BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001295
(1106 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 49 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 104
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 105 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 158
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 159 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 200
Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 201 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 254
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 100 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 158
Query: 923 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 976
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 159 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 206
Query: 977 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1011
C+K + + + P++ FS + + + A LD T+
Sbjct: 207 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 240
Score = 33.5 bits (75), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 867 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 924
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 276 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 335
Score = 33.5 bits (75), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 392 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 451
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 198 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 255
Query: 452 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 499
H N++ C+ ++ +D + +W+ +G
Sbjct: 256 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 301
Query: 500 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 533
H V S H ENI I S AL D IK W D
Sbjct: 302 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 335
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 47 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 102
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 103 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 156
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 157 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 198
Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 199 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 252
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 98 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 156
Query: 923 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 976
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 157 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 204
Query: 977 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1011
C+K + + + P++ FS + + + A LD T+
Sbjct: 205 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 238
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 867 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 924
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 274 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 333
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 392 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 451
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 196 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 253
Query: 452 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 499
H N++ C+ ++ +D + +W+ +G
Sbjct: 254 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 299
Query: 500 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 533
H V S H ENI I S AL D IK W D
Sbjct: 300 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 333
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 87 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 140
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 141 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 183 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 236
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 140
Query: 923 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 976
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 141 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 977 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1011
C+K + + + P++ FS + + + A LD T+
Sbjct: 189 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 222
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 867 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 924
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 392 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 451
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 180 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Query: 452 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 499
H N++ C+ ++ +D + +W+ +G
Sbjct: 238 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Query: 500 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 533
H V S H ENI I S AL D IK W D
Sbjct: 284 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 317
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 87 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 140
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 141 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 183 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 236
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 140
Query: 923 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 976
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 141 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 977 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1011
C+K + + + P++ FS + + + A LD T+
Sbjct: 189 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 222
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 867 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 924
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 392 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 451
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 180 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Query: 452 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 499
H N++ C+ ++ +D + +W+ +G
Sbjct: 238 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Query: 500 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 533
H V S H ENI I S AL D IK W D
Sbjct: 284 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 317
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 21 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 76
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 77 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 130
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 131 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 172
Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 173 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 226
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 72 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 130
Query: 923 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 976
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 131 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 178
Query: 977 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1011
C+K + + + P++ FS + + + A LD T+
Sbjct: 179 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 212
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 867 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 924
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 248 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 307
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 392 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 451
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 170 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 227
Query: 452 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 499
H N++ C+ ++ +D + +W+ +G
Sbjct: 228 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 273
Query: 500 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 533
H V S H ENI I S AL D IK W D
Sbjct: 274 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 307
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 87 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 140
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 141 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 183 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 236
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 140
Query: 923 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 976
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 141 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 977 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1011
C+K + + + P++ FS + + + A LD T+
Sbjct: 189 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 222
Score = 33.1 bits (74), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 867 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 924
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 392 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 451
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 180 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Query: 452 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 499
H N++ C+ ++ +D + +W+ +G
Sbjct: 238 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Query: 500 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 533
H V S H ENI I S AL D IK W D
Sbjct: 284 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 317
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 81 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 134
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 135 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 177 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 230
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 134
Query: 923 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 976
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 135 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 977 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1011
C+K + + + P++ FS + + + A LD T+
Sbjct: 183 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 216
Score = 33.1 bits (74), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 867 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 924
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 392 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 451
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 174 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 231
Query: 452 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 499
H N++ C+ ++ +D + +W+ +G
Sbjct: 232 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 277
Query: 500 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 533
H V S H ENI I S AL D IK W D
Sbjct: 278 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 311
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 42 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 97
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 98 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 151
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 152 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 193
Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 194 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 247
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 93 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 151
Query: 923 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 976
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 152 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 199
Query: 977 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1011
C+K + + + P++ FS + + + A LD T+
Sbjct: 200 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 233
Score = 33.1 bits (74), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 867 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 924
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 269 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 328
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 392 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 451
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 191 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 248
Query: 452 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 499
H N++ C+ ++ +D + +W+ +G
Sbjct: 249 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 294
Query: 500 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 533
H V S H ENI I S AL D IK W D
Sbjct: 295 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 328
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 26 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 81
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 82 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 135
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 136 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 177
Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 178 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 231
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 77 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 135
Query: 923 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 976
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 136 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 183
Query: 977 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1011
C+K + + + P++ FS + + + A LD T+
Sbjct: 184 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 217
Score = 33.1 bits (74), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 867 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 924
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 253 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 312
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 392 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 451
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 175 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 232
Query: 452 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 499
H N++ C+ ++ +D + +W+ +G
Sbjct: 233 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 278
Query: 500 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 533
H V S H ENI I S AL D IK W D
Sbjct: 279 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 312
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 30 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 85
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 86 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 139
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 140 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 181
Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 182 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 235
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 81 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 139
Query: 923 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 976
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 140 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 187
Query: 977 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1011
C+K + + + P++ FS + + + A LD T+
Sbjct: 188 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 221
Score = 33.1 bits (74), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 867 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 924
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 257 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 316
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 392 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 451
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 179 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 236
Query: 452 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 499
H N++ C+ ++ +D + +W+ +G
Sbjct: 237 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 282
Query: 500 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 533
H V S H ENI I S AL D IK W D
Sbjct: 283 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 316
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 81 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 134
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 135 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 177 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 230
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 134
Query: 923 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 976
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 135 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 977 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1011
C+K + + + P++ FS + + + A LD T+
Sbjct: 183 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 216
Score = 33.1 bits (74), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 867 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 924
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 392 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 451
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 174 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 231
Query: 452 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 499
H N++ C+ ++ +D + +W+ +G
Sbjct: 232 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 277
Query: 500 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 533
H V S H ENI I S AL D IK W D
Sbjct: 278 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 311
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 24 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 79
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 80 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 133
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 134 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 175
Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 176 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 229
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 20/156 (12%)
Query: 862 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 921
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 74 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 133
Query: 922 SSDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKL 975
+ TG +T A SD H ++ L+V ++ I++T
Sbjct: 134 -------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 180
Query: 976 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1011
+C+K + + + P++ FS + + + A LD T+
Sbjct: 181 QCLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 215
Score = 33.1 bits (74), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 867 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 924
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 251 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 310
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 392 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 451
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 173 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 230
Query: 452 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 499
H N++ C+ ++ +D + +W+ +G
Sbjct: 231 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 276
Query: 500 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 533
H V S H ENI I S AL D IK W D
Sbjct: 277 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 310
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 28 AVSSVKFSPNGEWLAASSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 138 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 923 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 976
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 138 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 977 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1011
C+K + + + P++ FS + + + A LD T+
Sbjct: 186 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 219
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 867 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 924
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 392 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 451
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 177 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 234
Query: 452 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 499
H N++ C+ ++ +D + +W+ +G
Sbjct: 235 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 280
Query: 500 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 533
H V S H ENI I S AL D IK W D
Sbjct: 281 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 314
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 138 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 923 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 976
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 138 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 977 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1011
C+K + + + P++ FS + + + A LD T+
Sbjct: 186 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 219
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 392 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 449
++WD+ G C L A DP V+ V ++ DGSL + + +I+ G ++
Sbjct: 135 RIWDVKTGKCLKTLPAH--SDP---VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 450 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 507
++ D V+ + FS K + T D T+K+WD + G + GH+ Y +
Sbjct: 190 LIDDDNPP--VSFVKFSPNGKYILAATL--DNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 138 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 923 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 976
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 138 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 977 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1011
C+K + + + P++ FS + + + A LD T+
Sbjct: 186 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 219
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 392 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 449
++WD+ G C L A DP V+ V ++ DGSL + + +I+ G ++
Sbjct: 135 RIWDVKTGKCLKTLPAH--SDP---VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 450 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 507
++ D V+ + FS K + T D T+K+WD + G + GH+ Y +
Sbjct: 190 LIDDDNPP--VSFVKFSPNGKYILAATL--DNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 107/236 (45%), Gaps = 30/236 (12%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
D + G T+ +D + V F+ + +++ D + W
Sbjct: 138 ------DVKT-GMCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 923 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 976
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 138 ------------DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 977 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1011
C+K + + + P++ FS + + + A LD T+
Sbjct: 186 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 219
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 867 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 924
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 255 IVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 392 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 451
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 177 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 234
Query: 452 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 499
H N++ C+ ++ +D + +W+ +G
Sbjct: 235 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQG 280
Query: 500 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 533
H V S H ENI I S AL D IK W D
Sbjct: 281 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 314
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 107/236 (45%), Gaps = 30/236 (12%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
D + G T+ +D + V F+ + +++ D + W
Sbjct: 138 ------DVKT-GMCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNDLKLWDYSKG-KCLKTY 233
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 70/152 (46%), Gaps = 20/152 (13%)
Query: 863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 923 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 976
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 138 ------------DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 977 CVKQWVPRESSAPITHATFSCDSQLVYACFLD 1008
C+K + + + P++ FS + + + A LD
Sbjct: 186 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLD 216
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 867 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 924
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 255 IVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 392 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 451
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 177 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYT 234
Query: 452 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 499
H N++ C+ ++ +D + +W+ +G
Sbjct: 235 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQG 280
Query: 500 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 533
H V S H ENI I S AL D IK W D
Sbjct: 281 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 314
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 100/224 (44%), Gaps = 36/224 (16%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
SV V +SPDG A V++++ +G ++ Q L H VN +AF P+ Q
Sbjct: 223 SVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLT--GHSSSVNGVAF-RPDGQ-T 276
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
+ + DDKT+K+W+ NG GH + V+ V + Q I S + D +K L++
Sbjct: 277 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA--FSPDGQTIASASDDKTVK--LWN 331
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
G + +T G GV F +A DD ++K W
Sbjct: 332 RNGQHL-------------------QTLTGHSSSVWGVA-FSPDGQTIASASDDKTVKLW 371
Query: 594 DMDSVQLLTSIDADGGLPASPR-IRFNKDGCLLAVSTNDNGIKI 636
+ + QLL ++ G +S R + F+ DG +A +++D +K+
Sbjct: 372 NRNG-QLLQTLT---GHSSSVRGVAFSPDGQTIASASDDKTVKL 411
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 98/224 (43%), Gaps = 36/224 (16%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
SV V +SPDG A V++++ +G ++ Q L H V +AFS P+ Q
Sbjct: 346 SVWGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLT--GHSSSVRGVAFS-PDGQ-T 399
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
+ + DDKT+K+W+ NG GH + V+ V + Q I S + D +K W
Sbjct: 400 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA--FSPDDQTIASASDDKTVKLW--- 453
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
G+ T+ + R V F +A DD ++K W
Sbjct: 454 --------NRNGQLLQTLTGHSSSVRG-----------VAFSPDGQTIASASDDKTVKLW 494
Query: 594 DMDSVQLLTSIDADGGLPASPR-IRFNKDGCLLAVSTNDNGIKI 636
+ + QLL ++ G +S R + F+ DG +A +++D +K+
Sbjct: 495 NRNG-QLLQTLT---GHSSSVRGVAFSPDGQTIASASDDKTVKL 534
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 106/246 (43%), Gaps = 39/246 (15%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
SV V +SPDG A V++++ +G ++ Q L H V +AFS P+ Q
Sbjct: 18 SVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLT--GHSSSVWGVAFS-PDGQ-T 71
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
+ + DDKT+K+W+ NG GH + V V + Q I S + D +K W +
Sbjct: 72 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA--FSPDGQTIASASDDKTVKLWNRN 128
Query: 534 N-LGSRVDYEAPGRWCTTMAYSADGT---------------------RTYQGFRKRSLGV 571
L + + W +A+S DG +T G GV
Sbjct: 129 GQLLQTLTGHSSSVWG--VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGV 186
Query: 572 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPR-IRFNKDGCLLAVSTN 630
F +A DD ++K W+ + QLL ++ G +S R + F+ DG +A +++
Sbjct: 187 A-FSPDGQTIASASDDKTVKLWNRNG-QLLQTLT---GHSSSVRGVAFSPDGQTIASASD 241
Query: 631 DNGIKI 636
D +K+
Sbjct: 242 DKTVKL 247
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 95/223 (42%), Gaps = 34/223 (15%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
SV V +SPDG A V++++ +G ++ Q L H V +AFS P+ Q
Sbjct: 100 SVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLT--GHSSSVWGVAFS-PDGQ-T 153
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
+ + DDKT+K+W+ NG GH + V+ V + Q I S + D +K W
Sbjct: 154 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA--FSPDGQTIASASDDKTVKLW--- 207
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
G+ T+ + R V F +A DD ++K W
Sbjct: 208 --------NRNGQLLQTLTGHSSSVRG-----------VAFSPDGQTIASASDDKTVKLW 248
Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 636
+ + QLL ++ G + + F DG +A +++D +K+
Sbjct: 249 NRNG-QLLQTL--TGHSSSVNGVAFRPDGQTIASASDDKTVKL 288
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
SV V +SPDG A V++++ +G ++ Q L H V +AFS P+ Q
Sbjct: 469 SVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLT--GHSSSVRGVAFS-PDGQ-T 522
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 530
+ + DDKT+K+W+ NG GH + V+ V + Q I S + D +K W
Sbjct: 523 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA--FSPDGQTIASASSDKTVKLW 576
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 92/213 (43%), Gaps = 35/213 (16%)
Query: 447 VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 506
V++ ++AH V +AFS P+ Q + + DDKT+K+W+ NG GH + V+
Sbjct: 6 VKERNRLEAHSSSVRGVAFS-PDGQ-TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWG 62
Query: 507 VCPHHKENIQFIFSTALDGKIKAWLYDN--LGSRVDYEAPGRWCTTMAYSADGT------ 558
V + Q I S + D +K W + L + + + R +A+S DG
Sbjct: 63 VA--FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR---GVAFSPDGQTIASAS 117
Query: 559 ---------------RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTS 603
+T G GV F +A DD ++K W+ + QLL +
Sbjct: 118 DDKTVKLWNRNGQLLQTLTGHSSSVWGVA-FSPDGQTIASASDDKTVKLWNRNG-QLLQT 175
Query: 604 IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 636
+ G + + F+ DG +A +++D +K+
Sbjct: 176 L--TGHSSSVWGVAFSPDGQTIASASDDKTVKL 206
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 12/152 (7%)
Query: 863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
D+ IA DD +++++N R ++ L GHS + G+AFS + S+ D + +W+
Sbjct: 437 DDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 495
Query: 923 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 982
+G + LQ TG + + + V F D + + + ++
Sbjct: 496 RNG------QLLQTLTGHSSSVRG---VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 546
Query: 983 PRESSAPITHATFSCDSQLVYACFLDATVCVF 1014
SS + FS D Q + + D TV ++
Sbjct: 547 GHSSS--VWGVAFSPDGQTIASASSDKTVKLW 576
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 63/160 (39%), Gaps = 28/160 (17%)
Query: 863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
D IA DD +++++N R ++ L GHS + G+AFS + S+ D + +W+
Sbjct: 191 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 249
Query: 923 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQW- 981
+G + LQ TG H ++ + I + + VK W
Sbjct: 250 RNG------QLLQTLTG-------------HSSSVNGVAFRPDGQTIASASDDKTVKLWN 290
Query: 982 -------VPRESSAPITHATFSCDSQLVYACFLDATVCVF 1014
S+ + FS D Q + + D TV ++
Sbjct: 291 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 12/152 (7%)
Query: 863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
D IA DD +++++N R ++ L GHS + G+AFS + S+ D + +W+
Sbjct: 396 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN 454
Query: 923 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 982
+G + LQ TG + + + V F D + + + ++
Sbjct: 455 RNG------QLLQTLTGHSSSVRG---VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 505
Query: 983 PRESSAPITHATFSCDSQLVYACFLDATVCVF 1014
SS + FS D Q + + D TV ++
Sbjct: 506 GHSSS--VRGVAFSPDGQTIASASDDKTVKLW 535
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 72/178 (40%), Gaps = 18/178 (10%)
Query: 863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
D IA DD +++++N R ++ L GHS + G+AFS + S+ D + +W+
Sbjct: 109 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
Query: 923 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 982
+G + LQ TG + + V F D + + + ++
Sbjct: 168 RNG------QLLQTLTGHSSSVWG---VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 218
Query: 983 PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC------RINPSAYLPAG 1034
SS + FS D Q + + D TV +++ L+ +N A+ P G
Sbjct: 219 GHSSS--VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDG 274
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 12/152 (7%)
Query: 863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
D IA DD +++++N R ++ L GHS + G+AFS + S+ D + +W+
Sbjct: 355 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 413
Query: 923 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 982
+G + LQ TG + + V F D + + + ++
Sbjct: 414 RNG------QLLQTLTGHSSSVWG---VAFSPDDQTIASASDDKTVKLWNRNGQLLQTLT 464
Query: 983 PRESSAPITHATFSCDSQLVYACFLDATVCVF 1014
SS + FS D Q + + D TV ++
Sbjct: 465 GHSSS--VRGVAFSPDGQTIASASDDKTVKLW 494
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 12/152 (7%)
Query: 863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
D IA DD +++++N R ++ L GHS + G+AFS + S+ D + +W+
Sbjct: 27 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 85
Query: 923 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 982
+G + LQ TG + + + V F D + + + ++
Sbjct: 86 RNG------QLLQTLTGHSSSVRG---VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 136
Query: 983 PRESSAPITHATFSCDSQLVYACFLDATVCVF 1014
SS + FS D Q + + D TV ++
Sbjct: 137 GHSSS--VWGVAFSPDGQTIASASDDKTVKLW 166
Score = 37.0 bits (84), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
D IA DD +++++N R ++ L GHS + G+AFS + S+ D + +W+
Sbjct: 273 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 331
Query: 923 SDGWEKQKNRFLQIPTGRTPT 943
+G + LQ TG + +
Sbjct: 332 RNG------QHLQTLTGHSSS 346
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 12/152 (7%)
Query: 863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
D IA DD +++++N +++ L GHS + G+AFS + S+ D + +W+
Sbjct: 314 DGQTIASASDDKTVKLWNRNGQHLQT-LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 372
Query: 923 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 982
+G + LQ TG + + + V F D + + + ++
Sbjct: 373 RNG------QLLQTLTGHSSSVRG---VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 423
Query: 983 PRESSAPITHATFSCDSQLVYACFLDATVCVF 1014
SS + FS D Q + + D TV ++
Sbjct: 424 GHSSS--VWGVAFSPDDQTIASASDDKTVKLW 453
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 52/272 (19%)
Query: 338 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 397
D+ KT + N+ +DFHP + +L G + LW ++ + +R+ +V
Sbjct: 4 DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQ--VEVRSIQV---- 53
Query: 398 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 457
P++A G + R W GS +++++Y+ G++V ++ +AH
Sbjct: 54 -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 458 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 516
+ IA HP K V++ DD T+K+W+ N A + FEGHE V V + K+
Sbjct: 98 DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 517 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 576
F S LD +K W +LG P TT ++R + V +
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 577 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 606
++ + A DD +IK WD + + +++
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 34/68 (50%)
Query: 863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
D + DD +I+I++ + + L+GH ++ F L +++S D L +W+
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 923 SDGWEKQK 930
S ++ +K
Sbjct: 257 SSTYKVEK 264
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 459 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 518
GVN + + + +IT DD TIK+WD + EGH + V H + I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243
Query: 519 FSTALDGKIKAW 530
S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 52/272 (19%)
Query: 338 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 397
D+ KT + N+ +DFHP + +L G + LW ++ + +R+ +V
Sbjct: 4 DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQ--VEVRSIQV---- 53
Query: 398 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 457
P++A G + R W GS +++++Y+ G++V ++ +AH
Sbjct: 54 -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 458 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 516
+ IA HP K V++ DD T+K+W+ N A + FEGHE V V + K+
Sbjct: 98 DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 517 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 576
F S LD +K W +LG P TT ++R + V +
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 577 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 606
++ + A DD +IK WD + + +++
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 34/68 (50%)
Query: 863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
D + DD +I+I++ + + L+GH ++ F L +++S D L +W+
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 923 SDGWEKQK 930
S ++ +K
Sbjct: 257 SSTYKVEK 264
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 459 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 518
GVN + + + +IT DD TIK+WD + EGH + V H + I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243
Query: 519 FSTALDGKIKAW 530
S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 81/208 (38%), Gaps = 45/208 (21%)
Query: 451 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 510
L++ H GGV + ++H +++ D+T++VWD G ++FEGH + V +
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 511 HKENIQFIFSTALDGKIKAWLY------DNLGSRVDY--------EAP-------GRWCT 549
+NI++I + + D + W + G DY E P G +
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272
Query: 550 TMAYSADGTRTYQGFRKRSLGV---------------------VQFDTTKNRFLAAGDDF 588
S G G +L V +D + R ++A D
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT 332
Query: 589 SIKFWDMDSVQLLTSIDADGGLPASPRI 616
+I+ WD+++ +L+ ++ L R+
Sbjct: 333 TIRIWDLENGELMYTLQGHTALVGLLRL 360
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 453 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK 512
+ H + + H K+ I+ D TI++WD NG Y +GH A V + +
Sbjct: 306 LSGHTDRIYSTIYDHERKR--CISASMDTTIRIWDLENGELMYTLQGHTALVGLL----R 359
Query: 513 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 556
+ +F+ S A DG I+ W ++ + Y T Y +D
Sbjct: 360 LSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSD 403
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 921
++N + G DD I++Y+ + +L GH + L ++H +LVS D + VW
Sbjct: 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVW 188
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 29/57 (50%)
Query: 865 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 921
NI+ G D+++ +++V + L GH+ RI + H +S+ D+ + +W
Sbjct: 281 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW 337
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 117/272 (43%), Gaps = 52/272 (19%)
Query: 338 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 397
D+ KT + N+ +DFHP + +L G + LW ++ +R+ +V
Sbjct: 4 DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNY--ETQVEVRSIQV---- 53
Query: 398 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 457
P++A G + R W GS +++++Y+ G++V ++ +AH
Sbjct: 54 -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 458 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 516
+ IA HP K V++ DD T+K+W+ N A + FEGHE V V + K+
Sbjct: 98 DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 517 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 576
F S LD +K W +LG P TT ++R + V +
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 577 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 606
++ + A DD +IK WD + + +++
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 459 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 518
GVN + + + +IT DD TIK+WD + EGH + V H + I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243
Query: 519 FSTALDGKIKAW 530
S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 872 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 930
DD +I+I++ + + L+GH ++ F L +++S D L +W+S ++ +K
Sbjct: 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 451 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 510
L++ H GGV + ++H +++ D+T++VWD G ++FEGH + V +
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 511 HKENIQFIFSTALDGKIKAW 530
+NI++I + + D + W
Sbjct: 213 EYKNIKYIVTGSRDNTLHVW 232
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 453 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK 512
+ H + + H K+ I+ D TI++WD NG Y +GH A V + +
Sbjct: 306 LSGHTDRIYSTIYDHERKR--CISASXDTTIRIWDLENGELXYTLQGHTALVGLL----R 359
Query: 513 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 556
+ +F+ S A DG I+ W ++ + Y T Y +D
Sbjct: 360 LSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSD 403
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 921
++N + G DD I++Y+ + +L GH + L ++H +LVS D + VW
Sbjct: 131 EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVW 188
Score = 33.5 bits (75), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
V++ D T+ VWD YI GH +YS H+ + S + D I+ W +
Sbjct: 283 VVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHER--KRCISASXDTTIRIWDLE 340
Query: 534 N 534
N
Sbjct: 341 N 341
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 29/57 (50%)
Query: 865 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 921
NI+ G D+++ +++V + L GH+ RI + H +S+ D+ + +W
Sbjct: 281 NIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIW 337
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 118/272 (43%), Gaps = 52/272 (19%)
Query: 338 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 397
D+ KT + N+ +DFHP + +L G + +W ++ + +R+ +V
Sbjct: 4 DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQ--VEVRSIQV---- 53
Query: 398 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 457
P++A G + R W GS +++++Y+ G++V ++ +AH
Sbjct: 54 -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 458 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 516
+ IA HP K V++ DD T+K+W+ N A + FEGHE V V + K+
Sbjct: 98 DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 517 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 576
F S LD +K W +LG P TT ++R + V +
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 577 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 606
++ + A DD +IK WD + + +++
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 459 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 518
GVN + + + +IT DD TIK+WD + EGH + V H + I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243
Query: 519 FSTALDGKIKAW 530
S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 872 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 930
DD +I+I++ + + L+GH ++ F L +++S D L +W+S ++ +K
Sbjct: 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 29/208 (13%)
Query: 389 RNFKVWDLGA-CSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV 447
R+ VWD+ + + L+ LV +VN V D A +++++ + V
Sbjct: 233 RSIAVWDMASPTDITLRRVLVGHRA-AVNVV--DFDDKYIVSASGDRTIKVWNTSTCEFV 289
Query: 448 RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 507
R ++ H G+ + + + V++ D TI++WD GA + EGHE V +
Sbjct: 290 RT---LNGHKRGIACLQY----RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 342
Query: 508 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 567
+K I S A DGKIK W +L + +D AP GT + +
Sbjct: 343 RFDNKR----IVSGAYDGKIKVW---DLVAALDPRAPA-----------GTLCLRTLVEH 384
Query: 568 SLGVVQFDTTKNRFLAAGDDFSIKFWDM 595
S V + + + +++ D +I WD
Sbjct: 385 SGRVFRLQFDEFQIVSSSHDDTILIWDF 412
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 34/150 (22%)
Query: 474 VITCGDDKTIKVWDA---TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 530
++TC D++I VWD T+ + + GH A V V + ++I S + D IK W
Sbjct: 226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV----DFDDKYIVSASGDRTIKVW 281
Query: 531 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFS 589
+ + RT G KR + +Q+ ++R + +G D +
Sbjct: 282 --------------------NTSTCEFVRTLNG-HKRGIACLQY---RDRLVVSGSSDNT 317
Query: 590 IKFWDMDSVQLLTSIDADGGLPASPRIRFN 619
I+ WD++ L ++ L IRF+
Sbjct: 318 IRLWDIECGACLRVLEGHEELVRC--IRFD 345
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 79/199 (39%), Gaps = 36/199 (18%)
Query: 480 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW------LYD 533
D TIK+WD + I GH V +C + E + I + + D ++ W + +
Sbjct: 152 DNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERV--IITGSSDSTVRVWDVNTGEMLN 207
Query: 534 NLGSRVDYEAPGRW-------CTT--------MAYSADGT--RTYQGFRKRSLGVVQFDT 576
L + R+ C+ MA D T R G R ++ VV FD
Sbjct: 208 TLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA-AVNVVDFD- 265
Query: 577 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 636
++A D +IK W+ + + + +++ A + R L+ ++DN I++
Sbjct: 266 -DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR----LVVSGSSDNTIRL 320
Query: 637 LATSDG--IRLLRTFENLA 653
G +R+L E L
Sbjct: 321 WDIECGACLRVLEGHEELV 339
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 95/258 (36%), Gaps = 34/258 (13%)
Query: 415 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 474
V+ V+ S DG ++++ G R+ + H V +AFS N+Q +
Sbjct: 66 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQ--I 120
Query: 475 ITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ--FIFSTALDGKIKAWLY 532
++ DKTIK+W+ T G +Y + + C N I S D +K W
Sbjct: 121 VSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 179
Query: 533 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF---- 588
N + ++ + T+ S DG+ G + + + K+ + G D
Sbjct: 180 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 239
Query: 589 ---------------SIKFWDMDS-------VQLLTSIDADGGLPASPRIRFNKDGCLLA 626
SIK WD++ Q + S + P + ++ DG L
Sbjct: 240 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 299
Query: 627 VSTNDNGIKILATSDGIR 644
DN +++ + G R
Sbjct: 300 AGYTDNLVRVWQVTIGTR 317
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 91/210 (43%), Gaps = 38/210 (18%)
Query: 381 GSRERLVLRNFKVWD-LGACSMPLQAALVKDPGVSVNRVIWSPDGS---LFGVAYSRHIV 436
GSR++ + K+W+ LG C +Q + V+ V +SP+ S + + + +V
Sbjct: 123 GSRDKTI----KLWNTLGVCKYTVQD---ESHSEWVSCVRFSPNSSNPIIVSCGWDK-LV 174
Query: 437 QIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 496
++++ H+ H G +N + S P+ LC + G D +WD G Y
Sbjct: 175 KVWNLANCKLKTNHI---GHTGYLNTVTVS-PDGSLCA-SGGKDGQAMLWDLNEGKHLYT 229
Query: 497 FEGHE-------AP-VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-----DYEA 543
+G + +P Y +C +I+ L+GKI + D L V E
Sbjct: 230 LDGGDIINALCFSPNRYWLCAATGPSIKIW---DLEGKI---IVDELKQEVISTSSKAEP 283
Query: 544 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 573
P CT++A+SADG + G+ + V Q
Sbjct: 284 PQ--CTSLAWSADGQTLFAGYTDNLVRVWQ 311
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 95/258 (36%), Gaps = 34/258 (13%)
Query: 415 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 474
V+ V+ S DG ++++ G R+ + H V +AFS N+Q +
Sbjct: 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQ--I 143
Query: 475 ITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ--FIFSTALDGKIKAWLY 532
++ DKTIK+W+ T G +Y + + C N I S D +K W
Sbjct: 144 VSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202
Query: 533 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF---- 588
N + ++ + T+ S DG+ G + + + K+ + G D
Sbjct: 203 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 262
Query: 589 ---------------SIKFWDMDS-------VQLLTSIDADGGLPASPRIRFNKDGCLLA 626
SIK WD++ Q + S + P + ++ DG L
Sbjct: 263 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 322
Query: 627 VSTNDNGIKILATSDGIR 644
DN +++ + G R
Sbjct: 323 AGYTDNLVRVWQVTIGTR 340
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 91/210 (43%), Gaps = 38/210 (18%)
Query: 381 GSRERLVLRNFKVWD-LGACSMPLQAALVKDPGVSVNRVIWSPDGS---LFGVAYSRHIV 436
GSR++ + K+W+ LG C +Q + V+ V +SP+ S + + + +V
Sbjct: 146 GSRDKTI----KLWNTLGVCKYTVQD---ESHSEWVSCVRFSPNSSNPIIVSCGWDK-LV 197
Query: 437 QIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 496
++++ H+ H G +N + S P+ LC + G D +WD G Y
Sbjct: 198 KVWNLANCKLKTNHI---GHTGYLNTVTVS-PDGSLCA-SGGKDGQAMLWDLNEGKHLYT 252
Query: 497 FEGHE-------AP-VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-----DYEA 543
+G + +P Y +C +I+ L+GKI + D L V E
Sbjct: 253 LDGGDIINALCFSPNRYWLCAATGPSIKIW---DLEGKI---IVDELKQEVISTSSKAEP 306
Query: 544 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 573
P CT++A+SADG + G+ + V Q
Sbjct: 307 PQ--CTSLAWSADGQTLFAGYTDNLVRVWQ 334
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 89/218 (40%), Gaps = 29/218 (13%)
Query: 453 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK 512
+ H V + F HP + +++ +D TIKVWD G + +GH V + H
Sbjct: 104 LSGHRSPVTRVIF-HPVFSV-MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH- 160
Query: 513 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 572
+ + + S + D IK W + + RT G ++ V
Sbjct: 161 -SGKLLASCSADMTIKLWDFQGF--------------------ECIRTMHG-HDHNVSSV 198
Query: 573 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 632
+ ++A D +IK W++ + + + G +R N+DG L+A +ND
Sbjct: 199 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF--TGHREWVRMVRPNQDGTLIASCSNDQ 256
Query: 633 GIK--ILATSDGIRLLRTFENLAYDASRTSENSKPTIS 668
++ ++AT + LR ++ S E+S +IS
Sbjct: 257 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS 294
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 36/63 (57%)
Query: 865 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 924
+++ +D++I++++ + + LKGH+ + ++F H+ +L S AD + +W
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180
Query: 925 GWE 927
G+E
Sbjct: 181 GFE 183
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 480 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 534
DKTIK+WD + G GH+ V V H +FI S A D ++ W Y N
Sbjct: 317 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH--SGGKFILSCADDKTLRVWDYKN 369
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 530
+++C DDKT++VWD N HE V S+ H + ++ + ++D +K W
Sbjct: 353 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH--KTAPYVVTGSVDQTVKVW 407
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 484
SLFG + I+ + + +DAH VN ++F+ P + + T DKT+
Sbjct: 241 SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 299
Query: 485 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 538
+WD N K + FE H+ ++ V PH N + S+ D ++ W +G
Sbjct: 300 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLNVWDLSKIGEE 353
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 861 PQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFS-HALNVLVSSGADSQL 918
P I+A G D ++ ++++R ++K + H I + +S H +L SSG D +L
Sbjct: 283 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 342
Query: 919 CVW 921
VW
Sbjct: 343 NVW 345
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 82/215 (38%), Gaps = 27/215 (12%)
Query: 415 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 474
V V+ S DG ++++ G R+ + H V +AFS N+Q +
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV---GHTKDVLSVAFSLDNRQ--I 487
Query: 475 ITCGDDKTIKVWDATNGAKQYIFEGHEAPV-YSVCPHHKENIQ--FIFSTALDGKIKAWL 531
++ D+TIK+W+ K I EG E + C N I S + D +K W
Sbjct: 488 VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Query: 532 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK------------- 578
N R + +T+A S DG+ G + + + K
Sbjct: 548 LSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHA 607
Query: 579 -----NRF-LAAGDDFSIKFWDMDSVQLLTSIDAD 607
NR+ L A + IK WD++S ++ + D
Sbjct: 608 LCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVD 642
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 33/133 (24%)
Query: 455 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC--PHHK 512
H G V+ +A S P+ LC + G D + +WD G K Y E + ++++C P+
Sbjct: 559 GHTGYVSTVAVS-PDGSLCA-SGGKDGVVLLWDLAEGKKLYSLEANSV-IHALCFSPN-- 613
Query: 513 ENIQFIFSTALDGKIKAW------LYDNLGSRVDYEAPGR---------------WCTTM 551
++ A + IK W + ++L +VD +A +CT++
Sbjct: 614 ---RYWLCAATEHGIKIWDLESKSIVEDL--KVDLKAEAEKADNSGPAATKRKVIYCTSL 668
Query: 552 AYSADGTRTYQGF 564
+SADG+ + G+
Sbjct: 669 NWSADGSTLFSGY 681
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 26/169 (15%)
Query: 480 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 539
D +++WD G F GH V SV +N Q I S + D IK W + LG
Sbjct: 451 DGELRLWDLAAGVSTRRFVGHTKDVLSVA-FSLDNRQ-IVSASRDRTIKLW--NTLGE-- 504
Query: 540 DYEAPGRWCT-TMAYSADGTRTYQGFRKRSLGVVQF--DTTKNRFLAAGDDFSIKFWDMD 596
C T++ +G R + + V+F +T + ++A D ++K W++
Sbjct: 505 --------CKYTISEGGEGHRDW-------VSCVRFSPNTLQPTIVSASWDKTVKVWNLS 549
Query: 597 SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 645
+ +L +++ G ++ + + DG L A D + + ++G +L
Sbjct: 550 NCKLRSTLAGHTGYVST--VAVSPDGSLCASGGKDGVVLLWDLAEGKKL 596
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 29/49 (59%)
Query: 873 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 921
D +++++N+ +++S L GH+ ++ +A S ++ S G D + +W
Sbjct: 540 DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 89/503 (17%), Positives = 175/503 (34%), Gaps = 74/503 (14%)
Query: 451 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 510
L + H V FS ++ + +CG DKT++V+ A G K + HE V +C
Sbjct: 615 LVVRPHTDAVYHACFSEDGQR--IASCGADKTLQVFKAETGEKLLEIKAHEDEV--LCCA 670
Query: 511 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 570
+ +FI + ++D K+K W + + + TY ++ +
Sbjct: 671 FSTDDRFIATCSVDKKVKIW--------------------NSMTGELVHTYDEHSEQ-VN 709
Query: 571 VVQFDTTKNRFLAA--GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS 628
F + + L A D +K WD++ + ++ G + RF+ D LLA
Sbjct: 710 CCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTM--FGHTNSVNHCRFSPDDKLLASC 767
Query: 629 TNDNGIKIL-ATSDGIRLLRTFENLAYDASRTSENSKPTISPIXXXXXXXXXXXXXXXXX 687
+ D +K+ ATS R + + E+ + +
Sbjct: 768 SADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKI 827
Query: 688 XXM-VSIPGMNGDVRS-------LADVKPR----ITEESNDKSKVWKLTELSEPNQCRSL 735
+ G+ G++ + D P+ + S ++W S+ CR
Sbjct: 828 FLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRG- 886
Query: 736 RLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 795
+ + ++F+ G++ L + + LW+ ++ +NS+ V +
Sbjct: 887 ------HLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENE 940
Query: 796 SGIMMTNDV------------TDSNPEEAVPCFALSKNDSYV-MSASGGKISLFNXXXXX 842
++ + + D E V C LS + Y+ G I +
Sbjct: 941 VMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNR 1000
Query: 843 XXXXXXXXXXXXXXXXXHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF 902
+ +I+ DD+ IQ++N ++D+ L+GH + +
Sbjct: 1001 IFQSRFQHKKTVWHIQFTADEKTLIS-SSDDAEIQVWNWQLDKCIF-LRGHQETVKDFRL 1058
Query: 903 SHALNVLVSSGADSQLCVWSSDG 925
+S+L WS DG
Sbjct: 1059 L----------KNSRLLSWSFDG 1071
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 69/173 (39%), Gaps = 13/173 (7%)
Query: 862 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 921
+D IA D ++Q++ E ++K H + AFS + + D ++ +W
Sbjct: 631 EDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIW 690
Query: 922 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLECV 978
+S E + T + Q + F H L+ + L +++ + EC
Sbjct: 691 NSMTGE-------LVHTYDEHSEQVNC-CHFTNSSHHLLLATGSSDCFLKLWDLNQKECR 742
Query: 979 KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYL 1031
+S + H FS D +L+ +C D T+ ++ A + R IN +
Sbjct: 743 NTMFGHTNS--VNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFF 793
Score = 33.5 bits (75), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 97/247 (39%), Gaps = 55/247 (22%)
Query: 420 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 479
+SP L VA S++ V++++ +V + H+ V+ + FS +T D
Sbjct: 854 FSPQNHLAVVALSQYCVELWNTDSRSKVA---DCRGHLSWVHGVMFSPDGSSF--LTSSD 908
Query: 480 DKTIKVWDATNGAKQ----------YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 529
D+TI++W+ K +F+ +E V +V H +Q I +G+
Sbjct: 909 DQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAV--DHIRRLQLI-----NGRT-- 959
Query: 530 WLYDNLGSRVDY--EAPGRWCTT---MAYSADG-------------TRTYQGF--RKRSL 569
++DY EA C + Y A G R +Q K+++
Sbjct: 960 -------GQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTV 1012
Query: 570 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST 629
+QF + +++ DD I+ W+ QL I G R K+ LL+ S
Sbjct: 1013 WHIQFTADEKTLISSSDDAEIQVWNW---QLDKCIFLRGHQETVKDFRLLKNSRLLSWSF 1069
Query: 630 NDNGIKI 636
D +K+
Sbjct: 1070 -DGTVKV 1075
Score = 33.5 bits (75), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 2/124 (1%)
Query: 810 EEAVPCFALSKNDSYVMSAS-GGKISLFNXXX-XXXXXXXXXXXXXXXXXXXHPQDNNII 867
E+ V C A S +D ++ + S K+ ++N + + ++
Sbjct: 663 EDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLL 722
Query: 868 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 927
A G D ++++++ E ++ + GH+ + FS +L S AD L +W +
Sbjct: 723 ATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSAN 782
Query: 928 KQKN 931
++K+
Sbjct: 783 ERKS 786
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 25/123 (20%)
Query: 480 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 539
D T+KVW+ G K+ F H+ V S C + +F ST+ D K W +D L
Sbjct: 1070 DGTVKVWNIITGNKEKDFVCHQGTVLS-CDISHDATKF-SSTSADKTAKIWSFDLLLPLH 1127
Query: 540 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD-FSIKFWDMDSV 598
+ A+S D T LA GDD I+ W++ +
Sbjct: 1128 ELRGHNGCVRCSAFSVDST----------------------LLATGDDNGEIRIWNVSNG 1165
Query: 599 QLL 601
+LL
Sbjct: 1166 ELL 1168
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 867 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 926
IA G ++ +I+I + + + H K + + F+ L+SS D+++ VW+ W
Sbjct: 982 IAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWN---W 1038
Query: 927 EKQKNRFLQ 935
+ K FL+
Sbjct: 1039 QLDKCIFLR 1047
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 484
SLFG + I+ + + +DAH VN ++F+ P + + T DKT+
Sbjct: 245 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 303
Query: 485 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 538
+WD N K + FE H+ ++ V PH N + S+ D ++ W +G
Sbjct: 304 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIGEE 357
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 14/143 (9%)
Query: 889 KLKGHSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFL---QIPTGRTPTA 944
+L+GH K GL+++ LN L+S+ D +C+W + K+ +R + I TG T
Sbjct: 176 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE-HRVIDAKNIFTGHTAVV 234
Query: 945 QSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES----SAPITHATFSCDSQ 1000
+ D + + V + +L I++T K P + +A + +F+ S+
Sbjct: 235 E-DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK---PSHTVDAHTAEVNCLSFNPYSE 290
Query: 1001 LVYAC-FLDATVCVFSAANLKLR 1022
+ A D TV ++ NLKL+
Sbjct: 291 FILATGSADKTVALWDLRNLKLK 313
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 65/179 (36%), Gaps = 36/179 (20%)
Query: 468 PNKQLCVITCGDDKTIKVWDATNGAKQY-------IFEGHEAPVYSVCPHHKENIQFIFS 520
PN +++ DD TI +WD K++ IF GH A V V H F S
Sbjct: 191 PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF-GS 249
Query: 521 TALDGKIKAWLYDNLGSR-----VDYEAPGRWCTTM---------AYSADGTRTYQGFRK 566
A D K+ W N + VD C + SAD T R
Sbjct: 250 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 309
Query: 567 RSLGVVQFDTTKNRFL-------------AAGDDFSIKFWDMDSV-QLLTSIDADGGLP 611
L + F++ K+ ++G D + WD+ + + ++ DA+ G P
Sbjct: 310 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 368
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 861 PQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFS-HALNVLVSSGADSQL 918
P I+A G D ++ ++++R ++K + H I + +S H +L SSG D +L
Sbjct: 287 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 346
Query: 919 CVW 921
VW
Sbjct: 347 HVW 349
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 484
SLFG + I+ + + +DAH VN ++F+ P + + T DKT+
Sbjct: 247 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 305
Query: 485 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 538
+WD N K + FE H+ ++ V PH N + S+ D ++ W +G
Sbjct: 306 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIGEE 359
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 14/143 (9%)
Query: 889 KLKGHSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFL---QIPTGRTPTA 944
+L+GH K GL+++ LN L+S+ D +C+W + K+ +R + I TG T
Sbjct: 178 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE-HRVIDAKNIFTGHTAVV 236
Query: 945 QSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES----SAPITHATFSCDSQ 1000
+ D + + V + +L I++T K P + +A + +F+ S+
Sbjct: 237 E-DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK---PSHTVDAHTAEVNCLSFNPYSE 292
Query: 1001 LVYAC-FLDATVCVFSAANLKLR 1022
+ A D TV ++ NLKL+
Sbjct: 293 FILATGSADKTVALWDLRNLKLK 315
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 65/179 (36%), Gaps = 36/179 (20%)
Query: 468 PNKQLCVITCGDDKTIKVWDATNGAKQY-------IFEGHEAPVYSVCPHHKENIQFIFS 520
PN +++ DD TI +WD K++ IF GH A V V H F S
Sbjct: 193 PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF-GS 251
Query: 521 TALDGKIKAWLYDNLGSR-----VDYEAPGRWCTTM---------AYSADGTRTYQGFRK 566
A D K+ W N + VD C + SAD T R
Sbjct: 252 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 311
Query: 567 RSLGVVQFDTTKNRFL-------------AAGDDFSIKFWDMDSV-QLLTSIDADGGLP 611
L + F++ K+ ++G D + WD+ + + ++ DA+ G P
Sbjct: 312 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 370
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 861 PQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFS-HALNVLVSSGADSQL 918
P I+A G D ++ ++++R ++K + H I + +S H +L SSG D +L
Sbjct: 289 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 348
Query: 919 CVW 921
VW
Sbjct: 349 HVW 351
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 484
SLFG + I+ + + +DAH VN ++F+ P + + T DKT+
Sbjct: 249 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 307
Query: 485 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 538
+WD N K + FE H+ ++ V PH N + S+ D ++ W +G
Sbjct: 308 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIGEE 361
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 14/143 (9%)
Query: 889 KLKGHSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFL---QIPTGRTPTA 944
+L+GH K GL+++ LN L+S+ D +C+W + K+ +R + I TG T
Sbjct: 180 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE-HRVIDAKNIFTGHTAVV 238
Query: 945 QSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES----SAPITHATFSCDSQ 1000
+ D + + V + +L I++T K P + +A + +F+ S+
Sbjct: 239 E-DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK---PSHTVDAHTAEVNCLSFNPYSE 294
Query: 1001 LVYAC-FLDATVCVFSAANLKLR 1022
+ A D TV ++ NLKL+
Sbjct: 295 FILATGSADKTVALWDLRNLKLK 317
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 65/179 (36%), Gaps = 36/179 (20%)
Query: 468 PNKQLCVITCGDDKTIKVWDATNGAKQY-------IFEGHEAPVYSVCPHHKENIQFIFS 520
PN +++ DD TI +WD K++ IF GH A V V H F S
Sbjct: 195 PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF-GS 253
Query: 521 TALDGKIKAWLYDNLGSR-----VDYEAPGRWCTTM---------AYSADGTRTYQGFRK 566
A D K+ W N + VD C + SAD T R
Sbjct: 254 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 313
Query: 567 RSLGVVQFDTTKNRFL-------------AAGDDFSIKFWDMDSV-QLLTSIDADGGLP 611
L + F++ K+ ++G D + WD+ + + ++ DA+ G P
Sbjct: 314 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 372
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 861 PQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFS-HALNVLVSSGADSQL 918
P I+A G D ++ ++++R ++K + H I + +S H +L SSG D +L
Sbjct: 291 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 350
Query: 919 CVW 921
VW
Sbjct: 351 HVW 353
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 85/222 (38%), Gaps = 33/222 (14%)
Query: 342 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSM 401
++ R N SS ++ F+ Q +L G N G+I +WD+ C+
Sbjct: 105 SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF----------------IWDMNKCTE 148
Query: 402 PLQAALVKDPG---VSVNRVI---WSPD-GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID 454
PG SV+ VI W+ +F A S + I+ EV HL
Sbjct: 149 SPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVI-HLSYT 207
Query: 455 AHVGGVND---IAFSHPNKQLCVITC---GDDKTIKVWDATNGAK--QYIFEGHEAPVYS 506
+ G+ + HP V T +D +I +WD N Q + +GH+ + S
Sbjct: 208 SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILS 267
Query: 507 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWC 548
+ H++ + S+ D + W ++ + A G WC
Sbjct: 268 LDWCHQDE-HLLLSSGRDNTVLLWNPESAEQLSQFPARGNWC 308
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 12/86 (13%)
Query: 862 QDNNIIAIGMDDSSIQIY--NVRVDEVKS--KLKGHSKRITGLAFSHAL-NVLVSSGADS 916
+N IIA +D+ S+++Y N + + S + HS + + F+ NVL S G +
Sbjct: 77 HNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNG 136
Query: 917 QLCVWSSDGWEKQKNRFLQIPTGRTP 942
++ +W N+ + P+ TP
Sbjct: 137 EIFIW-------DMNKCTESPSNYTP 155
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 860 HPQDNNIIAIGM---DDSSIQIYNVRVDE--VKSKLKGHSKRITGLAFSHA-LNVLVSSG 913
HP+++ +A +D SI I+++R +++ +GH K I L + H ++L+SSG
Sbjct: 223 HPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSG 282
Query: 914 ADSQLCVWSSDGWEK 928
D+ + +W+ + E+
Sbjct: 283 RDNTVLLWNPESAEQ 297
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 450 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC- 508
H + H V+D+A S N I+ DKT+++WD G F GH++ VYSV
Sbjct: 69 HKALTGHNHFVSDLALSQEN--CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAF 126
Query: 509 -PHHKENIQFIFSTALDGKIKAW--LYDNLGSRVDYEAPGRWCTTMAYS 554
P +++ I S + +IK W L + S + E W + + YS
Sbjct: 127 SPDNRQ----ILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYS 171
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/50 (22%), Positives = 29/50 (58%)
Query: 873 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
D +++++++R + GH + +AFS ++S+GA+ ++ +W+
Sbjct: 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 32/191 (16%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
+V + ++ DG + ++Q++++ GD V + AH V D ++
Sbjct: 1012 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF----LQAHQETVKDFRLLQDSR--- 1064
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
+++ D T+KVW+ G + F H+ V S C + +F ST+ D K W +D
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLS-CAISSDATKF-SSTSADKTAKIWSFD 1122
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD-FSIKF 592
L + + A+S DG LA GDD I+
Sbjct: 1123 LLSPLHELKGHNGCVRCSAFSLDGI----------------------LLATGDDNGEIRI 1160
Query: 593 WDMDSVQLLTS 603
W++ QLL S
Sbjct: 1161 WNVSDGQLLHS 1171
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
+V +S DG + +Q++ G+++ L+I AH V AFS +
Sbjct: 624 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKL---LDIKAHEDEVLCCAFSSDDSY-- 678
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 530
+ TC DK +K+WD+ G + ++ H V +K N + + + D +K W
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 735
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 72/191 (37%), Gaps = 35/191 (18%)
Query: 455 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKE 513
H V I F+ K L I+ +D I+VW+ G Y+F + H+ V
Sbjct: 1008 GHKKAVRHIQFTADGKTL--ISSSEDSVIQVWNWQTG--DYVFLQAHQETVKDFRLLQDS 1063
Query: 514 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM--AYSADGTRTYQGFRKRSLGV 571
+ S + DG +K W + + R++ + T + A S+D T+
Sbjct: 1064 RL---LSWSFDGTVKVW--NVITGRIERDFTCHQGTVLSCAISSDATK------------ 1106
Query: 572 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 631
F + D + K W D + L + G F+ DG LLA ++
Sbjct: 1107 ---------FSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSA--FSLDGILLATGDDN 1155
Query: 632 NGIKILATSDG 642
I+I SDG
Sbjct: 1156 GEIRIWNVSDG 1166
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
Query: 810 EEAVPCFALSKNDSYVMSASGGK-ISLFNXXXXXXXXXXXXXXXXXXXXXXHPQDNNII- 867
E+ V C A S +DSY+ + S K + +++ + N+++
Sbjct: 664 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 723
Query: 868 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 921
A G +D ++++++ E ++ + GH+ + FS +L S AD L +W
Sbjct: 724 ATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 95/260 (36%), Gaps = 53/260 (20%)
Query: 420 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 479
+S D S + V+I+ G V + D H VN F++ + L + T +
Sbjct: 672 FSSDDSYIATCSADKKVKIWDSATGKLVHTY---DEHSEQVNCCHFTNKSNHLLLATGSN 728
Query: 480 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 539
D +K+WD + GH V + C ++ + + S + DG ++ W + R
Sbjct: 729 DFFLKLWDLNQKECRNTMFGHTNSV-NHCRFSPDD-ELLASCSADGTLRLWDVRSANERK 786
Query: 540 ----------------DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 583
D E + C+ +SADG + + + V+ FD + LA
Sbjct: 787 SINVKRFFLSSEDPPEDVEVIVKCCS---WSADGDKIIVAAKNK---VLLFDIHTSGLLA 840
Query: 584 ------------------------AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN 619
A + ++ W++DS L D G L + F+
Sbjct: 841 EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS--RLKVADCRGHLSWVHGVMFS 898
Query: 620 KDGCLLAVSTNDNGIKILAT 639
DG +++D I++ T
Sbjct: 899 PDGSSFLTASDDQTIRVWET 918
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 68/178 (38%), Gaps = 23/178 (12%)
Query: 862 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 921
QD IA D ++Q++ E +K H + AFS + + + AD ++ +W
Sbjct: 632 QDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW 691
Query: 922 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ-----FHQDQIHFLVV---HETQLAIFETT 973
S TG+ + Q F H L+ ++ L +++
Sbjct: 692 DS-------------ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 738
Query: 974 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYL 1031
+ EC +S + H FS D +L+ +C D T+ ++ + R IN +
Sbjct: 739 QKECRNTMFGHTNS--VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 794
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 867 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 926
+A G +D +I+I + + V S GH K + + F+ L+SS DS + VW+ W
Sbjct: 983 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN---W 1039
Query: 927 EKQKNRFLQ 935
+ FLQ
Sbjct: 1040 QTGDYVFLQ 1048
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 32/191 (16%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
+V + ++ DG + ++Q++++ GD V + AH V D ++
Sbjct: 1005 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF----LQAHQETVKDFRLLQDSR--- 1057
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
+++ D T+KVW+ G + F H+ V S C + +F ST+ D K W +D
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLS-CAISSDATKF-SSTSADKTAKIWSFD 1115
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD-FSIKF 592
L + + A+S DG LA GDD I+
Sbjct: 1116 LLSPLHELKGHNGCVRCSAFSLDGI----------------------LLATGDDNGEIRI 1153
Query: 593 WDMDSVQLLTS 603
W++ QLL S
Sbjct: 1154 WNVSDGQLLHS 1164
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
+V +S DG + +Q++ G+++ L+I AH V AFS +
Sbjct: 617 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKL---LDIKAHEDEVLCCAFSSDDSY-- 671
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 530
+ TC DK +K+WD+ G + ++ H V +K N + + + D +K W
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 728
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 72/191 (37%), Gaps = 35/191 (18%)
Query: 455 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKE 513
H V I F+ K L I+ +D I+VW+ G Y+F + H+ V
Sbjct: 1001 GHKKAVRHIQFTADGKTL--ISSSEDSVIQVWNWQTG--DYVFLQAHQETVKDFRLLQDS 1056
Query: 514 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM--AYSADGTRTYQGFRKRSLGV 571
+ S + DG +K W + + R++ + T + A S+D T+
Sbjct: 1057 RL---LSWSFDGTVKVW--NVITGRIERDFTCHQGTVLSCAISSDATK------------ 1099
Query: 572 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 631
F + D + K W D + L + G F+ DG LLA ++
Sbjct: 1100 ---------FSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSA--FSLDGILLATGDDN 1148
Query: 632 NGIKILATSDG 642
I+I SDG
Sbjct: 1149 GEIRIWNVSDG 1159
Score = 37.4 bits (85), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
Query: 810 EEAVPCFALSKNDSYVMSASGGK-ISLFNXXXXXXXXXXXXXXXXXXXXXXHPQDNNII- 867
E+ V C A S +DSY+ + S K + +++ + N+++
Sbjct: 657 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 716
Query: 868 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 921
A G +D ++++++ E ++ + GH+ + FS +L S AD L +W
Sbjct: 717 ATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 95/260 (36%), Gaps = 53/260 (20%)
Query: 420 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 479
+S D S + V+I+ G V + D H VN F++ + L + T +
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGKLVHTY---DEHSEQVNCCHFTNKSNHLLLATGSN 721
Query: 480 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 539
D +K+WD + GH V + C ++ + + S + DG ++ W + R
Sbjct: 722 DFFLKLWDLNQKECRNTMFGHTNSV-NHCRFSPDD-ELLASCSADGTLRLWDVRSANERK 779
Query: 540 ----------------DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 583
D E + C+ +SADG + + + V+ FD + LA
Sbjct: 780 SINVKRFFLSSEDPPEDVEVIVKCCS---WSADGDKIIVAAKNK---VLLFDIHTSGLLA 833
Query: 584 ------------------------AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN 619
A + ++ W++DS L D G L + F+
Sbjct: 834 EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS--RLKVADCRGHLSWVHGVMFS 891
Query: 620 KDGCLLAVSTNDNGIKILAT 639
DG +++D I++ T
Sbjct: 892 PDGSSFLTASDDQTIRVWET 911
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 68/178 (38%), Gaps = 23/178 (12%)
Query: 862 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 921
QD IA D ++Q++ E +K H + AFS + + + AD ++ +W
Sbjct: 625 QDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW 684
Query: 922 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ-----FHQDQIHFLVV---HETQLAIFETT 973
S TG+ + Q F H L+ ++ L +++
Sbjct: 685 DS-------------ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 974 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYL 1031
+ EC +S + H FS D +L+ +C D T+ ++ + R IN +
Sbjct: 732 QKECRNTMFGHTNS--VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 787
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 867 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 926
+A G +D +I+I + + V S GH K + + F+ L+SS DS + VW+ W
Sbjct: 976 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN---W 1032
Query: 927 EKQKNRFLQ 935
+ FLQ
Sbjct: 1033 QTGDYVFLQ 1041
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 484
SLFG + I+ + +DAH VN ++F+ P + + T DKT+
Sbjct: 243 SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 301
Query: 485 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 538
+WD N K + FE H+ ++ V PH N + S+ D ++ W +G
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPH---NETILASSGTDRRLNVWDLSKIGEE 355
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 861 PQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFS-HALNVLVSSGADSQL 918
P I+A G D ++ ++++R ++K + H I + +S H +L SSG D +L
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 344
Query: 919 CVW 921
VW
Sbjct: 345 NVW 347
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 64/173 (36%), Gaps = 36/173 (20%)
Query: 474 VITCGDDKTIKVWDATNGAKQ-------YIFEGHEAPVYSVCPHHKENIQFIFSTALDGK 526
+++ DD T+ +WD G K+ IF GH A V V H F S A D K
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLF-GSVADDQK 253
Query: 527 IKAW-LYDNLGSR----VDYEAPGRWCTTM---------AYSADGTRTYQGFRKRSLGVV 572
+ W N S+ VD C + SAD T R L +
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 573 QFDTTKNRFL-------------AAGDDFSIKFWDMDSV-QLLTSIDADGGLP 611
F++ K+ ++G D + WD+ + + ++ DA+ G P
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPP 366
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 454 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHH 511
+AH ++D + K+L TC DKTIK+++ + I GHE PV+ V H
Sbjct: 6 NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 512 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 547
+ + S + DGK+ W +N GRW
Sbjct: 64 PKFGTILASCSYDGKVLIWKEEN----------GRW 89
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 424 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID---AHVGGVNDIAFSHPNKQLCVITCGDD 480
G S ++I+ G H ID H G V + ++HP + +C D
Sbjct: 21 GKRLATCSSDKTIKIFEVEG----ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76
Query: 481 KTIKVWDATNG--AKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKI 527
+ +W NG ++ + H A V SV PH + + S+ DGK+
Sbjct: 77 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS--DGKV 125
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 484
SLFG + I+ + +DAH VN ++F+ P + + T DKT+
Sbjct: 243 SLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 301
Query: 485 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 538
+WD N K + FE H+ ++ V PH N + S+ D ++ W +G
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPH---NETILASSGTDRRLNVWDLSKIGEE 355
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 861 PQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFS-HALNVLVSSGADSQL 918
P I+A G D ++ ++++R ++K + H I + +S H +L SSG D +L
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 344
Query: 919 CVW 921
VW
Sbjct: 345 NVW 347
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 64/173 (36%), Gaps = 36/173 (20%)
Query: 474 VITCGDDKTIKVWDATNGAKQ-------YIFEGHEAPVYSVCPHHKENIQFIFSTALDGK 526
+++ DD T+ +WD G K+ IF GH A V V H F S A D K
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLF-GSVADDQK 253
Query: 527 IKAW-LYDNLGSR----VDYEAPGRWCTTM---------AYSADGTRTYQGFRKRSLGVV 572
+ W N S+ VD C + SAD T R L +
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 573 QFDTTKNRFL-------------AAGDDFSIKFWDMDSV-QLLTSIDADGGLP 611
F++ K+ ++G D + WD+ + + ++ DA+ G P
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPP 366
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 65/170 (38%), Gaps = 26/170 (15%)
Query: 499 GHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 556
GH APV + CPH N I S + D + W + G + P
Sbjct: 79 GHTAPVLDIAWCPH---NDNVIASGSEDCTVMVWEIPDGGLVLPLREP------------ 123
Query: 557 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRI 616
T +G KR V T +N L+AG D I WD+ + + ++ D +
Sbjct: 124 -VITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
Query: 617 RFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 666
+++DG L+ S D ++++ G + + R E ++P
Sbjct: 183 DWSRDGALICTSCRDKRVRVIEPRKG--------TVVAEKDRPHEGTRPV 224
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 8/69 (11%)
Query: 861 PQDNNIIAIGMDDSSIQIYNVR-------VDEVKSKLKGHSKRITGLAFS-HALNVLVSS 912
P ++N+IA G +D ++ ++ + + E L+GH+KR+ +A+ A NVL+S+
Sbjct: 91 PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSA 150
Query: 913 GADSQLCVW 921
G D+ + VW
Sbjct: 151 GCDNVILVW 159
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 451 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF--EGHEAPVYSV 507
+ ++ H V +A+ HP Q +++ G D I VWD GA + H +YSV
Sbjct: 125 ITLEGHTKRVGIVAW-HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 107/303 (35%), Gaps = 73/303 (24%)
Query: 389 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR 448
RN VW+ A S + A D V V WS DGS V +V IY ++R
Sbjct: 113 RNVYVWN--ADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR 170
Query: 449 QHLEIDAHVG-----------GVNDIAFSH-----PNKQLCVI----------------- 475
A VG G A H N Q+ +
Sbjct: 171 TMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL 230
Query: 476 ---TCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAW 530
+ G+D +++WDA + ++ H A V +V CP + N+ +D +I W
Sbjct: 231 QLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP-WQSNLLATGGGTMDKQIHFW 289
Query: 531 LYDNLGSRVDYEAPGRWCTTMAYS--ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 588
G+RV+ G T++ +S + + GF D
Sbjct: 290 -NAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGF---------------------PDN 327
Query: 589 SIKFWDMDSVQLLTSIDADGGLPA-SPRIRFNK---DGCLLAVSTNDNGIKILATSDGIR 644
++ W S L +D +PA R+ ++ DG +L+ + +D +K DG
Sbjct: 328 NLSIWSYSSSGLTKQVD----IPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDH 383
Query: 645 LLR 647
+ R
Sbjct: 384 VKR 386
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 454 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHH 511
+AH ++D + K+L TC DKTIK+++ + I GHE PV+ V H
Sbjct: 8 NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 65
Query: 512 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 547
+ + S + DGK+ W +N GRW
Sbjct: 66 PKFGTILASCSYDGKVLIWKEEN----------GRW 91
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 424 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID---AHVGGVNDIAFSHPNKQLCVITCGDD 480
G S ++I+ G H ID H G V + ++HP + +C D
Sbjct: 23 GKRLATCSSDKTIKIFEVEG----ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 78
Query: 481 KTIKVWDATNG--AKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKI 527
+ +W NG ++ + H A V SV PH + + S+ DGK+
Sbjct: 79 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS--DGKV 127
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 14/103 (13%)
Query: 454 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHH 511
+AH ++D + K+L TC DKTIK+++ + I GHE PV+ V H
Sbjct: 6 NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 512 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 554
+ + S + DGK+ W +N GRW ++
Sbjct: 64 PKFGTILASCSYDGKVLIWKEEN----------GRWSQIAVHA 96
Score = 29.6 bits (65), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 424 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID---AHVGGVNDIAFSHPNKQLCVITCGDD 480
G S ++I+ G H ID H G V + ++HP + +C D
Sbjct: 21 GKRLATCSSDKTIKIFEVEG----ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76
Query: 481 KTIKVWDATNG--AKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKI 527
+ +W NG ++ + H A V SV PH + + S+ DGK+
Sbjct: 77 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS--DGKV 125
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 467 HPNKQLCVITCGDDKTIKVWDATNGAKQY-IFEGHEAPVYSVCPHHKENIQFIFSTALDG 525
HPN+Q V T G D + +WD G + + HEA ++ V H N + +F+ + DG
Sbjct: 245 HPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEV-HFHPSNPEHLFTCSEDG 303
Query: 526 KIKAW 530
+ W
Sbjct: 304 SLWHW 308
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 454 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHH 511
+AH ++D + K++ TC DKTIK+++ + I GHE PV+ V H
Sbjct: 6 NAHNEMIHDAVMDYYGKRMA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 512 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 547
+ + S + DGK+ W +N GRW
Sbjct: 64 PKFGTILASCSYDGKVMIWKEEN----------GRW 89
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 424 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID---AHVGGVNDIAFSHPNKQLCVITCGDD 480
G S ++I+ G H ID H G V + ++HP + +C D
Sbjct: 21 GKRMATCSSDKTIKIFEVEG----ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76
Query: 481 KTIKVWDATNG--AKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKI 527
+ +W NG ++ + H A V SV PH + + S+ DGK+
Sbjct: 77 GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS--DGKV 125
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 118/294 (40%), Gaps = 69/294 (23%)
Query: 376 GLWEVGSRERLVL-----RNFKVW--DLGACSMPL--QAALVKDPGVSVNRVI-WSPDGS 425
G+W R+ +++ R KVW + G C L + V+ + RV+ S D +
Sbjct: 161 GVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDAT 220
Query: 426 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 485
L +++ G + + HV V + + V++ D +KV
Sbjct: 221 L----------RVWDIETGQCLHVLM---GHVAAVRCVQYDGRR----VVSGAYDFMVKV 263
Query: 486 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQF----IFSTALDGKIKAWLYDNLGSRVDY 541
WD + +GH VYS +QF + S +LD I+ W D
Sbjct: 264 WDPETETCLHTLQGHTNRVYS--------LQFDGIHVVSGSLDTSIRVW---------DV 306
Query: 542 EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DFSIKFWDMDSVQL 600
E + + T G + + G+ K+ L +G+ D ++K WD+ + Q
Sbjct: 307 E-----------TGNCIHTLTGHQSLTSGM----ELKDNILVSGNADSTVKIWDIKTGQC 351
Query: 601 LTSIDA-DGGLPASPRIRFNKDGCLLAVSTNDNGIKI--LATSDGIRLLRTFEN 651
L ++ + A ++FNK+ + S++D +K+ L T + IR L T E+
Sbjct: 352 LQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFIRNLVTLES 403
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 27/161 (16%)
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
V++ D +I+VWD G + GH++ + K+NI + S D +K W
Sbjct: 292 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM--ELKDNI--LVSGNADSTVKIW--- 344
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
D + + +T QG K V KN + + DD ++K W
Sbjct: 345 ------DIK-----------TGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 387
Query: 594 DMDS---VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 631
D+ + ++ L ++++ G RIR + + AV + +
Sbjct: 388 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 428
Score = 36.6 bits (83), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 53/148 (35%), Gaps = 32/148 (21%)
Query: 471 QLC---VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKI 527
Q C +++ DD T+KVW A G GH V+S ++NI I S + D +
Sbjct: 126 QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS--SQMRDNI--IISGSTDRTL 181
Query: 528 KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV---------------- 571
K W + + G T R G R +L V
Sbjct: 182 KVWNAET--GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHV 239
Query: 572 -----VQFDTTKNRFLAAGDDFSIKFWD 594
VQ+D R ++ DF +K WD
Sbjct: 240 AAVRCVQYD--GRRVVSGAYDFMVKVWD 265
Score = 33.1 bits (74), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 867 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 926
+ G D+SI++++V L GH +G+ N+LVS ADS + + W
Sbjct: 292 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKI-----W 344
Query: 927 EKQKNRFLQIPTGRTPTAQSDTRVQFHQD 955
+ + + LQ G + T +QF+++
Sbjct: 345 DIKTGQCLQTLQGPNKHQSAVTCLQFNKN 373
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 864 NNIIAIGMDDSSIQIYNVRVDEVKSKLKG---HSKRITGLAFSHALNVLVSSGADSQLCV 920
+NI+ G DS+++I++++ + L+G H +T L F+ N +++S D + +
Sbjct: 329 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKL 386
Query: 921 W 921
W
Sbjct: 387 W 387
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 42/189 (22%), Positives = 75/189 (39%), Gaps = 31/189 (16%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLE----IDAHVGGVNDIAFSHPN 469
++ V W P SL V I++ + ++ I+ H V +A+S N
Sbjct: 60 AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS--N 117
Query: 470 KQLCVITCGDDKTIKVWDATNGAKQY----IFEGHEAPVYSVCPHHKENIQFIFSTALDG 525
+ TC DK++ +W+ ++Y + + H V V H E + + S++ D
Sbjct: 118 DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEAL--LASSSYDD 175
Query: 526 KIKAWL-YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 584
++ W YD+ D+E C + +GT F K GV R +
Sbjct: 176 TVRIWKDYDD-----DWE-----CVAVLNGHEGTVWSSDFDKTE-GVF-------RLCSG 217
Query: 585 GDDFSIKFW 593
DD +++ W
Sbjct: 218 SDDSTVRVW 226
Score = 33.1 bits (74), Expect = 0.93, Method: Composition-based stats.
Identities = 39/172 (22%), Positives = 71/172 (41%), Gaps = 17/172 (9%)
Query: 364 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 423
+LL G+ + +W ++E R F++ DL A+++ V V WS D
Sbjct: 71 SLLAAGSFDSTVSIW---AKEESADRTFEM-DL--------LAIIEGHENEVKGVAWSND 118
Query: 424 GSLFGVAYSRHIVQIY-SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT 482
G V I+ + G+E + H V + + HP++ L + DD T
Sbjct: 119 GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW-HPSEALLASSSYDD-T 176
Query: 483 IKVWDATNGAKQ--YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 532
+++W + + + GHE V+S E + + S + D ++ W Y
Sbjct: 177 VRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY 228
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 8/69 (11%)
Query: 861 PQDNNIIAIGMDDSSIQIYNVR-------VDEVKSKLKGHSKRITGLAFS-HALNVLVSS 912
P ++N+IA G +D ++ ++ + + E L+GH+KR+ +A+ A NVL+S+
Sbjct: 91 PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSA 150
Query: 913 GADSQLCVW 921
G D+ + VW
Sbjct: 151 GXDNVILVW 159
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 65/173 (37%), Gaps = 26/173 (15%)
Query: 496 IFEGHEAPVYSVC--PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAY 553
+ GH APV + PH N I S + D + W + G + P
Sbjct: 76 LVXGHTAPVLDIAWXPH---NDNVIASGSEDCTVMVWEIPDGGLVLPLREP--------- 123
Query: 554 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPAS 613
T +G KR V T +N L+AG D I WD+ + + ++ D
Sbjct: 124 ----VITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTI 179
Query: 614 PRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 666
+ +++DG L+ S D ++++ G + + R E ++P
Sbjct: 180 YSVDWSRDGALICTSCRDKRVRVIEPRKG--------TVVAEKDRPHEGTRPV 224
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 451 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF--EGHEAPVYSV 507
+ ++ H V +A+ HP Q +++ G D I VWD GA + H +YSV
Sbjct: 125 ITLEGHTKRVGIVAW-HPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 455 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKEN 514
H G ++ + F+ NK L ++ DD T+++W NG Q F GH + S +
Sbjct: 245 GHHGPISVLEFNDTNKLL--LSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK 302
Query: 515 IQFIFSTALDGKIKAW 530
+ S ++DG ++ W
Sbjct: 303 ---VISCSMDGSVRLW 315
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 709 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL 768
RI E + K WKLT ++E +L +++ L +++ GN+I+ N
Sbjct: 74 RIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELR 133
Query: 769 LW 770
LW
Sbjct: 134 LW 135
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 65/168 (38%), Gaps = 31/168 (18%)
Query: 468 PNKQLCVITCGDDKTIKVWDATNGAKQYIF-----EGHEAPVYSVCPHHKENIQFIFSTA 522
P+++ +IT D+T +WD T G + IF GH A V S+ + N S +
Sbjct: 167 PDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL-SINSLNANMFISGS 225
Query: 523 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 582
D ++ W + ++ RTY G + + V+F RF
Sbjct: 226 CDTTVRLW-------------------DLRITSRAVRTYHG-HEGDINSVKFFPDGQRFG 265
Query: 583 AAGDDFSIKFWDMDSVQLLTSIDA-----DGGLPASPRIRFNKDGCLL 625
DD + + +DM + L + D LP + F+ G LL
Sbjct: 266 TGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLL 313
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 14/103 (13%)
Query: 454 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHH 511
+AH ++D + K+ TC DKTIK+++ + I GHE PV+ V H
Sbjct: 6 NAHNEXIHDAVXDYYGKRXA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 512 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 554
+ + S + DGK+ W +N GRW ++
Sbjct: 64 PKFGTILASCSYDGKVXIWKEEN----------GRWSQIAVHA 96
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 476 TCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
TC D+++K++D NG + I GHE PV+ V H + S + D K+ W +
Sbjct: 30 TCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREE 89
Query: 534 NLGSRVDYEAPGR 546
N +E G
Sbjct: 90 NGTWEKSHEHAGH 102
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 16/128 (12%)
Query: 424 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 483
G+ S V+I+ G ++ ++ H G V +A++HP + +C D+ +
Sbjct: 25 GTRLATCSSDRSVKIFDVRNGGQILI-ADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83
Query: 484 KVWDATNGA--KQYIFEGHEAPVYSVC--PHHKENIQFIFSTALDGKIKAWLYDNLGSRV 539
+W NG K + GH++ V SVC PH I S+ DG I S +
Sbjct: 84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSS--DGAI---------SLL 132
Query: 540 DYEAPGRW 547
Y G+W
Sbjct: 133 TYTGEGQW 140
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 23/148 (15%)
Query: 459 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-------AKQYIFEGHEAPVYSVCPHH 511
GV +A S P + D+ ++VWD+ G ++ GH+ VYSV
Sbjct: 208 GVTTVAVS-PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV--F 264
Query: 512 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 571
+ Q + S +LD +K W N ++ D + P S TY G + L V
Sbjct: 265 TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN--------SGTCEVTYIGHKDFVLSV 316
Query: 572 VQFDTTKN--RFLAAGDDFSIKFWDMDS 597
TT+N L+ D + FWD S
Sbjct: 317 A---TTQNDEYILSGSKDRGVLFWDKKS 341
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 74/183 (40%), Gaps = 32/183 (17%)
Query: 460 VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIF 519
+ + FS K L T +D+ I++WD N I +GHE +YS+ + + +
Sbjct: 126 IRSVCFSPDGKFLA--TGAEDRLIRIWDIENRKIVMILQGHEQDIYSL--DYFPSGDKLV 181
Query: 520 STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 579
S + D ++ W + C+ DG T V
Sbjct: 182 SGSGDRTVRIW-----------DLRTGQCSLTLSIEDGVTT-----------VAVSPGDG 219
Query: 580 RFLAAGD-DFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNG 633
+++AAG D +++ WD ++ L+ +D++ G + + F +DG + + D
Sbjct: 220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279
Query: 634 IKI 636
+K+
Sbjct: 280 VKL 282
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
D +A G +D I+I+++ ++ L+GH + I L + + + LVS D + +W
Sbjct: 134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW- 192
Query: 923 SDGWEKQKNRFLQIPTGRTPTAQS 946
D Q + L I G T A S
Sbjct: 193 -DLRTGQCSLTLSIEDGVTTVAVS 215
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 32/198 (16%)
Query: 452 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC--P 509
++ H V+D+A S N ++ D ++++W+ NG QY F GH V SV P
Sbjct: 62 RLEGHSAFVSDVALS--NNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSP 119
Query: 510 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 569
+++ I S D ++ W G T++ +G +
Sbjct: 120 DNRQ----IVSGGRDNALRVW-----------NVKGECMHTLS---------RGAHTDWV 155
Query: 570 GVVQFDTTKNR--FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV 627
V+F + + ++ G D +K WD+ + +L+T D G + + DG L A
Sbjct: 156 SCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVT--DLKGHTNYVTSVTVSPDGSLCAS 213
Query: 628 STNDNGIKILATSDGIRL 645
S D ++ + G L
Sbjct: 214 SDKDGVARLWDLTKGEAL 231
Score = 37.0 bits (84), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 873 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 925
D S++++N++ + + K GH+K + +AFS +VS G D+ L VW+ G
Sbjct: 88 DHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKG 140
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Query: 418 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC 477
V +SPD + +++++ G E L AH V+ + FS +++
Sbjct: 115 VAFSPDNRQIVSGGRDNALRVWNVKG--ECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSG 172
Query: 478 GDDKTIKVWDATNGAKQYIFEGHEAPVYSV 507
G D +KVWD G +GH V SV
Sbjct: 173 GWDNLVKVWDLATGRLVTDLKGHTNYVTSV 202
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 28/160 (17%), Positives = 61/160 (38%), Gaps = 14/160 (8%)
Query: 863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
D +I G D+ ++++++ + + LKGH+ +T + S ++ SS D +
Sbjct: 165 DAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARL-- 222
Query: 923 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 982
W+ K L P Q + F ++ E + IF+ + + +
Sbjct: 223 ---WDLTKGEALSEMAAGAPINQ----ICFSPNRYWMCAATEKGIRIFDLENKDIIVELA 275
Query: 983 PRESSAP-----ITHATFSCDSQLVYACFLDATVCVFSAA 1017
P + +S D +Y+ + D + V+ +
Sbjct: 276 PEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGVS 315
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 27/149 (18%)
Query: 498 EGHEAPVYSVC--PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA 555
+ H+ ++SV + KEN + + + +LD +K W + + R+D + +S
Sbjct: 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRD--ERLD----------LQWSL 76
Query: 556 DGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD--DFSIKFWDMDSVQLLTSIDADGGLPAS 613
+G LGVV D + +AA D I+ WD+++ + + SIDA G +
Sbjct: 77 EG---------HQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDA--GPVDA 125
Query: 614 PRIRFNKDGCLLAVSTNDNGIKILATSDG 642
+ F+ D LA T+ + I G
Sbjct: 126 WTLAFSPDSQYLATGTHVGKVNIFGVESG 154
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 37.4 bits (85), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 23/139 (16%)
Query: 456 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 515
H G V ++ + P+ +L ++ D + K+WD G + F GHE+ + ++C N
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN- 239
Query: 516 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 575
F+T D L+D R D E M YS D + V F
Sbjct: 240 --AFATGSD-DATCRLFD---LRADQE-------LMTYSHDNIIC-------GITSVSFS 279
Query: 576 TTKNRFLAAGDDFSIKFWD 594
+ LA DDF+ WD
Sbjct: 280 KSGRLLLAGYDDFNCNVWD 298
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 27/213 (12%)
Query: 420 WSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 478
++P G+ +I IY+ + VR E+ H G ++ F N+ ++T
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSS 161
Query: 479 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 538
D T +WD G + F GH V S+ + + S A D K W R
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSL--SLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 539 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 598
+T+ G + + + F N F DD + + +D+ +
Sbjct: 220 --------------------QTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 599 QLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 631
Q L + D + + F+K G LL +D
Sbjct: 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%)
Query: 392 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 449
K+WD+ G C +N + + P+G+ F +++ E+
Sbjct: 209 KLWDVREGMCRQTFTG-----HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 450 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 509
+ D + G+ ++FS + L + DD VWDA + + GH+ V C
Sbjct: 264 YSH-DNIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRV--SCL 318
Query: 510 HHKENIQFIFSTALDGKIKAW 530
++ + + + D +K W
Sbjct: 319 GVTDDGMAVATGSWDSFLKIW 339
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 23/139 (16%)
Query: 456 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 515
H G V ++ + P+ +L ++ D + K+WD G + F GHE+ + ++C N
Sbjct: 194 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN- 250
Query: 516 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 575
F+T D L+D R D E M YS D + V F
Sbjct: 251 --AFATGSD-DATCRLFD---LRADQE-------LMTYSHDNIIC-------GITSVSFS 290
Query: 576 TTKNRFLAAGDDFSIKFWD 594
+ LA DDF+ WD
Sbjct: 291 KSGRLLLAGYDDFNCNVWD 309
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 27/213 (12%)
Query: 420 WSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 478
++P G+ +I IY+ + VR E+ H G ++ F N+ ++T
Sbjct: 116 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSS 172
Query: 479 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 538
D T +WD G + F GH V S+ + + S A D K W R
Sbjct: 173 GDTTCALWDIETGQQTTTFTGHTGDVMSL--SLAPDTRLFVSGACDASAKLWDVREGMCR 230
Query: 539 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 598
+T+ G + + + F N F DD + + +D+ +
Sbjct: 231 --------------------QTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRAD 269
Query: 599 QLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 631
Q L + D + + F+K G LL +D
Sbjct: 270 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 302
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%)
Query: 392 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 449
K+WD+ G C +N + + P+G+ F +++ E+
Sbjct: 220 KLWDVREGMCRQTFTG-----HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 274
Query: 450 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 509
+ D + G+ ++FS + L + DD VWDA + + GH+ V C
Sbjct: 275 YSH-DNIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRV--SCL 329
Query: 510 HHKENIQFIFSTALDGKIKAW 530
++ + + + D +K W
Sbjct: 330 GVTDDGMAVATGSWDSFLKIW 350
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 23/139 (16%)
Query: 456 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 515
H G V ++ + P+ +L ++ D + K+WD G + F GHE+ + ++C N
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN- 239
Query: 516 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 575
F+T D L+D R D E M YS D + V F
Sbjct: 240 --AFATGSD-DATCRLFD---LRADQE-------LMTYSHDNIIC-------GITSVSFS 279
Query: 576 TTKNRFLAAGDDFSIKFWD 594
+ LA DDF+ WD
Sbjct: 280 KSGRLLLAGYDDFNCNVWD 298
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 27/213 (12%)
Query: 420 WSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 478
++P G+ +I IY+ + VR E+ H G ++ F N+ ++T
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSS 161
Query: 479 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 538
D T +WD G + F GH V S+ + + S A D K W R
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSL--SLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 539 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 598
+T+ G + + + F N F DD + + +D+ +
Sbjct: 220 --------------------QTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 599 QLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 631
Q L + D + + F+K G LL +D
Sbjct: 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%)
Query: 392 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 449
K+WD+ G C +N + + P+G+ F +++ E+
Sbjct: 209 KLWDVREGMCRQTFTG-----HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 450 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 509
+ D + G+ ++FS + L + DD VWDA + + GH+ V C
Sbjct: 264 YSH-DNIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRV--SCL 318
Query: 510 HHKENIQFIFSTALDGKIKAW 530
++ + + + D +K W
Sbjct: 319 GVTDDGMAVATGSWDSFLKIW 339
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 23/139 (16%)
Query: 456 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 515
H G V ++ + P+ +L ++ D + K+WD G + F GHE+ + ++C N
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN- 239
Query: 516 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 575
F+T D L+D R D E M YS D + V F
Sbjct: 240 --AFATGSD-DATCRLFD---LRADQE-------LMTYSHDNIIC-------GITSVSFS 279
Query: 576 TTKNRFLAAGDDFSIKFWD 594
+ LA DDF+ WD
Sbjct: 280 KSGRLLLAGYDDFNCNVWD 298
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 27/213 (12%)
Query: 420 WSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 478
++P G+ +I IY+ + VR E+ H G ++ F N+ ++T
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSS 161
Query: 479 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 538
D T +WD G + F GH V S+ + + S A D K W R
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSL--SLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 539 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 598
+T+ G + + + F N F DD + + +D+ +
Sbjct: 220 --------------------QTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 599 QLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 631
Q L + D + + F+K G LL +D
Sbjct: 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%)
Query: 392 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 449
K+WD+ G C +N + + P+G+ F +++ E+
Sbjct: 209 KLWDVREGMCRQTFTG-----HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 450 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 509
+ D + G+ ++FS + L + DD VWDA + + GH+ V C
Sbjct: 264 YSH-DNIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRV--SCL 318
Query: 510 HHKENIQFIFSTALDGKIKAW 530
++ + + + D +K W
Sbjct: 319 GVTDDGMAVATGSWDSFLKIW 339
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 41/205 (20%), Positives = 82/205 (40%), Gaps = 21/205 (10%)
Query: 389 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR 448
R ++W S ++ L + +V +V WSP G+ A I+ D+
Sbjct: 38 RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK-KNQDDFE 96
Query: 449 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 508
++ H V +A++ P+ L + TC DK++ VW+ + E E SV
Sbjct: 97 CVTTLEGHENEVKSVAWA-PSGNL-LATCSRDKSVWVWE--------VDEEDEYECVSVL 146
Query: 509 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 568
H ++++ + + + YD+ ++ E W T +G + +
Sbjct: 147 NSHTQDVKHVVWHPSQELLASASYDDT-VKLYREEEDDWVCCA--------TLEG-HEST 196
Query: 569 LGVVQFDTTKNRFLAAGDDFSIKFW 593
+ + FD + R + DD +++ W
Sbjct: 197 VWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 415 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 474
V V+W P L A V++Y D V ++ H V +AF ++L
Sbjct: 153 VKHVVWHPSQELLASASYDDTVKLYREEEDDWV-CCATLEGHESTVWSLAFDPSGQRL-- 209
Query: 475 ITCGDDKTIKVWDATNGAKQYI 496
+C DD+T+++W +QY+
Sbjct: 210 ASCSDDRTVRIW------RQYL 225
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 23/139 (16%)
Query: 456 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 515
H G V ++ + P+ +L ++ D + K+WD G + F GHE+ + ++C N
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN- 239
Query: 516 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 575
F+T D L+D R D E M YS D + V F
Sbjct: 240 --AFATGSD-DATCRLFD---LRADQE-------LMTYSHDNIIC-------GITSVSFS 279
Query: 576 TTKNRFLAAGDDFSIKFWD 594
+ LA DDF+ WD
Sbjct: 280 KSGRLLLAGYDDFNCNVWD 298
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 27/213 (12%)
Query: 420 WSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 478
++P G+ +I IY+ + VR E+ H G ++ F N+ ++T
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSS 161
Query: 479 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 538
D T +WD G + F GH V S+ + + S A D K W R
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSL--SLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 539 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 598
+T+ G + + + F N F DD + + +D+ +
Sbjct: 220 --------------------QTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 599 QLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 631
Q L + D + + F+K G LL +D
Sbjct: 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%)
Query: 392 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 449
K+WD+ G C +N + + P+G+ F +++ E+
Sbjct: 209 KLWDVREGMCRQTFTG-----HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 450 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 509
+ D + G+ ++FS + L + DD VWDA + + GH+ V C
Sbjct: 264 YSH-DNIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRV--SCL 318
Query: 510 HHKENIQFIFSTALDGKIKAW 530
++ + + + D +K W
Sbjct: 319 GVTDDGMAVATGSWDSFLKIW 339
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 36/165 (21%)
Query: 480 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 539
DKT+++WD G F GH++ V SV K ++ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW--------- 134
Query: 540 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 599
G+ T+ D + R + + D ++AG+D +K W+++ Q
Sbjct: 135 --TIKGQCLATLLGHNDWVS-----QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 600 LLTSIDAD--------GGLPASPRIRFNKDGCLLAVSTNDNGIKI 636
I+AD L ASP DG L+A + D I +
Sbjct: 188 ----IEADFIGHNSNINTLTASP------DGTLIASAGKDGEIML 222
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 8/143 (5%)
Query: 457 VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHEAPV--YSVCPHHK- 512
VG +D+ +K+ +I G DKTIKVW G GH V V P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 513 -ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 571
++ I S D +KAW + D+ T+ S DGT + + +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 572 VQFDTTKNRF-LAAGDD-FSIKF 592
K + L+A D+ FS+ F
Sbjct: 223 WNLAAKKAMYTLSAQDEVFSLAF 245
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 36/165 (21%)
Query: 480 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 539
DKT+++WD G F GH++ V SV K ++ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW--------- 134
Query: 540 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 599
G+ T+ D + R + + D ++AG+D +K W+++ Q
Sbjct: 135 --TIKGQCLATLLGHNDWVS-----QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 600 LLTSIDAD--------GGLPASPRIRFNKDGCLLAVSTNDNGIKI 636
I+AD L ASP DG L+A + D I +
Sbjct: 188 ----IEADFIGHNSNINTLTASP------DGTLIASAGKDGEIML 222
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 8/143 (5%)
Query: 457 VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHEAPV--YSVCPHHK- 512
VG +D+ +K+ +I G DKTIKVW G GH V V P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 513 -ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 571
++ I S D +KAW + D+ T+ S DGT + + +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 572 VQFDTTKNRF-LAAGDD-FSIKF 592
K + L+A D+ FS+ F
Sbjct: 223 WNLAAKKAMYTLSAQDEVFSLAF 245
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 36/165 (21%)
Query: 480 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 539
DKT+++WD G F GH++ V SV K ++ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW--------- 134
Query: 540 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 599
G+ T+ D + R + + D ++AG+D +K W+++ Q
Sbjct: 135 --TIKGQCLATLLGHNDWVS-----QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 600 LLTSIDAD--------GGLPASPRIRFNKDGCLLAVSTNDNGIKI 636
I+AD L ASP DG L+A + D I +
Sbjct: 188 ----IEADFIGHNSNINTLTASP------DGTLIASAGKDGEIML 222
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 8/143 (5%)
Query: 457 VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHEAPV--YSVCPHHK- 512
VG +D+ +K+ +I G DKTIKVW G GH V V P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 513 -ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 571
++ I S D +KAW + D+ T+ S DGT + + +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 572 VQFDTTKNRF-LAAGDD-FSIKF 592
K + L+A D+ FS+ F
Sbjct: 223 WNLAAKKAMYTLSAQDEVFSLAF 245
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 36/165 (21%)
Query: 480 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 539
DKT+++WD G F GH++ V SV K ++ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW--------- 134
Query: 540 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 599
G+ T+ D + R + + D ++AG+D +K W+++ Q
Sbjct: 135 --TIKGQCLATLLGHNDWVS-----QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 600 LLTSIDAD--------GGLPASPRIRFNKDGCLLAVSTNDNGIKI 636
I+AD L ASP DG L+A + D I +
Sbjct: 188 ----IEADFIGHNSNINTLTASP------DGTLIASAGKDGEIML 222
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 8/143 (5%)
Query: 457 VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHEAPV--YSVCPHHK- 512
VG +D+ +K+ +I G DKTIKVW G GH V V P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 513 -ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 571
++ I S D +KAW + D+ T+ S DGT + + +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 572 VQFDTTKNRF-LAAGDD-FSIKF 592
K + L+A D+ FS+ F
Sbjct: 223 WNLAAKKAMYTLSAQDEVFSLAF 245
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 36/165 (21%)
Query: 480 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 539
DKT+++WD G F GH++ V SV K ++ I S + D IK W
Sbjct: 80 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW--------- 128
Query: 540 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 599
G+ T+ D + R + + D ++AG+D +K W+++ Q
Sbjct: 129 --TIKGQCLATLLGHNDWVS-----QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 181
Query: 600 LLTSIDAD--------GGLPASPRIRFNKDGCLLAVSTNDNGIKI 636
I+AD L ASP DG L+A + D I +
Sbjct: 182 ----IEADFIGHNSNINTLTASP------DGTLIASAGKDGEIML 216
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 8/143 (5%)
Query: 457 VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHEAPV--YSVCPHHK- 512
VG +D+ +K+ +I G DKTIKVW G GH V V P+ K
Sbjct: 98 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 156
Query: 513 -ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 571
++ I S D +KAW + D+ T+ S DGT + + +
Sbjct: 157 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 216
Query: 572 VQFDTTKNRF-LAAGDD-FSIKF 592
K + L+A D+ FS+ F
Sbjct: 217 WNLAAKKAMYTLSAQDEVFSLAF 239
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 420 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 479
W+ D + + + H V IY G V+ H E+ H G V I ++ + + ++TCG
Sbjct: 16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGIDWAPDSNR--IVTCGT 72
Query: 480 DKTIKVW 486
D+ VW
Sbjct: 73 DRNAYVW 79
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 862 QDNNIIAIGMDDSSIQIYN------VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD 915
+D IAI ++ + IY V+V E LK H+ ++TG+ ++ N +V+ G D
Sbjct: 18 KDRTQIAICPNNHEVHIYEKSGNKWVQVHE----LKEHNGQVTGIDWAPDSNRIVTCGTD 73
Query: 916 SQLCVWSSDG 925
VW+ G
Sbjct: 74 RNAYVWTLKG 83
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 66/165 (40%), Gaps = 36/165 (21%)
Query: 480 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 539
DKT+++WD G F GH++ V SV K + I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASX--IISGSRDKTIKVWTI------- 136
Query: 540 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 599
G+ T+ D + R + + D ++AG+D +K W+++ Q
Sbjct: 137 ----KGQCLATLLGHNDWVS-----QVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQ 187
Query: 600 LLTSIDAD--------GGLPASPRIRFNKDGCLLAVSTNDNGIKI 636
I+AD L ASP DG L+A + D I +
Sbjct: 188 ----IEADFIGHNSNINTLTASP------DGTLIASAGKDGEIXL 222
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 57/143 (39%), Gaps = 8/143 (5%)
Query: 457 VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHEAPV--YSVCPHHK- 512
VG +D+ +K+ I G DKTIKVW G GH V V P+ K
Sbjct: 104 VGHKSDVXSVDIDKKASXIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 513 -ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 571
++ I S D +KAW + D+ T+ S DGT + + +
Sbjct: 163 DDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXL 222
Query: 572 VQFDTTKNRF-LAAGDD-FSIKF 592
K + L+A D+ FS+ F
Sbjct: 223 WNLAAKKAXYTLSAQDEVFSLAF 245
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 420 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 479
W+ D + + + H V IY G V+ H E+ H G V + ++ + + ++TCG
Sbjct: 16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGVDWAPDSNR--IVTCGT 72
Query: 480 DKTIKVW 486
D+ VW
Sbjct: 73 DRNAYVW 79
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 862 QDNNIIAIGMDDSSIQIYN------VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD 915
+D IAI ++ + IY V+V E LK H+ ++TG+ ++ N +V+ G D
Sbjct: 18 KDRTQIAICPNNHEVHIYEKSGNKWVQVHE----LKEHNGQVTGVDWAPDSNRIVTCGTD 73
Query: 916 SQLCVWSSDG 925
VW+ G
Sbjct: 74 RNAYVWTLKG 83
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 10/117 (8%)
Query: 393 VWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH 450
VWD+ G C +QA + VN V + P G F ++Y EV +
Sbjct: 224 VWDMRSGQC---VQAFETHES--DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIY 278
Query: 451 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 507
+ ++ + G + + FS + L +D TI VWD G++ I GHE V ++
Sbjct: 279 SK-ESIIFGASSVDFSLSGRLL--FAGYNDYTINVWDVLKGSRVSILFGHENRVSTL 332
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 64/184 (34%), Gaps = 25/184 (13%)
Query: 464 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL 523
A S N + ++T D T +WD +G F GH A V + E S
Sbjct: 159 ACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGC 218
Query: 524 DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV--VQFDTTKNRF 581
D K W D + + Q F V V++ + + F
Sbjct: 219 DKKAMVW---------DMRSG--------------QCVQAFETHESDVNSVRYYPSGDAF 255
Query: 582 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 641
+ DD + + +D+ + + + + + + + F+ G LL ND I +
Sbjct: 256 ASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLK 315
Query: 642 GIRL 645
G R+
Sbjct: 316 GSRV 319
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 452 EID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 510
EID AHV + + F + L I+ D +K+W +G+ GH A V +
Sbjct: 130 EIDQAHVSEITKLKFFPSGEAL--ISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 187
Query: 511 HKENIQFIFSTALDGKIKAW 530
+ + + S +LDG I+ W
Sbjct: 188 DRG--RNVLSASLDGTIRLW 205
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 452 EID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 510
EID AHV + + F + L I+ D +K+W +G+ GH A V +
Sbjct: 133 EIDQAHVSEITKLKFFPSGEAL--ISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190
Query: 511 HKENIQFIFSTALDGKIKAW 530
+ + + S +LDG I+ W
Sbjct: 191 DRG--RNVLSASLDGTIRLW 208
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 455 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKEN 514
AH G VN + F+ L +T G D +++W+++NG + G VC + K+
Sbjct: 243 AHNGKVNGLCFTSDGLHL--LTVGTDNRMRLWNSSNGENTLVNYG------KVCNNSKKG 294
Query: 515 IQFIFSTA 522
++F S
Sbjct: 295 LKFTVSCG 302
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 33.9 bits (76), Expect = 0.52, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 579 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASPRI----RFNKDGCLLAVSTND 631
N+ A G F I WDM D ++LL +I ADG + A P + R K+ + A
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGA 106
Query: 632 NG 633
+G
Sbjct: 107 SG 108
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 33.9 bits (76), Expect = 0.57, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 579 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 614
N+ A G F I WDM D ++LL +I ADG + A P
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALP 85
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 33.9 bits (76), Expect = 0.57, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 579 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 614
N+ A G F I WDM D ++LL +I ADG + A P
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALP 85
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 33.9 bits (76), Expect = 0.57, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 579 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 614
N+ A G F I WDM D ++LL +I ADG + A P
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALP 85
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
+ II++ +D ++ Y + DEV + GH+K IT L +N L+S D ++ WS
Sbjct: 309 NGRIISLSLD-GTLNFYELGHDEVLKTISGHNKGITAL----TVNPLISGSYDGRIMEWS 363
Query: 923 S 923
S
Sbjct: 364 S 364
Score = 30.0 bits (66), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 24/176 (13%)
Query: 460 VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY-SVCPHHKENIQFI 518
V D+ FS P+ VIT G D+ I +D +G E + PV + + Q
Sbjct: 209 VRDVEFS-PDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKF 267
Query: 519 FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 578
+ D I+ W TT T Q + +GVV T
Sbjct: 268 ATVGADATIRVWD----------------VTTSKCVQKWTLDKQQLGNQQVGVVA--TGN 309
Query: 579 NRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTN 630
R ++ D ++ F+++ ++L +I L +P I + DG ++ S++
Sbjct: 310 GRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSS 365
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 33.5 bits (75), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 860 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS-HALNVLVSSGADSQL 918
HP+ ++ A G + ++ + N++ + HS+ ITGLA+S H+ L S D +
Sbjct: 235 HPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTV 294
Query: 919 CVWSSD 924
V +D
Sbjct: 295 AVLDAD 300
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 21/123 (17%)
Query: 365 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 424
L+ G+ D+ WEV + + + + + V D V WS DG
Sbjct: 56 FLIAGSWANDVRCWEVQDSGQTIPK----------AQQMHTGPVLD-------VCWSDDG 98
Query: 425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 484
S A +++ Q ++I H V I + CV+T DKT+K
Sbjct: 99 SKVFTASCDKTAKMWDL----SSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLK 154
Query: 485 VWD 487
WD
Sbjct: 155 FWD 157
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 860 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS-HALNVLVSSGADSQL 918
HPQ + + G ++ ++ + + + HS+ +TGL FS H++ L S D L
Sbjct: 223 HPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSL 282
Query: 919 CV 920
V
Sbjct: 283 AV 284
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 453 IDAHVGGVNDIAFSHPNKQLCV--------ITCGDDKTIKVWDATNGAKQYIFEGHEAPV 504
+D H G V H + C+ ++CG+D+T+++W NG+ + + +
Sbjct: 210 VDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISI 269
Query: 505 YSV 507
+SV
Sbjct: 270 WSV 272
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 21/124 (16%)
Query: 389 RNFKVWDLGACSMPLQA--ALVKDPGV---SVNRVIWSPDGSLFGVAYSRHIVQIYSYHG 443
+ KVW G+ LQA A V D V S N+ + + + + +++ +S
Sbjct: 124 KTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIH 183
Query: 444 GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 503
D VR H+ V+D F I+C +D IK+ D G +EGHE+
Sbjct: 184 NDVVR-------HLAVVDDGHF---------ISCSNDGLIKLVDXHTGDVLRTYEGHESF 227
Query: 504 VYSV 507
VY +
Sbjct: 228 VYCI 231
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 579 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 614
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|2XQW|C Chain C, Structure Of Factor H Domains 19-20 In Complex With
Complement C3d
Length = 133
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1071 ESEGKWGVPPPVDNGSTSSMP 1091
+S GK G PPP+DNG +S P
Sbjct: 6 DSTGKCGPPPPIDNGGITSFP 26
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 579 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 614
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 579 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 614
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 579 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 614
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|3KZJ|A Chain A, Structure Of Complement Factor H Variant R1203a
Length = 133
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1071 ESEGKWGVPPPVDNGSTSSMP 1091
+S GK G PPP+DNG +S P
Sbjct: 6 DSTGKCGPPPPIDNGDITSFP 26
>pdb|3KXV|A Chain A, Structure Of Complement Factor H Variant Q1139a
Length = 133
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1071 ESEGKWGVPPPVDNGSTSSMP 1091
+S GK G PPP+DNG +S P
Sbjct: 6 DSTGKCGPPPPIDNGDITSFP 26
>pdb|3SW0|X Chain X, Structure Of The C-terminal Region (modules 18-20) Of
Complement Regulator Factor H
Length = 188
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1071 ESEGKWGVPPPVDNGSTSSMP 1091
+S GK G PPP+DNG +S P
Sbjct: 61 DSTGKCGPPPPIDNGDITSFP 81
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 579 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 614
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISAWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 579 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASPRI----RFNKDGCLLAVSTND 631
N+ A G F I W+M D ++LL +I ADG + A P + R K+ + A
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGA 102
Query: 632 NG 633
+G
Sbjct: 103 SG 104
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 579 NRFLAAGDDFSIKFW---DMDSVQLLTSIDADGGLPASPRI----RFNKDGCLLAVSTND 631
N+ A G F I W +MD ++LL +I ADG + A P + R K+ + A
Sbjct: 43 NKLQAGGYGFVISDWMMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGA 102
Query: 632 NG 633
+G
Sbjct: 103 SG 104
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 579 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 614
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 579 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 614
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 579 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 614
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 579 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 614
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 579 NRFLAAGDDFSIKFW---DMDSVQLLTSIDADGGLPASP 614
N+ A G F I W +MD ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWRMPNMDGLELLKTIRADGAMSALP 82
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 579 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 614
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 579 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 614
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 579 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 614
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 40 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 78
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 579 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 614
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 45 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 83
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 579 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 614
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 579 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 614
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 579 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 614
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 579 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 614
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 45 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 83
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 579 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 614
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 579 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 614
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 579 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 614
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 579 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 614
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 579 NRFLAAGDDFSIKFW---DMDSVQLLTSIDADGGLPASP 614
N+ A G F I W +MD ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWRMPNMDGLELLKTIRADGAMSALP 81
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 579 NRFLAAGDDFSIKFW---DMDSVQLLTSIDADGGLPASP 614
N+ A G F I W +MD ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWKMPNMDGLELLKTIRADGAMSALP 81
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 579 NRFLAAGDDFSIKFW---DMDSVQLLTSIDADGGLPASP 614
N+ A G F I W +MD ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWMMPNMDGLELLKTIRADGAMSALP 81
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 579 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 614
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 40 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 78
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 579 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 614
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 579 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 614
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 579 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 614
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 42 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 80
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 579 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 614
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 579 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 614
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 32.0 bits (71), Expect = 2.2, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 579 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 614
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 867 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 921
+A+GM+ S++++ +V + K +L H + L F++ VS+G D+ L W
Sbjct: 239 LAVGMESSNVEVLHVNKPD-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 292
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 866 IIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 923
I++ G I ++VRV E + L GHS+ + GL ++ L S G D+ + VW S
Sbjct: 212 ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 270
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 862 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS 916
++ N +A+G + +Q+++V+ + + HS R+ L+++ + ++SSG+ S
Sbjct: 168 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRS 219
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 866 IIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 923
I++ G I ++VRV E + L GHS+ + GL ++ L S G D+ + VW S
Sbjct: 201 ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 259
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 862 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS 916
++ N +A+G + +Q+++V+ + + HS R+ L+++ + ++SSG+ S
Sbjct: 157 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRS 208
>pdb|3RJ3|D Chain D, Complement Components Factor H Ccp19-20 (S1191l Mutant) And
C3d In Complex
pdb|3RJ3|E Chain E, Complement Components Factor H Ccp19-20 (S1191l Mutant) And
C3d In Complex
pdb|3RJ3|F Chain F, Complement Components Factor H Ccp19-20 (S1191l Mutant) And
C3d In Complex
Length = 129
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 1074 GKWGVPPPVDNGSTSSMP 1091
GK G PPP+DNG +S P
Sbjct: 5 GKCGPPPPIDNGDITSFP 22
>pdb|3R62|A Chain A, Structure Of Complement Regulator Factor H Mutant, T1184r.
pdb|3R62|B Chain B, Structure Of Complement Regulator Factor H Mutant, T1184r
Length = 129
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 1074 GKWGVPPPVDNGSTSSMP 1091
GK G PPP+DNG +S P
Sbjct: 5 GKCGPPPPIDNGDITSFP 22
>pdb|2BZM|A Chain A, Solution Structure Of The Primary Host Recognition Region Of
Complement Factor H
pdb|3OXU|D Chain D, Complement Components Factor H Ccp19-20 And C3d In Complex
pdb|3OXU|E Chain E, Complement Components Factor H Ccp19-20 And C3d In Complex
pdb|3OXU|F Chain F, Complement Components Factor H Ccp19-20 And C3d In Complex
Length = 129
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 1074 GKWGVPPPVDNGSTSSMP 1091
GK G PPP+DNG +S P
Sbjct: 5 GKCGPPPPIDNGDITSFP 22
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 866 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 921
II++ +D ++ Y + DEV + GH+K IT L +N L+S D ++ W
Sbjct: 312 IISLSLD-GTLNFYELGHDEVLKTISGHNKGITAL----TVNPLISGSYDGRIXEW 362
>pdb|2G7I|A Chain A, Structure Of Human Complement Factor H Carboxyl Terminal
Domains 19- 20: A Basis For Atypical Hemolytic Uremic
Syndrome
Length = 125
Score = 30.8 bits (68), Expect = 4.5, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 1074 GKWGVPPPVDNGSTSSMP 1091
GK G PPP+DNG +S P
Sbjct: 1 GKCGPPPPIDNGDITSFP 18
>pdb|2QFH|A Chain A, Solution Structure Of The C-Terminal Scr-1620 FRAGMENT OF
Complement Factor H
Length = 333
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1071 ESEGKWGVPPPVDNGSTSSMP 1091
+S GK G PPP+DNG +S P
Sbjct: 183 DSTGKCGPPPPIDNGDITSFP 203
>pdb|1HAQ|A Chain A, Four Models Of Human Factor H Determined By Solution
Scattering Curve-Fitting And Homology Modelling
Length = 1213
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1071 ESEGKWGVPPPVDNGSTSSMP 1091
+S GK G PPP+DNG +S P
Sbjct: 1086 DSTGKCGPPPPIDNGDITSFP 1106
>pdb|3GAU|A Chain A, Solution Structure Of Human Complement Factor H In 50 Mm
Nacl Buffer
pdb|3GAV|A Chain A, Solution Structure Of Human Complement Factor H In 137 Mm
Nacl Buffer
pdb|3GAW|A Chain A, Solution Structure Of Human Complement Factor H In 250 Mm
Nacl Buffer
Length = 1213
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1071 ESEGKWGVPPPVDNGSTSSMP 1091
+S GK G PPP+DNG +S P
Sbjct: 1086 DSTGKCGPPPPIDNGDITSFP 1106
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 863 DNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 921
++ I++ G I ++VRV E + L GHS+ + GL ++ L S G D+ + VW
Sbjct: 118 NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
Query: 922 SS 923
S
Sbjct: 178 PS 179
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 862 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS 916
++ N +A+G + +Q+++V+ + + HS R+ L+++ + ++SSG+ S
Sbjct: 77 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRS 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,925,146
Number of Sequences: 62578
Number of extensions: 1384757
Number of successful extensions: 3723
Number of sequences better than 100.0: 144
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 3008
Number of HSP's gapped (non-prelim): 608
length of query: 1106
length of database: 14,973,337
effective HSP length: 109
effective length of query: 997
effective length of database: 8,152,335
effective search space: 8127877995
effective search space used: 8127877995
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)