSSY 237 (290)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TT-SEEEEECCCHHHH-HHSSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CC-CEEEEEecCHHHH-HcCCEEEEEECCeEE
Confidence 99999999999999999999999999999999999999864 4432 23 4555577777665 569999999999999
Q ss_pred EEcChHHHH
Q 001293 405 YQGPRELVL 413 (1106)
Q Consensus 405 ~~G~~~~~~ 413 (1106)
+.|+++++.
T Consensus 238 ~~g~~~~l~ 246 (290)
T 2bbs_A 238 FYGTFSELQ 246 (290)
T ss_dssp EEECHHHHH
T ss_pred EeCCHHHHh
Confidence 999998874
No 101
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=3.7e-31 Score=322.66 Aligned_cols=191 Identities=27% Similarity=0.305 Sum_probs=161.1
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHHHH
Q 001293 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRET 246 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (1106)
.|+++|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.+ .+.++|++|+....+.+||.|+
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~ 437 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW----------DLTVAYKPQYIKAEYEGTVYEL 437 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEE----------eeEEEEEecCccCCCCCcHHHH
Confidence 688999999999999999999999999999999999998 899976 2369999999877788999998
Q ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCCCh
Q 001293 247 LAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISG 326 (1106)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (1106)
+.+..... .. ....++.+++.+||.+..+..+ ..|||
T Consensus 438 ~~~~~~~~-----------~~---------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~LSG 474 (607)
T 3bk7_A 438 LSKIDSSK-----------LN---------------------------SNFYKTELLKPLGIIDLYDRNV-----EDLSG 474 (607)
T ss_dssp HHHHHHHH-----------HH---------------------------CHHHHHHTHHHHTCTTTTTSBG-----GGCCH
T ss_pred HHhhhccC-----------CC---------------------------HHHHHHHHHHHcCCchHhcCCh-----hhCCH
Confidence 86531100 00 0123566788999987777655 46999
Q ss_pred hhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcC--CeEE
Q 001293 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD--GQIV 404 (1106)
Q Consensus 327 GqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~--G~iv 404 (1106)
||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++..+ .+|+.++|+..++..+||+|++|++ |+++
T Consensus 475 Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~ 553 (607)
T 3bk7_A 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE-KTALVVEHDVLMIDYVSDRLIVFEGEPGRHG 553 (607)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEcCCcceEE
Confidence 999999999999999999999999999999999999999999865334 4555688999999999999999986 8889
Q ss_pred EEcChHHHHH
Q 001293 405 YQGPRELVLE 414 (1106)
Q Consensus 405 ~~G~~~~~~~ 414 (1106)
..|+++++..
T Consensus 554 ~~g~p~~~~~ 563 (607)
T 3bk7_A 554 RALPPMGMRE 563 (607)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
No 102
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=4.5e-31 Score=318.93 Aligned_cols=191 Identities=26% Similarity=0.294 Sum_probs=159.7
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHHHH
Q 001293 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRET 246 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (1106)
.|+++|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.+ ...++||+|+....+.+||.|+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~ 367 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW----------DLTVAYKPQYIKADYEGTVYEL 367 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE----------CceEEEEecCCcCCCCCcHHHH
Confidence 688999999999999999999999999999999999998 899975 2369999998877788999998
Q ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCCCh
Q 001293 247 LAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISG 326 (1106)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (1106)
+....... .. ....++.+++.+||.+..+..+ ..|||
T Consensus 368 ~~~~~~~~-----~~---------------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~LSG 404 (538)
T 1yqt_A 368 LSKIDASK-----LN---------------------------------SNFYKTELLKPLGIIDLYDREV-----NELSG 404 (538)
T ss_dssp HHHHHHHH-----HT---------------------------------CHHHHHHTTTTTTCGGGTTSBG-----GGCCH
T ss_pred HHhhhccC-----CC---------------------------------HHHHHHHHHHHcCChhhhcCCh-----hhCCH
Confidence 76431100 00 0113456788899987666555 46999
Q ss_pred hhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcC--CeEE
Q 001293 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD--GQIV 404 (1106)
Q Consensus 327 GqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~--G~iv 404 (1106)
||||||+||++|+.+|++|||||||+|||..++..+.+.|++++...+. +|+.++|+..++..+||+|++|++ |+++
T Consensus 405 Ge~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~-tvi~vsHd~~~~~~~~drv~vl~~~~~~~~ 483 (538)
T 1yqt_A 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK-TALVVEHDVLMIDYVSDRLMVFEGEPGKYG 483 (538)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHhCCEEEEEeCCcceEe
Confidence 9999999999999999999999999999999999999999988643444 555688999999999999999986 8899
Q ss_pred EEcChHHHHH
Q 001293 405 YQGPRELVLE 414 (1106)
Q Consensus 405 ~~G~~~~~~~ 414 (1106)
..|+++++..
T Consensus 484 ~~g~~~~~~~ 493 (538)
T 1yqt_A 484 RALPPMGMRE 493 (538)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
No 103
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=1.3e-30 Score=313.87 Aligned_cols=192 Identities=19% Similarity=0.197 Sum_probs=158.5
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHHHH
Q 001293 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRET 246 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (1106)
.|+++|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++|. .++|++|+....+.+||+||
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~~---------~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEKQ---------ILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSCC---------CEEEECSSCCCCCSSBHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCe---------eeEeechhcccccCCCHHHH
Confidence 577788999999999999999999999999999999998 999997653 58999998766778999999
Q ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCCCh
Q 001293 247 LAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISG 326 (1106)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (1106)
+.+.... .... ....++.+++.+||.+..+..+ ..|||
T Consensus 351 l~~~~~~--~~~~-----------------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~LSG 388 (538)
T 3ozx_A 351 LENASKD--ALST-----------------------------------SSWFFEEVTKRLNLHRLLESNV-----NDLSG 388 (538)
T ss_dssp HHHHCSS--TTCT-----------------------------------TSHHHHHTTTTTTGGGCTTSBG-----GGCCH
T ss_pred HHHhhhh--ccch-----------------------------------hHHHHHHHHHHcCCHHHhcCCh-----hhCCH
Confidence 9874210 0000 0112456678889987776555 46999
Q ss_pred hhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcC--CeEE
Q 001293 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD--GQIV 404 (1106)
Q Consensus 327 GqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~--G~iv 404 (1106)
||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++. .+++|+.++|+..++..+||+|++|++ |.+.
T Consensus 389 Gq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~-~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~ 467 (538)
T 3ozx_A 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRE-RKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAG 467 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEeCCcceec
Confidence 9999999999999999999999999999999999999999998764 345566689999999999999999986 6677
Q ss_pred EEcChHHHH
Q 001293 405 YQGPRELVL 413 (1106)
Q Consensus 405 ~~G~~~~~~ 413 (1106)
..|++.++.
T Consensus 468 ~~~~~~~~~ 476 (538)
T 3ozx_A 468 LATSPVTLK 476 (538)
T ss_dssp EECCCEEHH
T ss_pred cCCChHHHH
Confidence 777765543
No 104
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.1e-30 Score=310.68 Aligned_cols=192 Identities=24% Similarity=0.238 Sum_probs=158.7
Q ss_pred eeeeceeEEEeCC-----eEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCC
Q 001293 166 TILKDVSGVIKPG-----RLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGE 240 (1106)
Q Consensus 166 ~iL~~vs~~i~~G-----~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 240 (1106)
.+++|+|+.+++| |+++|+|||||||||||++|+|+++|+ +|+. + ....++|++|+......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~----~~~~i~~~~q~~~~~~~ 427 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I----PKLNVSMKPQKIAPKFP 427 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C----CSCCEEEECSSCCCCCC
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c----cCCcEEEecccccccCC
Confidence 4789999999999 779999999999999999999999998 7862 1 13469999998776777
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccc
Q 001293 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1106)
.||+|++.... .+... ....++.+++.+||.+.++..+
T Consensus 428 ~tv~e~~~~~~--~~~~~------------------------------------~~~~~~~~l~~l~l~~~~~~~~---- 465 (608)
T 3j16_B 428 GTVRQLFFKKI--RGQFL------------------------------------NPQFQTDVVKPLRIDDIIDQEV---- 465 (608)
T ss_dssp SBHHHHHHHHC--SSTTT------------------------------------SHHHHHHTHHHHTSTTTSSSBS----
T ss_pred ccHHHHHHHHh--hcccc------------------------------------cHHHHHHHHHHcCChhhhcCCh----
Confidence 89999875422 11000 0112456788999988777555
Q ss_pred ccCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001293 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1106)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~ 400 (1106)
..|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|+++.+..+. +|+.++|+..++..++|+|++|++
T Consensus 466 -~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~-tviivtHdl~~~~~~aDrvivl~~ 543 (608)
T 3j16_B 466 -QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKK-TAFIVEHDFIMATYLADKVIVFEG 543 (608)
T ss_dssp -SSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHCSEEEECEE
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHhCCEEEEEeC
Confidence 469999999999999999999999999999999999999999999998654444 455689999999999999999986
Q ss_pred --CeEEEEcChHHHHH
Q 001293 401 --GQIVYQGPRELVLE 414 (1106)
Q Consensus 401 --G~iv~~G~~~~~~~ 414 (1106)
|+++..|++++++.
T Consensus 544 ~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 544 IPSKNAHARAPESLLT 559 (608)
T ss_dssp ETTTEEECCCCEEHHH
T ss_pred CCCeEEecCChHHHhh
Confidence 99999999998865
No 105
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.96 E-value=2.6e-29 Score=315.56 Aligned_cols=193 Identities=21% Similarity=0.268 Sum_probs=156.4
Q ss_pred eeeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccC
Q 001293 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1106)
Q Consensus 855 ~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1106)
.+...|+++.|+ ++.+|+|+||+|++|+++||+|||||||||||++|+| |.| +|.+.
T Consensus 435 ~L~~~~ls~~yg-------------~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~ 491 (986)
T 2iw3_A 435 DLCNCEFSLAYG-------------AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPT 491 (986)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCC
T ss_pred eeEEeeEEEEEC-------------CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCcc
Confidence 466678887763 3579999999999999999999999999999999995 111 34433
Q ss_pred CcccccceEEEEccCC-CCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCc-cccccccCCCCCCCCCHHH
Q 001293 935 KQETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQ 1012 (1106)
Q Consensus 935 ~~~~~~~~~gyv~q~~-~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~g~~g~~~LSgGq 1012 (1106)
... ..++|++|+. ..++.+||.|++.+ ... .. ++.++++++.+++. +..+..+ .+|||||
T Consensus 492 ~~~---~~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~-----~~LSGGq 553 (986)
T 2iw3_A 492 QEE---CRTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPI-----SALSGGW 553 (986)
T ss_dssp TTT---SCEEETTCCCCCCCTTSBHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBG-----GGCCHHH
T ss_pred ccc---eeEEEEcccccccccCCcHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCc-----ccCCHHH
Confidence 211 2368999874 56778999999975 111 11 34578899999994 5666653 5699999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeEEEEecCCEEE-Eec
Q 001293 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVG 1091 (1106)
Q Consensus 1013 rqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~-~~g 1091 (1106)
|||++|||+|+.+|+||||||||+|||+.++..+++.|++ .|+|||++|||++ .+...||++++|++ |+++ |.|
T Consensus 554 kQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~-G~iv~~~G 628 (986)
T 2iw3_A 554 KMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEG-LKLRKYKG 628 (986)
T ss_dssp HHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEES
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEEC-CeeecCCC
Confidence 9999999999999999999999999999999999999997 5899999999987 57789999999986 5665 778
Q ss_pred CC
Q 001293 1092 PL 1093 (1106)
Q Consensus 1092 ~~ 1093 (1106)
+.
T Consensus 629 ~~ 630 (986)
T 2iw3_A 629 NF 630 (986)
T ss_dssp CH
T ss_pred CH
Confidence 65
No 106
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.96 E-value=1e-30 Score=316.70 Aligned_cols=153 Identities=18% Similarity=0.178 Sum_probs=114.4
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhh
Q 001293 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWL 968 (1106)
Q Consensus 889 ~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~ 968 (1106)
+.+++|++++|+|+||||||||++.++|.... .|. +.+.|++|++. ..+.++. .
T Consensus 276 g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~----~~l~~~~-----~ 329 (525)
T 1tf7_A 276 GGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESR----AQLLRNA-----Y 329 (525)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCH----HHHHHHH-----H
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCH----HHHHHHH-----H
Confidence 38999999999999999999999999985321 121 12455566531 1222222 1
Q ss_pred cCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH-----HH
Q 001293 969 RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-----AA 1043 (1106)
Q Consensus 969 r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~-----~~ 1043 (1106)
+.. .+ +++ +...++..+.+.. +..||+||+||+++|+++..+|++|++| ||+|||.. .+
T Consensus 330 ~~g--~~-------~~~-~~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~ 393 (525)
T 1tf7_A 330 SWG--MD-------FEE-MERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFR 393 (525)
T ss_dssp TTS--CC-------HHH-HHHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHH
T ss_pred HcC--CC-------HHH-HHhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHH
Confidence 111 11 112 2245565555543 3569999999999999999999999999 99999999 99
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCc----------cHHHHHhcCeEEEEecC
Q 001293 1044 AIVMRTVRNTVDTGRTVVCTIHQP----------SIDIFEAFDELFLMKRG 1084 (1106)
Q Consensus 1044 ~~i~~~l~~~~~~g~tvi~~~H~~----------~~~~~~~~D~v~~l~~G 1084 (1106)
..+.++++.+.+.|.|||+|+|++ . .+...+|++++|++|
T Consensus 394 ~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~-~l~~~~D~vi~L~~g 443 (525)
T 1tf7_A 394 QFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDS-HISTITDTIILLQYV 443 (525)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSS-CCTTTCSEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEEECcccccCcccccCc-ccceeeeEEEEEEEE
Confidence 999999999988899999999997 4 356689999999875
No 107
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.96 E-value=2.5e-29 Score=313.31 Aligned_cols=204 Identities=22% Similarity=0.289 Sum_probs=132.5
Q ss_pred EEeeeeEEEEeCCeEEEEEcCCCCcHHHHH---------------------HHHhCCCCCC--ee---eeEEEEcCccCC
Q 001293 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLM---------------------DVLAGRKTGG--YI---TGNITISGYPKK 935 (1106)
Q Consensus 882 ~~L~~is~~v~~G~~~al~G~nGaGKSTLl---------------------~~L~g~~~~~--~~---~G~i~i~g~~~~ 935 (1106)
.+|+||||+|++||++||+||||||||||+ +++.|...++ .+ .|.|.++|.+..
T Consensus 32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~ 111 (670)
T 3ux8_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTS 111 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC--
T ss_pred cceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhh
Confidence 479999999999999999999999999997 6666644321 11 356777776543
Q ss_pred cccccceEEEEccCCC-------------------CCCCCCHHHHHHHHHhhcCCCCCChHHHH------HHHHHHHHHc
Q 001293 936 QETFARISGYCEQNDI-------------------HSPFVTIYESLLFSAWLRLSPEVDSETRK------MFIDEVMELV 990 (1106)
Q Consensus 936 ~~~~~~~~gyv~q~~~-------------------~~~~~tv~e~l~~~~~~r~~~~~~~~~~~------~~v~~~l~~~ 990 (1106)
.. .++.+||++|... .++.+||+||+.+...+..... ..+... ....++++.+
T Consensus 112 ~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 112 RN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp ----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHHT
T ss_pred cc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHHc
Confidence 21 1233445554332 2356799999987532221110 000000 0112358888
Q ss_pred CCccc-cccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCc
Q 001293 991 ELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1067 (1106)
Q Consensus 991 ~l~~~-~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~--illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 1067 (1106)
+|.+. .++. +.+|||||||||+|||||+.+|+ ||||||||+|||+.++..+++.|+++.++|.|||+||||+
T Consensus 190 gL~~~~~~~~-----~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 190 GLDYLTLSRS-----AGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp TCTTCCTTCB-----GGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred CCchhhhcCC-----cccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 88764 3554 35799999999999999999998 9999999999999999999999999988899999999998
Q ss_pred cHHHHHhcCeEEEEe-----cCCEEEEecCCC
Q 001293 1068 SIDIFEAFDELFLMK-----RGGQEIYVGPLG 1094 (1106)
Q Consensus 1068 ~~~~~~~~D~v~~l~-----~Gg~~~~~g~~g 1094 (1106)
+ ....||++++|. ++|++++.|+..
T Consensus 265 ~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~ 294 (670)
T 3ux8_A 265 D--TMLAADYLIDIGPGAGIHGGEVVAAGTPE 294 (670)
T ss_dssp H--HHHHCSEEEEECSSSGGGCCSEEEEECHH
T ss_pred H--HHhhCCEEEEecccccccCCEEEEecCHH
Confidence 6 456799999993 357899999753
No 108
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.92 E-value=1.1e-24 Score=273.91 Aligned_cols=110 Identities=25% Similarity=0.300 Sum_probs=90.6
Q ss_pred HHHHHHHHcCCccccccccccccccCCChhhhHHHHHHHHHhcCC---ccceeecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 001293 298 ITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA---LALFMDEISTGLDSSTTFQIVNCLRQNIHINS 374 (1106)
Q Consensus 298 ~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p---~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~ 374 (1106)
.+..+|+.+||... .+| +....|||||||||+||++|+.+| ++|||||||+|||+.+...+++.|+++.. .+
T Consensus 784 ~~~~~L~~vGL~~~---~lg-q~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G 858 (916)
T 3pih_A 784 RTLQVLHDVGLGYV---KLG-QPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RG 858 (916)
T ss_dssp HHHHHHHHTTGGGS---BTT-CCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHcCCchh---hcc-CCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cC
Confidence 35567889999642 222 345579999999999999999865 79999999999999999999999999864 34
Q ss_pred CeEEEEEecChhHHHhhcCeEEEE------cCCeEEEEcChHHHHH
Q 001293 375 GTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVLE 414 (1106)
Q Consensus 375 ~t~vi~i~q~~~~~~~~~D~iilL------~~G~iv~~G~~~~~~~ 414 (1106)
.| ||.++|+...+ ..||+|++| ++|+|+++|+++++.+
T Consensus 859 ~T-VIvI~HdL~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 859 NT-VIVIEHNLDVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp CE-EEEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred CE-EEEEeCCHHHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 44 55578887665 569999999 8999999999999853
No 109
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.92 E-value=4.3e-25 Score=274.93 Aligned_cols=106 Identities=25% Similarity=0.277 Sum_probs=89.7
Q ss_pred HHHHHHcCCcc-ccccccccccccCCChhhhHHHHHHHHHhcCC---ccceeecCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 001293 300 DYYLKVLGLDV-CADTMVGDEMIRGISGGQKKRVTTGEMMVGPA---LALFMDEISTGLDSSTTFQIVNCLRQNIHINSG 375 (1106)
Q Consensus 300 ~~~l~~lgL~~-~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p---~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~ 375 (1106)
..+|+.+||.. ..+.. +..|||||||||+||++|+.+| ++|||||||+|||+.+...+++.|+++.. .+
T Consensus 826 ~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G- 898 (972)
T 2r6f_A 826 LETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NG- 898 (972)
T ss_dssp HHHHHHTTCSSSBTTCC-----GGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHcCCCcccccCc-----hhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CC-
Confidence 46789999975 44443 4569999999999999999764 99999999999999999999999998864 34
Q ss_pred eEEEEEecChhHHHhhcCeEEEE------cCCeEEEEcChHHHH
Q 001293 376 TAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (1106)
Q Consensus 376 t~vi~i~q~~~~~~~~~D~iilL------~~G~iv~~G~~~~~~ 413 (1106)
.+|+.++|+..++ ..||+|++| .+|++++.|+++++.
T Consensus 899 ~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 899 DTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp CEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred CEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 4555578887775 689999999 789999999999875
No 110
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.91 E-value=1e-24 Score=271.99 Aligned_cols=108 Identities=20% Similarity=0.259 Sum_probs=92.2
Q ss_pred HHHHHHHHcCCccc-cccccccccccCCChhhhHHHHHHHHHhcC---CccceeecCCCCCCHHHHHHHHHHHHHHHHhc
Q 001293 298 ITDYYLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGP---ALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 373 (1106)
Q Consensus 298 ~~~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqrqRvsia~al~~~---p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~ 373 (1106)
.+..+|+.+||... .+. .+..|||||||||+||++|+.+ |++|||||||+|||..+...|++.|+++.. .
T Consensus 709 ~~~~~L~~~gL~~~~l~~-----~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~ 782 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQ-----PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-A 782 (842)
T ss_dssp HHHHHHHHTTCTTSBTTC-----CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCCcccccC-----CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C
Confidence 45778999999753 333 3457999999999999999996 799999999999999999999999998864 3
Q ss_pred CCeEEEEEecChhHHHhhcCeEEEE------cCCeEEEEcChHHHH
Q 001293 374 SGTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (1106)
Q Consensus 374 ~~t~vi~i~q~~~~~~~~~D~iilL------~~G~iv~~G~~~~~~ 413 (1106)
+.+||.++|+..++ ..||+|++| ++|++++.|+++++.
T Consensus 783 -G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 783 -GNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp -TCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred -CCEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 44556688888888 889999999 799999999999874
No 111
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.91 E-value=1.3e-24 Score=271.65 Aligned_cols=108 Identities=25% Similarity=0.266 Sum_probs=90.5
Q ss_pred HHHHHHHcCCcc-ccccccccccccCCChhhhHHHHHHHHHhcCC---ccceeecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 001293 299 TDYYLKVLGLDV-CADTMVGDEMIRGISGGQKKRVTTGEMMVGPA---LALFMDEISTGLDSSTTFQIVNCLRQNIHINS 374 (1106)
Q Consensus 299 ~~~~l~~lgL~~-~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p---~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~ 374 (1106)
...+|+.+||.. ..+. .+..|||||||||+||++|+.+| ++|||||||+|||+.+...+++.|++++. .
T Consensus 843 ~~~~L~~lgL~~~~l~~-----~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~- 915 (993)
T 2ygr_A 843 YLRTLVDVGLGYVRLGQ-----PAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVD-K- 915 (993)
T ss_dssp HHHHHHHTTGGGSBTTC-----CGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-
T ss_pred HHHHHHHcCCCcccccC-----ccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C-
Confidence 356789999975 3443 34569999999999999999864 99999999999999999999999998864 3
Q ss_pred CeEEEEEecChhHHHhhcCeEEEE------cCCeEEEEcChHHHHH
Q 001293 375 GTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVLE 414 (1106)
Q Consensus 375 ~t~vi~i~q~~~~~~~~~D~iilL------~~G~iv~~G~~~~~~~ 414 (1106)
+.+||.++|+..++ ..||+|++| .+|++++.|+++++..
T Consensus 916 G~TVIvisHdl~~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 916 GNTVIVIEHNLDVI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp TCEEEEECCCHHHH-TTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred CCEEEEEcCCHHHH-HhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 44555578887775 789999999 7899999999998754
No 112
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.91 E-value=6.1e-27 Score=276.51 Aligned_cols=185 Identities=11% Similarity=0.046 Sum_probs=142.9
Q ss_pred eceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCcee-E-EEEcCccCCCCcccceEEEEcCCCC---CCCCCCH
Q 001293 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSG-T-VTYNGHDMDEFVPQRTAAYISQHDN---HIGEMTV 243 (1106)
Q Consensus 169 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G-~-V~~~G~~~~~~~~~~~~~yv~Q~d~---~~~~lTV 243 (1106)
.++|+.+++|++++|+||||||||||+++|+|++.|+ +| + |.++|. +++.++|++|+.. +...+||
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 3799999999999999999999999999999999887 99 9 999982 3567999999873 4566899
Q ss_pred HHHHHHHHHh-cCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccc
Q 001293 244 RETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1106)
Q Consensus 244 ~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1106)
+||+ |+... .+. .. . ..+..+++.+||++..+ ..
T Consensus 200 ~eni-~~~~~~~~~-~~------------~------------------------~~~~~ll~~~gl~~~~~-------~~ 234 (460)
T 2npi_A 200 QLPT-WGQSLTSGA-TL------------L------------------------HNKQPMVKNFGLERINE-------NK 234 (460)
T ss_dssp TCTT-CSCBCBSSC-CS------------S------------------------CCBCCEECCCCSSSGGG-------CH
T ss_pred hhhh-cccccccCc-ch------------H------------------------HHHHHHHHHhCCCcccc-------hh
Confidence 9999 75432 110 00 0 00122355678876554 34
Q ss_pred CCChhhhHHHHHHHH--HhcCCcc----ceeec-CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChh-----HHHh
Q 001293 323 GISGGQKKRVTTGEM--MVGPALA----LFMDE-ISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP-----ETYD 390 (1106)
Q Consensus 323 ~LSGGqrqRvsia~a--l~~~p~v----llLDE-ptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~-----~~~~ 390 (1106)
.|||||||||+||++ |+.+|++ ||||| ||++||+. ...+.+.+++ .+.++|+++|++.+ ++..
T Consensus 235 ~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~----~~~tviiVth~~~~~l~~~~~~~ 309 (460)
T 2npi_A 235 DLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK----LNVNIMLVLCSETDPLWEKVKKT 309 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH----TTCCEEEEECCSSCTHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH----hCCCEEEEEccCchhhhHHHHHH
Confidence 699999999999999 9999999 99999 99999999 4445555543 35666665555441 6668
Q ss_pred hcCe-----EEEEc-CCeEEEEcChHHHH
Q 001293 391 LFDD-----IILLS-DGQIVYQGPRELVL 413 (1106)
Q Consensus 391 ~~D~-----iilL~-~G~iv~~G~~~~~~ 413 (1106)
++|+ |++|+ +|+++ .|+++++.
T Consensus 310 ~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 310 FGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp HHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred hcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 9999 99999 99999 99987663
No 113
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.91 E-value=1.6e-24 Score=255.24 Aligned_cols=202 Identities=17% Similarity=0.161 Sum_probs=138.6
Q ss_pred EEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC------------------------------------Ceeee
Q 001293 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG------------------------------------GYITG 925 (1106)
Q Consensus 882 ~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~------------------------------------~~~~G 925 (1106)
.+|++++++|.+| +++|+|+|||||||||++|.+...+ ....|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3689999999999 9999999999999999999653321 01257
Q ss_pred EEEEcCccCCccc---c-cceEEEEccCCCCCCCCCHHHHHHHHHhhcC-----------------------CCCCC---
Q 001293 926 NITISGYPKKQET---F-ARISGYCEQNDIHSPFVTIYESLLFSAWLRL-----------------------SPEVD--- 975 (1106)
Q Consensus 926 ~i~i~g~~~~~~~---~-~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~-----------------------~~~~~--- 975 (1106)
.+.+||.+..... + ...+++++|++.+... +..+...|..+... .....
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 8999998875422 2 2348999998766542 44444333211100 00000
Q ss_pred -------------------------------hHHHHHHHHHHHHHcCCcccc----------------cc---ccCCCC-
Q 001293 976 -------------------------------SETRKMFIDEVMELVELNPLR----------------QS---LVGLPG- 1004 (1106)
Q Consensus 976 -------------------------------~~~~~~~v~~~l~~~~l~~~~----------------~~---~~g~~g- 1004 (1106)
.+.....+.+.++.+++.... +. .....+
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 000112344455555543210 00 000000
Q ss_pred -----CCC-CCHHHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcC
Q 001293 1005 -----VSG-LSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1076 (1106)
Q Consensus 1005 -----~~~-LSgGqrqrl~iA~aL~~~p--~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D 1076 (1106)
+.. ||||||||++||++|+.+| +||||||||+|||+.++..|.+.|+++. +|+|||+|||++. +...||
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~--~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQ--IAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHH--HHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHH--HHhhcC
Confidence 111 7999999999999999999 9999999999999999999999999997 6899999999984 567899
Q ss_pred eEEEE----ecCCEEEE
Q 001293 1077 ELFLM----KRGGQEIY 1089 (1106)
Q Consensus 1077 ~v~~l----~~Gg~~~~ 1089 (1106)
++++| ++| +++.
T Consensus 364 ~i~~l~k~~~~G-~~~~ 379 (415)
T 4aby_A 364 HHYKVEKQVEDG-RTVS 379 (415)
T ss_dssp EEEEEEEEEETT-EEEE
T ss_pred eEEEEEEeccCC-ceEE
Confidence 99999 764 5543
No 114
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.90 E-value=7.8e-27 Score=275.59 Aligned_cols=182 Identities=14% Similarity=0.049 Sum_probs=141.4
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeee-E-EEEcCccCCcccccceEEEEccCCC---CCCCCCHHH
Q 001293 886 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-N-ITISGYPKKQETFARISGYCEQNDI---HSPFVTIYE 960 (1106)
Q Consensus 886 ~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G-~-i~i~g~~~~~~~~~~~~gyv~q~~~---~~~~~tv~e 960 (1106)
++|+++++|++++|+||||||||||+++|+|... +..| + |.++|. .++.++|++|+.. +.+.+|++|
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~e 201 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQL 201 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTTC
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC------ccCCeeeeccchhhcccccccchhh
Confidence 7899999999999999999999999999999875 4678 8 999982 2456899999874 445679999
Q ss_pred HHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHH--HhcCCCe----EEEeC-
Q 001293 961 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVE--LVANPSI----IFMDE- 1033 (1106)
Q Consensus 961 ~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~a--L~~~p~i----llLDE- 1033 (1106)
|+ |+........ . ++.+.++++.+++.+..+ +.+|||||||||+|||+ |+.+|++ |||||
T Consensus 202 ni-~~~~~~~~~~--~---~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEp 268 (460)
T 2npi_A 202 PT-WGQSLTSGAT--L---LHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTP 268 (460)
T ss_dssp TT-CSCBCBSSCC--S---SCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECC
T ss_pred hh-cccccccCcc--h---HHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCC
Confidence 88 6543211110 0 112345677777776554 24699999999999999 9999999 99999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCcc--H---HHHHhcCe-----EEEEecCCEEEEecCC
Q 001293 1034 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS--I---DIFEAFDE-----LFLMKRGGQEIYVGPL 1093 (1106)
Q Consensus 1034 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~--~---~~~~~~D~-----v~~l~~Gg~~~~~g~~ 1093 (1106)
||++||+. ...+.+.++++ +.|+|+++|+.+ . ++..++|+ +++|++.|+++ .|+.
T Consensus 269 Pts~LD~~-~~~l~~l~~~~---~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~ 333 (460)
T 2npi_A 269 SISQLDEN-LAELHHIIEKL---NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDD 333 (460)
T ss_dssp CGGGSCSS-CHHHHHHHHHT---TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCH
T ss_pred cccccChh-HHHHHHHHHHh---CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCH
Confidence 99999999 66666666543 789999999976 3 35578999 99998345666 6764
No 115
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.90 E-value=1.7e-23 Score=246.52 Aligned_cols=236 Identities=15% Similarity=0.136 Sum_probs=147.3
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-----------------------------------CCce
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT-----------------------------------LKVS 209 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~-----------------------------------~~~~ 209 (1106)
..+|+++|+.+.+| +++|+|||||||||||++|.+...+. ..-+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 45799999999999 99999999999999999997765420 0116
Q ss_pred eEEEEcCccCCCCcc----cceEEEEcCCCCCCCCCCHHHHHHHHHHhcCC-----CchhhhhHHHHHHHHhcCCCCCC-
Q 001293 210 GTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEMTVRETLAFSARCQGV-----GTRYEMLTELARREKAAGIKPDP- 279 (1106)
Q Consensus 210 G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~- 279 (1106)
|++.+||.+++.... ...+++++|++.++. .+..+...|--..... ...+....+..+..... .....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l-~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l-~~~~~~ 204 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL-LSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERL-QASESS 204 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTT-SSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCcccccc-cCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHH-Hhhhhh
Confidence 889999998754222 134899999875544 3666665553211100 00000011111000000 00000
Q ss_pred ----------ChHHHHHHHh-----------hhhhhHHHHHHHHHHHcCCcccc----------------cc---cccc-
Q 001293 280 ----------DIDVYMKAIA-----------TEGQEANVITDYYLKVLGLDVCA----------------DT---MVGD- 318 (1106)
Q Consensus 280 ----------d~~~~~~~~~-----------~~~~~~~~~~~~~l~~lgL~~~~----------------dt---~vg~- 318 (1106)
+++.+.+... ......+..+...++.++++... +. .+..
T Consensus 205 ~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 284 (415)
T 4aby_A 205 KHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSAN 284 (415)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESS
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcC
Confidence 0111111000 01112233455667777765411 00 1111
Q ss_pred -----ccccC-CChhhhHHHHHHHHHhcCC--ccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHh
Q 001293 319 -----EMIRG-ISGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390 (1106)
Q Consensus 319 -----~~~~~-LSGGqrqRvsia~al~~~p--~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~ 390 (1106)
..++. |||||||||+||++|+.+| ++|||||||+|||+.+...+.+.|+++. .+.++ +.++|+. ++.+
T Consensus 285 ~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~v-i~itH~~-~~~~ 360 (415)
T 4aby_A 285 PGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQV-LVVTHLA-QIAA 360 (415)
T ss_dssp SSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEE-EEECSCH-HHHT
T ss_pred CCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEE-EEEeCcH-HHHh
Confidence 11222 6999999999999999999 9999999999999999999999999875 24454 4467775 6678
Q ss_pred hcCeEEEE----cCCeEEEEc
Q 001293 391 LFDDIILL----SDGQIVYQG 407 (1106)
Q Consensus 391 ~~D~iilL----~~G~iv~~G 407 (1106)
.||++++| .+|+++...
T Consensus 361 ~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 361 RAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp TCSEEEEEEEEEETTEEEEEE
T ss_pred hcCeEEEEEEeccCCceEEEE
Confidence 99999999 999987653
No 116
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.87 E-value=5.4e-22 Score=228.85 Aligned_cols=82 Identities=22% Similarity=0.357 Sum_probs=74.2
Q ss_pred CCCCCHHHHHHHHHHHHHh------cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeE
Q 001293 1005 VSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1078 (1106)
Q Consensus 1005 ~~~LSgGqrqrl~iA~aL~------~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v 1078 (1106)
+.+||||||||++||+||+ .+|++|||||||+|||+.+...+++.|+++.+.|+|||++||+++ ..+.+|++
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~~ 354 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDRK 354 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSCE
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCEE
Confidence 3579999999999999999 799999999999999999999999999999888999999999985 46789999
Q ss_pred EEEecCCEEEE
Q 001293 1079 FLMKRGGQEIY 1089 (1106)
Q Consensus 1079 ~~l~~Gg~~~~ 1089 (1106)
++|++ |+++.
T Consensus 355 ~~l~~-G~i~~ 364 (365)
T 3qf7_A 355 LRITG-GVVVN 364 (365)
T ss_dssp EEEET-TEEC-
T ss_pred EEEEC-CEEEe
Confidence 99986 57653
No 117
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.87 E-value=1.3e-25 Score=238.29 Aligned_cols=142 Identities=15% Similarity=0.152 Sum_probs=97.4
Q ss_pred eEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcccccceEEEEccCCCCCCCCCHHH
Q 001293 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960 (1106)
Q Consensus 881 ~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~tv~e 960 (1106)
+.+|+|| ++|++++|+||||||||||+++|+|. . +..|+|............++.+||++|++ +|
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~--p~~G~I~~~~~~~~~~~~~~~ig~v~q~~--------~e 77 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A--LQSKQVSRIILTRPAVEAGEKLGFLPGTL--------NE 77 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H--HHTTSCSEEEEEECSCCTTCCCCSSCC------------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C--CcCCeeeeEEecCCchhhhcceEEecCCH--------HH
Confidence 4578885 89999999999999999999999997 5 34565532111111123456799999976 44
Q ss_pred HH-HHHH----hhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCC
Q 001293 961 SL-LFSA----WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1035 (1106)
Q Consensus 961 ~l-~~~~----~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPt 1035 (1106)
|+ .+.. .+... .. ...++++++. + | |||||++|||||+.+|+||||||||
T Consensus 78 nl~~~~~~~~~~~~~~--~~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDEPt 132 (208)
T 3b85_A 78 KIDPYLRPLHDALRDM--VE----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDEAQ 132 (208)
T ss_dssp --CTTTHHHHHHHTTT--SC----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECSGG
T ss_pred HHHHHHHHHHHHHHHh--cc----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeCCc
Confidence 44 2211 11110 11 1124444443 2 2 9999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEecCcc
Q 001293 1036 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1068 (1106)
Q Consensus 1036 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1068 (1106)
+| ++..+++.|+++ ++|+||| +|||++
T Consensus 133 s~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 133 NT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp GC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred cc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 99 888999999988 6689999 999975
No 118
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.86 E-value=7.5e-23 Score=210.76 Aligned_cols=150 Identities=14% Similarity=0.172 Sum_probs=103.7
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcccccceEEEEccCCCCCC-CCCHHHHHHH
Q 001293 886 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP-FVTIYESLLF 964 (1106)
Q Consensus 886 ~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~-~~tv~e~l~~ 964 (1106)
||||++++|++++|+||||||||||++++.+... .+++ . ...|+++|++.... .-++.+.+..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--------~~~~-----d---~~~g~~~~~~~~~~~~~~~~~~~~~ 64 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--------VISS-----D---FCRGLMSDDENDQTVTGAAFDVLHY 64 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--------EEEH-----H---HHHHHHCSSTTCGGGHHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--------EEcc-----H---HHHHHhcCcccchhhHHHHHHHHHH
Confidence 6899999999999999999999999999764211 1111 0 11256666542110 0011111111
Q ss_pred HHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH---
Q 001293 965 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR--- 1041 (1106)
Q Consensus 965 ~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~--- 1041 (1106)
..+.....+.....+.. ...|+|||||++||++++.+|++|+|||||++||+.
T Consensus 65 ------------------~~~~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 65 ------------------IVSKRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp ------------------HHHHHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred ------------------HHHHHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 11222234554444432 346999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCe
Q 001293 1042 -------------AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1077 (1106)
Q Consensus 1042 -------------~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~ 1077 (1106)
....+++.++++.++|.|+|+++|+++ ..+.+++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~--~~~~~~~ 167 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE--EVEEVVF 167 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH--HHHHEEE
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH--Hhhhhhh
Confidence 558889998888767999999999975 3344443
No 119
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.86 E-value=9.1e-22 Score=223.59 Aligned_cols=86 Identities=22% Similarity=0.221 Sum_probs=75.6
Q ss_pred CCCCHHHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeE--E
Q 001293 1006 SGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL--F 1079 (1106)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~----~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v--~ 1079 (1106)
..||+|||||++||++|+ .+|++|+|||||++||+.....+++.++++. +|.|||+|||+++ +.+.||++ +
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~v 294 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHGV 294 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEEE
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEEE
Confidence 579999999999999997 6889999999999999999999999999984 5899999999964 67889987 8
Q ss_pred EEecCCEEEEecCCC
Q 001293 1080 LMKRGGQEIYVGPLG 1094 (1106)
Q Consensus 1080 ~l~~Gg~~~~~g~~g 1094 (1106)
+|.+|...+....+.
T Consensus 295 ~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 295 TMVNGVSAIVPVEVE 309 (322)
T ss_dssp EESSSCEEEEECCC-
T ss_pred EEeCCEEEEEEEEcc
Confidence 888888887766654
No 120
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.85 E-value=3e-21 Score=222.69 Aligned_cols=84 Identities=23% Similarity=0.351 Sum_probs=72.1
Q ss_pred ccccCCChhhhHHHHHHHHHh------cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhc
Q 001293 319 EMIRGISGGQKKRVTTGEMMV------GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (1106)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~------~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~ 392 (1106)
+.+..|||||||||+||+||+ .+|++|||||||+|||+.+...+++.|+++.. .+.| |+.++|+... .+.+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~t-vi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKV-IVFITHDREF-SEAF 351 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSE-EEEEESCHHH-HTTC
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCE-EEEEecchHH-HHhC
Confidence 456689999999999999999 79999999999999999999999999998753 4444 5556777765 7889
Q ss_pred CeEEEEcCCeEEE
Q 001293 393 DDIILLSDGQIVY 405 (1106)
Q Consensus 393 D~iilL~~G~iv~ 405 (1106)
|+|++|++|+++.
T Consensus 352 d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 352 DRKLRITGGVVVN 364 (365)
T ss_dssp SCEEEEETTEEC-
T ss_pred CEEEEEECCEEEe
Confidence 9999999999974
No 121
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.84 E-value=1.1e-23 Score=223.37 Aligned_cols=150 Identities=15% Similarity=0.139 Sum_probs=96.0
Q ss_pred ccceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCC
Q 001293 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1106)
..+.+|+|| ++|++++|+|||||||||||++|+|. +|+ +|+|............++.++|++|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~~~~~~~~~~~~~~ig~v~q~~------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSRIILTRPAVEAGEKLGFLPGTL------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSEEEEEECSCCTTCCCCSSCC---------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeeeEEecCCchhhhcceEEecCCH-------
Confidence 445689996 89999999999999999999999999 887 787732111111112346799999965
Q ss_pred HHHHH-HHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccc
Q 001293 243 VRETL-AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1106)
Q Consensus 243 V~E~l-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
+||+ .+..... ... . .. .+ ...++.+++. |
T Consensus 76 -~enl~~~~~~~~---------~~~---~---~~-~~-----------------~~~~~~~l~~-g-------------- 106 (208)
T 3b85_A 76 -NEKIDPYLRPLH---------DAL---R---DM-VE-----------------PEVIPKLMEA-G-------------- 106 (208)
T ss_dssp -----CTTTHHHH---------HHH---T---TT-SC-----------------TTHHHHHHHT-T--------------
T ss_pred -HHHHHHHHHHHH---------HHH---H---Hh-cc-----------------HHHHHHHHHh-C--------------
Confidence 5666 3321000 000 0 00 00 0112333332 2
Q ss_pred cCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHH
Q 001293 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (1106)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~ 388 (1106)
+ ||||||+|||||+.+|++|||||||+| ++..+++.|+++ . . +++|+ ++|+..++
T Consensus 107 --l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~-~-g~tii-vtHd~~~~ 161 (208)
T 3b85_A 107 --I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G-F-GSKMV-VTGDITQV 161 (208)
T ss_dssp --S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C-T-TCEEE-EEEC----
T ss_pred --C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c-C-CCEEE-EECCHHHH
Confidence 2 999999999999999999999999999 888888988875 2 3 45556 77776544
No 122
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.82 E-value=7.8e-23 Score=237.21 Aligned_cols=172 Identities=15% Similarity=0.144 Sum_probs=132.2
Q ss_pred ceeeeceeEEEeCCe--------------------EEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcc
Q 001293 165 LTILKDVSGVIKPGR--------------------LTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~--------------------~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~ 224 (1106)
..+|+|||+.+++|+ +++|+||||||||||+|+|+|+++|+ +|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t---- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT---- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC--------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc----
Confidence 568999999999999 99999999999999999999999998 999999987643
Q ss_pred cceEEEEcCCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHH
Q 001293 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304 (1106)
Q Consensus 225 ~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~ 304 (1106)
+ .+|++|++ .++.+|++||+.++.. + ..++.+++
T Consensus 109 -~-~~~v~q~~-~~~~ltv~D~~g~~~~------~-------------------------------------~~~~~~L~ 142 (413)
T 1tq4_A 109 -M-ERHPYKHP-NIPNVVFWDLPGIGST------N-------------------------------------FPPDTYLE 142 (413)
T ss_dssp -C-CCEEEECS-SCTTEEEEECCCGGGS------S-------------------------------------CCHHHHHH
T ss_pred -e-eEEecccc-ccCCeeehHhhcccch------H-------------------------------------HHHHHHHH
Confidence 1 27899974 6778999988754310 0 01355677
Q ss_pred HcCCccccccccccccccCCChh--hhHHHHHHHHHhc----------CCccceeecCCCCCCHHHHHHHHHHHHHHHH-
Q 001293 305 VLGLDVCADTMVGDEMIRGISGG--QKKRVTTGEMMVG----------PALALFMDEISTGLDSSTTFQIVNCLRQNIH- 371 (1106)
Q Consensus 305 ~lgL~~~~dt~vg~~~~~~LSGG--qrqRvsia~al~~----------~p~vllLDEptsgLD~~~~~~i~~~l~~~~~- 371 (1106)
.++|.+.. .. .. |||| ||||+.||++|.. +|++++|||||+|||+.++.++++.|+++..
T Consensus 143 ~~~L~~~~-~~-----~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~ 215 (413)
T 1tq4_A 143 KMKFYEYD-FF-----II-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVN 215 (413)
T ss_dssp HTTGGGCS-EE-----EE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCccC-Ce-----EE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 88887542 21 22 9999 9999999999999 9999999999999999999999999988752
Q ss_pred ---hc---CCeEEEEEecChhH--HHhhcCeEE
Q 001293 372 ---IN---SGTAVISLLQPAPE--TYDLFDDII 396 (1106)
Q Consensus 372 ---~~---~~t~vi~i~q~~~~--~~~~~D~ii 396 (1106)
.. ..++|+..+|...+ +.+++|+|.
T Consensus 216 ~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 216 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 22 23555545555544 666666663
No 123
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.82 E-value=1e-20 Score=215.00 Aligned_cols=88 Identities=18% Similarity=0.240 Sum_probs=69.6
Q ss_pred cccCCChhhhHHHHHHHHHh----cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001293 320 MIRGISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1106)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~----~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1106)
.+..||||||||++||++|+ .+|++|+|||||++||+.....+.+.|+++. .+.+ |+.++|. .++.+.+|++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~-vi~~tH~-~~~~~~~d~~ 291 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQ-FIVITHN-KIVMEAADLL 291 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSE-EEEECCC-TTGGGGCSEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCe-EEEEECC-HHHHhhCceE
Confidence 34579999999999999997 6899999999999999999999999999863 3444 4556666 5788899987
Q ss_pred --EEEcCCeE-EEEcChHH
Q 001293 396 --ILLSDGQI-VYQGPREL 411 (1106)
Q Consensus 396 --ilL~~G~i-v~~G~~~~ 411 (1106)
++|.+|.. +.....++
T Consensus 292 ~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEEESSSCEEEEECCC--
T ss_pred EEEEEeCCEEEEEEEEcch
Confidence 88888865 44444444
No 124
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.82 E-value=1.5e-23 Score=233.72 Aligned_cols=157 Identities=17% Similarity=0.204 Sum_probs=116.8
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHHH
Q 001293 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1106)
++|+|+|+.|++|++++|+||||||||||+++|+|++ +|+| ++|++|++.++. .|++|
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I---------------~~~v~q~~~lf~-~ti~~ 171 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSV---------------LSFANHKSHFWL-ASLAD 171 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEE---------------ECGGGTTSGGGG-GGGTT
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceE---------------EEEecCcccccc-ccHHH
Confidence 4899999999999999999999999999999999998 5887 346778665544 58886
Q ss_pred -HHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCC
Q 001293 246 -TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1106)
Q Consensus 246 -~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1106)
||.|... .. + .+...++.+ |++..| | ..|
T Consensus 172 ~ni~~~~~-----~~-~------------------------------------~~~~~i~~~-L~~gld---g----~~L 201 (305)
T 2v9p_A 172 TRAALVDD-----AT-H------------------------------------ACWRYFDTY-LRNALD---G----YPV 201 (305)
T ss_dssp CSCEEEEE-----EC-H------------------------------------HHHHHHHHT-TTGGGG---T----CCE
T ss_pred HhhccCcc-----cc-H------------------------------------HHHHHHHHH-hHccCC---c----cCc
Confidence 7765310 00 0 011223333 444444 2 369
Q ss_pred ChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeEE
Q 001293 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1106)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv 404 (1106)
||||||| |||++.+|+||| ||+||+.+...|.. + +| ..++...+|+| +|++|+++
T Consensus 202 SgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----l------------tH-~~~~~~~aD~i-vl~~G~iv 256 (305)
T 2v9p_A 202 SIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----L------------HS-RVQTFRFEQPC-TDESGEQP 256 (305)
T ss_dssp ECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----G------------TT-TEEEEECCCCC-CCC---CC
T ss_pred CHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----H------------hC-CHHHHHhCCEE-EEeCCEEE
Confidence 9999999 999999999999 99999999887752 1 23 34456789999 99999999
Q ss_pred EEcChHHHHHHHHhC
Q 001293 405 YQGPRELVLEFFASM 419 (1106)
Q Consensus 405 ~~G~~~~~~~~f~~~ 419 (1106)
+.|+++++..+|.++
T Consensus 257 ~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 257 FNITDADWKSFFVRL 271 (305)
T ss_dssp CCCCHHHHHHHHHHS
T ss_pred EeCCHHHHHHHHHHH
Confidence 999999996666553
No 125
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.82 E-value=3.9e-23 Score=239.73 Aligned_cols=170 Identities=15% Similarity=0.168 Sum_probs=134.5
Q ss_pred EEeeeeEEEEeCCe--------------------EEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcccccc
Q 001293 882 VLLNGVSGAFRPGV--------------------LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR 941 (1106)
Q Consensus 882 ~~L~~is~~v~~G~--------------------~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~ 941 (1106)
.+|++||+++++|+ ++||+|+||||||||+|+|+|... +..|.|.++|.+.. +
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~--p~~GsI~~~g~~~t-----~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN--EEEGAAKTGVVEVT-----M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT--TSTTSCCCCC---------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC--ccCceEEECCeecc-----e
Confidence 47999999999999 999999999999999999999775 45788988886542 1
Q ss_pred eEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHH--HHHHHHHH
Q 001293 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE--QRKRLTIA 1019 (1106)
Q Consensus 942 ~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgG--qrqrl~iA 1019 (1106)
.+|++|++ .++.+|+.|++.++. . +..++++++.+++.+..... . ||+| ||||+.||
T Consensus 110 -~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~~~------~-lS~G~~~kqrv~la 168 (413)
T 1tq4_A 110 -ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDFFI------I-ISATRFKKNDIDIA 168 (413)
T ss_dssp -CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSEEE------E-EESSCCCHHHHHHH
T ss_pred -eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCCeE------E-eCCCCccHHHHHHH
Confidence 27899985 466788888765431 0 11267889999987653322 2 8999 99999999
Q ss_pred HHHhc----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-----hC----CCeEEEEecCccH-HHHHhcCeEE
Q 001293 1020 VELVA----------NPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DT----GRTVVCTIHQPSI-DIFEAFDELF 1079 (1106)
Q Consensus 1020 ~aL~~----------~p~illLDEPtsgLD~~~~~~i~~~l~~~~-----~~----g~tvi~~~H~~~~-~~~~~~D~v~ 1079 (1106)
++|+. +|++++|||||+|||+.++..+++.++++. +. ..+|++++|+++. ++.+.+|++.
T Consensus 169 ~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 169 KAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 99999 999999999999999999999999999884 22 3678899998762 2667777764
No 126
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.81 E-value=2.6e-21 Score=200.29 Aligned_cols=150 Identities=18% Similarity=0.143 Sum_probs=101.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcc---cccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCC
Q 001293 896 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 972 (1106)
Q Consensus 896 ~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~ 972 (1106)
+++|+||||||||||+++|+|... |.++|++.... ..++.+||++|+. ++.+++ +. .+. .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~~--~ 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-FS-SKF--F 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-EE-ETT--C
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-HH-hhc--C
Confidence 689999999999999999999642 22333322111 2346789999975 222222 10 000 0
Q ss_pred CCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHH-----HhcCCCeEEEeC--CCCCCCHHHHHH
Q 001293 973 EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVE-----LVANPSIIFMDE--PTSGLDARAAAI 1045 (1106)
Q Consensus 973 ~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~a-----L~~~p~illLDE--PtsgLD~~~~~~ 1045 (1106)
. -.+..+.. +..||||||||++||++ |+.+|++|+||| ||++||+...+.
T Consensus 65 --~----------------~~~~~~~~-----~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 65 --T----------------SKKLVGSY-----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp --C----------------CSSEETTE-----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred --C----------------cccccccc-----ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 0 00122222 24699999999999996 999999999999 999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEec---CccHHHHHhcCeEEEEecCCEEEEecCCC
Q 001293 1046 VMRTVRNTVDTGRTVVCTIH---QPSIDIFEAFDELFLMKRGGQEIYVGPLG 1094 (1106)
Q Consensus 1046 i~~~l~~~~~~g~tvi~~~H---~~~~~~~~~~D~v~~l~~Gg~~~~~g~~g 1094 (1106)
+.+.+++ .+.|+|+++| +.. .+...+|+ .+|+++...+..
T Consensus 122 l~~~l~~---~~~~~i~~~H~~h~~~-~~~~i~~r-----~~~~i~~~~~~~ 164 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPIRDVHP-LVKEIRRL-----PGAVLIELTPEN 164 (178)
T ss_dssp HHHHHTC---TTSEEEEECCSSCCSH-HHHHHHTC-----TTCEEEECCTTT
T ss_pred HHHHHhc---CCCeEEEEEccCCCch-HHHHHHhc-----CCcEEEEecCcC
Confidence 9998875 4677888885 654 46667786 456776655443
No 127
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.81 E-value=1.1e-23 Score=223.88 Aligned_cols=184 Identities=12% Similarity=0.049 Sum_probs=116.9
Q ss_pred eEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcccccceEEEEccCCCCCCCCCHHH
Q 001293 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960 (1106)
Q Consensus 881 ~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~tv~e 960 (1106)
..+++| .+|++|++++|+||||||||||+++|+|... .+.+.+.+.+.+... ..++.++|++|++..++.+|+.+
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHTT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhcC
Confidence 457888 6999999999999999999999999999653 223333333332221 22456899999877666667766
Q ss_pred HHHHHHhhcCC---CCCChHHHHHHHHHH------HHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001293 961 SLLFSAWLRLS---PEVDSETRKMFIDEV------MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1031 (1106)
Q Consensus 961 ~l~~~~~~r~~---~~~~~~~~~~~v~~~------l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~illL 1031 (1106)
++........+ ...+.+..++.+++. ++.+++.++++.. +..|| +|+.+|++++|
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~lS-----------~l~~~p~~~~L 147 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTM-----PEAVT-----------VFLAPPSWQDL 147 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHC-----TTSEE-----------EEEECSCHHHH
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhc-----CCcEE-----------EEEECCCHHHH
Confidence 65321111100 011223333444444 4455554444443 23466 88999999999
Q ss_pred eCCCCCC----CHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhcCeEEEEecCCE
Q 001293 1032 DEPTSGL----DARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1106)
Q Consensus 1032 DEPtsgL----D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1086 (1106)
||||+|+ |+..++.+++.++++.. .|.|||+++||++ ++...||++++|.+.|+
T Consensus 148 Dep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~p~~ 206 (207)
T 1znw_A 148 QARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTAPGS 206 (207)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC------
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhccCCC
Confidence 9999998 78899999999999864 5899999999997 68889999999976543
No 128
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.80 E-value=5.9e-21 Score=196.56 Aligned_cols=66 Identities=11% Similarity=0.017 Sum_probs=54.2
Q ss_pred CCChhhhHHHHHHHHHhcCCccceeecCCCCCCHH----------------HHHHHHHHHHHHHHhcCCeEEEEEecChh
Q 001293 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS----------------TTFQIVNCLRQNIHINSGTAVISLLQPAP 386 (1106)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~----------------~~~~i~~~l~~~~~~~~~t~vi~i~q~~~ 386 (1106)
..|||||||++||++++.+|++++|||||++||+. ....+.+.|+++.. .+.|+| .++|+..
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~-~g~tvi-~vtH~~~ 160 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQR-EGFRYV-YILNSPE 160 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHH-HTCSEE-EEECSHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHh-cCCcEE-EEeCCHH
Confidence 36999999999999999999999999999999999 55888888887755 355554 4677776
Q ss_pred HHHh
Q 001293 387 ETYD 390 (1106)
Q Consensus 387 ~~~~ 390 (1106)
++.+
T Consensus 161 ~~~~ 164 (171)
T 4gp7_A 161 EVEE 164 (171)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 6643
No 129
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.80 E-value=5.5e-21 Score=197.83 Aligned_cols=149 Identities=12% Similarity=0.122 Sum_probs=101.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHHHHHHHHHHhcCCCch
Q 001293 180 LTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 259 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 259 (1106)
.++|+||||||||||+++|+|.+. ..+.|... .+......++.++|++|+. |+.+++ ++ +.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--i~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~------ 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-FS-SK------ 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEE---EEEC------CCEEEEEET------TCCEEE-EE-ET------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcCCCEEh---hhhccccccceeEEEeecC------cHHHHH-HH-hh------
Confidence 589999999999999999999985 22334321 1111001246789999964 222222 00 00
Q ss_pred hhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCCChhhhHHHHHHHH--
Q 001293 260 YEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM-- 337 (1106)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~a-- 337 (1106)
+... +..+ ++.+..||||||||++||++
T Consensus 63 -----------------------------------------------~~~~--~~~~-~~~~~~lSgG~~qr~~la~aa~ 92 (178)
T 1ye8_A 63 -----------------------------------------------FFTS--KKLV-GSYGVNVQYFEELAIPILERAY 92 (178)
T ss_dssp -----------------------------------------------TCCC--SSEE-TTEEECHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------cCCc--cccc-cccccCcCHHHHHHHHHHhhcc
Confidence 0000 0112 23345699999999999996
Q ss_pred ---HhcCCccceeec--CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEe--cChhHHHhhcCeEEEEcCCeEEE
Q 001293 338 ---MVGPALALFMDE--ISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL--QPAPETYDLFDDIILLSDGQIVY 405 (1106)
Q Consensus 338 ---l~~~p~vllLDE--ptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~--q~~~~~~~~~D~iilL~~G~iv~ 405 (1106)
++.+|++++||| ||++||+.....+.+.+++ .+.++|+++| |+.+.+..++|+ .+|+++.
T Consensus 93 ~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 93 REAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred ccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 999999999999 9999999999988888864 3455777775 788888888998 5566654
No 130
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.77 E-value=6.1e-23 Score=228.70 Aligned_cols=160 Identities=11% Similarity=0.101 Sum_probs=118.3
Q ss_pred eeeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccC
Q 001293 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1106)
Q Consensus 855 ~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1106)
.|.++||++.|+ . .+|++||++|++|+++||+||||||||||+++|+|.. .|.|.
T Consensus 101 ~i~~~~vs~~y~-~-------------~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I~------ 155 (305)
T 2v9p_A 101 FFNYQNIELITF-I-------------NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSVL------ 155 (305)
T ss_dssp HHHHTTCCHHHH-H-------------HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEEE------
T ss_pred eEEEEEEEEEcC-h-------------hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceEE------
Confidence 478899988875 1 3799999999999999999999999999999999964 46663
Q ss_pred CcccccceEEEEccCCCCCCCCCHHH-HHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHH
Q 001293 935 KQETFARISGYCEQNDIHSPFVTIYE-SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1106)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~tv~e-~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqr 1013 (1106)
+|++|++.++. .|++| |+.|.. +... .+++.++.+ |.+..+ +..||||||
T Consensus 156 ---------~~v~q~~~lf~-~ti~~~ni~~~~------~~~~-----~~~~~i~~~-L~~gld-------g~~LSgGqk 206 (305)
T 2v9p_A 156 ---------SFANHKSHFWL-ASLADTRAALVD------DATH-----ACWRYFDTY-LRNALD-------GYPVSIDRK 206 (305)
T ss_dssp ---------CGGGTTSGGGG-GGGTTCSCEEEE------EECH-----HHHHHHHHT-TTGGGG-------TCCEECCCS
T ss_pred ---------EEecCcccccc-ccHHHHhhccCc------cccH-----HHHHHHHHH-hHccCC-------ccCcCHHHH
Confidence 45677665554 36665 665531 1111 245555553 333222 247999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeEEEEecCCEEEEecCC
Q 001293 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1106)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~~~g~~ 1093 (1106)
|| ||||+++|+||| ||+||+.++..|+. .+|+++ .++.+|++ +|++ |++++.|+.
T Consensus 207 QR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~~-G~iv~~g~~ 261 (305)
T 2v9p_A 207 HK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQ--TFRFEQPC-TDES-GEQPFNITD 261 (305)
T ss_dssp SC---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEE--EEECCCCC-CCC----CCCCCCH
T ss_pred HH---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHH--HHHhCCEE-EEeC-CEEEEeCCH
Confidence 99 999999999999 99999999988862 189886 45789999 9976 688887763
No 131
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.77 E-value=2.5e-20 Score=208.82 Aligned_cols=174 Identities=15% Similarity=0.137 Sum_probs=127.4
Q ss_pred eeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCc-------c--cceEEEEcCCCC-C
Q 001293 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------P--QRTAAYISQHDN-H 237 (1106)
Q Consensus 168 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~--~~~~~yv~Q~d~-~ 237 (1106)
++++|+.+++|++++|+||||||||||++.|+|.+.|+ +|+|.++|.+..... . ++.++|++|++. .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 45789999999999999999999999999999999887 899999998865421 1 236899999987 8
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 001293 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1106)
++.+||+|++.++... +. + ..+++.+|+.+..+..+
T Consensus 167 ~~~~~v~e~l~~~~~~-~~----d--------------------------------------~~lldt~gl~~~~~~~~- 202 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEE-GY----D--------------------------------------VVLCDTSGRLHTNYSLM- 202 (302)
T ss_dssp CHHHHHHHHHHHHHHT-TC----S--------------------------------------EEEECCCCCSSCCHHHH-
T ss_pred CHHHHHHHHHHHHHHc-CC----c--------------------------------------chHHhcCCCCcchhHHH-
Confidence 8899999999886421 10 0 00133456665554444
Q ss_pred cccccCCChhhhHHHHHHHHHhcCCc--cceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC---------hh
Q 001293 318 DEMIRGISGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP---------AP 386 (1106)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~--vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~---------~~ 386 (1106)
..|| |||++||++++.+|+ +|+|| ||+|||+.... +++.+..+.++|+ ++|. ..
T Consensus 203 ----~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~------~~~~~~~g~t~ii-iThlD~~~~~g~~l~ 267 (302)
T 3b9q_A 203 ----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI-LTKLDGSARGGCVVS 267 (302)
T ss_dssp ----HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE-EECCSSCSCTHHHHH
T ss_pred ----HHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH------HHHHHhcCCCEEE-EeCCCCCCccChhee
Confidence 3599 999999999999999 99999 99999997542 3333223556555 4452 22
Q ss_pred HHHhhcCeEEEEcCCeE
Q 001293 387 ETYDLFDDIILLSDGQI 403 (1106)
Q Consensus 387 ~~~~~~D~iilL~~G~i 403 (1106)
-+....+.|..+..|+.
T Consensus 268 ~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 268 VVEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHHCCCEEEEECSSS
T ss_pred hHHHHCCCEEEEeCCCC
Confidence 33456678888888864
No 132
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.76 E-value=2.3e-20 Score=209.15 Aligned_cols=173 Identities=15% Similarity=0.111 Sum_probs=127.4
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcc-------cc--cceEEEEccCCC-CC
Q 001293 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TF--ARISGYCEQNDI-HS 953 (1106)
Q Consensus 884 L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~q~~~-~~ 953 (1106)
++.+|+.+++|++++|+||||||||||++.|+|... +..|+|.++|.+..+. .+ ++.++|++|++. ..
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 457889999999999999999999999999999654 3468999999886432 12 236899999988 78
Q ss_pred CCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--eEEE
Q 001293 954 PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFM 1031 (1106)
Q Consensus 954 ~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~--illL 1031 (1106)
+..|++|++.+... +. .+ ..+++.+++.+..+... .+|| |||++|||+|+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~-~~---~d--------~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKE-EG---YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHH-TT---CS--------EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHH-cC---Cc--------chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEEE
Confidence 88899999987532 11 10 12455667666555443 3588 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCcc-------HH-HHHhcCeEEEEecCC
Q 001293 1032 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPS-------ID-IFEAFDELFLMKRGG 1085 (1106)
Q Consensus 1032 DEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~-------~~-~~~~~D~v~~l~~Gg 1085 (1106)
| ||+|||+..+. +++. ..|.|+|++||... .. ..+..+.|..+..|-
T Consensus 228 D-ptsglD~~~~~------~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge 283 (302)
T 3b9q_A 228 D-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGE 283 (302)
T ss_dssp E-GGGGGGGHHHH------HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred e-CCCCcCHHHHH------HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCC
Confidence 9 99999998652 3333 35899999999321 11 234456778887653
No 133
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.76 E-value=3.3e-20 Score=204.79 Aligned_cols=145 Identities=12% Similarity=0.179 Sum_probs=88.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHHHHHHHHHHhcCCCch
Q 001293 180 LTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 259 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 259 (1106)
.++|+||||||||||+|+|+|...|+ +|+|.++|.++.....++.++|++|++.+++.+||.||+.|+........
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~- 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC- 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHH-
Confidence 47999999999999999999999998 99999999887655455789999999999999999999998754321100
Q ss_pred hhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCCChhhhHHHHHHHHHh
Q 001293 260 YEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339 (1106)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~ 339 (1106)
.+.+. ..+. ....+.. ...||||||||+++||+++
T Consensus 80 ~~~i~------------------------------------~~~~----~~~~~~~-----~~~LS~G~~qrv~iaRal~ 114 (270)
T 3sop_A 80 WEPIE------------------------------------KYIN----EQYEKFL-----KEEVNIARKKRIPDTRVHC 114 (270)
T ss_dssp SHHHH------------------------------------HHHH----HHHHHHH-----HHHSCTTCCSSCCCCSCCE
T ss_pred HHHHH------------------------------------HHHH----HHHHhhh-----HHhcCcccchhhhhheeee
Confidence 00000 0000 1111222 2359999999999999987
Q ss_pred cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEe
Q 001293 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL 382 (1106)
Q Consensus 340 ~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~ 382 (1106)
. ++|||||+.|||+.. .++ ++.+.. . .++|++++
T Consensus 115 ~---lllldep~~gL~~lD-~~~---l~~L~~-~-~~vI~Vi~ 148 (270)
T 3sop_A 115 C---LYFISPTGHSLRPLD-LEF---MKHLSK-V-VNIIPVIA 148 (270)
T ss_dssp E---EEEECCCSSSCCHHH-HHH---HHHHHT-T-SEEEEEET
T ss_pred e---eEEEecCCCcCCHHH-HHH---HHHHHh-c-CcEEEEEe
Confidence 5 999999999999987 333 444332 2 56665544
No 134
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.75 E-value=4.6e-18 Score=194.28 Aligned_cols=86 Identities=14% Similarity=0.117 Sum_probs=74.8
Q ss_pred ccccc-CCChhhhHHHHHHHHHh---------cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhH
Q 001293 318 DEMIR-GISGGQKKRVTTGEMMV---------GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 387 (1106)
Q Consensus 318 ~~~~~-~LSGGqrqRvsia~al~---------~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~ 387 (1106)
+..++ .+|||||||++||++|+ ++|+||||||||++||+..+..+++.|+++ . .++|+++|. .+
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~----~-qt~i~~th~-~~ 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV----P-QAIVTGTEL-AP 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS----S-EEEEEESSC-CT
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc----C-cEEEEEEec-cc
Confidence 44566 79999999999999999 899999999999999999999999999763 2 566667774 33
Q ss_pred HHhhcCeEEEEcCCeEEEEcChHHH
Q 001293 388 TYDLFDDIILLSDGQIVYQGPRELV 412 (1106)
Q Consensus 388 ~~~~~D~iilL~~G~iv~~G~~~~~ 412 (1106)
.+|++++|++|+++..|+++++
T Consensus 333 ---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 ---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp ---TCSEEEEEETTEEEECCCTTTS
T ss_pred ---cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998765
No 135
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.74 E-value=1.5e-20 Score=207.49 Aligned_cols=148 Identities=14% Similarity=0.124 Sum_probs=96.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCC
Q 001293 896 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD 975 (1106)
Q Consensus 896 ~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~ 975 (1106)
.+||+||||||||||+++|+|... +..|+|.++|.+......++.++|++|++.+.+.+||.|++.|+..... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--ENC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HHH
Confidence 589999999999999999999765 4689999999887655566789999999998899999999988754321 111
Q ss_pred hHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001293 976 SETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055 (1106)
Q Consensus 976 ~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~ 1055 (1106)
.+ .+.+.++ ..+.+... ..||||||||++|||+++. ++||||||.|||+.. .+.++.+.+
T Consensus 80 ~~----~i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 WE----PIEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp SH----HHHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred HH----HHHHHHH----HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 11 1223322 23333332 3699999999999999875 999999999999987 344455544
Q ss_pred CCCeEEEEecCcc
Q 001293 1056 TGRTVVCTIHQPS 1068 (1106)
Q Consensus 1056 ~g~tvi~~~H~~~ 1068 (1106)
. .+||+++|..+
T Consensus 140 ~-~~vI~Vi~K~D 151 (270)
T 3sop_A 140 V-VNIIPVIAKAD 151 (270)
T ss_dssp T-SEEEEEETTGG
T ss_pred c-CcEEEEEeccc
Confidence 5 89999998653
No 136
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.74 E-value=2.3e-17 Score=188.67 Aligned_cols=76 Identities=22% Similarity=0.328 Sum_probs=68.9
Q ss_pred CCCCCHHHHH------HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeE
Q 001293 1005 VSGLSTEQRK------RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1078 (1106)
Q Consensus 1005 ~~~LSgGqrq------rl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v 1078 (1106)
+..||||||| |+++|++|+.+|++|||||||+|||+.++..+++.|+++...|.|||++||++. +.+.||++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~--~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH--HHHhCCEE
Confidence 3579999999 677888888999999999999999999999999999998777899999999964 67899999
Q ss_pred EEEe
Q 001293 1079 FLMK 1082 (1106)
Q Consensus 1079 ~~l~ 1082 (1106)
++|+
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
No 137
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.74 E-value=4e-22 Score=213.65 Aligned_cols=177 Identities=10% Similarity=-0.027 Sum_probs=113.7
Q ss_pred EEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcc----cccceEEEEccCCCCCCCCC
Q 001293 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFARISGYCEQNDIHSPFVT 957 (1106)
Q Consensus 882 ~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~~~~~~~t 957 (1106)
.-|+||||+|++|++++|+||||||||||+++|+|.. + |.|.+ |.+.... ..++.++|++|++..++.++
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 3699999999999999999999999999999999965 2 67777 6653221 23456889999765433221
Q ss_pred H-HHHHHHHHhhcCCC-CCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHH-----HHHHhcCCCeEE
Q 001293 958 I-YESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTI-----AVELVANPSIIF 1030 (1106)
Q Consensus 958 v-~e~l~~~~~~r~~~-~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~i-----A~aL~~~p~ill 1030 (1106)
. .+++.+ ...+.+. ..+ +..++++++...+. +.+ ..||||||||++| |++++.+|++++
T Consensus 85 ~~~~~l~~-~~~~~~~~g~~----~~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~ 150 (218)
T 1z6g_A 85 KNEDFLEY-DNYANNFYGTL----KSEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTDV 150 (218)
T ss_dssp HTTCEEEE-EEETTEEEEEE----HHHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHHH
T ss_pred hccchhhh-hhcccccCCCc----HHHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHH
Confidence 0 011100 0001100 011 12356666654432 112 2589999999999 899999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-------CCCeEEEEecCccHHHHHhcCeEE
Q 001293 1031 MDEPTSGLDARAAAIVMRTVRNTVD-------TGRTVVCTIHQPSIDIFEAFDELF 1079 (1106)
Q Consensus 1031 LDEPtsgLD~~~~~~i~~~l~~~~~-------~g~tvi~~~H~~~~~~~~~~D~v~ 1079 (1106)
|||||+++|..+...|.+.+.+... .+.+.|++.|+++ +....+|+++
T Consensus 151 Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~-ea~~~~~~ii 205 (218)
T 1z6g_A 151 LLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLT-LTYQQLKNYL 205 (218)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHH-HHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHH-HHHHHHHHHH
Confidence 9999999999999999888876532 4678888999876 5666667665
No 138
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.74 E-value=1.3e-21 Score=209.61 Aligned_cols=152 Identities=14% Similarity=0.098 Sum_probs=95.5
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcc----cceEEEEcCCCCCCCC
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 240 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1106)
..-|+|||+.+++|++++|+||||||||||+++|+|++ | |+|.+ |.++....+ ++.++|++|++..++.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 34799999999999999999999999999999999987 4 78888 776543222 3568899997654433
Q ss_pred CCH-HHHHHH---HHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccc
Q 001293 241 MTV-RETLAF---SARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (1106)
Q Consensus 241 lTV-~E~l~f---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1106)
++. .+++.+ ...+.+ .. ...++.+++...+ ..+
T Consensus 83 ~~~~~~~l~~~~~~~~~~g--~~------------------------------------~~~i~~~l~~~~~-----~il 119 (218)
T 1z6g_A 83 KLKNEDFLEYDNYANNFYG--TL------------------------------------KSEYDKAKEQNKI-----CLF 119 (218)
T ss_dssp HHHTTCEEEEEEETTEEEE--EE------------------------------------HHHHHHHHHTTCE-----EEE
T ss_pred hhhccchhhhhhcccccCC--Cc------------------------------------HHHHHHHHhCCCc-----EEE
Confidence 220 111110 000000 00 0112333332221 122
Q ss_pred ccccccCCChhhhHHHHH-----HHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHH
Q 001293 317 GDEMIRGISGGQKKRVTT-----GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 370 (1106)
Q Consensus 317 g~~~~~~LSGGqrqRvsi-----a~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~ 370 (1106)
. ..+|||||||+++ +++++.+|++++|||||+++|..+...|.+.|.+..
T Consensus 120 ~----~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~ 174 (218)
T 1z6g_A 120 E----MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLN 174 (218)
T ss_dssp E----ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred E----ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 1 3599999999999 899999999999999999999999999998887654
No 139
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.73 E-value=1.8e-19 Score=204.62 Aligned_cols=131 Identities=18% Similarity=0.120 Sum_probs=103.5
Q ss_pred EeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcc-cccceEEEEccCCCCCCCCCHHHH
Q 001293 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-TFARISGYCEQNDIHSPFVTIYES 961 (1106)
Q Consensus 883 ~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~q~~~~~~~~tv~e~ 961 (1106)
+++++|+.+++|++++|+||||||||||+++|+|... +..|.|.++|.+.... ..++.++|++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~--~~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP--KEERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC--TTSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCcEEEECCeeccccccchhEEEEEe--------------
Confidence 6899999999999999999999999999999999765 3579999998642110 0112222221
Q ss_pred HHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 001293 962 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041 (1106)
Q Consensus 962 l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~ 1041 (1106)
+ |||+||++||+||..+|++|+|||||+.
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~~---- 252 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRSS---- 252 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCST----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCChH----
Confidence 1 7899999999999999999999999982
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeEEEEecCC
Q 001293 1042 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1106)
Q Consensus 1042 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg 1085 (1106)
.+++.++.+...+.|+|+|+|+++ ..+.+||+++|.+|.
T Consensus 253 ---e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 253 ---EAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSN 291 (330)
T ss_dssp ---HHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTS
T ss_pred ---HHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCC
Confidence 356677766533358999999987 677899999998874
No 140
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.73 E-value=1.4e-19 Score=206.41 Aligned_cols=170 Identities=16% Similarity=0.119 Sum_probs=127.2
Q ss_pred eeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcc-------cc--cceEEEEccCCC-CCC
Q 001293 885 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TF--ARISGYCEQNDI-HSP 954 (1106)
Q Consensus 885 ~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~q~~~-~~~ 954 (1106)
..+|+.+++|++++|+||||||||||++.|+|... +..|+|.++|.+..+. .+ ++.++|++|++. ..+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc--ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 46788899999999999999999999999999654 3468999999886431 12 346899999987 788
Q ss_pred CCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--eEEEe
Q 001293 955 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMD 1032 (1106)
Q Consensus 955 ~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~--illLD 1032 (1106)
..|++|++.+... +. .+ ..+++.+++.+..+... .+|| |||++|||+|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~-~~---~d--------~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKE-EG---YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHH-TT---CS--------EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHh-CC---CH--------HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 8899999987642 11 11 12455667666555543 3588 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecC---------ccHHHHHhcCeEEEEecC
Q 001293 1033 EPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ---------PSIDIFEAFDELFLMKRG 1084 (1106)
Q Consensus 1033 EPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~---------~~~~~~~~~D~v~~l~~G 1084 (1106)
||+|||+.++. +++. ..|.|+|++||. .+. .....+.|..+..|
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi-~~~~~~pI~~ig~G 339 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSV-VEELGIPVKFIGVG 339 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHH-HHHHCCCEEEEECS
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHH-HHHhCCCEEEEeCC
Confidence 99999998653 2333 348999999993 221 23345677777665
No 141
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.73 E-value=2.6e-19 Score=204.16 Aligned_cols=173 Identities=15% Similarity=0.150 Sum_probs=127.8
Q ss_pred eceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCc---------ccceEEEEcCCCC-CC
Q 001293 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---------PQRTAAYISQHDN-HI 238 (1106)
Q Consensus 169 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---------~~~~~~yv~Q~d~-~~ 238 (1106)
+.+|+.+++|++++|+||||||||||++.|+|++.++ +|+|.++|.++.... .++.++|++|++. .+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4688999999999999999999999999999999887 899999998864421 1246899999987 88
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccc
Q 001293 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1106)
+.+||+|++.++... +. + ..+++.+|+.+..+..+
T Consensus 225 p~~tv~e~l~~~~~~-~~----d--------------------------------------~~lldt~Gl~~~~~~~~-- 259 (359)
T 2og2_A 225 AATVLSKAVKRGKEE-GY----D--------------------------------------VVLCDTSGRLHTNYSLM-- 259 (359)
T ss_dssp HHHHHHHHHHHHHHT-TC----S--------------------------------------EEEEECCCCSSCCHHHH--
T ss_pred hhhhHHHHHHHHHhC-CC----H--------------------------------------HHHHHhcCCChhhhhHH--
Confidence 899999999886421 10 0 00123456655544433
Q ss_pred ccccCCChhhhHHHHHHHHHhcCCc--cceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC---------hhH
Q 001293 319 EMIRGISGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP---------APE 387 (1106)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~--vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~---------~~~ 387 (1106)
..|| |||++||++++.+|+ +|+|| ||+|||+.... +.+....+.|+|+ ++|. ..-
T Consensus 260 ---~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~ii-iThlD~~~~gG~~lsi 325 (359)
T 2og2_A 260 ---EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI-LTKLDGSARGGCVVSV 325 (359)
T ss_dssp ---HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE-EESCTTCSCTHHHHHH
T ss_pred ---HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEE-EecCcccccccHHHHH
Confidence 4589 999999999999999 99999 99999998653 2332223556555 4552 223
Q ss_pred HHhhcCeEEEEcCCeE
Q 001293 388 TYDLFDDIILLSDGQI 403 (1106)
Q Consensus 388 ~~~~~D~iilL~~G~i 403 (1106)
.....+.|..+..|+.
T Consensus 326 ~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 326 VEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHhCCCEEEEeCCCC
Confidence 3456678888888863
No 142
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.73 E-value=5.7e-21 Score=203.01 Aligned_cols=180 Identities=12% Similarity=0.098 Sum_probs=110.6
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHH
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
.++++| ..+++|++++|+||||||||||+++|+|+++. +.+.+.+.+.+... ..++.++|++|++..++.+|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 457888 69999999999999999999999999999853 23333333322211 1235689999987777777887
Q ss_pred HHHHHHHHhcC----CCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHH------HHHcCCcccccc
Q 001293 245 ETLAFSARCQG----VGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYY------LKVLGLDVCADT 314 (1106)
Q Consensus 245 E~l~f~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~------l~~lgL~~~~dt 314 (1106)
+++.+.....+ .+...+ +.. ..++.. ++.+|+...++.
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~---~~~-----------------------------~~~~~~~~~~~~l~~~gl~~~~~~ 130 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQ---PVR-----------------------------AAAATGVPVLIEVDLAGARAIKKT 130 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHH---HHH-----------------------------HHHHHTCCEEEECCHHHHHHHHHH
T ss_pred CCceeehhhcCchhhcCCcHH---HHH-----------------------------HHHHcCCeEEEEeCHHHHHHHHHh
Confidence 77643211100 000000 000 011111 223333333332
Q ss_pred ccccccccCCChhhhHHHHHHHHHhcCCccceeecCCCCC----CHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHh
Q 001293 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGL----DSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390 (1106)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgL----D~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~ 390 (1106)
. ++.|| +|+.+|++++|||||+|+ |+..+..+.+.++++.+..+.|+ +.++|+..++..
T Consensus 131 ~-----~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tv-i~vtHdl~~~~~ 193 (207)
T 1znw_A 131 M-----PEAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDK-VVVNRRLESACA 193 (207)
T ss_dssp C-----TTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSE-EEECSSHHHHHH
T ss_pred c-----CCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcE-EEECCCHHHHHH
Confidence 2 23466 899999999999999998 77899999999998765444454 557899999999
Q ss_pred hcCeEEEEc
Q 001293 391 LFDDIILLS 399 (1106)
Q Consensus 391 ~~D~iilL~ 399 (1106)
+||+|++|.
T Consensus 194 ~~d~i~~l~ 202 (207)
T 1znw_A 194 ELVSLLVGT 202 (207)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhc
Confidence 999999984
No 143
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.73 E-value=6.9e-20 Score=215.21 Aligned_cols=179 Identities=15% Similarity=0.126 Sum_probs=138.6
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCc---cCCCC--------cccceEEEEcC
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH---DMDEF--------VPQRTAAYISQ 233 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~---~~~~~--------~~~~~~~yv~Q 233 (1106)
..+|+++ +.+.+|++++|+|||||||||||++|+|..+++ +|.|.++|. ++.++ ..++.++||+|
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q 220 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFIENILGPDGRARSVVIAAP 220 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEEC
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHHHhhccccccCceEEEEEC
Confidence 4599999 999999999999999999999999999999998 999999998 44332 13478999999
Q ss_pred C-CCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccc
Q 001293 234 H-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (1106)
Q Consensus 234 ~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (1106)
+ +..++.+||.+|+.+.++.... +. .+ .....
T Consensus 221 ~~~~~~~~~~v~~~~~~~ae~~~~--------------~~------~~---------------------------v~~~l 253 (438)
T 2dpy_A 221 ADVSPLLRMQGAAYATRIAEDFRD--------------RG------QH---------------------------VLLIM 253 (438)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHT--------------TT------CE---------------------------EEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHh--------------CC------CC---------------------------HHHHH
Confidence 5 5667788999999886543110 00 00 00001
Q ss_pred ccccccccccCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHh--cCCe-----EEEEEecCh
Q 001293 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI--NSGT-----AVISLLQPA 385 (1106)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~--~~~t-----~vi~i~q~~ 385 (1106)
| .+..+|||| |||+|| +++|++ |+|||+.+...+.+.++++.+. .+++ +|+.++|+.
T Consensus 254 d------~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl 317 (438)
T 2dpy_A 254 D------SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQ 317 (438)
T ss_dssp E------CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCS
T ss_pred H------hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCc
Confidence 1 123599999 999999 888887 9999999999999999876431 1242 566667776
Q ss_pred hHHHhhcCeEEEEcCCeEEEEcChHHH
Q 001293 386 PETYDLFDDIILLSDGQIVYQGPRELV 412 (1106)
Q Consensus 386 ~~~~~~~D~iilL~~G~iv~~G~~~~~ 412 (1106)
. ...+|++++|.+|+++..|++.++
T Consensus 318 ~--~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 318 Q--DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp C--CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred c--chhhceEEEEeCcEEEEeCCHHHc
Confidence 6 678999999999999999988765
No 144
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.71 E-value=1.3e-19 Score=212.75 Aligned_cols=190 Identities=16% Similarity=0.080 Sum_probs=143.8
Q ss_pred ceeeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCc-
Q 001293 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY- 932 (1106)
Q Consensus 854 ~~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~- 932 (1106)
..+.++++++.++. +..+|+++ +.+.+|++++|+|+||||||||+++|+|... +..|.|.++|.
T Consensus 130 ~~l~~~~v~~~~~t------------g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~--~~~G~i~~~G~r 194 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT------------GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR--ADVIVVGLIGER 194 (438)
T ss_dssp CTTTSCCCCSBCCC------------SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCC
T ss_pred CceEEeccceecCC------------CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC--CCeEEEEEecee
Confidence 34667777666532 23589999 9999999999999999999999999999765 45899999997
Q ss_pred --cCCc--------ccccceEEEEccC-CCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccC
Q 001293 933 --PKKQ--------ETFARISGYCEQN-DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 1001 (1106)
Q Consensus 933 --~~~~--------~~~~~~~gyv~q~-~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g 1001 (1106)
+... ..+++.++|++|+ +...+.+|+.+++.+.+....... -....+.+.
T Consensus 195 ~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~----------------~~v~~~ld~--- 255 (438)
T 2dpy_A 195 GREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRG----------------QHVLLIMDS--- 255 (438)
T ss_dssp HHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT----------------CEEEEEEEC---
T ss_pred cHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCC----------------CCHHHHHHh---
Confidence 3321 2356789999995 444567789999887653211000 000111222
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----eEEEEecCccHHHH
Q 001293 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---T-GR-----TVVCTIHQPSIDIF 1072 (1106)
Q Consensus 1002 ~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~---~-g~-----tvi~~~H~~~~~~~ 1072 (1106)
...||+|| ||++|| +.+|++ |+|||+.....+.+.++++.+ + |+ ||++++||++ .
T Consensus 256 ---l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~ 319 (438)
T 2dpy_A 256 ---LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---D 319 (438)
T ss_dssp ---HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---C
T ss_pred ---HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---c
Confidence 24699999 999999 888988 999999999999999998865 3 64 9999999987 4
Q ss_pred HhcCeEEEEecCCEEEEecCCC
Q 001293 1073 EAFDELFLMKRGGQEIYVGPLG 1094 (1106)
Q Consensus 1073 ~~~D~v~~l~~Gg~~~~~g~~g 1094 (1106)
..+|++++|.+ |+++..|++.
T Consensus 320 ~iad~v~~l~d-G~Ivl~~~~~ 340 (438)
T 2dpy_A 320 PIADSARAILD-GHIVLSRRLA 340 (438)
T ss_dssp HHHHHHHHHSS-EEEEECHHHH
T ss_pred hhhceEEEEeC-cEEEEeCCHH
Confidence 57899999986 6999988754
No 145
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.70 E-value=2.4e-18 Score=195.40 Aligned_cols=133 Identities=13% Similarity=0.175 Sum_probs=100.1
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHHHH
Q 001293 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRET 246 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (1106)
+++++|+.+++|++++|+|||||||||||++|+|+++|+ +|.|+++|.+ +... ++ +
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~--e~~~-------~~---~--------- 215 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTE--EIVF-------KH---H--------- 215 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSC--CCCC-------SS---C---------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCee--cccc-------cc---c---------
Confidence 789999999999999999999999999999999999998 9999999864 1100 00 0
Q ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCCCh
Q 001293 247 LAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISG 326 (1106)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (1106)
+ . ..+ .+ .+ |
T Consensus 216 -------~---~----------------------------------------------~i~-------~~-----~g--g 225 (330)
T 2pt7_A 216 -------K---N----------------------------------------------YTQ-------LF-----FG--G 225 (330)
T ss_dssp -------S---S----------------------------------------------EEE-------EE-----CB--T
T ss_pred -------h---h----------------------------------------------EEE-------EE-----eC--C
Confidence 0 0 000 00 01 8
Q ss_pred hhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001293 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1106)
Q Consensus 327 GqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~i 403 (1106)
||+||++||++|..+|++++|||||+. ++.+.|+.+. ..+.|+++++| ... +.+.+|++++|.+|+.
T Consensus 226 g~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~-~g~~tvi~t~H-~~~-~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 226 NITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLC-SGHKGTLTTLH-AGS-SEEAFIRLANMSSSNS 292 (330)
T ss_dssp TBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHH-TTCCCEEEEEE-CSS-HHHHHHHHHHHHHTSG
T ss_pred ChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHh-cCCCEEEEEEc-ccH-HHHHhhhheehhcCCc
Confidence 999999999999999999999999982 3456666543 23335555554 433 8889999999988853
No 146
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.69 E-value=2.9e-17 Score=187.63 Aligned_cols=79 Identities=11% Similarity=0.144 Sum_probs=71.1
Q ss_pred CCCHHHHHHHHHHHHHh---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCe
Q 001293 1007 GLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1077 (1106)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~---------~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~ 1077 (1106)
.||+|||||++||++|+ .+|+||||||||++||+..+..+++.++++. .|+|++||. + + .+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~---~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P---GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---cCCE
Confidence 69999999999999999 8999999999999999999999999998763 799999994 4 2 7899
Q ss_pred EEEEecCCEEEEecCCC
Q 001293 1078 LFLMKRGGQEIYVGPLG 1094 (1106)
Q Consensus 1078 v~~l~~Gg~~~~~g~~g 1094 (1106)
+++|++ |+++..|+..
T Consensus 337 i~~l~~-G~i~~~g~~~ 352 (359)
T 2o5v_A 337 TLRAQA-GRFTPVADEE 352 (359)
T ss_dssp EEEEET-TEEEECCCTT
T ss_pred EEEEEC-CEEEecCCHH
Confidence 999986 6898888864
No 147
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.69 E-value=5.8e-18 Score=189.96 Aligned_cols=183 Identities=16% Similarity=0.148 Sum_probs=113.9
Q ss_pred EEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeee-EEEEcCccCCcccccceEEEEccCCCCCCCCCHHH
Q 001293 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960 (1106)
Q Consensus 882 ~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G-~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~tv~e 960 (1106)
.+|+++++.+++|++++|+|+||||||||++.|+|... +..| .|.+.+.......+.+.+.++.+... +++.+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~--~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG--TAMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH--HTSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH--HHcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhcc
Confidence 36899999999999999999999999999999998543 1224 45443333222222222222333221 12223
Q ss_pred HHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHH-HHHHHHHHHHhcCCCeEEEeCCCC---
Q 001293 961 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ-RKRLTIAVELVANPSIIFMDEPTS--- 1036 (1106)
Q Consensus 961 ~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGq-rqrl~iA~aL~~~p~illLDEPts--- 1036 (1106)
++..+. + ..++..+.++++++...+. +.+. +..+|.+| +||+. |+++..+|++||+||||+
T Consensus 97 ~l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~~------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~ 161 (296)
T 1cr0_A 97 SLKREI-I------ENGKFDQWFDELFGNDTFH-LYDS------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVS 161 (296)
T ss_dssp HHHHHH-H------HHTHHHHHHHHHHSSSCEE-EECC------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC----
T ss_pred ccccCC-C------CHHHHHHHHHHHhccCCEE-EECC------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCC
Confidence 333221 1 1112222333333322221 1111 13589998 66666 999999999999999999
Q ss_pred C---CCH-HHHHHHHHHHHHHHhC-CCeEEEEecCc--cH-------------------HHHHhcCeEEEEecCC
Q 001293 1037 G---LDA-RAAAIVMRTVRNTVDT-GRTVVCTIHQP--SI-------------------DIFEAFDELFLMKRGG 1085 (1106)
Q Consensus 1037 g---LD~-~~~~~i~~~l~~~~~~-g~tvi~~~H~~--~~-------------------~~~~~~D~v~~l~~Gg 1085 (1106)
+ +|. .....+++.|++++++ |+|||+++|+. +. .+...||++++|++|.
T Consensus 162 ~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~ 236 (296)
T 1cr0_A 162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQ 236 (296)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC-
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCc
Confidence 5 555 6678899999998754 99999999995 20 3667899999999864
No 148
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.68 E-value=3.9e-19 Score=200.09 Aligned_cols=128 Identities=9% Similarity=-0.013 Sum_probs=95.8
Q ss_pred ceeE-EEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHHHHHH
Q 001293 170 DVSG-VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLA 248 (1106)
Q Consensus 170 ~vs~-~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1106)
|+|. .+++|++++|+||||||||||+++|+|.++|. .|. +.++||+|++.+++. |++||+.
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~--------------~~v~~v~qd~~~~~~-t~~e~~~ 142 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH--------------PRVDLVTTDGFLYPN-AELQRRN 142 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC--------------CCEEEEEGGGGBCCH-HHHHHTT
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC--------------CeEEEEecCccCCcc-cHHHHHH
Confidence 4554 37899999999999999999999999999875 332 358999999888888 9999986
Q ss_pred HHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCCChhh
Q 001293 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (1106)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1106)
+... .+.... .+ ...+...|+.++ ....+..+ ..+||||
T Consensus 143 ~~~~-~g~~~~-------------------~d---------------~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~ 181 (312)
T 3aez_A 143 LMHR-KGFPES-------------------YN---------------RRALMRFVTSVK-SGSDYACA-----PVYSHLH 181 (312)
T ss_dssp CTTC-TTSGGG-------------------BC---------------HHHHHHHHHHHH-TTCSCEEE-----EEEETTT
T ss_pred HHHh-cCCChH-------------------HH---------------HHHHHHHHHHhC-CCcccCCc-----ccCChhh
Confidence 4211 111000 00 112344566666 33333333 4699999
Q ss_pred hHHHHHHHHHhcCCccceeecCCCCCCH
Q 001293 329 KKRVTTGEMMVGPALALFMDEISTGLDS 356 (1106)
Q Consensus 329 rqRvsia~al~~~p~vllLDEptsgLD~ 356 (1106)
+||+++|++++.+|+|||||||+..+|+
T Consensus 182 ~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 182 YDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhhhhhHHHhccCCCEEEECCccccCCc
Confidence 9999999999999999999999999986
No 149
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.67 E-value=1.5e-16 Score=192.27 Aligned_cols=78 Identities=17% Similarity=0.221 Sum_probs=66.5
Q ss_pred cccCC-ChhhhHHHHHHHHHhcCC--ccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEE
Q 001293 320 MIRGI-SGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1106)
Q Consensus 320 ~~~~L-SGGqrqRvsia~al~~~p--~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ii 396 (1106)
.+..| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|++++. +.+ ||.++|+. ++...||+++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~-vi~itH~~-~~~~~~d~~~ 468 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQ-VLVVTHLA-QIAARAHHHY 468 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSE-EEEECCCH-HHHHHSSEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCE-EEEEecCH-HHHHhCCEEE
Confidence 35567 999999999999999999 99999999999999999999999999864 344 55567774 4667899999
Q ss_pred EEcCC
Q 001293 397 LLSDG 401 (1106)
Q Consensus 397 lL~~G 401 (1106)
+|.+|
T Consensus 469 ~~~~~ 473 (517)
T 4ad8_A 469 KVEKQ 473 (517)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99654
No 150
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.67 E-value=6.8e-16 Score=176.44 Aligned_cols=81 Identities=20% Similarity=0.324 Sum_probs=67.0
Q ss_pred ccccCCChhhhH------HHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhc
Q 001293 319 EMIRGISGGQKK------RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (1106)
Q Consensus 319 ~~~~~LSGGqrq------Rvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~ 392 (1106)
..+..||||||| |+++|++++.+|++|||||||+|||+..+..+++.|+++.. .+.+++ .++|+ .++.+.|
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~vi-~~sH~-~~~~~~~ 320 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVI-LVSHD-EELKDAA 320 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GSSEEE-EEESC-GGGGGGC
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEE-EEECh-HHHHHhC
Confidence 346679999999 67788889999999999999999999999999999998754 344544 46666 5788999
Q ss_pred CeEEEEc--CCe
Q 001293 393 DDIILLS--DGQ 402 (1106)
Q Consensus 393 D~iilL~--~G~ 402 (1106)
|+|++|. +|.
T Consensus 321 d~~~~l~~~~g~ 332 (339)
T 3qkt_A 321 DHVIRISLENGS 332 (339)
T ss_dssp SEEEEEEEETTE
T ss_pred CEEEEEEecCCc
Confidence 9999985 454
No 151
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.66 E-value=1.6e-17 Score=186.30 Aligned_cols=185 Identities=14% Similarity=0.061 Sum_probs=112.6
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCcee-EEEEcCccCCCCcccceEEEEcCCCCCCCCCCH
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSG-TVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G-~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1106)
.++|+++++.+++|++++|+||||||||||++.|+|.+.+. +| .|.|.+.+.......+.+.++.|... +++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~ 94 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQ 94 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhh
Confidence 45899999999999999999999999999999999998775 57 67654433211000111111222110 111
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccC
Q 001293 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1106)
.+++..+. . ...+....++.+++..++. +.+ ....
T Consensus 95 ~~~l~~~~--------------~------------------------~~~~~~~~~~~~l~~~~l~------i~~-~~~~ 129 (296)
T 1cr0_A 95 SDSLKREI--------------I------------------------ENGKFDQWFDELFGNDTFH------LYD-SFAE 129 (296)
T ss_dssp CHHHHHHH--------------H------------------------HHTHHHHHHHHHHSSSCEE------EEC-CCCS
T ss_pred ccccccCC--------------C------------------------CHHHHHHHHHHHhccCCEE------EEC-CCCC
Confidence 22222110 0 0001111233333322221 111 1235
Q ss_pred CChhh-hHHHHHHHHHhcCCccceeecCCC---C---CCH-HHHHHHHHHHHHHHHhcCCeEEEEEecCh--h-------
Q 001293 324 ISGGQ-KKRVTTGEMMVGPALALFMDEIST---G---LDS-STTFQIVNCLRQNIHINSGTAVISLLQPA--P------- 386 (1106)
Q Consensus 324 LSGGq-rqRvsia~al~~~p~vllLDEpts---g---LD~-~~~~~i~~~l~~~~~~~~~t~vi~i~q~~--~------- 386 (1106)
+|.+| +||+. |+++..+|+++++||||+ + +|. .....+++.|+++++..+.++|+ ++|.. .
T Consensus 130 ~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~-vsh~~r~~~~~~~~~ 207 (296)
T 1cr0_A 130 AETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVV-ICHLKNPDKGKAHEE 207 (296)
T ss_dssp CCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEE-EEECC----------
T ss_pred CCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE-EEecCcccccccccc
Confidence 88888 67776 999999999999999999 5 455 66678999999988755555555 55553 3
Q ss_pred -------------HHHhhcCeEEEEcCCeE
Q 001293 387 -------------ETYDLFDDIILLSDGQI 403 (1106)
Q Consensus 387 -------------~~~~~~D~iilL~~G~i 403 (1106)
.+.+.||+|++|.+|+.
T Consensus 208 ~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 208 GRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67889999999998874
No 152
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.66 E-value=1.7e-16 Score=158.37 Aligned_cols=76 Identities=22% Similarity=0.305 Sum_probs=69.6
Q ss_pred CCCCCHHHHHHHHHH------HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeE
Q 001293 1005 VSGLSTEQRKRLTIA------VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1078 (1106)
Q Consensus 1005 ~~~LSgGqrqrl~iA------~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v 1078 (1106)
+..||||||||++|| ++|+.+|+++||||||+|||+.++..+.+.++++.+.|+|||++||++. +.+.||++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~--~~~~~d~i 132 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADHV 132 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH--HHHhCCEE
Confidence 457999999999886 8999999999999999999999999999999998767899999999973 56889999
Q ss_pred EEEe
Q 001293 1079 FLMK 1082 (1106)
Q Consensus 1079 ~~l~ 1082 (1106)
++|+
T Consensus 133 i~l~ 136 (148)
T 1f2t_B 133 IRIS 136 (148)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9994
No 153
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.66 E-value=2.1e-19 Score=202.23 Aligned_cols=157 Identities=10% Similarity=-0.001 Sum_probs=106.9
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhcC
Q 001293 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (1106)
Q Consensus 891 v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~ 970 (1106)
+++|+++||+|+||||||||+++|+|...+ ..| . +.++|++|++.+++. |++||+.+... +
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~--~~G------~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~-~- 147 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR--WDH------H--------PRVDLVTTDGFLYPN-AELQRRNLMHR-K- 147 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT--STT------C--------CCEEEEEGGGGBCCH-HHHHHTTCTTC-T-
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc--cCC------C--------CeEEEEecCccCCcc-cHHHHHHHHHh-c-
Confidence 899999999999999999999999996432 112 1 358999999988887 99999864211 1
Q ss_pred CCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 001293 971 SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050 (1106)
Q Consensus 971 ~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l 1050 (1106)
..+.....+.+.+.++.++ .+..+.. +..||+||+||+++|++++.+|+|||||||++.+|+.. ..+
T Consensus 148 --g~~~~~d~~~~~~~L~~l~-~~~~~~~-----~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l 214 (312)
T 3aez_A 148 --GFPESYNRRALMRFVTSVK-SGSDYAC-----APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMV 214 (312)
T ss_dssp --TSGGGBCHHHHHHHHHHHH-TTCSCEE-----EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCG
T ss_pred --CCChHHHHHHHHHHHHHhC-CCcccCC-----cccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHH
Confidence 1112222344667788776 4433333 24699999999999999999999999999999998521 112
Q ss_pred HHHHhCCCeEEEEecCccHHHHHhcCeEEEEe
Q 001293 1051 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1106)
Q Consensus 1051 ~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1082 (1106)
.+.. + .+|++.|+.+.......+|.+.+.
T Consensus 215 ~~~~--D-~~I~V~a~~~~~~~R~i~R~~~~r 243 (312)
T 3aez_A 215 SDLF--D-FSLYVDARIEDIEQWYVSRFLAMR 243 (312)
T ss_dssp GGGC--S-EEEEEEECHHHHHHHHHHHHHHHT
T ss_pred HHhc--C-cEEEEECCHHHHHHHHHHHHHHHH
Confidence 2222 3 345556655433333445544443
No 154
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.63 E-value=2.7e-17 Score=210.72 Aligned_cols=152 Identities=18% Similarity=0.154 Sum_probs=112.5
Q ss_pred eEEeeeeEEEEeC-------CeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcccccceEE-EEccCCCC
Q 001293 881 LVLLNGVSGAFRP-------GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISG-YCEQNDIH 952 (1106)
Q Consensus 881 ~~~L~~is~~v~~-------G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g-yv~q~~~~ 952 (1106)
..+++||++.+++ |++++|+|||||||||||++| |... + .+ ++| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~--~----------------~a-qiG~~Vpq~~~- 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA--V----------------MA-QMGCYVPAEVC- 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH--H----------------HH-TTTCCEESSEE-
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH--H----------------Hh-heeEEeccCcC-
Confidence 4689999999987 999999999999999999999 7542 1 12 244 8998753
Q ss_pred CCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEe
Q 001293 953 SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1032 (1106)
Q Consensus 953 ~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~illLD 1032 (1106)
.+||.|++.. + +++.+.... |.+.+|+|+++ +++|++++.+|+++|||
T Consensus 828 --~l~v~d~I~~----r--------------------ig~~d~~~~-----~~stf~~em~~-~a~al~la~~~sLlLLD 875 (1022)
T 2o8b_B 828 --RLTPIDRVFT----R--------------------LGASDRIMS-----GESTFFVELSE-TASILMHATAHSLVLVD 875 (1022)
T ss_dssp --EECCCSBEEE----E--------------------CC--------------CHHHHHHHH-HHHHHHHCCTTCEEEEE
T ss_pred --CCCHHHHHHH----H--------------------cCCHHHHhh-----chhhhHHHHHH-HHHHHHhCCCCcEEEEE
Confidence 3455554420 1 111111111 13457887775 99999999999999999
Q ss_pred CCCCCCCHHH-HHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhcCeEEEEecCCEEE
Q 001293 1033 EPTSGLDARA-AAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1106)
Q Consensus 1033 EPtsgLD~~~-~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~ 1088 (1106)
|||+|+|+.. ...++..++.+.++ |+++|++||+++ .+...+|++.++. |++.
T Consensus 876 Ep~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~~--g~~~ 930 (1022)
T 2o8b_B 876 ELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVRL--GHMA 930 (1022)
T ss_dssp CTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEEE--EEEE
T ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceeec--CeEE
Confidence 9999999987 56688999998876 999999999986 3556789888874 5666
No 155
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.62 E-value=4.6e-17 Score=177.46 Aligned_cols=140 Identities=15% Similarity=0.012 Sum_probs=86.7
Q ss_pred ccceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCC
Q 001293 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1106)
..+++|+|+|+.+++|++++|+||||||||||+++|+|.+ |.+.++ ..++.++|++|++ +++.+|
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-------~~~~~i~~v~~d~-~~~~l~ 74 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-------QRQRKVVILSQDR-FYKVLT 74 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-------GGGCSEEEEEGGG-GBCCCC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-------ccCCceEEEeCCc-CccccC
Confidence 3456999999999999999999999999999999999976 222232 1346799999975 777899
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccc
Q 001293 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1106)
+.|++.+............ .+. ..+...|+.+ .+..+.. ..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~-----------------~~~---------------~~~~~~L~~l--~~~~~~~-----~~ 115 (245)
T 2jeo_A 75 AEQKAKALKGQYNFDHPDA-----------------FDN---------------DLMHRTLKNI--VEGKTVE-----VP 115 (245)
T ss_dssp HHHHHHHHTTCCCTTSGGG-----------------BCH---------------HHHHHHHHHH--HTTCCEE-----EC
T ss_pred HhHhhhhhccCCCCCCccc-----------------ccH---------------HHHHHHHHHH--HCCCCee-----cc
Confidence 9999977543221110000 000 0111223322 2333333 34
Q ss_pred CCChhhhHHHHHHHHHhcCCccceeecCCCCCCHH
Q 001293 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 357 (1106)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~ 357 (1106)
.+|+||+||+.+ ++++.+|++++||||...+|..
T Consensus 116 ~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~ 149 (245)
T 2jeo_A 116 TYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE 149 (245)
T ss_dssp CEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH
T ss_pred cccccccCccCc-eEEecCCCEEEEeCccccccHH
Confidence 699999999988 5888899999999998887763
No 156
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.62 E-value=5.6e-16 Score=196.05 Aligned_cols=148 Identities=16% Similarity=0.112 Sum_probs=104.9
Q ss_pred eEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHh--------CCCCCCeeeeEEEEcCccCCcccccceEEEEccCCCC
Q 001293 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--------GRKTGGYITGNITISGYPKKQETFARISGYCEQNDIH 952 (1106)
Q Consensus 881 ~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~--------g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~ 952 (1106)
..+++|+++.+.+|++++|+|||||||||||++++ |..- +..+. . ++.+ +.
T Consensus 649 ~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~v--pa~~~-~--------------~~~~---d~- 707 (934)
T 3thx_A 649 AFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFV--PCESA-E--------------VSIV---DC- 707 (934)
T ss_dssp CCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCB--SEEEE-E--------------EECC---SE-
T ss_pred eeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcc--ccccc-c--------------chHH---HH-
Confidence 46899999999999999999999999999999994 3211 11110 0 1100 00
Q ss_pred CCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHH--hcCCCeEE
Q 001293 953 SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL--VANPSIIF 1030 (1106)
Q Consensus 953 ~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL--~~~p~ill 1030 (1106)
++..+++.+ .. ..++|++++++..+|+++ +.+|+++|
T Consensus 708 ---------------------------------i~~~ig~~d---~l-----~~~lStf~~e~~~~a~il~~a~~~sLlL 746 (934)
T 3thx_A 708 ---------------------------------ILARVGAGD---SQ-----LKGVSTFMAEMLETASILRSATKDSLII 746 (934)
T ss_dssp ---------------------------------EEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEE
T ss_pred ---------------------------------HHHhcCchh---hH-----HHhHhhhHHHHHHHHHHHHhccCCcEEE
Confidence 000111111 11 134788888888888888 89999999
Q ss_pred EeCCCCCCCHHHHHHH-HHHHHHHHh-CCCeEEEEecCccHHHHHhcCeEEEEecCCEEEEecCC
Q 001293 1031 MDEPTSGLDARAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1106)
Q Consensus 1031 LDEPtsgLD~~~~~~i-~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~~~g~~ 1093 (1106)
|||||+|+|+.....+ +.+++.+.+ .|+|||++||+. ++.+.+|++..+++ |++.+.+..
T Consensus 747 LDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~n-g~v~~~~~~ 808 (934)
T 3thx_A 747 IDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNN-LHVTALTTE 808 (934)
T ss_dssp EESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEE-EEEEEEEET
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEe-eEEEEEecC
Confidence 9999999999887776 777777775 499999999996 46788999988886 577776654
No 157
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.62 E-value=2.8e-17 Score=179.12 Aligned_cols=162 Identities=16% Similarity=0.169 Sum_probs=100.0
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHh--CCCCCCeeeeEEEEcCccCCcc--cccceEEEEccCCCCCCCCCHHHHHHHH
Q 001293 890 AFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGGYITGNITISGYPKKQE--TFARISGYCEQNDIHSPFVTIYESLLFS 965 (1106)
Q Consensus 890 ~v~~G~~~al~G~nGaGKSTLl~~L~--g~~~~~~~~G~i~i~g~~~~~~--~~~~~~gyv~q~~~~~~~~tv~e~l~~~ 965 (1106)
.|++|++++|+||||||||||+++|+ |... ...|.+.+++...... ...+.+||.+|+....+.+++.++....
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 103 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE--YGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSV 103 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-----
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccc
Confidence 69999999999999999999999999 5412 1245666766543211 1123345555543222222222221110
Q ss_pred HhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCC-----H
Q 001293 966 AWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-----A 1040 (1106)
Q Consensus 966 ~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD-----~ 1040 (1106)
... . ..+. ... ....+.++......+..-..+|++++|||||++|| +
T Consensus 104 ~~~---------~----~~~~----------~~~-----~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~ 155 (251)
T 2ehv_A 104 VGL---------P----SEEK----------FVL-----EDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEER 155 (251)
T ss_dssp ------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGG
T ss_pred ccc---------c----cccc----------eec-----cCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHH
Confidence 000 0 0000 000 01234555555555555568999999999999998 6
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEecCccHHH---------HHhc-CeEEEEe
Q 001293 1041 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI---------FEAF-DELFLMK 1082 (1106)
Q Consensus 1041 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~---------~~~~-D~v~~l~ 1082 (1106)
..++.++++++.+.+.|+|||+++|+++ +. ...| |++++|+
T Consensus 156 ~~~~~l~~l~~~l~~~g~tii~vtH~~~-~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 156 KIREVLLKLNTILLEMGVTTILTTEAPD-PQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp GHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEECCCC-CCcccccccChhhEeeeEEEEEe
Confidence 7777799999998878999999999986 34 4678 9999996
No 158
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.61 E-value=3.3e-17 Score=178.68 Aligned_cols=156 Identities=9% Similarity=-0.003 Sum_probs=97.6
Q ss_pred CceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcccccceEEEEccCCCCCCCCCH
Q 001293 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 958 (1106)
Q Consensus 879 ~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~tv 958 (1106)
++..+|+||||++++|+++||+||||||||||+++|+|.. |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 4567999999999999999999999999999999999843 222222 2456789999985 5667899
Q ss_pred HHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001293 959 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038 (1106)
Q Consensus 959 ~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgL 1038 (1106)
.+++.+.......... .....+.+.+.++.+ .+..+.. +..||+||+||+.+ ++++.+|+++|||||....
T Consensus 76 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~l--~~~~~~~-----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNFDHP-DAFDNDLMHRTLKNI--VEGKTVE-----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCTTSG-GGBCHHHHHHHHHHH--HTTCCEE-----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCCCCc-ccccHHHHHHHHHHH--HCCCCee-----cccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 9998764322111111 111112234444433 2222222 24699999999988 5788899999999998888
Q ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEecCc
Q 001293 1039 DARAAAIVMRTVRNTVDTGRTVVCTIHQP 1067 (1106)
Q Consensus 1039 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 1067 (1106)
|.. +.++ .+.+|++++|+.
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~~ 165 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDSD 165 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCHH
T ss_pred cHH--------HHHh--cCeEEEEECCHH
Confidence 764 2222 378999999973
No 159
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.60 E-value=2.6e-17 Score=187.69 Aligned_cols=190 Identities=14% Similarity=0.143 Sum_probs=129.9
Q ss_pred eeeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccC
Q 001293 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1106)
Q Consensus 855 ~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1106)
.++.++++..++. +..+|+++ +.|.+|+++||+|+||||||||+++|+|... +..|.|.+.|.+.
T Consensus 45 ~i~~~~l~~~~~t------------g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~--~~~g~i~~~G~~~ 109 (347)
T 2obl_A 45 PLLRQVIDQPFIL------------GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS--ADIIVLALIGERG 109 (347)
T ss_dssp STTCCCCCSEECC------------SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCH
T ss_pred CeeecccceecCC------------CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC--CCEEEEEEecccH
Confidence 3566677655532 23589999 9999999999999999999999999999765 3478888888652
Q ss_pred Cc----------ccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCC
Q 001293 935 KQ----------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 1004 (1106)
Q Consensus 935 ~~----------~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g 1004 (1106)
.. ..+.+.+.++.|.+. +..+.+.-... ...+.+.....+ .+.... ...
T Consensus 110 ~ev~~~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~------------~~~~ae~~~~~~-~~vl~~---ld~ 168 (347)
T 2obl_A 110 REVNEFLALLPQSTLSKCVLVVTTSDR-----PALERMKAAFT------------ATTIAEYFRDQG-KNVLLM---MDS 168 (347)
T ss_dssp HHHHHHHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHH------------HHHHHHHHHTTT-CEEEEE---EET
T ss_pred HHHHHHHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHH------------HHHHHHHHHhcc-ccHHHH---Hhh
Confidence 11 124456788887542 22222211000 000111111101 010000 011
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----eEEEEecCccHHHHHhcCe
Q 001293 1005 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGR-----TVVCTIHQPSIDIFEAFDE 1077 (1106)
Q Consensus 1005 ~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~--~g~-----tvi~~~H~~~~~~~~~~D~ 1077 (1106)
+..||+|| ||+++| +.+|++ |+|||+.....+.+.++++.+ .|. ||++++||++ ...||+
T Consensus 169 ~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~ 235 (347)
T 2obl_A 169 VTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDE 235 (347)
T ss_dssp HHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHH
T ss_pred HHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---Chhhhh
Confidence 35699999 899999 678887 999999999999999999864 477 9999999987 356899
Q ss_pred EEEEecCCEEEEecCCC
Q 001293 1078 LFLMKRGGQEIYVGPLG 1094 (1106)
Q Consensus 1078 v~~l~~Gg~~~~~g~~g 1094 (1106)
+.+|.+ |+++..|++.
T Consensus 236 v~~i~d-G~Ivl~~~l~ 251 (347)
T 2obl_A 236 VRSILD-GHIVLTRELA 251 (347)
T ss_dssp HHHHCS-EEEEBCHHHH
T ss_pred eEEeeC-cEEEEeCCHH
Confidence 999986 6999888753
No 160
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.60 E-value=1.2e-16 Score=175.31 Aligned_cols=130 Identities=18% Similarity=0.254 Sum_probs=94.3
Q ss_pred EeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCee-eeEEEEcCccCCcccccceEEEEccCCCCCCCCCHHHH
Q 001293 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-TGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 961 (1106)
Q Consensus 883 ~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~-~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~tv~e~ 961 (1106)
+|+++| +++|++++|+||||||||||+++|+|... +. .|.|.++|.++. |++|+...+
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~---------~~~~~~~~~-------- 74 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIE---------YVFKHKKSI-------- 74 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCC---------SCCCCSSSE--------
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcce---------eecCCccee--------
Confidence 688998 99999999999999999999999999654 34 799999887642 223221100
Q ss_pred HHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 001293 962 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041 (1106)
Q Consensus 962 l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~ 1041 (1106)
.. . +.+++.. ..| |++||++|..+|++|++|||| |++
T Consensus 75 ------v~------q-----------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~ 111 (261)
T 2eyu_A 75 ------VN------Q-----------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 111 (261)
T ss_dssp ------EE------E-----------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHH
T ss_pred ------ee------H-----------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHH
Confidence 00 0 0111110 123 899999999999999999999 998
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeEEEEe
Q 001293 1042 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1106)
Q Consensus 1042 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1082 (1106)
+...+ ++. +..|.+|++|+|+.+ ..+.+|+++.|.
T Consensus 112 ~~~~~---l~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~ 146 (261)
T 2eyu_A 112 TVETA---LRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 146 (261)
T ss_dssp HHHHH---HHH-HHTTCEEEEEECCSS--HHHHHHHHHHTS
T ss_pred HHHHH---HHH-HccCCEEEEEeCcch--HHHHHHHHhhhc
Confidence 86544 333 356999999999976 467788876654
No 161
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.59 E-value=9.4e-16 Score=194.00 Aligned_cols=89 Identities=12% Similarity=0.118 Sum_probs=69.5
Q ss_pred cCCChhhhHHHHHHHHH--hcCCccceeecCCCCCCHHHHHHH-HHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEE
Q 001293 322 RGISGGQKKRVTTGEMM--VGPALALFMDEISTGLDSSTTFQI-VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1106)
Q Consensus 322 ~~LSGGqrqRvsia~al--~~~p~vllLDEptsgLD~~~~~~i-~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL 398 (1106)
+++|+|+++++.+|+++ +.+|+++||||||+|||+.....+ +..++.+....+.++++ ++|+ .++.+++|++..+
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~-aTH~-~el~~lad~~~~v 797 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMF-ATHF-HELTALANQIPTV 797 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEE-EESC-GGGGGGGGTCTTE
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEE-EcCc-HHHHHHhccccee
Confidence 36888888888888888 999999999999999999998888 45566655433455554 5666 5677899999999
Q ss_pred cCCeEEEEcChHHH
Q 001293 399 SDGQIVYQGPRELV 412 (1106)
Q Consensus 399 ~~G~iv~~G~~~~~ 412 (1106)
.+|++.+.++.+++
T Consensus 798 ~ng~v~~~~~~~~l 811 (934)
T 3thx_A 798 NNLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EeeEEEEEecCCcE
Confidence 99999988876654
No 162
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.58 E-value=1.7e-16 Score=180.94 Aligned_cols=180 Identities=14% Similarity=0.153 Sum_probs=125.0
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCC----------cccceEEEEcCC
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF----------VPQRTAAYISQH 234 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~----------~~~~~~~yv~Q~ 234 (1106)
..+|+++ +.|.+|++++|+||||||||||+++|+|..+|+ .|.|.+.|++..+. ..++.+.+++|.
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~ 134 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTS 134 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECT
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECC
Confidence 4589999 999999999999999999999999999999998 89999998652111 123567888875
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccc
Q 001293 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1106)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1106)
+. ...+.+.-.... ..+ .+ .....| .|.
T Consensus 135 ~~-----~~~~r~~~~~~~----------~~~--------------------------------ae-~~~~~~----~~v 162 (347)
T 2obl_A 135 DR-----PALERMKAAFTA----------TTI--------------------------------AE-YFRDQG----KNV 162 (347)
T ss_dssp TS-----CHHHHHHHHHHH----------HHH--------------------------------HH-HHHTTT----CEE
T ss_pred CC-----CHHHHHHHHHHH----------HHH--------------------------------HH-HHHhcc----ccH
Confidence 42 222332211000 000 00 000111 010
Q ss_pred ccccccccCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCe-----EEEEEecChhHHH
Q 001293 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT-----AVISLLQPAPETY 389 (1106)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t-----~vi~i~q~~~~~~ 389 (1106)
.+--+.+..+|+|| |||++| +++|++ |+|||+.....+.+.++++....+++ +|+..+|+.. .
T Consensus 163 l~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~ 230 (347)
T 2obl_A 163 LLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--D 230 (347)
T ss_dssp EEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--C
T ss_pred HHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--C
Confidence 00001244699999 899999 577776 99999999999999998754212344 5666677766 6
Q ss_pred hhcCeEEEEcCCeEEEEcChHHH
Q 001293 390 DLFDDIILLSDGQIVYQGPRELV 412 (1106)
Q Consensus 390 ~~~D~iilL~~G~iv~~G~~~~~ 412 (1106)
..||++++|.+|+|+..|+..++
T Consensus 231 ~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 231 PIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp HHHHHHHHHCSEEEEBCHHHHTT
T ss_pred hhhhheEEeeCcEEEEeCCHHHc
Confidence 78999999999999999988765
No 163
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.57 E-value=2.1e-15 Score=182.55 Aligned_cols=155 Identities=13% Similarity=0.097 Sum_probs=110.7
Q ss_pred eEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHHHHHHHHH
Q 001293 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSA 251 (1106)
Q Consensus 172 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~ 251 (1106)
++.+++|++++|+||||||||||++.++|...+. |+ +.+.|++|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~----G~--------------~vi~~~~ee~~----~~l~~~~~--- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN----KE--------------RAILFAYEESR----AQLLRNAY--- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT----TC--------------CEEEEESSSCH----HHHHHHHH---
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC----CC--------------CEEEEEEeCCH----HHHHHHHH---
Confidence 5699999999999999999999999999997663 32 12455666531 01111110
Q ss_pred HhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCCChhhhHH
Q 001293 252 RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKR 331 (1106)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqR 331 (1106)
+ . ++ +. +. +...|+....+. .+..|||||+||
T Consensus 330 ~---~-----------------g~----~~------------------~~-~~~~g~~~~~~~-----~p~~LS~g~~q~ 361 (525)
T 1tf7_A 330 S---W-----------------GM----DF------------------EE-MERQNLLKIVCA-----YPESAGLEDHLQ 361 (525)
T ss_dssp T---T-----------------SC----CH------------------HH-HHHTTSEEECCC-----CGGGSCHHHHHH
T ss_pred H---c-----------------CC----CH------------------HH-HHhCCCEEEEEe-----ccccCCHHHHHH
Confidence 0 0 00 00 01 123455444443 345699999999
Q ss_pred HHHHHHHhcCCccceeecCCCCCCHH-----HHHHHHHHHHHHHHhcCCeEEEEEecCh----------hHHHhhcCeEE
Q 001293 332 VTTGEMMVGPALALFMDEISTGLDSS-----TTFQIVNCLRQNIHINSGTAVISLLQPA----------PETYDLFDDII 396 (1106)
Q Consensus 332 vsia~al~~~p~vllLDEptsgLD~~-----~~~~i~~~l~~~~~~~~~t~vi~i~q~~----------~~~~~~~D~ii 396 (1106)
+.+|+++..+|+++++| ||+|||.. .+..+.+.++.+.. .+.|+++ ++|.. ..+..++|+|+
T Consensus 362 ~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-~g~tvil-vsh~~~~~~~~~~~~~~l~~~~D~vi 438 (525)
T 1tf7_A 362 IIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-EEITGLF-TNTSDQFMGAHSITDSHISTITDTII 438 (525)
T ss_dssp HHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-TTCEEEE-EEECSSSSCCCSSCSSCCTTTCSEEE
T ss_pred HHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-CCCEEEE-EECcccccCcccccCcccceeeeEEE
Confidence 99999999999999999 99999999 88888898887653 4555555 45554 56778999999
Q ss_pred EEcCCe
Q 001293 397 LLSDGQ 402 (1106)
Q Consensus 397 lL~~G~ 402 (1106)
+|.+|+
T Consensus 439 ~L~~ge 444 (525)
T 1tf7_A 439 LLQYVE 444 (525)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999886
No 164
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.57 E-value=2.6e-16 Score=169.14 Aligned_cols=153 Identities=18% Similarity=0.148 Sum_probs=92.6
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeeeEEEEcCccCCcccccceEEEEccCCCCCCCCCHHHHHH
Q 001293 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-----GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 963 (1106)
Q Consensus 889 ~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~-----~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~tv~e~l~ 963 (1106)
+.+++|++++|+||||||||||+++|+|.... +...+.+.+++.+... .+.++++.|...+.+. |
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~------ 89 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-E------ 89 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-H------
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-H------
Confidence 46999999999999999999999999983221 1123466666543210 0112222222111111 1
Q ss_pred HHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCH-HHHHHHHHHHHHhc-------CCCeEEEeCCC
Q 001293 964 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST-EQRKRLTIAVELVA-------NPSIIFMDEPT 1035 (1106)
Q Consensus 964 ~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSg-Gqrqrl~iA~aL~~-------~p~illLDEPt 1035 (1106)
+.+.+.+. ...+. .+++.+..+.+++. +|++|++||||
T Consensus 90 ----------------------~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 90 ----------------------VLKHIYVA------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp ----------------------HHHTEEEE------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred ----------------------HhhcEEEE------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 22221110 01233 34444666666666 89999999999
Q ss_pred CCCCHH-------H-----HHHHHHHHHHHHh-CCCeEEEEecCccH---HHHHhcCeEEEEecCC
Q 001293 1036 SGLDAR-------A-----AAIVMRTVRNTVD-TGRTVVCTIHQPSI---DIFEAFDELFLMKRGG 1085 (1106)
Q Consensus 1036 sgLD~~-------~-----~~~i~~~l~~~~~-~g~tvi~~~H~~~~---~~~~~~D~v~~l~~Gg 1085 (1106)
+++|+. + ...+++.|+++++ .|+|||+++|..+. .+...+|++++|++|+
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 999984 2 2366777777654 49999999994431 2667789999999754
No 165
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.57 E-value=1.8e-15 Score=190.76 Aligned_cols=144 Identities=15% Similarity=0.127 Sum_probs=96.4
Q ss_pred ceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcccccceEEEEccCCCCCCCCCHH
Q 001293 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 959 (1106)
Q Consensus 880 ~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~tv~ 959 (1106)
+..+++|||+.+++|++++|+|||||||||||+++++..... .. |...... ...++++ +..+..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a-q~------g~~vpa~--~~~i~~~---d~i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA-QI------GSYVPAE--EATIGIV---DGIFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-HH------TCCBSSS--EEEEECC---SEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-hc------Cccccch--hhhhhHH---HHHHHhCChH
Confidence 456899999999999999999999999999999998531100 00 1000000 0011111 1111111111
Q ss_pred HHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 001293 960 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039 (1106)
Q Consensus 960 e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD 1039 (1106)
+++ .. +.+.+|+|++|++.|+++ +.+|++|||||||+|||
T Consensus 727 d~l----------------------------------~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 DNI----------------------------------YK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred HHH----------------------------------HH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 111 11 135689999999999998 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHh-CCCeEEEEecCccHHHHHhcCe
Q 001293 1040 ARAAAIVM-RTVRNTVD-TGRTVVCTIHQPSIDIFEAFDE 1077 (1106)
Q Consensus 1040 ~~~~~~i~-~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~ 1077 (1106)
+.....+. .+++.+.+ .|+|||++||+++ +.+.+|+
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~ 804 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKN 804 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhh
Confidence 99888776 77777765 5999999999975 4455553
No 166
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.56 E-value=3.8e-16 Score=167.82 Aligned_cols=154 Identities=17% Similarity=0.124 Sum_probs=91.7
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---C-CceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHHHHHH
Q 001293 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT---L-KVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLA 248 (1106)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~---~-~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1106)
+-+++|++++|+||||||||||+++|+|.+.+. . ...|.|.+++.+.. ..+.++++.|+..+.+. ||.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---CHHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---CHHHHHHHHHHcCCCHH-HHhhcEE
Confidence 579999999999999999999999999955441 0 01346666664310 01223333443222222 3333322
Q ss_pred HHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCCChhh
Q 001293 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (1106)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1106)
+. ...++++
T Consensus 96 ~~-----------------------------------------------------------------------~~~~~~~ 104 (231)
T 4a74_A 96 VA-----------------------------------------------------------------------RAFNSNH 104 (231)
T ss_dssp EE-----------------------------------------------------------------------ECCSHHH
T ss_pred EE-----------------------------------------------------------------------ecCChHH
Confidence 11 1123322
Q ss_pred -hHHHHHHHHHhc-------CCccceeecCCCCCCHHH------------HHHHHHHHHHHHHhcCCeEEEEEecChhH-
Q 001293 329 -KKRVTTGEMMVG-------PALALFMDEISTGLDSST------------TFQIVNCLRQNIHINSGTAVISLLQPAPE- 387 (1106)
Q Consensus 329 -rqRvsia~al~~-------~p~vllLDEptsgLD~~~------------~~~i~~~l~~~~~~~~~t~vi~i~q~~~~- 387 (1106)
++.+..++.++. +|+++++||||++||+.. ..++++.|+++++..+.| |+.++|...+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~t-vi~vtH~~~~~ 183 (231)
T 4a74_A 105 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIA-VFVTNQVQANG 183 (231)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCE-EEEEEECC---
T ss_pred HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCe-EEEEeecccCc
Confidence 233444444444 899999999999999842 236778888777654445 4556774444
Q ss_pred ---HHhhcCeEEEEcCCe
Q 001293 388 ---TYDLFDDIILLSDGQ 402 (1106)
Q Consensus 388 ---~~~~~D~iilL~~G~ 402 (1106)
+...+|+++.|++|+
T Consensus 184 g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 184 GHILAHSATLRVYLRKGK 201 (231)
T ss_dssp ------CCSEEEEEEECT
T ss_pred chhhHhhceEEEEEEecC
Confidence 788999999998753
No 167
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.53 E-value=9.4e-16 Score=190.81 Aligned_cols=128 Identities=21% Similarity=0.158 Sum_probs=94.5
Q ss_pred eEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcccccceEEEEccCCCCCCCCCHHH
Q 001293 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960 (1106)
Q Consensus 881 ~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~tv~e 960 (1106)
..+++|+|+. |++++|+|||||||||||++|+|.... ...|.+. +. .+..+|+++| +++.+++.|
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~v----pa----~~~~i~~v~~---i~~~~~~~d 630 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSFV----PA----EEAHLPLFDG---IYTRIGASD 630 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCCB----SS----SEEEECCCSE---EEEECCC--
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCcee----eh----hccceeeHHH---hhccCCHHH
Confidence 4689999999 999999999999999999999985310 0123221 11 1234667665 233344444
Q ss_pred HHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHH--hcCCCeEEEeCC---C
Q 001293 961 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL--VANPSIIFMDEP---T 1035 (1106)
Q Consensus 961 ~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL--~~~p~illLDEP---t 1035 (1106)
++. .++|+|+++++.+|+++ +.+|+++||||| |
T Consensus 631 ~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGT 668 (765)
T 1ewq_A 631 DLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGT 668 (765)
T ss_dssp ----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTS
T ss_pred HHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCC
Confidence 332 13799999999999999 999999999999 9
Q ss_pred CCCCHHHH-HHHHHHHHHHHhCCCeEEEEecCcc
Q 001293 1036 SGLDARAA-AIVMRTVRNTVDTGRTVVCTIHQPS 1068 (1106)
Q Consensus 1036 sgLD~~~~-~~i~~~l~~~~~~g~tvi~~~H~~~ 1068 (1106)
++||..+. ..+++.+.+ .|+|+|++||+.+
T Consensus 669 s~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~ 699 (765)
T 1ewq_A 669 SSLDGVAIATAVAEALHE---RRAYTLFATHYFE 699 (765)
T ss_dssp CHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH
T ss_pred CCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH
Confidence 99999875 567787776 4899999999964
No 168
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.53 E-value=6.9e-16 Score=197.74 Aligned_cols=160 Identities=14% Similarity=0.070 Sum_probs=110.2
Q ss_pred ceeeeceeEEEeC-------CeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEE-EEcCCCC
Q 001293 165 LTILKDVSGVIKP-------GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAA-YISQHDN 236 (1106)
Q Consensus 165 ~~iL~~vs~~i~~-------G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~-yv~Q~d~ 236 (1106)
..+++|+++.+++ |++++|+|||||||||||++| |++.+ ..++| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~--------------------~aqiG~~Vpq~~~ 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV--------------------MAQMGCYVPAEVC 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--------------------HHTTTCCEESSEE
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--------------------HhheeEEeccCcC
Confidence 4589999999987 999999999999999999999 98753 11344 8999652
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccc
Q 001293 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (1106)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1106)
.+||.++|.. + +|+.+...
T Consensus 828 ---~l~v~d~I~~--r-----------------------------------------------------ig~~d~~~--- 846 (1022)
T 2o8b_B 828 ---RLTPIDRVFT--R-----------------------------------------------------LGASDRIM--- 846 (1022)
T ss_dssp ---EECCCSBEEE--E-----------------------------------------------------CC---------
T ss_pred ---CCCHHHHHHH--H-----------------------------------------------------cCCHHHHh---
Confidence 4566555421 0 01111000
Q ss_pred ccccccCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHH-HHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001293 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ-IVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1106)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~-i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1106)
.+...+|++++ ++++|++++.+|+++|||||++|+|+..... ++..|+.+.... +.+++.++|+...+...+|++
T Consensus 847 --~~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~-g~~vl~~TH~~el~~~~~d~~ 922 (1022)
T 2o8b_B 847 --SGESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETI-KCRTLFSTHYHSLVEDYSQNV 922 (1022)
T ss_dssp -----CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTS-CCEEEEECCCHHHHHHTSSCS
T ss_pred --hchhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHHHhCCcc
Confidence 01124677666 4999999999999999999999999988544 667888775432 445555788888888899999
Q ss_pred EEEcCCeEE--EEcChHH
Q 001293 396 ILLSDGQIV--YQGPREL 411 (1106)
Q Consensus 396 ilL~~G~iv--~~G~~~~ 411 (1106)
.++ +|++. +.|+.++
T Consensus 923 ~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 923 AVR-LGHMACMVENECED 939 (1022)
T ss_dssp SEE-EEEEEEC-------
T ss_pred eee-cCeEEEEEecCccc
Confidence 887 58887 5565543
No 169
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.53 E-value=1.5e-16 Score=169.11 Aligned_cols=145 Identities=14% Similarity=0.134 Sum_probs=103.8
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCC--CCCCHHHHHHHHHH
Q 001293 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHI--GEMTVRETLAFSAR 252 (1106)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~--~~lTV~E~l~f~~~ 252 (1106)
.++|++++|+||||||||||+++|+|++.| .++|++|++.++ ..+|+++++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999998753 388999987665 56899888765321
Q ss_pred hcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCCChhh----
Q 001293 253 CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ---- 328 (1106)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq---- 328 (1106)
.. ... + ...+...++.+++.+..+.. ...+|+||
T Consensus 61 ~~---~~~-------------------~---------------~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~ 98 (211)
T 3asz_A 61 HP---DAF-------------------D---------------LALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPR 98 (211)
T ss_dssp SG---GGB-------------------C---------------HHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSS
T ss_pred Ch---hhh-------------------h---------------HHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCC
Confidence 00 000 0 01233445666665544432 34589986
Q ss_pred hHHHHHHHHHhcCCccceeecCCCC-------CCHHHHHHHHHHHHHHHHhcCCeEEEEEec
Q 001293 329 KKRVTTGEMMVGPALALFMDEISTG-------LDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383 (1106)
Q Consensus 329 rqRvsia~al~~~p~vllLDEptsg-------LD~~~~~~i~~~l~~~~~~~~~t~vi~i~q 383 (1106)
+||+++|++++.+|.++++||||++ ||+.....+.+.+++.....+.+++.+.|+
T Consensus 99 ~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 99 RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQ 160 (211)
T ss_dssp CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4788999999999999999999999 999999999998876543345555544443
No 170
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.52 E-value=3.6e-17 Score=170.60 Aligned_cols=158 Identities=20% Similarity=0.232 Sum_probs=105.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCc-ccceEEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 001293 178 GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 256 (1106)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~ 256 (1106)
|++++|+||||||||||+++|+|.++ + +| |.++|.+..+.. .++.++|++|+. ... ++++ ++..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~~-- 65 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRVG-- 65 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EECC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hccc--
Confidence 78999999999999999999999987 6 79 999987764432 246789999963 111 1111 0000
Q ss_pred CchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc-cccccccccccccCCChhhhHHHH-H
Q 001293 257 GTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGDEMIRGISGGQKKRVT-T 334 (1106)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~~LSGGqrqRvs-i 334 (1106)
+ +.+ ...+..+|.. ...+|||||+++. +
T Consensus 66 ------------------~-------------------------------~~~~~~~~~~v~~~-~~~ls~~er~~~~~l 95 (189)
T 2i3b_A 66 ------------------L-------------------------------EPPPGKRECRVGQY-VVDLTSFEQLALPVL 95 (189)
T ss_dssp ------------------C-------------------------------CCCSSSCCEESSSS-EECHHHHHTTTTTTT
T ss_pred ------------------c-------------------------------cCCccccccccceE-EEcchHHHHHHHHHH
Confidence 0 000 0011244433 3469999999984 4
Q ss_pred HH---HHhcCCccceeec--CCCCCCHHHHHHHHHHHHHHHHhcCCeEEE---EEecChhHHHhhcCeEEEEcCCeEEEE
Q 001293 335 GE---MMVGPALALFMDE--ISTGLDSSTTFQIVNCLRQNIHINSGTAVI---SLLQPAPETYDLFDDIILLSDGQIVYQ 406 (1106)
Q Consensus 335 a~---al~~~p~vllLDE--ptsgLD~~~~~~i~~~l~~~~~~~~~t~vi---~i~q~~~~~~~~~D~iilL~~G~iv~~ 406 (1106)
++ |+..+|+++|||| |+..+|......+.+.++ ...++|+ +++|+.+ ..+.|+|..+.+|+|+..
T Consensus 96 ~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~-----~~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 96 RNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS-----TPGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp CCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH-----CSSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEEC
T ss_pred hhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh-----CCCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEe
Confidence 44 5789999999999 898899876555555543 2345553 3336553 456788888888998764
Q ss_pred c
Q 001293 407 G 407 (1106)
Q Consensus 407 G 407 (1106)
.
T Consensus 169 ~ 169 (189)
T 2i3b_A 169 T 169 (189)
T ss_dssp C
T ss_pred C
Confidence 3
No 171
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.52 E-value=5e-16 Score=177.81 Aligned_cols=168 Identities=20% Similarity=0.197 Sum_probs=99.5
Q ss_pred eeece-eEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC--CCC-CCceeE-EEEcCccCCCCcccceEEEEcCCCCCCCCC
Q 001293 167 ILKDV-SGVIKPGRLTLLLGPPSSGKTTLLLALAGKL--DPT-LKVSGT-VTYNGHDMDEFVPQRTAAYISQHDNHIGEM 241 (1106)
Q Consensus 167 iL~~v-s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~-~~~~G~-V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (1106)
.|+++ ++.+++|++++|+||||||||||++.|++.. +|+ ....|+ |++++.+. + ..+.+++++|...+++.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~--~-~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--F-RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC--C-CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC--C-CHHHHHHHHHHcCCCHH-
Confidence 45565 6899999999999999999999999999997 444 011267 88888653 1 12345666665433332
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccc
Q 001293 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
++.+|+.+...
T Consensus 195 ~v~~ni~~~~~--------------------------------------------------------------------- 205 (349)
T 1pzn_A 195 EVLKHIYVARA--------------------------------------------------------------------- 205 (349)
T ss_dssp HHGGGEEEEEC---------------------------------------------------------------------
T ss_pred HHhhCEEEEec---------------------------------------------------------------------
Confidence 44444432110
Q ss_pred cCCChhhhHHHHHHHHHh-------cCCccceeecCCCCCCHHH------------HHHHHHHHHHHHHhcCCeEEEEEe
Q 001293 322 RGISGGQKKRVTTGEMMV-------GPALALFMDEISTGLDSST------------TFQIVNCLRQNIHINSGTAVISLL 382 (1106)
Q Consensus 322 ~~LSGGqrqRvsia~al~-------~~p~vllLDEptsgLD~~~------------~~~i~~~l~~~~~~~~~t~vi~i~ 382 (1106)
--|++|+|++.++++++ .+|+++++||||++||+.. ..++++.|+++++..+ ++|+.++
T Consensus 206 -~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~-~tvii~~ 283 (349)
T 1pzn_A 206 -FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYD-IAVFVTN 283 (349)
T ss_dssp -CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTT-CEEEEEE
T ss_pred -CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcC-cEEEEEc
Confidence 01334455555554444 7899999999999999852 3566677777766444 4555566
Q ss_pred cChhHHHhhcCeEEEEcCCeEEEEcCh
Q 001293 383 QPAPETYDLFDDIILLSDGQIVYQGPR 409 (1106)
Q Consensus 383 q~~~~~~~~~D~iilL~~G~iv~~G~~ 409 (1106)
|........|++......|+++.++..
T Consensus 284 h~~~~~~~~~~~~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 284 QVQARPDAFFGDPTRPIGGHILAHSAT 310 (349)
T ss_dssp ECC---------------CCCCCTTCS
T ss_pred ccccccccccCCccccCCcceEeecCc
Confidence 766665556667777778877766543
No 172
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.52 E-value=2.4e-14 Score=142.87 Aligned_cols=83 Identities=17% Similarity=0.303 Sum_probs=68.9
Q ss_pred cccccCCChhhhHHHHHH------HHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhh
Q 001293 318 DEMIRGISGGQKKRVTTG------EMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (1106)
Q Consensus 318 ~~~~~~LSGGqrqRvsia------~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~ 391 (1106)
++.+..||||||||++|| ++|+.+|+++||||||+|||+.+...+.+.|+++.. .+.++|+ ++|+. ++.+.
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii-vsH~~-~~~~~ 128 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVIL-VSHDE-ELKDA 128 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-GSSEEEE-EESCG-GGGGG
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-cCCEEEE-EEChH-HHHHh
Confidence 455678999999999876 899999999999999999999999999999998654 3445544 56665 67889
Q ss_pred cCeEEEE--cCCeE
Q 001293 392 FDDIILL--SDGQI 403 (1106)
Q Consensus 392 ~D~iilL--~~G~i 403 (1106)
||++++| .+|..
T Consensus 129 ~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 129 ADHVIRISLENGSS 142 (148)
T ss_dssp CSEEEEEEEETTEE
T ss_pred CCEEEEEEcCCCeE
Confidence 9999999 46643
No 173
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.51 E-value=2.4e-15 Score=164.95 Aligned_cols=133 Identities=15% Similarity=0.183 Sum_probs=93.9
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHHH
Q 001293 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1106)
++|+|+| +++|++++|+|||||||||||++|+|.++|+ .+|+|.++|.++... .+...++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~-~~~~~~~v~q~----------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYV-FKHKKSIVNQR----------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSC-CCCSSSEEEEE-----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceee-cCCcceeeeHH-----------
Confidence 4899999 9999999999999999999999999998762 169999999765321 11111122110
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCCC
Q 001293 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1106)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1106)
.+|++. ..+
T Consensus 79 -----------------------------------------------------------~~gl~~-----------~~l- 87 (261)
T 2eyu_A 79 -----------------------------------------------------------EVGEDT-----------KSF- 87 (261)
T ss_dssp -----------------------------------------------------------EBTTTB-----------SCH-
T ss_pred -----------------------------------------------------------HhCCCH-----------HHH-
Confidence 012210 112
Q ss_pred hhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001293 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1106)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~ 400 (1106)
|++||++|..+|+++++|||| |..+...+++ . +. .+.++++ ++|... +...+|+++.|..
T Consensus 88 -----~~~la~aL~~~p~illlDEp~---D~~~~~~~l~---~-~~-~g~~vl~-t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 -----ADALRAALREDPDVIFVGEMR---DLETVETALR---A-AE-TGHLVFG-TLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp -----HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH---H-HH-TTCEEEE-EECCSS-HHHHHHHHHHTSC
T ss_pred -----HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH---H-Hc-cCCEEEE-EeCcch-HHHHHHHHhhhcC
Confidence 899999999999999999999 9888665443 2 22 3455544 555544 7788999988864
No 174
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.51 E-value=4.8e-16 Score=174.46 Aligned_cols=157 Identities=11% Similarity=0.146 Sum_probs=80.3
Q ss_pred ccceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCC-CCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCC
Q 001293 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK-LDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEM 241 (1106)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~-~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (1106)
.++.+++|+++.| +|+||||||||||++.|+|. +.|+ +| |.++|.++......+.++|++|.+.....+
T Consensus 9 ~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~l 78 (301)
T 2qnr_A 9 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEASTVEIEERGVKLRL 78 (301)
T ss_dssp ---------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEE
T ss_pred CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEEEEecCCCcccCc
Confidence 3456999999998 99999999999999999997 7776 78 888887664322235679999988888889
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccc
Q 001293 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
||.||..++..... ..+++ ...+++.+. .+ ...
T Consensus 79 tv~Dt~g~~~~~~~-~e~~~-----------------------------------~l~~~l~~~------~~-----~~~ 111 (301)
T 2qnr_A 79 TVVDTPGYGDAINC-RDCFK-----------------------------------TIISYIDEQ------FE-----RYL 111 (301)
T ss_dssp EEEEEC------------CT-----------------------------------THHHHHHHH------HH-----HHH
T ss_pred chhhhhhhhhhcCc-HHHHH-----------------------------------HHHHHHHHH------HH-----HHH
Confidence 99999887542110 00000 011111111 11 234
Q ss_pred cCCChhhhHHHHHHHHHhcCCccceeecCCCC-CCHHHHHHHHHHHHHHHHhcCCeEEEEEecCh
Q 001293 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTG-LDSSTTFQIVNCLRQNIHINSGTAVISLLQPA 385 (1106)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsg-LD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~ 385 (1106)
+++|||||||+.+||+++ ++++||||++ ||+... +.++++.. ....++|...|+.
T Consensus 112 ~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~-~~~iilV~~K~Dl 167 (301)
T 2qnr_A 112 HDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHN-KVNIVPVIAKADT 167 (301)
T ss_dssp HHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTT-TSCEEEEECCGGG
T ss_pred HHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHh-cCCEEEEEEeCCC
Confidence 569999999999998885 9999999985 999873 44555432 2245555555554
No 175
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.51 E-value=4.2e-17 Score=173.35 Aligned_cols=145 Identities=14% Similarity=0.116 Sum_probs=109.7
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcccccceEEEEccCCCCC--CCCCHHHHHHHHHhh
Q 001293 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS--PFVTIYESLLFSAWL 968 (1106)
Q Consensus 891 v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~--~~~tv~e~l~~~~~~ 968 (1106)
.++|+++||+|+||||||||+++|+|... + .++|++|++.+. ..+|+.+++.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~--~-------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG--E-------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG--G-------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC--C-------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 47899999999999999999999998532 1 368899988765 4678988865421
Q ss_pred cCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHH----HHHHHHHHHHhcCCCeEEEeCCCCC-------
Q 001293 969 RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ----RKRLTIAVELVANPSIIFMDEPTSG------- 1037 (1106)
Q Consensus 969 r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGq----rqrl~iA~aL~~~p~illLDEPtsg------- 1037 (1106)
..+ .....+.+.++++.+++.+..+.. +..+|+|| +||+++|++++.+|.++++||||++
T Consensus 60 ~~~----~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 60 DHP----DAFDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp TSG----GGBCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred CCh----hhhhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 111 111123466777887776654442 34688886 4788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhCCCeEEEEecCc
Q 001293 1038 LDARAAAIVMRTVRNT-VDTGRTVVCTIHQP 1067 (1106)
Q Consensus 1038 LD~~~~~~i~~~l~~~-~~~g~tvi~~~H~~ 1067 (1106)
||+.....+++.+++. .+.|+|++.++|+.
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999988875 45699999999974
No 176
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.51 E-value=1.3e-15 Score=165.73 Aligned_cols=169 Identities=12% Similarity=0.071 Sum_probs=94.7
Q ss_pred eeece-eEEEeCCeEEEEEcCCCCcHHHHHHHHh--CCCCCCCCceeEEEEcCccCCCCcc--cceEEEEcCCCCCCCCC
Q 001293 167 ILKDV-SGVIKPGRLTLLLGPPSSGKTTLLLALA--GKLDPTLKVSGTVTYNGHDMDEFVP--QRTAAYISQHDNHIGEM 241 (1106)
Q Consensus 167 iL~~v-s~~i~~G~~~~llGp~GsGKSTLL~~L~--G~~~~~~~~~G~V~~~G~~~~~~~~--~~~~~yv~Q~d~~~~~l 241 (1106)
.|+++ .+-|++|++++|+||||||||||+++|+ |...+. +|.+.+++........ .+.++|++|+....+.+
T Consensus 18 ~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 94 (251)
T 2ehv_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG---EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKI 94 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSE
T ss_pred hHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCE
Confidence 34443 2489999999999999999999999999 663444 6777776643211000 12334444432222222
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccc
Q 001293 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
++.++........ . . +. .. ..
T Consensus 95 ~~~~~~~~~~~~~-------------~-------------------------------~---~~-------~~-----~~ 115 (251)
T 2ehv_A 95 AIVDGVSSVVGLP-------------S-------------------------------E---EK-------FV-----LE 115 (251)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred EEEEccccccccc-------------c-------------------------------c---cc-------ee-----cc
Confidence 2222221100000 0 0 00 00 00
Q ss_pred cCCChhhhHHHHHHHHHhcCCccceeecCCCCCC-----HHHHHHHHHHHHHHHHhcCCeEEEEEecChhHH--------
Q 001293 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLD-----SSTTFQIVNCLRQNIHINSGTAVISLLQPAPET-------- 388 (1106)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD-----~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~-------- 388 (1106)
...+-++..+...+..-..+|+++++||||++|| ......+.+.++.+.. .+.|++ .++|...++
T Consensus 116 ~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~-~g~tii-~vtH~~~~~~~~~~~~~ 193 (251)
T 2ehv_A 116 DRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE-MGVTTI-LTTEAPDPQHGKLSRYG 193 (251)
T ss_dssp --CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH-HCCEEE-EEECCC----CCSSSSS
T ss_pred CcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH-CCCeEE-EEECCCCCCcccccccC
Confidence 0122334444444444467999999999999997 5666667788877643 455554 466777776
Q ss_pred -Hhhc-CeEEEEc
Q 001293 389 -YDLF-DDIILLS 399 (1106)
Q Consensus 389 -~~~~-D~iilL~ 399 (1106)
..+| |+|++|+
T Consensus 194 i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 194 IEEFIARGVIVLD 206 (251)
T ss_dssp CGGGGCSEEEEEE
T ss_pred hhhEeeeEEEEEe
Confidence 6788 9999995
No 177
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.50 E-value=1.2e-15 Score=170.94 Aligned_cols=147 Identities=13% Similarity=0.109 Sum_probs=101.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcc-------cc--cceEEEEccCCCCCCCCCHHHHHH
Q 001293 893 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TF--ARISGYCEQNDIHSPFVTIYESLL 963 (1106)
Q Consensus 893 ~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~q~~~~~~~~tv~e~l~ 963 (1106)
+|++++|+||||||||||++.|+|... +..|+|.+.|.+..+. .+ ++.++|++|++...|..+++|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~--~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ--NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 689999999999999999999999654 2468999999886421 11 345899999988888889999987
Q ss_pred HHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--eEEEeCCCCCCCHH
Q 001293 964 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDAR 1041 (1106)
Q Consensus 964 ~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~--illLDEPtsgLD~~ 1041 (1106)
+... +. .+ ..+++..++.+..+. .++..++||++|||+++.+|+ ++.|| |+++.
T Consensus 179 ~~~~-~~-~d----------~~llDt~G~~~~~~~--------~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~--- 234 (304)
T 1rj9_A 179 AMKA-RG-YD----------LLFVDTAGRLHTKHN--------LMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQ--- 234 (304)
T ss_dssp HHHH-HT-CS----------EEEECCCCCCTTCHH--------HHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCT---
T ss_pred HHHh-CC-CC----------EEEecCCCCCCchHH--------HHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHH---
Confidence 6431 11 00 012222333222221 135566899999999999999 44555 45444
Q ss_pred HHHHHHHHHHHHHhC-CCeEEEEecCcc
Q 001293 1042 AAAIVMRTVRNTVDT-GRTVVCTIHQPS 1068 (1106)
Q Consensus 1042 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~ 1068 (1106)
.+++.++++.+. |.|+|++||+..
T Consensus 235 ---~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 235 ---NGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp ---HHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred ---HHHHHHHHHHHHcCCcEEEEECCcc
Confidence 455555555433 899999999743
No 178
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.50 E-value=4e-15 Score=186.25 Aligned_cols=147 Identities=14% Similarity=0.043 Sum_probs=96.4
Q ss_pred eEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcccccceEEEEccCCCCCCCCCHHH
Q 001293 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960 (1106)
Q Consensus 881 ~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~tv~e 960 (1106)
..+++|+++. ++|++++|+|||||||||||++|+|.... +. .|...... ...+++++| +++.+++.|
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~----~q---~G~~vpa~--~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALM----AY---IGSYVPAQ--KVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHH----HT---TTCCBSSS--EEEECCCCE---EEEEEC---
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHH----Hh---cCcccchh--cccceeHHH---HHhhCCHHH
Confidence 4689999999 99999999999999999999999984210 00 11111111 123455444 233344444
Q ss_pred HHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 001293 961 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040 (1106)
Q Consensus 961 ~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~ 1040 (1106)
++..+ .+.+|+|+++ +..+..++.+|+++|||||++|+|+
T Consensus 662 ~l~~~---------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~ 701 (800)
T 1wb9_A 662 DLASG---------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTST 701 (800)
T ss_dssp -----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSS
T ss_pred HHHhh---------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCCh
Confidence 43210 1246777764 4555557899999999999999998
Q ss_pred HHHHHH-HHHHHHHHh-CCCeEEEEecCccHHHHHhcCeEEEEe
Q 001293 1041 RAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1106)
Q Consensus 1041 ~~~~~i-~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1082 (1106)
.....+ +..++.+.+ .|+++|++||+++ +.+.+|++..++
T Consensus 702 ~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~ 743 (800)
T 1wb9_A 702 YDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVA 743 (800)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEE
T ss_pred hHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceE
Confidence 766554 788888877 4999999999975 455777654343
No 179
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.49 E-value=1.1e-15 Score=171.51 Aligned_cols=156 Identities=13% Similarity=0.049 Sum_probs=83.3
Q ss_pred ceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCC-CCCCeeeeEEEEcCccCCcccccceEEEEccCCCCCCCCCH
Q 001293 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 958 (1106)
Q Consensus 880 ~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~-~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~tv 958 (1106)
++.++++++|.| +|+|+||||||||++.|+|. .. +..| +.++|.+.......+.++|++|.+.....+|+
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv 80 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTV 80 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEEEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEecCCCcccCcch
Confidence 456899999988 99999999999999999986 33 3466 77777665432223457899998777777888
Q ss_pred HHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCC-
Q 001293 959 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG- 1037 (1106)
Q Consensus 959 ~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsg- 1037 (1106)
.|+.-++.... .. +.....++.+.+. .+.. ..++|||||||+.+||+++ ++++||||++
T Consensus 81 ~Dt~g~~~~~~-~~----e~~~~l~~~l~~~------~~~~-----~~~~sgg~rqrv~~ara~~----ll~ldePt~~~ 140 (301)
T 2qnr_A 81 VDTPGYGDAIN-CR----DCFKTIISYIDEQ------FERY-----LHDESGLNRRHIIDNRVHC----CFYFISPFGHG 140 (301)
T ss_dssp EEEC----------------CTTHHHHHHHH------HHHH-----HHHHTSSCCTTCCCCCCCE----EEEEECSSSSS
T ss_pred hhhhhhhhhcC-cH----HHHHHHHHHHHHH------HHHH-----HHHhCHHhhhhhhhhhhhh----eeeeecCcccC
Confidence 88776653221 00 0000111112111 1222 2358999999999998875 9999999985
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCeEEEEecCcc
Q 001293 1038 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPS 1068 (1106)
Q Consensus 1038 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~ 1068 (1106)
||+... +.++++... +.++|++.||+.
T Consensus 141 Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 141 LKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp CCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999874 445555433 788999999974
No 180
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.49 E-value=5.5e-14 Score=165.97 Aligned_cols=75 Identities=17% Similarity=0.304 Sum_probs=63.4
Q ss_pred cCCChhhhHHHHHHHHHh----cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 001293 322 RGISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1106)
Q Consensus 322 ~~LSGGqrqRvsia~al~----~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iil 397 (1106)
..||||||||++||++|+ .+|++++||||+++||+.....+.+.|+++.. .++.++.++|+ .+....||+++.
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~~~ii~th~-~~~~~~~d~~~~ 408 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFIVISLK-NTMFEKSDALVG 408 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEEEECSC-HHHHTTCSEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc--CCCEEEEEECC-HHHHHhCCEEEE
Confidence 459999999999999999 68999999999999999999999999987532 23445556666 567889999999
Q ss_pred Ec
Q 001293 398 LS 399 (1106)
Q Consensus 398 L~ 399 (1106)
|.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 96
No 181
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.49 E-value=2.2e-14 Score=180.99 Aligned_cols=155 Identities=13% Similarity=0.131 Sum_probs=97.9
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHH
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
..|++|||+.+++|++++|+|||||||||||+++++..-.. ..| . +.+... +.++.-+..+..+.+.
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g------~----~vpa~~-~~i~~~d~i~~~ig~~ 726 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIG------S----YVPAEE-ATIGIVDGIFTRMGAA 726 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHT------C----CBSSSE-EEEECCSEEEEEC---
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcC------c----cccchh-hhhhHHHHHHHhCChH
Confidence 56899999999999999999999999999999998642110 001 0 011110 1111111122222222
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCC
Q 001293 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1106)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1106)
+++. .....+
T Consensus 727 d~l~----------------------------------------------------------------------~~~stf 736 (918)
T 3thx_B 727 DNIY----------------------------------------------------------------------KGRSTF 736 (918)
T ss_dssp -----------------------------------------------------------------------------CCH
T ss_pred HHHH----------------------------------------------------------------------HhHHHh
Confidence 2111 112358
Q ss_pred ChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHH-HHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE-EcCCe
Q 001293 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIV-NCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL-LSDGQ 402 (1106)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~-~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iil-L~~G~ 402 (1106)
|+|++|++.|+++ +.+|+++||||||+|||+.....+. ..++.+....+.++ +.++|+. +..+++|+.-- +.+++
T Consensus 737 s~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tv-l~vTH~~-el~~l~~~~~~~v~n~~ 813 (918)
T 3thx_B 737 MEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLT-LFVTHYP-PVCELEKNYSHQVGNYH 813 (918)
T ss_dssp HHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEE-EEECSCG-GGGGHHHHTTTTEEEEE
T ss_pred hHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeE-EEEeCcH-HHHHHHhhcccceEEEE
Confidence 9999999999998 8999999999999999999999987 56666654334454 4456664 55566665421 34444
Q ss_pred EEE
Q 001293 403 IVY 405 (1106)
Q Consensus 403 iv~ 405 (1106)
+.+
T Consensus 814 ~~~ 816 (918)
T 3thx_B 814 MGF 816 (918)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 182
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.48 E-value=2.1e-15 Score=168.84 Aligned_cols=148 Identities=14% Similarity=0.106 Sum_probs=101.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcc---------cceEEEEcCCCCCCCCCCHHHHH
Q 001293 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---------QRTAAYISQHDNHIGEMTVRETL 247 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E~l 247 (1106)
+|++++|+||||||||||++.|+|.+.|+ +|+|.++|.++..... ++.++|++|++...|.+||+|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 79999999999999999999999999997 8999999998644321 24589999998888889999999
Q ss_pred HHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCCChh
Q 001293 248 AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGG 327 (1106)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 327 (1106)
.++.. .+. +. .+++..|+.+..+ +-++..
T Consensus 178 ~~~~~-~~~---------------d~---------------------------~llDt~G~~~~~~--------~~~~eL 206 (304)
T 1rj9_A 178 QAMKA-RGY---------------DL---------------------------LFVDTAGRLHTKH--------NLMEEL 206 (304)
T ss_dssp HHHHH-HTC---------------SE---------------------------EEECCCCCCTTCH--------HHHHHH
T ss_pred HHHHh-CCC---------------CE---------------------------EEecCCCCCCchH--------HHHHHH
Confidence 87531 100 00 0011123222111 124455
Q ss_pred hhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC
Q 001293 328 QKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP 384 (1106)
Q Consensus 328 qrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~ 384 (1106)
++||++|||+++.+|+.++| .||+.+...+++.++.+....+.|+|+ ++|.
T Consensus 207 s~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~ii-vTh~ 257 (304)
T 1rj9_A 207 KKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVI-VTKL 257 (304)
T ss_dssp HHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEE-EECT
T ss_pred HHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEE-EECC
Confidence 58999999999999994444 455555556666666655434556665 4554
No 183
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.48 E-value=8.3e-16 Score=188.43 Aligned_cols=166 Identities=18% Similarity=0.171 Sum_probs=110.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCC-CCCceeEEEEcCccCC------CCcccceEEEEcCCCCCCCCCCHHHHHHHHHHh
Q 001293 181 TLLLGPPSSGKTTLLLALAGKLDP-TLKVSGTVTYNGHDMD------EFVPQRTAAYISQHDNHIGEMTVRETLAFSARC 253 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~~~-~~~~~G~V~~~G~~~~------~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 253 (1106)
++|+|||||||||||++|+|+..| + +|.|+++|.++. ....++.++|++|+..+++.+||+|++.++...
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~---sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~ 124 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRG---SGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA 124 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC----------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCC---CCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999877 6 899999998742 112356899999999999999999999886432
Q ss_pred cCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCCChhhhHHHH
Q 001293 254 QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT 333 (1106)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvs 333 (1106)
.+... .++| ++++.
T Consensus 125 ~~~~~---------------------------------------------------------------~~~s---~~~i~ 138 (608)
T 3szr_A 125 IAGEG---------------------------------------------------------------MGIS---HELIT 138 (608)
T ss_dssp HHCSS---------------------------------------------------------------SCCC---SCCEE
T ss_pred hcCCc---------------------------------------------------------------cccc---hHHHH
Confidence 11000 0011 11122
Q ss_pred HHHHHhcCCccceeecC------CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChh----H---HHhhc-----CeE
Q 001293 334 TGEMMVGPALALFMDEI------STGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP----E---TYDLF-----DDI 395 (1106)
Q Consensus 334 ia~al~~~p~vllLDEp------tsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~----~---~~~~~-----D~i 395 (1106)
++.+....|+++++||| |+|||+....++.+.++++.....+.+++.++|+.+ + +.+.. ..|
T Consensus 139 l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI 218 (608)
T 3szr_A 139 LEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTI 218 (608)
T ss_dssp EEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEE
T ss_pred HHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceE
Confidence 22222357999999999 999999999999999998765445566666776654 2 22222 457
Q ss_pred EEEcCCeEEEEcChHHHHHH
Q 001293 396 ILLSDGQIVYQGPRELVLEF 415 (1106)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~~ 415 (1106)
+++.++.++..|+.+++.+.
T Consensus 219 ~VlTK~Dlv~~g~~~~~~~~ 238 (608)
T 3szr_A 219 GILTKPDLVDKGTEDKVVDV 238 (608)
T ss_dssp EEEECGGGSSSSSTTCCCCC
T ss_pred EEecchhhcCcccHHHHHHH
Confidence 88899888888876655443
No 184
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.47 E-value=1.6e-15 Score=173.53 Aligned_cols=142 Identities=18% Similarity=0.129 Sum_probs=93.9
Q ss_pred eeee-EEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCee----eeE-EEEcCccCCcccccceEEEEccCCCCCCCCC
Q 001293 884 LNGV-SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----TGN-ITISGYPKKQETFARISGYCEQNDIHSPFVT 957 (1106)
Q Consensus 884 L~~i-s~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~----~G~-i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~t 957 (1106)
|+.+ .+.+++|++++|+|+||||||||++.|++.....+. .|. |+|++.+.. ..+.+++++|...+.+. +
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-H
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-H
Confidence 4554 578999999999999999999999999985411111 356 888876531 11223444443322111 2
Q ss_pred HHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHh-------cCCCeEE
Q 001293 958 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV-------ANPSIIF 1030 (1106)
Q Consensus 958 v~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~-------~~p~ill 1030 (1106)
+.+|+.+ .+. .-|.+|+|++.++++++ .+|++|+
T Consensus 196 v~~ni~~-------------------------------~~~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 196 VLKHIYV-------------------------------ARA--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HGGGEEE-------------------------------EEC--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HhhCEEE-------------------------------Eec--------CChHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 2222111 000 02567888888888888 6899999
Q ss_pred EeCCCCCCCHHH------------HHHHHHHHHHHHh-CCCeEEEEecCcc
Q 001293 1031 MDEPTSGLDARA------------AAIVMRTVRNTVD-TGRTVVCTIHQPS 1068 (1106)
Q Consensus 1031 LDEPtsgLD~~~------------~~~i~~~l~~~~~-~g~tvi~~~H~~~ 1068 (1106)
+||||+++|+.. ...+++.|+++++ .|+|||+|+|...
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 999999999852 3556666777654 5899999999865
No 185
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.47 E-value=1e-14 Score=181.44 Aligned_cols=132 Identities=17% Similarity=0.169 Sum_probs=95.6
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC-CCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCH
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-PTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1106)
..+++|+|+. |++++|+|||||||||||++|+|... +. .|.+. + . .+..++|++| +++.+|+
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v----p--a--~~~~i~~v~~---i~~~~~~ 628 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV----P--A--EEAHLPLFDG---IYTRIGA 628 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB----S--S--SEEEECCCSE---EEEECCC
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee----e--h--hccceeeHHH---hhccCCH
Confidence 4688999999 99999999999999999999999863 33 45431 1 0 1245777776 4555566
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccC
Q 001293 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1106)
.||+. .+
T Consensus 629 ~d~l~-------------------------------------------------------------------------~g 635 (765)
T 1ewq_A 629 SDDLA-------------------------------------------------------------------------GG 635 (765)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHH-------------------------------------------------------------------------hc
Confidence 55542 14
Q ss_pred CChhhhHHHHHHHHH--hcCCccceeecC---CCCCCHHHH-HHHHHHHHHHHHhcCCeEEEEEecChhHHHhhc
Q 001293 324 ISGGQKKRVTTGEMM--VGPALALFMDEI---STGLDSSTT-FQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (1106)
Q Consensus 324 LSGGqrqRvsia~al--~~~p~vllLDEp---tsgLD~~~~-~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~ 392 (1106)
+|+|+++++.+++++ +.+|+++||||| |++||..+. ..+++.|++ .+.++++ ++|+. +..+++
T Consensus 636 ~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~-~TH~~-~l~~~~ 704 (765)
T 1ewq_A 636 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLF-ATHYF-ELTALG 704 (765)
T ss_dssp CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEE-ECCCH-HHHTCC
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEE-EeCCH-HHHHhh
Confidence 899999999999999 999999999999 999998875 568887765 3445554 56664 344444
No 186
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.46 E-value=1e-13 Score=154.06 Aligned_cols=151 Identities=21% Similarity=0.190 Sum_probs=100.9
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhc
Q 001293 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (1106)
Q Consensus 890 ~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r 969 (1106)
.+++|++++|+|+||||||||++.|++... .|.+ +.|.+... ...+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~-~~g~~~~~---~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPD-LLEVGELP---TGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCC-TTCCCCCC---CCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCC-cCCCccCC---CccEEEEECCCCH---HHHHHHHH---HHH
Confidence 488999999999999999999999997322 2333 22433211 2346677655421 01111111 111
Q ss_pred CCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC--CCCHHH---HH
Q 001293 970 LSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS--GLDARA---AA 1044 (1106)
Q Consensus 970 ~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPts--gLD~~~---~~ 1044 (1106)
.+... ...+++++.+.+.+..+.. +..||+||++++ ++++.+|++|++||||+ ++|... ..
T Consensus 92 --~~~~~----~~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 --AHLSA----EERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp --TTSCH----HHHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred --hhcCh----hhhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 11221 2245677888877665443 456999998765 68888999999999999 999744 47
Q ss_pred HHHHHHHHHH-hCCCeEEEEecCcc
Q 001293 1045 IVMRTVRNTV-DTGRTVVCTIHQPS 1068 (1106)
Q Consensus 1045 ~i~~~l~~~~-~~g~tvi~~~H~~~ 1068 (1106)
.+++.|++++ +.|+|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 8888898886 45999999999865
No 187
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.46 E-value=9.4e-14 Score=149.13 Aligned_cols=166 Identities=14% Similarity=0.136 Sum_probs=103.8
Q ss_pred EeeeeEE-EEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcccccc---eEEEEccCCCCCCCCCH
Q 001293 883 LLNGVSG-AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR---ISGYCEQNDIHSPFVTI 958 (1106)
Q Consensus 883 ~L~~is~-~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~---~~gyv~q~~~~~~~~tv 958 (1106)
.|+++.+ .+++|++++|+|+||||||||++.|++... ...|.+.+.+.+.......+ ..++.+|.....
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 83 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK----- 83 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-----
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-----
Confidence 5777775 799999999999999999999999997432 12344444333221110000 001111100000
Q ss_pred HHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--eEEEeCCCC
Q 001293 959 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPTS 1036 (1106)
Q Consensus 959 ~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~--illLDEPts 1036 (1106)
++ . .++......+ ... . ....|.++.++...+.+...+|+ +|++||||+
T Consensus 84 --~~------~------------~~~~~~~~~~-~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 134 (235)
T 2w0m_A 84 --KL------I------------IIDALMKEKE-DQW---S-----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSA 134 (235)
T ss_dssp --TE------E------------EEECCC-----CTT---B-----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGG
T ss_pred --CE------E------------EEeccccccC-cee---e-----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchH
Confidence 00 0 0000000000 000 0 12359999998888888888999 999999998
Q ss_pred CC--CHHHHHHHHHHHHHHH-hCCCeEEEEecCcc-------HHHHHhcCeEEEEecC
Q 001293 1037 GL--DARAAAIVMRTVRNTV-DTGRTVVCTIHQPS-------IDIFEAFDELFLMKRG 1084 (1106)
Q Consensus 1037 gL--D~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~-------~~~~~~~D~v~~l~~G 1084 (1106)
++ |+.....+++.|++++ +.|+|||+++|+.. ..+...||++++|++.
T Consensus 135 ~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 135 LFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 87 9988899999999986 45999999999972 1367789999999864
No 188
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.45 E-value=4.7e-15 Score=159.33 Aligned_cols=171 Identities=16% Similarity=0.090 Sum_probs=106.4
Q ss_pred ceeeeceeE-EEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCH
Q 001293 165 LTILKDVSG-VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~-~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1106)
.+.|+++.+ -+++|++++|+||||||||||++.|++...+. .|.|.|.+.+. +.
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~~----------------------~~ 63 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTEE----------------------SR 63 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESSS----------------------CH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEccc----------------------CH
Confidence 446888885 89999999999999999999999999887654 56666544221 11
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccC
Q 001293 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1106)
.+........ +... +.... . ...+ .+.....++ ... ....
T Consensus 64 ~~~~~~~~~~-~~~~--~~~~~----~-~~~~-----------------------~~~~~~~~~-----~~~----~~~~ 103 (235)
T 2w0m_A 64 DSIIRQAKQF-NWDF--EEYIE----K-KLII-----------------------IDALMKEKE-----DQW----SLVN 103 (235)
T ss_dssp HHHHHHHHHT-TCCC--GGGBT----T-TEEE-----------------------EECCC---------CTT----BCSS
T ss_pred HHHHHHHHHh-cchH--HHHhh----C-CEEE-----------------------EeccccccC-----cee----eecC
Confidence 1111100000 0000 00000 0 0000 000000000 000 1123
Q ss_pred CChhhhHHHHHHHHHhcCCc--cceeecCCCCC--CHHHHHHHHHHHHHHHHhcCCeEEEEEecCh--------hHHHhh
Q 001293 324 ISGGQKKRVTTGEMMVGPAL--ALFMDEISTGL--DSSTTFQIVNCLRQNIHINSGTAVISLLQPA--------PETYDL 391 (1106)
Q Consensus 324 LSGGqrqRvsia~al~~~p~--vllLDEptsgL--D~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~--------~~~~~~ 391 (1106)
.|.+|.++...+.+...+|+ ++++||||+++ |+.....+++.|+++++.. +.+|+.++|.. +.+.++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~-~~~vi~~~h~~~~~~~~~~~~~~~~ 182 (235)
T 2w0m_A 104 LTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKW-NFTIYATSQYAITTSQAFGFGVEHV 182 (235)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHT-TEEEEEEEC-----------CHHHH
T ss_pred CCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhC-CCeEEEEeccCcccccccccchhee
Confidence 58999988888877778999 99999999888 9999999999999887644 45555567776 558889
Q ss_pred cCeEEEEcCC
Q 001293 392 FDDIILLSDG 401 (1106)
Q Consensus 392 ~D~iilL~~G 401 (1106)
||+|++|...
T Consensus 183 ~d~vi~l~~~ 192 (235)
T 2w0m_A 183 ADGIIRFRRM 192 (235)
T ss_dssp CSEEEEEEEE
T ss_pred eeEEEEEEEE
Confidence 9999999764
No 189
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.44 E-value=2e-14 Score=164.26 Aligned_cols=126 Identities=20% Similarity=0.275 Sum_probs=83.8
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCee-eeEEEEcCccCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhh
Q 001293 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-TGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWL 968 (1106)
Q Consensus 890 ~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~-~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~ 968 (1106)
...+|++++|+||||||||||+++|+|... +. .|.|...+-+... ......++++|....
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~--~~~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~---------------- 179 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLN--NTKYHHILTIEDPIEF-VHESKKCLVNQREVH---------------- 179 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHH--HHCCCEEEEEESSCCS-CCCCSSSEEEEEEBT----------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhccc--CCCCcEEEEccCcHHh-hhhccccceeeeeec----------------
Confidence 578999999999999999999999999643 22 3444332222211 011111222222110
Q ss_pred cCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q 001293 969 RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1048 (1106)
Q Consensus 969 r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~ 1048 (1106)
...++..+ +||++|..+|++|++|||| |.++...+.
T Consensus 180 ------------------------------------~~~~~~~~----~La~aL~~~PdvillDEp~---d~e~~~~~~- 215 (356)
T 3jvv_A 180 ------------------------------------RDTLGFSE----ALRSALREDPDIILVGEMR---DLETIRLAL- 215 (356)
T ss_dssp ------------------------------------TTBSCHHH----HHHHHTTSCCSEEEESCCC---SHHHHHHHH-
T ss_pred ------------------------------------cccCCHHH----HHHHHhhhCcCEEecCCCC---CHHHHHHHH-
Confidence 01123333 9999999999999999999 766654443
Q ss_pred HHHHHHhCCCeEEEEecCccHHHHHhcCeEEEEec
Q 001293 1049 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1106)
Q Consensus 1049 ~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1083 (1106)
+.+.+|.|||+|+|+.+. . +.+||++.|..
T Consensus 216 ---~~~~~G~~vl~t~H~~~~-~-~~~dRli~l~~ 245 (356)
T 3jvv_A 216 ---TAAETGHLVFGTLHTTSA-A-KTIDRVVDVFP 245 (356)
T ss_dssp ---HHHHTTCEEEEEESCSSH-H-HHHHHHHHTSC
T ss_pred ---HHHhcCCEEEEEEccChH-H-HHHHHHhhhcC
Confidence 345679999999999873 3 78899888754
No 190
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.42 E-value=2.8e-15 Score=156.27 Aligned_cols=159 Identities=18% Similarity=0.150 Sum_probs=100.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCc-ccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCC
Q 001293 894 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 972 (1106)
Q Consensus 894 G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~ 972 (1106)
|++++|+|+||||||||+++|+|... ..| |.++|++..+ ...++.+||++|+.. ... +++ +.+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~---~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g~~---~~l---~~~~~-- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK---SSG-VPVDGFYTEEVRQGGRRIGFDVVTLS--GTR---GPL---SRVGL-- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH---HTT-CCCEEEECCEEETTSSEEEEEEEETT--SCE---EEE---EECCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc---cCC-EEEcCEecchhHhhhceEEEEEEecc--cce---ehh---hcccc--
Confidence 78999999999999999999999643 246 7788876543 235678999999751 111 111 00000
Q ss_pred CCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHH-HHHH---HHhcCCCeEEEeC--CCCCCCHHHHHHH
Q 001293 973 EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRL-TIAV---ELVANPSIIFMDE--PTSGLDARAAAIV 1046 (1106)
Q Consensus 973 ~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl-~iA~---aL~~~p~illLDE--PtsgLD~~~~~~i 1046 (1106)
..+ ....+..++..+ ..+|+|||+++ ++++ |++.+|+|||||| |+..+|....+.+
T Consensus 67 ~~~-----------------~~~~~~~v~~~~-~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l 128 (189)
T 2i3b_A 67 EPP-----------------PGKRECRVGQYV-VDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAV 128 (189)
T ss_dssp CCC-----------------SSSCCEESSSSE-ECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHH
T ss_pred cCC-----------------ccccccccceEE-EcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHH
Confidence 000 000111233322 35899999888 4454 5789999999999 8999999876666
Q ss_pred HHHHHHHHhCCCeEEE----EecCccHHHHHhcCeEEEEecCCEEEEecC
Q 001293 1047 MRTVRNTVDTGRTVVC----TIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1106)
Q Consensus 1047 ~~~l~~~~~~g~tvi~----~~H~~~~~~~~~~D~v~~l~~Gg~~~~~g~ 1092 (1106)
.++++ ...++|+ ++|+.+. ...|++..+. +|+++...+
T Consensus 129 ~~~l~----~~~~~ilgti~vsh~~~~---~~vd~i~~~~-~~~i~~~~~ 170 (189)
T 2i3b_A 129 RQTLS----TPGTIILGTIPVPKGKPL---ALVEEIRNRK-DVKVFNVTK 170 (189)
T ss_dssp HHHHH----CSSCCEEEECCCCCSSCC---TTHHHHHTTC-CSEEEECCS
T ss_pred HHHHh----CCCcEEEEEeecCCCCch---HHHHHHeecC-CcEEEEeCh
Confidence 55554 3445543 3398641 2346665554 467776554
No 191
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.41 E-value=3.5e-14 Score=177.78 Aligned_cols=156 Identities=13% Similarity=0.063 Sum_probs=100.9
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHH
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
..+++|+|+. ++|++++|+|||||||||||++|+|..... . . |..+.. ....++++.| ++..+++.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~-q-~------G~~vpa--~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA-Y-I------GSYVPA--QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH-T-T------TCCBSS--SEEEECCCCE---EEEEEC--
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH-h-c------Ccccch--hcccceeHHH---HHhhCCHH
Confidence 4689999999 999999999999999999999999974221 0 1 211111 0134556555 45556666
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCC
Q 001293 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1106)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1106)
+++..+. ..+
T Consensus 661 d~l~~~~----------------------------------------------------------------------stf 670 (800)
T 1wb9_A 661 DDLASGR----------------------------------------------------------------------STF 670 (800)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHhhh----------------------------------------------------------------------hhh
Confidence 6553211 135
Q ss_pred ChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHH-HHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001293 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI-VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1106)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i-~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~i 403 (1106)
|+++++ ++.+...+.+|+++|||||++|+|+.....+ +..++.+....+.++++ ++|+. +...++|++..+.+|++
T Consensus 671 ~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~-~TH~~-el~~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 671 MVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLF-ATHYF-ELTQLPEKMEGVANVHL 747 (800)
T ss_dssp HHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEE-ECSCG-GGGGHHHHSTTEEEEEE
T ss_pred hHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEE-EeCCH-HHHHHhhhhhceEEEEE
Confidence 666654 4444456899999999999999999877775 56777665423445444 56665 45568998877788887
Q ss_pred EEEc
Q 001293 404 VYQG 407 (1106)
Q Consensus 404 v~~G 407 (1106)
.+..
T Consensus 748 ~~~~ 751 (800)
T 1wb9_A 748 DALE 751 (800)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 192
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.39 E-value=6.3e-13 Score=136.11 Aligned_cols=85 Identities=11% Similarity=0.168 Sum_probs=70.1
Q ss_pred CCCCCHHHHHHHHHHHHHhc----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeEEE
Q 001293 1005 VSGLSTEQRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1080 (1106)
Q Consensus 1005 ~~~LSgGqrqrl~iA~aL~~----~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~ 1080 (1106)
+..||||||||++||++|+. +|+++||||||+|||+.+...+.+.|+++.. +.++|+++|+. .+.+.+|+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEE
Confidence 35699999999999999974 4699999999999999999999999999864 57899999996 46788999986
Q ss_pred Ee--cCCEEEEecC
Q 001293 1081 MK--RGGQEIYVGP 1092 (1106)
Q Consensus 1081 l~--~Gg~~~~~g~ 1092 (1106)
+. +|...++...
T Consensus 139 v~~~~g~s~~~~~~ 152 (173)
T 3kta_B 139 VSMRDGVSKVVSLS 152 (173)
T ss_dssp EEEETTEEEEEECC
T ss_pred EEecCCEEEEEEEE
Confidence 54 4444444433
No 193
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.39 E-value=3e-13 Score=150.20 Aligned_cols=153 Identities=13% Similarity=0.141 Sum_probs=98.2
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHHHHHHHHHHh
Q 001293 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARC 253 (1106)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 253 (1106)
-+++|++++|+||||||||||++.+++.+. .|.+. .|.+.. ....+.|+..++. . +.+. .++
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~~-~g~~~~---~~~~v~~~~~e~~------~-~~~~--~r~ 87 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPDL-LEVGEL---PTGPVIYLPAEDP------P-TAIH--HRL 87 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCCT-TCCCCC---CCCCEEEEESSSC------H-HHHH--HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCCc-CCCccC---CCccEEEEECCCC------H-HHHH--HHH
Confidence 489999999999999999999999998654 45553 344321 1346788877652 1 1111 000
Q ss_pred cCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCCChhhhHHHH
Q 001293 254 QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT 333 (1106)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvs 333 (1106)
...+. .+ .....+.+++.+++.+..+. .+..||+||++++
T Consensus 88 ~~~g~---------------~~-------------------~~~~~~~~~~~l~l~~~~~~-----~~~~ls~g~~~~i- 127 (279)
T 1nlf_A 88 HALGA---------------HL-------------------SAEERQAVADGLLIQPLIGS-----LPNIMAPEWFDGL- 127 (279)
T ss_dssp HHHHT---------------TS-------------------CHHHHHHHHHHEEECCCTTS-----CCCTTSHHHHHHH-
T ss_pred HHHHh---------------hc-------------------ChhhhhhccCceEEeecCCC-----CcccCCHHHHHHH-
Confidence 00000 00 00123445677777655443 3456999998876
Q ss_pred HHHHHhcCCccceeecCCC--CCCHHHH---HHHHHHHHHHHHhcCCeEEEEEecChhH
Q 001293 334 TGEMMVGPALALFMDEIST--GLDSSTT---FQIVNCLRQNIHINSGTAVISLLQPAPE 387 (1106)
Q Consensus 334 ia~al~~~p~vllLDEpts--gLD~~~~---~~i~~~l~~~~~~~~~t~vi~i~q~~~~ 387 (1106)
++++.+|+++++||||+ ++|.... .++++.|+++++..+.|+| .++|....
T Consensus 128 --~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi-~i~H~~~~ 183 (279)
T 1nlf_A 128 --KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIV-FLHHASKG 183 (279)
T ss_dssp --HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEE-EEEEC---
T ss_pred --HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEE-EEecCCCc
Confidence 57888999999999999 9998544 7888889888765555544 46666544
No 194
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.39 E-value=4.1e-13 Score=162.16 Aligned_cols=76 Identities=22% Similarity=0.312 Sum_probs=70.3
Q ss_pred CCC-CHHHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeEEEEe
Q 001293 1006 SGL-STEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1106)
Q Consensus 1006 ~~L-SgGqrqrl~iA~aL~~~p--~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1082 (1106)
..| |||||||++||++|+.+| ++|||||||+|||+.++..|.+.|+++.+ |+|||++||++. +...||++++|+
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~~ 471 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKVE 471 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEe
Confidence 457 999999999999999999 99999999999999999999999999987 899999999975 556799999997
Q ss_pred cC
Q 001293 1083 RG 1084 (1106)
Q Consensus 1083 ~G 1084 (1106)
++
T Consensus 472 ~~ 473 (517)
T 4ad8_A 472 KQ 473 (517)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 195
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.37 E-value=2.2e-14 Score=167.06 Aligned_cols=164 Identities=13% Similarity=0.101 Sum_probs=93.4
Q ss_pred eeeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccC
Q 001293 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1106)
Q Consensus 855 ~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1106)
.+.++++++.|. +..+++|+||.| +|+|+||||||||+++|+|........|.+.+++.+
T Consensus 11 ~l~~~~l~~~y~-------------~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~- 70 (418)
T 2qag_C 11 YVGFANLPNQVY-------------RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK- 70 (418)
T ss_dssp ----CCCCCCTT-------------TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC------
T ss_pred cEEEEecceeEC-------------CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc-
Confidence 477888877663 235899999987 999999999999999999965421112333332211
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 001293 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1106)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrq 1014 (1106)
....+.++|++|.+...+.+||.|++.++..... ... ...+.+.+ +. .++.+++|
T Consensus 71 --t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~------~~~---~~~i~~~i------~~--------~~~~~l~q 125 (418)
T 2qag_C 71 --TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN------SNC---WQPVIDYI------DS--------KFEDYLNA 125 (418)
T ss_dssp --CCEEEEEECC------CEEEEEEECC--------------------CHHHHHHH------HH--------HHHHHTTT
T ss_pred --ceeeeeEEEEEecCCcccceeeeechhhhhhccc------hhh---HHHHHHHH------HH--------HHHHHHHH
Confidence 1123568999998877778888888877643210 000 01111111 11 25667778
Q ss_pred HHHHHHHHhcCCC---eEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCeEEEEecCcc
Q 001293 1015 RLTIAVELVANPS---IIFMDEPT-SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1068 (1106)
Q Consensus 1015 rl~iA~aL~~~p~---illLDEPt-sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1068 (1106)
|++|||+++.+|+ +|++|||| .|||+... +.++.+. .+.+||+++|..+
T Consensus 126 r~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~~v~iIlVinK~D 178 (418)
T 2qag_C 126 ESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-EKVNIIPLIAKAD 178 (418)
T ss_dssp SCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT-TTSEEEEEEESTT
T ss_pred HHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh-ccCcEEEEEEccc
Confidence 9999999999999 99999999 69998874 3334443 3678888877543
No 196
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.37 E-value=3.9e-14 Score=173.60 Aligned_cols=136 Identities=14% Similarity=0.178 Sum_probs=93.0
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCC------cccccceEEEEccCCCCCCCCCHHHHHHHHHhhcC
Q 001293 897 TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK------QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (1106)
Q Consensus 897 ~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~------~~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~ 970 (1106)
+||+|+|||||||||++|+|...+ ...|.|.++|.++. ...+++.+||++|++.+++.+||+|++.+......
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~ 126 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA 126 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999998642 14899999997731 13466789999999999898999999886532211
Q ss_pred CCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC------CCCCCHHHHH
Q 001293 971 SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP------TSGLDARAAA 1044 (1106)
Q Consensus 971 ~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEP------tsgLD~~~~~ 1044 (1106)
... .++| ++++.++++...+|+++++||| |+|||+..+.
T Consensus 127 ~~~--------------------------------~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~ 171 (608)
T 3szr_A 127 GEG--------------------------------MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGY 171 (608)
T ss_dssp CSS--------------------------------SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHH
T ss_pred CCc--------------------------------cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHH
Confidence 000 0011 1122222333458999999999 9999999999
Q ss_pred HHHHHHHHHHhC--CCeEEEEecCcc
Q 001293 1045 IVMRTVRNTVDT--GRTVVCTIHQPS 1068 (1106)
Q Consensus 1045 ~i~~~l~~~~~~--g~tvi~~~H~~~ 1068 (1106)
.+.+.++++..+ +.++++++|+.+
T Consensus 172 ~i~~li~~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 172 KIKTLIKKYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp HHHHHHHHHTTSSSCCEEEEEESSSC
T ss_pred HHHHHHHHHHhcCCCCceEEEeccch
Confidence 999999997543 567788999876
No 197
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.33 E-value=6.7e-14 Score=149.42 Aligned_cols=149 Identities=18% Similarity=0.234 Sum_probs=96.6
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCH----HHHHH
Q 001293 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV----RETLA 248 (1106)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV----~E~l~ 248 (1106)
-..++|++++|+||||||||||+++|+|.++|+ ..+|.|.+++.+.... .++.++|++|++..|+.+|+ .|++.
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 357899999999999999999999999999863 3489999998765432 23568899996533332222 11111
Q ss_pred HHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCCChhh
Q 001293 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (1106)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1106)
+ .|+ +.|-.
T Consensus 89 ~------------------------------------------------------------------~~~-----~yg~~ 97 (219)
T 1s96_A 89 V------------------------------------------------------------------FGN-----YYGTS 97 (219)
T ss_dssp E------------------------------------------------------------------TTE-----EEEEE
T ss_pred H------------------------------------------------------------------Hhc-----cCCCC
Confidence 0 011 11111
Q ss_pred hHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEEcC
Q 001293 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (1106)
Q Consensus 329 rqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv~~G~ 408 (1106)
+++ ++.++..++++||| ||+.++.++.+.+. .+.+|+.++|+..++.+ |+ +..| .++
T Consensus 98 ~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~------~~~tI~i~th~~~~l~~---Rl--~~rG----~~~ 154 (219)
T 1s96_A 98 REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP------HARSIFILPPSKIELDR---RL--RGRG----QDS 154 (219)
T ss_dssp HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT------TCEEEEEECSSHHHHHH---HH--HTTS----CSC
T ss_pred HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc------CCEEEEEECCCHHHHHH---HH--HHcC----CCC
Confidence 222 34445567999999 99999999988775 24556656777666554 43 6777 678
Q ss_pred hHHHHHHHH
Q 001293 409 RELVLEFFA 417 (1106)
Q Consensus 409 ~~~~~~~f~ 417 (1106)
.+++...+.
T Consensus 155 ~e~i~~rl~ 163 (219)
T 1s96_A 155 EEVIAKRMA 163 (219)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887766543
No 198
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.33 E-value=1.8e-13 Score=144.71 Aligned_cols=180 Identities=14% Similarity=0.090 Sum_probs=93.3
Q ss_pred eeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC---CCeeeeEEEEcCc
Q 001293 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGY 932 (1106)
Q Consensus 856 l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~---~~~~~G~i~i~g~ 932 (1106)
+.++|+++.|.. .++++ +.+.+|.+++|+|+||||||||++.|+|... ..+..|.+.+.+.
T Consensus 4 l~~~~~~~~~~~--------------~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~ 67 (210)
T 1pui_A 4 LNYQQTHFVMSA--------------PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL 67 (210)
T ss_dssp -------CEEEE--------------SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE
T ss_pred hhhhhhhheeec--------------CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE
Confidence 567788777641 25666 7899999999999999999999999999651 0123344332110
Q ss_pred c-C-CcccccceEEEEccCCCCCCCCC---HHHHHHHHHhh-cC--------CCCCChHHHHHHHHHHHHHcCCcccc-c
Q 001293 933 P-K-KQETFARISGYCEQNDIHSPFVT---IYESLLFSAWL-RL--------SPEVDSETRKMFIDEVMELVELNPLR-Q 997 (1106)
Q Consensus 933 ~-~-~~~~~~~~~gyv~q~~~~~~~~t---v~e~l~~~~~~-r~--------~~~~~~~~~~~~v~~~l~~~~l~~~~-~ 997 (1106)
- . ....+....|+..+. .+.-. .+..+...... +. .........+..+.+.++..++..+. .
T Consensus 68 ~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~ 144 (210)
T 1pui_A 68 FEVADGKRLVDLPGYGYAE---VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLL 144 (210)
T ss_dssp EEEETTEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEecCCEEEEECcCCcccc---cCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 0 0 000000001111000 00000 11111111100 00 00000111222344555666654321 1
Q ss_pred cccCCCCCCCCCHHHHHH-HHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCe
Q 001293 998 SLVGLPGVSGLSTEQRKR-LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059 (1106)
Q Consensus 998 ~~~g~~g~~~LSgGqrqr-l~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~t 1059 (1106)
.. ...+|+||||| +..+++++.+|.++++|||||++|......+++.|.++..+|.|
T Consensus 145 nK-----~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 145 TK-----ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp EC-----GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred ec-----ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 11 24589999999 89999999999999999999999999999999999988765544
No 199
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.33 E-value=4.5e-14 Score=150.76 Aligned_cols=133 Identities=17% Similarity=0.146 Sum_probs=84.2
Q ss_pred eEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcccccceEEEEccCCCCCCCCCHHHHHHHHH
Q 001293 887 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (1106)
Q Consensus 887 is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~ 966 (1106)
-.-..++|++++|+||||||||||+++|+|...+....|.|.+.+.+... ..++.++|++|++..++.+++..
T Consensus 9 ~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~------ 81 (219)
T 1s96_A 9 HHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRD------ 81 (219)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTT------
T ss_pred ccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcC------
Confidence 34567899999999999999999999999976421367899998876543 23445788888643222111100
Q ss_pred hhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH
Q 001293 967 WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046 (1106)
Q Consensus 967 ~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i 1046 (1106)
+.++.+. +.... .+.| ++. +.+++..++++||| ||+.++..+
T Consensus 82 ------------------~f~E~~~---~~~~~------yg~~---~~~---v~~~l~~G~illLD-----LD~~~~~~i 123 (219)
T 1s96_A 82 ------------------AFLEHAE---VFGNY------YGTS---REA---IEQVLATGVDVFLD-----IDWQGAQQI 123 (219)
T ss_dssp ------------------CEEEEEE---ETTEE------EEEE---HHH---HHHHHTTTCEEEEE-----CCHHHHHHH
T ss_pred ------------------HHHHHHH---HHhcc------CCCC---HHH---HHHHHhcCCeEEEE-----ECHHHHHHH
Confidence 0000000 00000 0111 222 34556678999999 999999999
Q ss_pred HHHHHHHHhCCCeEEEEecCcc
Q 001293 1047 MRTVRNTVDTGRTVVCTIHQPS 1068 (1106)
Q Consensus 1047 ~~~l~~~~~~g~tvi~~~H~~~ 1068 (1106)
++.+. ++.||++++|+++
T Consensus 124 ~~~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 124 RQKMP----HARSIFILPPSKI 141 (219)
T ss_dssp HHHCT----TCEEEEEECSSHH
T ss_pred HHHcc----CCEEEEEECCCHH
Confidence 98876 5899999999975
No 200
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.33 E-value=1.8e-13 Score=159.28 Aligned_cols=149 Identities=11% Similarity=0.075 Sum_probs=85.3
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHH
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
+.+++|+|+.| +|+||||||||||+++|+|...+... .|.+.+++.+ ....+.++|+.|++..++.+||.
T Consensus 24 ~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~---t~~~~~i~~v~q~~~~~~~Ltv~ 93 (418)
T 2qag_C 24 KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK---TVQVEQSKVLIKEGGVQLLLTIV 93 (418)
T ss_dssp TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC--------CCEEEEEECC------CEEEEEE
T ss_pred EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc---ceeeeeEEEEEecCCcccceeee
Confidence 45999999998 99999999999999999999865311 2222222111 11124689999988888889999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCC
Q 001293 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1106)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1106)
+|+.|+...... +. ...+.+++ + ..+
T Consensus 94 Dt~g~~~~~~~~----~~--------------------------------~~~i~~~i-~-----------------~~~ 119 (418)
T 2qag_C 94 DTPGFGDAVDNS----NC--------------------------------WQPVIDYI-D-----------------SKF 119 (418)
T ss_dssp ECC-----------------------------------------------CHHHHHHH-H-----------------HHH
T ss_pred echhhhhhccch----hh--------------------------------HHHHHHHH-H-----------------HHH
Confidence 999876421100 00 00011111 0 135
Q ss_pred ChhhhHHHHHHHHHhcCCc---cceeecCC-CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEec
Q 001293 325 SGGQKKRVTTGEMMVGPAL---ALFMDEIS-TGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383 (1106)
Q Consensus 325 SGGqrqRvsia~al~~~p~---vllLDEpt-sgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q 383 (1106)
+.+++||++|||+++.+|+ +|++|||| ++||+... .++ +.+. .+.++|+++++
T Consensus 120 ~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~-~~l---k~L~--~~v~iIlVinK 176 (418)
T 2qag_C 120 EDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI-EFM---KRLH--EKVNIIPLIAK 176 (418)
T ss_dssp HHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH-HHH---HHHT--TTSEEEEEEES
T ss_pred HHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH-HHH---HHHh--ccCcEEEEEEc
Confidence 6677889999999999999 99999999 69998763 333 3332 24555555544
No 201
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.32 E-value=7.7e-12 Score=127.98 Aligned_cols=91 Identities=22% Similarity=0.281 Sum_probs=69.7
Q ss_pred cccCCChhhhHHHHHHHHHh----cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001293 320 MIRGISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1106)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~----~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1106)
.+..||||||||++||++++ .+|++++|||||+|||+.+...+.+.|+++.. +++ +|.++|+ ..+.+.+|++
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~-~ivith~-~~~~~~ad~i 136 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQ-FIVITLR-DVMMANADKI 136 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSE-EEEECSC-HHHHTTCSEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCE-EEEEEec-HHHHHhCCEE
Confidence 35679999999999999996 56799999999999999999999999988642 344 4445555 4678899999
Q ss_pred EEE--cCCeE-EEEcChHHHHH
Q 001293 396 ILL--SDGQI-VYQGPRELVLE 414 (1106)
Q Consensus 396 ilL--~~G~i-v~~G~~~~~~~ 414 (1106)
+.+ .+|.. +.....++..+
T Consensus 137 ~~v~~~~g~s~~~~~~~~~~~~ 158 (173)
T 3kta_B 137 IGVSMRDGVSKVVSLSLEKAMK 158 (173)
T ss_dssp EEEEEETTEEEEEECCHHHHHH
T ss_pred EEEEecCCEEEEEEEEcHHHHH
Confidence 866 46754 44455554433
No 202
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.32 E-value=1.9e-13 Score=156.27 Aligned_cols=128 Identities=19% Similarity=0.231 Sum_probs=83.8
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHHHHHHHHHHh
Q 001293 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARC 253 (1106)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 253 (1106)
...+|++++|+|||||||||||++|+|.++++ ..|.|...+.++ ++......+++.|.....
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~-e~~~~~~~~~v~q~~~~~--------------- 180 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPI-EFVHESKKCLVNQREVHR--------------- 180 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSC-CSCCCCSSSEEEEEEBTT---------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcH-Hhhhhccccceeeeeecc---------------
Confidence 67899999999999999999999999999874 136665444332 222222233444421100
Q ss_pred cCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCCChhhhHHHH
Q 001293 254 QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT 333 (1106)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvs 333 (1106)
..++-.+ +
T Consensus 181 --------------------------------------------------------------------~~~~~~~----~ 188 (356)
T 3jvv_A 181 --------------------------------------------------------------------DTLGFSE----A 188 (356)
T ss_dssp --------------------------------------------------------------------TBSCHHH----H
T ss_pred --------------------------------------------------------------------ccCCHHH----H
Confidence 0112111 8
Q ss_pred HHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001293 334 TGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1106)
Q Consensus 334 ia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G 401 (1106)
||++|..+|+++++|||| |..+...+.+. +. .+.+ |++++|....+ ..+||++.|..|
T Consensus 189 La~aL~~~PdvillDEp~---d~e~~~~~~~~----~~-~G~~-vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 189 LRSALREDPDIILVGEMR---DLETIRLALTA----AE-TGHL-VFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHTTSCCSEEEESCCC---SHHHHHHHHHH----HH-TTCE-EEEEESCSSHH-HHHHHHHHTSCH
T ss_pred HHHHhhhCcCEEecCCCC---CHHHHHHHHHH----Hh-cCCE-EEEEEccChHH-HHHHHHhhhcCc
Confidence 999999999999999999 66664444332 32 4555 45556665555 889999998654
No 203
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.31 E-value=3.2e-12 Score=136.07 Aligned_cols=153 Identities=18% Similarity=0.165 Sum_probs=97.1
Q ss_pred EeeeeE-EEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcccccceEEEEccCCCCCCCCCHHHH
Q 001293 883 LLNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 961 (1106)
Q Consensus 883 ~L~~is-~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~tv~e~ 961 (1106)
.|+++. +.+++|++++|+|+||||||||++.|++ ..+ .+.+.++. +.. .+. +.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~---~~v~~i~~-----------------~~~----~~~-~~ 61 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LSG---KKVAYVDT-----------------EGG----FSP-ER 61 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HHC---SEEEEEES-----------------SCC----CCH-HH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-HcC---CcEEEEEC-----------------CCC----CCH-HH
Confidence 355555 3799999999999999999999999998 221 22333332 211 111 11
Q ss_pred HHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHH--HHHHHHHHHHHhcC-CCeEEEeCCCCCC
Q 001293 962 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE--QRKRLTIAVELVAN-PSIIFMDEPTSGL 1038 (1106)
Q Consensus 962 l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgG--qrqrl~iA~aL~~~-p~illLDEPtsgL 1038 (1106)
+. ..... ...+. +++++.+.+ ..++++ +++++..+++++.+ |++|++||||+.+
T Consensus 62 ~~--~~~~~-~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 62 LV--QMAET-RGLNP-------EEALSRFIL-------------FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp HH--HHHHT-TTCCH-------HHHHHHEEE-------------ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred HH--HHHHh-cCCCh-------HHHhhcEEE-------------EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence 11 00000 01111 122232211 113333 46789999999986 9999999999999
Q ss_pred CHHH--------HHHHHHHHHHHHhC-CCeEEEEecCcc------------HHHHHhcCeEEEEecC
Q 001293 1039 DARA--------AAIVMRTVRNTVDT-GRTVVCTIHQPS------------IDIFEAFDELFLMKRG 1084 (1106)
Q Consensus 1039 D~~~--------~~~i~~~l~~~~~~-g~tvi~~~H~~~------------~~~~~~~D~v~~l~~G 1084 (1106)
|+.. ...+++.|++++++ |+|||+++|... ..+...+|.+++|++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 119 RAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9733 24456667777643 899999999754 1356789999999865
No 204
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.31 E-value=4.6e-15 Score=154.78 Aligned_cols=169 Identities=11% Similarity=0.058 Sum_probs=107.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHHHHHHHHHHhcCCC
Q 001293 178 GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVG 257 (1106)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~ 257 (1106)
|++++|+||||||||||+++|++ +. +|.+.++|.++... ...++++|.+...+.+|+++++.+.++...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~---~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QL---DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFL-- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HS---SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH--
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---cc---CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHH--
Confidence 68999999999999999999997 33 68999998765332 234677776544555688888876542210
Q ss_pred chhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccc---ccccCC--ChhhhHHH
Q 001293 258 TRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD---EMIRGI--SGGQKKRV 332 (1106)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~---~~~~~L--SGGqrqRv 332 (1106)
. . +-....+...+. +..+.+ |+|++|++
T Consensus 71 ----------~-~------------------------------------~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~ 103 (189)
T 2bdt_A 71 ----------L-A------------------------------------QNDVVLDYIAFPDEAEALAQTVQAKVDDVEI 103 (189)
T ss_dssp ----------H-T------------------------------------TCEEEEESCCCHHHHHHHHHHHHHHCSSEEE
T ss_pred ----------h-c------------------------------------CCcEEEeeccCHHHHHHHHHHHHhcccCCCe
Confidence 0 0 000000000000 011224 88999898
Q ss_pred HHHH------HHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC-hhHHHhhcCeEEEEcCCeEEE
Q 001293 333 TTGE------MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP-APETYDLFDDIILLSDGQIVY 405 (1106)
Q Consensus 333 sia~------al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~-~~~~~~~~D~iilL~~G~iv~ 405 (1106)
.++. +++.+|+...+|+ +||+..... ++.++.+.. .+.+ ++..+|. ..++.+.+|+|+ .+|+++.
T Consensus 104 ~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~-~~~~-ii~tsh~~~~~~e~~~~~i~--~~g~~~~ 175 (189)
T 2bdt_A 104 RFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI-DERY-FYNTSHLQPTNLNDIVKNLK--TNPRFIF 175 (189)
T ss_dssp EEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC-CTTS-EEECSSSCGGGHHHHHHHHH--HCGGGSC
T ss_pred EEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC-CccE-EEeCCCCChhhHHHHHHHHh--hCCcEEE
Confidence 8877 8999999988884 899988777 777776532 3344 4445555 678899999999 9999999
Q ss_pred EcChHHH
Q 001293 406 QGPRELV 412 (1106)
Q Consensus 406 ~G~~~~~ 412 (1106)
+|+++-+
T Consensus 176 ~~~~~~~ 182 (189)
T 2bdt_A 176 CMAGDPL 182 (189)
T ss_dssp C------
T ss_pred eecCCch
Confidence 9988654
No 205
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.30 E-value=1.7e-15 Score=175.08 Aligned_cols=170 Identities=15% Similarity=0.032 Sum_probs=97.9
Q ss_pred eeeceeEEEeC--CeEEEEEcCCCCcHHHHHHHHhCCCCCCCCce----eEEEEcCccCCCCcccceEEEEcCCCCCCCC
Q 001293 167 ILKDVSGVIKP--GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVS----GTVTYNGHDMDEFVPQRTAAYISQHDNHIGE 240 (1106)
Q Consensus 167 iL~~vs~~i~~--G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~----G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 240 (1106)
+.+.|++.|++ |+.++|+||||||||||+++|+|+++|+ + |+|.+++..-. .+..+..
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~~-------------~~~~~~~ 220 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLGG-------------DEQAMQY 220 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSSS-------------CTTSSCT
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcCC-------------CcccCCh
Confidence 45789999999 9999999999999999999999999987 7 77766421000 0001111
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccc
Q 001293 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1106)
... +++.+...- .. ........++ .++.....++ .
T Consensus 221 ~~~-~~I~~~~q~------~~----~~~~t~~~nl-----------------------------~~~~~~~~~~-----~ 255 (365)
T 1lw7_A 221 SDY-PQMALGHQR------YI----DYAVRHSHKI-----------------------------AFIDTDFITT-----Q 255 (365)
T ss_dssp TTH-HHHHHHHHH------HH----HHHHHHCSSE-----------------------------EEESSCHHHH-----H
T ss_pred hHH-HHHHHHHHH------HH----HHHHhccCCE-----------------------------EEEeCCchHH-----H
Confidence 122 334332110 00 0000000000 0000000011 1
Q ss_pred ccCCChhhhHHHHHHHHHh-cCCccceeec---CC------CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHh
Q 001293 321 IRGISGGQKKRVTTGEMMV-GPALALFMDE---IS------TGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390 (1106)
Q Consensus 321 ~~~LSGGqrqRvsia~al~-~~p~vllLDE---pt------sgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~ 390 (1106)
...+|+|+++|..+++++. .+|+++|||| |+ .++|...+..+.+.|+++.+..+.++++ +.|+ .+..+
T Consensus 256 ~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ili-lde~-~~~~r 333 (365)
T 1lw7_A 256 AFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIE-IESP-SYLDR 333 (365)
T ss_dssp HHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEE-EECS-SHHHH
T ss_pred HHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEE-eCCC-CHHHH
Confidence 1236677788888888775 5899999999 65 5899999999999998775533455555 4555 35556
Q ss_pred hcCeEEEEc
Q 001293 391 LFDDIILLS 399 (1106)
Q Consensus 391 ~~D~iilL~ 399 (1106)
++|.+.+++
T Consensus 334 ~~~~i~~i~ 342 (365)
T 1lw7_A 334 YNQVKAVIE 342 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655553
No 206
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.29 E-value=6.3e-14 Score=148.20 Aligned_cols=67 Identities=10% Similarity=-0.010 Sum_probs=53.0
Q ss_pred HHHHHcCCccccccccccccccCCChhhhHH-HHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHH
Q 001293 301 YYLKVLGLDVCADTMVGDEMIRGISGGQKKR-VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 371 (1106)
Q Consensus 301 ~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqR-vsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~ 371 (1106)
..++..+++.. .++++ ...+|+||||| +..+++++.+|..+++|||||++|......+++.|.+...
T Consensus 131 ~~~~~~~~~~~---~v~nK-~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 131 EWAVDSNIAVL---VLLTK-ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHHTTCCEE---EEEEC-GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHHcCCCeE---EEEec-ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 34555666532 22332 33599999999 8999999999999999999999999999999999987653
No 207
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.28 E-value=3.5e-13 Score=140.48 Aligned_cols=141 Identities=18% Similarity=0.144 Sum_probs=89.0
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCc-ccceEEEEcCCCCCCCCCCHHHHHHHHHH
Q 001293 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYISQHDNHIGEMTVRETLAFSAR 252 (1106)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~ 252 (1106)
.+++|++++|+||||||||||+++|+|. ++ .|.|.++|.++.... ..+.++|++|+.. +.+||.|++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 3679999999999999999999999998 44 799999997653221 1234677777543 45788999877542
Q ss_pred hcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCCChhhhHHH
Q 001293 253 CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV 332 (1106)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRv 332 (1106)
... ...... + ++.++..+++..... . +..+..+|+|++||+
T Consensus 78 ~~~------------~~~~~~-~-----------------------~~~~~~~~~l~~~~~--~-~~~~~~ls~~~~~~v 118 (191)
T 1zp6_A 78 RYA------------KEGYFV-I-----------------------LDGVVRPDWLPAFTA--L-ARPLHYIVLRTTAAE 118 (191)
T ss_dssp HHH------------HTSCEE-E-----------------------ECSCCCTTTTHHHHT--T-CSCEEEEEEECCHHH
T ss_pred HHh------------ccCCeE-E-----------------------EeccCcHHHHHHHHh--c-CCCeEEEEecCCHHH
Confidence 110 000000 0 000000011111110 0 111235999999999
Q ss_pred HHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHH
Q 001293 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 368 (1106)
Q Consensus 333 sia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~ 368 (1106)
.++|++..+|+++ +|+.....+.+.++.
T Consensus 119 ~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~ 146 (191)
T 1zp6_A 119 AIERCLDRGGDSL--------SDPLVVADLHSQFAD 146 (191)
T ss_dssp HHHHHHTTCTTSC--------CCHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCcc--------CCHHHHHHHHHHHhc
Confidence 9999999999877 587776666666544
No 208
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.28 E-value=1.6e-13 Score=158.81 Aligned_cols=171 Identities=16% Similarity=0.125 Sum_probs=108.9
Q ss_pred eeeeEEEEeCCeE--EEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcccccceEEEEccCCCCCCCCCHHHH
Q 001293 884 LNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 961 (1106)
Q Consensus 884 L~~is~~v~~G~~--~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~tv~e~ 961 (1106)
|++||+++++|++ +||+|+||||||||+++|+|..- .|.. +.... ....++.++|++|++.+.+.+||.|+
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~-~~~~~--~~~~~~~i~~v~Q~~~l~~~ltv~D~ 102 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEP-ATHTQ--PGVQLQSNTYDLQESNVRLKLTIVST 102 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------CC--SSCEEEEEEEEEEC--CEEEEEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCc-CCCCC--ccceEeeEEEEeecCccccccchhhh
Confidence 9999999999999 99999999999999999999642 1211 11111 11234578999999888778899888
Q ss_pred HHHHHhhcCCCCCChH----HHHHHHHHHHHHc-CCc----cccccc----cC--CCCCCCCCHHHHHHHHHHHHHhcCC
Q 001293 962 LLFSAWLRLSPEVDSE----TRKMFIDEVMELV-ELN----PLRQSL----VG--LPGVSGLSTEQRKRLTIAVELVANP 1026 (1106)
Q Consensus 962 l~~~~~~r~~~~~~~~----~~~~~v~~~l~~~-~l~----~~~~~~----~g--~~g~~~LSgGqrqrl~iA~aL~~~p 1026 (1106)
+.|+.... ...... ......++.++.. ++. ...+.. +. .|...+|+-.+ +.|+++|..++
T Consensus 103 ~~~g~~~~--~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~ 177 (427)
T 2qag_B 103 VGFGDQIN--KEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKV 177 (427)
T ss_dssp ECCCC-CC--HHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCS
T ss_pred hhhhhccc--cchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCC
Confidence 87653210 000000 1122334445543 332 112221 10 12223577666 78999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCeEEEEecC
Q 001293 1027 SIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQ 1066 (1106)
Q Consensus 1027 ~illLDEPtsgLD~~~~~~i~~~l~~-~~~~g~tvi~~~H~ 1066 (1106)
+||++||||..|.+.....+.+.+++ +...|..|+.++.+
T Consensus 178 ~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 178 NIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 99999999999999988888888887 76779999888764
No 209
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.28 E-value=5e-14 Score=144.24 Aligned_cols=138 Identities=18% Similarity=0.125 Sum_probs=85.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCc------cc-ceEE----EEcCCCCCCCCCCHHHHH
Q 001293 179 RLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQ-RTAA----YISQHDNHIGEMTVRETL 247 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~-~~~~----yv~Q~d~~~~~lTV~E~l 247 (1106)
++++|+|+||||||||+++|+|.+++.....|.|.++|+++.+.. .+ +.++ +++|+..++ +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 579999999999999999999999875334799999998854432 12 2455 788865544 000
Q ss_pred HHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCCChh
Q 001293 248 AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGG 327 (1106)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 327 (1106)
+ .. +. .+ ..+.+++. .|+ .+||.|++ +||||
T Consensus 77 -------~--~~-----~~-----~a------------------------~l~~~i~~-~l~-g~dt~i~E----glSgG 107 (171)
T 2f1r_A 77 -------V--SE-----EE-----GN------------------------DLDWIYER-YLS-DYDLVITE----GFSKA 107 (171)
T ss_dssp -------C--CH-----HH-----HT------------------------CHHHHHHH-HTT-TCSEEEEE----SCGGG
T ss_pred -------C--Ch-----hh-----hh------------------------CHHHHHHh-hCC-CCCEEEEC----CcCCC
Confidence 0 00 00 00 01223333 133 57899997 59999
Q ss_pred hhHHHHHHHHHhcCCccce-------eecCCCC---CCHHHHHHHHHHHHHHHH
Q 001293 328 QKKRVTTGEMMVGPALALF-------MDEISTG---LDSSTTFQIVNCLRQNIH 371 (1106)
Q Consensus 328 qrqRvsia~al~~~p~vll-------LDEptsg---LD~~~~~~i~~~l~~~~~ 371 (1106)
||||++|||+++++|++.- -|.|..+ +|......+.+.+.+...
T Consensus 108 q~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~~ 161 (171)
T 2f1r_A 108 GKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLLR 161 (171)
T ss_dssp CCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHHT
T ss_pred CCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHHHh
Confidence 9999999999999998842 2444322 344455677777765544
No 210
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.28 E-value=1.2e-13 Score=139.60 Aligned_cols=78 Identities=18% Similarity=0.077 Sum_probs=66.1
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHH
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
+.+++++|+.+++|++++|+||||||||||+++|+|.+ |+ +|+|.++|.++......+ .|++|+..++ .+||.
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCC--Ccceeccccc-cCCcH
Confidence 35899999999999999999999999999999999999 77 899999998764211111 2899987777 89999
Q ss_pred HHHHH
Q 001293 245 ETLAF 249 (1106)
Q Consensus 245 E~l~f 249 (1106)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99965
No 211
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.27 E-value=5.3e-13 Score=153.97 Aligned_cols=129 Identities=19% Similarity=0.284 Sum_probs=92.2
Q ss_pred EeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCee-eeEEEEcCccCCcccccceEEEEccCCCCCCCCCHHHH
Q 001293 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-TGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 961 (1106)
Q Consensus 883 ~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~-~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~tv~e~ 961 (1106)
+|++++ +++|++++|+||||||||||+++|+|... +. .|.|.+.+.+... ..+..++|++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~~~e~-~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEY-VFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEESSCCS-CCCCSSSEEEEEE-----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecccHhh-hhccCceEEEeee-----------
Confidence 567766 88999999999999999999999999643 23 6888776655431 2344566777631
Q ss_pred HHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 001293 962 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041 (1106)
Q Consensus 962 l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~ 1041 (1106)
+++. ...+ +.+|+.+|..+|++|++|||+ |++
T Consensus 191 ----------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e 222 (372)
T 2ewv_A 191 ----------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLE 222 (372)
T ss_dssp ----------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHH
T ss_pred ----------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHH
Confidence 1111 1124 469999999999999999999 776
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeEEEE
Q 001293 1042 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1106)
Q Consensus 1042 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l 1081 (1106)
+.. ..++. +..|.+|++|+|+.+ +.+.+|+++.|
T Consensus 223 ~~~---~~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l 256 (372)
T 2ewv_A 223 TVE---TALRA-AETGHLVFGTLHTNT--AIDTIHRIVDI 256 (372)
T ss_dssp HHH---HHHHH-HTTTCEEEECCCCCS--HHHHHHHHHHT
T ss_pred HHH---HHHHH-HhcCCEEEEEECcch--HHHHHHHHHHh
Confidence 643 34443 356899999999965 55667776433
No 212
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.27 E-value=1.2e-12 Score=150.42 Aligned_cols=136 Identities=13% Similarity=0.101 Sum_probs=93.8
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCc-ccceEEEEc-CCCCC--CCCCC
Q 001293 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYIS-QHDNH--IGEMT 242 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~-Q~d~~--~~~lT 242 (1106)
+++++|+.+++|++++|+||||||||||+++|+|+++|+ +|.|+++|..--... .++.++|++ |++.. ++..|
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t 240 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVT 240 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC----------CC
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCccccccccccC
Confidence 459999999999999999999999999999999999998 999999985311111 346788998 65422 13344
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccc
Q 001293 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1106)
+++
T Consensus 241 ~~~----------------------------------------------------------------------------- 243 (361)
T 2gza_A 241 AAT----------------------------------------------------------------------------- 243 (361)
T ss_dssp HHH-----------------------------------------------------------------------------
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 444
Q ss_pred CCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 001293 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1106)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~ 402 (1106)
.|+.++..+|+.+++||+.. ..+.+.|+.+. ....+.+.++|.. .....+||+..|..|.
T Consensus 244 ----------~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~-~g~~~~l~t~H~~--~~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 244 ----------LLRSCLRMKPTRILLAELRG-------GEAYDFINVAA-SGHGGSITSCHAG--SCELTFERLALMVLQN 303 (361)
T ss_dssp ----------HHHHHTTSCCSEEEESCCCS-------THHHHHHHHHH-TTCCSCEEEEECS--SHHHHHHHHHHHHTTS
T ss_pred ----------HHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHh-cCCCeEEEEECCC--CHHHHHHHHHHHHhcc
Confidence 44445556788999999986 23444555432 2344556655543 4778899999887764
No 213
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.27 E-value=4.2e-13 Score=154.34 Aligned_cols=138 Identities=17% Similarity=0.146 Sum_probs=97.3
Q ss_pred EeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCc-ccccceEEEEc-cCCCCCCCCCHHH
Q 001293 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFARISGYCE-QNDIHSPFVTIYE 960 (1106)
Q Consensus 883 ~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~-q~~~~~~~~tv~e 960 (1106)
+++++|+.+++|++++|+||||||||||+++|+|... +..|.|.++|..... ...++.++|++ |++..
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~--~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP--FDQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC--TTSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC--CCceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 4599999999999999999999999999999999765 357999999854211 12456788887 54321
Q ss_pred HHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 001293 961 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040 (1106)
Q Consensus 961 ~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~ 1040 (1106)
+++++..++-.|+.++..+|+.+++|||+.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 011222356677777888999999999986
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeEEEEecCC
Q 001293 1041 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1106)
Q Consensus 1041 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg 1085 (1106)
..+.+.++.+.....|++.++|..+ ....+||+..|..++
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 2345566665443467899999965 456677777666543
No 214
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.26 E-value=1.7e-14 Score=150.46 Aligned_cols=154 Identities=15% Similarity=0.025 Sum_probs=93.9
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcc-cccceEEEEccCCCCCCCCCHHHHHHHHHhh
Q 001293 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWL 968 (1106)
Q Consensus 890 ~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~ 968 (1106)
.+++|++++|+|+||||||||+++|+|.. ..|.|.++|.+.... ...+.++|++|+.. +..++.+++.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~----~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP----GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS----SSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc----CCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 37799999999999999999999999973 257899988653211 11233566666533 346788888765422
Q ss_pred cCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q 001293 969 RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1048 (1106)
Q Consensus 969 r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~ 1048 (1106)
....... ..++.+++..++..+... +.+ +..+|+|++|+++++|++.++|+++ +|+...+.+++
T Consensus 79 ~~~~~~~-----~~~~~~~~~~~l~~~~~~--~~~-~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 79 YAKEGYF-----VILDGVVRPDWLPAFTAL--ARP-LHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp HHHTSCE-----EEECSCCCTTTTHHHHTT--CSC-EEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred HhccCCe-----EEEeccCcHHHHHHHHhc--CCC-eEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 1100000 000001111111111100 111 2359999999999999999999876 68888888888
Q ss_pred HHHHHHhCCCeEEEEec
Q 001293 1049 TVRNTVDTGRTVVCTIH 1065 (1106)
Q Consensus 1049 ~l~~~~~~g~tvi~~~H 1065 (1106)
.++.+...+..+|.++|
T Consensus 143 ~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 143 QFADLGAFEHHVLPVSG 159 (191)
T ss_dssp HTTCCGGGGGGEEECTT
T ss_pred HHhccCcccccEEECCC
Confidence 77665433334555544
No 215
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.25 E-value=7.2e-12 Score=133.29 Aligned_cols=77 Identities=12% Similarity=0.012 Sum_probs=57.1
Q ss_pred CChhh--hHHHHHHHHHhcC-CccceeecCCCCCCHHH--------HHHHHHHHHHHHHhcCCeEEEEEecChh------
Q 001293 324 ISGGQ--KKRVTTGEMMVGP-ALALFMDEISTGLDSST--------TFQIVNCLRQNIHINSGTAVISLLQPAP------ 386 (1106)
Q Consensus 324 LSGGq--rqRvsia~al~~~-p~vllLDEptsgLD~~~--------~~~i~~~l~~~~~~~~~t~vi~i~q~~~------ 386 (1106)
.|+++ ++++..+++++.+ |+++++||||+++|... ...+++.|+++++..+.++|+ ++|...
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~-~~h~~~~~~~~~ 163 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIV-INQVHFDSRTEM 163 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEE-EECSSSSCTTSS
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEE-EeeEEEcCCCCc
Confidence 45554 5678888899986 99999999999999743 245666788877655666655 555443
Q ss_pred -------HHHhhcCeEEEEcCC
Q 001293 387 -------ETYDLFDDIILLSDG 401 (1106)
Q Consensus 387 -------~~~~~~D~iilL~~G 401 (1106)
.+...+|.|++|...
T Consensus 164 ~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 164 TKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCSCCCHHHHHTSSEEEEEEEC
T ss_pred cccCCCcceeecCcEEEEEEEe
Confidence 567899999999754
No 216
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.25 E-value=1e-13 Score=150.96 Aligned_cols=157 Identities=18% Similarity=0.153 Sum_probs=97.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh---CCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHHHHHHHHHH-
Q 001293 177 PGRLTLLLGPPSSGKTTLLLALA---GKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSAR- 252 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~---G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~- 252 (1106)
++++++|+||||||||||+++|+ |...++ +|+|.++|.+... ...+.+.+++|+..+++..|+.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999 998877 8999888754321 112345566777778888899999987542
Q ss_pred -------hcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCCC
Q 001293 253 -------CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1106)
Q Consensus 253 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1106)
+.+..... .+....... ..++--+ + .. .. .+..+ . .+.++.+..||
T Consensus 102 ~~~~~~il~g~~~~~---~~~~~l~~~--~~~~~vi--~-----L~-~~----~~~~l-----~-----r~~~r~~~~lS 154 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTL---GQAEALDKI--CEVDLVI--S-----LN-IP----FETLK-----D-----RLSRRWIHPPS 154 (246)
T ss_dssp CTTSCEEEESCCCSH---HHHHHHHTT--CCCCEEE--E-----EE-CC----HHHHH-----H-----HHHTEEEETTT
T ss_pred cCCCeEEEECCCCCH---HHHHHHHhh--cCCCEEE--E-----EE-CC----HHHHH-----H-----HHHcCCCcCCC
Confidence 11111100 000000000 0000000 0 00 00 00000 0 11123345699
Q ss_pred hhhhHHHHHHHHH-hcCCccceee----cCCCCCCHHHHHHHHHHHHHHHH
Q 001293 326 GGQKKRVTTGEMM-VGPALALFMD----EISTGLDSSTTFQIVNCLRQNIH 371 (1106)
Q Consensus 326 GGqrqRvsia~al-~~~p~vllLD----EptsgLD~~~~~~i~~~l~~~~~ 371 (1106)
| |+ +++ +.+|++++|| |||++||..+...+.+.++++..
T Consensus 155 g----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 155 G----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp T----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred C----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 8 55 677 9999999999 99999999999999998887643
No 217
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.25 E-value=1.1e-15 Score=159.53 Aligned_cols=170 Identities=15% Similarity=0.189 Sum_probs=105.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCC
Q 001293 894 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE 973 (1106)
Q Consensus 894 G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~ 973 (1106)
|++++|+||||||||||+++|++. ..|.+.++|.+.... ...|+++|.....+..++++++.+.+.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~-----~~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ-----LDNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH-----SSSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc-----cCCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHhcC
Confidence 689999999999999999999972 346788887543211 124566665433334577777765432211000
Q ss_pred CChHHHHHHHHHHHHHcCCccccccccCCCCCCCC--CHHHHHHHHHHH------HHhcCCCeEEEeCCCCCCCHHHHHH
Q 001293 974 VDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL--STEQRKRLTIAV------ELVANPSIIFMDEPTSGLDARAAAI 1045 (1106)
Q Consensus 974 ~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~L--SgGqrqrl~iA~------aL~~~p~illLDEPtsgLD~~~~~~ 1045 (1106)
. ..+++.+......+. ...+ |+|++|++.++. +++.+|+...+|+ +||+.....
T Consensus 74 ~---------~~ild~~~~~~~~~~------~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~ 135 (189)
T 2bdt_A 74 N---------DVVLDYIAFPDEAEA------LAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL 135 (189)
T ss_dssp C---------EEEEESCCCHHHHHH------HHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH
T ss_pred C---------cEEEeeccCHHHHHH------HHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH
Confidence 0 000000000000000 0123 778877887777 8888888888884 899988888
Q ss_pred HHHHHHHHHhCCCeEEEEecC-ccHHHHHhcCeEEEEecCCEEEEecCCC
Q 001293 1046 VMRTVRNTVDTGRTVVCTIHQ-PSIDIFEAFDELFLMKRGGQEIYVGPLG 1094 (1106)
Q Consensus 1046 i~~~l~~~~~~g~tvi~~~H~-~~~~~~~~~D~v~~l~~Gg~~~~~g~~g 1094 (1106)
++.++.+...+.+||.++|. ++ ++.+.||+|+ +.|+++..|+..
T Consensus 136 -~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~---~~g~~~~~~~~~ 180 (189)
T 2bdt_A 136 -VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK---TNPRFIFCMAGD 180 (189)
T ss_dssp -HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH---HCGGGSCC----
T ss_pred -HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh---hCCcEEEeecCC
Confidence 88888876567899999998 76 5888899998 567888888764
No 218
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.19 E-value=1.8e-12 Score=150.10 Aligned_cols=161 Identities=14% Similarity=0.112 Sum_probs=98.5
Q ss_pred eeceeEEEeCCeE--EEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHHH
Q 001293 168 LKDVSGVIKPGRL--TLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1106)
Q Consensus 168 L~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1106)
|+|||+.+++|++ ++|+||||||||||+++|+|..- .|..... .......+.++|++|++.+++.+||.|
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~~---~~~~~~~~~i~~v~Q~~~l~~~ltv~D 101 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPATH---TQPGVQLQSNTYDLQESNVRLKLTIVS 101 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------------CCSSCEEEEEEEEEEC--CEEEEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCCC---CCccceEeeEEEEeecCccccccchhh
Confidence 9999999999999 99999999999999999999841 2321110 001112357899999988888999999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHc-CCc----ccccccc----
Q 001293 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLD----VCADTMV---- 316 (1106)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~----~~~dt~v---- 316 (1106)
|+.|+.... .......+. .+ .....+.+|... ++. ...|+.|
T Consensus 102 ~~~~g~~~~----~~~~~~~i~---------------~~----------i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v 152 (427)
T 2qag_B 102 TVGFGDQIN----KEDSYKPIV---------------EF----------IDAQFEAYLQEELKIRRVLHTYHDSRIHVCL 152 (427)
T ss_dssp EECCCC-CC----HHHHSHHHH---------------HH----------HHHHHHHHHHHC--CCCCCCCSCC--CCEEE
T ss_pred hhhhhhccc----cchhhhHHH---------------HH----------HHHHHHHHHHHHHhhhhhhcccccccccEEE
Confidence 998764211 000000000 00 011223333333 433 2223321
Q ss_pred c--cccccCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHH
Q 001293 317 G--DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 368 (1106)
Q Consensus 317 g--~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~ 368 (1106)
. .....+|+-.+ +.|+++|..+++|+++|+|+..|.+.....+.+.+++
T Consensus 153 ~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~ 203 (427)
T 2qag_B 153 YFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITS 203 (427)
T ss_dssp EEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHH
Confidence 1 01113566665 7899999999999999999999999888888888876
No 219
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.19 E-value=1.2e-11 Score=133.75 Aligned_cols=151 Identities=19% Similarity=0.216 Sum_probs=84.1
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhCC--CCC---CeeeeEEEEcCccCCcccccceEEEEccCCCCCCCCCHHHHHH
Q 001293 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTG---GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 963 (1106)
Q Consensus 889 ~~v~~G~~~al~G~nGaGKSTLl~~L~g~--~~~---~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~tv~e~l~ 963 (1106)
+-+++|++++|+||||||||||++.|++. ... +...|.+.+++.... ....-..
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~---------------------~~~~~~~ 77 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTF---------------------RPERLLA 77 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC---------------------CHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCc---------------------CHHHHHH
Confidence 45899999999999999999999999982 221 112456666654310 0100000
Q ss_pred HHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH-HHHHHHHHh--cCCCeEEEeCCCCCCCH
Q 001293 964 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK-RLTIAVELV--ANPSIIFMDEPTSGLDA 1040 (1106)
Q Consensus 964 ~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrq-rl~iA~aL~--~~p~illLDEPtsgLD~ 1040 (1106)
....+ .... +++++.+.+ . ...+..+.. .+.-+.+++ .+|++|++|||++.+|+
T Consensus 78 ~~~~~----g~~~-------~~~~~~~~~---~---------~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 78 VAERY----GLSG-------SDVLDNVAY---A---------RAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHT----TCCH-------HHHHHTEEE---E---------ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHc----CCCH-------HHHhhCeEE---E---------ecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 00000 0111 112221110 0 124555433 233333444 47999999999999997
Q ss_pred H-------H-----HHHHHHHHHHHHh-CCCeEEEEecCccHHHHH-------------------hcCeEEEEecC
Q 001293 1041 R-------A-----AAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFE-------------------AFDELFLMKRG 1084 (1106)
Q Consensus 1041 ~-------~-----~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~-------------------~~D~v~~l~~G 1084 (1106)
. + ...+++.++++++ .|+|||+++|... +... .+|.+++|++|
T Consensus 135 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~-~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 135 DYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA-QVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--------------------------CCTTCEEEEEEEC
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee-cCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 5 3 3445556666654 4999999999654 2222 68999999875
No 220
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.18 E-value=5.4e-15 Score=167.34 Aligned_cols=162 Identities=15% Similarity=0.134 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCC------CeeeeEEEEcCccCCcc------------------cccceEEEE---c
Q 001293 895 VLTALMGVSGAGKTTLMDVLAGRKTG------GYITGNITISGYPKKQE------------------TFARISGYC---E 947 (1106)
Q Consensus 895 ~~~al~G~nGaGKSTLl~~L~g~~~~------~~~~G~i~i~g~~~~~~------------------~~~~~~gyv---~ 947 (1106)
++++|+|+||||||||++.|.|...+ .+..|+|.|||.++... .+.+.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 58999999999999999999986521 13578899988765321 123334555 4
Q ss_pred cCCCCCCCCCHHHHHHHHH--hh-cCC-CCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHh
Q 001293 948 QNDIHSPFVTIYESLLFSA--WL-RLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV 1023 (1106)
Q Consensus 948 q~~~~~~~~tv~e~l~~~~--~~-r~~-~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~ 1023 (1106)
|+..+.+..++.|+..++. .+ +.. .+ ........++.++..+++.++.+.. .++|+||+||+..+++++
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~-~~~~~~~~l~~~l~~vd~~~~~~~~------~~ls~g~~Q~~~ad~ill 157 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSH-EVLCQRYLLDGVIALVDAVHADEQM------NQFTIAQSQVGYADRILL 157 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHS-HHHHHHEEEEEEEEEEETTTHHHHH------HHCHHHHHHHHTCSEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcC-ccccCeEEECCEEEEEEHHHHHHHH------hhchHHHHHHHhCCEEEE
Confidence 5544444555555543320 00 000 00 0000000011122333333333332 158999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcC
Q 001293 1024 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1076 (1106)
Q Consensus 1024 ~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D 1076 (1106)
.+|+++ ||| ..+.+.++++. .+.||++++|++. +....+|
T Consensus 158 ~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 158 TKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp ECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC-CGGGGSC
T ss_pred ECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC-CHHHHhC
Confidence 999987 999 67788888874 5899999999764 3444443
No 221
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.18 E-value=7.2e-14 Score=161.34 Aligned_cols=166 Identities=8% Similarity=0.013 Sum_probs=95.1
Q ss_pred eeeeEEEEeC--CeEEEEEcCCCCcHHHHHHHHhCCCCCCeee----eEEEEcCccCCcccccceEEEEccCCCCCCCCC
Q 001293 884 LNGVSGAFRP--GVLTALMGVSGAGKTTLMDVLAGRKTGGYIT----GNITISGYPKKQETFARISGYCEQNDIHSPFVT 957 (1106)
Q Consensus 884 L~~is~~v~~--G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~----G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~t 957 (1106)
.+.|++.|++ |++++|+|+||||||||+++|+|... +.. |.|.+++.... .+.......
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~--~~~~~e~G~i~i~~~~~~-------------~~~~~~~~~ 222 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN--TTSAWEYGREFVFEKLGG-------------DEQAMQYSD 222 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT--CEEECCTTHHHHHHSSSS-------------CTTSSCTTT
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC--CCcchhhHHHHHHhhcCC-------------CcccCChhH
Confidence 3568888999 99999999999999999999999765 345 66655321000 000001111
Q ss_pred HHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCC--ccccccccCCCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEeC-
Q 001293 958 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL--NPLRQSLVGLPGVSGLSTEQRKRLTIAVELV-ANPSIIFMDE- 1033 (1106)
Q Consensus 958 v~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l--~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~-~~p~illLDE- 1033 (1106)
. +++.+...- ...+...+.+.+.+ .+..+.. ...+|+|++++..+++++. .+|+++||||
T Consensus 223 ~-~~I~~~~q~----------~~~~~~t~~~nl~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~ 286 (365)
T 1lw7_A 223 Y-PQMALGHQR----------YIDYAVRHSHKIAFIDTDFITTQ-----AFCIQYEGKAHPFLDSMIKEYPFDVTILLKN 286 (365)
T ss_dssp H-HHHHHHHHH----------HHHHHHHHCSSEEEESSCHHHHH-----HHHHHHHSCCCHHHHHHHHHSCCSEEEEEEC
T ss_pred H-HHHHHHHHH----------HHHHHHhccCCEEEEeCCchHHH-----HHHHHHcCCCCHHHHHHHhhcCCCEEEECCC
Confidence 1 223322100 00000000000000 0000000 0124666777888888775 5999999999
Q ss_pred --CC------CCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhcCeEEEEe
Q 001293 1034 --PT------SGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1106)
Q Consensus 1034 --Pt------sgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1082 (1106)
|+ .++|+..+..+.+.++++.+ .|.+||+++|. + +....+|++.+++
T Consensus 287 ~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 287 NTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp CCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred CCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 65 58999999999999988754 38899999975 3 3555666665554
No 222
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.17 E-value=3.1e-11 Score=139.51 Aligned_cols=77 Identities=25% Similarity=0.336 Sum_probs=67.4
Q ss_pred CCCCHHHHHHH------HHHHHHhcC-CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeE
Q 001293 1006 SGLSTEQRKRL------TIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1078 (1106)
Q Consensus 1006 ~~LSgGqrqrl------~iA~aL~~~-p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v 1078 (1106)
..||||||||+ ++|++|+.+ |++|||||||+|||+.++..+.+.|+++. .+.+||+|||++. +...+|++
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~~ 355 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADVI 355 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCEE
Confidence 35999999988 567899999 99999999999999999999999999864 3579999999985 56889999
Q ss_pred EEEecCC
Q 001293 1079 FLMKRGG 1085 (1106)
Q Consensus 1079 ~~l~~Gg 1085 (1106)
++|++.|
T Consensus 356 ~~l~k~~ 362 (371)
T 3auy_A 356 INVKKDG 362 (371)
T ss_dssp EEEEESS
T ss_pred EEEEecC
Confidence 9998543
No 223
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.16 E-value=4.8e-12 Score=145.94 Aligned_cols=131 Identities=18% Similarity=0.267 Sum_probs=92.8
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHHHH
Q 001293 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRET 246 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (1106)
+|++++ +++|++++|+|||||||||||++|+|.++++ .+|+|.+.|.++. ...+..++||+|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e-~~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-YVFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCC-SCCCCSSSEEEEEE-----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHh-hhhccCceEEEeee-----------
Confidence 677776 8999999999999999999999999998762 1699988776653 33345667777731
Q ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCCCh
Q 001293 247 LAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISG 326 (1106)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (1106)
+|++ ...+
T Consensus 191 -----------------------------------------------------------~g~~-----------~~~~-- 198 (372)
T 2ewv_A 191 -----------------------------------------------------------VGED-----------TKSF-- 198 (372)
T ss_dssp -----------------------------------------------------------BTTT-----------BSCS--
T ss_pred -----------------------------------------------------------cCCC-----------HHHH--
Confidence 0010 0123
Q ss_pred hhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEc
Q 001293 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1106)
Q Consensus 327 GqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~ 399 (1106)
+.+|+++|..+|+++++|||+ |..+... .++. +. .+.+ |++++|. .++.+.+|+++.|.
T Consensus 199 ----~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~-~~-~g~~-vi~t~H~-~~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 ----ADALRAALREDPDVIFVGEMR---DLETVET---ALRA-AE-TGHL-VFGTLHT-NTAIDTIHRIVDIF 257 (372)
T ss_dssp ----HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHH-HT-TTCE-EEECCCC-CSHHHHHHHHHHTS
T ss_pred ----HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHH-Hh-cCCE-EEEEECc-chHHHHHHHHHHhc
Confidence 468999999999999999999 7766443 3433 22 3444 4555555 44788888887664
No 224
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.16 E-value=1.3e-13 Score=150.22 Aligned_cols=144 Identities=17% Similarity=0.205 Sum_probs=94.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh---CCCCCCeeeeEEEEcCccCCcccccceEEEEccCCCCCCCCCHHHHHHHHHh--
Q 001293 893 PGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAW-- 967 (1106)
Q Consensus 893 ~G~~~al~G~nGaGKSTLl~~L~---g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~-- 967 (1106)
++++++|+|+||||||||+++|+ |... +..|+|.++|.+... ...+.+++++|+..+.+..++.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 8764 567888777654321 122334556677777777889999876431
Q ss_pred ------hcCCCCCChHHHHHHHHHHHHH--cC------------CccccccccCCCCCCCCCHHHHHHHHHHHHH-hcCC
Q 001293 968 ------LRLSPEVDSETRKMFIDEVMEL--VE------------LNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL-VANP 1026 (1106)
Q Consensus 968 ------~r~~~~~~~~~~~~~v~~~l~~--~~------------l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL-~~~p 1026 (1106)
+...+ ... ..++.+.+. ++ +..+.++. +..||| |+ ++| +.+|
T Consensus 103 ~~~~~il~g~~--~~~---~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~-----~~~lSg----rv---~al~~~~P 165 (246)
T 2bbw_A 103 RGQHWLLDGFP--RTL---GQAEALDKICEVDLVISLNIPFETLKDRLSRRW-----IHPPSG----RV---YNLDFNPP 165 (246)
T ss_dssp TTSCEEEESCC--CSH---HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE-----EETTTT----EE---EETTTSCC
T ss_pred CCCeEEEECCC--CCH---HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC-----CcCCCC----Cc---cccccCCC
Confidence 11111 111 112222211 11 11122222 235888 55 677 8999
Q ss_pred CeEEEe----CCCCCCCHHHHHHHHHHHHHHHhC
Q 001293 1027 SIIFMD----EPTSGLDARAAAIVMRTVRNTVDT 1056 (1106)
Q Consensus 1027 ~illLD----EPtsgLD~~~~~~i~~~l~~~~~~ 1056 (1106)
++++|| |||++||..+...+++.++++.+.
T Consensus 166 ~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 166 HVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp SSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred cccccccccccccccCCCCcHHHHHHHHHHHHHh
Confidence 999999 999999999999999988887543
No 225
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.15 E-value=1.5e-11 Score=133.00 Aligned_cols=45 Identities=24% Similarity=0.272 Sum_probs=34.3
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhC--CCCCC--CCceeEEEEcCc
Q 001293 173 GVIKPGRLTLLLGPPSSGKTTLLLALAG--KLDPT--LKVSGTVTYNGH 217 (1106)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G--~~~~~--~~~~G~V~~~G~ 217 (1106)
+-+++|++++|+||||||||||++.|++ .+++. ..-.|.+++++.
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 5689999999999999999999999999 45431 001466666653
No 226
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.14 E-value=4.5e-12 Score=144.03 Aligned_cols=121 Identities=19% Similarity=0.152 Sum_probs=79.7
Q ss_pred eeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC-CCCCceeEEEEc-CccCCCCcccceEEEEcCCCCCCCCCCHHH
Q 001293 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-PTLKVSGTVTYN-GHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1106)
Q Consensus 168 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-~~~~~~G~V~~~-G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1106)
+++++.. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |.+... ...+.++|++|+..++++.||+|
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC--------------CCCEEEECTTSCEEEECHHHHT
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccc-eEEEEEEEECCCCEecCcccHHH
Confidence 5556654 4899999999999999999999999998 87 8999987 755432 23467899999988888889988
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCCC
Q 001293 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1106)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1106)
+ + +.+.. . .+ ......++++.+|+....|... .++|
T Consensus 281 ~---~--l~~l~-~----~e-----------------------------~~~~~~e~l~~~gl~~f~~~~~-----~~lS 316 (358)
T 2rcn_A 281 F---G--LWHLE-P----EQ-----------------------------ITQGFVEFHDYLGHCKYRDCKH-----DADP 316 (358)
T ss_dssp C---C--CCCCC-H----HH-----------------------------HHHTSGGGGGGTTCSSSTTCCS-----SSCT
T ss_pred h---h--hcCCC-H----HH-----------------------------HHHHHHHHHHHcCCchhcCCCc-----ccCC
Confidence 4 1 11100 0 00 0112334566778876666544 4699
Q ss_pred hhhhHHHHHHHHH
Q 001293 326 GGQKKRVTTGEMM 338 (1106)
Q Consensus 326 GGqrqRvsia~al 338 (1106)
||+||++||+++
T Consensus 317 -G~~~r~ala~gl 328 (358)
T 2rcn_A 317 -GCAIREAVENGA 328 (358)
T ss_dssp -TCHHHHHHHHTS
T ss_pred -HHHHHHHHHhcC
Confidence 999999999865
No 227
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.13 E-value=1.1e-11 Score=140.79 Aligned_cols=114 Identities=17% Similarity=0.128 Sum_probs=80.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEc-CccCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCC
Q 001293 893 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS-GYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS 971 (1106)
Q Consensus 893 ~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~-g~~~~~~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~ 971 (1106)
+|++++|+|+||||||||+|+|+|... .+..|+|.++ |.+.. .+..+.++|++|+..+++..+++|+ + +
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~-~~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~---~--l--- 283 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN-EILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREF---G--L--- 283 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS-CCCCC--------------CCCEEEECTTSCEEEECHHHHTC---C--C---
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc-ccccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHh---h--h---
Confidence 789999999999999999999999754 1357899887 65543 2445678999999888777788873 1 1
Q ss_pred CCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHH
Q 001293 972 PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL 1022 (1106)
Q Consensus 972 ~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL 1022 (1106)
...+.++....+.++++.+++.++.+..+ .+|| ||+||++||+++
T Consensus 284 ~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 284 WHLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp CCCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 12344555566778899999988877653 4699 999999999865
No 228
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.13 E-value=7.1e-11 Score=139.29 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=68.9
Q ss_pred CCCCHHHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeEEEE
Q 001293 1006 SGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1106)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~----~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l 1081 (1106)
..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++...|.++|+|||++ ...+.||+++.|
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 459999999999999999 58999999999999999999999999999865678999999995 467889999998
Q ss_pred ec
Q 001293 1082 KR 1083 (1106)
Q Consensus 1082 ~~ 1083 (1106)
..
T Consensus 410 ~~ 411 (430)
T 1w1w_A 410 YR 411 (430)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 229
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.13 E-value=1.3e-13 Score=155.99 Aligned_cols=161 Identities=14% Similarity=0.095 Sum_probs=96.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC--------CCCCCceeEEEEcCccCCCCcc------------------cceEEEE
Q 001293 178 GRLTLLLGPPSSGKTTLLLALAGKL--------DPTLKVSGTVTYNGHDMDEFVP------------------QRTAAYI 231 (1106)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~--------~~~~~~~G~V~~~G~~~~~~~~------------------~~~~~yv 231 (1106)
=++++|+|+|||||||||+.|+|.. .++ .|+|.++|.++..... .+.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l 80 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDL 80 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHH
Confidence 3689999999999999999999986 455 8999999988754321 1335556
Q ss_pred ---cCCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHH---HHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHH
Q 001293 232 ---SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTEL---ARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKV 305 (1106)
Q Consensus 232 ---~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~ 305 (1106)
+|+..+++..+|.||..++... ...... ....... .++.++..
T Consensus 81 ~~~~q~~~~~~~~~v~E~~~l~~p~-------~~~~~~~~~~~~~~~~------------------------~l~~~l~~ 129 (318)
T 1nij_A 81 LDNLDKGNIQFDRLVIECTGMADPG-------PIIQTFFSHEVLCQRY------------------------LLDGVIAL 129 (318)
T ss_dssp HHHHHHTSCCCSEEEEEEETTCCHH-------HHHHHHHHSHHHHHHE------------------------EEEEEEEE
T ss_pred HhHHhcCCCCCCEEEEeCCCCCCHH-------HHHHHHhcCccccCeE------------------------EECCEEEE
Confidence 5655555667777776543100 000000 0000000 00111222
Q ss_pred cCCccccccccccccccCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCh
Q 001293 306 LGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPA 385 (1106)
Q Consensus 306 lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~ 385 (1106)
+++.+..+.. ..+|||||||+..+++++.+|+++ ||| ..+.+.|+++. .+.+ |+.++|..
T Consensus 130 vd~~~~~~~~------~~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~--~~~~-ii~~sh~~ 189 (318)
T 1nij_A 130 VDAVHADEQM------NQFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN--ARAP-VYTVTHGD 189 (318)
T ss_dssp EETTTHHHHH------HHCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC--SSSC-EEECCSSC
T ss_pred EEHHHHHHHH------hhchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC--CCCe-EEEecccC
Confidence 3333332222 148999999999889999999987 998 67777777652 3344 44455544
Q ss_pred hHHHhhc
Q 001293 386 PETYDLF 392 (1106)
Q Consensus 386 ~~~~~~~ 392 (1106)
.+...++
T Consensus 190 ~~~~~l~ 196 (318)
T 1nij_A 190 IDLGLLF 196 (318)
T ss_dssp CCGGGGS
T ss_pred CCHHHHh
Confidence 4444444
No 230
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.11 E-value=4.6e-12 Score=148.39 Aligned_cols=153 Identities=14% Similarity=0.126 Sum_probs=100.9
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcc-------c--ccceEEEEccCCCCCC
Q 001293 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------T--FARISGYCEQNDIHSP 954 (1106)
Q Consensus 884 L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~--~~~~~gyv~q~~~~~~ 954 (1106)
-+++|+.+++|++++|+|+||||||||+++|+|... +..|+|.++|.+..+. . .++.++|++|+....+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 368899999999999999999999999999999654 3468999987765321 1 2456899999987777
Q ss_pred CCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHh-cCCC-eEEEe
Q 001293 955 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV-ANPS-IIFMD 1032 (1106)
Q Consensus 955 ~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~-~~p~-illLD 1032 (1106)
..|+++++.+... +. .+. -+++..|+.+... .+-..-+|++.+++++. ..|. +||..
T Consensus 361 ~~tV~e~l~~a~~-~~-~Dv----------VLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 361 ASVIFDAIQAAKA-RN-IDV----------LIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHH-TT-CSE----------EEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHh-cC-CCE----------EEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 8899999987642 11 000 0111222211111 12223357788888664 4574 55555
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEec
Q 001293 1033 EPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIH 1065 (1106)
Q Consensus 1033 EPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H 1065 (1106)
.||+|.|... .++.+. .-|.|.|++||
T Consensus 420 DattGq~al~------~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 420 DASTGQNAVS------QAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp EGGGTHHHHH------HHHHHHHHTCCSEEEEEC
T ss_pred cCcccHHHHH------HHHHHHhhcCCCEEEEEc
Confidence 5998866542 233332 24789999999
No 231
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.11 E-value=8.6e-12 Score=140.91 Aligned_cols=74 Identities=16% Similarity=0.091 Sum_probs=62.7
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcc-------c--ceEEEEcCCCCCCCCCCHHH
Q 001293 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------Q--RTAAYISQHDNHIGEMTVRE 245 (1106)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~--~~~~yv~Q~d~~~~~lTV~E 245 (1106)
.++|++++|+||||||||||++.|+|.+.|+ +|+|.++|.++..... . ..+.|++|.....|.+||+|
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 4789999999999999999999999999987 8999999988654321 1 23569999988899999999
Q ss_pred HHHHHH
Q 001293 246 TLAFSA 251 (1106)
Q Consensus 246 ~l~f~~ 251 (1106)
|+.++.
T Consensus 203 ~l~~~~ 208 (328)
T 3e70_C 203 AIQHAK 208 (328)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 232
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.11 E-value=1.5e-11 Score=143.96 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=69.4
Q ss_pred eeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCC------c---ccceEEEEcCCCCCC
Q 001293 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF------V---PQRTAAYISQHDNHI 238 (1106)
Q Consensus 168 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~------~---~~~~~~yv~Q~d~~~ 238 (1106)
-+++|+.+++|++++|+||||||||||++.|+|++.++ +|+|.++|.+.... . .++.++|++|+...+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 36899999999999999999999999999999999887 89999987765332 1 135689999998888
Q ss_pred CCCCHHHHHHHHH
Q 001293 239 GEMTVRETLAFSA 251 (1106)
Q Consensus 239 ~~lTV~E~l~f~~ 251 (1106)
+.+||++++.++.
T Consensus 360 p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 360 SASVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8899999999874
No 233
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.10 E-value=5.7e-12 Score=140.15 Aligned_cols=127 Identities=16% Similarity=0.182 Sum_probs=83.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHHHHHHHHHH---
Q 001293 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSAR--- 252 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~--- 252 (1106)
+++.+++|.||+|||||||.+.|++.+.+ .| . ..+.+.+|+|++.+++ .++++|+.++..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g------~------~~~~~~iv~~D~f~~~-~~~~~~l~~~~~~~~ 91 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KY------G------GEKSIGYASIDDFYLT-HEDQLKLNEQFKNNK 91 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HH------G------GGSCEEEEEGGGGBCC-HHHHHHHHHHTTTCG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cC------C------CCceEEEeccccccCC-hHHHHHHhccccccc
Confidence 36789999999999999999999999875 22 1 0234666699887775 588999987631
Q ss_pred -h--cCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccc------ccccccccC
Q 001293 253 -C--QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT------MVGDEMIRG 323 (1106)
Q Consensus 253 -~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt------~vg~~~~~~ 323 (1106)
+ ++.... .|.+ .....++.+.- ..+| .+. .+...
T Consensus 92 l~~~~g~p~a-------------------~d~~---------------~l~~~l~~l~~--g~~t~~~~~v~~p-~y~~~ 134 (290)
T 1odf_A 92 LLQGRGLPGT-------------------HDMK---------------LLQEVLNTIFN--NNEHPDQDTVVLP-KYDKS 134 (290)
T ss_dssp GGSSSCSTTS-------------------BCHH---------------HHHHHHHHHTC--------CCEEEEC-CEETT
T ss_pred hhhhccCcch-------------------hHHH---------------HHHHHHHHhhc--cCccccCcceeec-cCccc
Confidence 1 111100 1111 11223444422 2122 122 23357
Q ss_pred CChhhhHHHHHH--HHHhcCCccceeecCCCCCCHHH
Q 001293 324 ISGGQKKRVTTG--EMMVGPALALFMDEISTGLDSST 358 (1106)
Q Consensus 324 LSGGqrqRvsia--~al~~~p~vllLDEptsgLD~~~ 358 (1106)
+||||+||+.+| +++ +|+|+|+|||++++|+..
T Consensus 135 ~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 135 QFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp HHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred cCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 999999999997 555 999999999999999864
No 234
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.10 E-value=2.7e-12 Score=149.37 Aligned_cols=167 Identities=13% Similarity=0.132 Sum_probs=94.6
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcccccceEEEEccCCCCCCCCCHHHHHH
Q 001293 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 963 (1106)
Q Consensus 884 L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~tv~e~l~ 963 (1106)
-++|+++++.|+.++|+|+|||||||||++|+|... .+.+++.. +....+|++++++.. .+++.|..-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ft--Tl~p~~G~V~~~~~~--~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFT--TLSPNLGVVEVSEEE--RFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTC--SSCCEEEEEECSSSC--EEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccc--eecceeeEEEecCcc--eEEEEeccc
Confidence 479999999999999999999999999999998642 24444432 123345666654310 011111000
Q ss_pred HHHhhcCCCCCChHHHH--HHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 001293 964 FSAWLRLSPEVDSETRK--MFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041 (1106)
Q Consensus 964 ~~~~~r~~~~~~~~~~~--~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~ 1041 (1106)
+...............+ +.++.++..+++. +.. ...||+|++|++.+|++|+.+|.||++ +++|..
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~~-----~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DEP-----LKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SCH-----HHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCC-----HHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 00000000001111000 0011122222222 111 346999999999999999999999999 999987
Q ss_pred HHHHHHHHHHHH-HhCCCeEEEEe-cCccHHHHHhcC
Q 001293 1042 AAAIVMRTVRNT-VDTGRTVVCTI-HQPSIDIFEAFD 1076 (1106)
Q Consensus 1042 ~~~~i~~~l~~~-~~~g~tvi~~~-H~~~~~~~~~~D 1076 (1106)
.+. .++.+++. .+.|.+++.+| |.-. .+.++++
T Consensus 283 ~~~-~~~~l~~~l~~~g~~vi~iSA~~g~-gi~eL~~ 317 (416)
T 1udx_A 283 EEE-AVKALADALAREGLAVLPVSALTGA-GLPALKE 317 (416)
T ss_dssp CHH-HHHHHHHHHHTTTSCEEECCTTTCT-THHHHHH
T ss_pred hHH-HHHHHHHHHHhcCCeEEEEECCCcc-CHHHHHH
Confidence 764 34444443 34577766554 5433 3444444
No 235
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.08 E-value=4.1e-12 Score=128.28 Aligned_cols=77 Identities=23% Similarity=0.102 Sum_probs=63.9
Q ss_pred EEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcccccceEEEEccCCCCCCCCCHHHH
Q 001293 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 961 (1106)
Q Consensus 882 ~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~tv~e~ 961 (1106)
.++++|||++++|++++|+||||||||||+++|+|.. + ..|+|.++|.++......+ .|++|+..++ .+|+.|+
T Consensus 21 ~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~e~ 94 (158)
T 1htw_A 21 FAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADPEE 94 (158)
T ss_dssp HHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCTTH
T ss_pred HHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeeeccCC--Ccceeccccc-cCCcHHH
Confidence 4799999999999999999999999999999999976 3 4799999998874321111 2789988777 8999999
Q ss_pred HHH
Q 001293 962 LLF 964 (1106)
Q Consensus 962 l~~ 964 (1106)
+.+
T Consensus 95 l~~ 97 (158)
T 1htw_A 95 LEF 97 (158)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 236
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.06 E-value=1.5e-12 Score=148.21 Aligned_cols=180 Identities=14% Similarity=0.062 Sum_probs=108.7
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCC-------cccceEEEEcCCCCCC
Q 001293 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------VPQRTAAYISQHDNHI 238 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d~~~ 238 (1106)
.+|+++|+.+++|++++|+||||||||||+++|+|.+.|+ +|+|.+.|.+.... ..++.++|++|++..+
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 4899999999999999999999999999999999999887 89999999876432 1245689999988776
Q ss_pred CCC------------CHHHHHHHHHHhc--------CCCchhhhhHHHHHHHHhcCC---CCCCC-hHHHHHHHhhhhhh
Q 001293 239 GEM------------TVRETLAFSARCQ--------GVGTRYEMLTELARREKAAGI---KPDPD-IDVYMKAIATEGQE 294 (1106)
Q Consensus 239 ~~l------------TV~E~l~f~~~~~--------~~~~~~~~~~~~~~~~~~~~~---~~~~d-~~~~~~~~~~~~~~ 294 (1106)
... +++|.+... ... .+|-... +. ..+...++ .-++. -+. .+.
T Consensus 120 ~~~~~~~~~l~G~tr~~~e~~~~~-~~~~~~~iliDT~Gi~~~---~~-~v~~~~d~vl~v~d~~~~~~-~~~------- 186 (337)
T 2qm8_A 120 IRPSPSSGTLGGVAAKTRETMLLC-EAAGFDVILVETVGVGQS---ET-AVADLTDFFLVLMLPGAGDE-LQG------- 186 (337)
T ss_dssp EECCCCCSSHHHHHHHHHHHHHHH-HHTTCCEEEEEECSSSSC---HH-HHHTTSSEEEEEECSCC--------------
T ss_pred cccCcccccccchHHHHHHHHHHH-hcCCCCEEEEECCCCCcc---hh-hHHhhCCEEEEEEcCCCccc-HHH-------
Confidence 542 233333110 000 0111000 00 00111110 00000 000 000
Q ss_pred HHHHHHHHHHHcCCccccccccccccccCCChhhhHHHHHHHHHhc------CCccceeecCCCCCCHHHHHHHHHHHHH
Q 001293 295 ANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG------PALALFMDEISTGLDSSTTFQIVNCLRQ 368 (1106)
Q Consensus 295 ~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~------~p~vllLDEptsgLD~~~~~~i~~~l~~ 368 (1106)
.+.....+...+.+ +..|.. ..+.+|+|++|++..+.+++. .|++++ +|++|......+++.|.+
T Consensus 187 i~~~i~~~~~ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~ 257 (337)
T 2qm8_A 187 IKKGIFELADMIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIED 257 (337)
T ss_dssp CCTTHHHHCSEEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHH
T ss_pred HHHHHhccccEEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHH
Confidence 00001111112222 112210 113579999999999999887 578776 999999999999999877
Q ss_pred HH
Q 001293 369 NI 370 (1106)
Q Consensus 369 ~~ 370 (1106)
..
T Consensus 258 ~~ 259 (337)
T 2qm8_A 258 HR 259 (337)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 237
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.06 E-value=1e-10 Score=117.02 Aligned_cols=44 Identities=9% Similarity=0.179 Sum_probs=36.7
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCe-EEEEecCc
Q 001293 1023 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT-VVCTIHQP 1067 (1106)
Q Consensus 1023 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~t-vi~~~H~~ 1067 (1106)
+.+|++|++|||++ +|...+..+.+.+....++|++ +|+++|.+
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 45799999999998 6655588899999988877888 88999964
No 238
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.04 E-value=1.4e-12 Score=133.47 Aligned_cols=138 Identities=16% Similarity=0.224 Sum_probs=80.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCC-CeeeeEEEEcCccCC------ccccc-ceEE----EEccCCCCCCCCCHHHHH
Q 001293 895 VLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPKK------QETFA-RISG----YCEQNDIHSPFVTIYESL 962 (1106)
Q Consensus 895 ~~~al~G~nGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~~------~~~~~-~~~g----yv~q~~~~~~~~tv~e~l 962 (1106)
++++|+|+||||||||++.|+|...+ +...|.|.++|.++. ...++ +.+| +++|+..++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~--------- 73 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF--------- 73 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---------
Confidence 57999999999999999999996431 234799999998732 12333 3456 788876543
Q ss_pred HHHHhhcCCCCCChHHHHHHHHHHHHH-cCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeE-------EEeCC
Q 001293 963 LFSAWLRLSPEVDSETRKMFIDEVMEL-VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII-------FMDEP 1034 (1106)
Q Consensus 963 ~~~~~~r~~~~~~~~~~~~~v~~~l~~-~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~il-------lLDEP 1034 (1106)
++. ...+ ....+++.++. +. . .|..++ .+||||||||++|||+++++|+|. .=|.|
T Consensus 74 -----i~~---~~~~-~~a~l~~~i~~~l~--g-~dt~i~----EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 74 -----IRR---VSEE-EGNDLDWIYERYLS--D-YDLVIT----EGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp -----EEE---CCHH-HHTCHHHHHHHHTT--T-CSEEEE----ESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred -----Eec---CChh-hhhCHHHHHHhhCC--C-CCEEEE----CCcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 110 0111 01124455554 43 2 244443 249999999999999999998762 22444
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCC
Q 001293 1035 TSG---LDARAAAIVMRTVRNTVDTG 1057 (1106)
Q Consensus 1035 tsg---LD~~~~~~i~~~l~~~~~~g 1057 (1106)
..+ +|......+.+.+.+...+|
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred cccCcccCcccHHHHHHHHHHHHhcc
Confidence 322 23333445555665554444
No 239
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.02 E-value=4.5e-12 Score=147.64 Aligned_cols=137 Identities=16% Similarity=0.156 Sum_probs=90.8
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCc-------ccceEEEEc-----
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------PQRTAAYIS----- 232 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~----- 232 (1106)
..+|+++ + .++|++++|+|||||||||||++|+|.++++ +|+|.+.|.++.... ..+.+++.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr 230 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR 230 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHH
Confidence 4478888 4 4899999999999999999999999999887 899999998764211 112344544
Q ss_pred ----CCCCC--CCC----CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHH
Q 001293 233 ----QHDNH--IGE----MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYY 302 (1106)
Q Consensus 233 ----Q~d~~--~~~----lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 302 (1106)
|++.. +++ .|+++++.++..-..+-... ...+ ....++ .
T Consensus 231 ~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tl----------------h~~~--------------~~~~i~-r 279 (418)
T 1p9r_A 231 AILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTL----------------HTNT--------------AVGAVT-R 279 (418)
T ss_dssp HHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEE----------------CCSS--------------SHHHHH-H
T ss_pred HHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCccccc----------------chhh--------------HHHHHH-H
Confidence 87654 344 58888887753211000000 0000 001112 3
Q ss_pred HHHcCCccccccccccccccCCChhhhHHHHHHHHHhcCCccce
Q 001293 303 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALF 346 (1106)
Q Consensus 303 l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vll 346 (1106)
|..+|++... ....|||||+|| ||++|+.+|++..
T Consensus 280 L~~lgl~~~~-------~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 280 LRDMGIEPFL-------ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHTCCHHH-------HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHcCCcHHH-------HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 5567776532 234699999999 9999999999865
No 240
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.02 E-value=6.2e-10 Score=128.57 Aligned_cols=97 Identities=20% Similarity=0.253 Sum_probs=72.9
Q ss_pred HHHHHHHcCCcc-------cccccccc----ccccCCChhhhHHH------HHHHHHhcC-CccceeecCCCCCCHHHHH
Q 001293 299 TDYYLKVLGLDV-------CADTMVGD----EMIRGISGGQKKRV------TTGEMMVGP-ALALFMDEISTGLDSSTTF 360 (1106)
Q Consensus 299 ~~~~l~~lgL~~-------~~dt~vg~----~~~~~LSGGqrqRv------sia~al~~~-p~vllLDEptsgLD~~~~~ 360 (1106)
++..++.++++. ..+..+.+ ..+..||||||||+ ++|++++.+ |++|||||||+|||+..+.
T Consensus 245 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~ 324 (371)
T 3auy_A 245 LNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRA 324 (371)
T ss_dssp HHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHH
T ss_pred HHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHH
Confidence 455677777765 11222222 34567999999988 557899999 9999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEc
Q 001293 361 QIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1106)
Q Consensus 361 ~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~ 399 (1106)
.+.+.|+++. .+.++++ ++|+. ++...+|++++|+
T Consensus 325 ~l~~~l~~~~--~~~~vi~-~th~~-~~~~~~d~~~~l~ 359 (371)
T 3auy_A 325 KLAEIFRKVK--SIPQMII-ITHHR-ELEDVADVIINVK 359 (371)
T ss_dssp HHHHHHHHCC--SCSEEEE-EESCG-GGGGGCSEEEEEE
T ss_pred HHHHHHHHhc--cCCeEEE-EEChH-HHHhhCCEEEEEE
Confidence 9999998742 2345544 55654 4788999999997
No 241
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.01 E-value=5.5e-11 Score=134.30 Aligned_cols=144 Identities=13% Similarity=0.080 Sum_probs=94.3
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcc-------cccc--eEEEEccCCCCCCCCCHHHH
Q 001293 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TFAR--ISGYCEQNDIHSPFVTIYES 961 (1106)
Q Consensus 891 v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~~~--~~gyv~q~~~~~~~~tv~e~ 961 (1106)
.++|++++|+||||||||||++.|+|... +..|+|.+.|.+..+. .+++ .+.|++|.....|..+++|+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 36899999999999999999999999654 3468899999876431 1223 34599999888888899999
Q ss_pred HHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 001293 962 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041 (1106)
Q Consensus 962 l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~ 1041 (1106)
+.+...... +. -+++..++.+..+ .=.++.-.|++++..++.+++||.+|. .
T Consensus 204 l~~~~~~~~--d~----------vliDtaG~~~~~~------------~l~~eL~~i~ral~~de~llvLDa~t~-~--- 255 (328)
T 3e70_C 204 IQHAKARGI--DV----------VLIDTAGRSETNR------------NLMDEMKKIARVTKPNLVIFVGDALAG-N--- 255 (328)
T ss_dssp HHHHHHHTC--SE----------EEEEECCSCCTTT------------CHHHHHHHHHHHHCCSEEEEEEEGGGT-T---
T ss_pred HHHHHhccc--hh----------hHHhhccchhHHH------------HHHHHHHHHHHHhcCCCCEEEEecHHH-H---
Confidence 987532110 00 0111112211111 112334458899988888889995554 3
Q ss_pred HHHHHHHHHHHHH-hCCCeEEEEecCc
Q 001293 1042 AAAIVMRTVRNTV-DTGRTVVCTIHQP 1067 (1106)
Q Consensus 1042 ~~~~i~~~l~~~~-~~g~tvi~~~H~~ 1067 (1106)
.+++.++.+. ..+.|+|++||..
T Consensus 256 ---~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 256 ---AIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp ---HHHHHHHHHHHHSCCCEEEEECGG
T ss_pred ---HHHHHHHHHHHhcCCCEEEEeCcC
Confidence 3344445544 3489999999953
No 242
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.01 E-value=1.8e-10 Score=118.85 Aligned_cols=46 Identities=13% Similarity=0.213 Sum_probs=41.6
Q ss_pred hcCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCeEEEEecCcc
Q 001293 1023 VANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1068 (1106)
Q Consensus 1023 ~~~p~illLDEPts-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1068 (1106)
+.+|++|+||||++ ++|+..+..+.+.+....++|+++|+|||.+.
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 45999999999995 99999999999999988778999999999875
No 243
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.99 E-value=1.2e-12 Score=148.88 Aligned_cols=164 Identities=12% Similarity=0.118 Sum_probs=103.5
Q ss_pred EEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcc-------cccceEEEEccCCCCCC
Q 001293 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TFARISGYCEQNDIHSP 954 (1106)
Q Consensus 882 ~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~~gyv~q~~~~~~ 954 (1106)
.+|+++|+++++|++++|+|+||||||||+++|+|... +..|+|.+.|.+.... ..++.++|++|++..++
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~--~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 120 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT--AAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFI 120 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEE
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh--hCCCEEEEEEEcCcccccccchHHHhhhheeeccCccccc
Confidence 47999999999999999999999999999999998643 3367888888765321 23456899999877654
Q ss_pred CC------------CHHHHHHHHH-------------------hhcCCC-------CCC-hHHHHHHHHHHHHHcCCc--
Q 001293 955 FV------------TIYESLLFSA-------------------WLRLSP-------EVD-SETRKMFIDEVMELVELN-- 993 (1106)
Q Consensus 955 ~~------------tv~e~l~~~~-------------------~~r~~~-------~~~-~~~~~~~v~~~l~~~~l~-- 993 (1106)
.. +++|.+.... .+.... +.. ..........+++...+-
T Consensus 121 ~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivvl 200 (337)
T 2qm8_A 121 RPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAV 200 (337)
T ss_dssp ECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEEE
T ss_pred ccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEEE
Confidence 21 1333331100 000000 000 000000000112222111
Q ss_pred cccccccCCCCCCCCCHHHHHHHHHHHHHhc------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001293 994 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055 (1106)
Q Consensus 994 ~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~------~p~illLDEPtsgLD~~~~~~i~~~l~~~~~ 1055 (1106)
+..|.. ....+|+|++|++..|++++. +|++++ ||++|......+++.|.+...
T Consensus 201 NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 201 NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 111210 013479999999999999987 688876 999999999999999988653
No 244
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.99 E-value=8.4e-11 Score=131.81 Aligned_cols=123 Identities=11% Similarity=0.105 Sum_probs=78.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEE---cCccCCCCccc---ceEEEEcCCCCCC-----CCCCHH
Q 001293 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTY---NGHDMDEFVPQ---RTAAYISQHDNHI-----GEMTVR 244 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~---~G~~~~~~~~~---~~~~yv~Q~d~~~-----~~lTV~ 244 (1106)
.+|++++|+||||||||||+|+|+ ..++. +|+|.+ +|.+....... +.+|||+|++.+. +.+|+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 468999999999999999999999 98887 999999 89876543211 2579999987443 78999
Q ss_pred HHH--HHHHHhcCCCchhhhhHHH-HHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcc-cccccccccc
Q 001293 245 ETL--AFSARCQGVGTRYEMLTEL-ARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMVGDEM 320 (1106)
Q Consensus 245 E~l--~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~~ 320 (1106)
|++ .|+. . .+. |+. .+..+..+ ....++++++.+||+. .++..
T Consensus 238 e~l~~~f~~-~----------~~~~c~~---~~~~~~~e--------------~~~~v~~~l~~~~L~~~~~~~~----- 284 (302)
T 2yv5_A 238 REVRNYFRE-F----------LRYQCKY---PDCTHTNE--------------PGCAVKEAVKNGEISCERYKSY----- 284 (302)
T ss_dssp GGGGGGCGG-G----------HHHHHHS---TTCCSSSC--------------TTCHHHHHHHTTSSCHHHHHHH-----
T ss_pred HHHHHHHHH-H----------HHccCCC---CCCCCCCC--------------CCCHHHHHHHcCCCCHHHHHHH-----
Confidence 888 4431 0 000 100 00000000 1124667888999975 55544
Q ss_pred ccCCChhhhHHHHHHH
Q 001293 321 IRGISGGQKKRVTTGE 336 (1106)
Q Consensus 321 ~~~LSGGqrqRvsia~ 336 (1106)
.+.|||.++|++.|||
T Consensus 285 ~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 285 LKIIKVYLEEIKELCR 300 (302)
T ss_dssp HHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4469998899999986
No 245
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.99 E-value=2e-12 Score=154.64 Aligned_cols=85 Identities=20% Similarity=0.188 Sum_probs=66.0
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHH
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
..+++++++.+++|+.++|+|||||||||||++|+|+++|+ +|.|+++|.+--.......++++.|........|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 34789999999999999999999999999999999999998 899999986521221234567777765433446777
Q ss_pred HHHHHHHH
Q 001293 245 ETLAFSAR 252 (1106)
Q Consensus 245 E~l~f~~~ 252 (1106)
+.+..+.+
T Consensus 324 ~~l~~~LR 331 (511)
T 2oap_1 324 DLLRAALR 331 (511)
T ss_dssp HHHHTTGG
T ss_pred HHHHHhhc
Confidence 77765554
No 246
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.97 E-value=1.1e-10 Score=120.54 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=36.5
Q ss_pred hcCCccceeecCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhH
Q 001293 339 VGPALALFMDEIST-GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 387 (1106)
Q Consensus 339 ~~~p~vllLDEpts-gLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~ 387 (1106)
+.+|++|+||||++ ++|+.....+.+.+..... .+.++|++.+++..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChhH
Confidence 44899999999985 9999999988888876543 456777766555443
No 247
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.94 E-value=3.9e-11 Score=133.45 Aligned_cols=129 Identities=14% Similarity=0.065 Sum_probs=82.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcccccceEEEEccCCCCCCCCCHHHHHHHHHh----
Q 001293 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAW---- 967 (1106)
Q Consensus 892 ~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~---- 967 (1106)
+++.++||+|++|||||||.+.|++.... .| .. .+.+.+|+|++.+++ .++++++.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~~------~~~~~iv~~D~f~~~-~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------GG------EKSIGYASIDDFYLT-HEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------GG------GSCEEEEEGGGGBCC-HHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------CC------CceEEEeccccccCC-hHHHHHHhccccccch
Confidence 46789999999999999999999985431 11 00 234556699988775 478889887521
Q ss_pred h--cCCCCCChHHHHHHHHHHHHHcCCc--cc--cccccCCCCCCCCCHHHHHHHHHH--HHHhcCCCeEEEeCCCCCCC
Q 001293 968 L--RLSPEVDSETRKMFIDEVMELVELN--PL--RQSLVGLPGVSGLSTEQRKRLTIA--VELVANPSIIFMDEPTSGLD 1039 (1106)
Q Consensus 968 ~--r~~~~~~~~~~~~~v~~~l~~~~l~--~~--~~~~~g~~g~~~LSgGqrqrl~iA--~aL~~~p~illLDEPtsgLD 1039 (1106)
+ +..++..+ .....+.++.+... .. ....+.. ....+||||+||+.+| +++ +|+|||+|||++++|
T Consensus 93 ~~~~g~p~a~d---~~~l~~~l~~l~~g~~t~~~~~v~~p~-y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld 166 (290)
T 1odf_A 93 LQGRGLPGTHD---MKLLQEVLNTIFNNNEHPDQDTVVLPK-YDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFN 166 (290)
T ss_dssp GSSSCSTTSBC---HHHHHHHHHHHTC------CCEEEECC-EETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCC
T ss_pred hhhccCcchhH---HHHHHHHHHHhhccCccccCcceeecc-CccccCCccccccccccceEc--CCCEEEEeCccccCC
Confidence 1 11111111 22344555555322 00 0000000 1246899999999987 555 899999999999999
Q ss_pred HHH
Q 001293 1040 ARA 1042 (1106)
Q Consensus 1040 ~~~ 1042 (1106)
+..
T Consensus 167 ~~~ 169 (290)
T 1odf_A 167 PIL 169 (290)
T ss_dssp CCC
T ss_pred ccc
Confidence 853
No 248
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.94 E-value=4.4e-10 Score=130.17 Aligned_cols=152 Identities=22% Similarity=0.245 Sum_probs=87.6
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHH--hCCCC---CCeeeeEEEEcCccCCcccccceEEEEccCCCCCCCCCHHHHHH
Q 001293 889 GAFRPGVLTALMGVSGAGKTTLMDVL--AGRKT---GGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 963 (1106)
Q Consensus 889 ~~v~~G~~~al~G~nGaGKSTLl~~L--~g~~~---~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~tv~e~l~ 963 (1106)
+-|++|++++|+||||||||||+..| .+... ++...+.+++++..... . +.+.
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~---------------------~-~rl~ 230 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFR---------------------P-VRLV 230 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCC---------------------H-HHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccC---------------------H-HHHH
Confidence 56999999999999999999999955 45432 11223467776643210 0 0000
Q ss_pred HHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCH-HHHHHHHHHHHHh--cCCCeEEEeCCCCCCCH
Q 001293 964 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST-EQRKRLTIAVELV--ANPSIIFMDEPTSGLDA 1040 (1106)
Q Consensus 964 ~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSg-Gqrqrl~iA~aL~--~~p~illLDEPtsgLD~ 1040 (1106)
.-+. +. .... +.+++.+.+ . ...+. .+.+.+..+.+++ .+|++|++||||+.+|.
T Consensus 231 ~~a~-~~--gl~~-------~~vleni~~---~---------~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 231 SIAQ-RF--GLDP-------DDALNNVAY---A---------RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp HHHH-HT--TCCH-------HHHHHTEEE---E---------ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred HHHH-Hc--CCCh-------HhHhhcEEE---e---------ccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 0000 00 0110 112221111 0 01222 2344444444443 46999999999999996
Q ss_pred HHH------------HHHHHHHHHHHhC-CCeEEEEecCcc------------------HHHHHhcCeEEEEecC
Q 001293 1041 RAA------------AIVMRTVRNTVDT-GRTVVCTIHQPS------------------IDIFEAFDELFLMKRG 1084 (1106)
Q Consensus 1041 ~~~------------~~i~~~l~~~~~~-g~tvi~~~H~~~------------------~~~~~~~D~v~~l~~G 1084 (1106)
... ..+++.|++++++ |+|||+|+|..+ ..+...+|.++.|+++
T Consensus 289 ~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 289 DFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred hhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 432 5678888888654 999999999821 1245568999999875
No 249
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.93 E-value=6.5e-13 Score=158.82 Aligned_cols=178 Identities=16% Similarity=0.139 Sum_probs=108.2
Q ss_pred EEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcccccceEEEEccCCCCCCCCCHHHH
Q 001293 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 961 (1106)
Q Consensus 882 ~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~tv~e~ 961 (1106)
.+++++++.+++|+.++|+|||||||||||++|+|... +..|.|.+.|.+--...-...+++..|........|..+.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~--~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~ 325 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP--PDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDL 325 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC--TTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC--CCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHH
Confidence 47899999999999999999999999999999999765 3478899988652111112345566654432223455544
Q ss_pred HHHHHhhcCCC------CCChHHHHH------------------HHHHHHHHcCCccc--cccccC-CC----CCCCCCH
Q 001293 962 LLFSAWLRLSP------EVDSETRKM------------------FIDEVMELVELNPL--RQSLVG-LP----GVSGLST 1010 (1106)
Q Consensus 962 l~~~~~~r~~~------~~~~~~~~~------------------~v~~~l~~~~l~~~--~~~~~g-~~----g~~~LSg 1010 (1106)
+... +|..+ ++...+... .+.++++.+...+. ...... .. ....+|+
T Consensus 326 l~~~--LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 326 LRAA--LRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHTT--GGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHh--hccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 4321 22221 111111100 02233333322110 000000 00 0124799
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE--EecCccHHHHHhcC
Q 001293 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC--TIHQPSIDIFEAFD 1076 (1106)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~--~~H~~~~~~~~~~D 1076 (1106)
||+||+++|. + | |+|||+.+...+++.+.++...|+|+++ ++|+++ ++...|+
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~g 458 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFLG 458 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHHT
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHcC
Confidence 9999887752 1 7 9999999888888888777666899985 899886 5666654
No 250
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.92 E-value=2.3e-13 Score=143.12 Aligned_cols=57 Identities=18% Similarity=0.129 Sum_probs=43.3
Q ss_pred HHH-HHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001293 334 TGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1106)
Q Consensus 334 ia~-al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~ 400 (1106)
.++ +++.+|++++|||+|+++|..+...|.+.|....+.. .+.| .. ..||.|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~------~~a~---~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDM------ESSK---EP-GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHT------TGGG---ST-TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------HHhh---cc-CCceEEEECCC
Confidence 455 7889999999999999999999999999887754421 1122 12 67899988864
No 251
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.92 E-value=4.7e-10 Score=129.92 Aligned_cols=62 Identities=8% Similarity=-0.014 Sum_probs=42.9
Q ss_pred cCCccceeecCCCCCCHHHH------------HHHHHHHHHHHHhcCCeEEEEEecCh-------------------hHH
Q 001293 340 GPALALFMDEISTGLDSSTT------------FQIVNCLRQNIHINSGTAVISLLQPA-------------------PET 388 (1106)
Q Consensus 340 ~~p~vllLDEptsgLD~~~~------------~~i~~~l~~~~~~~~~t~vi~i~q~~-------------------~~~ 388 (1106)
.+|+++++|||++.+|+... .++++.|+++++..+.++|+ ++|.. ..+
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIl-v~Hv~~~~~g~~~~~g~~~~p~gg~~l 350 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVV-TNQVVAQVDGGMAFNPDPKKPIGGNIM 350 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEE-EEEC--------------------CHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEE-EEeecccCCccccccCCCccCCchhHH
Confidence 57999999999999997543 56788888888765656555 45541 224
Q ss_pred HhhcCeEEEEcCCe
Q 001293 389 YDLFDDIILLSDGQ 402 (1106)
Q Consensus 389 ~~~~D~iilL~~G~ 402 (1106)
.+.+|.++.|..|+
T Consensus 351 ~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 351 AYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHCSEEEEEEECS
T ss_pred HHhcceEEEEEecC
Confidence 56789999998653
No 252
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.92 E-value=5.1e-10 Score=130.15 Aligned_cols=169 Identities=14% Similarity=0.126 Sum_probs=97.5
Q ss_pred eeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHHHHH
Q 001293 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETL 247 (1106)
Q Consensus 168 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 247 (1106)
-+++++.+++|+.++|+|+|||||||||++|+|..+ .+.+.+.... ...+++|.+++ ...+++.++.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl--~p~~G~V~~~~--~~~~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTL--SPNLGVVEVSE--EERFTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSS--CCEEEEEECSS--SCEEEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCccccee--cceeeEEEecC--cceEEEEecc
Confidence 479999999999999999999999999999999843 2333333322 12455565543 0111111111
Q ss_pred HH---HHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCC
Q 001293 248 AF---SARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1106)
Q Consensus 248 ~f---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1106)
-+ +....+.+. ...+.. ..++.++..+++. +.....+
T Consensus 214 Gli~~a~~~~~L~~------~fl~~~--------------------------era~~lL~vvDls--------~~~~~~l 253 (416)
T 1udx_A 214 GIIEGASEGKGLGL------EFLRHI--------------------------ARTRVLLYVLDAA--------DEPLKTL 253 (416)
T ss_dssp CCCCCGGGSCCSCH------HHHHHH--------------------------TSSSEEEEEEETT--------SCHHHHH
T ss_pred ccccchhhhhhhhH------HHHHHH--------------------------HHHHhhhEEeCCc--------cCCHHHH
Confidence 10 000000000 000000 0011122223332 2334569
Q ss_pred ChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001293 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1106)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1106)
|+||+||+.+|++|...|.++++ +.+|.... ..++.+++.....+.+++.+..+....+.++++.
T Consensus 254 s~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~ 318 (416)
T 1udx_A 254 ETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEA 318 (416)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHH
Confidence 99999999999999999999999 99999876 5555555544433445555544444445554443
No 253
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.91 E-value=8.1e-11 Score=131.91 Aligned_cols=122 Identities=15% Similarity=0.204 Sum_probs=79.8
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEE---cCccCCcc--ccc-ceEEEEccCCCCC-----CCCCHH
Q 001293 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPKKQE--TFA-RISGYCEQNDIHS-----PFVTIY 959 (1106)
Q Consensus 891 v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~--~~~-~~~gyv~q~~~~~-----~~~tv~ 959 (1106)
+.+|++++|+|+||||||||+|+|+ ... +.+|+|.+ +|.+.... .+. +.+||++|+|.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 3468999999999999999999999 765 46899999 88765432 122 2579999998653 67899
Q ss_pred HHH--HHHH---h-hcCCCCCChHHHHHHHHHHHHHcCCcc-ccccccCCCCCCCCCHHHHHHHHHHHH
Q 001293 960 ESL--LFSA---W-LRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVE 1021 (1106)
Q Consensus 960 e~l--~~~~---~-~r~~~~~~~~~~~~~v~~~l~~~~l~~-~~~~~~g~~g~~~LSgGqrqrl~iA~a 1021 (1106)
|++ .|.. . .+........+....+.++++.++|.+ ..+... ..|||.++|++.|||+
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 887 4541 0 111110111112345789999999986 555543 4589989999999874
No 254
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.90 E-value=6.7e-10 Score=127.23 Aligned_cols=134 Identities=16% Similarity=0.048 Sum_probs=71.9
Q ss_pred EEEEcCCCCcHHHHHHHHhC-CCCCCeeeeEEEEcCccCCcc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCC
Q 001293 897 TALMGVSGAGKTTLMDVLAG-RKTGGYITGNITISGYPKKQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEV 974 (1106)
Q Consensus 897 ~al~G~nGaGKSTLl~~L~g-~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~~~~ 974 (1106)
+.|.||||+|||||+++|++ ... +..|.+.++|.+.... ...+.+++++|.+.+....+- ....
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~--~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG--PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD------------MGNN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC--TTCCC------------------CCEECSSEEEECCC----------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC--CCCCeEEecceeecccccccceeeeecccceEEecHhh------------cCCc
Confidence 89999999999999999998 333 3468888888654321 123456777776533111000 0000
Q ss_pred ChHHHHHHHHHHHHHcC-CccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 001293 975 DSETRKMFIDEVMELVE-LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053 (1106)
Q Consensus 975 ~~~~~~~~v~~~l~~~~-l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~ 1053 (1106)
... .+.+.++.+. ..++.+. ..||| +..+|+++|+|||++ ||..++..+.+.+.+.
T Consensus 105 ~~~----~~~~~i~~~~~~~~~~~~-------~~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 105 DRI----VIQELLKEVAQMEQVDFQ-------DSKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKY 161 (354)
T ss_dssp CHH----HHHHHHHHHTTTTC------------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHS
T ss_pred chH----HHHHHHHHHHHhcccccc-------ccccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhh
Confidence 111 1233333321 1111110 02465 778999999999999 9999999999999886
Q ss_pred HhCCCeEEEEecCcc
Q 001293 1054 VDTGRTVVCTIHQPS 1068 (1106)
Q Consensus 1054 ~~~g~tvi~~~H~~~ 1068 (1106)
. .++++|+++|+++
T Consensus 162 ~-~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 162 S-KNIRLIMVCDSMS 175 (354)
T ss_dssp T-TTEEEEEEESCSC
T ss_pred c-CCCEEEEEeCCHH
Confidence 4 4789999999976
No 255
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.89 E-value=8.8e-12 Score=143.63 Aligned_cols=169 Identities=18% Similarity=0.201 Sum_probs=114.9
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhC------------CCCCCCCceeEEEEcCccCCC----CcccceE---EEEcCC
Q 001293 174 VIKPGRLTLLLGPPSSGKTTLLLALAG------------KLDPTLKVSGTVTYNGHDMDE----FVPQRTA---AYISQH 234 (1106)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G------------~~~~~~~~~G~V~~~G~~~~~----~~~~~~~---~yv~Q~ 234 (1106)
.+++|..++|+|+||||||||+++|+| ..+|+ +|.|.++|..+.. +.+++.+ .++.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~---~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~ 92 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPE---EAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI 92 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTT---EEEEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecce---eeeeeeCCcchhhhhhhcccccccCcceEEEec
Confidence 567899999999999999999999999 33455 8999999854211 2233333 467777
Q ss_pred CCCCCCCCHHHHH--HHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccc
Q 001293 235 DNHIGEMTVRETL--AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (1106)
Q Consensus 235 d~~~~~lTV~E~l--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (1106)
+-+...++..|++ .|-..++.. +.++..+...
T Consensus 93 pGl~~~~s~~e~L~~~fl~~ir~~-------------------------------------------d~il~Vvd~~--- 126 (392)
T 1ni3_A 93 AGLTKGASTGVGLGNAFLSHVRAV-------------------------------------------DAIYQVVRAF--- 126 (392)
T ss_dssp GGGCCCCCSSSSSCHHHHHHHTTC-------------------------------------------SEEEEEEECC---
T ss_pred cccccCCcHHHHHHHHHHHHHHHH-------------------------------------------HHHHHHHhcc---
Confidence 7777777766655 333222210 0001111111
Q ss_pred ccccccccccCCChhhhHHHHHHHHHhcCC--ccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHh
Q 001293 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390 (1106)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~al~~~p--~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~ 390 (1106)
+ +..+..+||+. +| +++++|||+.++|.......++.++......+.| ++ .|...++.+
T Consensus 127 ~----d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~t-i~--sh~~~~~~~ 187 (392)
T 1ni3_A 127 D----DAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANT-LE--MKAKKEEQA 187 (392)
T ss_dssp C----TTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCS-SS--HHHHHHHHH
T ss_pred c----cceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCc-cc--cccHHHHHH
Confidence 1 12233466653 88 9999999999999999999998888751223344 33 677888999
Q ss_pred hcCeEE-EEcCC-eEEEEcChH
Q 001293 391 LFDDII-LLSDG-QIVYQGPRE 410 (1106)
Q Consensus 391 ~~D~ii-lL~~G-~iv~~G~~~ 410 (1106)
+||++. +|.+| ++++.|+.+
T Consensus 188 l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 188 IIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHTTCSCGGGSCCC
T ss_pred HHHHHHHHhccCCceeecCCCC
Confidence 999999 99999 988877654
No 256
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.89 E-value=4.1e-12 Score=140.52 Aligned_cols=142 Identities=15% Similarity=0.177 Sum_probs=93.1
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcc---cceEEEEcCCC-CCCCC
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD-NHIGE 240 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~ 240 (1106)
..+++++++.+++| ++|+||||||||||+++|+|.+.+ |.|.++|.++..... .+.+++++|.. ...+.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 34899999999999 999999999999999999999763 789999987643221 13456666642 33444
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccc
Q 001293 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1106)
+++.|++.+....++ .... + .+.... +..
T Consensus 106 i~~~Deid~~~~~r~--------------~~~~--------------------------~------~~~~~~-----~~~ 134 (274)
T 2x8a_A 106 VIFFDEVDALCPRRS--------------DRET--------------------------G------ASVRVV-----NQL 134 (274)
T ss_dssp EEEEETCTTTCC-------------------------------------------------------CTTHH-----HHH
T ss_pred eEeeehhhhhhcccC--------------CCcc--------------------------h------HHHHHH-----HHH
Confidence 555555543210000 0000 0 000111 122
Q ss_pred ccCCChhhhHHHHHHHHHhcCCccceeecCCC------------CCCHHHHHHHHHHH
Q 001293 321 IRGISGGQKKRVTTGEMMVGPALALFMDEIST------------GLDSSTTFQIVNCL 366 (1106)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEpts------------gLD~~~~~~i~~~l 366 (1106)
...|||||+||+.+++++..+|++| ||++. -.|...+.+|++.+
T Consensus 135 l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 135 LTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred HHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 3459999999999999999999975 98864 23667777776644
No 257
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.89 E-value=3.7e-12 Score=148.36 Aligned_cols=132 Identities=14% Similarity=0.004 Sum_probs=89.1
Q ss_pred EEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCc-------ccccceEEEEc-------
Q 001293 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCE------- 947 (1106)
Q Consensus 882 ~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~------- 947 (1106)
.+|+++ + .++|++++|+|||||||||||++|+|... +..|.|.+.+.++.. ....+.+|+.+
T Consensus 157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~--~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~ 232 (418)
T 1p9r_A 157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELN--SSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAI 232 (418)
T ss_dssp HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHC--CTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHH
T ss_pred HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHH
Confidence 367787 4 48999999999999999999999999654 236888888876531 12233345544
Q ss_pred --cCCCCC--CC----CCHHHHHHHHHhhcC----CCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHH
Q 001293 948 --QNDIHS--PF----VTIYESLLFSAWLRL----SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1015 (1106)
Q Consensus 948 --q~~~~~--~~----~tv~e~l~~~~~~r~----~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqr 1015 (1106)
|++... .. .|+.+++.+...-.. ....+.. . +.+.++.+++.+.. . +..|||||+||
T Consensus 233 Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~---~-~i~rL~~lgl~~~~--~-----~~~LSgg~~QR 301 (418)
T 1p9r_A 233 LRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAV---G-AVTRLRDMGIEPFL--I-----SSSLLGVLAQR 301 (418)
T ss_dssp GGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSH---H-HHHHHHHHTCCHHH--H-----HHHEEEEEEEE
T ss_pred hccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHH---H-HHHHHHHcCCcHHH--H-----HHHHHHHHHHH
Confidence 876542 32 588898887542110 0111111 1 22356777887653 2 24699999999
Q ss_pred HHHHHHHhcCCCeEE
Q 001293 1016 LTIAVELVANPSIIF 1030 (1106)
Q Consensus 1016 l~iA~aL~~~p~ill 1030 (1106)
||++|+.+|++..
T Consensus 302 --LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 --LVRTLCPDCKEPY 314 (418)
T ss_dssp --EEEEECTTTCEEE
T ss_pred --hhhhhcCCCCccC
Confidence 9999999999876
No 258
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.88 E-value=1.8e-11 Score=129.67 Aligned_cols=30 Identities=40% Similarity=0.473 Sum_probs=28.2
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 001293 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
.++|++++|+||||||||||+++|+|.+++
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 478999999999999999999999999875
No 259
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.83 E-value=2.9e-09 Score=106.43 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=30.1
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 001293 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
.+|+++ +|+.++|+||||||||||+++|++.+.+
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 356666 8999999999999999999999999865
No 260
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.80 E-value=6.2e-10 Score=124.76 Aligned_cols=73 Identities=19% Similarity=0.242 Sum_probs=51.4
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEE---cCccCCCCcc---cceEEEEcCCCC-----------
Q 001293 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTY---NGHDMDEFVP---QRTAAYISQHDN----------- 236 (1106)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~---~G~~~~~~~~---~~~~~yv~Q~d~----------- 236 (1106)
.+.+|++++|+|||||||||||++|+|+..|+ +|+|.+ +|.++..... .+.++||+|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 34579999999999999999999999999998 999999 8887654321 135799999864
Q ss_pred -----CCCCCCHHHHHHHH
Q 001293 237 -----HIGEMTVRETLAFS 250 (1106)
Q Consensus 237 -----~~~~lTV~E~l~f~ 250 (1106)
+++++|| ||+.|+
T Consensus 242 ~~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp HHHGGGSTTSSS-CCCSST
T ss_pred HHHHHHHHhccc-ccCcCC
Confidence 5888899 888875
No 261
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.77 E-value=4.8e-11 Score=126.34 Aligned_cols=149 Identities=17% Similarity=0.184 Sum_probs=83.1
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCCCC-CeeeeEEEEcCccCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhc
Q 001293 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (1106)
Q Consensus 891 v~~G~~~al~G~nGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r 969 (1106)
.++|+++||+||||||||||+++|+|...+ |...|.|.++|+...... .+++.... .+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~--------------------~~~~~~~~-~~ 77 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRL--------------------LEPRGLLP-RK 77 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHH--------------------HGGGTCGG-GT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHH--------------------HHHhcccc-cC
Confidence 578999999999999999999999996431 223566666665432211 11110000 00
Q ss_pred CCC-CCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHH-HHHhcCCCeEEEeCCC-----------C
Q 001293 970 LSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIA-VELVANPSIIFMDEPT-----------S 1036 (1106)
Q Consensus 970 ~~~-~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA-~aL~~~p~illLDEPt-----------s 1036 (1106)
... ..+... ..+.+..+...+-.+...... ...+|+||+|++++| ++++.++.++++|||. .
T Consensus 78 ~~~~~~~~~~----~~~~l~~l~~~~~i~~p~~d~-~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i 152 (208)
T 3c8u_A 78 GAPETFDFEG----FQRLCHALKHQERVIYPLFDR-ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSI 152 (208)
T ss_dssp TSGGGBCHHH----HHHHHHHHHHCSCEEEEEEET-TTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEE
T ss_pred CCCchhhHHH----HHHHHHHHhcCCceecccCCc-cccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEE
Confidence 000 011111 122222221111011111111 235799999999998 8888888888899985 2
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q 001293 1037 GLDARAAAIVMRTVRNTVDTGRTVVCTIH 1065 (1106)
Q Consensus 1037 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H 1065 (1106)
-||......+.+.+++....|.|.--+.|
T Consensus 153 ~vd~~~~~~~~R~~~R~~~~g~t~~~~~~ 181 (208)
T 3c8u_A 153 RLEVPMADLEARLVQRWLDHGLNHDAAVA 181 (208)
T ss_dssp EECCCHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 35666666667777665555665443333
No 262
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.77 E-value=1.1e-11 Score=142.83 Aligned_cols=172 Identities=11% Similarity=0.079 Sum_probs=112.8
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCCC----------CCCeeeeEEEEcCccCCcc----cccce---EEEEccCCCC
Q 001293 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRK----------TGGYITGNITISGYPKKQE----TFARI---SGYCEQNDIH 952 (1106)
Q Consensus 890 ~v~~G~~~al~G~nGaGKSTLl~~L~g~~----------~~~~~~G~i~i~g~~~~~~----~~~~~---~gyv~q~~~~ 952 (1106)
.+++|..+||+|+||||||||+++|+|.. +-.+..|.+.+.|...... ...+. ..++.+.+-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 56789999999999999999999999932 1235679999987432110 01122 2466676666
Q ss_pred CCCCCHHHHH--HHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCC--Ce
Q 001293 953 SPFVTIYESL--LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP--SI 1028 (1106)
Q Consensus 953 ~~~~tv~e~l--~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p--~i 1028 (1106)
.+..+..|++ .|...++.. +.++..++..+ + ..+..++++. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~------------d~il~Vvd~~~--d-----~~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV------------DAIYQVVRAFD--D-----AEIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC------------SEEEEEEECCC--T-----TCSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHH------------HHHHHHHhccc--c-----ceeeeecccc------------Ccchhh
Confidence 6666655544 333333211 11111121111 1 1122345542 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCeEEEEecCccHHHHHhcCeEE-EEecCCEEEEecCCCC
Q 001293 1029 IFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQPSIDIFEAFDELF-LMKRGGQEIYVGPLGR 1095 (1106)
Q Consensus 1029 llLDEPtsgLD~~~~~~i~~~l~~~-~~~g~tvi~~~H~~~~~~~~~~D~v~-~l~~Gg~~~~~g~~g~ 1095 (1106)
+++|||+.++|+......++.++.. ...|.||+ +|... ++.+.||++. +|.+|.+.++.|.+..
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhccCCceeecCCCCH
Confidence 9999999999999999999999987 66677764 99876 6888999998 8876416677776654
No 263
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.73 E-value=4.2e-12 Score=133.54 Aligned_cols=56 Identities=11% Similarity=0.211 Sum_probs=41.5
Q ss_pred HHH-HHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeEEEEe
Q 001293 1018 IAV-ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1106)
Q Consensus 1018 iA~-aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1082 (1106)
+|+ +++.+|++++|||||+++|.++.+.|++.|.+.... +..+|.+ ..||.+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 455 678888888999999999999999999988876532 2334521 4578887764
No 264
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.72 E-value=1.1e-08 Score=117.00 Aligned_cols=135 Identities=13% Similarity=0.151 Sum_probs=67.1
Q ss_pred EEEEcCCCCcHHHHHHHHhC-CCCCCCCceeEEEEcCccCCCCc-ccceEEEEcCCCCCCCCCCHHHHHHHHHHhcCCCc
Q 001293 181 TLLLGPPSSGKTTLLLALAG-KLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 258 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G-~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~ 258 (1106)
++|.||||+|||||+++|+| .+.++ .|.+.++|.+..... ....++|++|.+.+....+ + .+...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~ 105 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D--------MGNND 105 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC--------------CC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHh--h--------cCCcc
Confidence 89999999999999999999 66776 899999987654221 1356788888653211100 0 00000
Q ss_pred hhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCCChhhhHHHHHHHHH
Q 001293 259 RYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338 (1106)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al 338 (1106)
. ... +...+.+.+..++. ..+ .+|| +
T Consensus 106 ~-~~~--------------------------------~~~i~~~~~~~~~~----~~~------~ls~-----------l 131 (354)
T 1sxj_E 106 R-IVI--------------------------------QELLKEVAQMEQVD----FQD------SKDG-----------L 131 (354)
T ss_dssp H-HHH--------------------------------HHHHHHHTTTTC-------------------------------
T ss_pred h-HHH--------------------------------HHHHHHHHHhcccc----ccc------cccc-----------c
Confidence 0 000 00011111111111 000 3566 7
Q ss_pred hcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChh
Q 001293 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 386 (1106)
Q Consensus 339 ~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~ 386 (1106)
.++|+++++|||++ ||..+...+.+.|.+. ..++++|.++|...
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~---~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKY---SKNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHS---TTTEEEEEEESCSC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhh---cCCCEEEEEeCCHH
Confidence 88999999999999 9999999999998864 23455555555543
No 265
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.72 E-value=7.5e-11 Score=132.71 Aligned_cols=98 Identities=15% Similarity=0.134 Sum_probs=72.5
Q ss_pred eeeeecccccccChhhHHhhccccCceEEeeeeEEEE-------------------eCCeEEEEEcCCCCcHHHHHHHHh
Q 001293 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAF-------------------RPGVLTALMGVSGAGKTTLMDVLA 915 (1106)
Q Consensus 855 ~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v-------------------~~G~~~al~G~nGaGKSTLl~~L~ 915 (1106)
.++++||+..|. +++++|++.+ ++|+++||+|+||||||||+++|+
T Consensus 37 ~i~~~~v~~~y~---------------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~ 101 (308)
T 1sq5_A 37 DLSLEEVAEIYL---------------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp TCCHHHHHHTHH---------------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred ccchHhHHHHHH---------------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 367788876662 2567777766 899999999999999999999999
Q ss_pred CCCCCCeeeeEEEE---cCccCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhc
Q 001293 916 GRKTGGYITGNITI---SGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (1106)
Q Consensus 916 g~~~~~~~~G~i~i---~g~~~~~~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r 969 (1106)
|.....+..|.|.+ ||+..... .++.+|++ |...+.+.+++.+++.+...++
T Consensus 102 ~~l~~~~~~G~i~vi~~d~~~~~~~-~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 102 ALLSRWPEHRRVELITTDGFLHPNQ-VLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHHTTSTTCCCEEEEEGGGGBCCHH-HHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HHHhhCCCCCeEEEEecCCccCcHH-HHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 95321124688999 88775432 23456788 7766777889999988765543
No 266
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.72 E-value=6.8e-11 Score=134.70 Aligned_cols=153 Identities=20% Similarity=0.223 Sum_probs=93.0
Q ss_pred eeeeceeEEEeCC-------eEEEEEcCCCCcHHHHHHHHhCCCCCCC-CceeEEEEcCccCCCC---cccceEEEEcCC
Q 001293 166 TILKDVSGVIKPG-------RLTLLLGPPSSGKTTLLLALAGKLDPTL-KVSGTVTYNGHDMDEF---VPQRTAAYISQH 234 (1106)
Q Consensus 166 ~iL~~vs~~i~~G-------~~~~llGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~ 234 (1106)
.+++++++.+++| +.++|.||||+|||||+++|+|.+.... ..+|.+..++.++... ..++.+.|+.|.
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~ 111 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETG
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcch
Confidence 4677777777765 7899999999999999999999973211 1266666665543221 113568999997
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccc
Q 001293 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1106)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1106)
+.+.+ ++.|++.......+.. ... ... .....++..+..++|.. +++
T Consensus 112 ~~l~~--~~~e~L~~~~~~~~~~----i~~--~~~------------------------~~~~~i~~~l~~~~li~-at~ 158 (334)
T 1in4_A 112 HRLNK--AVEELLYSAIEDFQID----IMI--GKG------------------------PSAKSIRIDIQPFTLVG-ATT 158 (334)
T ss_dssp GGCCH--HHHHHHHHHHHTSCCC----C-----------------------------------------CCCEEEE-EES
T ss_pred hhcCH--HHHHHHHHHHHhcccc----eee--ccC------------------------cccccccccCCCeEEEE-ecC
Confidence 65554 7888885433211100 000 000 00011222333445543 444
Q ss_pred ccccccccCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHh
Q 001293 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 372 (1106)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~ 372 (1106)
.+ ..||+|+|||+.++ .+||+.+..++.+.|++.+..
T Consensus 159 ~~-----~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~ 195 (334)
T 1in4_A 159 RS-----GLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASL 195 (334)
T ss_dssp CG-----GGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHH
T ss_pred Cc-----ccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHH
Confidence 44 35999999998554 778888888999999887653
No 267
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.67 E-value=4.2e-09 Score=117.39 Aligned_cols=72 Identities=18% Similarity=0.264 Sum_probs=43.9
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEE---cCccCCCCcc-cce-EEEEcCCCCCCC----CCCH
Q 001293 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTY---NGHDMDEFVP-QRT-AAYISQHDNHIG----EMTV 243 (1106)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~---~G~~~~~~~~-~~~-~~yv~Q~d~~~~----~lTV 243 (1106)
+.+.+|++++|+||||||||||+|+|+|...+. +|+|.+ +|........ .+. .+|+.|++.+.. .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 345689999999999999999999999999887 999998 8876543221 122 799999986654 6899
Q ss_pred HHHHH
Q 001293 244 RETLA 248 (1106)
Q Consensus 244 ~E~l~ 248 (1106)
|++.
T Consensus 245 -e~l~ 248 (307)
T 1t9h_A 245 -EELG 248 (307)
T ss_dssp -HHHG
T ss_pred -HHHH
Confidence 9883
No 268
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.66 E-value=1.5e-09 Score=122.14 Aligned_cols=74 Identities=14% Similarity=0.190 Sum_probs=61.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCC--CCCCceeEEEE---cCccCCCCcccceEEEEcCCCCCCCCCCHHHHHHHH
Q 001293 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTY---NGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFS 250 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~---~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 250 (1106)
++|++++|+||||||||||+++|+|++. |+ +|+|.+ +|..... ...+.++++ |+..+++.+|+.+++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~i~vi~~d~~~~~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~ 152 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRRVELITTDGFLHPN-QVLKERGLM-KKKGFPESYDMHRLVKFV 152 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCCEEEEEGGGGBCCH-HHHHHHTCT-TCTTSGGGBCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCeEEEEecCCccCcH-HHHHhCCEe-ecCCCCCCccHHHHHHHH
Confidence 7899999999999999999999999987 77 899999 8876422 123457788 777778899999999987
Q ss_pred HHhc
Q 001293 251 ARCQ 254 (1106)
Q Consensus 251 ~~~~ 254 (1106)
..+.
T Consensus 153 ~~l~ 156 (308)
T 1sq5_A 153 SDLK 156 (308)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6554
No 269
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.64 E-value=1.9e-09 Score=120.19 Aligned_cols=118 Identities=19% Similarity=0.188 Sum_probs=65.7
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEE---cCccCCcc-cccce-EEEEccCCCCCC----CCCHH
Q 001293 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPKKQE-TFARI-SGYCEQNDIHSP----FVTIY 959 (1106)
Q Consensus 889 ~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~-~~~~~-~gyv~q~~~~~~----~~tv~ 959 (1106)
+.+.+|++++|+|+||+|||||+|+|+|... +..|+|.+ +|...... ...+. .||++|.+.+.. .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 5567899999999999999999999999765 46799988 77654321 12222 799999987654 5789
Q ss_pred HHHH--HHHh--h----cCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 001293 960 ESLL--FSAW--L----RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1106)
Q Consensus 960 e~l~--~~~~--~----r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrq 1014 (1106)
|++. |... + +........+....+.++++.++|.+.+.... ..++.|++|
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~ 302 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKD 302 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhh
Confidence 8883 3311 1 11110011111234788999999976443221 246667665
No 270
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.63 E-value=7.8e-09 Score=115.55 Aligned_cols=112 Identities=20% Similarity=0.210 Sum_probs=78.7
Q ss_pred eeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHHHHHHHH
Q 001293 171 VSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFS 250 (1106)
Q Consensus 171 vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 250 (1106)
+++..++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+.. |. ...|.+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~-----r~--------------~a~eqL--- 151 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTF-----RA--------------AAIEQL--- 151 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTT-----CH--------------HHHHHH---
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccccc-----cH--------------HHHHHH---
Confidence 45557899999999999999999999999999775 678887665421 00 000111
Q ss_pred HHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCCChhhhH
Q 001293 251 ARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKK 330 (1106)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrq 330 (1106)
..+++.+|++. ....|||+.+
T Consensus 152 -------------------------------------------------~~~~~~~gl~~----------~~~~s~~~~~ 172 (306)
T 1vma_A 152 -------------------------------------------------KIWGERVGATV----------ISHSEGADPA 172 (306)
T ss_dssp -------------------------------------------------HHHHHHHTCEE----------ECCSTTCCHH
T ss_pred -------------------------------------------------HHHHHHcCCcE----------EecCCccCHH
Confidence 11233455542 1247899999
Q ss_pred HH---HHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHH
Q 001293 331 RV---TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQN 369 (1106)
Q Consensus 331 Rv---sia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~ 369 (1106)
++ ++++++..+|+++++|+|.. ......+++.|+++
T Consensus 173 ~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l 211 (306)
T 1vma_A 173 AVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHH
Confidence 99 89999999999999999974 34455666666554
No 271
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.63 E-value=6.3e-09 Score=122.53 Aligned_cols=53 Identities=15% Similarity=0.113 Sum_probs=49.3
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCC
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE 221 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~ 221 (1106)
..+|+|+|+.|++ ++++|+|||||||||||++|+|+++|+ +|+|.++|.++..
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~ 69 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTEAG 69 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTSCS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEccc
Confidence 3479999999999 999999999999999999999999998 9999999988754
No 272
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.61 E-value=3.8e-08 Score=116.66 Aligned_cols=178 Identities=13% Similarity=0.120 Sum_probs=105.8
Q ss_pred EeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeee-EEEEcCccCCccccc-ceEEEEccCCCCCCCCCHHH
Q 001293 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NITISGYPKKQETFA-RISGYCEQNDIHSPFVTIYE 960 (1106)
Q Consensus 883 ~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G-~i~i~g~~~~~~~~~-~~~gyv~q~~~~~~~~tv~e 960 (1106)
.|+++++-+++|+++.|.|++|+|||||+..|++... ...| .+.+-+.......+. |..+... .... +
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~--~~~g~~Vl~~s~E~s~~~l~~r~~~~~~-------~~~~-~ 261 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA--TKTNENVAIFSLEMSAQQLVMRMLCAEG-------NINA-Q 261 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH--HHSSCCEEEEESSSCHHHHHHHHHHHHH-------TCCH-H
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH--HhCCCcEEEEECCCCHHHHHHHHHHHHc-------CCCH-H
Confidence 5778887899999999999999999999999986321 0012 232222211111000 0000000 0000 0
Q ss_pred HHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHh--cCCCeEEEeCCCCCC
Q 001293 961 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGL 1038 (1106)
Q Consensus 961 ~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~--~~p~illLDEPtsgL 1038 (1106)
.++. .....++ ...+.++++.++..++.-.. ..++|.+|.+ ..++.++ .+|++|++|+++...
T Consensus 262 ------~l~~-g~l~~~~-~~~~~~a~~~l~~~~l~i~d-----~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~ 326 (454)
T 2r6a_A 262 ------NLRT-GKLTPED-WGKLTMAMGSLSNAGIYIDD-----TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQ 326 (454)
T ss_dssp ------HHHT-SCCCHHH-HHHHHHHHHHHHSSCEEEEC-----CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSC
T ss_pred ------HHhc-CCCCHHH-HHHHHHHHHHHhcCCEEEEC-----CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhc
Confidence 0111 1122222 23455566665544433221 1358999886 5667776 579999999999877
Q ss_pred C--------HHHHHHHHHHHHHHHh-CCCeEEEEec---------C--ccH-------HHHHhcCeEEEEecCC
Q 001293 1039 D--------ARAAAIVMRTVRNTVD-TGRTVVCTIH---------Q--PSI-------DIFEAFDELFLMKRGG 1085 (1106)
Q Consensus 1039 D--------~~~~~~i~~~l~~~~~-~g~tvi~~~H---------~--~~~-------~~~~~~D~v~~l~~Gg 1085 (1106)
+ ......+.+.|+.+++ .|++||+++| + |.. .+...+|.+++|+++.
T Consensus 327 ~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 327 GSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDD 400 (454)
T ss_dssp CSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETT
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccc
Confidence 4 2344677788888874 4999999999 2 431 2566799999998753
No 273
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.60 E-value=3e-11 Score=133.57 Aligned_cols=141 Identities=16% Similarity=0.157 Sum_probs=90.9
Q ss_pred EEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcc---cccceEEEEccCC-CCCCCCC
Q 001293 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFARISGYCEQND-IHSPFVT 957 (1106)
Q Consensus 882 ~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~q~~-~~~~~~t 957 (1106)
.+++++++.+++| ++|+||||+|||||+++|+|... .|.|.++|.++... ...+.+++++|.. ...|.++
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~----~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~ 107 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG----LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVI 107 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT----CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC----CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeE
Confidence 4789999999999 99999999999999999999654 26789998765321 1223455666653 3344445
Q ss_pred HHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC-
Q 001293 958 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS- 1036 (1106)
Q Consensus 958 v~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPts- 1036 (1106)
+.|++.+....+.. .. .. .+....+.. ...|||||+||+.|++++.++|++| |||+.
T Consensus 108 ~~Deid~~~~~r~~-----~~----~~------~~~~~~~~~-----l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r 165 (274)
T 2x8a_A 108 FFDEVDALCPRRSD-----RE----TG------ASVRVVNQL-----LTEMDGLEARQQVFIMAATNRPDII--DPAILR 165 (274)
T ss_dssp EEETCTTTCC------------------------CTTHHHHH-----HHHHHTCCSTTCEEEEEEESCGGGS--CHHHHS
T ss_pred eeehhhhhhcccCC-----Cc----ch------HHHHHHHHH-----HHhhhcccccCCEEEEeecCChhhC--CHhhcC
Confidence 55554332111100 00 00 011122222 1358999999999999999999975 99964
Q ss_pred -----------CCCHHHHHHHHHHH
Q 001293 1037 -----------GLDARAAAIVMRTV 1050 (1106)
Q Consensus 1037 -----------gLD~~~~~~i~~~l 1050 (1106)
--|...+..|++.+
T Consensus 166 ~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 166 PGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp TTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred cccCCeEEEeCCcCHHHHHHHHHHH
Confidence 23677777776654
No 274
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.57 E-value=2.3e-08 Score=111.76 Aligned_cols=112 Identities=18% Similarity=0.198 Sum_probs=73.4
Q ss_pred eEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcccccceEEEEccCCCCCCCCCHHHHHHHHH
Q 001293 887 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (1106)
Q Consensus 887 is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~ 966 (1106)
+++..++|++++|+|+||+||||++..|++... ...|.|.+.+.+..+. ...|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D~~r~-------------------~a~eq----- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAADTFRA-------------------AAIEQ----- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECTTCH-------------------HHHHH-----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEccccccH-------------------HHHHH-----
Confidence 455577899999999999999999999998543 1235666655432110 00111
Q ss_pred hhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHH---HHHHHHhcCCCeEEEeCCCCCCCHHHH
Q 001293 967 WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRL---TIAVELVANPSIIFMDEPTSGLDARAA 1043 (1106)
Q Consensus 967 ~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl---~iA~aL~~~p~illLDEPtsgLD~~~~ 1043 (1106)
.....+.+++.-+ ..+|+|+.+++ +|++++..+|+++|+|||.. ....
T Consensus 151 ----------------L~~~~~~~gl~~~----------~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~ 201 (306)
T 1vma_A 151 ----------------LKIWGERVGATVI----------SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTK 201 (306)
T ss_dssp ----------------HHHHHHHHTCEEE----------CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCH
T ss_pred ----------------HHHHHHHcCCcEE----------ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhH
Confidence 1233444555321 23689999999 89999999999999999974 2333
Q ss_pred HHHHHHHHHH
Q 001293 1044 AIVMRTVRNT 1053 (1106)
Q Consensus 1044 ~~i~~~l~~~ 1053 (1106)
..+++.++++
T Consensus 202 ~~l~~eL~~l 211 (306)
T 1vma_A 202 KNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 275
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.56 E-value=6e-09 Score=112.60 Aligned_cols=60 Identities=13% Similarity=0.165 Sum_probs=43.1
Q ss_pred cCCCeEEEeCCCCCC--CHHHHHHHHHHHHHH-HhCCCeEEEEecCccHH-------HHHhcCeEEEEec
Q 001293 1024 ANPSIIFMDEPTSGL--DARAAAIVMRTVRNT-VDTGRTVVCTIHQPSID-------IFEAFDELFLMKR 1083 (1106)
Q Consensus 1024 ~~p~illLDEPtsgL--D~~~~~~i~~~l~~~-~~~g~tvi~~~H~~~~~-------~~~~~D~v~~l~~ 1083 (1106)
.+|+++++|+|++.+ |+.....++..+.+. .+.|+|||+++|..... +...+|.++.|++
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 479999999999988 554444444445544 46699999999986521 4567899999975
No 276
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.56 E-value=2e-07 Score=103.89 Aligned_cols=128 Identities=17% Similarity=0.070 Sum_probs=85.0
Q ss_pred eeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcccccceEEEEccCCCCCCCCCHHHHHHH
Q 001293 885 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLF 964 (1106)
Q Consensus 885 ~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~tv~e~l~~ 964 (1106)
+++++. +|++++++|+||+||||+...|++... ...|.|.+.+.+..... ++ +. +
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~~~~~------------------~~-~q--l 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQRPA------------------AR-EQ--L 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCSSCHH------------------HH-HH--H
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcccHh------------------HH-HH--H
Confidence 677887 999999999999999999999998543 22467777665542110 00 00 0
Q ss_pred HHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC-CCCCCHHHH
Q 001293 965 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP-TSGLDARAA 1043 (1106)
Q Consensus 965 ~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEP-tsgLD~~~~ 1043 (1106)
..+.+..++.-+... ...+..+.+|.+|+.+...+++++|+||| ++++|....
T Consensus 146 -------------------~~~~~~~~l~~~~~~-------~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEVM-------DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEECC-------TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEcC-------CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 012233344322110 11244456788999988899999999999 999999888
Q ss_pred HHHHHHHHHHHhCCCeEEEEe
Q 001293 1044 AIVMRTVRNTVDTGRTVVCTI 1064 (1106)
Q Consensus 1044 ~~i~~~l~~~~~~g~tvi~~~ 1064 (1106)
..+.+..+... ...+++++.
T Consensus 200 ~~l~~~~~~~~-~~~~~lv~~ 219 (295)
T 1ls1_A 200 GELARLKEVLG-PDEVLLVLD 219 (295)
T ss_dssp HHHHHHHHHHC-CSEEEEEEE
T ss_pred HHHHHHhhhcC-CCEEEEEEe
Confidence 88877777653 344554443
No 277
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.53 E-value=8.8e-08 Score=106.73 Aligned_cols=142 Identities=15% Similarity=0.155 Sum_probs=86.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 001293 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQG 255 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 255 (1106)
++|++++++|||||||||++..|++.+.+. +| +.+.++.++. ...++.|.+...++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G---------------~~V~lv~~D~---~r~~a~eqL~~~~~--- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH---------------KKIAFITTDT---YRIAAVEQLKTYAE--- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC---------------CCEEEEECCC---SSTTHHHHHHHHHT---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC---------------CEEEEEecCc---ccchHHHHHHHHHH---
Confidence 479999999999999999999999998754 45 1355565543 13355555543221
Q ss_pred CCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCCChhhhHHHHHH
Q 001293 256 VGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG 335 (1106)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia 335 (1106)
.+|++.. . ..+ ++.-+.+++
T Consensus 159 -------------------------------------------------~~gl~~~----~------~~~-~~~l~~al~ 178 (296)
T 2px0_A 159 -------------------------------------------------LLQAPLE----V------CYT-KEEFQQAKE 178 (296)
T ss_dssp -------------------------------------------------TTTCCCC----B------CSS-HHHHHHHHH
T ss_pred -------------------------------------------------hcCCCeE----e------cCC-HHHHHHHHH
Confidence 1222210 0 012 223355555
Q ss_pred HHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHh--cCCeEEEE-EecChhHHHhhcCeEEEEcCCeEEEE
Q 001293 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI--NSGTAVIS-LLQPAPETYDLFDDIILLSDGQIVYQ 406 (1106)
Q Consensus 336 ~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~--~~~t~vi~-i~q~~~~~~~~~D~iilL~~G~iv~~ 406 (1106)
+ +.+++++|+| |+|+|+.....+.+.. ++... ...++++. .+|...++.+.+|++..+..+.++..
T Consensus 179 ~--~~~~dlvIiD--T~G~~~~~~~~~~el~-~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 179 L--FSEYDHVFVD--TAGRNFKDPQYIDELK-ETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp H--GGGSSEEEEE--CCCCCTTSHHHHHHHH-HHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred H--hcCCCEEEEe--CCCCChhhHHHHHHHH-HHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 4 4899999999 9999987665444433 33210 11223332 36666777787887766677777753
No 278
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.53 E-value=2.6e-07 Score=99.58 Aligned_cols=60 Identities=18% Similarity=0.112 Sum_probs=42.6
Q ss_pred cCCccceeecCCCCC--CHHHHHHHHHHHHHHHHhcCCeEEEEEecChhH--------HHhhcCeEEEEcC
Q 001293 340 GPALALFMDEISTGL--DSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE--------TYDLFDDIILLSD 400 (1106)
Q Consensus 340 ~~p~vllLDEptsgL--D~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~--------~~~~~D~iilL~~ 400 (1106)
.+|+++++|+|++.+ |.....+++..|.+.++..+.++++ ++|...+ +.+.+|.|+.|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~-~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIF-VSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEE-EEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEE-EecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 6655667777777776655555555 5555444 4678899999964
No 279
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.52 E-value=2.5e-08 Score=111.60 Aligned_cols=100 Identities=15% Similarity=0.211 Sum_probs=62.9
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEE---cCccCCccc--c-cceEEEEccCCC-------------
Q 001293 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPKKQET--F-ARISGYCEQNDI------------- 951 (1106)
Q Consensus 891 v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~~--~-~~~~gyv~q~~~------------- 951 (1106)
+.+|++++|+||||||||||+++|+|... +..|+|.+ +|.+..... + .+.+||++|.+.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 44689999999999999999999999776 46899999 887654311 1 135799999974
Q ss_pred ---CCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCc-cccccc
Q 001293 952 ---HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSL 999 (1106)
Q Consensus 952 ---~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~ 999 (1106)
++|.+|+ ||+.|.. ..... +....+.++++.++|. +..+..
T Consensus 244 ~~~l~~~~~~-~n~~~~~-~~~~~-----e~~~~v~~~l~~~~L~~~~~~~~ 288 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSD-CNHVD-----EPECGVKEAVENGEIAESRYENY 288 (301)
T ss_dssp HGGGSTTSSS-CCCSSTT-CCSSS-----CSSCHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCC-CcCCC-----CCCcHHHHHHHcCCCCHHHHHHH
Confidence 4677788 8887752 11111 1223578999999995 444443
No 280
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.50 E-value=4.8e-10 Score=127.64 Aligned_cols=149 Identities=15% Similarity=0.096 Sum_probs=86.8
Q ss_pred EEeeeeEEEEeCC-------eEEEEEcCCCCcHHHHHHHHhCCCCC--CeeeeEEEEcCccCCc---ccccceEEEEccC
Q 001293 882 VLLNGVSGAFRPG-------VLTALMGVSGAGKTTLMDVLAGRKTG--GYITGNITISGYPKKQ---ETFARISGYCEQN 949 (1106)
Q Consensus 882 ~~L~~is~~v~~G-------~~~al~G~nGaGKSTLl~~L~g~~~~--~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~ 949 (1106)
.+++++++.+++| +.++|+||||+|||||+++|+|.... .+..|.+..++.+... ....+.++|+.|.
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~ 111 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETG
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcch
Confidence 3567777777766 78999999999999999999985311 1345555444433211 1123568999987
Q ss_pred CCCCCCCCHHHHHHHHHhhcCCCCC--ChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 001293 950 DIHSPFVTIYESLLFSAWLRLSPEV--DSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 1027 (1106)
Q Consensus 950 ~~~~~~~tv~e~l~~~~~~r~~~~~--~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~ 1027 (1106)
+.+.+ ++.|++..... ....+. ........+.+.++.+.+.. .... +..||+|+|||+.++
T Consensus 112 ~~l~~--~~~e~L~~~~~-~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~-------- 174 (334)
T 1in4_A 112 HRLNK--AVEELLYSAIE-DFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII-------- 174 (334)
T ss_dssp GGCCH--HHHHHHHHHHH-TSCCCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE--------
T ss_pred hhcCH--HHHHHHHHHHH-hcccceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce--------
Confidence 76654 77887743221 111110 01111122333444444433 2222 246999999998654
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001293 1028 IIFMDEPTSGLDARAAAIVMRTVRNTVD 1055 (1106)
Q Consensus 1028 illLDEPtsgLD~~~~~~i~~~l~~~~~ 1055 (1106)
.+||+.+...+.+.|++.++
T Consensus 175 --------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 --------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp --------EECCCCCHHHHHHHHHHHHH
T ss_pred --------eeCCCCCHHHHHHHHHHHHH
Confidence 67777777788888877654
No 281
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.47 E-value=1.2e-08 Score=125.32 Aligned_cols=174 Identities=20% Similarity=0.206 Sum_probs=99.4
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHH
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
..+++++++.+++|+.++|+||||+|||||+++|++.+++. .-|.+.+++.+.+... ..++|++|... -.+.
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~--p~i~~~p~g~~----~~~~ 118 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENM--PRIKTVPACQG----RRIV 118 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTS--CEEEEEETTHH----HHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccC--CcEEEEecchH----HHHH
Confidence 45789999999999999999999999999999999999875 2388999888766543 35888887420 0011
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHhc-------CCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 001293 245 ETLAFSARCQGVGTRYEMLTELARREKAA-------GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1106)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1106)
|.....+.... ..+ +............ ...+.+-+. ... ...-+.+|.-....
T Consensus 119 e~~~~~~~~~~-~~r-~~~~~~~~~~~~~nl~v~~~~~~~~~~v~-------~~~-------~~~~~L~G~~~~~~---- 178 (604)
T 3k1j_A 119 EKYREKAKSQE-SVK-SSNMRLKSTVLVPKLLVDNCGRTKAPFID-------ATG-------AHAGALLGDVRHDP---- 178 (604)
T ss_dssp HHHHHHHHHHT-CC------------CCCEEEECCTTCSSCCEEE-------CTT-------CCHHHHHCEECCCC----
T ss_pred HHHHHhhccch-hhh-hhcccccccccccceeeccccCCCCCEEE-------cCC-------CCHHhcCceEEech----
Confidence 11111110000 000 0000000000000 000000000 000 00011222111111
Q ss_pred cccccCCChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHH
Q 001293 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 368 (1106)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~ 368 (1106)
....++|+|++|++..+.....++.+||+||+.. |++.....+.+.|.+
T Consensus 179 -~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 179 -FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp -C----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred -hhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 1124699999999999999999999999999998 898887777777753
No 282
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.46 E-value=3.7e-07 Score=104.08 Aligned_cols=71 Identities=20% Similarity=0.176 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcC--CCeEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCCeEEEEecCccH-----
Q 001293 1014 KRLTIAVELVAN--PSIIFMDEPTSGL----------DA---RAAAIVMRTVRNT----VDTGRTVVCTIHQPSI----- 1069 (1106)
Q Consensus 1014 qrl~iA~aL~~~--p~illLDEPtsgL----------D~---~~~~~i~~~l~~~----~~~g~tvi~~~H~~~~----- 1069 (1106)
+.+.++++++.+ |++|++|||++.+ |+ ..++.+.+.++++ .+.|+|||+++|-...
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 356678888765 9999999999998 32 1222334444443 3559999999996431
Q ss_pred ----------HHHHhcCeEEEEecC
Q 001293 1070 ----------DIFEAFDELFLMKRG 1084 (1106)
Q Consensus 1070 ----------~~~~~~D~v~~l~~G 1084 (1106)
.+...+|.++.++++
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~ 230 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRI 230 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEE
T ss_pred CCCcccCCchHhhhccceEEEEEEe
Confidence 145678988888764
No 283
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.45 E-value=8.2e-09 Score=108.35 Aligned_cols=69 Identities=19% Similarity=0.268 Sum_probs=46.2
Q ss_pred eEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCc---ccceEEEEcCCCCCCCCCCHHHHH
Q 001293 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMTVRETL 247 (1106)
Q Consensus 172 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~E~l 247 (1106)
|+.+++|++++|+||||||||||+++|+|.++ .+.+++....... ....++|++|++..++.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 56788999999999999999999999999964 2445554432221 134578999976555555554443
No 284
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.43 E-value=2.6e-07 Score=109.54 Aligned_cols=183 Identities=15% Similarity=0.132 Sum_probs=106.7
Q ss_pred cceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCH
Q 001293 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1106)
....|+++.+-+++|++++|.|+||+|||||+..+++...+. .| ..+.|++-+ ++.
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g---------------~~Vl~~s~E------~s~ 244 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN---------------ENVAIFSLE------MSA 244 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS---------------CCEEEEESS------SCH
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC---------------CcEEEEECC------CCH
Confidence 355789999889999999999999999999999999876432 23 124444432 333
Q ss_pred HHHHHHH-HHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccc
Q 001293 244 RETLAFS-ARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1106)
Q Consensus 244 ~E~l~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1106)
.+...-. +...+... .++ . .+...+.|. ..+...++.++.... .+-+ ..
T Consensus 245 ~~l~~r~~~~~~~~~~-----~~l----~-~g~l~~~~~---------------~~~~~a~~~l~~~~l---~i~d--~~ 294 (454)
T 2r6a_A 245 QQLVMRMLCAEGNINA-----QNL----R-TGKLTPEDW---------------GKLTMAMGSLSNAGI---YIDD--TP 294 (454)
T ss_dssp HHHHHHHHHHHHTCCH-----HHH----H-TSCCCHHHH---------------HHHHHHHHHHHSSCE---EEEC--CT
T ss_pred HHHHHHHHHHHcCCCH-----HHH----h-cCCCCHHHH---------------HHHHHHHHHHhcCCE---EEEC--CC
Confidence 3322110 00011100 000 0 000000000 112222333332221 1111 23
Q ss_pred CCChhhhHHHHHHHHHh--cCCccceeecCCCCCCH--------HHHHHHHHHHHHHHHhcCCeEEEEEec---------
Q 001293 323 GISGGQKKRVTTGEMMV--GPALALFMDEISTGLDS--------STTFQIVNCLRQNIHINSGTAVISLLQ--------- 383 (1106)
Q Consensus 323 ~LSGGqrqRvsia~al~--~~p~vllLDEptsgLD~--------~~~~~i~~~l~~~~~~~~~t~vi~i~q--------- 383 (1106)
++|++|.+ +.++.++ .+|+++++|+++...++ .....+.+.|+.+++..+.++|+ ++|
T Consensus 295 ~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~-~sql~r~~e~~~ 371 (454)
T 2r6a_A 295 SIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIA-LSQLSRSVEQRQ 371 (454)
T ss_dssp TCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEE-EECCCTTSTTC-
T ss_pred CCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE-EecCCcccccCC
Confidence 58999886 5566665 68999999999998743 23366778888888765555554 566
Q ss_pred ---Ch-------hHHHhhcCeEEEEcCCeE
Q 001293 384 ---PA-------PETYDLFDDIILLSDGQI 403 (1106)
Q Consensus 384 ---~~-------~~~~~~~D~iilL~~G~i 403 (1106)
|. ..+...+|.|++|..++.
T Consensus 372 ~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 372 DKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp --CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 21 157788999999987654
No 285
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.43 E-value=1.2e-07 Score=105.52 Aligned_cols=140 Identities=16% Similarity=0.158 Sum_probs=80.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCC
Q 001293 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS 971 (1106)
Q Consensus 892 ~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~ 971 (1106)
++|++++|+|+||+||||++..|++... ...| +.+.++.++.. ..+..|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~--~~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~----- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM--LEKH---------------KKIAFITTDTY---RIAAVEQLKTYA----- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH--HTTC---------------CCEEEEECCCS---STTHHHHHHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH--HhcC---------------CEEEEEecCcc---cchHHHHHHHHH-----
Confidence 4789999999999999999999998532 1123 12455555442 234455544321
Q ss_pred CCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 001293 972 PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051 (1106)
Q Consensus 972 ~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~ 1051 (1106)
+..++... ...+. ..-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+
T Consensus 158 ----------------~~~gl~~~----------~~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 158 ----------------ELLQAPLE----------VCYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp ----------------TTTTCCCC----------BCSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred ----------------HhcCCCeE----------ecCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 11122110 01222 22344555 45899999999 99999877665554443
Q ss_pred HHH---hCCCeEEE-EecCccHHHHHhcCeEEEEecCCEEEE
Q 001293 1052 NTV---DTGRTVVC-TIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1106)
Q Consensus 1052 ~~~---~~g~tvi~-~~H~~~~~~~~~~D~v~~l~~Gg~~~~ 1089 (1106)
-+. ..+.++|+ ++|... ++.+.++++..+..+| ++.
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~g-iVl 246 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQ-YIF 246 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCE-EEE
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCE-EEE
Confidence 322 11223444 378764 5777777665555543 444
No 286
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.42 E-value=5.7e-10 Score=123.56 Aligned_cols=76 Identities=25% Similarity=0.381 Sum_probs=55.0
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcc---cceEEEEcCCC-CCCCCC
Q 001293 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD-NHIGEM 241 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~l 241 (1106)
.+++++++.+++| ++|+||||||||||+++|++.+. .|.|.++|.++..... .+.+++++|.. ...+.+
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 4789999999999 99999999999999999999875 6899998876432111 12345555542 234455
Q ss_pred CHHHHHH
Q 001293 242 TVRETLA 248 (1106)
Q Consensus 242 TV~E~l~ 248 (1106)
++.|++.
T Consensus 136 ~~iDeid 142 (278)
T 1iy2_A 136 VFIDEID 142 (278)
T ss_dssp EEEETHH
T ss_pred EehhhhH
Confidence 6666663
No 287
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.38 E-value=5.8e-08 Score=100.89 Aligned_cols=43 Identities=9% Similarity=0.098 Sum_probs=35.9
Q ss_pred CChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHH
Q 001293 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 368 (1106)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~ 368 (1106)
|..-..+.+.+|++++.+|+++++| ||++|.....++++.|.+
T Consensus 146 l~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 146 LRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp GGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4333345578899999999999999 999999999999988865
No 288
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.38 E-value=9.5e-10 Score=119.98 Aligned_cols=75 Identities=25% Similarity=0.387 Sum_probs=53.8
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcc---cceEEEEcCCC-CCCCCC
Q 001293 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD-NHIGEM 241 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~l 241 (1106)
.+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++..... .+.+++++|.. ...+.+
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 4789999999999 99999999999999999999875 6889998876422111 12344555542 234455
Q ss_pred CHHHHH
Q 001293 242 TVRETL 247 (1106)
Q Consensus 242 TV~E~l 247 (1106)
++.+++
T Consensus 112 ~~~Dei 117 (254)
T 1ixz_A 112 VFIDEI 117 (254)
T ss_dssp EEEETH
T ss_pred EEehhh
Confidence 555555
No 289
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.38 E-value=5.9e-07 Score=100.05 Aligned_cols=117 Identities=18% Similarity=0.075 Sum_probs=80.5
Q ss_pred eceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHHHHHH
Q 001293 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLA 248 (1106)
Q Consensus 169 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1106)
+++++. +|++++++|+||+||||++..|+|.+.+. .|+|.+.+.+.... . ++ +.+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~~-----~-------------~~-~ql~ 146 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQRP-----A-------------AR-EQLR 146 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSCH-----H-------------HH-HHHH
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCcccH-----h-------------HH-HHHH
Confidence 678887 99999999999999999999999998765 78898877653210 0 00 0000
Q ss_pred HHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCCChhh
Q 001293 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (1106)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1106)
.+.+..|++.... + .+-.-.+
T Consensus 147 ----------------------------------------------------~~~~~~~l~~~~~---~----~~~~p~~ 167 (295)
T 1ls1_A 147 ----------------------------------------------------LLGEKVGVPVLEV---M----DGESPES 167 (295)
T ss_dssp ----------------------------------------------------HHHHHHTCCEEEC---C----TTCCHHH
T ss_pred ----------------------------------------------------HhcccCCeEEEEc---C----CCCCHHH
Confidence 0112234432210 0 0122335
Q ss_pred hHHHHHHHHHhcCCccceeecC-CCCCCHHHHHHHHHHHHH
Q 001293 329 KKRVTTGEMMVGPALALFMDEI-STGLDSSTTFQIVNCLRQ 368 (1106)
Q Consensus 329 rqRvsia~al~~~p~vllLDEp-tsgLD~~~~~~i~~~l~~ 368 (1106)
.+|.+++++...+++++|+||| ++++|......+.+..+.
T Consensus 168 l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~ 208 (295)
T 1ls1_A 168 IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEV 208 (295)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhh
Confidence 5688999988899999999999 999998877777776654
No 290
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.38 E-value=4.1e-08 Score=102.06 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 001293 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053 (1106)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~ 1053 (1106)
+...+|++++.+|+++++| ||++|......+++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 3577899999999999999 9999999999999888753
No 291
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.37 E-value=3.7e-08 Score=116.77 Aligned_cols=165 Identities=12% Similarity=0.053 Sum_probs=88.5
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHhC--CCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCC--CHHH
Q 001293 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAG--KLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEM--TVRE 245 (1106)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G--~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l--TV~E 245 (1106)
.+++.+..+..++|.|++||||||+|+.|.. .+..+ .|+|.+.+.+.+..... .-..+|.+ +|.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~---p~~v~l~liDpK~~el~--------~~~~lPhl~~~Vvt 227 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ---PEDVRFIMIDPKMLELS--------VYEGIPHLLTEVVT 227 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC---TTTEEEEEECCSSSGGG--------GGTTCTTBSSSCBC
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC---CceEEEEEECCchhhhh--------hhccCCcccceeec
Confidence 3778888999999999999999999999875 33333 46666655553321110 00111111 2222
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccc--cccccccccC
Q 001293 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD--TMVGDEMIRG 323 (1106)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d--t~vg~~~~~~ 323 (1106)
+...+.+... ....++.+ + ...++..|+.+..+ ..+. ..
T Consensus 228 d~~~a~~~L~-----~~~~Emer-----------------------------R-~~ll~~~Gv~~i~~yn~~~~----~~ 268 (512)
T 2ius_A 228 DMKDAANALR-----WCVNEMER-----------------------------R-YKLMSALGVRNLAGYNEKIA----EA 268 (512)
T ss_dssp SHHHHHHHHH-----HHHHHHHH-----------------------------H-HHHHHHTTCSSHHHHHHHHH----HH
T ss_pred CHHHHHHHHH-----HHHHHHHH-----------------------------H-HHHHHHcCCccHHHHHHHHH----HH
Confidence 2222211100 01111111 1 23466667654322 1111 24
Q ss_pred CChhhhHHH----------HHHHHHhcCCc-cceeecCCCCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEecCh
Q 001293 324 ISGGQKKRV----------TTGEMMVGPAL-ALFMDEISTGLDSSTTFQIVNCLRQNIHINS--GTAVISLLQPA 385 (1106)
Q Consensus 324 LSGGqrqRv----------sia~al~~~p~-vllLDEptsgLD~~~~~~i~~~l~~~~~~~~--~t~vi~i~q~~ 385 (1106)
+||||+||. .+++++...|. ++++||++.-+|.. ...+.+.|.++++..+ +..+|..+|..
T Consensus 269 ~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp 342 (512)
T 2ius_A 269 DRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRP 342 (512)
T ss_dssp HHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCC
T ss_pred hhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCC
Confidence 789998763 24556677887 78999999988843 3445556655554332 33444445543
No 292
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.35 E-value=5.8e-08 Score=114.32 Aligned_cols=50 Identities=20% Similarity=0.122 Sum_probs=44.6
Q ss_pred EEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccC
Q 001293 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1106)
Q Consensus 882 ~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1106)
.+|+|+|++|++ +++||+|||||||||||++|+|... +..|+|.++|.++
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~ 67 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI--PDLTLLNFRNTTE 67 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC--CCTTTCCCCCTTS
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEc
Confidence 369999999999 9999999999999999999999765 4578999998764
No 293
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.32 E-value=4.7e-08 Score=115.95 Aligned_cols=178 Identities=12% Similarity=0.071 Sum_probs=97.9
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHhC--CCCCCeeeeEEEEcCccCCcccccceEEEEccCCCCC-CCC-CHHHH
Q 001293 886 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS-PFV-TIYES 961 (1106)
Q Consensus 886 ~is~~v~~G~~~al~G~nGaGKSTLl~~L~g--~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~-~~~-tv~e~ 961 (1106)
-+++.+..+..+.|.|.+||||||+++.|.. ... ...|++.+.+.|.+...+... ..-+.+. +-. .+.+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~--~~p~~v~l~liDpK~~el~~~----~~lPhl~~~Vvtd~~~a 232 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYK--AQPEDVRFIMIDPKMLELSVY----EGIPHLLTEVVTDMKDA 232 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTT--CCTTTEEEEEECCSSSGGGGG----TTCTTBSSSCBCSHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHh--CCCceEEEEEECCchhhhhhh----ccCCcccceeecCHHHH
Confidence 3667788899999999999999999999864 121 112445554444432222110 0011111 111 12222
Q ss_pred HHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHH----------HHHHHHhcCCC-eEE
Q 001293 962 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRL----------TIAVELVANPS-IIF 1030 (1106)
Q Consensus 962 l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl----------~iA~aL~~~p~-ill 1030 (1106)
...-.++. ++.+++ .+.++..++.++.+..... ...+|+||+|+. ++|+++...|. +++
T Consensus 233 ~~~L~~~~-------~EmerR-~~ll~~~Gv~~i~~yn~~~--~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlv 302 (512)
T 2ius_A 233 ANALRWCV-------NEMERR-YKLMSALGVRNLAGYNEKI--AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVL 302 (512)
T ss_dssp HHHHHHHH-------HHHHHH-HHHHHHTTCSSHHHHHHHH--HHHHHTTCCCBCTTC---------CCBCCCCCEEEEE
T ss_pred HHHHHHHH-------HHHHHH-HHHHHHcCCccHHHHHHHH--HHHhhcCCcccccccccccchhccccccccCCcEEEE
Confidence 22111111 112222 3577777876654321000 013677776642 35666777898 789
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh----CCCeEEEEecCccHH-----HHHhc-CeEEE
Q 001293 1031 MDEPTSGLDARAAAIVMRTVRNTVD----TGRTVVCTIHQPSID-----IFEAF-DELFL 1080 (1106)
Q Consensus 1031 LDEPtsgLD~~~~~~i~~~l~~~~~----~g~tvi~~~H~~~~~-----~~~~~-D~v~~ 1080 (1106)
+||++.-+|.. ...+.+.+..+++ .|.++|++||+|+.+ +...+ +|+.+
T Consensus 303 IDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 303 VDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp EETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred EeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 99999988843 3345555555543 377999999999832 44455 45544
No 294
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.30 E-value=4.4e-07 Score=103.19 Aligned_cols=42 Identities=31% Similarity=0.428 Sum_probs=33.9
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEE-EEcCc
Q 001293 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTV-TYNGH 217 (1106)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V-~~~G~ 217 (1106)
+=+++|+++.|.||||||||||+..+++...+. .|.| ++++.
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~E 98 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDAE 98 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESS
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEecc
Confidence 468899999999999999999999999887654 4555 44443
No 295
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.29 E-value=6.9e-07 Score=101.80 Aligned_cols=31 Identities=39% Similarity=0.578 Sum_probs=27.1
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 001293 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
+-+++|+++.|.||||||||||+..++....
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999888876643
No 296
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.28 E-value=1.3e-08 Score=125.05 Aligned_cols=160 Identities=14% Similarity=0.097 Sum_probs=98.0
Q ss_pred ceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcccccceEEEEccCCC--------
Q 001293 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI-------- 951 (1106)
Q Consensus 880 ~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~-------- 951 (1106)
...+++++++.+++|+.+.|+||||+|||||+++|++.... ...|.+.+.+.+... ....++||++...
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~-~~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPT-ETLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCC-SSCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCc-ccCCeEEEeCCcccc--cCCcEEEEecchHHHHHHHHH
Confidence 34578999999999999999999999999999999996543 234788888766542 3445788876431
Q ss_pred --------------CCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHH
Q 001293 952 --------------HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLT 1017 (1106)
Q Consensus 952 --------------~~~~~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~ 1017 (1106)
.+..+++.+|+.....-......-.+ . .....+.++........ ..++|+|++|++.
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~---~~~~~~L~G~~~~~~~~-----~g~~~~g~~~~i~ 193 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-T---GAHAGALLGDVRHDPFQ-----SGGLGTPAHERVE 193 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-T---TCCHHHHHCEECCCCC---------CCCCGGGGEE
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-C---CCCHHhcCceEEechhh-----cCCcccccccccc
Confidence 00111111111100000000000000 0 00011222211111111 1358999999999
Q ss_pred HHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 001293 1018 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1052 (1106)
Q Consensus 1018 iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~ 1052 (1106)
.++...+++.+|||||... |++..+..+.+.|++
T Consensus 194 ~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 194 PGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999999998 899999998888875
No 297
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.27 E-value=3.3e-08 Score=103.67 Aligned_cols=68 Identities=22% Similarity=0.144 Sum_probs=44.0
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCc---ccccceEEEEccCCCCCCCCCHHHH
Q 001293 888 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYES 961 (1106)
Q Consensus 888 s~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~~tv~e~ 961 (1106)
|+++++|++++|+||||||||||+++|+|... .+.+++..... ....+.++|++|++..++.+++.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGA 71 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTC
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCc
Confidence 56788999999999999999999999999642 24444433221 1224457889987655544444443
No 298
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.26 E-value=2.2e-07 Score=99.73 Aligned_cols=40 Identities=23% Similarity=0.179 Sum_probs=23.3
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHh-CCCCC
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALA-GKLDP 204 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~-G~~~~ 204 (1106)
.+..+++|+.+++|++++|+||||||||||+++|+ |.+++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 45789999999999999999999999999999999 99753
No 299
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.24 E-value=1.3e-09 Score=120.71 Aligned_cols=127 Identities=18% Similarity=0.223 Sum_probs=79.0
Q ss_pred EEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcc---cccceEEEEccCCC-CCCCCC
Q 001293 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFARISGYCEQNDI-HSPFVT 957 (1106)
Q Consensus 882 ~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~q~~~-~~~~~t 957 (1106)
.+++++++.+++| ++|+||||+|||||+++|++... .|.+.+++.+.... ...+.+++++|... ..+.++
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 136 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 136 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEE
Confidence 4688999999999 89999999999999999998653 56788887543211 11223455666532 345566
Q ss_pred HHHHHHHHHhhcCCC-CCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001293 958 IYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1034 (1106)
Q Consensus 958 v~e~l~~~~~~r~~~-~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEP 1034 (1106)
+.|++......+... ....+.....+.+++ ..|||||+||+.|++++..+|++ ||++
T Consensus 137 ~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~--ld~~ 194 (278)
T 1iy2_A 137 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI--LDPA 194 (278)
T ss_dssp EEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS--SCHH
T ss_pred ehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh--CCHh
Confidence 777764322111100 000111122222222 13789999999999999999876 5655
No 300
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.22 E-value=3.3e-08 Score=105.50 Aligned_cols=59 Identities=17% Similarity=0.160 Sum_probs=40.9
Q ss_pred eEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCc-----------ccceEEEEcCC
Q 001293 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-----------PQRTAAYISQH 234 (1106)
Q Consensus 172 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-----------~~~~~~yv~Q~ 234 (1106)
++.+.+ ++++|+|||||||||||++|+|.+.|+ +|+|.++|.++.... .++.++||+|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 899999999999999999999999998 899999998762211 13568888883
No 301
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.21 E-value=1.8e-09 Score=117.81 Aligned_cols=129 Identities=18% Similarity=0.208 Sum_probs=79.4
Q ss_pred EEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcc---cccceEEEEccCCC-CCCCCC
Q 001293 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFARISGYCEQNDI-HSPFVT 957 (1106)
Q Consensus 882 ~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~q~~~-~~~~~t 957 (1106)
.+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+.... ...+.+++++|... ..+.++
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 112 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 112 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEE
Confidence 4688999999999 89999999999999999998543 46778877543211 11223455666532 345566
Q ss_pred HHHHHHHHHhhcCCC-CCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC
Q 001293 958 IYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1036 (1106)
Q Consensus 958 v~e~l~~~~~~r~~~-~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPts 1036 (1106)
+.|++......+... ....+.....+.+++. .|||||+||+.|++++..+|++ +|++.-
T Consensus 113 ~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~l~g~~~~~~~i~~a~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 113 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 172 (254)
T ss_dssp EEETHHHHHC---------CHHHHHHHHHHHH------------------HHHTCCTTCCEEEEEEESCGGG--SCGGGG
T ss_pred EehhhhhhhcccCccccccchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEccCCchh--CCHHHc
Confidence 666663322111110 0011122222222222 3788899999999999999886 677653
No 302
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.15 E-value=2.7e-07 Score=96.28 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=31.6
Q ss_pred HHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001293 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054 (1106)
Q Consensus 1016 l~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~ 1054 (1106)
...|++++.+|+++++| ||++|......+++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999888888776643
No 303
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.10 E-value=1.8e-06 Score=98.86 Aligned_cols=157 Identities=15% Similarity=0.060 Sum_probs=87.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCC-------C-CceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHHH---HHH
Q 001293 180 LTLLLGPPSSGKTTLLLALAGKLDPT-------L-KVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE---TLA 248 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~~-------~-~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E---~l~ 248 (1106)
.++|+|+||||||||++.|+|..... . ..+|.|.++|.++. ...+.|++.|.+. ..|.. ++.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~----~lve~f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPP----QIVDAFFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCCG----GGHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCH----HHHHHHHHHHH
Confidence 49999999999999999999986411 0 23789999886531 1234565554321 11211 111
Q ss_pred HHHHhcCCCchhhhhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccCCChhh
Q 001293 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (1106)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1106)
........-.- .+. .+++ .. ..+....+..+++.+++.+..--.|+++ +.-+|+|+
T Consensus 254 ~~~~aD~il~V-------------vD~-s~~~-~~--------~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~ 309 (364)
T 2qtf_A 254 EAKYSDALILV-------------IDS-TFSE-NL--------LIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDL 309 (364)
T ss_dssp GGGGSSEEEEE-------------EET-TSCH-HH--------HHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCH
T ss_pred HHHhCCEEEEE-------------EEC-CCCc-ch--------HHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchH
Confidence 00000000000 000 0000 00 0001123456677777765543445554 33478888
Q ss_pred hHHHHHH----HHH-hcCCccceeecCCCCCCHHHHHHHHHHHHHHHH
Q 001293 329 KKRVTTG----EMM-VGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 371 (1106)
Q Consensus 329 rqRvsia----~al-~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~ 371 (1106)
++|+.++ +.+ ..+|++ +|+|++|......+.+.|.+...
T Consensus 310 ~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 310 YKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp HHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 8988877 555 334444 89999999999999998877554
No 304
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.08 E-value=1.7e-07 Score=98.23 Aligned_cols=71 Identities=14% Similarity=0.078 Sum_probs=49.0
Q ss_pred eEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCc--ccceEEEEcCCCCCCCCCCHHHHHHH
Q 001293 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTVRETLAF 249 (1106)
Q Consensus 172 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~f 249 (1106)
.+..++|++++|+||||||||||+++|+|.+ |.+.++|.++.... .+...++++|++...+.+++.+++..
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 95 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMD 95 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHH
Confidence 3556799999999999999999999999985 78899987764321 11245788886555555566666544
No 305
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.01 E-value=1.4e-06 Score=93.38 Aligned_cols=38 Identities=32% Similarity=0.253 Sum_probs=22.9
Q ss_pred EEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHh-CCCC
Q 001293 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-GRKT 919 (1106)
Q Consensus 882 ~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~-g~~~ 919 (1106)
+..+++||++++|++++|+||||||||||+++|+ |...
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4689999999999999999999999999999999 8753
No 306
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.00 E-value=4.9e-06 Score=98.27 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCeEEEEecCcc
Q 001293 1010 TEQRKRLTIAVELVANPSIIFMDEP----------TSGLDARAAAIVMRTVRNTV----DTGRTVVCTIHQPS 1068 (1106)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEP----------tsgLD~~~~~~i~~~l~~~~----~~g~tvi~~~H~~~ 1068 (1106)
+++++|-.++.|....|.|||+||+ ++|.|......+.+++..+- ..+..||++||+|+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 6778888899999999999999999 44677777777777776652 24678999999985
No 307
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.99 E-value=3e-06 Score=88.32 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHH
Q 001293 331 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 370 (1106)
Q Consensus 331 Rvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~ 370 (1106)
....|++++.+|+++++| ||++|......+++.|.+..
T Consensus 129 ~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 129 PTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 356689999999999999 99999999999998876543
No 308
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.97 E-value=1e-05 Score=95.48 Aligned_cols=60 Identities=17% Similarity=0.164 Sum_probs=37.8
Q ss_pred hhhhHHHHHHHHHhcCCccceeecC----------CCCCCHHHHHHHHHHHHHHHH--hcCCeEEEEEecCh
Q 001293 326 GGQKKRVTTGEMMVGPALALFMDEI----------STGLDSSTTFQIVNCLRQNIH--INSGTAVISLLQPA 385 (1106)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEp----------tsgLD~~~~~~i~~~l~~~~~--~~~~t~vi~i~q~~ 385 (1106)
|++++|..++++....|.|||+||+ +.|.|......+.+.|..+-. ...+.+||..++..
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 5678888889999899999999999 346666655555555554321 12356666666654
No 309
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.96 E-value=2.9e-06 Score=96.40 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=26.1
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 001293 890 AFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1106)
Q Consensus 890 ~v~~G~~~al~G~nGaGKSTLl~~L~g~ 917 (1106)
-+++|+++.|.||+|+|||||+..+++.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999999999863
No 310
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.91 E-value=2.8e-07 Score=98.32 Aligned_cols=59 Identities=17% Similarity=0.130 Sum_probs=39.5
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCc-----------ccccceEEEEccC
Q 001293 888 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-----------ETFARISGYCEQN 949 (1106)
Q Consensus 888 s~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----------~~~~~~~gyv~q~ 949 (1106)
+++|.+ ++++|+|||||||||||++|+|... +..|.|.++|.+... ...++.++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI--PDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS--CCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc--cCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 566667 8999999999999999999999655 346888888876511 1234568999974
No 311
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.91 E-value=3.7e-06 Score=86.32 Aligned_cols=36 Identities=28% Similarity=0.260 Sum_probs=33.1
Q ss_pred eceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC
Q 001293 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT 205 (1106)
Q Consensus 169 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1106)
+++++.+.+| +++|+||||||||||+++|.+.+.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 6889999999 99999999999999999999987664
No 312
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.91 E-value=1.8e-06 Score=97.05 Aligned_cols=81 Identities=15% Similarity=0.018 Sum_probs=61.8
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCc-------c-----cceEEEE-cC
Q 001293 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------P-----QRTAAYI-SQ 233 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~-----~~~~~yv-~Q 233 (1106)
+++++++.+++|++++|+||||+||||++..|++.+.+. .|+|.+.+.+..... . +..+.++ +|
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~ 170 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKAN 170 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCC
Confidence 457899999999999999999999999999999998876 789999887753311 1 3458888 77
Q ss_pred CCCCCCCCCHHHHHHHH
Q 001293 234 HDNHIGEMTVRETLAFS 250 (1106)
Q Consensus 234 ~d~~~~~lTV~E~l~f~ 250 (1106)
.....+..++.+++...
T Consensus 171 ~~~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 171 KLNADPASVVFDAIKKA 187 (320)
T ss_dssp STTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 65555555666666553
No 313
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.90 E-value=6.5e-06 Score=103.52 Aligned_cols=76 Identities=12% Similarity=0.118 Sum_probs=58.6
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCeEEEE-ecCccHHHHHhcCeEEEEe
Q 001293 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCT-IHQPSIDIFEAFDELFLMK 1082 (1106)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPts-gLD~~~~~~i~~~l~~~~~~g~tvi~~-~H~~~~~~~~~~D~v~~l~ 1082 (1106)
.-+|.|+.+|..++..++.++++|++|||.. +||......+++.+.......++|+++ ||++. .+.+.++..-++.
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~~vi~ 266 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDAPLLA 266 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSCCEEE
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCCCccc
Confidence 3479999999999999999999999999996 999887766666666555445777775 88765 5667776543333
No 314
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.89 E-value=4.1e-06 Score=87.59 Aligned_cols=33 Identities=24% Similarity=0.254 Sum_probs=28.2
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC
Q 001293 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT 205 (1106)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1106)
+++++|++++|+||||||||||+++|++.+.|+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 357899999999999999999999999998664
No 315
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.88 E-value=2.1e-05 Score=89.99 Aligned_cols=61 Identities=13% Similarity=0.194 Sum_probs=48.3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe--cCcc
Q 001293 1006 SGLSTEQRKRLTIAVELVANPSIIFMD-EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI--HQPS 1068 (1106)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLD-EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~--H~~~ 1068 (1106)
..+|++++|++. +.+...++-++++| +|++|+|......+.+.+..... +..+|++. ||..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 358999998776 55555677788999 99999999998888888877653 67888888 8864
No 316
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.85 E-value=6.4e-07 Score=93.80 Aligned_cols=69 Identities=20% Similarity=0.168 Sum_probs=42.3
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcc--cccceEEEEccCCCCCCCCCHHHHH
Q 001293 888 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE--TFARISGYCEQNDIHSPFVTIYESL 962 (1106)
Q Consensus 888 s~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~--~~~~~~gyv~q~~~~~~~~tv~e~l 962 (1106)
.+..++|++++|+|+||||||||+++|++.. |.+.++|.+.... ......|+++|+....+.+++.+++
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 93 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEW 93 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHH
Confidence 3556789999999999999999999999743 6678887654321 1112346666654333333444443
No 317
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.85 E-value=1.6e-05 Score=90.94 Aligned_cols=150 Identities=13% Similarity=0.130 Sum_probs=83.0
Q ss_pred CCeE-EEEEcCCCCcHHHHHHHHhCCCCC---------CeeeeEEEEcCccCCcccccceEEEEccCCCCCCCCCHHHHH
Q 001293 893 PGVL-TALMGVSGAGKTTLMDVLAGRKTG---------GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL 962 (1106)
Q Consensus 893 ~G~~-~al~G~nGaGKSTLl~~L~g~~~~---------~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~tv~e~l 962 (1106)
.|-. ++|+|++|||||||++.|+|.... ++..|.+.++|.+. .+....|++.+.+. ..+ |..
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v---~l~DT~G~i~~lp~----~lv-e~f 248 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI---MLVDTVGFIRGIPP----QIV-DAF 248 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE---EEEECCCBCSSCCG----GGH-HHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE---EEEeCCCchhcCCH----HHH-HHH
Confidence 3444 999999999999999999995421 13568888887543 12223454443221 112 111
Q ss_pred HHH-Hhhc---------CCCCCC--hHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHH----HHH-hcC
Q 001293 963 LFS-AWLR---------LSPEVD--SETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIA----VEL-VAN 1025 (1106)
Q Consensus 963 ~~~-~~~r---------~~~~~~--~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA----~aL-~~~ 1025 (1106)
.-. ..++ ...+.. .......+.++++.+++.+..--.+... +..+|+++++++.++ +++ ..+
T Consensus 249 ~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~ 327 (364)
T 2qtf_A 249 FVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPI 327 (364)
T ss_dssp HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCE
T ss_pred HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCC
Confidence 000 0011 011111 1222233566777776644321111110 234687888888877 555 334
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001293 1026 PSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055 (1106)
Q Consensus 1026 p~illLDEPtsgLD~~~~~~i~~~l~~~~~ 1055 (1106)
|++ +|+|++|......+.+.|.+...
T Consensus 328 ~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 328 FDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp EEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred CcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 444 89999999999999998887653
No 318
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.80 E-value=8.8e-06 Score=91.80 Aligned_cols=128 Identities=13% Similarity=0.145 Sum_probs=79.0
Q ss_pred EeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcccccceEEEEccCCCCCCCCCHHHHH
Q 001293 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL 962 (1106)
Q Consensus 883 ~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~tv~e~l 962 (1106)
-|+.+.+-++||+++.|.|++|+|||||+.-++.... . .| ..+.|+.- .++..+-.
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a---~------~g---------~~Vl~fSl------Ems~~ql~ 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL---N------DD---------RGVAVFSL------EMSAEQLA 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH---H------TT---------CEEEEEES------SSCHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---H------cC---------CeEEEEeC------CCCHHHHH
Confidence 3566666799999999999999999999988875211 0 11 11333321 23332211
Q ss_pred HHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q 001293 963 LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1042 (1106)
Q Consensus 963 ~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~ 1042 (1106)
.+.......+.+..+.+ ..||.++.+|++.|...+.++++.+.|+|...+|
T Consensus 91 ------------------~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~--- 141 (338)
T 4a1f_A 91 ------------------LRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE--- 141 (338)
T ss_dssp ------------------HHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH---
T ss_pred ------------------HHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH---
Confidence 11111222222222322 1499999999999999999999999999875433
Q ss_pred HHHHHHHHHHHH-hC-CCeEEEEec
Q 001293 1043 AAIVMRTVRNTV-DT-GRTVVCTIH 1065 (1106)
Q Consensus 1043 ~~~i~~~l~~~~-~~-g~tvi~~~H 1065 (1106)
.|...++++. .. |..+|++-|
T Consensus 142 --~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 142 --QIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp --HHHHHHHHHHHHCTTEEEEEEEE
T ss_pred --HHHHHHHHHHHhcCCCCEEEEec
Confidence 3444445443 23 567777643
No 319
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.80 E-value=5.6e-06 Score=86.47 Aligned_cols=41 Identities=27% Similarity=0.070 Sum_probs=25.5
Q ss_pred ccceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 001293 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
....+++|||+.+++|++++|+|||||||||+.+.|++.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34569999999999999999999999999999999998763
No 320
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.80 E-value=1.6e-05 Score=89.73 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=34.1
Q ss_pred cceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
...-|+.+.+-++||+++.|.|+||+|||||+.-++...
T Consensus 32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 455788888889999999999999999999999888654
No 321
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.80 E-value=4.4e-06 Score=86.27 Aligned_cols=28 Identities=32% Similarity=0.525 Sum_probs=25.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCC
Q 001293 178 GRLTLLLGPPSSGKTTLLLALAGKLDPT 205 (1106)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1106)
|++++|+||||||||||+++|+|++++.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~ 28 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCcc
Confidence 5789999999999999999999998753
No 322
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.76 E-value=4.4e-07 Score=107.82 Aligned_cols=49 Identities=37% Similarity=0.570 Sum_probs=43.0
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCC
Q 001293 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE 221 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~ 221 (1106)
.+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++.+
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVE 102 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTS
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHH
Confidence 3688999999999 99999999999999999999875 6889999877643
No 323
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.71 E-value=2.4e-06 Score=92.87 Aligned_cols=62 Identities=19% Similarity=0.071 Sum_probs=46.6
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHh---CCCCCCCCceeEEE--------EcCccCCCCc----ccceEEEE
Q 001293 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALA---GKLDPTLKVSGTVT--------YNGHDMDEFV----PQRTAAYI 231 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~---G~~~~~~~~~G~V~--------~~G~~~~~~~----~~~~~~yv 231 (1106)
++++.+ ++|++++|+|||||||||++++|+ |...++ +|.|. .+|.++.... ..+.++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 444443 789999999999999999999999 988877 89998 8888764321 12567788
Q ss_pred cCC
Q 001293 232 SQH 234 (1106)
Q Consensus 232 ~Q~ 234 (1106)
+|.
T Consensus 93 ~~~ 95 (252)
T 4e22_A 93 FVS 95 (252)
T ss_dssp EEE
T ss_pred Eec
Confidence 864
No 324
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.71 E-value=1.7e-06 Score=90.46 Aligned_cols=52 Identities=23% Similarity=0.308 Sum_probs=43.3
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEE--EEcCccCC
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTV--TYNGHDMD 220 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V--~~~G~~~~ 220 (1106)
.+..++++...++|++++|+||||||||||+++|++.+. . .|.+ .++|.++.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~---~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-Q---KGKLCYILDGDNVR 65 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-H---TTCCEEEEEHHHHT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-h---cCceEEEecCchhh
Confidence 445667777778999999999999999999999999986 3 6777 88887654
No 325
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.66 E-value=2.6e-05 Score=98.06 Aligned_cols=74 Identities=12% Similarity=0.156 Sum_probs=57.5
Q ss_pred ccCCChhhhHHHHHHHHHhcCCccceeecCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001293 321 IRGISGGQKKRVTTGEMMVGPALALFMDEIST-GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1106)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEpts-gLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1106)
+.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+.... ....+++++.+++...+.+++++.
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCHHHHHHTTSC
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccHHHHHHHhcCC
Confidence 33489999999999999999999999999996 999887777776665432 133466666678877777888753
No 326
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.65 E-value=4e-06 Score=90.81 Aligned_cols=38 Identities=42% Similarity=0.517 Sum_probs=35.7
Q ss_pred eeeeceeEEEeC---CeEEEEEcCCCCcHHHHHHHHhCCCC
Q 001293 166 TILKDVSGVIKP---GRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 166 ~iL~~vs~~i~~---G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
++|+|+|+.|++ |+.++|+|++||||||+.++|++.+.
T Consensus 33 ~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 33 QILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp HHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 489999999999 99999999999999999999998764
No 327
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.64 E-value=2.7e-06 Score=92.20 Aligned_cols=51 Identities=25% Similarity=0.392 Sum_probs=34.5
Q ss_pred eeeeecc-cccccChhhHHhhccccCceEEeeeeEEEEeC---CeEEEEEcCCCCcHHHHHHHHhCC
Q 001293 855 SLTFDEV-VYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRP---GVLTALMGVSGAGKTTLMDVLAGR 917 (1106)
Q Consensus 855 ~l~f~~v-~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~---G~~~al~G~nGaGKSTLl~~L~g~ 917 (1106)
.+.++|+ +++|+ +...+|+|+|++|++ |++++|+|++||||||+.++|++.
T Consensus 17 ~l~~~~~~~~~~~------------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 17 LLETGSLLHSPFD------------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp ---------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEcceeeEEec------------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4778888 77762 123589999999999 999999999999999999999973
No 328
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.59 E-value=1.9e-05 Score=82.44 Aligned_cols=29 Identities=31% Similarity=0.383 Sum_probs=25.8
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1106)
Q Consensus 890 ~v~~G~~~al~G~nGaGKSTLl~~L~g~~ 918 (1106)
++.+|++++|+|+||||||||+++|++..
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 57899999999999999999999999865
No 329
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.58 E-value=2.2e-05 Score=97.15 Aligned_cols=133 Identities=15% Similarity=0.100 Sum_probs=72.2
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCc---ccccceEEEEccCCCCCCCCCHHHHHHH
Q 001293 888 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLF 964 (1106)
Q Consensus 888 s~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~~tv~e~l~~ 964 (1106)
|+.+++|..++|+|++|+|||||++.|++....-...|+| .+|..... ....+.+++..|...+...
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~--------- 72 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--------- 72 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET---------
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC---------
Confidence 3567889999999999999999999999643211134555 44433221 1112223332222111000
Q ss_pred HHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH
Q 001293 965 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044 (1106)
Q Consensus 965 ~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~ 1044 (1106)
......+-.||-..++ .......-..+..++++| |+.|+++.+..
T Consensus 73 -----------------------------~~~~nliDTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~ 117 (665)
T 2dy1_A 73 -----------------------------GHRVFLLDAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTER 117 (665)
T ss_dssp -----------------------------TEEEEEEECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH
T ss_pred -----------------------------CEEEEEEeCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH
Confidence 0111111123322232 122333335677889999 99999998874
Q ss_pred HHHHHHHHHHhCCCeEEEEecCccH
Q 001293 1045 IVMRTVRNTVDTGRTVVCTIHQPSI 1069 (1106)
Q Consensus 1045 ~i~~~l~~~~~~g~tvi~~~H~~~~ 1069 (1106)
.+ +.++ ..+..+|++.|..+.
T Consensus 118 ~~-~~~~---~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 118 AW-TVAE---RLGLPRMVVVTKLDK 138 (665)
T ss_dssp HH-HHHH---HTTCCEEEEEECGGG
T ss_pred HH-HHHH---HccCCEEEEecCCch
Confidence 43 3333 357888999998653
No 330
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.56 E-value=8e-05 Score=83.04 Aligned_cols=152 Identities=20% Similarity=0.210 Sum_probs=83.3
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEE-cCccCCcccccceEEEEccCCCCCC-CCCHHHHHHHHHhh
Q 001293 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI-SGYPKKQETFARISGYCEQNDIHSP-FVTIYESLLFSAWL 968 (1106)
Q Consensus 891 v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i-~g~~~~~~~~~~~~gyv~q~~~~~~-~~tv~e~l~~~~~~ 968 (1106)
+++| +++|+|++|+|||||++.|.|... .+ .+.+ +.+..+..|++.+++.... .-|.
T Consensus 6 ~r~~-~VaIvG~~nvGKSTLln~L~g~~~--------~i~s~~~--~tTr~~~~gi~~~~~~~i~~iDTp---------- 64 (301)
T 1ega_A 6 SYCG-FIAIVGRPNVGKSTLLNKLLGQKI--------SITSRKA--QTTRHRIVGIHTEGAYQAIYVDTP---------- 64 (301)
T ss_dssp CEEE-EEEEECSSSSSHHHHHHHHHTCSE--------EECCCCS--SCCSSCEEEEEEETTEEEEEESSS----------
T ss_pred ccCC-EEEEECCCCCCHHHHHHHHHCCCc--------cccCCCC--CcceeeEEEEEEECCeeEEEEECc----------
Confidence 3444 899999999999999999998542 11 1222 2234456777777543110 0011
Q ss_pred cCCCCCChHHHHHHHHHHH-----HHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHh--cCCCeEEEeCCCCCCCHH
Q 001293 969 RLSPEVDSETRKMFIDEVM-----ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDAR 1041 (1106)
Q Consensus 969 r~~~~~~~~~~~~~v~~~l-----~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~--~~p~illLDEPtsgLD~~ 1041 (1106)
....+.. ....+.+ ..+.-.+..-..+ +... +|.|++ .++..+. ..|.|+++ +.+|..
T Consensus 65 ----G~~~~~~-~~l~~~~~~~~~~~l~~~D~vl~Vv--d~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~ 129 (301)
T 1ega_A 65 ----GLHMEEK-RAINRLMNKAASSSIGDVELVIFVV--EGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNV 129 (301)
T ss_dssp ----SCCHHHH-HHHHHHHTCCTTSCCCCEEEEEEEE--ETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTC
T ss_pred ----CCCccch-hhHHHHHHHHHHHHHhcCCEEEEEE--eCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccC
Confidence 1110000 0011111 1111111111111 1123 898887 4556666 67889998 889987
Q ss_pred H-HHHHHHHHHHHHhC-C--CeEEEEecCccHHHHHhcCeEE
Q 001293 1042 A-AAIVMRTVRNTVDT-G--RTVVCTIHQPSIDIFEAFDELF 1079 (1106)
Q Consensus 1042 ~-~~~i~~~l~~~~~~-g--~tvi~~~H~~~~~~~~~~D~v~ 1079 (1106)
. ...+.+.++++.+. | ..+.+++|+-. .+.+++|.+.
T Consensus 130 ~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~ 170 (301)
T 1ega_A 130 QEKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVR 170 (301)
T ss_dssp CCHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHH
Confidence 6 66677888877653 4 36667777755 4666676654
No 331
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.54 E-value=2.9e-05 Score=79.70 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=30.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEc
Q 001293 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYN 215 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~ 215 (1106)
.+|++++|+||||||||||+++|++.+++. ..|.|.+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeecc
Confidence 368999999999999999999999987642 25666544
No 332
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.52 E-value=0.00014 Score=83.19 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CeEEEEec
Q 001293 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIH 1065 (1106)
Q Consensus 1008 LSgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H 1065 (1106)
.+..++++..+++..+.+|+++++.-..+..|... ...++.++.+...| ++|++.++
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 46788899999999999999777764334445443 34456666655445 57777665
No 333
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.52 E-value=3.9e-05 Score=78.57 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=29.9
Q ss_pred eeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 885 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1106)
Q Consensus 885 ~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~ 918 (1106)
+++++.+.+| +++|+|+||||||||+++|.+..
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 5788999999 99999999999999999998743
No 334
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.50 E-value=4.3e-05 Score=79.66 Aligned_cols=37 Identities=30% Similarity=0.173 Sum_probs=23.9
Q ss_pred eEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 001293 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1106)
Q Consensus 881 ~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~ 917 (1106)
..+++||||.+++|++++|+|++||||||+.+.|++.
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999999999999999964
No 335
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.48 E-value=2e-05 Score=84.24 Aligned_cols=41 Identities=20% Similarity=0.082 Sum_probs=35.3
Q ss_pred eEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccC
Q 001293 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219 (1106)
Q Consensus 172 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~ 219 (1106)
++..++|++++|.|++|||||||+++|+|. .|+|.+++.+.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 345579999999999999999999999997 47888888764
No 336
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.46 E-value=0.00051 Score=78.84 Aligned_cols=44 Identities=9% Similarity=0.033 Sum_probs=35.7
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCeEEEEecCcc
Q 001293 1024 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TGRTVVCTIHQPS 1068 (1106)
Q Consensus 1024 ~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~---~g~tvi~~~H~~~ 1068 (1106)
.+|.+|++||+..- |......+.+.+.+... .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45789999999876 88888888888876654 5789999999874
No 337
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.43 E-value=1.9e-05 Score=88.74 Aligned_cols=79 Identities=14% Similarity=0.130 Sum_probs=53.5
Q ss_pred EeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcc-------cc-----cceEEEE-ccC
Q 001293 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TF-----ARISGYC-EQN 949 (1106)
Q Consensus 883 ~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~-----~~~~gyv-~q~ 949 (1106)
+++++++.+++|++++|+|+||+||||++..|++... ...|+|.+.+.+..+. .+ +..++++ +|.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~--~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA--ELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 3478999999999999999999999999999998543 2346788877765321 12 3457788 555
Q ss_pred CCCCCCCCHHHHHH
Q 001293 950 DIHSPFVTIYESLL 963 (1106)
Q Consensus 950 ~~~~~~~tv~e~l~ 963 (1106)
....|..++++++.
T Consensus 172 ~~~~p~~~~~~~l~ 185 (320)
T 1zu4_A 172 LNADPASVVFDAIK 185 (320)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 43333333444443
No 338
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.42 E-value=2.2e-05 Score=82.18 Aligned_cols=69 Identities=6% Similarity=0.032 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHH--HHhcCeEEEEe
Q 001293 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI--FEAFDELFLMK 1082 (1106)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~--~~~~D~v~~l~ 1082 (1106)
+.|+.+|..++..+..+|..+..+ ++.++|.....+.+.++.. .+.+||+.+|.+. +. ...||.+++++
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~-e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLI-ENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTT-TTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhh-hcCcHhhCCEEEEEE
Confidence 567888888888888877643222 3345666666655555432 3568888888754 23 45689888885
No 339
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.42 E-value=1.9e-05 Score=85.85 Aligned_cols=57 Identities=23% Similarity=0.139 Sum_probs=44.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHh---CCCCCCeeeeEEE--------EcCccCCc----ccccceEEEEccCC
Q 001293 892 RPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGNIT--------ISGYPKKQ----ETFARISGYCEQND 950 (1106)
Q Consensus 892 ~~G~~~al~G~nGaGKSTLl~~L~---g~~~~~~~~G~i~--------i~g~~~~~----~~~~~~~gyv~q~~ 950 (1106)
++|++++|+|+|||||||++++|+ |... +..|.+. .+|.+... ..+++.+++++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 789999999999999999999999 7654 5678888 78876632 23455678887653
No 340
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.40 E-value=6.7e-05 Score=78.87 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=27.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 001293 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999876
No 341
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.38 E-value=0.0002 Score=80.33 Aligned_cols=38 Identities=29% Similarity=0.306 Sum_probs=33.2
Q ss_pred cceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 001293 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
...-|+++.+-+++|+++.|.|+||+|||||+.-++..
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 35568888888999999999999999999999888754
No 342
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.38 E-value=3.4e-05 Score=80.69 Aligned_cols=41 Identities=27% Similarity=0.130 Sum_probs=35.2
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCcc
Q 001293 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218 (1106)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 218 (1106)
.++|++++|+|+||||||||++.|++.+++. .|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEeccC
Confidence 4689999999999999999999999998765 6778776654
No 343
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.37 E-value=9e-07 Score=105.18 Aligned_cols=46 Identities=30% Similarity=0.393 Sum_probs=38.5
Q ss_pred EeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccC
Q 001293 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1106)
Q Consensus 883 ~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1106)
+++++++.+++| +.|+||||+|||||+++|++... .+.+.+++.+.
T Consensus 55 ~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~ 100 (499)
T 2dhr_A 55 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDF 100 (499)
T ss_dssp GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGG
T ss_pred hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHH
Confidence 578889999999 89999999999999999998543 45678887654
No 344
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.37 E-value=5.3e-05 Score=78.73 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=26.6
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 001293 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
..+|++++|+||||||||||++.|++.++
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34899999999999999999999999875
No 345
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.35 E-value=5.7e-05 Score=77.87 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC
Q 001293 894 GVLTALMGVSGAGKTTLMDVLAGRKT 919 (1106)
Q Consensus 894 G~~~al~G~nGaGKSTLl~~L~g~~~ 919 (1106)
|++++|+||||||||||+++|+|...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999998653
No 346
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.33 E-value=2.9e-05 Score=89.00 Aligned_cols=44 Identities=36% Similarity=0.321 Sum_probs=39.5
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEE
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTY 214 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~ 214 (1106)
..+|+++++.+++|++++|+||||||||||+++|+|.. .|++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 45899999999999999999999999999999999864 577765
No 347
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.32 E-value=6.8e-05 Score=76.19 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=31.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccC
Q 001293 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~ 219 (1106)
.+|++++|+||||||||||+++|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCccc
Confidence 468999999999999999999999874 6677777543
No 348
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.31 E-value=8.7e-05 Score=76.04 Aligned_cols=38 Identities=16% Similarity=0.244 Sum_probs=29.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcC
Q 001293 893 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (1106)
Q Consensus 893 ~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g 931 (1106)
+|++++|+||||||||||++.|++.... ...|.|....
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~tt 41 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPHTT 41 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeeccC
Confidence 6899999999999999999999985432 1345554433
No 349
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.31 E-value=0.0011 Score=73.36 Aligned_cols=71 Identities=24% Similarity=0.271 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----CCCeEEEEecCcc---HHH
Q 001293 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDAR----------AAAIVMRTVRNTVD----TGRTVVCTIHQPS---IDI 1071 (1106)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPtsgLD~~----------~~~~i~~~l~~~~~----~g~tvi~~~H~~~---~~~ 1071 (1106)
+++++.+..++.+...+|.+||+||+.+-++.. ....++..+..... .+..||+++++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 467777778888888899999999998776532 22233444443211 2356788888753 234
Q ss_pred HHhcCeEE
Q 001293 1072 FEAFDELF 1079 (1106)
Q Consensus 1072 ~~~~D~v~ 1079 (1106)
...|++.+
T Consensus 177 ~~R~~~~i 184 (297)
T 3b9p_A 177 LRRFTKRV 184 (297)
T ss_dssp HHHCCEEE
T ss_pred HhhCCeEE
Confidence 44566543
No 350
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.30 E-value=7e-05 Score=80.03 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=33.6
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccC
Q 001293 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1106)
Q Consensus 889 ~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1106)
+..++|++++|.|+||||||||+++|+|. .|.|.+.+.|.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 34578999999999999999999999986 35678877764
No 351
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.27 E-value=0.00013 Score=76.35 Aligned_cols=31 Identities=29% Similarity=0.168 Sum_probs=27.8
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 001293 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
-.+++|++++|+|+||||||||++.|++.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3567899999999999999999999999863
No 352
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.27 E-value=9.5e-05 Score=77.29 Aligned_cols=70 Identities=13% Similarity=0.116 Sum_probs=37.8
Q ss_pred CChhhhHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHH--HhhcCeEEEEc
Q 001293 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET--YDLFDDIILLS 399 (1106)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~--~~~~D~iilL~ 399 (1106)
.+.|+.+|..+++.+..+|..+.++ .+.+++.....+.+.++. ..+.++|+ -.+...+. ...||.+++|+
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~---~~~~~vv~-~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAE---QTAPYTLF-VVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHT---CCSSEEEE-ECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHh---cCCCEEEE-EechhhhcCcHhhCCEEEEEE
Confidence 3678899999999999888765544 234555555555444432 12344443 33443343 56788887774
No 353
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.27 E-value=2e-05 Score=90.33 Aligned_cols=43 Identities=33% Similarity=0.440 Sum_probs=31.7
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCC--CCCCCCceeEEE
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK--LDPTLKVSGTVT 213 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~--~~~~~~~~G~V~ 213 (1106)
..+|+++++.++ .++|+|++|||||||+++|.|. +++. +|.++
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~---~~~vT 68 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRG---SGIVT 68 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCC---SSSCC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCC---CCccc
Confidence 458999999998 9999999999999999999994 4544 45443
No 354
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.26 E-value=0.00056 Score=78.13 Aligned_cols=57 Identities=7% Similarity=0.128 Sum_probs=42.1
Q ss_pred cCCChhhhHHHHHHHHHhcCCccceee-cCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEE
Q 001293 322 RGISGGQKKRVTTGEMMVGPALALFMD-EISTGLDSSTTFQIVNCLRQNIHINSGTAVISL 381 (1106)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLD-EptsgLD~~~~~~i~~~l~~~~~~~~~t~vi~i 381 (1106)
..+|+||+|++. +.+...++-++++| ++.+++|......+++.++... .+..++++.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~ 287 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVI 287 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEE
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEE
Confidence 358999998876 55556777888999 9999999998888887776543 144555544
No 355
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.25 E-value=0.0013 Score=72.75 Aligned_cols=27 Identities=44% Similarity=0.674 Sum_probs=24.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
.++.-++|.||||+|||||++++++..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 467789999999999999999999875
No 356
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.22 E-value=0.0014 Score=74.44 Aligned_cols=34 Identities=26% Similarity=0.282 Sum_probs=28.9
Q ss_pred eecee-EEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 001293 168 LKDVS-GVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 168 L~~vs-~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
|+.+- +-+++|+++.|.||||||||||+..++..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44433 57899999999999999999999998875
No 357
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.21 E-value=0.00037 Score=78.13 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=29.8
Q ss_pred EeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhC
Q 001293 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1106)
Q Consensus 883 ~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g 916 (1106)
-|+++.+-+++|+++.|.|++|+|||||+..++.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4666777799999999999999999999988874
No 358
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.20 E-value=0.0015 Score=74.12 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=26.1
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhC
Q 001293 889 GAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1106)
Q Consensus 889 ~~v~~G~~~al~G~nGaGKSTLl~~L~g 916 (1106)
+-+++|+++.|.|++|+|||||+..++.
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999999999886
No 359
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.19 E-value=4.2e-05 Score=94.62 Aligned_cols=48 Identities=31% Similarity=0.250 Sum_probs=34.9
Q ss_pred eEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCC
Q 001293 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE 221 (1106)
Q Consensus 172 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~ 221 (1106)
|+.+++|+.++|+|++|+|||||++.|++...+. ...|+| .+|..+..
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~~d 50 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTTTD 50 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCSSC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCccccc
Confidence 3457789999999999999999999999765431 226777 56655443
No 360
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.19 E-value=0.0012 Score=74.15 Aligned_cols=36 Identities=31% Similarity=0.366 Sum_probs=29.5
Q ss_pred eeecee-EEEeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 167 ILKDVS-GVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 167 iL~~vs-~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
-|+.+- +-+++|+++.|.||||||||||+..++...
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 344432 578999999999999999999999988653
No 361
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.17 E-value=0.00015 Score=75.61 Aligned_cols=49 Identities=22% Similarity=0.253 Sum_probs=37.4
Q ss_pred EeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEE--EEcCccC
Q 001293 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI--TISGYPK 934 (1106)
Q Consensus 883 ~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i--~i~g~~~ 934 (1106)
..++.++..++|++++|+|+||||||||.++|++... ..|.+ .++|.+.
T Consensus 14 ~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 14 KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNV 64 (200)
T ss_dssp HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHH
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchh
Confidence 4455666678999999999999999999999998542 23555 7776543
No 362
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.13 E-value=8.3e-05 Score=89.41 Aligned_cols=42 Identities=33% Similarity=0.421 Sum_probs=36.7
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCcee-EEE-EcCcc
Q 001293 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSG-TVT-YNGHD 218 (1106)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G-~V~-~~G~~ 218 (1106)
.+++|++++|+|+||||||||+++|+|++.++ +| +|. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcH
Confidence 57899999999999999999999999999886 65 674 78754
No 363
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.12 E-value=4.9e-05 Score=85.11 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCC
Q 001293 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
+++|+||||||||||+++|.+.+..
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 8999999999999999999999863
No 364
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.10 E-value=0.0016 Score=73.22 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=25.9
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhC
Q 001293 889 GAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1106)
Q Consensus 889 ~~v~~G~~~al~G~nGaGKSTLl~~L~g 916 (1106)
+-+++|+++.|.|++|+|||||...++.
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHH
Confidence 4689999999999999999999998885
No 365
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.05 E-value=0.00023 Score=74.65 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=25.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 001293 892 RPGVLTALMGVSGAGKTTLMDVLAGRKT 919 (1106)
Q Consensus 892 ~~G~~~al~G~nGaGKSTLl~~L~g~~~ 919 (1106)
++|++++|+||||||||||++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999998654
No 366
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.03 E-value=0.0002 Score=72.41 Aligned_cols=27 Identities=37% Similarity=0.538 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 001293 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999864
No 367
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.03 E-value=0.00033 Score=69.50 Aligned_cols=30 Identities=37% Similarity=0.526 Sum_probs=24.4
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHhC
Q 001293 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAG 200 (1106)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G 200 (1106)
+.++.+.+| +++|+|||||||||+|.+|.-
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 344555555 999999999999999999873
No 368
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.02 E-value=7.9e-05 Score=85.39 Aligned_cols=143 Identities=13% Similarity=0.041 Sum_probs=77.0
Q ss_pred EEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcccccceEEEEccCCCC-CCCCCHHH
Q 001293 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIH-SPFVTIYE 960 (1106)
Q Consensus 882 ~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~-~~~~tv~e 960 (1106)
.+|+++++.+++|++++|+||||||||||+++|+|.. .|.+.....+.. .+...+|+++|...+ ....+...
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~~~~~~~--~~~~~lg~~~q~~~~l~dd~~~~~ 229 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLPLD--RLNFELGVAIDQFLVVFEDVKGTG 229 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSCTT--THHHHHGGGTTCSCEEETTCCCST
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEEEeccch--hHHHHHHHhcchhHHHHHHHHHHH
Confidence 4789999999999999999999999999999999843 344443121111 111224556665431 12222111
Q ss_pred HHHHHHhhcCCCCCChHHHHHHHHHHHHH---cCCcc-cc---cccc--C--CCCCCCCCHHHHHHHHHHHHHhcCCCeE
Q 001293 961 SLLFSAWLRLSPEVDSETRKMFIDEVMEL---VELNP-LR---QSLV--G--LPGVSGLSTEQRKRLTIAVELVANPSII 1029 (1106)
Q Consensus 961 ~l~~~~~~r~~~~~~~~~~~~~v~~~l~~---~~l~~-~~---~~~~--g--~~g~~~LSgGqrqrl~iA~aL~~~p~il 1029 (1106)
.+ .|.............+...++- +-+.. .. +.+. + ......+++|.++|+..+++++..|+++
T Consensus 230 ~~-----~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLl 304 (377)
T 1svm_A 230 GE-----SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLK 304 (377)
T ss_dssp TT-----TTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHH
T ss_pred HH-----HhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeE
Confidence 00 0100000000001112233321 00110 00 1000 0 0013458899999999888888888876
Q ss_pred E-EeCCCC
Q 001293 1030 F-MDEPTS 1036 (1106)
Q Consensus 1030 l-LDEPts 1036 (1106)
+ ||+|+.
T Consensus 305 iyLd~~~~ 312 (377)
T 1svm_A 305 HCLERSEF 312 (377)
T ss_dssp HHHHTCTH
T ss_pred EEEeCCHH
Confidence 5 999887
No 369
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.02 E-value=0.00033 Score=69.51 Aligned_cols=28 Identities=29% Similarity=0.698 Sum_probs=23.6
Q ss_pred eEEEEeCCeEEEEEcCCCCcHHHHHHHHh
Q 001293 887 VSGAFRPGVLTALMGVSGAGKTTLMDVLA 915 (1106)
Q Consensus 887 is~~v~~G~~~al~G~nGaGKSTLl~~L~ 915 (1106)
.++.+.+| +++|+|||||||||++++|.
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34556665 89999999999999999986
No 370
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.94 E-value=0.0025 Score=73.05 Aligned_cols=29 Identities=31% Similarity=0.320 Sum_probs=25.2
Q ss_pred CCe--EEEEEcCCCCcHHHHHHHHhCCCCCC
Q 001293 177 PGR--LTLLLGPPSSGKTTLLLALAGKLDPT 205 (1106)
Q Consensus 177 ~G~--~~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1106)
++. .++|.||+|+|||||++.+++.+.+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 345 89999999999999999999987653
No 371
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.92 E-value=0.0005 Score=80.81 Aligned_cols=70 Identities=16% Similarity=0.209 Sum_probs=47.4
Q ss_pred cCCCeEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcCeEEE-EecCCEEEEecCCC
Q 001293 1024 ANPSIIFMDEPTSGLDA-RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL-MKRGGQEIYVGPLG 1094 (1106)
Q Consensus 1024 ~~p~illLDEPtsgLD~-~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~-l~~Gg~~~~~g~~g 1094 (1106)
.+|++||+||+..-.+. .++..+...+..+.+.|+.||+++|.+..++....+++.- + ..|.++..+++.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~-~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRF-QMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHH-HSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhc-cCCeEEEeCCCC
Confidence 38999999999887664 6778888999888888999999999854321111122211 2 235666666664
No 372
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.85 E-value=0.0001 Score=83.73 Aligned_cols=49 Identities=20% Similarity=0.126 Sum_probs=41.1
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCc
Q 001293 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH 217 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~ 217 (1106)
.+++++++.+++|.+++|+|+||+|||||++.|+|.+.+. .|+|.+-+.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~~ 92 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIAV 92 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEee
Confidence 4778888888999999999999999999999999988664 566655443
No 373
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.81 E-value=0.00046 Score=71.61 Aligned_cols=28 Identities=25% Similarity=0.519 Sum_probs=25.1
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 891 FRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1106)
Q Consensus 891 v~~G~~~al~G~nGaGKSTLl~~L~g~~ 918 (1106)
..+|++++|+||||||||||++.|++..
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3489999999999999999999999754
No 374
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.81 E-value=0.00029 Score=80.18 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=34.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccC
Q 001293 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~ 219 (1106)
+++.+++|+|+||||||||++.|+|.+.+. .|+|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEeecC
Confidence 467899999999999999999999988765 67777766543
No 375
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.79 E-value=0.0021 Score=74.68 Aligned_cols=25 Identities=40% Similarity=0.422 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 001293 893 PGVLTALMGVSGAGKTTLMDVLAGR 917 (1106)
Q Consensus 893 ~G~~~al~G~nGaGKSTLl~~L~g~ 917 (1106)
++.+++++|++|+||||++..|++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999963
No 376
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.78 E-value=0.00026 Score=73.81 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=31.1
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCcc
Q 001293 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1106)
Q Consensus 891 v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1106)
.++|++++|+|+||||||||++.|++... ...|.+.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~--~~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR--EQGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHh--hcCCeEEEeccC
Confidence 56899999999999999999999998532 123456555443
No 377
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.77 E-value=0.00026 Score=80.08 Aligned_cols=51 Identities=16% Similarity=0.239 Sum_probs=43.4
Q ss_pred ceeeeecccccccChhhHHhhccccCceEEee--------------eeEEEEeCCeEEEEEcCCCCcHHHHHHHHhC
Q 001293 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLN--------------GVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1106)
Q Consensus 854 ~~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~--------------~is~~v~~G~~~al~G~nGaGKSTLl~~L~g 916 (1106)
..+.|+|+++.|+. .+..|+ |+++.+.+|+.++|+|++|+|||||++.|++
T Consensus 132 ~ri~Fe~ltp~yP~------------er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 132 NKILFENLTPLHAN------------SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp TSCCTTTSCEESCC------------SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHH
T ss_pred CCceeccccccCCC------------CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHH
Confidence 45788899887763 234677 8999999999999999999999999999986
No 378
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.74 E-value=0.00058 Score=69.21 Aligned_cols=37 Identities=27% Similarity=0.326 Sum_probs=29.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccC
Q 001293 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1106)
Q Consensus 892 ~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1106)
.+|++++|+|+|||||||+.+.|++.. |.+.+++-+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCccc
Confidence 468999999999999999999999742 4566776443
No 379
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.73 E-value=0.00031 Score=71.57 Aligned_cols=40 Identities=33% Similarity=0.409 Sum_probs=31.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCcee--EEEEcCccC
Q 001293 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSG--TVTYNGHDM 219 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G--~V~~~G~~~ 219 (1106)
++|++++|+|++||||||+++.|++.+.+ .| .|.++|..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~----~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh----CCCcEEEECChHH
Confidence 47999999999999999999999998754 34 566666543
No 380
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.72 E-value=0.00022 Score=83.84 Aligned_cols=47 Identities=9% Similarity=0.079 Sum_probs=32.1
Q ss_pred cCCccceeecCCCCCCH-HHHHHHHHHHHHHHHhcCCeEEEEEecChhH
Q 001293 340 GPALALFMDEISTGLDS-STTFQIVNCLRQNIHINSGTAVISLLQPAPE 387 (1106)
Q Consensus 340 ~~p~vllLDEptsgLD~-~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~ 387 (1106)
.++++||+||+..-.+. .+...++..+..+. ..+..+|++.+.+..+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~-~~~~~iIitt~~~~~~ 240 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELH-DSGKQIVICSDREPQK 240 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHH-TTTCEEEEEESSCGGG
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHH-HCCCeEEEEECCCHHH
Confidence 37899999999887764 56677778877654 3455666655544433
No 381
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.70 E-value=0.0023 Score=71.12 Aligned_cols=29 Identities=45% Similarity=0.498 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCCC
Q 001293 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPT 205 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1106)
|...++|.||||+|||||.++|++.+...
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 45689999999999999999999987653
No 382
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.69 E-value=0.00044 Score=79.06 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=23.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCC
Q 001293 892 RPGVLTALMGVSGAGKTTLMDVLAGR 917 (1106)
Q Consensus 892 ~~G~~~al~G~nGaGKSTLl~~L~g~ 917 (1106)
.++..+.|.||+|+|||||++.+++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45778999999999999999999974
No 383
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.68 E-value=0.00057 Score=72.94 Aligned_cols=38 Identities=24% Similarity=0.229 Sum_probs=27.9
Q ss_pred eeeceeEEEe---CCeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 001293 167 ILKDVSGVIK---PGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 167 iL~~vs~~i~---~G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
=|.++|+.+. +|.+++|.||+||||||+++.|+..+.+
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4777888777 9999999999999999999999998763
No 384
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.65 E-value=0.0012 Score=83.50 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=27.3
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1106)
Q Consensus 889 ~~v~~G~~~al~G~nGaGKSTLl~~L~g~~ 918 (1106)
+.+++|+.+.|+||+|+|||||+++|++..
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 457899999999999999999999999865
No 385
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.64 E-value=0.00017 Score=76.51 Aligned_cols=34 Identities=32% Similarity=0.383 Sum_probs=28.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC---CCCCCceeEEEE
Q 001293 178 GRLTLLLGPPSSGKTTLLLALAGKL---DPTLKVSGTVTY 214 (1106)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~---~~~~~~~G~V~~ 214 (1106)
+.+++|+|||||||||+.++|++.+ .++ +|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d---~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLD---SGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEE---HHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc---Ccceee
Confidence 4689999999999999999999876 333 677765
No 386
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.60 E-value=0.0015 Score=76.77 Aligned_cols=70 Identities=20% Similarity=0.219 Sum_probs=38.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCC-------C--CCceeEEEEcCccCCCCc---ccceEEEEcCCCCCCCCCCHHHH
Q 001293 179 RLTLLLGPPSSGKTTLLLALAGKLDP-------T--LKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMTVRET 246 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~~-------~--~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~E~ 246 (1106)
-.++|+|+||+|||||++.|+|.... + -..+|.+.++|.++.-.. .++..++.+|....+..+++.++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 47999999999999999999998531 0 023689999997642111 12333444343333444444444
Q ss_pred HH
Q 001293 247 LA 248 (1106)
Q Consensus 247 l~ 248 (1106)
+.
T Consensus 261 i~ 262 (439)
T 1mky_A 261 IE 262 (439)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 387
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.58 E-value=0.0012 Score=83.53 Aligned_cols=32 Identities=41% Similarity=0.559 Sum_probs=29.0
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 001293 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
+.+++|+.++|+||||+|||||+++|+|.+..
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 35789999999999999999999999999754
No 388
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.58 E-value=0.00035 Score=84.34 Aligned_cols=46 Identities=26% Similarity=0.468 Sum_probs=39.2
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcC
Q 001293 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG 216 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G 216 (1106)
+++++++.+ +|+.++|+||||+|||||+++|++.+.+. .|.|.++|
T Consensus 98 ~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 98 AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 566677766 89999999999999999999999998765 78877655
No 389
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.57 E-value=0.0037 Score=72.64 Aligned_cols=37 Identities=27% Similarity=0.131 Sum_probs=30.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcC
Q 001293 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG 216 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G 216 (1106)
++.+++++||+||||||++..|++.+.+. .++|.+-+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVllv~ 132 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGLVA 132 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEe
Confidence 68999999999999999999999988764 45665543
No 390
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.57 E-value=0.0002 Score=80.18 Aligned_cols=38 Identities=21% Similarity=0.181 Sum_probs=30.9
Q ss_pred eEEeeeeEEEEeCCe------EEEEEcCCCCcHHHHHHHHhCCC
Q 001293 881 LVLLNGVSGAFRPGV------LTALMGVSGAGKTTLMDVLAGRK 918 (1106)
Q Consensus 881 ~~~L~~is~~v~~G~------~~al~G~nGaGKSTLl~~L~g~~ 918 (1106)
.+.|++++..|..+. ++||+|+||||||||+++|.+..
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345667777676665 99999999999999999999853
No 391
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.55 E-value=0.0022 Score=64.77 Aligned_cols=27 Identities=37% Similarity=0.687 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1106)
Q Consensus 892 ~~G~~~al~G~nGaGKSTLl~~L~g~~ 918 (1106)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999999853
No 392
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.55 E-value=0.00082 Score=67.79 Aligned_cols=26 Identities=35% Similarity=0.317 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 893 PGVLTALMGVSGAGKTTLMDVLAGRK 918 (1106)
Q Consensus 893 ~G~~~al~G~nGaGKSTLl~~L~g~~ 918 (1106)
.|.+++|+|+|||||||+.++|++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999854
No 393
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.53 E-value=0.001 Score=69.39 Aligned_cols=30 Identities=27% Similarity=0.285 Sum_probs=26.8
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1106)
Q Consensus 889 ~~v~~G~~~al~G~nGaGKSTLl~~L~g~~ 918 (1106)
-.+++|.+++|+|++||||||+.+.|++..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 357789999999999999999999999854
No 394
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.53 E-value=0.00044 Score=72.59 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=35.2
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCcee--EEEEcCccC
Q 001293 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSG--TVTYNGHDM 219 (1106)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G--~V~~~G~~~ 219 (1106)
+++|.+++|+|++||||||+.+.|++.+.+. .| .+.++|..+
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGDNI 65 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECChHH
Confidence 5688999999999999999999999998754 67 777776443
No 395
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.51 E-value=0.0023 Score=64.59 Aligned_cols=27 Identities=41% Similarity=0.662 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
++|..++|+|+||+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999999974
No 396
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.48 E-value=0.00075 Score=77.13 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=25.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 001293 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
.+++.++|.||+|+|||||++.+++.+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45779999999999999999999988643
No 397
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.45 E-value=0.0075 Score=65.05 Aligned_cols=32 Identities=31% Similarity=0.613 Sum_probs=23.0
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 001293 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1106)
Q Consensus 884 L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~ 917 (1106)
++++++.+++| +.|.||+|+|||||+++|++.
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHH
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHH
Confidence 44555555555 889999999999999999974
No 398
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.44 E-value=0.0015 Score=68.30 Aligned_cols=28 Identities=29% Similarity=0.698 Sum_probs=23.4
Q ss_pred eEEEEeCCeEEEEEcCCCCcHHHHHHHHh
Q 001293 887 VSGAFRPGVLTALMGVSGAGKTTLMDVLA 915 (1106)
Q Consensus 887 is~~v~~G~~~al~G~nGaGKSTLl~~L~ 915 (1106)
.++.+.+| +++|+|||||||||++++|.
T Consensus 17 ~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 34556665 89999999999999999885
No 399
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.42 E-value=0.00049 Score=82.74 Aligned_cols=42 Identities=38% Similarity=0.520 Sum_probs=33.1
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeee-EEE-EcCcc
Q 001293 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NIT-ISGYP 933 (1106)
Q Consensus 890 ~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G-~i~-i~g~~ 933 (1106)
.+++|++++|+|+||||||||+++|+|.... ..| .+. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~--~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME--MGGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT--TCSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc--cCCceEEEECCcH
Confidence 3679999999999999999999999996532 233 564 77754
No 400
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.40 E-value=0.0016 Score=67.93 Aligned_cols=29 Identities=34% Similarity=0.495 Sum_probs=23.6
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHh
Q 001293 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALA 199 (1106)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~ 199 (1106)
+.++.+.+ .+++|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 34455555 499999999999999999985
No 401
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.40 E-value=0.0033 Score=69.89 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.4
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1106)
Q Consensus 890 ~v~~G~~~al~G~nGaGKSTLl~~L~g~~ 918 (1106)
.++++..+.|.||+|+|||||.++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 35678889999999999999999999743
No 402
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.35 E-value=0.0022 Score=65.80 Aligned_cols=34 Identities=38% Similarity=0.444 Sum_probs=20.9
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 001293 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 788999998887 5689999999999999999974
No 403
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.32 E-value=0.0011 Score=69.04 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=26.3
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 001293 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
...+|.+++|+||||||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346889999999999999999999998764
No 404
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.31 E-value=0.012 Score=62.65 Aligned_cols=42 Identities=5% Similarity=0.096 Sum_probs=28.7
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCeEEEEec
Q 001293 1024 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGRTVVCTIH 1065 (1106)
Q Consensus 1024 ~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~--~g~tvi~~~H 1065 (1106)
.+|+++++..+.+.++......+...++.... ...+||+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 46899999998888888766665555443321 1258888888
No 405
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.30 E-value=0.0063 Score=64.88 Aligned_cols=66 Identities=17% Similarity=0.107 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhcC
Q 001293 1009 STEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1076 (1106)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPts-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D 1076 (1106)
+.|.-.+.. ...+.+-++|++||+-. ++|......+++.+......-+++++++--+.....++|+
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 445554443 33578889999999976 6877766444554444433335666665544434445554
No 406
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.30 E-value=0.0016 Score=66.63 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=26.5
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 001293 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
++|+..++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56788888999999999999999999999876
No 407
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.28 E-value=0.00042 Score=74.10 Aligned_cols=66 Identities=14% Similarity=0.113 Sum_probs=40.0
Q ss_pred hhhhHHHHHHHHHhcCCccceeecCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001293 326 GGQKKRVTTGEMMVGPALALFMDEIST-GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1106)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEpts-gLD~~~~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1106)
.|.-.+.. ...+.+-+++++||.-. ++|.......++.+..... ...+++++.+.+.....++|+.
T Consensus 163 pg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 163 VGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp HHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCCHHHHHHTTS
T ss_pred HHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEecCCCHHHHHHHcCC
Confidence 35444442 33578899999999976 6877766555554443221 2346666666666665566653
No 408
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.28 E-value=0.0016 Score=66.21 Aligned_cols=40 Identities=30% Similarity=0.248 Sum_probs=30.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCcc
Q 001293 179 RLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 218 (1106)
.+++|+|++|||||||++.|.+.+.+....-|.|..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5889999999999999999999865432235777776654
No 409
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.26 E-value=0.0096 Score=69.92 Aligned_cols=38 Identities=29% Similarity=0.571 Sum_probs=32.7
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
..-|+.+.+-+++|+++.|.|+||+|||||+.-++...
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34577777779999999999999999999999888764
No 410
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.26 E-value=0.0034 Score=64.36 Aligned_cols=49 Identities=24% Similarity=0.324 Sum_probs=28.0
Q ss_pred EEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC------CCCeeeeEEEEcC
Q 001293 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK------TGGYITGNITISG 931 (1106)
Q Consensus 882 ~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~------~~~~~~G~i~i~g 931 (1106)
.+++++++..++. .++|+|++|+|||||++.+.+.. +.+...+.+.++|
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~ 66 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGN 66 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETT
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECC
Confidence 3788999988877 78999999999999999999732 2233456666665
No 411
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.23 E-value=0.0011 Score=68.70 Aligned_cols=35 Identities=34% Similarity=0.470 Sum_probs=30.2
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 001293 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
.+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 47788888888875 689999999999999999874
No 412
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.19 E-value=0.00055 Score=78.25 Aligned_cols=77 Identities=14% Similarity=0.127 Sum_probs=36.3
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccCCCCcccceEEEEcCCCCCCCCCCHH
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
+.+++++++.| +|+|++|+|||||++.|.|..... .|.+..++.............+..|.+.....+++.
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~---~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~ 100 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP---ERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVV 100 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------------------CEEEEEEEEC----CEEEEEEEE
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCC---CCcccCCCcccCCceeEEEEEEEeecCCcccceEEE
Confidence 34778888877 999999999999999998875433 444443433221110012234444544333345666
Q ss_pred HHHHHH
Q 001293 245 ETLAFS 250 (1106)
Q Consensus 245 E~l~f~ 250 (1106)
++.-++
T Consensus 101 DTpG~g 106 (361)
T 2qag_A 101 DTPGYG 106 (361)
T ss_dssp C-----
T ss_pred Eecccc
Confidence 665553
No 413
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.16 E-value=0.041 Score=62.45 Aligned_cols=30 Identities=43% Similarity=0.628 Sum_probs=26.4
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+=+++|+++.|.||||+|||||...++...
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999998887654
No 414
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.11 E-value=0.0015 Score=66.95 Aligned_cols=30 Identities=40% Similarity=0.514 Sum_probs=26.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCCCC
Q 001293 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPT 205 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1106)
++|.++.|+|++||||||+.+.|+..+.+.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 478999999999999999999999987653
No 415
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.10 E-value=0.0017 Score=75.40 Aligned_cols=46 Identities=24% Similarity=0.080 Sum_probs=39.6
Q ss_pred eceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccC
Q 001293 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219 (1106)
Q Consensus 169 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~ 219 (1106)
+++++. +|++++++|++||||||++..|++.+.+. .|+|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeeccc
Confidence 567777 89999999999999999999999999876 68888876553
No 416
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.10 E-value=0.0026 Score=67.72 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=25.8
Q ss_pred EeeeeEEEEe---CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 883 LLNGVSGAFR---PGVLTALMGVSGAGKTTLMDVLAGRK 918 (1106)
Q Consensus 883 ~L~~is~~v~---~G~~~al~G~nGaGKSTLl~~L~g~~ 918 (1106)
-|.++++.+. +|.+++|.|++||||||+++.|+...
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3677777776 89999999999999999999999753
No 417
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.09 E-value=0.016 Score=61.66 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCC
Q 001293 180 LTLLLGPPSSGKTTLLLALAGKLDPT 205 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1106)
.++|+|++|+|||||++.|+|.....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~ 56 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFH 56 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCc
Confidence 57999999999999999999986543
No 418
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.01 E-value=0.0016 Score=70.40 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=33.1
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCccC
Q 001293 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219 (1106)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~ 219 (1106)
..+++.++.|+|+|||||||+.+.|+..+. .|.+.++|..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-----GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-----TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-----CCcEEEecHHH
Confidence 456788999999999999999999998874 24566777544
No 419
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.99 E-value=0.0029 Score=72.54 Aligned_cols=31 Identities=23% Similarity=0.360 Sum_probs=26.1
Q ss_pred eeEEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 001293 171 VSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 171 vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
+-+.++.|..++|+|+||+|||||+++|+|.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3446678889999999999999999999987
No 420
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.99 E-value=0.0016 Score=74.11 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCC
Q 001293 892 RPGVLTALMGVSGAGKTTLMDVLAGR 917 (1106)
Q Consensus 892 ~~G~~~al~G~nGaGKSTLl~~L~g~ 917 (1106)
+++.+++|+|++|||||||++.|+|.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999974
No 421
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.98 E-value=0.0048 Score=72.38 Aligned_cols=38 Identities=21% Similarity=0.416 Sum_probs=29.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC----------CCeeeeEEEEcCcc
Q 001293 896 LTALMGVSGAGKTTLMDVLAGRKT----------GGYITGNITISGYP 933 (1106)
Q Consensus 896 ~~al~G~nGaGKSTLl~~L~g~~~----------~~~~~G~i~i~g~~ 933 (1106)
.++|+|+||+|||||++.|+|... ..+..|.+.++|.+
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 689999999999999999999632 11345888888864
No 422
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.98 E-value=0.0088 Score=65.45 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=23.5
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 891 FRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1106)
Q Consensus 891 v~~G~~~al~G~nGaGKSTLl~~L~g~~ 918 (1106)
+.++.-+.|.||+|+|||||.++|+...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3456678999999999999999999643
No 423
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.94 E-value=0.0072 Score=70.87 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=28.2
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhC
Q 001293 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1106)
Q Consensus 884 L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g 916 (1106)
|+.+.+-+.+|+++.|.|++|+|||||..-++.
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 555555689999999999999999999888774
No 424
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.94 E-value=0.001 Score=75.43 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=32.7
Q ss_pred EEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 001293 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1106)
Q Consensus 882 ~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~ 917 (1106)
.+++++++.+.+|.+++|+|++|||||||++.|++.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 467888888999999999999999999999999874
No 425
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.86 E-value=0.0038 Score=63.41 Aligned_cols=26 Identities=42% Similarity=0.460 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCC
Q 001293 892 RPGVLTALMGVSGAGKTTLMDVLAGR 917 (1106)
Q Consensus 892 ~~G~~~al~G~nGaGKSTLl~~L~g~ 917 (1106)
++|++++|+|++||||||+.+.|++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999999974
No 426
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.86 E-value=0.0012 Score=73.17 Aligned_cols=46 Identities=26% Similarity=0.138 Sum_probs=38.0
Q ss_pred ec-eeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCcc
Q 001293 169 KD-VSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218 (1106)
Q Consensus 169 ~~-vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 218 (1106)
++ +++..+ |++++++|++|+||||++..|++.+.+. .|+|.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEecC
Confidence 45 777766 9999999999999999999999998765 5677776544
No 427
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.85 E-value=0.0075 Score=60.15 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 001293 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
.++|+|++|+|||||++.|+|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999643
No 428
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.83 E-value=0.012 Score=69.09 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=29.6
Q ss_pred EeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhC
Q 001293 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1106)
Q Consensus 883 ~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g 916 (1106)
-|+.+.+-+++|+++.|.|++|+|||||..-++.
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~ 222 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQ 222 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 3566666799999999999999999999988875
No 429
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.81 E-value=0.0009 Score=75.35 Aligned_cols=37 Identities=27% Similarity=0.460 Sum_probs=31.9
Q ss_pred eeeceeEEEeCCeE--EEEEcCCCCcHHHHHHHHhCCCC
Q 001293 167 ILKDVSGVIKPGRL--TLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 167 iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
++++++..+++|+. ++|+||+||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 56667777778877 99999999999999999999864
No 430
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.76 E-value=0.004 Score=65.72 Aligned_cols=56 Identities=21% Similarity=0.097 Sum_probs=37.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC-CCeeeeEEEE--------cCccCCc----ccccceEEEEccC
Q 001293 894 GVLTALMGVSGAGKTTLMDVLAGRKT-GGYITGNITI--------SGYPKKQ----ETFARISGYCEQN 949 (1106)
Q Consensus 894 G~~~al~G~nGaGKSTLl~~L~g~~~-~~~~~G~i~i--------~g~~~~~----~~~~~~~gyv~q~ 949 (1106)
+.+++|+|++||||||+.+.|++... .-+..|.+.. +|.+... ..+.+.+|+++|+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 56899999999999999999997421 1134576665 5665432 1234456777765
No 431
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.75 E-value=0.0063 Score=68.15 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 001293 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
++..+.|.||+|+|||||+++|++.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 345789999999999999999998764
No 432
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.75 E-value=0.015 Score=63.64 Aligned_cols=28 Identities=43% Similarity=0.666 Sum_probs=24.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 001293 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
.++.-++|.||+|+|||||+++++..+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4566799999999999999999998764
No 433
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.70 E-value=0.0044 Score=64.53 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=25.1
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1106)
Q Consensus 890 ~v~~G~~~al~G~nGaGKSTLl~~L~g~~ 918 (1106)
...+|.+++|+|+||||||||.+.|+...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35689999999999999999999998643
No 434
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.70 E-value=0.0029 Score=71.57 Aligned_cols=33 Identities=36% Similarity=0.641 Sum_probs=31.4
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
|+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 789999999999999999999999999999875
No 435
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.67 E-value=0.004 Score=69.22 Aligned_cols=25 Identities=36% Similarity=0.563 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 178 GRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+..++|+|+||+|||||++.|.|..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 4489999999999999999999973
No 436
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.67 E-value=0.0042 Score=64.43 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 001293 180 LTLLLGPPSSGKTTLLLALAG 200 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G 200 (1106)
.++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 437
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.67 E-value=0.0024 Score=72.96 Aligned_cols=46 Identities=24% Similarity=0.335 Sum_probs=31.5
Q ss_pred ceeeeecccccccChhhHHhhccccCceEEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1106)
Q Consensus 854 ~~l~f~~v~y~v~~~~~~~~~~~~~~~~~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~ 918 (1106)
+.+.|+++...+. ++.+++++++.| +|+|++|+|||||++.|+|..
T Consensus 16 ~~v~~~~l~~~~~-------------~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 16 GYVGFANLPNQVH-------------RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp -----CCHHHHHH-------------THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred ceEEeccchHHhC-------------CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 4577777765442 223577888765 999999999999999998753
No 438
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.65 E-value=0.01 Score=59.05 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 001293 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1106)
Q Consensus 896 ~~al~G~nGaGKSTLl~~L~g~~ 918 (1106)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 439
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.65 E-value=0.16 Score=57.46 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=24.8
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhC
Q 001293 890 AFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1106)
Q Consensus 890 ~v~~G~~~al~G~nGaGKSTLl~~L~g 916 (1106)
-+++|+++.|.|++|+|||||...++.
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999999988874
No 440
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.64 E-value=0.002 Score=77.82 Aligned_cols=48 Identities=23% Similarity=0.338 Sum_probs=37.4
Q ss_pred EeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCcc
Q 001293 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1106)
Q Consensus 883 ~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1106)
+++++++.+ +|+.+.|+||||+|||||+++|++... ...|.|.++|..
T Consensus 98 ~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~~ 145 (543)
T 3m6a_A 98 AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGVR 145 (543)
T ss_dssp HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC--
T ss_pred HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEecccc
Confidence 566677777 899999999999999999999998543 346777776643
No 441
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.63 E-value=0.0089 Score=66.92 Aligned_cols=45 Identities=4% Similarity=0.080 Sum_probs=34.3
Q ss_pred hcCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCeEEEEecCc
Q 001293 1023 VANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1067 (1106)
Q Consensus 1023 ~~~p~illLDEPts-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 1067 (1106)
..++.+||+||+.. .-+..++..+...+....+.|..+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 35799999999866 2344778888888888777777787777754
No 442
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.63 E-value=0.0055 Score=62.43 Aligned_cols=27 Identities=41% Similarity=0.667 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998653
No 443
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.62 E-value=0.0048 Score=66.64 Aligned_cols=45 Identities=38% Similarity=0.643 Sum_probs=30.2
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCcc
Q 001293 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 218 (1106)
.++++++.+++| ++|.||||+|||||+++|++.+... -+.+++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~-----~~~i~~~~ 80 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP-----FFTISGSD 80 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC-----EEEECSCS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC-----EEEEeHHH
Confidence 355555655555 8999999999999999999986532 35566544
No 444
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.62 E-value=0.0022 Score=66.39 Aligned_cols=49 Identities=29% Similarity=0.386 Sum_probs=35.9
Q ss_pred EEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC------CCCeeeeEEEEcC
Q 001293 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK------TGGYITGNITISG 931 (1106)
Q Consensus 882 ~~L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~------~~~~~~G~i~i~g 931 (1106)
.+++++|+..+++ .++|+|++|+|||||++.+.+.. +.+...+.+.++|
T Consensus 14 ~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~ 68 (198)
T 1f6b_A 14 SVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAG 68 (198)
T ss_dssp HHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETT
T ss_pred HHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECC
Confidence 3677888887777 57999999999999999999732 1123345666665
No 445
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.61 E-value=0.029 Score=60.24 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 001293 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1106)
Q Consensus 896 ~~al~G~nGaGKSTLl~~L~g~~ 918 (1106)
.++|+|.+|+|||||++.|.|..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999854
No 446
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.60 E-value=0.006 Score=61.94 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 001293 180 LTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 447
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.59 E-value=0.0054 Score=62.68 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=26.0
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 001293 886 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1106)
Q Consensus 886 ~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~ 917 (1106)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46788888999999999999999999999864
No 448
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.56 E-value=0.011 Score=62.41 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=41.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec---------CccHHHHHhcCeEEEEe
Q 001293 1025 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---------QPSIDIFEAFDELFLMK 1082 (1106)
Q Consensus 1025 ~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H---------~~~~~~~~~~D~v~~l~ 1082 (1106)
++++|++||... |+.. +.+.++.+++.|.+||++-| ..+.++.+.+|.|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 489999999965 6643 44556666667999999999 56668889999998754
No 449
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.54 E-value=0.013 Score=59.50 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 001293 896 LTALMGVSGAGKTTLMDVLAGR 917 (1106)
Q Consensus 896 ~~al~G~nGaGKSTLl~~L~g~ 917 (1106)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 450
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.51 E-value=0.04 Score=61.62 Aligned_cols=132 Identities=17% Similarity=0.155 Sum_probs=0.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCC--------------CCCCee-eeEEEEcCccCCcccccceEEEEccCCCCCCC
Q 001293 891 FRPGVLTALMGVSGAGKTTLMDVLAGR--------------KTGGYI-TGNITISGYPKKQETFARISGYCEQNDIHSPF 955 (1106)
Q Consensus 891 v~~G~~~al~G~nGaGKSTLl~~L~g~--------------~~~~~~-~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~ 955 (1106)
+++|+++.|.|++|+|||||...++.. ..+|.. ..-++++....
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~--------------------- 153 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT--------------------- 153 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC---------------------
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC---------------------
Q ss_pred CCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHh---cCCCeEEEe
Q 001293 956 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV---ANPSIIFMD 1032 (1106)
Q Consensus 956 ~tv~e~l~~~~~~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~---~~p~illLD 1032 (1106)
.....-......+... .+++++.+-+....+ +..+.+.+..+..++ .++++|++|
T Consensus 154 ~~~~~l~~~~~~~g~~-----------~~~~~~~l~~~~~~~-----------~~~~~~~l~~l~~~~~~~~~~~lvVID 211 (322)
T 2i1q_A 154 FRPERIMQMAEHAGID-----------GQTVLDNTFVARAYN-----------SDMQMLFAEKIEDLIQEGNNIKLVVID 211 (322)
T ss_dssp CCHHHHHHHHHHHTCC-----------HHHHHHTEEEEECSS-----------HHHHHHHHHTHHHHHHTTCEEEEEEEE
T ss_pred CCHHHHHHHHHHcCCC-----------HHHHhcCEEEEeCCC-----------HHHHHHHHHHHHHHHhhccCccEEEEE
Q ss_pred CCCCCCCH------------HHHHHHHHHHHHHHhC-CCeEEEEec
Q 001293 1033 EPTSGLDA------------RAAAIVMRTVRNTVDT-GRTVVCTIH 1065 (1106)
Q Consensus 1033 EPtsgLD~------------~~~~~i~~~l~~~~~~-g~tvi~~~H 1065 (1106)
.-++-... ..-..+++.|++++++ |++||++.|
T Consensus 212 sl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq 257 (322)
T 2i1q_A 212 SLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQ 257 (322)
T ss_dssp CSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECc
No 451
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.51 E-value=0.0055 Score=61.95 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC
Q 001293 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
|.++.|.|+|||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998864
No 452
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.51 E-value=0.061 Score=61.06 Aligned_cols=27 Identities=37% Similarity=0.607 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
++..-++|.||+|+|||||+++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456678999999999999999999875
No 453
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.43 E-value=0.0053 Score=63.66 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 178 GRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
..+++|+|+||||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999875
No 454
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.37 E-value=0.0063 Score=63.07 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 001293 896 LTALMGVSGAGKTTLMDVLAG 916 (1106)
Q Consensus 896 ~~al~G~nGaGKSTLl~~L~g 916 (1106)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 455
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.35 E-value=0.0074 Score=60.37 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 001293 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999997753
No 456
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.29 E-value=0.067 Score=60.76 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=22.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCC
Q 001293 892 RPGVLTALMGVSGAGKTTLMDVLAGR 917 (1106)
Q Consensus 892 ~~G~~~al~G~nGaGKSTLl~~L~g~ 917 (1106)
.+..-+.|.||+|+|||||.++|+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34557899999999999999999964
No 457
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.26 E-value=0.0081 Score=61.43 Aligned_cols=27 Identities=44% Similarity=0.587 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998654
No 458
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.20 E-value=0.0022 Score=72.48 Aligned_cols=41 Identities=32% Similarity=0.606 Sum_probs=35.3
Q ss_pred ceeeeceeEEEeCCeE--EEEEcCCCCcHHHHHHHHhCCCCCC
Q 001293 165 LTILKDVSGVIKPGRL--TLLLGPPSSGKTTLLLALAGKLDPT 205 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1106)
..+++.++..++.|++ +++.||||+||||+++++++.+.+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~ 73 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3477778888888988 9999999999999999999987553
No 459
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.13 E-value=0.01 Score=60.53 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 001293 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
+|.+++|.|++||||||+.+.|+-.+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999987653
No 460
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.11 E-value=0.026 Score=64.23 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=22.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCC
Q 001293 892 RPGVLTALMGVSGAGKTTLMDVLAGR 917 (1106)
Q Consensus 892 ~~G~~~al~G~nGaGKSTLl~~L~g~ 917 (1106)
..+..+.|.||+|+|||||++.++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 34567899999999999999999863
No 461
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.09 E-value=0.0084 Score=68.77 Aligned_cols=43 Identities=19% Similarity=0.410 Sum_probs=31.7
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC---------CCeeeeEEEEcC
Q 001293 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---------GGYITGNITISG 931 (1106)
Q Consensus 889 ~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~---------~~~~~G~i~i~g 931 (1106)
..+..|..++|+|++|+|||||++.|+|... ..+..|.+.+.+
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 3567888999999999999999999998521 123456666654
No 462
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.09 E-value=0.0098 Score=60.40 Aligned_cols=38 Identities=34% Similarity=0.323 Sum_probs=28.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC-CCeeeeEEEEcCc
Q 001293 895 VLTALMGVSGAGKTTLMDVLAGRKT-GGYITGNITISGY 932 (1106)
Q Consensus 895 ~~~al~G~nGaGKSTLl~~L~g~~~-~~~~~G~i~i~g~ 932 (1106)
.+++|+|++|||||||++.|.+... .+...|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 4789999999999999999997421 1233566766553
No 463
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.08 E-value=0.0093 Score=65.73 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=28.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcC
Q 001293 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG 216 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G 216 (1106)
..|.++.|.|||||||||+.+.|+..++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEec
Confidence 3577999999999999999999987653 24455654
No 464
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.03 E-value=0.0097 Score=66.01 Aligned_cols=38 Identities=32% Similarity=0.569 Sum_probs=30.4
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcC
Q 001293 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG 216 (1106)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G 216 (1106)
.++++.-++|.||||+|||||+++|++.+. .+-+.+++
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~-----~~~i~v~~ 82 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISIKG 82 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT-----CEEEEECH
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC-----CCEEEEEh
Confidence 356888999999999999999999999864 34455543
No 465
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.00 E-value=0.0082 Score=64.86 Aligned_cols=25 Identities=36% Similarity=0.608 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC
Q 001293 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
.+++|+||||||||||.+.|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3789999999999999999998753
No 466
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.98 E-value=0.011 Score=62.82 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 179 RLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
-+++|.||+||||||+.+.|+..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999765
No 467
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.94 E-value=0.011 Score=60.94 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=24.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
++|.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 367899999999999999999999876
No 468
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.94 E-value=0.05 Score=63.72 Aligned_cols=38 Identities=29% Similarity=0.343 Sum_probs=32.1
Q ss_pred ceeeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
..-|+.+.+=+++|+++.|.|+||+|||||+.-++...
T Consensus 184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 44677777779999999999999999999988887543
No 469
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.91 E-value=0.012 Score=59.86 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 001293 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999964
No 470
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.91 E-value=0.011 Score=60.36 Aligned_cols=29 Identities=34% Similarity=0.543 Sum_probs=25.3
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 001293 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1106)
Q Consensus 889 ~~v~~G~~~al~G~nGaGKSTLl~~L~g~ 917 (1106)
....+|.++.|+|++||||||+.+.|++.
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 33457899999999999999999999974
No 471
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.89 E-value=0.013 Score=59.62 Aligned_cols=26 Identities=27% Similarity=0.155 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
++..+.|+||+||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999999998765
No 472
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.87 E-value=0.013 Score=58.57 Aligned_cols=19 Identities=37% Similarity=0.593 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 001293 180 LTLLLGPPSSGKTTLLLAL 198 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L 198 (1106)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 473
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.86 E-value=0.012 Score=62.80 Aligned_cols=28 Identities=29% Similarity=0.297 Sum_probs=24.7
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 175 IKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
-++|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578899999999999999999999864
No 474
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.80 E-value=0.015 Score=60.23 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 001293 177 PGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5778999999999999999999987754
No 475
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.75 E-value=0.015 Score=59.12 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 001293 896 LTALMGVSGAGKTTLMDVLAGR 917 (1106)
Q Consensus 896 ~~al~G~nGaGKSTLl~~L~g~ 917 (1106)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999984
No 476
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.75 E-value=0.015 Score=58.50 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 001293 179 RLTLLLGPPSSGKTTLLLALAG 200 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G 200 (1106)
.++.|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 477
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.72 E-value=0.013 Score=59.39 Aligned_cols=26 Identities=46% Similarity=0.378 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
.+..+.|.|++||||||+.+.|+-.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998554
No 478
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.72 E-value=0.012 Score=60.28 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 001293 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
.+.|+||||||||||++.|....+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 478999999999999999987654
No 479
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.72 E-value=0.012 Score=61.52 Aligned_cols=39 Identities=26% Similarity=0.277 Sum_probs=29.8
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeee--EEEEcC
Q 001293 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG--NITISG 931 (1106)
Q Consensus 891 v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G--~i~i~g 931 (1106)
+++|.+++|+|++||||||+.+.|++... +..| .+.+++
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~--~~~g~~~~~~~~ 62 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLV--RDRRVHAYRLDG 62 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH--HHHCCCEEEECH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhc--cccCCcEEEECC
Confidence 56789999999999999999999997432 1234 556654
No 480
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.69 E-value=0.0031 Score=70.94 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=31.2
Q ss_pred EeeeeEEEEeCCeE--EEEEcCCCCcHHHHHHHHhCC
Q 001293 883 LLNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGR 917 (1106)
Q Consensus 883 ~L~~is~~v~~G~~--~al~G~nGaGKSTLl~~L~g~ 917 (1106)
+++.+++.+++|+. ++|+|++||||||+.++|++.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 67778888889988 999999999999999999973
No 481
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.66 E-value=0.011 Score=59.52 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCC
Q 001293 179 RLTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
.+++|+|++|||||||+..|++.+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47899999999999999999988654
No 482
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.64 E-value=0.012 Score=60.89 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 001293 894 GVLTALMGVSGAGKTTLMDVLAGR 917 (1106)
Q Consensus 894 G~~~al~G~nGaGKSTLl~~L~g~ 917 (1106)
..+++|+|++||||||+.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 483
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.61 E-value=0.0072 Score=70.14 Aligned_cols=46 Identities=24% Similarity=0.088 Sum_probs=35.8
Q ss_pred eeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccC
Q 001293 885 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1106)
Q Consensus 885 ~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1106)
+++++. +|++++++|+||+||||++..|++.... ..+.|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~--~g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEeeccc
Confidence 567777 8999999999999999999999985331 235677666554
No 484
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.61 E-value=0.017 Score=58.78 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhC
Q 001293 892 RPGVLTALMGVSGAGKTTLMDVLAG 916 (1106)
Q Consensus 892 ~~G~~~al~G~nGaGKSTLl~~L~g 916 (1106)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999984
No 485
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.60 E-value=0.035 Score=74.27 Aligned_cols=30 Identities=40% Similarity=0.565 Sum_probs=27.5
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 001293 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
=+++|+++.|.||||+|||||+..++....
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 599999999999999999999999987654
No 486
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.57 E-value=0.016 Score=59.39 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998664
No 487
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.55 E-value=0.017 Score=60.00 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=24.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
++|.+++|.|++||||||+.+.|+-.+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998764
No 488
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.47 E-value=0.018 Score=59.27 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 001293 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998764
No 489
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.46 E-value=0.02 Score=59.95 Aligned_cols=24 Identities=33% Similarity=0.314 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 001293 177 PGRLTLLLGPPSSGKTTLLLALAG 200 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G 200 (1106)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 490
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.42 E-value=0.28 Score=54.67 Aligned_cols=119 Identities=23% Similarity=0.291 Sum_probs=0.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhcCC
Q 001293 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS 971 (1106)
Q Consensus 892 ~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~~r~~ 971 (1106)
.|..-+.|.||.|+|||||.++++....+... +.+++-
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~---~~i~~~--------------------------------------- 80 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEANNSTF---FSISSS--------------------------------------- 80 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTSCEE---EEEECC---------------------------------------
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcCCCcE---EEEEhH---------------------------------------
Q ss_pred CCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC-------CCCCCHHHHH
Q 001293 972 PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP-------TSGLDARAAA 1044 (1106)
Q Consensus 972 ~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEP-------tsgLD~~~~~ 1044 (1106)
.+.....| ...+.-+-.+..+-..+|.|||+||. ..+......+
T Consensus 81 ----------------------~l~~~~~g-------~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~ 131 (322)
T 1xwi_A 81 ----------------------DLVSKWLG-------ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARR 131 (322)
T ss_dssp ----------------------SSCCSSCC-------SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHH
T ss_pred ----------------------HHHhhhhh-------HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHH
Q ss_pred HHHHHHHHH-----HhCCCeEEEEecCc---cHHHHHhcCeEEEE
Q 001293 1045 IVMRTVRNT-----VDTGRTVVCTIHQP---SIDIFEAFDELFLM 1081 (1106)
Q Consensus 1045 ~i~~~l~~~-----~~~g~tvi~~~H~~---~~~~~~~~D~v~~l 1081 (1106)
.+.+.+..+ ...+..||.+|+.| +..+...||+.+.+
T Consensus 132 ~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i 176 (322)
T 1xwi_A 132 IKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYI 176 (322)
T ss_dssp HHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEEC
T ss_pred HHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEe
No 491
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.39 E-value=0.021 Score=58.17 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
++.+++|.|++||||||+.+.|+-.+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998654
No 492
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.37 E-value=0.019 Score=57.96 Aligned_cols=23 Identities=43% Similarity=0.473 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 001293 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
.++|+|+|||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999765
No 493
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.34 E-value=0.019 Score=59.65 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=24.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
++|.+++|.|++||||||+.+.|+-.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999999765
No 494
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.32 E-value=0.0068 Score=63.16 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCC
Q 001293 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
+++|.|++||||||+++.|+..+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999988754
No 495
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.31 E-value=0.022 Score=59.85 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
++|..++|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998765
No 496
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.27 E-value=0.26 Score=58.62 Aligned_cols=33 Identities=21% Similarity=0.128 Sum_probs=27.5
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhC
Q 001293 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1106)
Q Consensus 884 L~~is~~v~~G~~~al~G~nGaGKSTLl~~L~g 916 (1106)
|+.+.+-+.+|+++.|.|++|+|||||..-++-
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 444444589999999999999999999887763
No 497
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.26 E-value=0.0083 Score=61.68 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 001293 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998764
No 498
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.25 E-value=0.019 Score=61.03 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=23.3
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhC
Q 001293 891 FRPGVLTALMGVSGAGKTTLMDVLAG 916 (1106)
Q Consensus 891 v~~G~~~al~G~nGaGKSTLl~~L~g 916 (1106)
-.+|.+++|+|++||||||+.+.|++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999999996
No 499
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.24 E-value=0.11 Score=55.80 Aligned_cols=123 Identities=15% Similarity=0.164 Sum_probs=0.0
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeeeEEEEcCccCCcccccceEEEEccCCCCCCCCCHHHHHHHHHh
Q 001293 888 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAW 967 (1106)
Q Consensus 888 s~~v~~G~~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~tv~e~l~~~~~ 967 (1106)
...+++..-+.|.||+|+|||||.+.|+.... .--+.+++.+.....
T Consensus 33 ~~g~~~~~~vll~G~~GtGKT~la~~la~~~~----~~~~~~~~~~~~~~~----------------------------- 79 (262)
T 2qz4_A 33 QLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ----VPFLAMAGAEFVEVI----------------------------- 79 (262)
T ss_dssp ---CCCCCEEEEESCTTSSHHHHHHHHHHHHT----CCEEEEETTTTSSSS-----------------------------
T ss_pred HcCCCCCceEEEECCCCCCHHHHHHHHHHHhC----CCEEEechHHHHhhc-----------------------------
Q ss_pred hcCCCCCChHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC---------
Q 001293 968 LRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL--------- 1038 (1106)
Q Consensus 968 ~r~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~g~~g~~~LSgGqrqrl~iA~aL~~~p~illLDEPtsgL--------- 1038 (1106)
.-.+..+.+-.+..+.-..|.+||+||.-.-.
T Consensus 80 ---------------------------------------~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~ 120 (262)
T 2qz4_A 80 ---------------------------------------GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSG 120 (262)
T ss_dssp ---------------------------------------TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------
T ss_pred ---------------------------------------cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccC
Q ss_pred --CHHHHHHHHHHHHHHHh----CCCeEEEEecCcc---HHHHH--hcCeEEEEe
Q 001293 1039 --DARAAAIVMRTVRNTVD----TGRTVVCTIHQPS---IDIFE--AFDELFLMK 1082 (1106)
Q Consensus 1039 --D~~~~~~i~~~l~~~~~----~g~tvi~~~H~~~---~~~~~--~~D~v~~l~ 1082 (1106)
+......+.+++..+.. .+..||++++.+. ..+.. .||+.+.+.
T Consensus 121 ~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~ 175 (262)
T 2qz4_A 121 FSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFID 175 (262)
T ss_dssp ------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECC
T ss_pred ccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeC
No 500
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.21 E-value=0.022 Score=57.95 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 001293 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
+++|.|++||||||+.+.|+-.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
Done!