Query 001295
Match_columns 1106
No_of_seqs 845 out of 4316
Neff 10.6
Searched_HMMs 46136
Date Thu Mar 28 21:03:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001295.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001295hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 2.3E-66 4.9E-71 513.1 35.0 492 5-883 17-514 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 6.9E-62 1.5E-66 465.5 28.2 451 5-642 7-469 (508)
3 KOG0319 WD40-repeat-containing 100.0 2.6E-57 5.7E-62 482.4 46.2 574 356-1073 25-622 (775)
4 KOG0319 WD40-repeat-containing 100.0 4.9E-56 1.1E-60 472.7 43.5 563 332-1018 41-620 (775)
5 KOG0291 WD40-repeat-containing 100.0 2E-51 4.3E-56 437.3 61.2 571 346-1072 51-711 (893)
6 KOG0318 WD40 repeat stress pro 100.0 8.4E-51 1.8E-55 415.6 58.0 576 354-1070 22-602 (603)
7 KOG0271 Notchless-like WD40 re 100.0 2.4E-54 5.3E-59 423.8 26.7 377 331-922 96-479 (480)
8 KOG0318 WD40 repeat stress pro 100.0 2E-48 4.3E-53 398.3 57.0 540 343-1017 52-602 (603)
9 KOG0306 WD40-repeat-containing 100.0 8.2E-49 1.8E-53 417.2 50.6 613 350-1071 21-665 (888)
10 KOG0291 WD40-repeat-containing 100.0 7.8E-47 1.7E-51 402.3 59.1 540 354-1073 18-615 (893)
11 KOG0306 WD40-repeat-containing 100.0 3E-48 6.4E-53 412.9 48.1 510 349-1018 64-665 (888)
12 KOG0271 Notchless-like WD40 re 100.0 1.3E-50 2.9E-55 397.5 26.4 364 407-1015 110-479 (480)
13 KOG1408 WD40 repeat protein [F 100.0 2.3E-46 5E-51 394.6 40.7 637 352-1102 39-750 (1080)
14 KOG1408 WD40 repeat protein [F 100.0 1.5E-41 3.3E-46 358.3 39.7 557 344-1018 71-714 (1080)
15 KOG0273 Beta-transducin family 100.0 5.6E-41 1.2E-45 339.5 33.7 352 338-924 166-523 (524)
16 KOG1539 WD repeat protein [Gen 100.0 6E-38 1.3E-42 339.0 56.1 588 356-1073 39-651 (910)
17 KOG0272 U4/U6 small nuclear ri 100.0 1.4E-41 3E-46 339.5 21.8 285 455-922 173-458 (459)
18 KOG0263 Transcription initiati 100.0 7E-41 1.5E-45 362.2 28.7 276 336-642 363-651 (707)
19 KOG0272 U4/U6 small nuclear ri 100.0 1E-40 2.2E-45 333.3 24.0 284 347-771 172-458 (459)
20 KOG1063 RNA polymerase II elon 100.0 3.9E-37 8.6E-42 326.0 46.7 597 333-1070 36-763 (764)
21 KOG0286 G-protein beta subunit 100.0 1.9E-38 4.1E-43 301.9 31.9 296 340-771 44-343 (343)
22 KOG0276 Vesicle coat complex C 100.0 5E-37 1.1E-41 320.5 44.3 464 349-1015 12-488 (794)
23 KOG1539 WD repeat protein [Gen 100.0 1.9E-35 4.1E-40 319.7 50.1 556 337-1015 62-646 (910)
24 KOG0279 G protein beta subunit 100.0 5.8E-37 1.3E-41 290.2 31.9 260 343-648 7-269 (315)
25 KOG0286 G-protein beta subunit 100.0 2E-36 4.4E-41 288.1 32.3 286 407-880 50-343 (343)
26 KOG2106 Uncharacterized conser 100.0 6.3E-35 1.4E-39 297.5 44.0 509 342-1069 96-625 (626)
27 KOG0279 G protein beta subunit 100.0 3.6E-36 7.8E-41 284.9 31.7 296 740-1071 12-314 (315)
28 KOG1063 RNA polymerase II elon 100.0 4.8E-35 1E-39 310.2 43.4 547 355-1070 19-699 (764)
29 KOG0296 Angio-associated migra 100.0 1.1E-35 2.3E-40 292.1 34.9 339 407-924 59-398 (399)
30 KOG0276 Vesicle coat complex C 100.0 2.2E-34 4.7E-39 300.9 45.4 470 408-1070 9-490 (794)
31 KOG0292 Vesicle coat complex C 100.0 8E-34 1.7E-38 307.7 47.5 489 349-1015 8-516 (1202)
32 KOG0315 G-protein beta subunit 100.0 2.9E-35 6.4E-40 273.4 30.0 297 364-903 11-309 (311)
33 KOG0295 WD40 repeat-containing 100.0 6.6E-36 1.4E-40 293.2 24.5 271 343-649 101-372 (406)
34 KOG0284 Polyadenylation factor 100.0 1.1E-35 2.3E-40 295.9 21.0 343 279-773 28-380 (464)
35 KOG0296 Angio-associated migra 100.0 9.7E-34 2.1E-38 278.4 33.8 332 343-882 57-398 (399)
36 KOG0273 Beta-transducin family 100.0 6.2E-34 1.3E-38 288.6 31.2 279 742-1070 234-523 (524)
37 KOG0295 WD40 repeat-containing 100.0 1.7E-34 3.8E-39 283.3 24.7 301 452-923 103-405 (406)
38 KOG0285 Pleiotropic regulator 100.0 2.7E-34 5.8E-39 280.5 25.7 254 337-642 137-391 (460)
39 KOG0315 G-protein beta subunit 100.0 1.9E-33 4.1E-38 261.4 29.3 272 516-928 11-292 (311)
40 KOG0265 U5 snRNP-specific prot 100.0 1E-33 2.2E-38 271.1 28.0 294 407-880 42-336 (338)
41 KOG0292 Vesicle coat complex C 100.0 1.2E-31 2.6E-36 290.9 45.8 448 409-1026 6-488 (1202)
42 KOG0293 WD40 repeat-containing 100.0 4.3E-34 9.4E-39 284.2 24.1 291 407-925 219-514 (519)
43 KOG2048 WD40 repeat protein [G 100.0 2.3E-30 5E-35 274.9 51.9 503 412-1073 25-551 (691)
44 KOG0265 U5 snRNP-specific prot 100.0 2.7E-33 5.8E-38 268.2 26.2 256 339-642 36-298 (338)
45 KOG2048 WD40 repeat protein [G 100.0 1.2E-29 2.5E-34 269.5 54.5 499 349-1019 24-550 (691)
46 KOG0645 WD40 repeat protein [G 100.0 4.4E-32 9.4E-37 256.1 32.1 245 346-640 10-261 (312)
47 KOG0263 Transcription initiati 100.0 9.7E-34 2.1E-38 307.0 23.4 274 742-1073 377-652 (707)
48 KOG0285 Pleiotropic regulator 100.0 9.7E-33 2.1E-37 269.7 25.8 294 407-840 146-440 (460)
49 KOG2106 Uncharacterized conser 100.0 6.7E-31 1.5E-35 268.3 39.1 436 339-923 142-625 (626)
50 KOG0645 WD40 repeat protein [G 100.0 1.3E-31 2.8E-36 252.9 29.8 293 740-1070 11-311 (312)
51 KOG0316 Conserved WD40 repeat- 100.0 3.4E-32 7.5E-37 250.8 23.6 252 339-642 5-259 (307)
52 KOG0282 mRNA splicing factor [ 100.0 9.4E-33 2E-37 281.5 20.5 290 407-880 209-503 (503)
53 KOG0284 Polyadenylation factor 100.0 1.2E-32 2.5E-37 274.3 20.5 284 742-1072 95-382 (464)
54 KOG0266 WD40 repeat-containing 100.0 2.3E-31 5E-36 301.8 32.5 289 742-1070 158-454 (456)
55 KOG0281 Beta-TrCP (transducin 100.0 5E-33 1.1E-37 270.2 15.6 232 349-642 196-430 (499)
56 KOG0266 WD40 repeat-containing 100.0 4.1E-31 9E-36 299.8 33.1 257 349-652 158-420 (456)
57 KOG0281 Beta-TrCP (transducin 100.0 1.6E-32 3.4E-37 266.8 15.8 273 456-928 196-481 (499)
58 KOG1445 Tumor-specific antigen 100.0 9.2E-30 2E-34 266.0 35.5 623 342-1021 71-848 (1012)
59 KOG0282 mRNA splicing factor [ 100.0 6.4E-32 1.4E-36 275.5 18.8 266 338-650 201-471 (503)
60 KOG0316 Conserved WD40 repeat- 100.0 2.1E-30 4.6E-35 239.0 26.1 287 405-839 10-299 (307)
61 KOG0275 Conserved WD40 repeat- 100.0 6.4E-31 1.4E-35 253.0 18.6 292 741-1068 211-507 (508)
62 KOG0278 Serine/threonine kinas 100.0 7.5E-31 1.6E-35 244.0 18.3 287 407-927 9-300 (334)
63 cd00200 WD40 WD40 domain, foun 100.0 8.3E-29 1.8E-33 270.1 35.9 285 452-922 4-289 (289)
64 cd00200 WD40 WD40 domain, foun 100.0 1.1E-28 2.3E-33 269.3 35.2 245 348-642 7-251 (289)
65 KOG0643 Translation initiation 100.0 8.6E-30 1.9E-34 239.8 22.6 295 407-925 5-318 (327)
66 PLN00181 protein SPA1-RELATED; 100.0 1.7E-28 3.8E-33 301.3 40.8 252 347-642 480-740 (793)
67 PLN00181 protein SPA1-RELATED; 100.0 1.2E-28 2.6E-33 302.7 37.0 321 715-1069 457-792 (793)
68 KOG0641 WD40 repeat protein [G 100.0 6.8E-28 1.5E-32 220.6 30.3 276 341-642 23-305 (350)
69 KOG0313 Microtubule binding pr 100.0 8.8E-29 1.9E-33 244.7 24.9 316 340-881 95-417 (423)
70 KOG0278 Serine/threonine kinas 100.0 1.7E-29 3.8E-34 235.0 17.7 298 740-1086 11-315 (334)
71 KOG1407 WD40 repeat protein [F 100.0 2.3E-27 4.9E-32 222.9 26.4 276 452-915 15-293 (313)
72 KOG0310 Conserved WD40 repeat- 100.0 2.7E-27 5.8E-32 242.5 28.1 286 742-1073 25-312 (487)
73 KOG0313 Microtubule binding pr 100.0 1.6E-27 3.5E-32 235.8 25.4 311 455-925 103-419 (423)
74 KOG0288 WD40 repeat protein Ti 100.0 1.2E-28 2.6E-33 246.4 17.2 260 333-642 157-419 (459)
75 KOG0640 mRNA cleavage stimulat 100.0 1.4E-27 3E-32 229.2 23.0 312 340-772 102-425 (430)
76 KOG0277 Peroxisomal targeting 100.0 2E-27 4.3E-32 222.3 22.2 287 354-723 12-308 (311)
77 KOG0310 Conserved WD40 repeat- 100.0 3.6E-27 7.8E-32 241.6 26.1 246 348-642 24-270 (487)
78 KOG1445 Tumor-specific antigen 100.0 8.1E-26 1.7E-30 236.7 36.6 511 493-1083 71-857 (1012)
79 KOG0299 U3 snoRNP-associated p 100.0 4.5E-27 9.7E-32 238.8 25.8 269 345-646 137-416 (479)
80 KOG0643 Translation initiation 100.0 2.2E-26 4.9E-31 216.9 28.6 235 345-630 5-251 (327)
81 KOG0283 WD40 repeat-containing 100.0 1.7E-27 3.7E-32 261.4 24.0 272 348-642 265-578 (712)
82 KOG0973 Histone transcription 100.0 4.3E-27 9.3E-32 264.8 26.5 304 742-1073 12-358 (942)
83 KOG1446 Histone H3 (Lys4) meth 100.0 1.6E-25 3.5E-30 217.9 33.1 288 407-882 9-303 (311)
84 KOG0283 WD40 repeat-containing 100.0 5.9E-27 1.3E-31 257.2 25.6 273 741-1019 265-578 (712)
85 KOG0274 Cdc4 and related F-box 100.0 2.4E-26 5.2E-31 258.0 30.1 244 348-650 206-450 (537)
86 KOG1407 WD40 repeat protein [F 100.0 4.1E-26 9E-31 214.5 26.1 247 346-642 16-263 (313)
87 KOG0277 Peroxisomal targeting 100.0 4.9E-27 1.1E-31 219.7 19.4 253 342-639 52-308 (311)
88 KOG0274 Cdc4 and related F-box 100.0 6.8E-26 1.5E-30 254.4 31.8 287 410-894 206-494 (537)
89 KOG2096 WD40 repeat protein [G 100.0 9.7E-26 2.1E-30 217.6 28.2 306 604-1015 82-400 (420)
90 KOG0308 Conserved WD40 repeat- 100.0 4.7E-27 1E-31 248.0 20.8 253 349-642 20-287 (735)
91 KOG0640 mRNA cleavage stimulat 100.0 1E-26 2.2E-31 223.2 21.2 245 742-1016 171-425 (430)
92 KOG0772 Uncharacterized conser 100.0 1.8E-26 4E-31 236.6 24.3 219 408-648 163-402 (641)
93 KOG0288 WD40 repeat protein Ti 99.9 1.7E-27 3.7E-32 238.1 15.8 286 407-879 170-458 (459)
94 KOG1446 Histone H3 (Lys4) meth 99.9 3.6E-25 7.7E-30 215.5 31.2 254 809-1081 13-273 (311)
95 PTZ00421 coronin; Provisional 99.9 2.1E-25 4.6E-30 250.9 33.5 264 744-1026 21-299 (493)
96 KOG0973 Histone transcription 99.9 6.5E-26 1.4E-30 255.4 28.0 309 349-776 12-358 (942)
97 KOG0639 Transducin-like enhanc 99.9 1.4E-25 3E-30 229.0 27.3 255 342-642 411-665 (705)
98 KOG0647 mRNA export protein (c 99.9 2E-25 4.3E-30 214.5 26.7 246 349-641 26-282 (347)
99 KOG0772 Uncharacterized conser 99.9 5.2E-26 1.1E-30 233.3 23.9 310 609-1026 166-500 (641)
100 KOG0300 WD40 repeat-containing 99.9 7.2E-26 1.6E-30 217.9 22.9 253 341-642 138-430 (481)
101 PTZ00421 coronin; Provisional 99.9 5E-25 1.1E-29 247.9 33.2 263 349-642 19-292 (493)
102 KOG0305 Anaphase promoting com 99.9 7E-26 1.5E-30 243.1 24.4 260 332-642 198-463 (484)
103 KOG0641 WD40 repeat protein [G 99.9 1.5E-24 3.3E-29 198.7 29.0 308 742-1070 31-349 (350)
104 KOG0294 WD40 repeat-containing 99.9 4.6E-25 9.9E-30 213.3 26.9 239 808-1072 41-283 (362)
105 KOG0268 Sof1-like rRNA process 99.9 1.3E-26 2.7E-31 227.8 14.4 243 345-642 61-304 (433)
106 KOG0301 Phospholipase A2-activ 99.9 2.4E-25 5.2E-30 237.2 24.7 241 343-640 6-249 (745)
107 KOG0264 Nucleosome remodeling 99.9 1.4E-25 3.1E-30 228.6 21.5 269 342-641 116-405 (422)
108 PTZ00420 coronin; Provisional 99.9 2.1E-24 4.6E-29 243.0 33.2 235 369-642 50-295 (568)
109 KOG0305 Anaphase promoting com 99.9 4.4E-25 9.5E-30 237.0 26.2 276 353-773 180-461 (484)
110 KOG0308 Conserved WD40 repeat- 99.9 6.9E-26 1.5E-30 239.3 19.1 374 410-1026 19-402 (735)
111 KOG0299 U3 snoRNP-associated p 99.9 4.1E-25 8.8E-30 224.7 24.0 292 407-829 137-444 (479)
112 KOG0647 mRNA export protein (c 99.9 9.9E-25 2.1E-29 209.8 25.1 206 408-642 23-230 (347)
113 KOG2096 WD40 repeat protein [G 99.9 2.4E-24 5.2E-29 208.0 27.4 313 407-880 81-400 (420)
114 KOG0268 Sof1-like rRNA process 99.9 1.3E-25 2.8E-30 220.8 17.8 285 408-842 62-348 (433)
115 KOG0289 mRNA splicing factor [ 99.9 2.9E-24 6.3E-29 216.3 27.3 280 611-1016 220-505 (506)
116 KOG0289 mRNA splicing factor [ 99.9 3.2E-24 7E-29 215.9 26.3 282 458-923 220-505 (506)
117 KOG0301 Phospholipase A2-activ 99.9 2E-24 4.4E-29 230.2 24.9 274 740-1070 11-288 (745)
118 KOG1963 WD40 repeat protein [G 99.9 1.6E-22 3.5E-27 223.0 40.5 516 416-1076 20-589 (792)
119 KOG0294 WD40 repeat-containing 99.9 3.1E-23 6.7E-28 200.7 29.3 269 427-884 4-283 (362)
120 PTZ00420 coronin; Provisional 99.9 1.5E-23 3.2E-28 236.2 31.6 241 345-622 69-318 (568)
121 KOG0300 WD40 repeat-containing 99.9 3.6E-24 7.8E-29 206.2 21.6 328 581-1019 127-478 (481)
122 KOG1332 Vesicle coat complex C 99.9 2.2E-24 4.7E-29 200.9 18.1 257 348-640 9-286 (299)
123 KOG1332 Vesicle coat complex C 99.9 7.3E-24 1.6E-28 197.4 18.0 222 407-640 6-241 (299)
124 KOG1036 Mitotic spindle checkp 99.9 2.8E-22 6.1E-27 194.1 28.2 240 349-642 12-264 (323)
125 KOG1274 WD40 repeat protein [G 99.9 1.6E-22 3.4E-27 223.0 29.2 251 741-1018 11-263 (933)
126 KOG0639 Transducin-like enhanc 99.9 3.7E-23 8E-28 211.4 21.5 282 742-1069 418-703 (705)
127 KOG0646 WD40 repeat protein [G 99.9 1.2E-22 2.6E-27 207.3 25.1 215 412-654 81-320 (476)
128 KOG1274 WD40 repeat protein [G 99.9 7.4E-20 1.6E-24 202.2 48.3 253 348-641 11-263 (933)
129 KOG4283 Transcription-coupled 99.9 3.4E-22 7.4E-27 191.1 26.2 238 347-644 40-280 (397)
130 KOG1963 WD40 repeat protein [G 99.9 2.5E-20 5.4E-25 205.9 44.5 511 354-1023 20-589 (792)
131 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.6E-21 9.9E-26 210.5 36.8 205 815-1026 77-288 (300)
132 KOG0646 WD40 repeat protein [G 99.9 1.5E-22 3.1E-27 206.7 22.5 296 476-906 12-331 (476)
133 KOG1036 Mitotic spindle checkp 99.9 1.3E-21 2.9E-26 189.5 27.7 284 409-872 10-294 (323)
134 KOG1273 WD40 repeat protein [G 99.9 6.2E-22 1.3E-26 191.3 24.1 295 415-883 26-323 (405)
135 KOG4283 Transcription-coupled 99.9 7E-22 1.5E-26 189.0 24.1 320 741-1088 41-378 (397)
136 KOG0321 WD40 repeat-containing 99.9 1.7E-22 3.7E-27 213.4 20.8 435 417-1018 54-532 (720)
137 KOG2055 WD40 repeat protein [G 99.9 1.3E-21 2.9E-26 199.0 26.2 249 742-1017 256-512 (514)
138 KOG1538 Uncharacterized conser 99.9 3.5E-21 7.6E-26 203.4 28.8 456 352-969 14-520 (1081)
139 KOG0650 WD40 repeat nucleolar 99.9 2E-21 4.4E-26 203.5 26.5 313 451-921 394-732 (733)
140 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.3E-20 5E-25 204.9 36.7 294 424-904 1-300 (300)
141 KOG0264 Nucleosome remodeling 99.9 2.4E-22 5.2E-27 205.2 18.8 234 342-597 169-405 (422)
142 KOG2055 WD40 repeat protein [G 99.9 2.3E-21 4.9E-26 197.4 25.0 292 457-882 213-512 (514)
143 KOG1538 Uncharacterized conser 99.9 7.1E-21 1.5E-25 201.1 29.1 458 414-1059 14-514 (1081)
144 KOG1273 WD40 repeat protein [G 99.9 1.4E-20 3.1E-25 181.9 27.3 275 338-641 12-323 (405)
145 KOG2445 Nuclear pore complex c 99.9 3.7E-20 8.1E-25 178.9 26.9 268 454-925 10-319 (361)
146 KOG0321 WD40 repeat-containing 99.9 5.8E-21 1.2E-25 202.0 23.0 291 755-1073 64-394 (720)
147 KOG0267 Microtubule severing p 99.9 2.3E-22 4.9E-27 215.4 10.3 232 809-1062 27-260 (825)
148 KOG0267 Microtubule severing p 99.9 2.5E-22 5.3E-27 215.1 10.3 233 349-631 27-259 (825)
149 KOG0269 WD40 repeat-containing 99.9 2.9E-21 6.2E-26 208.9 18.2 273 716-1018 60-341 (839)
150 KOG4328 WD40 protein [Function 99.9 1.9E-20 4E-25 190.7 22.3 259 349-648 185-457 (498)
151 KOG0302 Ribosome Assembly prot 99.9 2.5E-20 5.3E-25 185.0 22.1 270 339-637 140-435 (440)
152 KOG0269 WD40 repeat-containing 99.9 1.8E-21 3.9E-26 210.5 14.4 244 352-642 89-342 (839)
153 KOG0650 WD40 repeat nucleolar 99.9 6.8E-20 1.5E-24 192.2 25.4 322 560-1014 395-732 (733)
154 KOG2445 Nuclear pore complex c 99.9 1.4E-19 3E-24 175.0 24.9 259 348-640 11-318 (361)
155 KOG0270 WD40 repeat-containing 99.9 3.2E-20 6.9E-25 188.5 20.1 260 362-649 192-458 (463)
156 COG2319 FOG: WD40 repeat [Gene 99.8 2.2E-17 4.8E-22 192.5 45.8 371 345-925 60-443 (466)
157 KOG1034 Transcriptional repres 99.8 1.2E-19 2.5E-24 177.0 21.1 299 741-1070 36-383 (385)
158 KOG1009 Chromatin assembly com 99.8 4.2E-19 9.1E-24 178.4 25.0 171 349-533 12-195 (434)
159 KOG4328 WD40 protein [Function 99.8 4.8E-19 1E-23 180.5 23.4 317 487-882 172-495 (498)
160 KOG4378 Nuclear protein COP1 [ 99.8 2.7E-19 5.9E-24 183.3 21.6 216 748-999 84-305 (673)
161 COG2319 FOG: WD40 repeat [Gene 99.8 1.2E-16 2.6E-21 186.3 46.2 368 453-1018 61-443 (466)
162 KOG1034 Transcriptional repres 99.8 2.2E-19 4.8E-24 175.1 18.6 258 349-640 88-383 (385)
163 KOG0302 Ribosome Assembly prot 99.8 3.3E-19 7.2E-24 177.0 18.8 171 342-534 202-379 (440)
164 KOG4378 Nuclear protein COP1 [ 99.8 1.5E-18 3.3E-23 177.9 24.1 292 709-1049 5-303 (673)
165 KOG0270 WD40 repeat-containing 99.8 7.9E-19 1.7E-23 178.5 20.6 196 423-642 191-406 (463)
166 KOG1524 WD40 repeat-containing 99.8 2.1E-17 4.5E-22 171.3 30.9 503 348-1072 12-525 (737)
167 KOG1009 Chromatin assembly com 99.8 6.8E-18 1.5E-22 169.8 25.6 163 413-600 14-199 (434)
168 KOG0307 Vesicle coat complex C 99.8 1.5E-19 3.3E-24 205.2 15.3 259 346-642 60-329 (1049)
169 KOG0322 G-protein beta subunit 99.8 1.3E-18 2.7E-23 164.6 18.7 308 492-923 5-322 (323)
170 KOG2919 Guanine nucleotide-bin 99.8 1.3E-17 2.8E-22 162.4 25.9 227 753-1008 121-361 (406)
171 KOG1310 WD40 repeat protein [G 99.8 3.4E-18 7.3E-23 177.5 20.5 229 407-649 45-312 (758)
172 KOG4497 Uncharacterized conser 99.8 9.4E-17 2E-21 156.6 28.0 383 417-917 13-425 (447)
173 KOG2919 Guanine nucleotide-bin 99.8 1.3E-17 2.9E-22 162.3 21.8 275 459-916 51-362 (406)
174 KOG0303 Actin-binding protein 99.8 1.6E-17 3.5E-22 166.0 20.0 216 406-647 75-301 (472)
175 KOG1912 WD40 repeat protein [G 99.8 3.6E-16 7.8E-21 169.2 31.0 498 349-996 14-572 (1062)
176 KOG0303 Actin-binding protein 99.8 3.8E-17 8.2E-22 163.4 20.4 243 340-621 71-320 (472)
177 KOG0644 Uncharacterized conser 99.8 2E-18 4.3E-23 187.9 11.6 286 407-927 185-471 (1113)
178 KOG0649 WD40 repeat protein [G 99.8 8.3E-16 1.8E-20 143.8 27.1 288 745-1068 12-314 (325)
179 KOG1007 WD repeat protein TSSC 99.8 8.3E-17 1.8E-21 154.3 20.5 258 347-640 60-361 (370)
180 KOG0307 Vesicle coat complex C 99.8 1E-17 2.3E-22 190.5 16.9 278 713-1020 36-330 (1049)
181 KOG4497 Uncharacterized conser 99.7 1.9E-16 4.1E-21 154.5 21.8 344 571-1063 13-425 (447)
182 KOG1188 WD40 repeat protein [G 99.7 1.2E-16 2.6E-21 157.3 20.6 151 473-642 42-198 (376)
183 PRK11028 6-phosphogluconolacto 99.7 1.4E-15 3E-20 168.0 31.6 279 709-1021 5-310 (330)
184 KOG1188 WD40 repeat protein [G 99.7 7.9E-17 1.7E-21 158.6 18.7 198 365-605 42-251 (376)
185 KOG2110 Uncharacterized conser 99.7 1.2E-15 2.6E-20 152.1 27.3 241 810-1073 5-251 (391)
186 KOG4227 WD40 repeat protein [G 99.7 3.7E-16 8.1E-21 155.5 23.5 172 452-646 51-231 (609)
187 PRK11028 6-phosphogluconolacto 99.7 1.9E-15 4.2E-20 166.8 32.2 252 810-1077 34-311 (330)
188 KOG0642 Cell-cycle nuclear pro 99.7 2.1E-17 4.6E-22 173.4 15.3 229 407-642 289-563 (577)
189 KOG1912 WD40 repeat protein [G 99.7 1.9E-15 4.1E-20 163.7 30.6 607 333-1021 37-745 (1062)
190 KOG0644 Uncharacterized conser 99.7 6E-18 1.3E-22 184.2 9.5 244 342-644 182-430 (1113)
191 KOG4227 WD40 repeat protein [G 99.7 2E-16 4.4E-21 157.4 19.0 263 345-641 51-323 (609)
192 KOG1517 Guanine nucleotide bin 99.7 5.2E-16 1.1E-20 173.7 24.1 321 433-885 1049-1384(1387)
193 KOG0322 G-protein beta subunit 99.7 1.2E-16 2.7E-21 151.3 16.2 304 449-881 6-322 (323)
194 KOG1007 WD repeat protein TSSC 99.7 3.4E-16 7.4E-21 150.1 17.1 228 349-596 122-361 (370)
195 KOG1587 Cytoplasmic dynein int 99.7 1.3E-15 2.7E-20 170.0 24.3 262 343-642 235-518 (555)
196 KOG1334 WD40 repeat protein [G 99.7 1.8E-16 3.8E-21 163.2 15.6 322 452-885 137-469 (559)
197 KOG0649 WD40 repeat protein [G 99.7 2E-15 4.3E-20 141.3 21.0 254 351-640 11-274 (325)
198 KOG0642 Cell-cycle nuclear pro 99.7 2.5E-16 5.3E-21 165.5 16.8 277 452-895 289-574 (577)
199 KOG2110 Uncharacterized conser 99.7 2.3E-14 5.1E-19 143.1 28.9 261 809-1095 86-357 (391)
200 KOG1334 WD40 repeat protein [G 99.7 4.4E-16 9.5E-21 160.3 16.8 273 348-651 140-434 (559)
201 KOG1517 Guanine nucleotide bin 99.7 5.6E-15 1.2E-19 165.6 26.2 195 822-1020 1178-1384(1387)
202 KOG1587 Cytoplasmic dynein int 99.7 8.7E-15 1.9E-19 163.3 26.0 285 434-925 222-517 (555)
203 KOG0974 WD-repeat protein WDR6 99.7 4.8E-13 1E-17 151.5 39.3 152 355-535 138-290 (967)
204 KOG0771 Prolactin regulatory e 99.7 1.1E-15 2.4E-20 155.6 15.5 198 814-1018 148-355 (398)
205 KOG0290 Conserved WD40 repeat- 99.7 1.2E-14 2.5E-19 140.0 21.4 245 809-1067 95-362 (364)
206 KOG1523 Actin-related protein 99.7 4.5E-15 9.8E-20 145.1 17.7 209 412-643 10-239 (361)
207 KOG0290 Conserved WD40 repeat- 99.6 1.4E-14 3.1E-19 139.3 20.2 252 347-636 93-361 (364)
208 KOG1240 Protein kinase contain 99.6 5.7E-14 1.2E-18 160.5 28.4 213 408-642 1044-1275(1431)
209 KOG0771 Prolactin regulatory e 99.6 3.2E-15 6.9E-20 152.3 15.6 199 855-1071 148-355 (398)
210 KOG1524 WD40 repeat-containing 99.6 1.2E-14 2.7E-19 151.0 18.7 207 706-969 75-282 (737)
211 KOG1240 Protein kinase contain 99.6 9.3E-14 2E-18 158.7 27.4 269 343-643 1041-1337(1431)
212 PF02239 Cytochrom_D1: Cytochr 99.6 8.1E-13 1.8E-17 144.5 32.2 327 517-1026 8-356 (369)
213 KOG1310 WD40 repeat protein [G 99.6 5.7E-15 1.2E-19 153.9 14.4 238 346-604 46-311 (758)
214 COG4946 Uncharacterized protei 99.6 4.9E-11 1.1E-15 122.9 42.5 144 742-913 358-507 (668)
215 KOG0974 WD-repeat protein WDR6 99.6 3.9E-12 8.4E-17 144.3 37.7 198 351-597 88-289 (967)
216 KOG2111 Uncharacterized conser 99.6 3.2E-13 7E-18 132.4 23.7 242 811-1073 6-259 (346)
217 PRK01742 tolB translocation pr 99.6 1.8E-13 4E-18 155.6 25.3 224 372-653 183-415 (429)
218 PF02239 Cytochrom_D1: Cytochr 99.6 2E-12 4.3E-17 141.4 30.1 322 471-929 6-352 (369)
219 PRK01742 tolB translocation pr 99.6 2E-13 4.4E-18 155.2 22.7 220 345-621 198-426 (429)
220 KOG1523 Actin-related protein 99.6 6.1E-13 1.3E-17 130.4 21.1 242 809-1069 9-277 (361)
221 KOG2139 WD40 repeat protein [G 99.5 6.7E-12 1.5E-16 125.0 25.9 289 707-1016 111-430 (445)
222 KOG2139 WD40 repeat protein [G 99.5 1.6E-12 3.4E-17 129.4 21.2 256 349-633 97-368 (445)
223 KOG2041 WD40 repeat protein [G 99.5 1.6E-11 3.4E-16 132.4 29.9 548 349-1018 13-620 (1189)
224 KOG2321 WD40 repeat protein [G 99.5 1.2E-12 2.6E-17 137.9 21.0 260 342-642 43-304 (703)
225 KOG2394 WD40 protein DMR-N9 [G 99.5 4.3E-13 9.3E-18 140.2 15.7 154 350-510 219-383 (636)
226 KOG2394 WD40 protein DMR-N9 [G 99.5 1.2E-12 2.6E-17 136.8 18.9 217 704-927 183-455 (636)
227 KOG1272 WD40-repeat-containing 99.5 1.4E-13 3.1E-18 141.1 11.2 232 810-1070 129-362 (545)
228 PF04762 IKI3: IKI3 family; I 99.5 1.5E-08 3.3E-13 123.3 53.7 538 349-1022 74-689 (928)
229 KOG2315 Predicted translation 99.5 1.6E-10 3.4E-15 122.6 31.3 285 745-1073 75-393 (566)
230 KOG1409 Uncharacterized conser 99.4 7.4E-12 1.6E-16 124.0 19.5 325 575-1018 33-395 (404)
231 COG5354 Uncharacterized protei 99.4 1.2E-10 2.5E-15 121.8 29.1 362 408-916 28-421 (561)
232 PRK05137 tolB translocation pr 99.4 6E-11 1.3E-15 135.7 29.9 214 832-1073 183-415 (435)
233 KOG2111 Uncharacterized conser 99.4 3.8E-10 8.3E-15 111.1 30.3 238 352-642 7-258 (346)
234 KOG2321 WD40 repeat protein [G 99.4 2.7E-11 5.9E-16 127.9 23.1 292 455-883 49-344 (703)
235 PRK03629 tolB translocation pr 99.4 8.7E-11 1.9E-15 133.3 29.1 213 374-640 180-406 (429)
236 KOG1272 WD40-repeat-containing 99.4 8.3E-13 1.8E-17 135.6 10.9 260 572-962 135-397 (545)
237 PRK03629 tolB translocation pr 99.4 3.6E-11 7.8E-16 136.3 25.4 222 344-620 192-427 (429)
238 KOG2041 WD40 repeat protein [G 99.4 7.4E-10 1.6E-14 119.8 33.3 476 457-1026 14-541 (1189)
239 PF10282 Lactonase: Lactonase, 99.4 4E-10 8.7E-15 124.2 32.7 280 716-1024 13-331 (345)
240 COG2706 3-carboxymuconate cycl 99.4 1.4E-09 2.9E-14 110.2 32.9 282 715-1022 15-328 (346)
241 PRK05137 tolB translocation pr 99.4 1.1E-10 2.4E-15 133.5 29.1 216 373-642 182-414 (435)
242 KOG1354 Serine/threonine prote 99.4 4.4E-11 9.5E-16 118.4 21.3 364 457-970 25-431 (433)
243 COG4946 Uncharacterized protei 99.4 7.8E-09 1.7E-13 107.0 38.2 171 821-1006 331-507 (668)
244 KOG2315 Predicted translation 99.4 4.8E-10 1.1E-14 119.0 30.4 154 350-533 34-202 (566)
245 PRK04922 tolB translocation pr 99.4 4.3E-11 9.3E-16 136.6 24.6 222 343-620 196-432 (433)
246 PF04762 IKI3: IKI3 family; I 99.4 2.8E-07 6.1E-12 112.4 58.3 471 410-1070 73-639 (928)
247 KOG3881 Uncharacterized conser 99.4 6E-11 1.3E-15 119.9 21.8 255 348-642 53-322 (412)
248 PRK04922 tolB translocation pr 99.4 8.5E-11 1.8E-15 134.2 26.2 215 373-641 184-412 (433)
249 PF10282 Lactonase: Lactonase, 99.4 7.4E-10 1.6E-14 122.1 32.6 253 810-1077 36-329 (345)
250 PF08662 eIF2A: Eukaryotic tra 99.4 4.6E-11 1E-15 118.3 20.2 155 855-1026 9-187 (194)
251 PRK02889 tolB translocation pr 99.4 7.7E-11 1.7E-15 133.9 24.6 223 344-620 189-424 (427)
252 KOG2659 LisH motif-containing 99.4 5.3E-12 1.2E-16 120.5 12.1 163 5-169 26-199 (228)
253 KOG3881 Uncharacterized conser 99.4 8.2E-11 1.8E-15 119.0 20.9 115 814-929 206-325 (412)
254 KOG1354 Serine/threonine prote 99.3 1.3E-10 2.9E-15 115.1 20.8 276 348-643 23-362 (433)
255 PRK02889 tolB translocation pr 99.3 1.6E-10 3.5E-15 131.3 24.8 192 408-632 191-392 (427)
256 COG2706 3-carboxymuconate cycl 99.3 5.6E-09 1.2E-13 105.8 31.8 257 809-1081 38-332 (346)
257 TIGR02658 TTQ_MADH_Hv methylam 99.3 7.5E-09 1.6E-13 110.1 34.5 205 814-1026 108-339 (352)
258 KOG2314 Translation initiation 99.3 1.1E-09 2.3E-14 115.6 26.7 327 414-874 212-559 (698)
259 KOG1832 HIV-1 Vpr-binding prot 99.3 3.6E-12 7.8E-17 140.4 8.1 213 349-627 1100-1318(1516)
260 COG5354 Uncharacterized protei 99.3 2.7E-09 6E-14 111.8 28.6 337 571-1009 37-421 (561)
261 TIGR02800 propeller_TolB tol-p 99.3 1.2E-09 2.5E-14 125.6 28.9 205 831-1063 170-387 (417)
262 PF08662 eIF2A: Eukaryotic tra 99.3 2E-10 4.4E-15 113.7 19.1 111 809-925 58-180 (194)
263 TIGR02658 TTQ_MADH_Hv methylam 99.3 8.6E-09 1.9E-13 109.7 31.8 238 818-1073 53-333 (352)
264 KOG1409 Uncharacterized conser 99.2 2.7E-10 6E-15 113.1 17.1 204 407-642 19-229 (404)
265 KOG2314 Translation initiation 99.2 5.1E-09 1.1E-13 110.6 26.7 294 744-1072 250-575 (698)
266 PRK01029 tolB translocation pr 99.2 1.6E-09 3.5E-14 122.2 25.1 224 348-621 182-425 (428)
267 TIGR02800 propeller_TolB tol-p 99.2 4.2E-09 9E-14 121.1 28.1 191 408-632 185-386 (417)
268 PRK04792 tolB translocation pr 99.2 2E-09 4.3E-14 122.7 24.7 222 345-620 212-446 (448)
269 PRK00178 tolB translocation pr 99.2 3.2E-09 6.9E-14 121.9 26.0 225 342-620 190-427 (430)
270 KOG4547 WD40 repeat-containing 99.2 4.1E-09 8.9E-14 113.1 23.3 188 820-1018 3-221 (541)
271 KOG4547 WD40 repeat-containing 99.2 1.5E-09 3.2E-14 116.4 19.5 146 754-925 69-221 (541)
272 PRK00178 tolB translocation pr 99.1 1.9E-08 4E-13 115.6 28.0 199 408-640 194-406 (430)
273 TIGR03300 assembly_YfgL outer 99.1 2.5E-08 5.4E-13 112.5 28.3 304 473-921 67-376 (377)
274 KOG0280 Uncharacterized conser 99.1 1E-08 2.2E-13 100.1 20.3 274 716-1020 46-336 (339)
275 PRK01029 tolB translocation pr 99.1 2.9E-08 6.3E-13 112.1 27.5 203 409-642 181-405 (428)
276 PRK04792 tolB translocation pr 99.1 2.7E-08 5.9E-13 113.4 27.4 199 408-640 213-425 (448)
277 PLN02919 haloacid dehalogenase 99.1 9.1E-08 2E-12 119.2 31.3 256 814-1073 571-891 (1057)
278 TIGR03300 assembly_YfgL outer 99.0 2.5E-07 5.5E-12 104.3 31.2 234 362-642 65-299 (377)
279 KOG0280 Uncharacterized conser 99.0 2.5E-08 5.4E-13 97.4 19.3 192 349-557 68-265 (339)
280 KOG1064 RAVE (regulator of V-A 99.0 1.8E-09 4E-14 128.7 12.8 198 349-606 2207-2408(2439)
281 KOG1064 RAVE (regulator of V-A 99.0 4.3E-09 9.2E-14 125.7 14.6 213 580-927 2182-2401(2439)
282 KOG4190 Uncharacterized conser 98.9 4E-09 8.7E-14 110.7 9.4 210 808-1026 733-957 (1034)
283 KOG0309 Conserved WD40 repeat- 98.9 1.5E-08 3.3E-13 110.5 13.4 277 347-642 21-341 (1081)
284 PLN02919 haloacid dehalogenase 98.9 1.1E-06 2.3E-11 109.9 31.6 276 354-642 571-890 (1057)
285 KOG3914 WD repeat protein WDR4 98.9 2.6E-08 5.6E-13 102.0 13.5 167 351-543 63-233 (390)
286 KOG3617 WD40 and TPR repeat-co 98.9 2E-07 4.4E-12 103.3 20.5 112 351-489 16-131 (1416)
287 PF15492 Nbas_N: Neuroblastoma 98.8 1.2E-06 2.6E-11 86.5 22.7 206 816-1026 3-268 (282)
288 KOG4190 Uncharacterized conser 98.8 3.6E-08 7.7E-13 103.8 12.7 246 347-638 732-986 (1034)
289 PRK04043 tolB translocation pr 98.8 1.4E-06 3E-11 97.7 25.6 157 351-536 188-360 (419)
290 PRK04043 tolB translocation pr 98.8 3.5E-06 7.6E-11 94.5 28.3 207 832-1069 170-397 (419)
291 KOG4532 WD40-like repeat conta 98.8 1.6E-06 3.4E-11 83.9 20.5 243 822-1073 84-334 (344)
292 KOG1897 Damage-specific DNA bi 98.8 0.0012 2.6E-08 76.4 51.5 593 346-1071 302-943 (1096)
293 PRK11138 outer membrane biogen 98.8 8.5E-06 1.9E-10 92.2 30.6 310 473-923 71-393 (394)
294 PF15492 Nbas_N: Neuroblastoma 98.7 3.9E-06 8.5E-11 83.0 23.4 216 857-1079 3-270 (282)
295 PF13360 PQQ_2: PQQ-like domai 98.7 4.2E-06 9E-11 87.8 25.4 224 830-1077 2-237 (238)
296 PF07433 DUF1513: Protein of u 98.7 8.1E-06 1.8E-10 83.7 25.6 247 353-635 7-280 (305)
297 COG5170 CDC55 Serine/threonine 98.7 3.4E-07 7.3E-12 90.0 14.8 226 411-653 25-322 (460)
298 PRK11138 outer membrane biogen 98.7 1.6E-05 3.6E-10 89.9 30.2 211 830-1069 169-393 (394)
299 PF07433 DUF1513: Protein of u 98.7 8.5E-06 1.8E-10 83.6 24.7 185 815-1010 55-278 (305)
300 KOG3617 WD40 and TPR repeat-co 98.7 3.3E-06 7.2E-11 94.1 22.6 114 416-538 19-136 (1416)
301 KOG3914 WD repeat protein WDR4 98.7 2.2E-07 4.7E-12 95.4 12.4 167 414-606 64-233 (390)
302 KOG0309 Conserved WD40 repeat- 98.7 1.2E-07 2.7E-12 103.6 10.9 218 347-597 111-340 (1081)
303 KOG4532 WD40-like repeat conta 98.7 3.7E-06 8E-11 81.4 19.6 188 829-1021 136-335 (344)
304 KOG0396 Uncharacterized conser 98.6 3E-07 6.6E-12 93.2 11.6 160 5-169 115-285 (389)
305 COG5170 CDC55 Serine/threonine 98.6 1.1E-06 2.4E-11 86.4 14.3 184 456-642 25-254 (460)
306 KOG4649 PQQ (pyrrolo-quinoline 98.6 0.00019 4E-09 69.7 28.8 146 463-637 16-162 (354)
307 PF08450 SGL: SMP-30/Gluconola 98.6 3.8E-05 8.2E-10 80.7 27.3 218 814-1057 3-242 (246)
308 KOG4714 Nucleoporin [Nuclear s 98.6 7.2E-07 1.6E-11 85.8 11.9 250 353-638 39-316 (319)
309 KOG2695 WD40 repeat protein [G 98.6 2.9E-07 6.3E-12 92.0 9.5 167 354-544 215-387 (425)
310 KOG0882 Cyclophilin-related pe 98.5 2.3E-06 4.9E-11 88.9 15.6 299 742-1067 8-369 (558)
311 KOG0882 Cyclophilin-related pe 98.5 7.8E-07 1.7E-11 92.2 11.9 213 850-1073 8-234 (558)
312 KOG4714 Nucleoporin [Nuclear s 98.5 1.3E-06 2.8E-11 84.2 12.1 198 854-1071 39-255 (319)
313 PF00400 WD40: WD domain, G-be 98.5 3.6E-07 7.7E-12 63.7 6.2 39 884-922 1-39 (39)
314 PF08450 SGL: SMP-30/Gluconola 98.5 0.00027 5.8E-09 74.2 30.6 224 354-629 3-244 (246)
315 PRK02888 nitrous-oxide reducta 98.5 3E-05 6.5E-10 87.2 23.9 186 817-1018 199-405 (635)
316 KOG1920 IkappaB kinase complex 98.5 0.00095 2.1E-08 79.0 36.6 275 568-924 70-365 (1265)
317 PF06433 Me-amine-dh_H: Methyl 98.5 0.00016 3.6E-09 75.2 26.9 205 815-1026 99-329 (342)
318 PF10607 CLTH: CTLH/CRA C-term 98.5 5.8E-07 1.3E-11 85.1 8.6 132 38-171 5-138 (145)
319 PF13360 PQQ_2: PQQ-like domai 98.5 2.5E-05 5.4E-10 81.9 21.9 227 372-643 2-233 (238)
320 KOG1920 IkappaB kinase complex 98.4 6.7E-05 1.4E-09 88.3 26.3 279 742-1070 67-365 (1265)
321 KOG1832 HIV-1 Vpr-binding prot 98.4 2.9E-07 6.2E-12 102.8 6.0 199 841-1073 1091-1294(1516)
322 KOG2066 Vacuolar assembly/sort 98.4 5.6E-06 1.2E-10 92.7 15.9 191 851-1071 39-234 (846)
323 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.00086 1.9E-08 65.3 28.3 143 358-529 18-161 (354)
324 PRK02888 nitrous-oxide reducta 98.4 2.1E-05 4.6E-10 88.3 19.9 222 820-1071 139-405 (635)
325 KOG1645 RING-finger-containing 98.3 4.5E-05 9.8E-10 78.5 19.0 223 407-640 188-461 (463)
326 KOG1275 PAB-dependent poly(A) 98.3 7.4E-06 1.6E-10 92.7 14.7 181 821-1015 146-340 (1118)
327 KOG2695 WD40 repeat protein [G 98.3 3E-06 6.5E-11 85.0 10.0 153 868-1028 228-387 (425)
328 PF00400 WD40: WD domain, G-be 98.3 2.4E-06 5.2E-11 59.5 6.0 38 976-1015 2-39 (39)
329 KOG2114 Vacuolar assembly/sort 98.2 6.7E-05 1.4E-09 85.0 19.5 205 858-1076 30-249 (933)
330 KOG1645 RING-finger-containing 98.2 0.00014 3.1E-09 74.9 19.1 98 436-539 175-272 (463)
331 PF08513 LisH: LisH; InterPro 98.1 3.7E-06 8.1E-11 51.5 3.7 27 6-32 1-27 (27)
332 KOG2066 Vacuolar assembly/sort 98.1 0.00022 4.7E-09 80.4 19.5 185 746-973 42-233 (846)
333 KOG1897 Damage-specific DNA bi 98.1 0.047 1E-06 63.9 48.8 467 459-1014 489-1001(1096)
334 KOG1275 PAB-dependent poly(A) 98.1 7E-05 1.5E-09 85.1 15.1 185 423-639 146-341 (1118)
335 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.0031 6.7E-08 70.0 28.4 103 359-486 1-128 (353)
336 PF08596 Lgl_C: Lethal giant l 98.1 0.0007 1.5E-08 74.7 22.6 281 745-1069 3-334 (395)
337 KOG3621 WD40 repeat-containing 98.0 0.00059 1.3E-08 76.0 21.5 121 349-490 32-155 (726)
338 cd00216 PQQ_DH Dehydrogenases 98.0 0.004 8.6E-08 72.3 29.3 214 424-642 61-321 (488)
339 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.00055 1.2E-08 75.9 21.3 286 587-961 22-344 (353)
340 PF08596 Lgl_C: Lethal giant l 98.0 0.0023 5E-08 70.7 25.4 268 352-639 3-334 (395)
341 KOG2114 Vacuolar assembly/sort 98.0 0.00099 2.1E-08 75.9 22.5 202 816-1025 29-251 (933)
342 smart00668 CTLH C-terminal to 98.0 6.1E-06 1.3E-10 63.5 3.6 53 37-90 4-56 (58)
343 KOG3621 WD40 repeat-containing 98.0 0.001 2.2E-08 74.3 21.7 281 742-1073 32-356 (726)
344 PF04053 Coatomer_WDAD: Coatom 98.0 0.0015 3.3E-08 73.1 23.4 223 744-1018 33-263 (443)
345 smart00667 LisH Lissencephaly 98.0 1.1E-05 2.5E-10 53.9 4.2 32 4-35 2-33 (34)
346 cd00216 PQQ_DH Dehydrogenases 98.0 0.0039 8.5E-08 72.3 27.6 245 823-1080 111-434 (488)
347 PF06433 Me-amine-dh_H: Methyl 97.9 0.0028 6.2E-08 66.2 23.0 244 813-1073 38-323 (342)
348 PF11768 DUF3312: Protein of u 97.9 0.00048 1.1E-08 75.7 17.9 114 810-926 205-331 (545)
349 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.05 1.1E-06 63.4 34.2 77 831-909 441-518 (527)
350 PF14583 Pectate_lyase22: Olig 97.8 0.0052 1.1E-07 65.6 23.5 175 831-1016 168-380 (386)
351 PF06977 SdiA-regulated: SdiA- 97.8 0.0029 6.3E-08 64.6 20.7 217 846-1067 16-247 (248)
352 PF04841 Vps16_N: Vps16, N-ter 97.8 0.0096 2.1E-07 66.9 26.8 198 816-1026 34-255 (410)
353 PF11768 DUF3312: Protein of u 97.8 0.00025 5.4E-09 77.9 13.3 129 341-492 196-332 (545)
354 PF06977 SdiA-regulated: SdiA- 97.8 0.016 3.6E-07 59.2 25.4 187 349-558 20-234 (248)
355 PF04053 Coatomer_WDAD: Coatom 97.8 0.0034 7.5E-08 70.3 22.3 216 810-1071 32-263 (443)
356 KOG1008 Uncharacterized conser 97.7 1.2E-05 2.5E-10 87.6 1.7 204 349-596 55-275 (783)
357 PF14583 Pectate_lyase22: Olig 97.7 0.022 4.7E-07 61.0 25.4 287 748-1070 40-381 (386)
358 COG3391 Uncharacterized conser 97.7 0.012 2.7E-07 65.6 25.3 207 812-1026 75-292 (381)
359 COG0823 TolB Periplasmic compo 97.6 0.0011 2.4E-08 73.9 15.6 185 810-1008 192-390 (425)
360 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.15 3.1E-06 59.6 33.1 149 875-1026 272-499 (527)
361 COG0823 TolB Periplasmic compo 97.6 0.0037 8.1E-08 69.8 18.3 161 349-537 191-362 (425)
362 PF04841 Vps16_N: Vps16, N-ter 97.5 0.18 4E-06 56.7 31.7 137 817-982 185-323 (410)
363 PF00780 CNH: CNH domain; Int 97.5 0.051 1.1E-06 58.2 25.9 234 753-1026 5-264 (275)
364 PF02897 Peptidase_S9_N: Proly 97.5 0.11 2.5E-06 59.3 29.8 245 352-642 125-406 (414)
365 COG3391 Uncharacterized conser 97.5 0.11 2.4E-06 58.1 28.6 241 812-1073 32-286 (381)
366 KOG2817 Predicted E3 ubiquitin 97.4 0.0013 2.8E-08 68.7 11.0 110 6-117 117-239 (394)
367 PRK13616 lipoprotein LpqB; Pro 97.4 0.033 7.1E-07 65.3 23.9 148 851-1016 349-524 (591)
368 KOG1008 Uncharacterized conser 97.3 0.00014 3E-09 79.7 2.9 199 810-1017 56-275 (783)
369 PF08553 VID27: VID27 cytoplas 97.3 0.008 1.7E-07 71.0 17.2 150 469-639 492-646 (794)
370 PRK13616 lipoprotein LpqB; Pro 97.3 0.013 2.9E-07 68.5 18.9 188 811-1012 350-563 (591)
371 KOG4640 Anaphase-promoting com 97.2 0.0016 3.6E-08 71.7 9.7 94 350-466 20-114 (665)
372 COG3386 Gluconolactonase [Carb 97.2 0.13 2.7E-06 54.9 23.3 220 816-1059 30-274 (307)
373 COG3490 Uncharacterized protei 97.1 0.057 1.2E-06 54.0 18.5 102 351-471 68-175 (366)
374 COG3386 Gluconolactonase [Carb 97.1 0.15 3.2E-06 54.3 23.4 232 356-630 30-275 (307)
375 PF08553 VID27: VID27 cytoplas 97.1 0.029 6.3E-07 66.5 19.6 146 863-1016 492-646 (794)
376 PF14655 RAB3GAP2_N: Rab3 GTPa 97.1 0.1 2.2E-06 57.6 22.3 94 417-511 6-118 (415)
377 PF03178 CPSF_A: CPSF A subuni 97.1 0.12 2.6E-06 56.6 23.4 223 373-639 2-264 (321)
378 COG3490 Uncharacterized protei 97.1 0.26 5.7E-06 49.5 22.3 209 813-1026 70-319 (366)
379 PF02897 Peptidase_S9_N: Proly 97.0 0.25 5.4E-06 56.5 26.5 239 813-1073 126-407 (414)
380 smart00320 WD40 WD40 repeats. 97.0 0.0017 3.7E-08 44.4 5.4 39 884-922 2-40 (40)
381 KOG2395 Protein involved in va 97.0 0.011 2.4E-07 63.9 13.2 150 469-639 344-499 (644)
382 PF03178 CPSF_A: CPSF A subuni 96.9 0.066 1.4E-06 58.7 19.3 179 822-1014 42-262 (321)
383 PF00780 CNH: CNH domain; Int 96.9 0.27 5.9E-06 52.5 23.7 222 820-1073 5-258 (275)
384 KOG4640 Anaphase-promoting com 96.9 0.0046 1E-07 68.3 9.5 94 851-953 20-114 (665)
385 KOG2079 Vacuolar assembly/sort 96.8 0.032 6.9E-07 65.8 15.8 99 365-488 101-202 (1206)
386 PF14870 PSII_BNR: Photosynthe 96.6 0.48 1E-05 50.2 21.7 190 815-1014 108-301 (302)
387 smart00320 WD40 WD40 repeats. 96.6 0.0058 1.2E-07 41.6 5.3 31 985-1015 10-40 (40)
388 PF07995 GSDH: Glucose / Sorbo 96.5 0.89 1.9E-05 49.8 24.7 111 352-478 3-133 (331)
389 PF14655 RAB3GAP2_N: Rab3 GTPa 96.5 0.78 1.7E-05 50.8 23.8 40 987-1026 307-346 (415)
390 KOG2395 Protein involved in va 96.4 0.056 1.2E-06 58.8 13.6 145 865-1016 347-499 (644)
391 TIGR03074 PQQ_membr_DH membran 96.4 3.6 7.7E-05 50.1 37.6 213 424-643 194-480 (764)
392 KOG2079 Vacuolar assembly/sort 96.4 0.029 6.2E-07 66.2 12.3 101 821-924 98-203 (1206)
393 PF07995 GSDH: Glucose / Sorbo 96.4 1.2 2.7E-05 48.6 24.6 243 812-1065 3-330 (331)
394 PHA02713 hypothetical protein; 96.3 0.38 8.2E-06 56.8 21.3 225 832-1084 273-545 (557)
395 PF14727 PHTB1_N: PTHB1 N-term 96.3 2.7 5.8E-05 46.9 32.4 288 755-1076 37-366 (418)
396 PF05096 Glu_cyclase_2: Glutam 96.2 1.3 2.8E-05 45.3 21.3 186 811-1005 45-249 (264)
397 PF15390 DUF4613: Domain of un 96.2 0.11 2.3E-06 57.7 14.6 158 851-1019 19-188 (671)
398 COG3204 Uncharacterized protei 96.2 1.1 2.4E-05 45.8 20.1 204 741-970 83-309 (316)
399 PF14783 BBS2_Mid: Ciliary BBS 96.1 0.11 2.4E-06 44.7 11.3 102 746-878 2-110 (111)
400 PF10647 Gmad1: Lipoprotein Lp 96.1 0.91 2E-05 47.4 20.5 145 811-962 24-183 (253)
401 PF10647 Gmad1: Lipoprotein Lp 96.1 0.35 7.5E-06 50.5 17.4 150 853-1010 25-188 (253)
402 PF14870 PSII_BNR: Photosynthe 96.0 2.6 5.6E-05 44.8 30.3 231 812-1067 63-301 (302)
403 PF14783 BBS2_Mid: Ciliary BBS 96.0 0.4 8.6E-06 41.4 14.1 66 460-532 2-70 (111)
404 cd08044 TAF5_NTD2 TAF5_NTD2 is 96.0 0.0077 1.7E-07 55.3 4.1 82 67-149 25-113 (133)
405 PRK10115 protease 2; Provision 96.0 4.7 0.0001 49.0 28.8 196 811-1017 127-344 (686)
406 KOG2444 WD40 repeat protein [G 95.9 0.028 6.1E-07 54.5 7.5 104 822-925 70-178 (238)
407 PF04494 TFIID_90kDa: WD40 ass 95.9 0.0091 2E-07 55.5 4.1 82 67-149 36-124 (142)
408 PF12894 Apc4_WD40: Anaphase-p 95.8 0.032 7E-07 39.8 5.7 31 412-442 11-41 (47)
409 KOG4441 Proteins containing BT 95.8 0.91 2E-05 53.5 21.3 235 819-1081 282-555 (571)
410 PF15390 DUF4613: Domain of un 95.8 4.4 9.6E-05 45.7 27.4 156 458-639 20-185 (671)
411 PF05694 SBP56: 56kDa selenium 95.7 1.3 2.9E-05 48.2 19.9 192 814-1006 133-392 (461)
412 TIGR03074 PQQ_membr_DH membran 95.7 3.2 7E-05 50.5 25.6 220 866-1087 196-495 (764)
413 PHA02713 hypothetical protein; 95.6 0.72 1.6E-05 54.5 19.4 188 820-1022 302-538 (557)
414 COG3204 Uncharacterized protei 95.5 1.3 2.9E-05 45.2 17.7 170 890-1072 81-265 (316)
415 KOG1898 Splicing factor 3b, su 95.5 8.5 0.00018 46.5 32.8 105 816-925 939-1049(1205)
416 KOG2444 WD40 repeat protein [G 95.4 0.04 8.7E-07 53.5 6.7 108 908-1026 32-141 (238)
417 PF12894 Apc4_WD40: Anaphase-p 95.3 0.051 1.1E-06 38.8 5.3 33 987-1020 11-43 (47)
418 PF10168 Nup88: Nuclear pore c 95.2 4.5 9.9E-05 48.7 24.3 95 809-926 83-181 (717)
419 KOG4499 Ca2+-binding protein R 95.2 3.6 7.8E-05 40.4 18.7 141 457-620 108-263 (310)
420 KOG4499 Ca2+-binding protein R 95.0 1.6 3.4E-05 42.8 15.8 142 852-997 109-263 (310)
421 TIGR02604 Piru_Ver_Nterm putat 94.9 7 0.00015 43.6 23.8 138 811-961 14-200 (367)
422 PF05694 SBP56: 56kDa selenium 94.8 1.4 2.9E-05 48.2 16.4 203 864-1073 87-345 (461)
423 COG4257 Vgb Streptogramin lyas 94.7 5.6 0.00012 40.3 22.5 259 809-1098 60-333 (353)
424 PRK10115 protease 2; Provision 94.6 15 0.00032 44.9 33.1 245 744-1020 127-397 (686)
425 COG4257 Vgb Streptogramin lyas 94.6 5 0.00011 40.6 18.4 201 853-1081 63-274 (353)
426 PF05096 Glu_cyclase_2: Glutam 94.5 6 0.00013 40.6 19.4 189 743-961 44-247 (264)
427 PRK13684 Ycf48-like protein; P 94.4 9.4 0.0002 41.8 27.5 156 851-1016 172-330 (334)
428 KOG1916 Nuclear protein, conta 94.3 0.032 6.9E-07 64.3 3.4 178 831-1016 153-373 (1283)
429 COG3823 Glutamine cyclotransfe 93.8 2.5 5.5E-05 40.7 14.0 178 821-1005 55-247 (262)
430 PF12234 Rav1p_C: RAVE protein 93.8 1.3 2.8E-05 51.6 14.7 124 847-972 25-155 (631)
431 PHA03098 kelch-like protein; P 93.7 3 6.6E-05 49.5 18.8 188 820-1022 293-516 (534)
432 PF12234 Rav1p_C: RAVE protein 93.7 1.6 3.4E-05 50.9 15.3 124 459-595 31-155 (631)
433 KOG1898 Splicing factor 3b, su 93.5 23 0.0005 43.1 37.3 111 948-1071 937-1049(1205)
434 KOG4441 Proteins containing BT 93.3 4.4 9.5E-05 47.9 18.5 193 814-1022 326-551 (571)
435 PRK13684 Ycf48-like protein; P 93.2 15 0.00033 40.2 30.5 157 894-1069 172-330 (334)
436 PHA03098 kelch-like protein; P 93.2 5.2 0.00011 47.6 19.7 193 863-1080 294-519 (534)
437 COG3823 Glutamine cyclotransfe 93.2 3 6.5E-05 40.2 13.4 183 863-1059 55-248 (262)
438 TIGR03118 PEPCTERM_chp_1 conse 93.1 13 0.00027 38.7 21.0 223 414-642 24-281 (336)
439 PHA02790 Kelch-like protein; P 93.0 5.8 0.00013 46.1 19.0 184 820-1020 270-473 (480)
440 TIGR02604 Piru_Ver_Nterm putat 92.9 3.8 8.3E-05 45.7 16.7 150 895-1062 14-205 (367)
441 KOG2280 Vacuolar assembly/sort 92.9 13 0.00028 43.4 20.2 181 831-1026 64-255 (829)
442 PF14761 HPS3_N: Hermansky-Pud 92.9 4.9 0.00011 39.6 14.9 154 812-973 19-214 (215)
443 KOG3630 Nuclear pore complex, 92.7 2 4.3E-05 51.9 14.2 99 812-912 157-261 (1405)
444 KOG2280 Vacuolar assembly/sort 92.6 4.6 9.9E-05 46.9 16.3 59 409-470 81-140 (829)
445 PLN00033 photosystem II stabil 92.4 22 0.00048 39.8 27.3 151 897-1067 241-396 (398)
446 PF14727 PHTB1_N: PTHB1 N-term 92.2 23 0.0005 39.7 32.9 158 467-639 34-203 (418)
447 KOG3630 Nuclear pore complex, 91.9 1.8 3.9E-05 52.3 12.5 146 810-961 100-260 (1405)
448 PF14761 HPS3_N: Hermansky-Pud 91.9 14 0.0003 36.5 17.3 149 865-1017 29-214 (215)
449 KOG3616 Selective LIM binding 91.9 2.2 4.8E-05 48.7 12.6 78 412-498 14-91 (1636)
450 KOG1916 Nuclear protein, conta 91.8 0.39 8.4E-06 55.9 6.9 163 349-538 131-328 (1283)
451 COG5167 VID27 Protein involved 91.7 10 0.00022 41.9 16.7 157 461-640 470-632 (776)
452 PF03022 MRJP: Major royal jel 91.5 17 0.00036 38.8 18.6 189 813-1005 3-253 (287)
453 COG5290 IkappaB kinase complex 91.3 13 0.00028 43.4 17.8 131 946-1089 248-385 (1243)
454 PF13449 Phytase-like: Esteras 91.2 26 0.00057 38.3 22.8 163 851-1017 19-249 (326)
455 PF10214 Rrn6: RNA polymerase 91.2 48 0.001 41.2 26.9 174 809-1019 78-278 (765)
456 KOG2247 WD40 repeat-containing 90.8 0.032 7E-07 60.0 -2.4 146 747-921 38-185 (615)
457 PHA02790 Kelch-like protein; P 90.5 15 0.00034 42.6 18.9 185 863-1073 271-473 (480)
458 PF10313 DUF2415: Uncharacteri 90.4 1.1 2.5E-05 31.0 5.5 32 413-444 1-35 (43)
459 PF10313 DUF2415: Uncharacteri 90.2 0.78 1.7E-05 31.7 4.6 32 351-382 1-34 (43)
460 PF10168 Nup88: Nuclear pore c 90.1 6.6 0.00014 47.4 15.5 84 987-1073 84-182 (717)
461 COG1520 FOG: WD40-like repeat 90.0 36 0.00079 38.0 21.5 200 818-1026 65-277 (370)
462 KOG1900 Nuclear pore complex, 89.8 12 0.00026 46.7 17.0 146 871-1018 96-273 (1311)
463 PF07676 PD40: WD40-like Beta 89.8 1.2 2.6E-05 30.4 5.5 33 346-378 4-38 (39)
464 PLN00033 photosystem II stabil 89.4 41 0.00088 37.7 27.5 152 854-1014 241-396 (398)
465 KOG1983 Tomosyn and related SN 89.2 6.2 0.00013 49.7 14.8 69 946-1021 200-268 (993)
466 PF11725 AvrE: Pathogenicity f 89.0 53 0.0012 42.6 21.9 149 349-534 361-517 (1774)
467 PF02333 Phytase: Phytase; In 88.5 43 0.00093 36.8 19.1 148 831-981 127-299 (381)
468 TIGR03118 PEPCTERM_chp_1 conse 88.3 36 0.00077 35.6 26.2 207 812-1026 24-288 (336)
469 COG5276 Uncharacterized conser 88.3 34 0.00073 35.3 19.5 187 822-1018 96-286 (370)
470 COG4590 ABC-type uncharacteriz 88.3 2 4.3E-05 46.2 8.2 159 809-977 219-390 (733)
471 COG4590 ABC-type uncharacteriz 88.0 18 0.00039 39.4 14.9 162 742-926 219-388 (733)
472 PF02333 Phytase: Phytase; In 88.0 46 0.001 36.6 19.0 198 422-642 66-292 (381)
473 COG3292 Predicted periplasmic 87.5 57 0.0012 37.1 22.6 71 412-490 164-234 (671)
474 PF05935 Arylsulfotrans: Aryls 87.3 26 0.00055 40.7 17.5 147 872-1028 126-312 (477)
475 KOG2377 Uncharacterized conser 86.5 4.4 9.6E-05 43.8 9.6 124 348-491 64-187 (657)
476 PF12657 TFIIIC_delta: Transcr 86.5 3.6 7.7E-05 40.0 8.5 31 413-443 86-122 (173)
477 PF08728 CRT10: CRT10; InterP 86.2 34 0.00074 40.8 17.4 111 811-923 101-245 (717)
478 PF13449 Phytase-like: Esteras 86.1 42 0.00091 36.7 17.6 173 742-924 18-249 (326)
479 KOG1900 Nuclear pore complex, 85.8 8.3 0.00018 48.0 12.5 170 337-534 65-273 (1311)
480 smart00036 CNH Domain found in 85.5 57 0.0012 35.1 24.7 210 809-1026 41-279 (302)
481 PF09862 DUF2089: Protein of u 85.4 3.9 8.5E-05 35.6 7.1 78 2-98 32-113 (113)
482 PF08728 CRT10: CRT10; InterP 85.1 3.5 7.7E-05 48.6 8.9 136 353-488 103-245 (717)
483 PF07569 Hira: TUP1-like enhan 84.9 5 0.00011 40.6 9.0 75 358-446 18-99 (219)
484 KOG4460 Nuclear pore complex, 84.4 27 0.0006 38.9 14.3 93 512-605 112-207 (741)
485 PF14781 BBS2_N: Ciliary BBSom 84.4 31 0.00068 31.2 13.5 119 355-492 3-128 (136)
486 PF03022 MRJP: Major royal jel 84.3 62 0.0013 34.5 20.5 147 482-628 35-253 (287)
487 KOG4659 Uncharacterized conser 84.0 1.3E+02 0.0028 38.0 32.4 417 352-924 366-826 (1899)
488 COG3292 Predicted periplasmic 83.9 85 0.0019 35.8 24.8 75 346-443 160-234 (671)
489 PF07569 Hira: TUP1-like enhan 83.9 4.8 0.0001 40.8 8.3 67 420-489 18-95 (219)
490 KOG4460 Nuclear pore complex, 83.7 22 0.00049 39.5 13.3 42 1040-1081 166-209 (741)
491 KOG2377 Uncharacterized conser 83.4 18 0.00039 39.5 12.3 141 854-1003 25-169 (657)
492 KOG2063 Vacuolar assembly/sort 82.4 96 0.0021 38.2 19.3 249 749-1025 20-276 (877)
493 TIGR03606 non_repeat_PQQ dehyd 82.4 37 0.00081 38.5 15.2 108 945-1062 30-167 (454)
494 PRK13615 lipoprotein LpqB; Pro 81.7 1.2E+02 0.0025 35.8 21.4 153 854-1017 336-502 (557)
495 KOG1983 Tomosyn and related SN 81.5 33 0.00071 43.5 15.9 33 351-384 36-68 (993)
496 COG5167 VID27 Protein involved 81.5 24 0.00053 39.1 12.6 144 863-1017 478-632 (776)
497 PF11635 Med16: Mediator compl 80.6 1.1E+02 0.0023 38.0 19.7 78 987-1065 259-345 (753)
498 PLN02193 nitrile-specifier pro 80.6 1.2E+02 0.0026 35.2 23.5 154 863-1022 228-415 (470)
499 COG1520 FOG: WD40-like repeat 80.4 1E+02 0.0023 34.4 21.7 159 821-982 111-277 (370)
500 PRK13614 lipoprotein LpqB; Pro 79.7 1.3E+02 0.0027 35.6 18.6 161 853-1019 344-520 (573)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-66 Score=513.09 Aligned_cols=492 Identities=21% Similarity=0.312 Sum_probs=398.4
Q ss_pred hHHHHHHHHHHHhHhcHHHHHHHHHHhhCCCcc---HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhhHHHHHHH
Q 001295 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN---MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1106)
Q Consensus 5 ~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~ 81 (1106)
+.|++|+++|+|..+||.+|+.+||.|+|+.+. .+.|.+.++.|+|++++..+..+. .++......+.|++.+|+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~-~~de~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRIS-FEDERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhcc-CcchhhhHHHHHHHHHHHH
Confidence 569999999999999999999999999999886 999999999999999999998884 3334345559999999999
Q ss_pred HHHHhCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccchhhccCCCchHHHHHHHHHHHhhhccCCCCcCcC
Q 001295 82 LEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKL 161 (1106)
Q Consensus 82 lEll~~~~~~~A~~~l~~~l~~l~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~ 161 (1106)
||++..+....|+.+||+.+.+++ +..+++++|+.-+..++-....+...-......|..|+++|+++|+|+.++|++
T Consensus 96 LEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~illP~r- 173 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNILLPKR- 173 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHhhcCChH-
Confidence 999999999999999999999994 589999999887766544432221211225678999999999999999999999
Q ss_pred CchhhHhhhHHHHHHhccCCCCCCCccccccccccCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001295 162 QFPNLKNSSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTP 241 (1106)
Q Consensus 162 rl~~l~~qa~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1106)
||++|++||++||++.|.||| +.+..+||.||.|++ ..+
T Consensus 174 RLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~---------------~qi------------------------- 212 (519)
T KOG0293|consen 174 RLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGR---------------LQI------------------------- 212 (519)
T ss_pred HHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCc---------------ccC-------------------------
Confidence 999999999999999999999 677799999999987 222
Q ss_pred ccccccCCCCcccccccCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCccccccccCCCCCCcccccccccCccccc
Q 001295 242 LAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFT 321 (1106)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1106)
T Consensus 213 -------------------------------------------------------------------------------- 212 (519)
T KOG0293|consen 213 -------------------------------------------------------------------------------- 212 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCcceeeecc-CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCC
Q 001295 322 GHSHSHSHSQAFSTPEDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACS 400 (1106)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~ 400 (1106)
|.+..+++. |+++||.+.||++|+| ||+++.|.+..||++.....+..
T Consensus 213 ------------------p~qt~qil~~htdEVWfl~FS~nGky-LAsaSkD~Taiiw~v~~d~~~kl------------ 261 (519)
T KOG0293|consen 213 ------------------PSQTWQILQDHTDEVWFLQFSHNGKY-LASASKDSTAIIWIVVYDVHFKL------------ 261 (519)
T ss_pred ------------------CchhhhhHhhCCCcEEEEEEcCCCee-EeeccCCceEEEEEEecCcceee------------
Confidence 233334455 9999999999999997 99999999999999875444221
Q ss_pred ccccccccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCC
Q 001295 401 MPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD 480 (1106)
Q Consensus 401 ~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d 480 (1106)
..++-+|..+|..+.||||.+||++|+.|..+.+||+.+|+...... .+|...+.+++|.|||. .+++|+.|
T Consensus 262 ----~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~d 333 (519)
T KOG0293|consen 262 ----KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPD 333 (519)
T ss_pred ----eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCC
Confidence 11578999999999999999999999999999999999998766331 24668999999999999 79999999
Q ss_pred CcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeE
Q 001295 481 KTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT 560 (1106)
Q Consensus 481 ~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 560 (1106)
++|..||+. |..+...++-. ...|.+++.++
T Consensus 334 r~i~~wdlD-gn~~~~W~gvr-------------------------------------------~~~v~dlait~----- 364 (519)
T KOG0293|consen 334 RTIIMWDLD-GNILGNWEGVR-------------------------------------------DPKVHDLAITY----- 364 (519)
T ss_pred CcEEEecCC-cchhhcccccc-------------------------------------------cceeEEEEEcC-----
Confidence 999999954 33222222100 01133334444
Q ss_pred EEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEcc
Q 001295 561 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 640 (1106)
Q Consensus 561 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 640 (1106)
||.++++.+.|..|++++..+......+..+ ..|++.+.|.|++++++.-.+..+++||+.
T Consensus 365 ----------------Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~---~~its~~iS~d~k~~LvnL~~qei~LWDl~ 425 (519)
T KOG0293|consen 365 ----------------DGKYVLLVTVDKKIRLYNREARVDRGLISEE---QPITSFSISKDGKLALVNLQDQEIHLWDLE 425 (519)
T ss_pred ----------------CCcEEEEEecccceeeechhhhhhhcccccc---CceeEEEEcCCCcEEEEEcccCeeEEeecc
Confidence 4447888888889999988776655444433 359999999999999999999999999998
Q ss_pred CCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceee
Q 001295 641 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV 720 (1106)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v 720 (1106)
.. ..++.+.||...
T Consensus 426 e~-~lv~kY~Ghkq~----------------------------------------------------------------- 439 (519)
T KOG0293|consen 426 EN-KLVRKYFGHKQG----------------------------------------------------------------- 439 (519)
T ss_pred hh-hHHHHhhccccc-----------------------------------------------------------------
Confidence 65 666666655431
Q ss_pred EecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcc
Q 001295 721 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM 800 (1106)
Q Consensus 721 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 800 (1106)
.+++-
T Consensus 440 -----------------------------------~fiIr---------------------------------------- 444 (519)
T KOG0293|consen 440 -----------------------------------HFIIR---------------------------------------- 444 (519)
T ss_pred -----------------------------------ceEEE----------------------------------------
Confidence 11111
Q ss_pred ccccCCCCCCCCeeEEEEe-cCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEE
Q 001295 801 TNDVTDSNPEEAVPCFALS-KNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQI 878 (1106)
Q Consensus 801 ~~~~~~~~~~~~v~~l~~s-~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~i 878 (1106)
-||. .+.+++++|+ |+.|+||+..+++.+..+.||...|+|++|+|.+..++|+|++||+|+|
T Consensus 445 ---------------SCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRI 509 (519)
T KOG0293|consen 445 ---------------SCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRI 509 (519)
T ss_pred ---------------eccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEE
Confidence 1111 2557899999 9999999999999999999999999999999999999999999999999
Q ss_pred EEeec
Q 001295 879 YNVRV 883 (1106)
Q Consensus 879 wd~~~ 883 (1106)
|....
T Consensus 510 Wg~~~ 514 (519)
T KOG0293|consen 510 WGPSD 514 (519)
T ss_pred ecCCc
Confidence 98653
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.9e-62 Score=465.54 Aligned_cols=451 Identities=20% Similarity=0.319 Sum_probs=377.3
Q ss_pred hHHHHHHHHHHHhHhcHHHHHHHHHHhhCCCcc----HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhhHHHHHH
Q 001295 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80 (1106)
Q Consensus 5 ~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~ 80 (1106)
+.+|+|||.|||+|+.++++.++||+|+++.+| +..|-+.|.+|+||.+++.++.| .+|+. -+..||||.
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL-KLP~k-----kL~dLYEqi 80 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL-KLPDK-----KLIDLYEQI 80 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc-cCchh-----HHHHHHHHH
Confidence 458999999999999999999999999999998 89999999999999999999999 56654 678899999
Q ss_pred HHHHHhCCCHHHHHHHHHhh--cccccccCHHHHHHHHHHhcccccccchhhccCCCchHHHHHHHHHHHhhhccCCCCc
Q 001295 81 YLEALDKHDRAKAVEILVKD--LKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFR 158 (1106)
Q Consensus 81 ~lEll~~~~~~~A~~~l~~~--l~~l~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~ 158 (1106)
.|||+|.++...|..+||+. +.-|++.+|++|-.|..|+..+.+++.+.|.+ ..|+.|+. .|.+.+..++.+.
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d--ssKEkrRa---~IAQ~ls~EV~VV 155 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD--SSKEKRRA---VIAQALSGEVHVV 155 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc--chHHHHHH---HHHHHhcCceEEc
Confidence 99999999999999999974 66677889999999999999999999999763 46777776 4445566666666
Q ss_pred CcCCchhhHhhhHHHHHHhccCCCCCCCccccccccccCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001295 159 DKLQFPNLKNSSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPV 238 (1106)
Q Consensus 159 ~~~rl~~l~~qa~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1106)
|++||+.|++||+|||+. ++.+||++..+.|++...
T Consensus 156 ppSRLlaLlGQaLKWQqH------------------------------------------QGLLPPGt~iDLFRGkAA-- 191 (508)
T KOG0275|consen 156 PPSRLLALLGQALKWQQH------------------------------------------QGLLPPGTTIDLFRGKAA-- 191 (508)
T ss_pred ChHHHHHHHHHHhhhHhh------------------------------------------cCCCCCCceeeeccchhh--
Confidence 667999999999999999 677889999999998874
Q ss_pred CCCccccccCCCCcccccccCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCccccccccCCCCCCcccccccccCcc
Q 001295 239 PTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPV 318 (1106)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (1106)
+.....+.+
T Consensus 192 -------~K~~~Ee~~---------------------------------------------------------------- 200 (508)
T KOG0275|consen 192 -------MKDQEEERY---------------------------------------------------------------- 200 (508)
T ss_pred -------hhhhHhhhc----------------------------------------------------------------
Confidence 221111111
Q ss_pred cccCCCCCCCCCCCCCCCCCCCcceeee--ccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeecc
Q 001295 319 SFTGHSHSHSHSQAFSTPEDLPKTVTRT--LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDL 396 (1106)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~ 396 (1106)
|..+.+. ++.++.+.|..|||||+| |++|+.||.|.|||+.+|+......++.-|
T Consensus 201 ---------------------Pt~l~r~IKFg~KSh~EcA~FSPDgqy-LvsgSvDGFiEVWny~~GKlrKDLkYQAqd- 257 (508)
T KOG0275|consen 201 ---------------------PTQLARSIKFGQKSHVECARFSPDGQY-LVSGSVDGFIEVWNYTTGKLRKDLKYQAQD- 257 (508)
T ss_pred ---------------------hHHhhhheecccccchhheeeCCCCce-Eeeccccceeeeehhccchhhhhhhhhhhc-
Confidence 2222222 345677899999999997 999999999999999999876543222211
Q ss_pred CcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeec-cccCCeeEEEEcCCCCceEEE
Q 001295 397 GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVI 475 (1106)
Q Consensus 397 ~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~-~h~~~V~~~~~s~d~~~~~l~ 475 (1106)
.+.-+..+|.|++||.|..+||+|+.||.|+||.+.+|.+++. |. +|+..|+|+.|+.|+. .++
T Consensus 258 ----------~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRr---FdrAHtkGvt~l~FSrD~S--qiL 322 (508)
T KOG0275|consen 258 ----------NFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRR---FDRAHTKGVTCLSFSRDNS--QIL 322 (508)
T ss_pred ----------ceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHH---hhhhhccCeeEEEEccCcc--hhh
Confidence 3567888999999999999999999999999999999999884 44 8999999999999999 699
Q ss_pred EecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCC--CeeEEEEE
Q 001295 476 TCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG--RWCTTMAY 553 (1106)
Q Consensus 476 s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~ 553 (1106)
+++.|.+++|.-+++|+++..++||...|+...| ..+|+.+++++.||+|++|+..+.++..++.... ..|.++..
T Consensus 323 S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~ 400 (508)
T KOG0275|consen 323 SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATF--TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVIL 400 (508)
T ss_pred cccccceEEEeccccchhHHHhcCccccccceEE--cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEE
Confidence 9999999999999999999999999999999997 4566899999999999999999998888776543 34555554
Q ss_pred ecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccC-CCCCCcCeEEEccCCCEEEEEeCCC
Q 001295 554 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD-GGLPASPRIRFNKDGCLLAVSTNDN 632 (1106)
Q Consensus 554 s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg 632 (1106)
-|... ..++.+...++|++.++ .|+.++.+... ...+...+++.+|.|.++.+.+.|+
T Consensus 401 ~PKnp--------------------eh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~ 459 (508)
T KOG0275|consen 401 LPKNP--------------------EHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDG 459 (508)
T ss_pred cCCCC--------------------ceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCc
Confidence 44432 46888888999999998 57788887532 2334567889999999999999999
Q ss_pred cEEEEEccCC
Q 001295 633 GIKILATSDG 642 (1106)
Q Consensus 633 ~i~iwd~~~~ 642 (1106)
.++.+...+|
T Consensus 460 vlYCF~~~sG 469 (508)
T KOG0275|consen 460 VLYCFSVLSG 469 (508)
T ss_pred EEEEEEeecC
Confidence 9999998887
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.6e-57 Score=482.35 Aligned_cols=574 Identities=15% Similarity=0.231 Sum_probs=474.8
Q ss_pred EEEecCCCeEEEEEeccCcEEEEecCCccee-EEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCCC
Q 001295 356 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERL-VLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 434 (1106)
Q Consensus 356 ~~~sp~g~~llatg~~dg~i~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 434 (1106)
++||++|+. |++... ..|.+-|+.++... .. .-..-...+++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~~-L~t~~~-d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQH-LYTACG-DRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCCE-EEEecC-ceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 899999995 776553 46889999998873 21 1244567899999999999999999999
Q ss_pred eEEEEEccCCceeeeeeeecc-ccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccC
Q 001295 435 IVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE 513 (1106)
Q Consensus 435 ~v~iwd~~~~~~~~~~~~l~~-h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 513 (1106)
.+++|++.+++.++ .++. |.+||.-++|+|.+. ++++||.|+.++|||+..+.+.+.|+||.+.|.++.|++..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998777 4666 999999999999997 89999999999999999999999999999999999999999
Q ss_pred CceEEEEEecCCeEEEEeCCCCCc-eeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEE
Q 001295 514 NIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 592 (1106)
Q Consensus 514 ~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 592 (1106)
+...|++|..|+++++||+.+... ...+..|...|+++++++|+. .+++++.|..+.+
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~---------------------~~ls~~RDkvi~v 218 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSL---------------------ELLSVGRDKVIIV 218 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCc---------------------eEEEeccCcEEEE
Confidence 888999999999999999996554 667788888888888888865 6999999999999
Q ss_pred EECCCcceeEEEccCCCCCCcCeEEEccC-----CCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCc
Q 001295 593 WDMDSVQLLTSIDADGGLPASPRIRFNKD-----GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI 667 (1106)
Q Consensus 593 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (1106)
||+.+.+...++..... +-++.+-++ |.++++.+.+|.+++||..++ .+....+..... .+
T Consensus 219 wd~~~~~~l~~lp~ye~---~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~-~~~~~~~~~~~~----------e~ 284 (775)
T KOG0319|consen 219 WDLVQYKKLKTLPLYES---LESVVRLREELGGKGEYIITAGGSGVVQYWDSESG-KCVYKQRQSDSE----------EI 284 (775)
T ss_pred eehhhhhhhheechhhh---eeeEEEechhcCCcceEEEEecCCceEEEEecccc-hhhhhhccCCch----------hh
Confidence 99988888777765543 666777776 679999999999999999988 443332221100 00
Q ss_pred CchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceE
Q 001295 668 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS 747 (1106)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~ 747 (1106)
...........++....|.++.++|.++.....++ .|....|.
T Consensus 285 ------------------------------~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~i-------vG~ndEI~ 327 (775)
T KOG0319|consen 285 ------------------------------DHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQI-------VGYNDEIL 327 (775)
T ss_pred ------------------------------hcceeccccCceEEEEccceEEEEEccccEEehhh-------cCCchhhe
Confidence 01111223455667777889999987765444333 35778899
Q ss_pred EEEE-cCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEE
Q 001295 748 RLIF-TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM 826 (1106)
Q Consensus 748 ~~~~-s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~ 826 (1106)
++.| .|+.++++++++.+.+++|++.+... . .+.+ |...|.++....+|-+|+
T Consensus 328 Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c----------------------~--ii~G--H~e~vlSL~~~~~g~lla 381 (775)
T KOG0319|consen 328 DMKFLGPEESHLAVATNSPELRLYTLPTSYC----------------------Q--IIPG--HTEAVLSLDVWSSGDLLA 381 (775)
T ss_pred eeeecCCccceEEEEeCCCceEEEecCCCce----------------------E--EEeC--chhheeeeeecccCcEEE
Confidence 9888 56788999999999999997653211 1 2333 999999999888889999
Q ss_pred EEe-CCeEEEEEcCCC----ceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceE-----E----EEecC
Q 001295 827 SAS-GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-----K----SKLKG 892 (1106)
Q Consensus 827 ~~s-dg~i~vwd~~~~----~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~-----~----~~l~~ 892 (1106)
+|+ |.++++|.++++ -++....+|.+.|.+++++.....+|++++.|+++++|++...+. + .....
T Consensus 382 t~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~a 461 (775)
T KOG0319|consen 382 TGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERA 461 (775)
T ss_pred EecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHh
Confidence 999 999999988433 345667899999999999986678999999999999999876211 1 13357
Q ss_pred cccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEe
Q 001295 893 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE 971 (1106)
Q Consensus 893 h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d 971 (1106)
|...|++|+++|+.+++|+||.|++.+||+++. ...+.++.||.. .+.++.|+|..+.+++ +.|++|+||.
T Consensus 462 HdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-----~~l~~vLsGH~R---Gvw~V~Fs~~dq~laT~SgD~TvKIW~ 533 (775)
T KOG0319|consen 462 HDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-----LRLLGVLSGHTR---GVWCVSFSKNDQLLATCSGDKTVKIWS 533 (775)
T ss_pred hcccccceEecCCCceEEecccccceeeecccC-----ceEEEEeeCCcc---ceEEEEeccccceeEeccCCceEEEEE
Confidence 999999999999999999999999999999995 456778889886 8999999999999999 6999999999
Q ss_pred cCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCC
Q 001295 972 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1051 (1106)
Q Consensus 972 ~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d 1051 (1106)
+.+..|++++. ||...|....|-.+|+.|++++.||.|++|++.++++++.+. .|.+. |+ +++-++ +
T Consensus 534 is~fSClkT~e--GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD-------~H~Dr-vW--aL~~~~-~ 600 (775)
T KOG0319|consen 534 ISTFSCLKTFE--GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD-------AHNDR-VW--ALSVSP-L 600 (775)
T ss_pred eccceeeeeec--CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh-------hccce-eE--EEeecC-c
Confidence 99999999997 999999999999999999999999999999999999999887 44344 88 777777 5
Q ss_pred CCEEEEEeCCCcEEEEeecCCC
Q 001295 1052 PNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus 1052 ~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
...++||+.||.|.+|.=.+.+
T Consensus 601 ~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 601 LDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred cceeEecCCCeEEEEeecCcHH
Confidence 6799999999999999865543
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.9e-56 Score=472.66 Aligned_cols=563 Identities=13% Similarity=0.187 Sum_probs=458.5
Q ss_pred CCCCCCCCCcceeeecc---CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCcccccccc
Q 001295 332 AFSTPEDLPKTVTRTLN---QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALV 408 (1106)
Q Consensus 332 ~~~~~~~~~~~~~~~~~---h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 408 (1106)
.+...+..+........ ..+.+++++.+||+.+ |++++...-+++|++.+++.+.. +
T Consensus 41 ~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~-L~~a~rs~llrv~~L~tgk~irs-------------------w 100 (775)
T KOG0319|consen 41 RVIIIDVATGSIALPSGSNEDEDEITALALTPDEEV-LVTASRSQLLRVWSLPTGKLIRS-------------------W 100 (775)
T ss_pred eEEEEEccCCceecccCCccchhhhheeeecCCccE-EEEeeccceEEEEEcccchHhHh-------------------H
Confidence 33444444444422222 4578999999999995 88889999999999999977653 4
Q ss_pred CC-CCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEe
Q 001295 409 KD-PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 487 (1106)
Q Consensus 409 ~~-h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd 487 (1106)
+. |+++|.-++|+|.|.+||+|+.|+.|+|||+..+.+.. .|+||.+.|.++.|.|+-...+|++|+.|+++++||
T Consensus 101 Ka~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwn 177 (775)
T KOG0319|consen 101 KAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWN 177 (775)
T ss_pred hhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccchhheeecCCCceEEEEE
Confidence 55 99999999999999999999999999999999987766 799999999999999998766799999999999999
Q ss_pred CCCCc-eeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeec
Q 001295 488 ATNGA-KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 566 (1106)
Q Consensus 488 ~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 566 (1106)
+.+.. ++..+..|...|+++.+.++ +..+++++.|..+.+||+...+....++.. ..+.++.+-+++.
T Consensus 178 l~~~~tcl~~~~~H~S~vtsL~~~~d--~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e~~E~vv~l~~~~-------- 246 (775)
T KOG0319|consen 178 LNDKRTCLHTMILHKSAVTSLAFSED--SLELLSVGRDKVIIVWDLVQYKKLKTLPLY-ESLESVVRLREEL-------- 246 (775)
T ss_pred cccCchHHHHHHhhhhheeeeeeccC--CceEEEeccCcEEEEeehhhhhhhheechh-hheeeEEEechhc--------
Confidence 99554 48889999999999998655 578999999999999999765555544332 2345555544411
Q ss_pred cceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhh
Q 001295 567 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 646 (1106)
Q Consensus 567 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 646 (1106)
...+.++++++.+|.+++||..+++++....... ...+..+...+....++..+.|..+.++|..+. +..
T Consensus 247 --------~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l-~i~ 316 (775)
T KOG0319|consen 247 --------GGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDEL-TIV 316 (775)
T ss_pred --------CCcceEEEEecCCceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEcccc-EEe
Confidence 0114589999999999999999998877664432 223666666666667777788899999998888 777
Q ss_pred hhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCC
Q 001295 647 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 726 (1106)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 726 (1106)
+.+-|....+. .+...| ++...+++++..+.+++|++.+.
T Consensus 317 k~ivG~ndEI~--------Dm~~lG--------------------------------~e~~~laVATNs~~lr~y~~~~~ 356 (775)
T KOG0319|consen 317 KQIVGYNDEIL--------DMKFLG--------------------------------PEESHLAVATNSPELRLYTLPTS 356 (775)
T ss_pred hhhcCCchhhe--------eeeecC--------------------------------CccceEEEEeCCCceEEEecCCC
Confidence 77777666554 233333 56788999999999999987754
Q ss_pred CCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCC
Q 001295 727 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 806 (1106)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 806 (1106)
.. ..+ .+|...|.++....+|..|++++.|.++++|.++.+... .... ..+
T Consensus 357 ~c----~ii----~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~-------------------~~~~--a~~ 407 (775)
T KOG0319|consen 357 YC----QII----PGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSK-------------------SLCV--AQA 407 (775)
T ss_pred ce----EEE----eCchhheeeeeecccCcEEEEecCCceEEEEEecCCcch-------------------hhhh--hhh
Confidence 32 222 579999999998888889999999999999987422110 0111 122
Q ss_pred CCCCCCeeEEEEecCC-CEEEEEe-CCeEEEEEcCCCc---------eeeeecCCCCCeeEEEEecCCCceEEEeeCCCc
Q 001295 807 SNPEEAVPCFALSKND-SYVMSAS-GGKISLFNMMTFK---------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS 875 (1106)
Q Consensus 807 ~~~~~~v~~l~~s~~~-~~l~~~s-dg~i~vwd~~~~~---------~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~ 875 (1106)
.+|.+.|.+++++..+ .++++++ |+++++|++...+ +..+...|...|++++++| +.+++|+|+.|.+
T Consensus 408 ~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDkt 486 (775)
T KOG0319|consen 408 NGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKT 486 (775)
T ss_pred cccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccc
Confidence 3499999999998766 4788888 9999999997511 1123457999999999999 8999999999999
Q ss_pred EEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCC
Q 001295 876 IQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 955 (1106)
Q Consensus 876 v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d 955 (1106)
.+||++..+.+..+|.||...|++|.|+|..+.|+++|.|++|+||.+++. .+++.++||.. .|..+.|-.+
T Consensus 487 aKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f-----SClkT~eGH~~---aVlra~F~~~ 558 (775)
T KOG0319|consen 487 AKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF-----SCLKTFEGHTS---AVLRASFIRN 558 (775)
T ss_pred eeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc-----eeeeeecCccc---eeEeeeeeeC
Confidence 999999999999999999999999999999999999999999999999984 47889999985 8999999999
Q ss_pred CcEEEE-EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001295 956 QIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus 956 g~~l~~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
|++|++ +.||-+++|++++.+|+.++. +|...|++++.+++..+++||+.||.|.+|.=.|
T Consensus 559 ~~qliS~~adGliKlWnikt~eC~~tlD--~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 559 GKQLISAGADGLIKLWNIKTNECEMTLD--AHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred CcEEEeccCCCcEEEEeccchhhhhhhh--hccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 999999 699999999999999999986 8999999999999999999999999999996443
No 5
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-51 Score=437.29 Aligned_cols=571 Identities=18% Similarity=0.296 Sum_probs=445.8
Q ss_pred eccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCC
Q 001295 346 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 425 (1106)
Q Consensus 346 ~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 425 (1106)
.+.+...|++++.||+|.. +++-...|...+-++.....++..+| +.+|.|+.|||||+
T Consensus 51 ~~e~~~NI~~ialSp~g~l-llavdE~g~~~lvs~~~r~Vlh~f~f--------------------k~~v~~i~fSPng~ 109 (893)
T KOG0291|consen 51 PLETRYNITRIALSPDGTL-LLAVDERGRALLVSLLSRSVLHRFNF--------------------KRGVGAIKFSPNGK 109 (893)
T ss_pred EeecCCceEEEEeCCCceE-EEEEcCCCcEEEEecccceeeEEEee--------------------cCccceEEECCCCc
Confidence 3448899999999999995 66667789999999988888776544 34899999999999
Q ss_pred EEEEEeCCCeEEEEEccCCce-----eeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCce--eEEEe
Q 001295 426 LFGVAYSRHIVQIYSYHGGDE-----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK--QYIFE 498 (1106)
Q Consensus 426 ~las~~~d~~v~iwd~~~~~~-----~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~ 498 (1106)
++|.|. .+.+.||....... .....++.+|...|.++.|+.|.+ +|++|+.|.++++|+++..+- .+.+.
T Consensus 110 ~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l~ 186 (893)
T KOG0291|consen 110 FFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGSRDLSARLFGVDGNKNLFTYALN 186 (893)
T ss_pred EEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEeccccceEEEEEeccccccceEecc
Confidence 999885 46799998765322 234456789999999999999999 899999999999999986655 67889
Q ss_pred ccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEe-----eC---------CCCeeEEEEEecCCCeEEEee
Q 001295 499 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-----EA---------PGRWCTTMAYSADGTRTYQGF 564 (1106)
Q Consensus 499 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~---------~~~~v~~~~~s~~~~~~~~~~ 564 (1106)
+|.+.|.+.-|..+ ...+++.+.||.+.+|..........- .+ ....+..+.|..-. +.+...
T Consensus 187 gHkd~VvacfF~~~--~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~-k~~ln~ 263 (893)
T KOG0291|consen 187 GHKDYVVACFFGAN--SLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTK-KHYLNQ 263 (893)
T ss_pred CCCcceEEEEeccC--cceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEE-eeeecc
Confidence 99999988877543 367999999999999987632111100 00 00011111111111 112222
Q ss_pred eccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCC-CcEEEEEccCCc
Q 001295 565 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-NGIKILATSDGI 643 (1106)
Q Consensus 565 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-g~i~iwd~~~~~ 643 (1106)
....+++.+|++..+.|++|-..|...+|.+....+++.+....+ .|..++|+..|.+|+.|+.. |.+.||+..+..
T Consensus 264 ~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~--~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs 341 (893)
T KOG0291|consen 264 NSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQ--KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES 341 (893)
T ss_pred cccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccc--eeeEEEecccCCEEEEcCCccceEEEEEeeccc
Confidence 235788999999999999999999999999999999999986644 79999999999999998764 789999886651
Q ss_pred hhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEec
Q 001295 644 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 723 (1106)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~ 723 (1106)
.+-
T Consensus 342 -YVl---------------------------------------------------------------------------- 344 (893)
T KOG0291|consen 342 -YVL---------------------------------------------------------------------------- 344 (893)
T ss_pred -eee----------------------------------------------------------------------------
Confidence 111
Q ss_pred CCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccc
Q 001295 724 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 803 (1106)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 803 (1106)
...+|...+.+++++|||+++++|++||.|+|||.. +|.+...
T Consensus 345 --------------KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~----------------------SgfC~vT- 387 (893)
T KOG0291|consen 345 --------------KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ----------------------SGFCFVT- 387 (893)
T ss_pred --------------eccccccceeeEEECCCCcEEEeccCCCcEEEEecc----------------------CceEEEE-
Confidence 113488899999999999999999999999998865 4443322
Q ss_pred cCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCC-CCeeEEEEecCCCceEEEeeCCC-cEEEEE
Q 001295 804 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDS-SIQIYN 880 (1106)
Q Consensus 804 ~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-~~v~~l~~s~~d~~~la~g~~dg-~v~iwd 880 (1106)
+. .|.+.|+.+.|+..|+.+++.+ ||+|+.||+..++..+++.... -...|++..| .|.++..|+.|. .|+||+
T Consensus 388 Ft--eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS 464 (893)
T KOG0291|consen 388 FT--EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWS 464 (893)
T ss_pred ec--cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEE
Confidence 22 3999999999999999999999 9999999999999999987543 3467888888 788998888886 799999
Q ss_pred eecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEE
Q 001295 881 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 960 (1106)
Q Consensus 881 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~ 960 (1106)
+++|+++..+.||.++|.+++|+|++..|||+|.|.+|++||+-..... ...+... ..+..++|+|||+.|+
T Consensus 465 ~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~-vEtl~i~-------sdvl~vsfrPdG~ela 536 (893)
T KOG0291|consen 465 VQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT-VETLEIR-------SDVLAVSFRPDGKELA 536 (893)
T ss_pred eecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce-eeeEeec-------cceeEEEEcCCCCeEE
Confidence 9999999999999999999999999999999999999999998763211 1122222 3578999999999999
Q ss_pred E-EeCCeEEEEecCCceEeeecccC------------------CCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCcee
Q 001295 961 V-VHETQLAIFETTKLECVKQWVPR------------------ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1021 (1106)
Q Consensus 961 ~-~~d~~v~i~d~~~~~~~~~~~~~------------------~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~ 1021 (1106)
+ .-||.|.+||+..+..+..+... ......+.|++|+||.++++|+....|++|++.++.+
T Consensus 537 VaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vl 616 (893)
T KOG0291|consen 537 VATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVL 616 (893)
T ss_pred EEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhhe
Confidence 9 58999999999887665443211 1246789999999999999999999999999999888
Q ss_pred EEeeCCCc--------------------------------------ccC--------CCCCCCCccceEEEEeCCCCCEE
Q 001295 1022 RCRINPSA--------------------------------------YLP--------AGVSSSNVHPLVIAAHPQEPNEF 1055 (1106)
Q Consensus 1022 ~~~~~~~~--------------------------------------~~~--------~~~~~~~v~~~~~~~~~~d~~~l 1055 (1106)
+.+++.+. .+| ..+....|...++.|+| .|+-+
T Consensus 617 lkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsP-tgraF 695 (893)
T KOG0291|consen 617 LKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSP-TGRAF 695 (893)
T ss_pred eeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECC-CcCee
Confidence 77665211 000 01223346667999999 58899
Q ss_pred EEEeCCCcEEEEeecCC
Q 001295 1056 ALGLSDGGVHVFEPLES 1072 (1106)
Q Consensus 1056 ~t~~~Dg~v~vW~~~~~ 1072 (1106)
++++..| |.|+.+.+.
T Consensus 696 AaatTEG-l~IYsld~~ 711 (893)
T KOG0291|consen 696 AAATTEG-LLIYSLDTT 711 (893)
T ss_pred eeecccc-eEEEecCCc
Confidence 9988877 567776553
No 6
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=8.4e-51 Score=415.65 Aligned_cols=576 Identities=14% Similarity=0.152 Sum_probs=430.9
Q ss_pred EEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCC
Q 001295 354 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR 433 (1106)
Q Consensus 354 ~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 433 (1106)
.-+.-.|.|+.++.+.+ +.|.+-++++..... ++.+|...++-..|||.|.|+|+|...
T Consensus 22 ~~ig~dpkgd~ilY~nG--ksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASGD~s 80 (603)
T KOG0318|consen 22 IIIGGDPKGDNILYTNG--KSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASGDVS 80 (603)
T ss_pred eEeccCCCCCeEEEeCC--CEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeecCCc
Confidence 34455677887777544 678888888765543 478999999999999999999999999
Q ss_pred CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEe-cCCCcEEEEeCCCCceeEEEeccCCCeEEEecccc
Q 001295 434 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK 512 (1106)
Q Consensus 434 ~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~ 512 (1106)
|+|+|||....+.+ ...+++.-.++|..|+|+.|+++ ++++| +.++..+++-.++|..+..+.||...|+++.|-++
T Consensus 81 G~vRIWdtt~~~hi-LKnef~v~aG~I~Di~Wd~ds~R-I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~Kps 158 (603)
T KOG0318|consen 81 GKVRIWDTTQKEHI-LKNEFQVLAGPIKDISWDFDSKR-IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPS 158 (603)
T ss_pred CcEEEEeccCccee-eeeeeeecccccccceeCCCCcE-EEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCC
Confidence 99999998764433 22356677899999999999996 33333 33444444444578889999999999999999877
Q ss_pred CCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEE
Q 001295 513 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 592 (1106)
Q Consensus 513 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 592 (1106)
.. -.+++|+.|++|.+|+=...+-...+..|...|.+ +.|+|||+++++.+.||.|.+
T Consensus 159 RP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~---------------------VRysPDG~~Fat~gsDgki~i 216 (603)
T KOG0318|consen 159 RP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNC---------------------VRYSPDGSRFATAGSDGKIYI 216 (603)
T ss_pred Cc-eEEEeccCCCeEEEeeCCCeeeeecccccccceee---------------------EEECCCCCeEEEecCCccEEE
Confidence 65 58999999999999964433333344445554554 455555558999999999999
Q ss_pred EECCCcceeEEEc-cCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchh
Q 001295 593 WDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPIS 671 (1106)
Q Consensus 593 wd~~~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1106)
||-.+|+.+..+. ...|.+.|.+++|+||+..+++++.|.+++|||+.+. .+.+.+.-....
T Consensus 217 yDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~-slv~t~~~~~~v---------------- 279 (603)
T KOG0318|consen 217 YDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN-SLVSTWPMGSTV---------------- 279 (603)
T ss_pred EcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc-ceEEEeecCCch----------------
Confidence 9999999999997 3445668999999999999999999999999999988 555544321110
Q ss_pred hhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEE
Q 001295 672 AAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIF 751 (1106)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 751 (1106)
-...+.+......+++.+.+|.+..++.......... .+|...|++++.
T Consensus 280 ------------------------~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i-------~GHnK~ITaLtv 328 (603)
T KOG0318|consen 280 ------------------------EDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVI-------SGHNKSITALTV 328 (603)
T ss_pred ------------------------hceEEEEEEeCCeEEEEEcCcEEEEecccCCChhhee-------cccccceeEEEE
Confidence 0111223334678999999999999998875522221 579999999999
Q ss_pred cCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEeCC
Q 001295 752 TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGG 831 (1106)
Q Consensus 752 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg 831 (1106)
++++++|++++.||.|.-|+...+.. ..+.+..|...|.+++.+..+.++-++-|.
T Consensus 329 ~~d~~~i~SgsyDG~I~~W~~~~g~~------------------------~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd 384 (603)
T KOG0318|consen 329 SPDGKTIYSGSYDGHINSWDSGSGTS------------------------DRLAGKGHTNQIKGMAASESGELFTIGWDD 384 (603)
T ss_pred cCCCCEEEeeccCceEEEEecCCccc------------------------cccccccccceEEEEeecCCCcEEEEecCC
Confidence 99999999999999999998653211 113334599999999999888777777799
Q ss_pred eEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEE
Q 001295 832 KISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVL 909 (1106)
Q Consensus 832 ~i~vwd~~~~~~~~~--~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l 909 (1106)
++++.++........ ++- .....+++..+ ++.+++..+.++.+.+=|... +.... -.-...+++++|++..+
T Consensus 385 ~l~~~~~~~~~~t~~~~~~l-g~QP~~lav~~-d~~~avv~~~~~iv~l~~~~~---~~~~~-~~y~~s~vAv~~~~~~v 458 (603)
T KOG0318|consen 385 TLRVISLKDNGYTKSEVVKL-GSQPKGLAVLS-DGGTAVVACISDIVLLQDQTK---VSSIP-IGYESSAVAVSPDGSEV 458 (603)
T ss_pred eEEEEecccCcccccceeec-CCCceeEEEcC-CCCEEEEEecCcEEEEecCCc---ceeec-cccccceEEEcCCCCEE
Confidence 999999865433222 121 22234888888 666777666655544433322 12221 22346789999999999
Q ss_pred EEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceEeeecccCCCCC
Q 001295 910 VSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSA 988 (1106)
Q Consensus 910 ~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~~~~~~~~~h~~ 988 (1106)
|.|+.|+.|.||.+...+......+. .|. ..|+.++||||+.|||++ ..+.+.+||+.+.+..... -.-|..
T Consensus 459 aVGG~Dgkvhvysl~g~~l~ee~~~~---~h~---a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~-w~FHta 531 (603)
T KOG0318|consen 459 AVGGQDGKVHVYSLSGDELKEEAKLL---EHR---AAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNR-WAFHTA 531 (603)
T ss_pred EEecccceEEEEEecCCcccceeeee---ccc---CCceEEEECCCCcEEEEeccCCcEEEEEcccCceecce-eeeeee
Confidence 99999999999999886643222222 222 489999999999999997 6789999999988773322 225899
Q ss_pred CeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEe
Q 001295 989 PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFE 1068 (1106)
Q Consensus 989 ~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~ 1068 (1106)
.|.+++|+|+..++|||+.|-+|.||+++.-...-.++ ..|..+ |+ .+.|. |...+++.+.|.+|++|+
T Consensus 532 kI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik------nAH~~g-Vn--~v~wl--de~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 532 KINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK------NAHLGG-VN--SVAWL--DESTVVSSGQDANIKVWN 600 (603)
T ss_pred eEEEEEeCCCceEEEeccccceEEEEEccChhhheEec------cccccC-ce--eEEEe--cCceEEeccCcceeEEec
Confidence 99999999999999999999999999998765553333 233344 77 78888 578999999999999999
Q ss_pred ec
Q 001295 1069 PL 1070 (1106)
Q Consensus 1069 ~~ 1070 (1106)
+.
T Consensus 601 v~ 602 (603)
T KOG0318|consen 601 VT 602 (603)
T ss_pred cc
Confidence 74
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-54 Score=423.80 Aligned_cols=377 Identities=21% Similarity=0.346 Sum_probs=301.6
Q ss_pred CCCCCCCCCCcceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCC
Q 001295 331 QAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 410 (1106)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 410 (1106)
++++............-+|..+|-|++|+|+|++ ||+|+.|.++++||+.+...+. +.++
T Consensus 96 qavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~-l~tGsGD~TvR~WD~~TeTp~~-------------------t~Kg 155 (480)
T KOG0271|consen 96 QAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSR-LVTGSGDTTVRLWDLDTETPLF-------------------TCKG 155 (480)
T ss_pred chhhcccccceeccccCCCCCcEEEEEecCCCce-EEecCCCceEEeeccCCCCcce-------------------eecC
Confidence 3455555555555556679999999999999996 9999999999999999887766 4799
Q ss_pred CCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcC-----CCCceEEEEecCCCcEEE
Q 001295 411 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-----PNKQLCVITCGDDKTIKV 485 (1106)
Q Consensus 411 h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~-----d~~~~~l~s~~~d~~i~i 485 (1106)
|...|.|++|||||+.||+|+.||+|++||.++|+++.. .|.+|...|++++|-| ..+ +|++++.||+|+|
T Consensus 156 H~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrI 231 (480)
T KOG0271|consen 156 HKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRI 231 (480)
T ss_pred CccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEE
Confidence 999999999999999999999999999999999987754 5889999999999965 455 7999999999999
Q ss_pred EeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeee
Q 001295 486 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 565 (1106)
Q Consensus 486 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~ 565 (1106)
||+..+.++..+.||+.+|+|++|-. + .++++|+.|++|++|+...+.....+.+|.++|+.++.+.|--
T Consensus 232 Wd~~~~~~~~~lsgHT~~VTCvrwGG--~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~------- 301 (480)
T KOG0271|consen 232 WDTKLGTCVRTLSGHTASVTCVRWGG--E-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYV------- 301 (480)
T ss_pred EEccCceEEEEeccCccceEEEEEcC--C-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhh-------
Confidence 99999999999999999999999842 3 4999999999999999999888899999999999998876642
Q ss_pred ccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCC-CCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCch
Q 001295 566 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 644 (1106)
Q Consensus 566 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 644 (1106)
|-+|..|.+ +.....+..... ...-.....-..+..|++|++|.++.+|+.....+
T Consensus 302 ---------------LRtgaf~~t--------~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk 358 (480)
T KOG0271|consen 302 ---------------LRTGAFDHT--------GRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK 358 (480)
T ss_pred ---------------hhccccccc--------cccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc
Confidence 222222210 000000000000 00000000011223444444444444443221111
Q ss_pred hhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecC
Q 001295 645 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 724 (1106)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 724 (1106)
+
T Consensus 359 p------------------------------------------------------------------------------- 359 (480)
T KOG0271|consen 359 P------------------------------------------------------------------------------- 359 (480)
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccccc
Q 001295 725 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 804 (1106)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 804 (1106)
+.. +
T Consensus 360 ---------------------------------------------------------------------------i~r-m 363 (480)
T KOG0271|consen 360 ---------------------------------------------------------------------------ITR-M 363 (480)
T ss_pred ---------------------------------------------------------------------------hhh-h
Confidence 110 2
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec
Q 001295 805 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 883 (1106)
Q Consensus 805 ~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~ 883 (1106)
. +|..-|..+.||||++++|+++ |..|++|+..+|+.+.+|++|-..|..++|+. |.++|++|+.|.++++|++.+
T Consensus 364 t--gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 364 T--GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred h--chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEeee
Confidence 2 2888899999999999999999 99999999999999999999999999999999 999999999999999999999
Q ss_pred ceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEe
Q 001295 884 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922 (1106)
Q Consensus 884 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd 922 (1106)
.++...|.||.++|.++.|+|||..+++|+.|..+++|.
T Consensus 441 kKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 441 KKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999999999999999995
No 8
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2e-48 Score=398.29 Aligned_cols=540 Identities=16% Similarity=0.207 Sum_probs=425.0
Q ss_pred eeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc
Q 001295 343 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 422 (1106)
Q Consensus 343 ~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 422 (1106)
+..--+|...++-..|||.|.| +|+|...|+|+|||....+.+.+.+|+ .-.++|..++|++
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~y-iASGD~sG~vRIWdtt~~~hiLKnef~-----------------v~aG~I~Di~Wd~ 113 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFY-IASGDVSGKVRIWDTTQKEHILKNEFQ-----------------VLAGPIKDISWDF 113 (603)
T ss_pred eeeeccccceeEEEEeCCCceE-EeecCCcCcEEEEeccCcceeeeeeee-----------------ecccccccceeCC
Confidence 3334459999999999999996 999999999999999876666555544 3356899999999
Q ss_pred CCCEEEEEeCC----CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEe
Q 001295 423 DGSLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 498 (1106)
Q Consensus 423 dg~~las~~~d----~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 498 (1106)
|+++|++.++. |.+.+||. |..+. .+.||...|++++|-|.-.. .++||++|++|.+|+=.--+...++.
T Consensus 114 ds~RI~avGEGrerfg~~F~~DS--G~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r 187 (603)
T KOG0318|consen 114 DSKRIAAVGEGRERFGHVFLWDS--GNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFR 187 (603)
T ss_pred CCcEEEEEecCccceeEEEEecC--CCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeeccc
Confidence 99999987643 34566664 44344 68899999999999998776 89999999999999866666677888
Q ss_pred ccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEee---CCCCeeEEEEEecCCCeEEEeeeccceeEEEEc
Q 001295 499 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 575 (1106)
Q Consensus 499 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~ 575 (1106)
.|...|.++.|+| ||.++++.+.||++.+||=.+++.+..+. .|.+.|..++|+||++
T Consensus 188 ~HskFV~~VRysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~----------------- 248 (603)
T KOG0318|consen 188 EHSKFVNCVRYSP--DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST----------------- 248 (603)
T ss_pred ccccceeeEEECC--CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc-----------------
Confidence 9999999999865 46899999999999999999999888877 6777777777777766
Q ss_pred CCCCEEEEEECCCeEEEEECCCcceeEEEccCCCC-CCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhccccc
Q 001295 576 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL-PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY 654 (1106)
Q Consensus 576 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 654 (1106)
.+++++.|.+++|||+.+.++++++...... .....+.|- ...|++.+.+|+|.+++...+ ..++.+.+|..
T Consensus 249 ----~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~-~~~~~i~GHnK 321 (603)
T KOG0318|consen 249 ----QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP-SVLKVISGHNK 321 (603)
T ss_pred ----eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC-Chhheeccccc
Confidence 7999999999999999999999998654331 122344554 678899999999999999998 48999999988
Q ss_pred ccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCcccee
Q 001295 655 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS 734 (1106)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~ 734 (1106)
.+... ..++++.++++++.||.|.-|+...+......
T Consensus 322 ~ITaL-----------------------------------------tv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~-- 358 (603)
T KOG0318|consen 322 SITAL-----------------------------------------TVSPDGKTIYSGSYDGHINSWDSGSGTSDRLA-- 358 (603)
T ss_pred ceeEE-----------------------------------------EEcCCCCEEEeeccCceEEEEecCCccccccc--
Confidence 65521 23457899999999999999999875543322
Q ss_pred cccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCee
Q 001295 735 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP 814 (1106)
Q Consensus 735 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~ 814 (1106)
...|...|.+++.+..+. +++.+.|.++++.++...... .... . .......
T Consensus 359 ----g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t------------------~~~~-~-----~lg~QP~ 409 (603)
T KOG0318|consen 359 ----GKGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYT------------------KSEV-V-----KLGSQPK 409 (603)
T ss_pred ----cccccceEEEEeecCCCc-EEEEecCCeEEEEecccCccc------------------ccce-e-----ecCCCce
Confidence 245899999999988776 788888889998776432221 0000 0 0233445
Q ss_pred EEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEE--EEecC
Q 001295 815 CFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK--SKLKG 892 (1106)
Q Consensus 815 ~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~--~~l~~ 892 (1106)
+++..+++.+++.++++.|.+..-.+ .+.+.. ..-...+++++| ++..+|+|++||.|+||.+..+.+. ..+..
T Consensus 410 ~lav~~d~~~avv~~~~~iv~l~~~~--~~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~ 485 (603)
T KOG0318|consen 410 GLAVLSDGGTAVVACISDIVLLQDQT--KVSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLE 485 (603)
T ss_pred eEEEcCCCCEEEEEecCcEEEEecCC--cceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeec
Confidence 89999999888888877777765322 222222 334578999999 9999999999999999999876533 45677
Q ss_pred cccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEe
Q 001295 893 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE 971 (1106)
Q Consensus 893 h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d 971 (1106)
|.++|++++||||+.+||++...+.+.+||+.+.+... ....-|. ..|.+++|+|+.+++|+ +-|..|.||+
T Consensus 486 h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~----~~w~FHt---akI~~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 486 HRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKT----NRWAFHT---AKINCVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred ccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceec----ceeeeee---eeEEEEEeCCCceEEEeccccceEEEEE
Confidence 99999999999999999999999999999999866522 2222233 37899999999999999 5899999999
Q ss_pred cCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcC
Q 001295 972 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1017 (1106)
Q Consensus 972 ~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~ 1017 (1106)
++.-... .....+|...|+.+.|- |...|++.+.|..|++|++.
T Consensus 559 v~kP~~~-i~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 559 VKKPAKH-IIIKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred ccChhhh-eEeccccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence 9875544 23335888889999997 45678888899999999874
No 9
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.2e-49 Score=417.18 Aligned_cols=613 Identities=14% Similarity=0.206 Sum_probs=452.4
Q ss_pred CCCcEEEEEe-cCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295 350 GSSPMSMDFH-PVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 428 (1106)
Q Consensus 350 ~~~v~~~~~s-p~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 428 (1106)
...+..+..+ ..|++ +|. +..-.|.+||+.+|+..... +...-...|+|++-+||.-+||
T Consensus 21 ~aN~~~~~~~~~~Gr~-va~-~a~E~vn~WdlRtge~~~~l-----------------~~~~~k~evt~l~~~~d~l~lA 81 (888)
T KOG0306|consen 21 VANINFVVKRSGKGRA-VAV-SALEQVNIWDLRTGEIEKKL-----------------ILLKKKAEVTCLRSSDDILLLA 81 (888)
T ss_pred ccceeEEEeecCCCcE-EEE-eccccEeEEeeecchhhhhh-----------------hhhcccceEEEeeccCCcceEE
Confidence 3444444443 45885 332 33468999999999654320 1223346899999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEe
Q 001295 429 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 508 (1106)
Q Consensus 429 s~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 508 (1106)
+|..||.|+||+..++.... ++.||...|+++.|...|. .|+|||.|+.|.+||+-...-...+.||...|+.+-
T Consensus 82 VGYaDGsVqif~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~ 156 (888)
T KOG0306|consen 82 VGYADGSVQIFSLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQAL 156 (888)
T ss_pred EEecCceEEeeccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHh
Confidence 99999999999999875443 7899999999999999999 899999999999999998888999999999999887
Q ss_pred ccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCC
Q 001295 509 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 588 (1106)
Q Consensus 509 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 588 (1106)
|.. +.+++++.+.|+.|++||+.+..+..+...|...+..+++.++ .+++++.|+
T Consensus 157 F~~--~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~-----------------------~lvt~~~ds 211 (888)
T KOG0306|consen 157 FLN--GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEK-----------------------LLVTAGTDS 211 (888)
T ss_pred ccC--CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecc-----------------------eEEEEecCC
Confidence 754 3379999999999999999998888888888888888777662 589999999
Q ss_pred eEEEEECCCc-------c-----eeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhccccccc
Q 001295 589 SIKFWDMDSV-------Q-----LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDA 656 (1106)
Q Consensus 589 ~i~iwd~~~~-------~-----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 656 (1106)
.+++|++... . ...++... ..+....++..++++++++-+.|..+.++.+.+..+..+.+...-...
T Consensus 212 e~~v~~L~~~~D~~~~~~~~s~~~~G~~~rq-sk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~ 290 (888)
T KOG0306|consen 212 ELKVWELAFEDDEKETNRYISTKLRGTFIRQ-SKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRA 290 (888)
T ss_pred ceEEEEeecccccccccccceeeccceeeec-cCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHh
Confidence 9999998211 0 11111111 122345577778899999999999999999987755444332200000
Q ss_pred ccCCCCCCCCcCchhhhHhhh--hcccccccccccccccCCCCCCccccCCC-CccccccCCCceeeEecCCCCC--Ccc
Q 001295 657 SRTSENSKPTISPISAAAAAA--ATSAGLADRAASMVSIPGMNGDVRSLADV-KPRITEESNDKSKVWKLTELSE--PNQ 731 (1106)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~~~--~~~ 731 (1106)
..... .. . ...+...... ............+.. -+....... ..++. -.++++..|.++.... +..
T Consensus 291 Kkka~-t~-e-~~~~v~~sl~~~i~r~~~ir~~~kiks-----~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~ 361 (888)
T KOG0306|consen 291 KKKAE-TE-E-NEDDVEKSLSDEIKRLETIRTSAKIKS-----FDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEA 361 (888)
T ss_pred hhhcc-cc-c-cccchhhhHHHHHHHHHheechhheeE-----EEEEecCCcceeEEE-eecCceEEEEeccCCCCCccc
Confidence 00000 00 0 0000000000 000000000000000 000001111 22333 5567888888776221 112
Q ss_pred ceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCC
Q 001295 732 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE 811 (1106)
Q Consensus 732 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 811 (1106)
.+.-.+...+|...|.+++++.+...++ ++.++.+++|+.. +.+++... ...
T Consensus 362 ~~~~~i~~~GHR~dVRsl~vS~d~~~~~-Sga~~SikiWn~~----------------------t~kciRTi-----~~~ 413 (888)
T KOG0306|consen 362 DRTSNIEIGGHRSDVRSLCVSSDSILLA-SGAGESIKIWNRD----------------------TLKCIRTI-----TCG 413 (888)
T ss_pred cccceeeeccchhheeEEEeecCceeee-ecCCCcEEEEEcc----------------------CcceeEEe-----ccc
Confidence 2222233356999999999999987444 4455688888765 33333321 344
Q ss_pred CeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec-----ce
Q 001295 812 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-----DE 885 (1106)
Q Consensus 812 ~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~-----~~ 885 (1106)
.+.+..|-|.++++++|. .|.+.+||+.+...+.+.++|.+.|..++.+| |++.+++|+.|.+|++||..- |.
T Consensus 414 y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt 492 (888)
T KOG0306|consen 414 YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGT 492 (888)
T ss_pred cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcc
Confidence 788999999999999999 79999999999999999999999999999999 999999999999999999752 21
Q ss_pred EEEEec-------CcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcE
Q 001295 886 VKSKLK-------GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 958 (1106)
Q Consensus 886 ~~~~l~-------~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~ 958 (1106)
..+.+. .-.+.|.|+.+||||++||.+=-|.+|+||-+++-+ +.-.+.||.. +|.++..|||+++
T Consensus 493 ~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK-----FflsLYGHkL---PV~smDIS~DSkl 564 (888)
T KOG0306|consen 493 QKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK-----FFLSLYGHKL---PVLSMDISPDSKL 564 (888)
T ss_pred cceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee-----eeeeeccccc---ceeEEeccCCcCe
Confidence 111111 134679999999999999999999999999999843 4555678876 8999999999999
Q ss_pred EEE-EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCC
Q 001295 959 FLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSS 1037 (1106)
Q Consensus 959 l~~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1037 (1106)
+++ +.|+.|++|-+.-|.|.+.+. +|...|.++.|-|+..++.+++.|+.|+-||....+.+..+. +|+.
T Consensus 565 ivTgSADKnVKiWGLdFGDCHKS~f--AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~-------~H~~ 635 (888)
T KOG0306|consen 565 IVTGSADKNVKIWGLDFGDCHKSFF--AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD-------GHHS 635 (888)
T ss_pred EEeccCCCceEEeccccchhhhhhh--cccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec-------cchh
Confidence 999 589999999999999999998 899999999999999999999999999999999999998887 6555
Q ss_pred CCccceEEEEeCCCCCEEEEEeCCCcEEEEeecC
Q 001295 1038 SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus 1038 ~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
. ++ +++.+| +|.++++++.|.+|++|.-.+
T Consensus 636 e-v~--cLav~~-~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 636 E-VW--CLAVSP-NGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred e-ee--eeEEcC-CCCeEEeccCCceeEeeeccC
Confidence 5 88 788888 699999999999999999765
No 10
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.8e-47 Score=402.33 Aligned_cols=540 Identities=15% Similarity=0.232 Sum_probs=422.0
Q ss_pred EEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCC
Q 001295 354 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR 433 (1106)
Q Consensus 354 ~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 433 (1106)
-.+.|++||..++. ...+.|.|+|+.+++... ..-.+...|.+++.||+|.+|++....
T Consensus 18 Gnl~ft~dG~sviS--PvGNrvsv~dLknN~S~T-------------------l~~e~~~NI~~ialSp~g~lllavdE~ 76 (893)
T KOG0291|consen 18 GNLVFTKDGNSVIS--PVGNRVSVFDLKNNKSYT-------------------LPLETRYNITRIALSPDGTLLLAVDER 76 (893)
T ss_pred CcEEECCCCCEEEe--ccCCEEEEEEccCCccee-------------------EEeecCCceEEEEeCCCceEEEEEcCC
Confidence 35789999987443 445799999998765533 124567789999999999999999999
Q ss_pred CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCc--------eeEEEeccCCCeE
Q 001295 434 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA--------KQYIFEGHEAPVY 505 (1106)
Q Consensus 434 ~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--------~~~~~~~h~~~v~ 505 (1106)
|...+-++.....++. + ....+|.++.|||||+ ++|.|. .+.+.||...... ..+++.+|...|.
T Consensus 77 g~~~lvs~~~r~Vlh~---f-~fk~~v~~i~fSPng~--~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~ 149 (893)
T KOG0291|consen 77 GRALLVSLLSRSVLHR---F-NFKRGVGAIKFSPNGK--FFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDIT 149 (893)
T ss_pred CcEEEEecccceeeEE---E-eecCccceEEECCCCc--EEEEEe-cceeEEEecCcchhcccCcceEeeeecCCcccee
Confidence 9998888877544432 1 2457899999999999 455444 5789999865322 2457789999999
Q ss_pred EEeccccCCceEEEEEecCCeEEEEeCCCCCc--eeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEE
Q 001295 506 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 583 (1106)
Q Consensus 506 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 583 (1106)
++.|+.+ .++|++|+.|.++++|+++..+. ...+.+|...|....|..+. ..+++
T Consensus 150 si~Ws~D--Sr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~---------------------~~l~t 206 (893)
T KOG0291|consen 150 SIDWSDD--SRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANS---------------------LDLYT 206 (893)
T ss_pred EEEeccC--CceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCc---------------------ceEEE
Confidence 9999654 47999999999999999987666 33455666666655555554 46899
Q ss_pred EECCCeEEEEECCC-----------------------cce---------eEEEccCCCCCCcCeEEEccCCCEEEEEeCC
Q 001295 584 AGDDFSIKFWDMDS-----------------------VQL---------LTSIDADGGLPASPRIRFNKDGCLLAVSTND 631 (1106)
Q Consensus 584 ~~~d~~i~iwd~~~-----------------------~~~---------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 631 (1106)
.+.||.+.+|.... ++. ....-.......|++.+|++..+.|++|-..
T Consensus 207 vskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFss 286 (893)
T KOG0291|consen 207 VSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSS 286 (893)
T ss_pred EecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecC
Confidence 99999999998751 111 0000111122468888999988999999998
Q ss_pred CcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCcccc
Q 001295 632 NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT 711 (1106)
Q Consensus 632 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 711 (1106)
|.+.+|++.+- .+++.+
T Consensus 287 G~f~LyelP~f-~lih~L-------------------------------------------------------------- 303 (893)
T KOG0291|consen 287 GEFGLYELPDF-NLIHSL-------------------------------------------------------------- 303 (893)
T ss_pred CeeEEEecCCc-eEEEEe--------------------------------------------------------------
Confidence 98888887543 222211
Q ss_pred ccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecC-ceEEEeeccccccCCCCccccccCcc
Q 001295 712 EESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATASVAPQ 790 (1106)
Q Consensus 712 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~ 790 (1106)
.....+|..++|+..|..++.++.. |.+.||+++.+.+-
T Consensus 304 ----------------------------Sis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYV------------ 343 (893)
T KOG0291|consen 304 ----------------------------SISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYV------------ 343 (893)
T ss_pred ----------------------------ecccceeeEEEecccCCEEEEcCCccceEEEEEeecccee------------
Confidence 0134678999999999999999986 99999998754331
Q ss_pred ccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEE
Q 001295 791 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI 869 (1106)
Q Consensus 791 ~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~ 869 (1106)
++.++|...+++++++|||+++|+|+ ||+|+|||..++-|..+|..|...|+.+.|+. .++.+++
T Consensus 344 -------------lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~lls 409 (893)
T KOG0291|consen 344 -------------LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLS 409 (893)
T ss_pred -------------eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEE
Confidence 22245999999999999999999999 89999999999999999999999999999999 9999999
Q ss_pred eeCCCcEEEEEeecceEEEEecCcc-cCeeEEEEecCCCEEEEEcCCC-cEEEEeCCCcccccceeecccCCCCCCCCCC
Q 001295 870 GMDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVLVSSGADS-QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD 947 (1106)
Q Consensus 870 g~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~s~s~Dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i 947 (1106)
.+-||+|+.||+...+..+++.... -...||+..|.|..++.|+.|. .|.||++++|+ .+.++.||.. +|
T Consensus 410 sSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq-----llDiLsGHEg---PV 481 (893)
T KOG0291|consen 410 SSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ-----LLDILSGHEG---PV 481 (893)
T ss_pred eecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe-----eeehhcCCCC---cc
Confidence 9999999999999999999997643 3456788888899999999886 49999999965 5788888874 99
Q ss_pred ceEEEcCCCcEEEE-EeCCeEEEEecCCc-eEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEee
Q 001295 948 TRVQFHQDQIHFLV-VHETQLAIFETTKL-ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1025 (1106)
Q Consensus 948 ~~~~~s~dg~~l~~-~~d~~v~i~d~~~~-~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~ 1025 (1106)
.+++|+|+|..|++ +-|++|++||+-.. ..+..+ .+...++.++|+|||+-|++++.||.|.+||+..+.....+
T Consensus 482 s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl---~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~I 558 (893)
T KOG0291|consen 482 SGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL---EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSI 558 (893)
T ss_pred eeeEEccccCeEEeccccceEEEEEeeccCceeeeE---eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccc
Confidence 99999999999999 69999999998554 233333 34789999999999999999999999999999988777555
Q ss_pred CCCcccCCC----------CCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295 1026 NPSAYLPAG----------VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus 1026 ~~~~~~~~~----------~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
.....+..| +....-.-..++|++ ||..+++|+..+.|.++++.++-
T Consensus 559 dgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa-DG~~IlAgG~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 559 DGRKDLSGGRKETDRITAENSAKGKTFTTICYSA-DGKCILAGGESNSICIYDVPEGV 615 (893)
T ss_pred cchhhccccccccceeehhhcccCCceEEEEEcC-CCCEEEecCCcccEEEEECchhh
Confidence 432222222 111112234899999 79999999999999999998876
No 11
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3e-48 Score=412.93 Aligned_cols=510 Identities=13% Similarity=0.212 Sum_probs=404.0
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 428 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 428 (1106)
...+|+|+.-+|+.- +||.|..||.|+||+..++..+. .+.||...|+++.|...|.+||
T Consensus 64 ~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~-------------------tfngHK~AVt~l~fd~~G~rla 123 (888)
T KOG0306|consen 64 KKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILI-------------------TFNGHKAAVTTLKFDKIGTRLA 123 (888)
T ss_pred ccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceee-------------------eecccccceEEEEEcccCceEe
Confidence 446899999999887 69999999999999999876554 3789999999999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEe
Q 001295 429 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 508 (1106)
Q Consensus 429 s~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 508 (1106)
+||.|+.|.+||+-...-.. .+.||.+.|+..-|..+.+ ++++.+.|+.|++||+++..|..+...|.+.+++++
T Consensus 124 SGskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~ 198 (888)
T KOG0306|consen 124 SGSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALV 198 (888)
T ss_pred ecCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEEE
Confidence 99999999999998754333 6899999999999998777 899999999999999999999999999999999999
Q ss_pred ccccCCceEEEEEecCCeEEEEeCCCCCce------------eEe-eCCCCeeEEEEEecCCCeEE--------------
Q 001295 509 PHHKENIQFIFSTALDGKIKAWLYDNLGSR------------VDY-EAPGRWCTTMAYSADGTRTY-------------- 561 (1106)
Q Consensus 509 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------------~~~-~~~~~~v~~~~~s~~~~~~~-------------- 561 (1106)
+.. +.+++++.|+.+++|++...... -.+ ....+....+...++++.++
T Consensus 199 ~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~ 274 (888)
T KOG0306|consen 199 LDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIR 274 (888)
T ss_pred Eec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeec
Confidence 754 57999999999999998211000 000 00111122222223332100
Q ss_pred -----------------------------------------EeeeccceeEEEEcCCCCE--EEEEECCCeEEEEECCC-
Q 001295 562 -----------------------------------------QGFRKRSLGVVQFDTTKNR--FLAAGDDFSIKFWDMDS- 597 (1106)
Q Consensus 562 -----------------------------------------~~~~~~~i~~~~~~~~~~~--l~~~~~d~~i~iwd~~~- 597 (1106)
.-.....+..+++.|.+.. .+..-.++++..|.+..
T Consensus 275 s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s 354 (888)
T KOG0306|consen 275 SKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENS 354 (888)
T ss_pred CHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccC
Confidence 0011224555666665432 22236678888888765
Q ss_pred cc------eeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchh
Q 001295 598 VQ------LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPIS 671 (1106)
Q Consensus 598 ~~------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1106)
+. .+..+...+|...|.+++++.+...+++|.. +.+.+|+..+. ++++++
T Consensus 355 ~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~-kciRTi---------------------- 410 (888)
T KOG0306|consen 355 GKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTL-KCIRTI---------------------- 410 (888)
T ss_pred CCCCccccccceeeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCc-ceeEEe----------------------
Confidence 21 2233444455678999999999888887765 79999998877 444433
Q ss_pred hhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEE
Q 001295 672 AAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIF 751 (1106)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 751 (1106)
....+.+..|
T Consensus 411 ----------------------------------------------------------------------~~~y~l~~~F 420 (888)
T KOG0306|consen 411 ----------------------------------------------------------------------TCGYILASKF 420 (888)
T ss_pred ----------------------------------------------------------------------ccccEEEEEe
Confidence 2236778899
Q ss_pred cCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-C
Q 001295 752 TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G 830 (1106)
Q Consensus 752 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-d 830 (1106)
.|.+++++.|..+|.+.+||+... ..+.. ++ .|.+.|.+++.+||++.+++|+ |
T Consensus 421 vpgd~~Iv~G~k~Gel~vfdlaS~----------------------~l~Et-i~--AHdgaIWsi~~~pD~~g~vT~saD 475 (888)
T KOG0306|consen 421 VPGDRYIVLGTKNGELQVFDLASA----------------------SLVET-IR--AHDGAIWSISLSPDNKGFVTGSAD 475 (888)
T ss_pred cCCCceEEEeccCCceEEEEeehh----------------------hhhhh-hh--ccccceeeeeecCCCCceEEecCC
Confidence 999999999999999999987632 21111 12 3999999999999999999999 9
Q ss_pred CeEEEEEcCC-----Ccee--------eeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCe
Q 001295 831 GKISLFNMMT-----FKTM--------ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI 897 (1106)
Q Consensus 831 g~i~vwd~~~-----~~~~--------~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V 897 (1106)
.+|++||..- +... +++. -...|.|+.+|| |+++||++--|.+|+||-+++.+..-.|.||.-+|
T Consensus 476 ktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV 553 (888)
T KOG0306|consen 476 KTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPV 553 (888)
T ss_pred cEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccce
Confidence 9999999741 1111 1222 346799999999 99999999999999999999999999999999999
Q ss_pred eEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCce
Q 001295 898 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE 976 (1106)
Q Consensus 898 ~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~ 976 (1106)
.||..|||++.+++||.|.+|+||-++-|++.+. .-+|. .+|.++.|-|...++.+ +.|+.|+-||..+.+
T Consensus 554 ~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS-----~fAHd---DSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe 625 (888)
T KOG0306|consen 554 LSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKS-----FFAHD---DSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE 625 (888)
T ss_pred eEEeccCCcCeEEeccCCCceEEeccccchhhhh-----hhccc---CceeEEEEcccceeEEEecCcceEEeechhhhh
Confidence 9999999999999999999999999998776442 33444 38999999999888887 799999999999999
Q ss_pred EeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001295 977 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus 977 ~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
++..+. +|...|+|++.+|+|.+++++|.|.+|++|.-..
T Consensus 626 ~iq~L~--~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 626 EIQKLD--GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred hheeec--cchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 999887 9999999999999999999999999999998655
No 12
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-50 Score=397.50 Aligned_cols=364 Identities=18% Similarity=0.247 Sum_probs=299.9
Q ss_pred ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295 407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 486 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 486 (1106)
.+.||.++|.|++|||+|+.||+|+.|.++++||+.+..... +.++|...|.|++|+|||+ .|++|+.||+|++|
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLW 184 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEe
Confidence 578999999999999999999999999999999999976444 7899999999999999999 79999999999999
Q ss_pred eCCCCcee-EEEeccCCCeEEEeccc---cCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEE
Q 001295 487 DATNGAKQ-YIFEGHEAPVYSVCPHH---KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 562 (1106)
Q Consensus 487 d~~~~~~~-~~~~~h~~~v~~~~~~~---~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~ 562 (1106)
|.++|+++ ..|.+|...|++++|.| .+...+|++++.||.|+|||+..+..+..+.+|...|+++.|-.+|
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g----- 259 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG----- 259 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-----
Confidence 99998876 68999999999999865 3566799999999999999999999999999999999999998777
Q ss_pred eeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 563 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 563 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
++++|+.|++|++|+...|.+.+.+++|.+ .|+.++.+-|- . ++++
T Consensus 260 -----------------liySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lalsTdy-~--------------LRtg 305 (480)
T KOG0271|consen 260 -----------------LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLALSTDY-V--------------LRTG 305 (480)
T ss_pred -----------------eEEecCCCceEEEEEccchhHHHhhcccch--heeeeeccchh-h--------------hhcc
Confidence 599999999999999999999999999877 78888876431 1 1122
Q ss_pred chhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEe
Q 001295 643 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 722 (1106)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~ 722 (1106)
+|.+.+ ...+
T Consensus 306 -----------------------af~~t~--------------------------------------------~~~~--- 315 (480)
T KOG0271|consen 306 -----------------------AFDHTG--------------------------------------------RKPK--- 315 (480)
T ss_pred -----------------------cccccc--------------------------------------------ccCC---
Confidence 111111 0000
Q ss_pred cCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccc
Q 001295 723 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 802 (1106)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 802 (1106)
. ....+.. -+.
T Consensus 316 --~---~se~~~~---------------------------------------------------------------Al~- 326 (480)
T KOG0271|consen 316 --S---FSEEQKK---------------------------------------------------------------ALE- 326 (480)
T ss_pred --C---hHHHHHH---------------------------------------------------------------HHH-
Confidence 0 0000000 000
Q ss_pred ccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcC-CCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEE
Q 001295 803 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 880 (1106)
Q Consensus 803 ~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~-~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd 880 (1106)
. +..+.-..+..|++|+ |.++.+|+-. +.+++..+.+|...|+.+.||| |++++|+++-|..|++||
T Consensus 327 ------r----Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~ 395 (480)
T KOG0271|consen 327 ------R----YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWD 395 (480)
T ss_pred ------H----HHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeee
Confidence 0 0001112346788888 6889999865 4457788899999999999999 999999999999999999
Q ss_pred eecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEE
Q 001295 881 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 960 (1106)
Q Consensus 881 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~ 960 (1106)
..+|+.+..|+||-+.|+.++||.|.++|+||+.|.+++||++++.+.
T Consensus 396 g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl-------------------------------- 443 (480)
T KOG0271|consen 396 GRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL-------------------------------- 443 (480)
T ss_pred CCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeee--------------------------------
Confidence 999999999999999999999999999999999999999999988321
Q ss_pred EEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEE
Q 001295 961 VVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1015 (1106)
Q Consensus 961 ~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd 1015 (1106)
...+ .+|...|.++.|+|||..+++|+.|..+++|.
T Consensus 444 -----------------~~DL--pGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 444 -----------------KQDL--PGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred -----------------cccC--CCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 1111 27888999999999999999999999999985
No 13
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.3e-46 Score=394.61 Aligned_cols=637 Identities=15% Similarity=0.164 Sum_probs=433.6
Q ss_pred CcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEe
Q 001295 352 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 431 (1106)
Q Consensus 352 ~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 431 (1106)
.-..++.+|... ++|. -....|.++|+...+.-+ ++..|..+++|++||++|+|+|+|-
T Consensus 39 ~~~gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGE 97 (1080)
T KOG1408|consen 39 NANGLASVPCSG-LCAY-PAGCVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGE 97 (1080)
T ss_pred cCCccccccccc-ceee-ccCcEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEecc
Confidence 345666777665 3443 223578899987665443 5678888999999999999999974
Q ss_pred --CCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEec--CCCcEEEEeCCCCceeEEEeccCCCeEEE
Q 001295 432 --SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG--DDKTIKVWDATNGAKQYIFEGHEAPVYSV 507 (1106)
Q Consensus 432 --~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 507 (1106)
....++||++.....+. +|..|.-.|+|++|+|.++ ++++.| .|-.|.+||++.......-+ -...|..+
T Consensus 98 cG~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asnk-iss~Vsav 171 (1080)
T KOG1408|consen 98 CGRTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASNK-ISSVVSAV 171 (1080)
T ss_pred cCCCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhcccccccc-cceeEEEE
Confidence 66789999999876555 6889999999999999999 777766 46678899987654433322 34678888
Q ss_pred eccccCCceEEEEEecCCeEEEEeCCCCCceeE---eeCC-----------------CC---eeEEEEEecCCCeEE---
Q 001295 508 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD---YEAP-----------------GR---WCTTMAYSADGTRTY--- 561 (1106)
Q Consensus 508 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~-----------------~~---~v~~~~~s~~~~~~~--- 561 (1106)
+| +.+|.++++.+ ...|++|.++...+... +.+. +. .-...+++..|...-
T Consensus 172 ~f--sEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSs 248 (1080)
T KOG1408|consen 172 AF--SEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSS 248 (1080)
T ss_pred EE--ccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeech
Confidence 87 46668898887 67899999876552210 0000 00 002233344333111
Q ss_pred -------EeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEcc----------------------CCCCCC
Q 001295 562 -------QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA----------------------DGGLPA 612 (1106)
Q Consensus 562 -------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----------------------~~~~~~ 612 (1106)
...+.....|++++ ..++++|+.+|.|++|+..+-....++.. ....+.
T Consensus 249 RRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD 326 (1080)
T KOG1408|consen 249 RRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPD 326 (1080)
T ss_pred hhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCc
Confidence 11122233444444 45899999999999999876544433321 111234
Q ss_pred cCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhh--cccccccccCCCCCCCCcCchhhhHhhhhcccccccccccc
Q 001295 613 SPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF--ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM 690 (1106)
Q Consensus 613 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1106)
...+.|++....|.+..+|..++|||+++-.+.-+.. -.|+.-+ .....
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ci-----------------------------W~Ve~ 377 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACI-----------------------------WDVEN 377 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeecccee-----------------------------eeecc
Confidence 4578899999999999999999999998764332211 1122111 11111
Q ss_pred cccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEE-
Q 001295 691 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL- 769 (1106)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i- 769 (1106)
.+.........+.|.+ -++++++|++|++|++.........+.- .++.+-..++. .|++..+
T Consensus 378 ~p~nv~~~~~aclp~~-cF~TCSsD~TIRlW~l~~ctnn~vyrRN--------------ils~~l~ki~y--~d~~~q~~ 440 (1080)
T KOG1408|consen 378 LPCNVHSPTAACLPRG-CFTTCSSDGTIRLWDLAFCTNNQVYRRN--------------ILSANLSKIPY--EDSTQQIM 440 (1080)
T ss_pred ccccccCcccccCCcc-ceeEecCCCcEEEeecccccccceeecc--------------cchhhhhcCcc--ccCchhhh
Confidence 1112223333444433 3899999999999999863332222110 11111111111 1111100
Q ss_pred eeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeec
Q 001295 770 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM 848 (1106)
Q Consensus 770 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~ 848 (1106)
.|.. .-++|-.... . ......+.++++||+|++||+|. .|+|+||++.+.+....+.
T Consensus 441 ~d~~---------------~~~fdka~~s-----~--~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~e 498 (1080)
T KOG1408|consen 441 HDAS---------------AGIFDKALVS-----T--CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFME 498 (1080)
T ss_pred hhcc---------------CCcccccchh-----h--cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhhee
Confidence 0000 0011111000 1 12567799999999999999998 7999999999998888999
Q ss_pred CCCCCeeEEEEecC--CCceEEEeeCCCcEEEEEeec-ceEEEEecCcccCeeEEEEecCC--CEEEEEcCCCcEEEEeC
Q 001295 849 PPPPAATFLAFHPQ--DNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHAL--NVLVSSGADSQLCVWSS 923 (1106)
Q Consensus 849 ~~~~~v~~l~~s~~--d~~~la~g~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~~s~d~--~~l~s~s~Dg~i~vwd~ 923 (1106)
.|..+|.|+.||-. ..++||+++.|..|+|||+.. ..+++++.+|+..|+++.|.-.| ..++++|.|..|.+- .
T Consensus 499 AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr-~ 577 (1080)
T KOG1408|consen 499 AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFR-V 577 (1080)
T ss_pred cccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhee-h
Confidence 99999999999952 357999999999999999864 56789999999999999998877 789999999977543 3
Q ss_pred CCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCceEeeecccC-CCCCCeeEEEECCCCCE
Q 001295 924 DGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPR-ESSAPITHATFSCDSQL 1001 (1106)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~~~~~~~~~-~h~~~v~~l~~s~d~~~ 1001 (1106)
.. +.....+.....+......+..++..|..+++++ +.|+.|+|||+.+++.++.|... +|.+....+...|.|-|
T Consensus 578 ~q--k~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY 655 (1080)
T KOG1408|consen 578 NQ--KASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIY 655 (1080)
T ss_pred hc--cccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccE
Confidence 22 1111112222223333457889999999999999 79999999999999999998852 45678889999999999
Q ss_pred EEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC-----Ccc
Q 001295 1002 VYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE-----GKW 1076 (1106)
Q Consensus 1002 l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~-----~~~ 1076 (1106)
||+.+.|+++.++|+.+|+++.++. || +..|. .+.|.+ |.+.|++.+.||+|+||.++... ...
T Consensus 656 ~atScsdktl~~~Df~sgEcvA~m~-------GH-sE~VT--G~kF~n-DCkHlISvsgDgCIFvW~lp~~mii~m~~r~ 724 (1080)
T KOG1408|consen 656 LATSCSDKTLCFVDFVSGECVAQMT-------GH-SEAVT--GVKFLN-DCKHLISVSGDGCIFVWKLPLTMIIRMVNRN 724 (1080)
T ss_pred EEEeecCCceEEEEeccchhhhhhc-------Cc-chhee--eeeecc-cchhheeecCCceEEEEECchhHhHHHHHHh
Confidence 9999999999999999999999887 54 33355 899999 78999999999999999997643 222
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001295 1077 GVPPPVDNGSTSSMPATPPVGGSGSD 1102 (1106)
Q Consensus 1077 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 1102 (1106)
...+..-.+..-..|.+|.+++.+++
T Consensus 725 ~~lr~rq~~~~~~~pl~p~~p~d~~~ 750 (1080)
T KOG1408|consen 725 GRLRVRQLEKFIAVPLEPDNPNDASC 750 (1080)
T ss_pred hHHHHHhccCCcCCCCCCCCCCCCcc
Confidence 22333444555555666766666654
No 14
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.5e-41 Score=358.34 Aligned_cols=557 Identities=13% Similarity=0.149 Sum_probs=376.9
Q ss_pred eeecc-CCCCcEEEEEecCCCeEEEEEe--ccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEE
Q 001295 344 TRTLN-QGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 420 (1106)
Q Consensus 344 ~~~~~-h~~~v~~~~~sp~g~~llatg~--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 420 (1106)
.+++. |..+++|+|||++|+| +|+|- ....++||++.....+.. +..|+..|+|++|
T Consensus 71 ~hlvnssRk~~t~vAfS~~Gry-vatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaF 130 (1080)
T KOG1408|consen 71 SHLVNSSRKPLTCVAFSQNGRY-VATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAF 130 (1080)
T ss_pred hheecccCcceeEEEEcCCCcE-EEecccCCCccceeeeeccccchhh-------------------hhhccccceeeee
Confidence 34444 8889999999999997 99987 446799999998776653 7899999999999
Q ss_pred ccCCCEEEEEe--CCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEE--
Q 001295 421 SPDGSLFGVAY--SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI-- 496 (1106)
Q Consensus 421 spdg~~las~~--~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-- 496 (1106)
+|.++|+++.+ .|..|.+||++...... -..-...|..++|+.||. |++|.+ ...|++|.++.++....
T Consensus 131 sp~~kyvvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~Kykdpi 203 (1080)
T KOG1408|consen 131 SPGNKYVVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPI 203 (1080)
T ss_pred cCCCcEEEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCc
Confidence 99999999876 45678899887543332 122356899999999999 788887 47899999876541110
Q ss_pred -----------E------------------------ecc-----------------CCCeEEEeccccCCceEEEEEecC
Q 001295 497 -----------F------------------------EGH-----------------EAPVYSVCPHHKENIQFIFSTALD 524 (1106)
Q Consensus 497 -----------~------------------------~~h-----------------~~~v~~~~~~~~~~~~~l~s~~~d 524 (1106)
+ .|| +....|++++ .++|++|+.+
T Consensus 204 Pl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs----~r~I~cgCa~ 279 (1080)
T KOG1408|consen 204 PLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS----SRLIACGCAK 279 (1080)
T ss_pred cccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee----cceEEEeecc
Confidence 0 011 0112344432 2689999999
Q ss_pred CeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeecc---ceeEEEEcCCCCEEEEEECCCeEEEEECCCccee
Q 001295 525 GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR---SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL 601 (1106)
Q Consensus 525 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 601 (1106)
|.|++|+..+.....++.....--..++--.+-..++.+.... ....+.|++....+.+...|..+++||++.-..+
T Consensus 280 g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kv 359 (1080)
T KOG1408|consen 280 GMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKV 359 (1080)
T ss_pred ceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccc
Confidence 9999998877555444332211000000000011111111111 2334678888899999999999999999874332
Q ss_pred EEE-ccCCCCCCcCeEEEccC-----------CCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCc
Q 001295 602 TSI-DADGGLPASPRIRFNKD-----------GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISP 669 (1106)
Q Consensus 602 ~~~-~~~~~~~~v~~v~~s~~-----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (1106)
... ..-.|...|+.+.--|- ...+++++.|++||+|++..+.. -..+......
T Consensus 360 gk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctn-n~vyrRNils-------------- 424 (1080)
T KOG1408|consen 360 GKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTN-NQVYRRNILS-------------- 424 (1080)
T ss_pred cceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccc-cceeecccch--------------
Confidence 211 11112223444433330 23588999999999999875310 0000000000
Q ss_pred hhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEE
Q 001295 670 ISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRL 749 (1106)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 749 (1106)
.+.+-.-..|++..+..........+ ...........+.++
T Consensus 425 ------------------------------------~~l~ki~y~d~~~q~~~d~~~~~fdk---a~~s~~d~r~G~R~~ 465 (1080)
T KOG1408|consen 425 ------------------------------------ANLSKIPYEDSTQQIMHDASAGIFDK---ALVSTCDSRFGFRAL 465 (1080)
T ss_pred ------------------------------------hhhhcCccccCchhhhhhccCCcccc---cchhhcCcccceEEE
Confidence 00000000001100000000000000 000001245678999
Q ss_pred EEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEec---CCCEEE
Q 001295 750 IFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK---NDSYVM 826 (1106)
Q Consensus 750 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~---~~~~l~ 826 (1106)
+++|+|++|++|..-|.++||+++.-.. .. .+ ..|...|.|+.||. ..++||
T Consensus 466 ~vSp~gqhLAsGDr~GnlrVy~Lq~l~~---------------------~~--~~--eAHesEilcLeyS~p~~~~kLLA 520 (1080)
T KOG1408|consen 466 AVSPDGQHLASGDRGGNLRVYDLQELEY---------------------TC--FM--EAHESEILCLEYSFPVLTNKLLA 520 (1080)
T ss_pred EECCCcceecccCccCceEEEEehhhhh---------------------hh--he--ecccceeEEEeecCchhhhHhhh
Confidence 9999999999999999999999873211 00 11 23999999999985 357899
Q ss_pred EEe-CCeEEEEEcC-CCceeeeecCCCCCeeEEEEecCCC--ceEEEeeCCCcEEEEEeecceEEEEecCc-----ccCe
Q 001295 827 SAS-GGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDN--NIIAIGMDDSSIQIYNVRVDEVKSKLKGH-----SKRI 897 (1106)
Q Consensus 827 ~~s-dg~i~vwd~~-~~~~~~~~~~~~~~v~~l~~s~~d~--~~la~g~~dg~v~iwd~~~~~~~~~l~~h-----~~~V 897 (1106)
+++ |.-|+|||+. +..+++++.+|...|+++.|.. .+ ..+++++.|..|.+--.+...-...+..| ...+
T Consensus 521 SasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~-~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTl 599 (1080)
T KOG1408|consen 521 SASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC-NGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTL 599 (1080)
T ss_pred hccCCceEEEEecccccchhhhhcccccceeEEEEee-cCCceEEEeccCchhhheehhccccCceeccccccccccceE
Confidence 999 8899999997 5667788999999999999987 44 56778888988765433321111122111 2458
Q ss_pred eEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCce
Q 001295 898 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE 976 (1106)
Q Consensus 898 ~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~ 976 (1106)
+.++..|..+++++++.|+.|+||+++++++ .+.+++.....+....+...|.|.|+|+ +.|+++.++|.-+++
T Consensus 600 YDm~Vdp~~k~v~t~cQDrnirif~i~sgKq-----~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgE 674 (1080)
T KOG1408|consen 600 YDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ-----VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGE 674 (1080)
T ss_pred EEeeeCCCcceEEEEecccceEEEeccccce-----eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccch
Confidence 8999999999999999999999999999875 3344444444467889999999999999 699999999999999
Q ss_pred EeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001295 977 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus 977 ~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
|+.... +|+..|+.+.|++|-+.|++.+.||.|.||.+..
T Consensus 675 cvA~m~--GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 675 CVAQMT--GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hhhhhc--CcchheeeeeecccchhheeecCCceEEEEECch
Confidence 999987 9999999999999999999999999999999864
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.6e-41 Score=339.46 Aligned_cols=352 Identities=19% Similarity=0.347 Sum_probs=281.7
Q ss_pred CCCcceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccc-c----CCCC
Q 001295 338 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAAL-V----KDPG 412 (1106)
Q Consensus 338 ~~~~~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~----~~h~ 412 (1106)
.+|......++|+.+|.+++|+|-..-++|+|+.|-+.++|++......... ...+...+ . ....
T Consensus 166 ~I~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~----------q~~lrh~~~~~~~s~~~n 235 (524)
T KOG0273|consen 166 EIPSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGST----------QLVLRHCIREGGKSVPSN 235 (524)
T ss_pred cccccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccch----------hhhhhhhhhhhcccCCcc
Confidence 4577777888899999999999977767999999999999998741111000 00000000 1 1123
Q ss_pred cCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCc
Q 001295 413 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA 492 (1106)
Q Consensus 413 ~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 492 (1106)
..|++++|+.+|..||+|+.||.++||+...+. +. +|..|.++|.++.|+.+|. +|++++.|+++.+||..+|.
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~ 309 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGT 309 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCce
Confidence 579999999999999999999999999988643 22 6888999999999999999 89999999999999999999
Q ss_pred eeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEE
Q 001295 493 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 572 (1106)
Q Consensus 493 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~ 572 (1106)
..+.+.-|..+-..+.|-.. ..
T Consensus 310 ~~q~f~~~s~~~lDVdW~~~---~~------------------------------------------------------- 331 (524)
T KOG0273|consen 310 VKQQFEFHSAPALDVDWQSN---DE------------------------------------------------------- 331 (524)
T ss_pred EEEeeeeccCCccceEEecC---ce-------------------------------------------------------
Confidence 99988888777555554211 12
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhccc
Q 001295 573 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 652 (1106)
Q Consensus 573 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 652 (1106)
+++.+.|+.|+++.+...+++.++.+| ...|.++.|.|.|.+|+++++|++++||+.... .....+.
T Consensus 332 --------F~ts~td~~i~V~kv~~~~P~~t~~GH--~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-~~~~~l~-- 398 (524)
T KOG0273|consen 332 --------FATSSTDGCIHVCKVGEDRPVKTFIGH--HGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS-NSVHDLQ-- 398 (524)
T ss_pred --------EeecCCCceEEEEEecCCCcceeeecc--cCceEEEEECCCCceEEEecCCCeeEeeecCCC-cchhhhh--
Confidence 566666667777777777788888875 558999999999999999999999999987655 3333222
Q ss_pred ccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccc
Q 001295 653 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC 732 (1106)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~ 732 (1106)
T Consensus 399 -------------------------------------------------------------------------------- 398 (524)
T KOG0273|consen 399 -------------------------------------------------------------------------------- 398 (524)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCC
Q 001295 733 RSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEA 812 (1106)
Q Consensus 733 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 812 (1106)
+|...|..+.++|.|... |++
T Consensus 399 --------~Hskei~t~~wsp~g~v~---------------------------------~n~------------------ 419 (524)
T KOG0273|consen 399 --------AHSKEIYTIKWSPTGPVT---------------------------------SNP------------------ 419 (524)
T ss_pred --------hhccceeeEeecCCCCcc---------------------------------CCC------------------
Confidence 367778888888887510 000
Q ss_pred eeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEec
Q 001295 813 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 891 (1106)
Q Consensus 813 v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~ 891 (1106)
..+..+++++ |++|++||+..+.++.+|..|..+|.+++||| +++++|+|+.||.|.||+.+++++++...
T Consensus 420 -------~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~ylAsGs~dg~V~iws~~~~~l~~s~~ 491 (524)
T KOG0273|consen 420 -------NMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYLASGSLDGCVHIWSTKTGKLVKSYQ 491 (524)
T ss_pred -------cCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEEEecCCCCeeEeccccchheeEeec
Confidence 1344566666 99999999999999999999999999999999 99999999999999999999999999987
Q ss_pred CcccCeeEEEEecCCCEEEEEcCCCcEEEEeCC
Q 001295 892 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 924 (1106)
Q Consensus 892 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~ 924 (1106)
+ .+.|..|+|+.+|..|..+-.|+.+.+-|+.
T Consensus 492 ~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 492 G-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred C-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 5 4559999999999999999999999998874
No 16
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=6e-38 Score=339.01 Aligned_cols=588 Identities=15% Similarity=0.154 Sum_probs=432.9
Q ss_pred EEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCCCe
Q 001295 356 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 435 (1106)
Q Consensus 356 ~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 435 (1106)
..|..-|+.++++.+.+.+..+||.+.-..+.. -..+...|.|++=..+ +..+++ ...
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~--~vy~A~-g~~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKD--YVYVAS-GNK 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCc--eEEEec-CcE
Confidence 666677777889999999999999987666542 2466778999886544 444443 244
Q ss_pred EEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC-ce----eEEEeccCCCeEEEecc
Q 001295 436 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AK----QYIFEGHEAPVYSVCPH 510 (1106)
Q Consensus 436 v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~----~~~~~~h~~~v~~~~~~ 510 (1106)
|.+|.. |+.++. .+.+|.+.|.-+.- -|. .++++..++.+.||+..++ .. +..++...+.|+++. |
T Consensus 97 i~~~~r--gk~i~~--~~~~~~a~v~~l~~--fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYAR--GKHIRH--TTLLHGAKVHLLLP--FGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEEc--cceEEE--EeccccceEEEEee--ecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 666653 443332 46678777877663 466 6899999999999998874 22 122233334488876 4
Q ss_pred ccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeE
Q 001295 511 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI 590 (1106)
Q Consensus 511 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 590 (1106)
|+.--+.++.|+.+|.+.+|++++++.+.++......|+++.-+|-=. .++.|..+|+|
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLD---------------------VVaiG~~~G~V 226 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALD---------------------VVAIGLENGTV 226 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcce---------------------EEEEeccCceE
Confidence 555556799999999999999999999999998888777776655433 58889999999
Q ss_pred EEEECCCcceeEEEccCCCCCCcCeEEEccCCCE-EEEEeCCCcEEEEEccCCchhhhhhc-ccccccccCCCCCCCCcC
Q 001295 591 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL-LAVSTNDNGIKILATSDGIRLLRTFE-NLAYDASRTSENSKPTIS 668 (1106)
Q Consensus 591 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 668 (1106)
.++|++.++.+.+++.. .+.|++++|.-||.. +++|+..|.+.+||++.. +.....+ .|...+
T Consensus 227 iifNlK~dkil~sFk~d--~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k-kl~~v~~nah~~sv------------ 291 (910)
T KOG1539|consen 227 IIFNLKFDKILMSFKQD--WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK-KLINVTRNAHYGSV------------ 291 (910)
T ss_pred EEEEcccCcEEEEEEcc--ccceeEEEeccCCCeeEEeccCCceEEEEEcCCC-eeeeeeeccccCCc------------
Confidence 99999999999999866 347999999999875 556666799999999876 3333333 332211
Q ss_pred chhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEE
Q 001295 669 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR 748 (1106)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~ 748 (1106)
....+.+....+++++.|+.+++|-.+.+....+ .++.. .+|..+..+
T Consensus 292 -----------------------------~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR--~LR~R-~GHs~Pp~~ 339 (910)
T KOG1539|consen 292 -----------------------------TGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPR--LLRSR-GGHSAPPSC 339 (910)
T ss_pred -----------------------------ccceecCCCceEeeccCCCceeEEEeeCCCCcch--heeec-cCCCCCchh
Confidence 1223455677889999999999998885444322 22222 579999999
Q ss_pred EEEc-CCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCC----C
Q 001295 749 LIFT-NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND----S 823 (1106)
Q Consensus 749 ~~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~----~ 823 (1106)
+.|- .+|..+++++.|++++.+++....++..-.. +.....+..+.........-.+|..+++.... .
T Consensus 340 irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-------~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~ 412 (910)
T KOG1539|consen 340 IRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ-------LHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWD 412 (910)
T ss_pred eeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc-------cccccccccccccchhhhcCCcceeeecccchhhhhc
Confidence 9997 7899999999999999888765443222111 11111111111000000023456666665321 1
Q ss_pred EEEEEe--CCeEEEEEcCCCce-eeeec-----CCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEe---cC
Q 001295 824 YVMSAS--GGKISLFNMMTFKT-MATFM-----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL---KG 892 (1106)
Q Consensus 824 ~l~~~s--dg~i~vwd~~~~~~-~~~~~-----~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l---~~ 892 (1106)
-++++. +...+.|++.+... ...+. .....+++++.++ .|++.+.|+..|.|-+|++++|-....+ ..
T Consensus 413 Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~a 491 (910)
T KOG1539|consen 413 NVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPA 491 (910)
T ss_pred ceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCcc
Confidence 234444 57799999987554 23332 2346799999999 9999999999999999999999998888 58
Q ss_pred cccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEe
Q 001295 893 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE 971 (1106)
Q Consensus 893 h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d 971 (1106)
|..+|++|+...-++.++|++.||-+++||+.+... +.... ....+.++.++-....+++ ..|-.|+++|
T Consensus 492 h~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l-----~~~l~----l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD 562 (910)
T KOG1539|consen 492 HKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL-----KKSLR----LGSSITGIVYHRVSDLLAIALDDFSIRVVD 562 (910)
T ss_pred ccCceeEEEecCCCceEEEccCcceEEEEecCCcce-----eeeec----cCCCcceeeeeehhhhhhhhcCceeEEEEE
Confidence 999999999988889999999999999999988442 11111 1136788888888888888 6888999999
Q ss_pred cCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCC
Q 001295 972 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1051 (1106)
Q Consensus 972 ~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d 1051 (1106)
..+.+.++.+. +|+..|++++|||||++|++++.|++|++||+.++.++..+. .. .-++.+.|+| .
T Consensus 563 ~~t~kvvR~f~--gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~----vd-------~~~~sls~SP-n 628 (910)
T KOG1539|consen 563 VVTRKVVREFW--GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL----VD-------SPCTSLSFSP-N 628 (910)
T ss_pred chhhhhhHHhh--ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe----cC-------CcceeeEECC-C
Confidence 99999999998 999999999999999999999999999999999999998776 11 1234799999 6
Q ss_pred CCEEEEEeCC-CcEEEEeecCCC
Q 001295 1052 PNEFALGLSD-GGVHVFEPLESE 1073 (1106)
Q Consensus 1052 ~~~l~t~~~D-g~v~vW~~~~~~ 1073 (1106)
|++|+|...| .-|++|--..--
T Consensus 629 gD~LAT~Hvd~~gIylWsNkslF 651 (910)
T KOG1539|consen 629 GDFLATVHVDQNGIYLWSNKSLF 651 (910)
T ss_pred CCEEEEEEecCceEEEEEchhHh
Confidence 9999999999 679999865444
No 17
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.4e-41 Score=339.48 Aligned_cols=285 Identities=18% Similarity=0.260 Sum_probs=260.1
Q ss_pred cccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCC
Q 001295 455 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 534 (1106)
Q Consensus 455 ~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 534 (1106)
|-+.+|..+.|+.|++ .|+||+.+|.++||+..+...+++|.||...|.++.|+|..++..++||+.||++++|++.+
T Consensus 173 gd~rPis~~~fS~ds~--~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSK--HLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred cCCCcceeeEeecCCC--eEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 4567899999999999 89999999999999999999999999999999999999986557899999999999999999
Q ss_pred CCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcC
Q 001295 535 LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASP 614 (1106)
Q Consensus 535 ~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~ 614 (1106)
...+..+.+|...|..++|+|+|+ +|++++.|.+-++||+.++..+....+| ...|.
T Consensus 251 e~~l~~l~gH~~RVs~VafHPsG~---------------------~L~TasfD~tWRlWD~~tk~ElL~QEGH--s~~v~ 307 (459)
T KOG0272|consen 251 ETPLQDLEGHLARVSRVAFHPSGK---------------------FLGTASFDSTWRLWDLETKSELLLQEGH--SKGVF 307 (459)
T ss_pred CcchhhhhcchhhheeeeecCCCc---------------------eeeecccccchhhcccccchhhHhhccc--ccccc
Confidence 888889998888777777666665 8999999999999999999988777766 55899
Q ss_pred eEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccC
Q 001295 615 RIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIP 694 (1106)
Q Consensus 615 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1106)
+++|.+||.++++|+.|..-+|||++++. ++-.
T Consensus 308 ~iaf~~DGSL~~tGGlD~~~RvWDlRtgr-~im~---------------------------------------------- 340 (459)
T KOG0272|consen 308 SIAFQPDGSLAATGGLDSLGRVWDLRTGR-CIMF---------------------------------------------- 340 (459)
T ss_pred eeEecCCCceeeccCccchhheeecccCc-EEEE----------------------------------------------
Confidence 99999999999999999999999998881 1110
Q ss_pred CCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccc
Q 001295 695 GMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR 774 (1106)
Q Consensus 695 ~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 774 (1106)
T Consensus 341 -------------------------------------------------------------------------------- 340 (459)
T KOG0272|consen 341 -------------------------------------------------------------------------------- 340 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCC
Q 001295 775 TERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPA 853 (1106)
Q Consensus 775 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~ 853 (1106)
+. +|...|.+++|+|+|..||+|+ |++++|||++..+.+.++.+|.+-
T Consensus 341 -----------------------------L~--gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl 389 (459)
T KOG0272|consen 341 -----------------------------LA--GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL 389 (459)
T ss_pred -----------------------------ec--ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch
Confidence 11 2788889999999999999998 999999999998999999999999
Q ss_pred eeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEe
Q 001295 854 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922 (1106)
Q Consensus 854 v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd 922 (1106)
|+.+.|+|+.|.+|++++.|++++||...++.+++.+.||.+.|.++++++|+.+++|++.|+++++|.
T Consensus 390 VS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 390 VSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999998899999999999999999999999999999999999999999999999999999999995
No 18
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7e-41 Score=362.22 Aligned_cols=276 Identities=18% Similarity=0.275 Sum_probs=238.3
Q ss_pred CCCCCcceeeecc-CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEE---eeeeee---------ccCcCCcc
Q 001295 336 PEDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL---RNFKVW---------DLGACSMP 402 (1106)
Q Consensus 336 ~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~---~~~~~~---------d~~~~~~~ 402 (1106)
.+.+|.-+.+++. ....++|..||+|++ ++|.|-.|..|++|.+...+.... ..+..- |+......
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~ 441 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS 441 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence 3566888888887 567899999999999 699999999999999985432110 000000 11111222
Q ss_pred ccccccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCc
Q 001295 403 LQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT 482 (1106)
Q Consensus 403 ~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~ 482 (1106)
.....+.||+++|..+.|+|+.++|++++.|++|++|.+.+..++- .+.||..+|+++.|+|.|- +|||+|.|++
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~t 516 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQT 516 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCce
Confidence 3334589999999999999999999999999999999999987655 6789999999999999998 8999999999
Q ss_pred EEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEE
Q 001295 483 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 562 (1106)
Q Consensus 483 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~ 562 (1106)
.++|.....++++.+.||.+.|.|+.|+|+. +++++||.|.+||+||+.++..++.+.+|..+|.+++|+|+|+
T Consensus 517 ArLWs~d~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr---- 590 (707)
T KOG0263|consen 517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGR---- 590 (707)
T ss_pred eeeeecccCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCc----
Confidence 9999999999999999999999999998766 7999999999999999999999999998888888888888776
Q ss_pred eeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 563 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 563 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
+|++|++||.|.+||+.+++.+..+.+| .+.|.++.|+.||..||+|+.|++|++||+...
T Consensus 591 -----------------~LaSg~ed~~I~iWDl~~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 591 -----------------YLASGDEDGLIKIWDLANGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred -----------------eEeecccCCcEEEEEcCCCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 8999999999999999999999999888 568999999999999999999999999998654
No 19
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1e-40 Score=333.34 Aligned_cols=284 Identities=19% Similarity=0.300 Sum_probs=258.8
Q ss_pred ccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC--C
Q 001295 347 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD--G 424 (1106)
Q Consensus 347 ~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd--g 424 (1106)
++.+.+|..+.||+|++ +||||+-+|.++||+..+...+. +|.||...|.++.|+|. +
T Consensus 172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~-------------------~l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQ-------------------TLRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeE-------------------EEeccccceeeEEEccCCCc
Confidence 35678999999999999 59999999999999999987665 48999999999999995 6
Q ss_pred CEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCe
Q 001295 425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 504 (1106)
Q Consensus 425 ~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 504 (1106)
..||+|+.||+|++|++.+...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++||++++..+....||...|
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence 799999999999999999876655 6899999999999999999 89999999999999999999999999999999
Q ss_pred EEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEE
Q 001295 505 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 584 (1106)
Q Consensus 505 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 584 (1106)
.+++|++ ||.+++|||.|..-++||++++.++..+.+|.+.|.++.|+|+|- .+++|
T Consensus 307 ~~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy---------------------~lATg 363 (459)
T KOG0272|consen 307 FSIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGY---------------------HLATG 363 (459)
T ss_pred ceeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCce---------------------EEeec
Confidence 9999865 558999999999999999999999999999999888888888775 79999
Q ss_pred ECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCC
Q 001295 585 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 663 (1106)
Q Consensus 585 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (1106)
+.|++++|||++..+.+.++..| ...|+.|.|+| .|.+|++++.|++++||...+. .+++.+.
T Consensus 364 s~Dnt~kVWDLR~r~~ly~ipAH--~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~-~~~ksLa------------- 427 (459)
T KOG0272|consen 364 SSDNTCKVWDLRMRSELYTIPAH--SNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW-SPLKSLA------------- 427 (459)
T ss_pred CCCCcEEEeeecccccceecccc--cchhhheEecccCCeEEEEcccCcceeeecCCCc-ccchhhc-------------
Confidence 99999999999999999998877 45799999999 8999999999999999988776 5555543
Q ss_pred CCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccc
Q 001295 664 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA 743 (1106)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 743 (1106)
+|.
T Consensus 428 -----------------------------------------------------------------------------GHe 430 (459)
T KOG0272|consen 428 -----------------------------------------------------------------------------GHE 430 (459)
T ss_pred -----------------------------------------------------------------------------CCc
Confidence 488
Q ss_pred cceEEEEEcCCCceEEEeecCceEEEee
Q 001295 744 TKISRLIFTNSGNAILALASNAIHLLWK 771 (1106)
Q Consensus 744 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~ 771 (1106)
+.|.++.+++|+..+++++.|.++++|.
T Consensus 431 ~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 431 GKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cceEEEEeccCCceEEEeccCceeeecc
Confidence 8999999999999999999999999994
No 20
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3.9e-37 Score=325.96 Aligned_cols=597 Identities=15% Similarity=0.172 Sum_probs=404.3
Q ss_pred CCCCCCCCcceeeecc-CCCCcEEEEEecCCC---eEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCcccccccc
Q 001295 333 FSTPEDLPKTVTRTLN-QGSSPMSMDFHPVQQ---TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALV 408 (1106)
Q Consensus 333 ~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~---~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 408 (1106)
+...+.....+..++. |..+|+|+.|-|+.+ + +++|+.||.|++|.+......... .+
T Consensus 36 Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~-~vsG~sD~~v~lW~l~~~~~~~i~-----------------~~ 97 (764)
T KOG1063|consen 36 IAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAE-MVSGDSDGRVILWKLRDEYLIKIY-----------------TI 97 (764)
T ss_pred EEEeCcccceeEEeccCCccceEEEEEcccccccce-EEEccCCCcEEEEEEeehheEEEE-----------------ee
Confidence 3333444444555555 999999999999887 5 889999999999999843333221 25
Q ss_pred CCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeee--eccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295 409 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLE--IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 486 (1106)
Q Consensus 409 ~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~--l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 486 (1106)
.+|...+.| ++.......+...|+++.+||.+..+ +..... +..-..--.|+++.++.+..+++.|+.+..|.++
T Consensus 98 ~g~~~~~~c--v~a~~~~~~~~~ad~~v~vw~~~~~e-~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~ 174 (764)
T KOG1063|consen 98 QGHCKECVC--VVARSSVMTCKAADGTVSVWDKQQDE-VFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLY 174 (764)
T ss_pred cCcceeEEE--EEeeeeEEEeeccCceEEEeecCCCc-eeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEe
Confidence 566555554 44333333333689999999996544 111111 2222223356777786665578888889999998
Q ss_pred eCCCC--ceeEEEeccCCCeEEEeccccCC-ceEEEEEecCCeEEEEeCCCCCceeEe------e-CCCCeeEEEE----
Q 001295 487 DATNG--AKQYIFEGHEAPVYSVCPHHKEN-IQFIFSTALDGKIKAWLYDNLGSRVDY------E-APGRWCTTMA---- 552 (1106)
Q Consensus 487 d~~~~--~~~~~~~~h~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~------~-~~~~~v~~~~---- 552 (1106)
.-.++ +.+..+.||.+.|.+++|..... .-+|+++|.|..||+|.+......... . ....++..+.
T Consensus 175 s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~ 254 (764)
T KOG1063|consen 175 SSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQ 254 (764)
T ss_pred ccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEE
Confidence 75544 45678999999999999876544 568999999999999987543311100 0 0001111110
Q ss_pred EecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcc--eeEEE--cc-CCCCCCcCeEEEccCCCEEEE
Q 001295 553 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ--LLTSI--DA-DGGLPASPRIRFNKDGCLLAV 627 (1106)
Q Consensus 553 ~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~--~~-~~~~~~v~~v~~s~~~~~l~~ 627 (1106)
+--.-..++.||.+ -+..+.|+|.+..|++++.|.++.+|...+.. -+... .. .+.........|+|++..+++
T Consensus 255 ~~is~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~ 333 (764)
T KOG1063|consen 255 YRISFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIA 333 (764)
T ss_pred EEEehhhhhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEE
Confidence 10001122334443 67778888888889999999999999876652 22222 11 122335778999999999999
Q ss_pred EeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCC
Q 001295 628 STNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK 707 (1106)
Q Consensus 628 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (1106)
-+..|..++|...+..
T Consensus 334 ~g~~Gg~hlWkt~d~~---------------------------------------------------------------- 349 (764)
T KOG1063|consen 334 HGRTGGFHLWKTKDKT---------------------------------------------------------------- 349 (764)
T ss_pred ecccCcEEEEeccCcc----------------------------------------------------------------
Confidence 9999999999732220
Q ss_pred ccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCcccccc
Q 001295 708 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV 787 (1106)
Q Consensus 708 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 787 (1106)
.|.... -..+|...|.+++|.|.|.++++++.|.+-+++-.-..+.
T Consensus 350 ------------~w~~~~------------~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~---------- 395 (764)
T KOG1063|consen 350 ------------FWTQEP------------VISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQ---------- 395 (764)
T ss_pred ------------ceeecc------------ccccccccceeeeecCCCCEEEEeccccceeeeccccccc----------
Confidence 111110 0035889999999999999999999999999875321000
Q ss_pred CccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEeC-CeEEEEEcC---------------------------
Q 001295 788 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG-GKISLFNMM--------------------------- 839 (1106)
Q Consensus 788 ~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sd-g~i~vwd~~--------------------------- 839 (1106)
-|... . +.+-|...++|++|-+....+++|.| ..+|+|+..
T Consensus 396 ---~wHEi-----a---RPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~V 464 (764)
T KOG1063|consen 396 ---EWHEI-----A---RPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANV 464 (764)
T ss_pred ---ceeee-----c---ccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccc
Confidence 02110 0 11228888899998876666677765 567888731
Q ss_pred ----------------CCce---------------------------------eeeecCCCCCeeEEEEecCCCceEEEe
Q 001295 840 ----------------TFKT---------------------------------MATFMPPPPAATFLAFHPQDNNIIAIG 870 (1106)
Q Consensus 840 ----------------~~~~---------------------------------~~~~~~~~~~v~~l~~s~~d~~~la~g 870 (1106)
+|.. ++.+-||..+|.+++.+| +++++|++
T Consensus 465 paLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASa 543 (764)
T KOG1063|consen 465 PALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASA 543 (764)
T ss_pred ccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeeh
Confidence 0000 011246778899999999 99999999
Q ss_pred eCCC-----cEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCC
Q 001295 871 MDDS-----SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQ 945 (1106)
Q Consensus 871 ~~dg-----~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 945 (1106)
+... .|++|+..+...+..+.+|+-.|+.|+|||||++|++++.|+++.+|+.......... ....+.|. .
T Consensus 544 CKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~-fa~~k~Ht---R 619 (764)
T KOG1063|consen 544 CKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFR-FACLKAHT---R 619 (764)
T ss_pred hhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhh-hccccccc---e
Confidence 8654 6899999999888999999999999999999999999999999999998654433222 12233443 3
Q ss_pred CCceEEEcCCCcEEEE-EeCCeEEEEecCCc--eEeeecccCCCCCCeeEEEECC-----CCCEEEEEEcCCeEEEEEcC
Q 001295 946 SDTRVQFHQDQIHFLV-VHETQLAIFETTKL--ECVKQWVPRESSAPITHATFSC-----DSQLVYACFLDATVCVFSAA 1017 (1106)
Q Consensus 946 ~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~--~~~~~~~~~~h~~~v~~l~~s~-----d~~~l~t~s~Dg~i~vwd~~ 1017 (1106)
-|..+.|+|+++++++ +.|++|.+|..... +.+..+....++.+|+.+++.| .+..++.|-+.|.|.+|...
T Consensus 620 IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 620 IIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred EEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 7889999999999999 68999999999888 6666655567899999999987 23378899999999999965
Q ss_pred C-------ceeEEeeCCCcccCCCCCCCCccceEEEEeCCC---------CCEEEEEeCCCcEEEEeec
Q 001295 1018 N-------LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE---------PNEFALGLSDGGVHVFEPL 1070 (1106)
Q Consensus 1018 ~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d---------~~~l~t~~~Dg~v~vW~~~ 1070 (1106)
. +............+ | ...|. .+.|.|.. ...|++|++|.+++++++.
T Consensus 700 ~~~~~~~~~~~~~~~~l~~~~~--~-~~aV~--rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 700 REHRQVTVGTFNLDTRLCATIG--P-DSAVN--RLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cccccccceeeeeccccccccC--h-HHhhh--eeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 1 11111111111111 2 22255 78888641 1237999999999999875
No 21
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.9e-38 Score=301.89 Aligned_cols=296 Identities=20% Similarity=0.305 Sum_probs=259.9
Q ss_pred Ccceeeecc-CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEE
Q 001295 340 PKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 418 (1106)
Q Consensus 340 ~~~~~~~~~-h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 418 (1106)
..+..++|. |...|.++.|++|.++ +++++.||.+.|||.-+..+.+. +.-....|..+
T Consensus 44 ~~~~rr~LkGH~~Ki~~~~ws~Dsr~-ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtC 103 (343)
T KOG0286|consen 44 QMRTRRTLKGHLNKIYAMDWSTDSRR-IVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTC 103 (343)
T ss_pred eeeeEEEecccccceeeeEecCCcCe-EEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEE
Confidence 334456666 9999999999999996 99999999999999988776653 34456799999
Q ss_pred EEccCCCEEEEEeCCCeEEEEEccCC--c-eeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeE
Q 001295 419 IWSPDGSLFGVAYSRHIVQIYSYHGG--D-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 495 (1106)
Q Consensus 419 ~~spdg~~las~~~d~~v~iwd~~~~--~-~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 495 (1106)
+|+|.|+++|.|+-|+...||++.+. + .++....+.+|.+.+.|+.|.+|+. |+|++.|.+..+||+++|+.+.
T Consensus 104 A~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~ 180 (343)
T KOG0286|consen 104 AYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQ 180 (343)
T ss_pred EECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEE
Confidence 99999999999999999999999865 2 1233446889999999999998775 9999999999999999999999
Q ss_pred EEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEc
Q 001295 496 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 575 (1106)
Q Consensus 496 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~ 575 (1106)
.|.||.+.|.++.+.|. +++.+++|+-|+..++||++.+...+.+.+|...|.++.|.|+|.
T Consensus 181 ~f~GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~----------------- 242 (343)
T KOG0286|consen 181 VFHGHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD----------------- 242 (343)
T ss_pred EecCCcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCC-----------------
Confidence 99999999999999875 668999999999999999999999999999999888888877775
Q ss_pred CCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccc
Q 001295 576 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYD 655 (1106)
Q Consensus 576 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 655 (1106)
-+++|++|++.++||++..+.+..+........|++++||..|++|++|..|.++.+||.-.+ +....+
T Consensus 243 ----afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~-e~vg~L------ 311 (343)
T KOG0286|consen 243 ----AFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG-ERVGVL------ 311 (343)
T ss_pred ----eeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc-ceEEEe------
Confidence 699999999999999999999999987777788999999999999999999999999997655 111111
Q ss_pred cccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceec
Q 001295 656 ASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSL 735 (1106)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~ 735 (1106)
T Consensus 312 -------------------------------------------------------------------------------- 311 (343)
T KOG0286|consen 312 -------------------------------------------------------------------------------- 311 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCccccccceEEEEEcCCCceEEEeecCceEEEee
Q 001295 736 RLPENLRATKISRLIFTNSGNAILALASNAIHLLWK 771 (1106)
Q Consensus 736 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~ 771 (1106)
.+|.++|.++..+|||..+++++.|..++||.
T Consensus 312 ----~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 312 ----AGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ----eccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 24899999999999999999999999999993
No 22
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5e-37 Score=320.54 Aligned_cols=464 Identities=17% Similarity=0.265 Sum_probs=352.8
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 428 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 428 (1106)
|.+.|.++.|+|...+ +.++-..|.|.|||.++...+.. | .-..-+|.+..|-+..++++
T Consensus 12 rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVks--f-----------------eV~~~PvRa~kfiaRknWiv 71 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKS--F-----------------EVSEVPVRAAKFIARKNWIV 71 (794)
T ss_pred cCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeee--e-----------------eecccchhhheeeeccceEE
Confidence 8899999999999997 66678899999999999877754 2 22345899999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC-ceeEEEeccCCCeEEE
Q 001295 429 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVYSV 507 (1106)
Q Consensus 429 s~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~ 507 (1106)
+|+.|..|+||+..+++.++ .|.+|.+.|.+++.+|... +++|+|+|-+|++||.+.+ .+.++|.||...|.++
T Consensus 72 ~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv 146 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV 146 (794)
T ss_pred EecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence 99999999999999998776 7999999999999999999 8999999999999999864 6788999999999999
Q ss_pred eccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECC
Q 001295 508 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 587 (1106)
Q Consensus 508 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 587 (1106)
+|.|..+ +.+++++.|++|++|.+....+..++.+|...|.++.+.+.|. ..++++|+.|
T Consensus 147 ~fnPkD~-ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gd-------------------kpylIsgaDD 206 (794)
T KOG0276|consen 147 AFNPKDP-NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGD-------------------KPYLISGADD 206 (794)
T ss_pred EecCCCc-cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCC-------------------cceEEecCCC
Confidence 9988654 7999999999999999999999999999999999999887764 3579999999
Q ss_pred CeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCc
Q 001295 588 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI 667 (1106)
Q Consensus 588 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (1106)
.+|+|||..+..+++++.+|.+ .|..+.|+|.-.++++|+.||+++||+..+- +....+.
T Consensus 207 ~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn----------------- 266 (794)
T KOG0276|consen 207 LTIKVWDYQTKSCVQTLEGHTN--NVSFVFFHPELPIIISGSEDGTVRIWNSKTY-KLEKTLN----------------- 266 (794)
T ss_pred ceEEEeecchHHHHHHhhcccc--cceEEEecCCCcEEEEecCCccEEEecCcce-ehhhhhh-----------------
Confidence 9999999999999999998855 7999999999999999999999999987654 2222211
Q ss_pred CchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceE
Q 001295 668 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS 747 (1106)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~ 747 (1106)
-.-.++.
T Consensus 267 -------------------------------------------------------------------------~gleRvW 273 (794)
T KOG0276|consen 267 -------------------------------------------------------------------------YGLERVW 273 (794)
T ss_pred -------------------------------------------------------------------------cCCceEE
Confidence 0234667
Q ss_pred EEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEE
Q 001295 748 RLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS 827 (1106)
Q Consensus 748 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~ 827 (1106)
+++-.+.++.+++|.++|.+.+= .......+.+++.|+.+-+
T Consensus 274 ~I~~~k~~~~i~vG~Deg~i~v~--------------------------------------lgreeP~vsMd~~gKIiwa 315 (794)
T KOG0276|consen 274 CIAAHKGDGKIAVGFDEGSVTVK--------------------------------------LGREEPAVSMDSNGKIIWA 315 (794)
T ss_pred EEeecCCCCeEEEeccCCcEEEE--------------------------------------ccCCCCceeecCCccEEEE
Confidence 77777777778888888877651 1222234555666665554
Q ss_pred EeC--CeEEEEE------cCCCceee----eecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCccc
Q 001295 828 ASG--GKISLFN------MMTFKTMA----TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 895 (1106)
Q Consensus 828 ~sd--g~i~vwd------~~~~~~~~----~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~ 895 (1106)
... -.+.+-. +..|+.+. .+-.-.-....++-|| +|+++++++ ||.-.||..-..+ ..+.+
T Consensus 316 ~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsP-NGrfV~Vcg-dGEyiIyTala~R-----nK~fG 388 (794)
T KOG0276|consen 316 VHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSP-NGRFVVVCG-DGEYIIYTALALR-----NKAFG 388 (794)
T ss_pred cCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCC-CCcEEEEec-CccEEEEEeeehh-----hcccc
Confidence 432 1122222 22222221 1111111234678889 898888765 8888888743222 12455
Q ss_pred CeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCc
Q 001295 896 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL 975 (1106)
Q Consensus 896 ~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~ 975 (1106)
.-....|++|....++--.++.|+++ ++.+..+.. . .-....+--.|.+|.+..++.+++||.+++
T Consensus 389 ~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi--~----------~~~~~e~i~gg~Llg~~ss~~~~fydW~~~ 454 (794)
T KOG0276|consen 389 SGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSI--R----------PDMSAEGIFGGPLLGVRSSDFLCFYDWESG 454 (794)
T ss_pred cceeEEEcCCCCeEEEEecCCceEEE--ecceecccc--c----------cccceeeecCCceEEEEeCCeEEEEEcccc
Confidence 66778999998888888888889988 443321110 0 001122233466677788999999999999
Q ss_pred eEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEE
Q 001295 976 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1015 (1106)
Q Consensus 976 ~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd 1015 (1106)
+.++.+.. ....+.|+.+|.+++.++.|. .+|+.
T Consensus 455 ~lVrrI~v-----~~k~v~w~d~g~lVai~~d~S-fyil~ 488 (794)
T KOG0276|consen 455 ELVRRIEV-----TSKHVYWSDNGELVAIAGDDS-FYILK 488 (794)
T ss_pred eEEEEEee-----ccceeEEecCCCEEEEEecCc-eeEEE
Confidence 99998753 456789999999998887654 44443
No 23
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.9e-35 Score=319.74 Aligned_cols=556 Identities=14% Similarity=0.182 Sum_probs=414.5
Q ss_pred CCCCcceeeecc-CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCe
Q 001295 337 EDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSV 415 (1106)
Q Consensus 337 ~~~~~~~~~~~~-h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V 415 (1106)
+.-..+++..-+ +.+.|+|++=..+--| +|. ...|.+|-- |+.+.. ++.+|...|
T Consensus 62 d~~kl~ll~vs~~lp~~I~alas~~~~vy-~A~---g~~i~~~~r--gk~i~~------------------~~~~~~a~v 117 (910)
T KOG1539|consen 62 DVNKLNLLFVSKPLPDKITALASDKDYVY-VAS---GNKIYAYAR--GKHIRH------------------TTLLHGAKV 117 (910)
T ss_pred eccceEEEEecCCCCCceEEEEecCceEE-Eec---CcEEEEEEc--cceEEE------------------EeccccceE
Confidence 333444555543 7899999986655432 322 356666643 433322 456777777
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEEccCC-ceee-eeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCce
Q 001295 416 NRVIWSPDGSLFGVAYSRHIVQIYSYHGG-DEVR-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 493 (1106)
Q Consensus 416 ~~l~~spdg~~las~~~d~~v~iwd~~~~-~~~~-~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 493 (1106)
.-+. |=|.+++++..++.+.||+..++ +... +...++...+.|+++. +|..---.++.|+.+|.+.+|++++++.
T Consensus 118 ~~l~--~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~ 194 (910)
T KOG1539|consen 118 HLLL--PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKV 194 (910)
T ss_pred EEEe--eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcE
Confidence 7765 45889999999999999999884 2211 1112222223376664 4543212488999999999999999999
Q ss_pred eEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEE
Q 001295 494 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 573 (1106)
Q Consensus 494 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 573 (1106)
+++++++...|+++.-+|.- ..++.|..+|+|.+++++..+.+..++...+.|++++|..||.
T Consensus 195 v~~f~~~~s~IT~ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~--------------- 257 (910)
T KOG1539|consen 195 VYTFQEFFSRITAIEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGN--------------- 257 (910)
T ss_pred EEEecccccceeEeccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCC---------------
Confidence 99999999999999854444 6899999999999999999999999988888899999999987
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCcceeEEEc-cCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC---chhhhhh
Q 001295 574 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG---IRLLRTF 649 (1106)
Q Consensus 574 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~ 649 (1106)
..+++|+..|.+-+||++..+.+..+. .| ...+....|-|....+++++.|+.+++|=..++ .+.++.-
T Consensus 258 -----p~las~~~~G~m~~wDLe~kkl~~v~~nah--~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R 330 (910)
T KOG1539|consen 258 -----PLLASGRSNGDMAFWDLEKKKLINVTRNAH--YGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSR 330 (910)
T ss_pred -----eeEEeccCCceEEEEEcCCCeeeeeeeccc--cCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeec
Confidence 247788888999999999888777665 34 457899999999999999999999999855543 2445555
Q ss_pred cccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCC
Q 001295 650 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 729 (1106)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~ 729 (1106)
.||+.+.. ++..++ ..+..+.+++.|++.+.+.+......
T Consensus 331 ~GHs~Pp~--------~irfy~--------------------------------~~g~~ilsa~~Drt~r~fs~~~e~~~ 370 (910)
T KOG1539|consen 331 GGHSAPPS--------CIRFYG--------------------------------SQGHFILSAKQDRTLRSFSVISESQS 370 (910)
T ss_pred cCCCCCch--------heeeec--------------------------------cCcEEEEecccCcchhhhhhhHHHHh
Confidence 66666543 222222 34677888889998888887643322
Q ss_pred cccee---------ccc--CccccccceEEEEEcCC-----CceEEEeecCceEEEeeccccccCCCCccccccCccccC
Q 001295 730 NQCRS---------LRL--PENLRATKISRLIFTNS-----GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 793 (1106)
Q Consensus 730 ~~~~~---------~~~--~~~~~~~~i~~~~~s~~-----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~ 793 (1106)
..... ... ...-.-.+|..+++... .+.+.+.-++...+.|+++...
T Consensus 371 ~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~----------------- 433 (910)
T KOG1539|consen 371 QELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKT----------------- 433 (910)
T ss_pred HhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcc-----------------
Confidence 22211 000 01113345667776542 3334444445788888876422
Q ss_pred CCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeee---cCCCCCeeEEEEecCCCceEEE
Q 001295 794 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAI 869 (1106)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~---~~~~~~v~~l~~s~~d~~~la~ 869 (1106)
.|+.....-+.......+++++.++.|++.+.|. .|.|.+|++++|-....+ ..|..+|+.++... -++.+++
T Consensus 434 --~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vs 510 (910)
T KOG1539|consen 434 --SGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVS 510 (910)
T ss_pred --cccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEE
Confidence 1221111000011457799999999999999998 799999999999988888 58999999999987 7889999
Q ss_pred eeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCce
Q 001295 870 GMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR 949 (1106)
Q Consensus 870 g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 949 (1106)
++.+|.+.+||..+..++..++- ...++++..+.....+|.+..|-.|+++|+.+.+ ....+.||.. .|+.
T Consensus 511 a~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k-----vvR~f~gh~n---ritd 581 (910)
T KOG1539|consen 511 AGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRK-----VVREFWGHGN---RITD 581 (910)
T ss_pred ccCcceEEEEecCCcceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhh-----hhHHhhcccc---ceee
Confidence 99999999999999888888763 4568889999999999999999999999998843 4556667764 8999
Q ss_pred EEEcCCCcEEEE-EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC-CeEEEEE
Q 001295 950 VQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-ATVCVFS 1015 (1106)
Q Consensus 950 ~~~s~dg~~l~~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D-g~i~vwd 1015 (1106)
++|||||++|++ +.|++|++||+.++.++..+.. ..+.+++.|||+|.+|||+..| .-|++|-
T Consensus 582 ~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v---d~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 582 MTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV---DSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred eEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec---CCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 999999999999 6899999999999999988764 6799999999999999999998 5699996
No 24
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.8e-37 Score=290.25 Aligned_cols=260 Identities=21% Similarity=0.306 Sum_probs=220.4
Q ss_pred eeeecc-CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEc
Q 001295 343 VTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 421 (1106)
Q Consensus 343 ~~~~~~-h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 421 (1106)
+..++. |++.|+.++..+.+..++.+++.|.++.+|++.......-. ....+.||+..|..+..+
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~--------------~~r~~~GHsH~v~dv~~s 72 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGV--------------PVRRLTGHSHFVSDVVLS 72 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCc--------------eeeeeeccceEecceEEc
Confidence 334455 99999999999998889999999999999998764222111 111478999999999999
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEecc-
Q 001295 422 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH- 500 (1106)
Q Consensus 422 pdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h- 500 (1106)
+||++.++++.|+++++||+.+|+..+ .|.||...|.+++|++|++ .++||+.|++|++||+.. .+..++..+
T Consensus 73 ~dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g-~ck~t~~~~~ 146 (315)
T KOG0279|consen 73 SDGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLG-VCKYTIHEDS 146 (315)
T ss_pred cCCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeecc-cEEEEEecCC
Confidence 999999999999999999999997655 5889999999999999999 699999999999999654 445555443
Q ss_pred -CCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCC
Q 001295 501 -EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 579 (1106)
Q Consensus 501 -~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~ 579 (1106)
.+.|.|++|+|+.+..+|++++.|++|++||+++.+....+.+|.+.++.++++|||.
T Consensus 147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs--------------------- 205 (315)
T KOG0279|consen 147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS--------------------- 205 (315)
T ss_pred CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCC---------------------
Confidence 7899999999998778999999999999999999888888899988888888888776
Q ss_pred EEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhh
Q 001295 580 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT 648 (1106)
Q Consensus 580 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 648 (1106)
.+++|+.||.+.+||++.++.+..+.. ...|.+++|+|+...|+.+.. ..|+|||+.++ .++..
T Consensus 206 lcasGgkdg~~~LwdL~~~k~lysl~a---~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~-~~v~~ 269 (315)
T KOG0279|consen 206 LCASGGKDGEAMLWDLNEGKNLYSLEA---FDIVNSLCFSPNRYWLCAATA-TSIKIWDLESK-AVVEE 269 (315)
T ss_pred EEecCCCCceEEEEEccCCceeEeccC---CCeEeeEEecCCceeEeeccC-CceEEEeccch-hhhhh
Confidence 688899999999999999999888854 346999999999877776665 56999999887 44443
No 25
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2e-36 Score=288.14 Aligned_cols=286 Identities=16% Similarity=0.224 Sum_probs=251.1
Q ss_pred ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295 407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 486 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 486 (1106)
+|+||.+.|.++.|++|.++|++++.||.+.|||.-+....+ -+.-....|..++|+|.|+ +++.||.|+...||
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY 124 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence 589999999999999999999999999999999998876554 3445678999999999999 89999999999999
Q ss_pred eCCCC------ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEec-CCCe
Q 001295 487 DATNG------AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA-DGTR 559 (1106)
Q Consensus 487 d~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~ 559 (1106)
++.+. ...+.+.+|.+.+.++.|.. | ..|++++.|.+..+||++++.....+.+|.+.|.++.++| +++
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n- 200 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--D-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN- 200 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcC--C-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC-
Confidence 99854 34567999999999999854 3 5799999999999999999999999999999999998888 554
Q ss_pred EEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEc
Q 001295 560 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 639 (1106)
Q Consensus 560 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 639 (1106)
.+++|+-|+..++||++.+.++++|.+|. ..|+++.|.|+|.-+++|++|++.|+||+
T Consensus 201 --------------------tFvSg~cD~~aklWD~R~~~c~qtF~ghe--sDINsv~ffP~G~afatGSDD~tcRlyDl 258 (343)
T KOG0286|consen 201 --------------------TFVSGGCDKSAKLWDVRSGQCVQTFEGHE--SDINSVRFFPSGDAFATGSDDATCRLYDL 258 (343)
T ss_pred --------------------eEEecccccceeeeeccCcceeEeecccc--cccceEEEccCCCeeeecCCCceeEEEee
Confidence 79999999999999999999999999875 48999999999999999999999999999
Q ss_pred cCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCcee
Q 001295 640 SDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSK 719 (1106)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 719 (1106)
+.+. .+..
T Consensus 259 RaD~-~~a~----------------------------------------------------------------------- 266 (343)
T KOG0286|consen 259 RADQ-ELAV----------------------------------------------------------------------- 266 (343)
T ss_pred cCCc-EEee-----------------------------------------------------------------------
Confidence 8761 1110
Q ss_pred eEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCc
Q 001295 720 VWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIM 799 (1106)
Q Consensus 720 vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 799 (1106)
|+++
T Consensus 267 -------------------------------ys~~--------------------------------------------- 270 (343)
T KOG0286|consen 267 -------------------------------YSHD--------------------------------------------- 270 (343)
T ss_pred -------------------------------eccC---------------------------------------------
Confidence 0000
Q ss_pred cccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEE
Q 001295 800 MTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQI 878 (1106)
Q Consensus 800 ~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~i 878 (1106)
....+|++++||..|++|.+|. |.++.+||.-.++....+.+|.+.|+|+..+| ||.-+++|+.|.+++|
T Consensus 271 --------~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~-DG~av~TgSWDs~lri 341 (343)
T KOG0286|consen 271 --------SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSP-DGMAVATGSWDSTLRI 341 (343)
T ss_pred --------cccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECC-CCcEEEecchhHheee
Confidence 0244578899999999998887 88999999999999999999999999999999 9999999999999999
Q ss_pred EE
Q 001295 879 YN 880 (1106)
Q Consensus 879 wd 880 (1106)
|.
T Consensus 342 W~ 343 (343)
T KOG0286|consen 342 WA 343 (343)
T ss_pred cC
Confidence 94
No 26
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=6.3e-35 Score=297.50 Aligned_cols=509 Identities=19% Similarity=0.265 Sum_probs=372.4
Q ss_pred ceeeeccCCCCcEEEEEecCCCeEEEEEeccC--------cEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCc
Q 001295 342 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVG--------DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV 413 (1106)
Q Consensus 342 ~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg--------~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~ 413 (1106)
.+...++|++.|-|++.+||.- .+|+|...| .|+|||..+-..+.. +..-..
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri-~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V-------------------~g~f~~ 155 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRI-RVATGQGAGTSGRPLQPHVRIWDSVTLSTLHV-------------------IGFFDR 155 (626)
T ss_pred hcccccCCCCceEEEeecCCce-eeccCcccccCCCcCCCeeeecccccceeeee-------------------eccccc
Confidence 3455678999999999999987 488887766 399999777665553 455567
Q ss_pred CeEEEEEcc--CCCEEEEE--eCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCC
Q 001295 414 SVNRVIWSP--DGSLFGVA--YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 489 (1106)
Q Consensus 414 ~V~~l~~sp--dg~~las~--~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~ 489 (1106)
.|.|++||+ .|.+|+.. +.+..+.|||...+..... ...-...|....|.|.+.+ ++++++ .+.+..|+.+
T Consensus 156 GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~---vk~sne~v~~a~FHPtd~n-liit~G-k~H~~Fw~~~ 230 (626)
T KOG2106|consen 156 GVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGP---VKTSNEVVFLATFHPTDPN-LIITCG-KGHLYFWTLR 230 (626)
T ss_pred cceeeeecccCCCceEEEecCCCccccchhhchhhhccCc---ceeccceEEEEEeccCCCc-EEEEeC-CceEEEEEcc
Confidence 899999999 45666654 4557799999998776553 3345678999999999987 677777 5899999999
Q ss_pred CCceeEE---Eecc-CCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeee
Q 001295 490 NGAKQYI---FEGH-EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 565 (1106)
Q Consensus 490 ~~~~~~~---~~~h-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~ 565 (1106)
.+....+ +..+ ...|.|++|.++.+ +++|..+|.|.+|+............|.+.|.+++...+|.
T Consensus 231 ~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt------- 300 (626)
T KOG2106|consen 231 GGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT------- 300 (626)
T ss_pred CCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-------
Confidence 8876543 4433 36689999876654 89999999999999977666655568899999999999997
Q ss_pred ccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchh
Q 001295 566 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 645 (1106)
Q Consensus 566 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 645 (1106)
|++|+.|..|..|| ..-+.++..+.....+.++.++-...+ |++|+..+.|..=.+.++...
T Consensus 301 ---------------llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f~~ 362 (626)
T KOG2106|consen 301 ---------------LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNFILQGTLENGFTL 362 (626)
T ss_pred ---------------EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeeccceEEEeeecCCceE
Confidence 88899999999999 555556666655666677766654433 777777666654444333110
Q ss_pred hhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCC
Q 001295 646 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 725 (1106)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 725 (1106)
.
T Consensus 363 ~------------------------------------------------------------------------------- 363 (626)
T KOG2106|consen 363 T------------------------------------------------------------------------------- 363 (626)
T ss_pred E-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccC
Q 001295 726 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 805 (1106)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 805 (1106)
..+|......++..|+.+.+++++.|+.+++|+-.. -+|...
T Consensus 364 -------------v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k---------------~~wt~~---------- 405 (626)
T KOG2106|consen 364 -------------VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHK---------------LEWTKI---------- 405 (626)
T ss_pred -------------EEecccceeeEEcCCChhheeeccCcceEEEccCCc---------------eeEEEE----------
Confidence 023667788899999999999999999999997211 122211
Q ss_pred CCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecc
Q 001295 806 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 884 (1106)
Q Consensus 806 ~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~ 884 (1106)
-..++.|+.|.|.| .+|.|. .|...+.|.++...+..-. ...++++++|+| +|.+||+|+.|+.|+||.+...
T Consensus 406 ---~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 406 ---IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred ---ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcC-CCCEEEEecCCCeEEEEEECCC
Confidence 46678899999999 888888 8999999999955554444 488899999999 9999999999999999998753
Q ss_pred -eEEEEe-cCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE
Q 001295 885 -EVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 962 (1106)
Q Consensus 885 -~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 962 (1106)
...... +.|..+|+.|.||+|+++|.+.+.|-.|..|.-.. +.. . .++..+.|..
T Consensus 480 g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~--~~~-----~--------ts~kDvkW~t-------- 536 (626)
T KOG2106|consen 480 GRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSE--CKQ-----I--------TSVKDVKWAT-------- 536 (626)
T ss_pred CcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcccc--Ccc-----c--------ceecceeeee--------
Confidence 333222 22448999999999999999999999999993322 111 0 0122333311
Q ss_pred eCCeEEEEecCCceEeeec--ccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCc
Q 001295 963 HETQLAIFETTKLECVKQW--VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNV 1040 (1106)
Q Consensus 963 ~d~~v~i~d~~~~~~~~~~--~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v 1040 (1106)
..|.-.| ....|...|..++-+.+.++||+|.+.|+|++|...--+..+.+ +.+.. |.+. +
T Consensus 537 ------------~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~--he~~g--hs~~-v 599 (626)
T KOG2106|consen 537 ------------YTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPS--HEYGG--HSSH-V 599 (626)
T ss_pred ------------eEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccc--eeecc--ccce-e
Confidence 1111111 11356778888999999999999999999999998765544322 22333 3233 4
Q ss_pred cceEEEEeCCCCCEEEEEeCCCcEEEEee
Q 001295 1041 HPLVIAAHPQEPNEFALGLSDGGVHVFEP 1069 (1106)
Q Consensus 1041 ~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~ 1069 (1106)
. .++|...| ..+++.+.|.+|..|++
T Consensus 600 t--~V~Fl~~d-~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 600 T--NVAFLCKD-SHLISTGKDTSIMQWRL 625 (626)
T ss_pred E--EEEEeeCC-ceEEecCCCceEEEEEe
Confidence 4 79999855 56666669999999997
No 27
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-36 Score=284.87 Aligned_cols=296 Identities=15% Similarity=0.228 Sum_probs=250.3
Q ss_pred cccccceEEEEEcCC-CceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEE
Q 001295 740 NLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL 818 (1106)
Q Consensus 740 ~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~ 818 (1106)
.+|.+.|+.++..+. ...+++++.|..+.+|++... |...|..+.. +.| |...|..++.
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~-~~G--HsH~v~dv~~ 71 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR-LTG--HSHFVSDVVL 71 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee-eec--cceEecceEE
Confidence 459999999999887 556778888999999998743 3334444433 444 9999999999
Q ss_pred ecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCc--cc
Q 001295 819 SKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH--SK 895 (1106)
Q Consensus 819 s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h--~~ 895 (1106)
++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.|++|+.|.+|.+|++... +..++..+ .+
T Consensus 72 s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~ 149 (315)
T KOG0279|consen 72 SSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHRE 149 (315)
T ss_pred ccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeeccc-EEEEEecCCCcC
Confidence 99999999999 99999999999999999999999999999999 8999999999999999998754 44444333 78
Q ss_pred CeeEEEEecC--CCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEec
Q 001295 896 RITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFET 972 (1106)
Q Consensus 896 ~V~~l~~s~d--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~ 972 (1106)
-|+|+.|+|+ ..+|+++|.|++|++||+++.+ ....+.||. ..+..+++||||..+++ +.|+.+.+||+
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-----l~~~~~gh~---~~v~t~~vSpDGslcasGgkdg~~~LwdL 221 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-----LRTTFIGHS---GYVNTVTVSPDGSLCASGGKDGEAMLWDL 221 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-----hhhcccccc---ccEEEEEECCCCCEEecCCCCceEEEEEc
Confidence 8999999998 7899999999999999999844 345555665 48999999999999999 58999999999
Q ss_pred CCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCC
Q 001295 973 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEP 1052 (1106)
Q Consensus 973 ~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~ 1052 (1106)
+.++++..+ +|...|.+++|+|+.-+|+.+ .+..|+|||++++..+..+.+..-.+ ....+.+..++++|++ ||
T Consensus 222 ~~~k~lysl---~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~-dG 295 (315)
T KOG0279|consen 222 NEGKNLYSL---EAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSA-DG 295 (315)
T ss_pred cCCceeEec---cCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcC-CC
Confidence 999997776 678999999999998777766 46679999999999998887554444 2234457778999999 79
Q ss_pred CEEEEEeCCCcEEEEeecC
Q 001295 1053 NEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus 1053 ~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
..|++|..|+.|++|.+..
T Consensus 296 ~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 296 QTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred cEEEeeecCCcEEEEEeec
Confidence 9999999999999999854
No 28
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=4.8e-35 Score=310.21 Aligned_cols=547 Identities=17% Similarity=0.231 Sum_probs=385.4
Q ss_pred EEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCC---EEEEEe
Q 001295 355 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS---LFGVAY 431 (1106)
Q Consensus 355 ~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~---~las~~ 431 (1106)
...|.|.+ ++|.|. ...|.+||..+..... .+.||..+|+|+.|-|+.+ ++++|+
T Consensus 19 v~sw~~~~--~vafGa-~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~ 76 (764)
T KOG1063|consen 19 VSSWGPGG--LVAFGA-GPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGD 76 (764)
T ss_pred cccccccc--eEEecC-CceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEcc
Confidence 34455655 466655 4789999987653332 4899999999999999888 899999
Q ss_pred CCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCc--eeEEEeccCCCe--EEE
Q 001295 432 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA--KQYIFEGHEAPV--YSV 507 (1106)
Q Consensus 432 ~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~h~~~v--~~~ 507 (1106)
.|+.|++|.++. +.+.....+.+|...+.|+. ..-. .......|+++.+||.+..+ +...+.-..+.+ .|+
T Consensus 77 sD~~v~lW~l~~-~~~~~i~~~~g~~~~~~cv~--a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL 151 (764)
T KOG1063|consen 77 SDGRVILWKLRD-EYLIKIYTIQGHCKECVCVV--ARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCL 151 (764)
T ss_pred CCCcEEEEEEee-hheEEEEeecCcceeEEEEE--eeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHH
Confidence 999999999994 34555667888766665554 2222 22223689999999985555 233333222333 344
Q ss_pred eccccCCceEEEEEecCCeEEEEeCCCC--CceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEE
Q 001295 508 CPHHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 585 (1106)
Q Consensus 508 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 585 (1106)
++.+..+.-+++.|+.+..|.++.-... .....+.+|.++|.+++|...+. +.-+|++++
T Consensus 152 ~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~------------------~~~~laS~S 213 (764)
T KOG1063|consen 152 AALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG------------------DDLLLASSS 213 (764)
T ss_pred hhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC------------------CcEEEEecC
Confidence 4444344445666777778888755432 34557889999999999987664 223588899
Q ss_pred CCCeEEEEECCCcc---------------------eeEEEc--------cCCCCCCcCeEEEccCCCEEEEEeCCCcEEE
Q 001295 586 DDFSIKFWDMDSVQ---------------------LLTSID--------ADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 636 (1106)
Q Consensus 586 ~d~~i~iwd~~~~~---------------------~~~~~~--------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 636 (1106)
.|..||||.+.-+. ....+. ..+|.+.|.++.|+|.+..|++++.|.++.+
T Consensus 214 QD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmii 293 (764)
T KOG1063|consen 214 QDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMII 293 (764)
T ss_pred CceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEE
Confidence 99999999864322 010111 1245668999999999988999999999999
Q ss_pred EEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCC
Q 001295 637 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 716 (1106)
Q Consensus 637 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 716 (1106)
|...+..-. .. .
T Consensus 294 W~pd~~tGi---Wv-----------------------------------------------------------------~ 305 (764)
T KOG1063|consen 294 WKPDENTGI---WV-----------------------------------------------------------------D 305 (764)
T ss_pred EecCCccce---EE-----------------------------------------------------------------E
Confidence 965433000 00 0
Q ss_pred ceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCC
Q 001295 717 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS 796 (1106)
Q Consensus 717 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~ 796 (1106)
.+++=.+ .+......+..|+|+++.+++-+..|..++|.... ...|...
T Consensus 306 ~vRlGe~----------------gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d--------------~~~w~~~- 354 (764)
T KOG1063|consen 306 VVRLGEV----------------GGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKD--------------KTFWTQE- 354 (764)
T ss_pred EEEeecc----------------cccccceeeEEEcCCCCEEEEecccCcEEEEeccC--------------ccceeec-
Confidence 0000000 01334567788999999999999999999997221 1123321
Q ss_pred CCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCC----ceeeeecCCCCCeeEEEEecCCCceEEEee
Q 001295 797 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGM 871 (1106)
Q Consensus 797 ~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~----~~~~~~~~~~~~v~~l~~s~~d~~~la~g~ 871 (1106)
..+. +|...|+.++|+|.|.+|++.+ |-+-|+|-.-.. ..+..-+-|...++|++|-+ ....+++|.
T Consensus 355 -----~~iS--GH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~~~~FVSgA 426 (764)
T KOG1063|consen 355 -----PVIS--GHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN-EDLQFVSGA 426 (764)
T ss_pred -----cccc--cccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-CCceeeecc
Confidence 1122 4999999999999999999999 999999875521 22333455788899999988 677888888
Q ss_pred CCCcEEEEEee-------------------------------------------cce-----------------------
Q 001295 872 DDSSIQIYNVR-------------------------------------------VDE----------------------- 885 (1106)
Q Consensus 872 ~dg~v~iwd~~-------------------------------------------~~~----------------------- 885 (1106)
+...+|+|+.. +|.
T Consensus 427 dEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~E 506 (764)
T KOG1063|consen 427 DEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTE 506 (764)
T ss_pred cceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChH
Confidence 88999999841 010
Q ss_pred ----------EEEEecCcccCeeEEEEecCCCEEEEEcCCC-----cEEEEeCCCcccccceeecccCCCCCCCCCCceE
Q 001295 886 ----------VKSKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV 950 (1106)
Q Consensus 886 ----------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 950 (1106)
.++++.||...|++++.+|+|+++||++... .|++|+..++.+ .+...+|.. .|+.+
T Consensus 507 dqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~-----~~~L~~HsL---TVT~l 578 (764)
T KOG1063|consen 507 DQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ-----VQELEGHSL---TVTRL 578 (764)
T ss_pred HHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh-----hheecccce---EEEEE
Confidence 1123568999999999999999999998653 489999998664 334556664 89999
Q ss_pred EEcCCCcEEEE-EeCCeEEEEecCCceEeeecc---cCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCc--eeEEe
Q 001295 951 QFHQDQIHFLV-VHETQLAIFETTKLECVKQWV---PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL--KLRCR 1024 (1106)
Q Consensus 951 ~~s~dg~~l~~-~~d~~v~i~d~~~~~~~~~~~---~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~--~~~~~ 1024 (1106)
+|||||++|++ +.|+++.+|....... ..+. ...|+.-|.+..|+||+.++||+|.|.+|+||..... +.+.+
T Consensus 579 ~FSpdg~~LLsvsRDRt~sl~~~~~~~~-~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~ 657 (764)
T KOG1063|consen 579 AFSPDGRYLLSVSRDRTVSLYEVQEDIK-DEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISR 657 (764)
T ss_pred EECCCCcEEEEeecCceEEeeeeecccc-hhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhh
Confidence 99999999998 7999999998743321 1111 4589999999999999999999999999999999888 44444
Q ss_pred eCCCcccCCCCCCCCccceEEEEeCCCCC----EEEEEeCCCcEEEEeec
Q 001295 1025 INPSAYLPAGVSSSNVHPLVIAAHPQEPN----EFALGLSDGGVHVFEPL 1070 (1106)
Q Consensus 1025 ~~~~~~~~~~~~~~~v~~~~~~~~~~d~~----~l~t~~~Dg~v~vW~~~ 1070 (1106)
+. .++. +..|. +++|.|.+.. .++.|-..|.|.+|+..
T Consensus 658 ~a---~~~~---~~aVT--Av~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 658 FA---CLKF---SLAVT--AVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred hc---hhcc---CCcee--eEEeeccccccccceEEEEecccEEEEEecc
Confidence 32 1222 23355 6677665444 78899999999999976
No 29
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.1e-35 Score=292.07 Aligned_cols=339 Identities=17% Similarity=0.249 Sum_probs=284.8
Q ss_pred ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295 407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 486 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 486 (1106)
.|..|++.|.+++.+|+.+++|+|+.|....||++.+|+... .+.+|...|+++.|+.||. +||||+.+|.|+||
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVF 133 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEE
Confidence 478999999999999999999999999999999999998554 6889999999999999999 89999999999999
Q ss_pred eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeec
Q 001295 487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 566 (1106)
Q Consensus 487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 566 (1106)
...++.....+...-..+.=+.|+|.. ..|+.|+.||.+-+|.+.+......+.+|+.++++-.|.|+|+
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp~a--~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK-------- 203 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHPRA--HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK-------- 203 (399)
T ss_pred EcccCceEEEeecccCceEEEEecccc--cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCc--------
Confidence 999999998887677788888998854 7999999999999999998877778888888888777777776
Q ss_pred cceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhh
Q 001295 567 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 646 (1106)
Q Consensus 567 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 646 (1106)
.++++..||+|++||..+++++..+....+ ....++.++..+..++.|+.++.+++.+..++ +.+
T Consensus 204 -------------r~~tgy~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg-KVv 268 (399)
T KOG0296|consen 204 -------------RILTGYDDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSG-KVV 268 (399)
T ss_pred -------------eEEEEecCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccc-eEE
Confidence 689999999999999999999999875553 35788999999999999999999988876665 111
Q ss_pred hhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCC
Q 001295 647 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 726 (1106)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 726 (1106)
....+
T Consensus 269 ~~~n~--------------------------------------------------------------------------- 273 (399)
T KOG0296|consen 269 NCNNG--------------------------------------------------------------------------- 273 (399)
T ss_pred EecCC---------------------------------------------------------------------------
Confidence 11100
Q ss_pred CCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCC
Q 001295 727 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 806 (1106)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 806 (1106)
.+..+....
T Consensus 274 ---------------------------~~~~l~~~~-------------------------------------------- 282 (399)
T KOG0296|consen 274 ---------------------------TVPELKPSQ-------------------------------------------- 282 (399)
T ss_pred ---------------------------CCccccccc--------------------------------------------
Confidence 000000000
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecce
Q 001295 807 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 885 (1106)
Q Consensus 807 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~ 885 (1106)
......|..+.++..-.+.|+|+ ||+|.|||+...+..+.+. |...|+.+.|-+ ..+|++++.||.|+.||.++|+
T Consensus 283 e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~ 359 (399)
T KOG0296|consen 283 EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQ 359 (399)
T ss_pred hhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccc
Confidence 00233344555666677888998 9999999999876655554 888899999986 5689999999999999999999
Q ss_pred EEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCC
Q 001295 886 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 924 (1106)
Q Consensus 886 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~ 924 (1106)
++.++.||...|.+++++|+.++++++|.|++.+|+++.
T Consensus 360 l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 360 LKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 999999999999999999999999999999999999874
No 30
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-34 Score=300.94 Aligned_cols=470 Identities=18% Similarity=0.217 Sum_probs=348.0
Q ss_pred cCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEe
Q 001295 408 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 487 (1106)
Q Consensus 408 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd 487 (1106)
+..++..|.++.|+|...+++++-.+|.|.|||.++...++ .+.-..-+|.+..|-+... .+++|++|..|+|++
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 45689999999999999999999999999999999988776 4556778999999998877 899999999999999
Q ss_pred CCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCC-CceeEeeCCCCeeEEEEEecCCCeEEEeeec
Q 001295 488 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 566 (1106)
Q Consensus 488 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 566 (1106)
..+++.+..|..|.+.|.+++.+|.. .++++++.|-+|++||++.. .+.+.+.+|.+-|.+++|.|...
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~-------- 153 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP-------- 153 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc--------
Confidence 99999999999999999999999876 69999999999999999875 45668999999999999998765
Q ss_pred cceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEcc--CCCEEEEEeCCCcEEEEEccCCch
Q 001295 567 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGIR 644 (1106)
Q Consensus 567 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~--~~~~l~~~~~dg~i~iwd~~~~~~ 644 (1106)
+.+++++-|++|++|.+.+..+..++.+| ...|+|+.|-+ |..+|++|++|.+++|||..+. .
T Consensus 154 ------------ntFaS~sLDrTVKVWslgs~~~nfTl~gH--ekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~ 218 (794)
T KOG0276|consen 154 ------------NTFASASLDRTVKVWSLGSPHPNFTLEGH--EKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-S 218 (794)
T ss_pred ------------cceeeeeccccEEEEEcCCCCCceeeecc--ccCcceEEeccCCCcceEEecCCCceEEEeecchH-H
Confidence 46999999999999999999999999877 45899999988 5579999999999999999888 7
Q ss_pred hhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecC
Q 001295 645 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 724 (1106)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 724 (1106)
++++++|
T Consensus 219 CV~TLeG------------------------------------------------------------------------- 225 (794)
T KOG0276|consen 219 CVQTLEG------------------------------------------------------------------------- 225 (794)
T ss_pred HHHHhhc-------------------------------------------------------------------------
Confidence 8888765
Q ss_pred CCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccccc
Q 001295 725 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 804 (1106)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 804 (1106)
|...|..+.|.|.-..+++++.||+++||.-.+- ++... +
T Consensus 226 -----------------Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty----------------------~lE~t-L 265 (794)
T KOG0276|consen 226 -----------------HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY----------------------KLEKT-L 265 (794)
T ss_pred -----------------ccccceEEEecCCCcEEEEecCCccEEEecCcce----------------------ehhhh-h
Confidence 5567788999999999999999999999975421 11110 0
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEE----EeeCCCcEEEEE
Q 001295 805 TDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA----IGMDDSSIQIYN 880 (1106)
Q Consensus 805 ~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la----~g~~dg~v~iwd 880 (1106)
...-..+.|++..+.+..+++|.|....+..+........+... ..|-|+. .+.... +.+.++ +
T Consensus 266 --n~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~~----gKIiwa~-~~ei~~~~~ks~~~~~-----e 333 (794)
T KOG0276|consen 266 --NYGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSMDSN----GKIIWAV-HSEIQAVNLKSVGAQK-----E 333 (794)
T ss_pred --hcCCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceeecCC----ccEEEEc-CceeeeeeceeccCcc-----c
Confidence 01467799999999999999999765555555544443333211 1222332 111111 111111 2
Q ss_pred eecceEEE----EecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCC
Q 001295 881 VRVDEVKS----KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 956 (1106)
Q Consensus 881 ~~~~~~~~----~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg 956 (1106)
+..|+.+. .+-.-.-.-..++-+|+|++++.++ ||.-+||..-..+ ...- +.-...+|++|.
T Consensus 334 v~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vcg-dGEyiIyTala~R-------nK~f------G~~~eFvw~~ds 399 (794)
T KOG0276|consen 334 VTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCG-DGEYIIYTALALR-------NKAF------GSGLEFVWAADS 399 (794)
T ss_pred ccCCccccchhhhccccccchHHhccCCCCcEEEEec-CccEEEEEeeehh-------hccc------ccceeEEEcCCC
Confidence 33343221 1111111123577789998887765 7778888633211 1111 244678999997
Q ss_pred cEEEE-EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCC
Q 001295 957 IHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1035 (1106)
Q Consensus 957 ~~l~~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1035 (1106)
...++ -+++.|.++ ++.+..+.+....+...| -.|.+|. ...++.+++||.+++++++++.
T Consensus 400 ne~avRes~~~vki~--knfke~ksi~~~~~~e~i------~gg~Llg-~~ss~~~~fydW~~~~lVrrI~--------- 461 (794)
T KOG0276|consen 400 NEFAVRESNGNVKIF--KNFKEHKSIRPDMSAEGI------FGGPLLG-VRSSDFLCFYDWESGELVRRIE--------- 461 (794)
T ss_pred CeEEEEecCCceEEE--ecceeccccccccceeee------cCCceEE-EEeCCeEEEEEcccceEEEEEe---------
Confidence 77777 578889998 777777777644332111 1344444 4557789999999999999998
Q ss_pred CCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeec
Q 001295 1036 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1070 (1106)
Q Consensus 1036 ~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~ 1070 (1106)
+.+-.+.|+. +|.+++.++ |-+.++..+.
T Consensus 462 ----v~~k~v~w~d-~g~lVai~~-d~Sfyil~~n 490 (794)
T KOG0276|consen 462 ----VTSKHVYWSD-NGELVAIAG-DDSFYILKFN 490 (794)
T ss_pred ----eccceeEEec-CCCEEEEEe-cCceeEEEec
Confidence 4444688886 566666666 4555666554
No 31
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8e-34 Score=307.67 Aligned_cols=489 Identities=17% Similarity=0.254 Sum_probs=346.7
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 428 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 428 (1106)
....|..++|+|...+ +.++-..|.|.+||+.-+.++.+ +..|.++|..++|+|++.+++
T Consensus 8 kSsRvKglsFHP~rPw-ILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFV 67 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPW-ILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFV 67 (1202)
T ss_pred ccccccceecCCCCCE-EEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEE
Confidence 4578999999999996 77889999999999998888774 789999999999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEe
Q 001295 429 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 508 (1106)
Q Consensus 429 s~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 508 (1106)
+||.|-.|+||+.++.+++. ++.||-+.|..+.|++.-. .++|+|+|.+|+||++.+++++..+.||...|.|..
T Consensus 68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 99999999999999876554 7999999999999999888 899999999999999999999999999999999999
Q ss_pred ccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCC-CCeeEE------EEEecCC--CeEEEeeeccceeEEEEcCCCC
Q 001295 509 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP-GRWCTT------MAYSADG--TRTYQGFRKRSLGVVQFDTTKN 579 (1106)
Q Consensus 509 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~------~~~s~~~--~~~~~~~~~~~i~~~~~~~~~~ 579 (1106)
|+|+. .+++++|.|.+||+||+........-.+. ...... +--.+|- +.++.||.. .++-++|+|.-.
T Consensus 143 FhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR-GVNwaAfhpTlp 219 (1202)
T KOG0292|consen 143 FHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR-GVNWAAFHPTLP 219 (1202)
T ss_pred cCCcc--ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc-ccceEEecCCcc
Confidence 99887 48999999999999998743332211110 000000 0000111 144555554 788899999999
Q ss_pred EEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccC
Q 001295 580 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT 659 (1106)
Q Consensus 580 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 659 (1106)
.+++|+.|..|++|.+...+.-..-...+|...|.++-|+|...++++.+.|++|+|||+... ..++.++.
T Consensus 220 liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfrr-------- 290 (1202)
T KOG0292|consen 220 LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFRR-------- 290 (1202)
T ss_pred eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-cceeeeec--------
Confidence 999999999999999977665444444456778999999999999999999999999998755 33332211
Q ss_pred CCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCc
Q 001295 660 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 739 (1106)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 739 (1106)
T Consensus 291 -------------------------------------------------------------------------------- 290 (1202)
T KOG0292|consen 291 -------------------------------------------------------------------------------- 290 (1202)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEe
Q 001295 740 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 819 (1106)
Q Consensus 740 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s 819 (1106)
...+...++..|..+. ++++.|+.+.+|.++ ...++.+ +
T Consensus 291 --endRFW~laahP~lNL-fAAgHDsGm~VFkle-----------------------------------RErpa~~--v- 329 (1202)
T KOG0292|consen 291 --ENDRFWILAAHPELNL-FAAGHDSGMIVFKLE-----------------------------------RERPAYA--V- 329 (1202)
T ss_pred --cCCeEEEEEecCCcce-eeeecCCceEEEEEc-----------------------------------ccCceEE--E-
Confidence 3356678888999984 455566566666654 1223333 2
Q ss_pred cCCCEEEEEeCCeEEEEEcCCCcee--eeecCC---CCCeeEEEEecCCCceEEEeeCC-CcEEEEEeecceE-----EE
Q 001295 820 KNDSYVMSASGGKISLFNMMTFKTM--ATFMPP---PPAATFLAFHPQDNNIIAIGMDD-SSIQIYNVRVDEV-----KS 888 (1106)
Q Consensus 820 ~~~~~l~~~sdg~i~vwd~~~~~~~--~~~~~~---~~~v~~l~~s~~d~~~la~g~~d-g~v~iwd~~~~~~-----~~ 888 (1106)
++..|...-|..|+-+|+.+.+-. ..++.. ..++.++.++|..+..+++...| |..-++.+.+... ..
T Consensus 330 -~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~ 408 (1202)
T KOG0292|consen 330 -NGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKD 408 (1202)
T ss_pred -cCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchh
Confidence 344455555889999999874432 334333 35789999999555555554444 4444554433210 00
Q ss_pred EecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEE
Q 001295 889 KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLA 968 (1106)
Q Consensus 889 ~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~ 968 (1106)
..+ .....++-.. -+++.+---.+..+.+=++.+... +.+... .....+.+..+|.+|+. +...|.
T Consensus 409 ~~k--~tG~~a~fva-rNrfavl~k~~~~v~ik~l~N~vt---kkl~~~-------~~~~~IF~ag~g~lll~-~~~~v~ 474 (1202)
T KOG0292|consen 409 VKK--GTGEGALFVA-RNRFAVLDKSNEQVVIKNLKNKVT---KKLLLP-------ESTDDIFYAGTGNLLLR-SPDSVT 474 (1202)
T ss_pred hhc--CCCCceEEEE-ecceEEEEecCcceEEecccchhh---hcccCc-------ccccceeeccCccEEEE-cCCeEE
Confidence 111 1112222222 223333333355566666665221 111111 13456677777766554 556799
Q ss_pred EEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEE
Q 001295 969 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1015 (1106)
Q Consensus 969 i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd 1015 (1106)
+||+.....+..+. -..|..+.||+|..+++.-+ -.+|.|.+
T Consensus 475 lfdvQq~~~~~si~----~s~vkyvvws~dm~~vAll~-Kh~i~i~~ 516 (1202)
T KOG0292|consen 475 LFDVQQKKKVGSIK----VSKVKYVVWSNDMSRVALLS-KHTITIAD 516 (1202)
T ss_pred EEEeecceEEEEEe----cCceeEEEEcCccchhhhcc-cceEEEEe
Confidence 99999999888887 56899999999998877654 34566655
No 32
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.9e-35 Score=273.44 Aligned_cols=297 Identities=18% Similarity=0.295 Sum_probs=239.6
Q ss_pred eEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccC
Q 001295 364 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG 443 (1106)
Q Consensus 364 ~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~ 443 (1106)
-||++++.|.+|++|...+|.+..+ +....+.|..+.+.||+++||+++. ..|++||+.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S 70 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNS 70 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccC-CeeEEEEccC
Confidence 4899999999999999999999874 4556678999999999999999875 5599999999
Q ss_pred CceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEec
Q 001295 444 GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL 523 (1106)
Q Consensus 444 ~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 523 (1106)
+..- +..++.+|...|+++.|..||+ .++|||+||+++|||++...+.+.++ |..+|++++.+|.. ..|++|..
T Consensus 71 ~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ--teLis~dq 144 (311)
T KOG0315|consen 71 NNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ--TELISGDQ 144 (311)
T ss_pred CCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc--ceEEeecC
Confidence 8753 5668999999999999999999 89999999999999999977766666 77999999877655 35666666
Q ss_pred CCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEE
Q 001295 524 DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTS 603 (1106)
Q Consensus 524 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 603 (1106)
+|.|++||+.+ ..+...
T Consensus 145 sg~irvWDl~~---------------------------------------------------------------~~c~~~ 161 (311)
T KOG0315|consen 145 SGNIRVWDLGE---------------------------------------------------------------NSCTHE 161 (311)
T ss_pred CCcEEEEEccC---------------------------------------------------------------Cccccc
Confidence 66666666653 222222
Q ss_pred EccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccc
Q 001295 604 IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGL 683 (1106)
Q Consensus 604 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1106)
+..+. ...|.++...|||.+++.+.+.|..++|++-+. ..... |.|..
T Consensus 162 liPe~-~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~-~~~s~------------------l~P~~------------ 209 (311)
T KOG0315|consen 162 LIPED-DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNH-QTASE------------------LEPVH------------ 209 (311)
T ss_pred cCCCC-CcceeeEEEcCCCcEEEEecCCccEEEEEccCC-Ccccc------------------ceEhh------------
Confidence 22111 235888999999999999999999999987653 10000 00000
Q ss_pred ccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeec
Q 001295 684 ADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS 763 (1106)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 763 (1106)
+
T Consensus 210 ------------------------------------------------------------------------k------- 210 (311)
T KOG0315|consen 210 ------------------------------------------------------------------------K------- 210 (311)
T ss_pred ------------------------------------------------------------------------h-------
Confidence 0
Q ss_pred CceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCC-
Q 001295 764 NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF- 841 (1106)
Q Consensus 764 dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~- 841 (1106)
++ .|...+..+.+|||+++||+++ |.+++||+.++.
T Consensus 211 ----------------------------------------~~--ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 211 ----------------------------------------FQ--AHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred ----------------------------------------ee--cccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence 01 1777788888999999999888 899999999887
Q ss_pred ceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEe
Q 001295 842 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS 903 (1106)
Q Consensus 842 ~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s 903 (1106)
+.-..+.+|...+..++||. |++||++|+.|+.+++|++..++.++...+|.....|++..
T Consensus 249 kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred eeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 55567889999999999999 99999999999999999999999999999999988888764
No 33
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.6e-36 Score=293.24 Aligned_cols=271 Identities=17% Similarity=0.279 Sum_probs=236.5
Q ss_pred eeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc
Q 001295 343 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 422 (1106)
Q Consensus 343 ~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 422 (1106)
...+.+|...|+.+-|+|+-. ++++++.|++|++||..+|+... .+.||.+.|..++|+.
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~-------------------~LrGHt~sv~di~~~a 160 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELER-------------------SLRGHTDSVFDISFDA 160 (406)
T ss_pred hhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhh-------------------hhhccccceeEEEEec
Confidence 334456999999999999988 79999999999999999998865 4899999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCC
Q 001295 423 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 502 (1106)
Q Consensus 423 dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 502 (1106)
.|++||+++.|-.+++||..+. .++...+.+|...|.+++|-|.|. +++|++.|.+|+.|++.+|.+++++.+|..
T Consensus 161 ~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h~e 236 (406)
T KOG0295|consen 161 SGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGHSE 236 (406)
T ss_pred CccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCchH
Confidence 9999999999999999999863 233346789999999999999998 899999999999999999999999999999
Q ss_pred CeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEc-CCCCEE
Q 001295 503 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD-TTKNRF 581 (1106)
Q Consensus 503 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~-~~~~~l 581 (1106)
.|..+.. ..||.++++++.|.+|++|-+.++.+...+..|..+|.+++|.|....-- +....-+ ..+.++
T Consensus 237 wvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~-------i~~at~~~~~~~~l 307 (406)
T KOG0295|consen 237 WVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPS-------ISEATGSTNGGQVL 307 (406)
T ss_pred hEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcc-------hhhccCCCCCccEE
Confidence 9999984 67889999999999999999999988999999999999999988764110 0000000 134689
Q ss_pred EEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhh
Q 001295 582 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649 (1106)
Q Consensus 582 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 649 (1106)
.+++.|++|++||+.++.++.++.+|.. .|..++|+|.|+||+++.+|+++++||+.+. ++.+.+
T Consensus 308 ~s~SrDktIk~wdv~tg~cL~tL~ghdn--wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~~ 372 (406)
T KOG0295|consen 308 GSGSRDKTIKIWDVSTGMCLFTLVGHDN--WVRGVAFSPGGKYILSCADDKTLRVWDLKNL-QCMKTL 372 (406)
T ss_pred EeecccceEEEEeccCCeEEEEEecccc--eeeeeEEcCCCeEEEEEecCCcEEEEEeccc-eeeecc
Confidence 9999999999999999999999998854 8999999999999999999999999999887 555444
No 34
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.1e-35 Score=295.88 Aligned_cols=343 Identities=19% Similarity=0.306 Sum_probs=273.8
Q ss_pred CCCCCCCCCCCCCCccccccccCCCCCCccc-----ccccccC-cccccCCCCCCCCCCCCCCCCCCCcceeeec-c-CC
Q 001295 279 TPPTNPSVDYPSGDSDHLSKRTRPIGISDEI-----NLPVNVL-PVSFTGHSHSHSHSQAFSTPEDLPKTVTRTL-N-QG 350 (1106)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-h~ 350 (1106)
.+..++.+||+.....+.+.|...++....+ .+.+++| +..|...- ...++.+..++- . -+
T Consensus 28 k~~~Rr~VDy~s~v~~~~~nR~~~~~~d~~~~~p~~~~~~~~~pp~~~~~dp-----------~~~~~tKf~h~s~NKvk 96 (464)
T KOG0284|consen 28 KPVARRTVDYNSPVCNYRQNRRWQYDRDRALLQPDSSYIIDLVPPSLYLDDP-----------SSAFTTKFVHTSSNKVK 96 (464)
T ss_pred chhhhcccCCCcHHHHHHHHHhhcccccccccCCCchhhhcccChhhccCCc-----------ccccccceEeccccccc
Confidence 3444788999988887776666555422222 4455555 23333211 122333333333 2 45
Q ss_pred CCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEE
Q 001295 351 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 430 (1106)
Q Consensus 351 ~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 430 (1106)
..|..|.|.|+|++ |++|+..|.+.+|+..+ .+|+ .++..|..+|+++.||++|.++++|
T Consensus 97 c~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~------fnFE-------------tilQaHDs~Vr~m~ws~~g~wmiSg 156 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTS------FNFE-------------TILQAHDSPVRTMKWSHNGTWMISG 156 (464)
T ss_pred cceeeEEEcCCCce-eEeecccccEEEecCce------eeHH-------------HHhhhhcccceeEEEccCCCEEEEc
Confidence 68999999999998 88999999999999632 2222 2578999999999999999999999
Q ss_pred eCCCeEEEEEccCCceeeeeeeeccc-cCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEec
Q 001295 431 YSRHIVQIYSYHGGDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 509 (1106)
Q Consensus 431 ~~d~~v~iwd~~~~~~~~~~~~l~~h-~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 509 (1106)
+.+|.|++|+..-... + .+.+| ...|.+++|+|++. .|+++++||+|+|||....+.-..+.||...|.++.|
T Consensus 157 D~gG~iKyWqpnmnnV-k---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdW 230 (464)
T KOG0284|consen 157 DKGGMIKYWQPNMNNV-K---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDW 230 (464)
T ss_pred CCCceEEecccchhhh-H---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCcceecc
Confidence 9999999999875432 2 34555 48999999999888 7999999999999999999999999999999999999
Q ss_pred cccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCe
Q 001295 510 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 589 (1106)
Q Consensus 510 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 589 (1106)
+|.. .++++||.|..|++||.+++.++.++..|...|..+.|++++. +|++++.|..
T Consensus 231 HP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N---------------------~Llt~skD~~ 287 (464)
T KOG0284|consen 231 HPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGN---------------------WLLTGSKDQS 287 (464)
T ss_pred CCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCC---------------------eeEEccCCce
Confidence 9887 5899999999999999999999999988888777777766664 8999999999
Q ss_pred EEEEECCCcceeEEEccCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcC
Q 001295 590 IKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTIS 668 (1106)
Q Consensus 590 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (1106)
++++|+++.+.+.++++| ...|+++.|+| ...+|.+|+.||.|..|.+... ..+.
T Consensus 288 ~kv~DiR~mkEl~~~r~H--kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~-~p~~--------------------- 343 (464)
T KOG0284|consen 288 CKVFDIRTMKELFTYRGH--KKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE-EPLG--------------------- 343 (464)
T ss_pred EEEEehhHhHHHHHhhcc--hhhheeeccccccccceeeccCCCceEEEecccc-cccc---------------------
Confidence 999999988888888877 44799999999 7889999999999999987522 1110
Q ss_pred chhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEE
Q 001295 669 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR 748 (1106)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~ 748 (1106)
....+|...|.+
T Consensus 344 --------------------------------------------------------------------~i~~AHd~~iws 355 (464)
T KOG0284|consen 344 --------------------------------------------------------------------EIPPAHDGEIWS 355 (464)
T ss_pred --------------------------------------------------------------------CCCcccccceee
Confidence 011348899999
Q ss_pred EEEcCCCceEEEeecCceEEEeecc
Q 001295 749 LIFTNSGNAILALASNAIHLLWKWQ 773 (1106)
Q Consensus 749 ~~~s~~~~~l~~~~~dg~i~iw~~~ 773 (1106)
+++.|-|..|++++.|.+++.|.-.
T Consensus 356 l~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 356 LAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eeccccceeEeecCCCcceeeeccC
Confidence 9999999999999999999999754
No 35
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=9.7e-34 Score=278.39 Aligned_cols=332 Identities=15% Similarity=0.190 Sum_probs=263.6
Q ss_pred eeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc
Q 001295 343 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 422 (1106)
Q Consensus 343 ~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 422 (1106)
+.....|++.|.+++.+|+.+ ++|||+.|..-.||++.+++.... +.+|+..|+|+.||.
T Consensus 57 ~~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~e-------------------ltgHKDSVt~~~Fsh 116 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGE-------------------LTGHKDSVTCCSFSH 116 (399)
T ss_pred eeehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCcceeE-------------------ecCCCCceEEEEEcc
Confidence 334445999999999999777 799999999999999999986653 799999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCC
Q 001295 423 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 502 (1106)
Q Consensus 423 dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 502 (1106)
||.+||+|+.+|.|+||+..++.... .+......|.-+.|+|-+. +|+.|+.||.+.+|.+.++...+.+.||..
T Consensus 117 dgtlLATGdmsG~v~v~~~stg~~~~---~~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~Gh~~ 191 (399)
T KOG0296|consen 117 DGTLLATGDMSGKVLVFKVSTGGEQW---KLDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSGHNS 191 (399)
T ss_pred CceEEEecCCCccEEEEEcccCceEE---EeecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecCCCC
Confidence 99999999999999999999988665 3445567888999999888 899999999999999999888999999999
Q ss_pred CeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEE
Q 001295 503 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 582 (1106)
Q Consensus 503 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 582 (1106)
++++=.|.|+ |+.++++..||+|++|+..+..+...+....+ ....++.++..+..++
T Consensus 192 ~ct~G~f~pd--GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~--------------------~~~~~~~~~~~~~~~~ 249 (399)
T KOG0296|consen 192 PCTCGEFIPD--GKRILTGYDDGTIIVWNPKTGQPLHKITQAEG--------------------LELPCISLNLAGSTLT 249 (399)
T ss_pred CcccccccCC--CceEEEEecCceEEEEecCCCceeEEeccccc--------------------CcCCccccccccceeE
Confidence 9999998654 78999999999999999999877766553221 1333444555555788
Q ss_pred EEECCCeEEEEECCCcceeEEEccC------CCCCCcCe---EEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccc
Q 001295 583 AAGDDFSIKFWDMDSVQLLTSIDAD------GGLPASPR---IRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 653 (1106)
Q Consensus 583 ~~~~d~~i~iwd~~~~~~~~~~~~~------~~~~~v~~---v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 653 (1106)
.|..++.+++-+..+|+.+....+. ++...+.+ +.++..-.+.|+|+-||+|.|||....
T Consensus 250 ~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~----------- 318 (399)
T KOG0296|consen 250 KGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS----------- 318 (399)
T ss_pred eccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc-----------
Confidence 8888999999888888877766521 01112222 233334445555555555555554322
Q ss_pred cccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccce
Q 001295 654 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR 733 (1106)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~ 733 (1106)
T Consensus 319 -------------------------------------------------------------------------------- 318 (399)
T KOG0296|consen 319 -------------------------------------------------------------------------------- 318 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCe
Q 001295 734 SLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV 813 (1106)
Q Consensus 734 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v 813 (1106)
. +.. . -.|...|
T Consensus 319 ------------------------------------------~----------------------~R~--~--c~he~~V 330 (399)
T KOG0296|consen 319 ------------------------------------------T----------------------LRH--I--CEHEDGV 330 (399)
T ss_pred ------------------------------------------h----------------------hhe--e--ccCCCce
Confidence 0 000 0 0177778
Q ss_pred eEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEee
Q 001295 814 PCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 882 (1106)
Q Consensus 814 ~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~ 882 (1106)
+.+.|-+ ..+|++++ +|.|+.||.++|+++.++.+|...|.+++++| +.+++++++.|++.+||++.
T Consensus 331 ~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 331 TKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 8888888 66777777 99999999999999999999999999999999 89999999999999999864
No 36
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.2e-34 Score=288.57 Aligned_cols=279 Identities=15% Similarity=0.259 Sum_probs=242.5
Q ss_pred cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295 742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 821 (1106)
Q Consensus 742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 821 (1106)
....|++++|+.+|..|+++..||.+++|+... .+... + ..|.++|.++.|+.+
T Consensus 234 ~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G-----------------------~l~~t-l--~~HkgPI~slKWnk~ 287 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGTLLATGSEDGEARIWNKDG-----------------------NLIST-L--GQHKGPIFSLKWNKK 287 (524)
T ss_pred ccCCcceEEecCCCCeEEEeecCcEEEEEecCc-----------------------hhhhh-h--hccCCceEEEEEcCC
Confidence 456899999999999999999999999998652 21111 1 139999999999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEE
Q 001295 822 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 900 (1106)
Q Consensus 822 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 900 (1106)
|.||++++ |+++.+||..++...+.+.-|..+-..+.|-. ..-+|+.+.||.|+|+.+....++.++.||.++|.+|
T Consensus 288 G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~--~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~al 365 (524)
T KOG0273|consen 288 GTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS--NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNAL 365 (524)
T ss_pred CCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec--CceEeecCCCceEEEEEecCCCcceeeecccCceEEE
Confidence 99999999 99999999999999999998888877888874 5578889999999999999999999999999999999
Q ss_pred EEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCC---------cEEEE-EeCCeEEEE
Q 001295 901 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ---------IHFLV-VHETQLAIF 970 (1106)
Q Consensus 901 ~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg---------~~l~~-~~d~~v~i~ 970 (1106)
.|.|.|.+|+|++.|++++||+..... +..-+.+|.. .|..+.|+|+| ..+++ +.|++|++|
T Consensus 366 k~n~tg~LLaS~SdD~TlkiWs~~~~~-----~~~~l~~Hsk---ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lw 437 (524)
T KOG0273|consen 366 KWNPTGSLLASCSDDGTLKIWSMGQSN-----SVHDLQAHSK---EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLW 437 (524)
T ss_pred EECCCCceEEEecCCCeeEeeecCCCc-----chhhhhhhcc---ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEE
Confidence 999999999999999999999987643 3444455553 78899999864 45555 799999999
Q ss_pred ecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCC
Q 001295 971 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1050 (1106)
Q Consensus 971 d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 1050 (1106)
|+..+.++..+. .|..+|++++|||+|+|||+|+.||.|.+|++.++++.+.+. + ...|. .++|+.
T Consensus 438 dv~~gv~i~~f~--kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~-------~--~~~If--el~Wn~- 503 (524)
T KOG0273|consen 438 DVESGVPIHTLM--KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ-------G--TGGIF--ELCWNA- 503 (524)
T ss_pred EccCCceeEeec--cCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec-------C--CCeEE--EEEEcC-
Confidence 999999999987 899999999999999999999999999999999999998876 2 33366 899998
Q ss_pred CCCEEEEEeCCCcEEEEeec
Q 001295 1051 EPNEFALGLSDGGVHVFEPL 1070 (1106)
Q Consensus 1051 d~~~l~t~~~Dg~v~vW~~~ 1070 (1106)
+|+.|..+-.||.+++-|+.
T Consensus 504 ~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 504 AGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCCEEEEEecCCCceEEEec
Confidence 67999999999999998874
No 37
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-34 Score=283.31 Aligned_cols=301 Identities=18% Similarity=0.325 Sum_probs=260.3
Q ss_pred eeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEe
Q 001295 452 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 531 (1106)
Q Consensus 452 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 531 (1106)
.+.+|..+|+.+-|.|+-. +++++++|++|++||..+|++...++||...|.++.|+. .|.++++++.|-.+.+||
T Consensus 103 ~l~g~r~~vt~v~~hp~~~--~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a--~Gk~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 103 KLAGHRSSVTRVIFHPSEA--LVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDA--SGKYLATCSSDLSAKLWD 178 (406)
T ss_pred hhhccccceeeeeeccCce--EEEEecCCceEEEEEccchhhhhhhhccccceeEEEEec--CccEEEecCCccchhhee
Confidence 4778999999999999988 899999999999999999999999999999999999854 458999999999999999
Q ss_pred CCC-CCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCC
Q 001295 532 YDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL 610 (1106)
Q Consensus 532 ~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 610 (1106)
..+ .+++..+.+|...|.+++|-|.|. ++++++.|.+|+.|++.+|-++.++.+|..
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~gd---------------------~ilS~srD~tik~We~~tg~cv~t~~~h~e- 236 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLGD---------------------HILSCSRDNTIKAWECDTGYCVKTFPGHSE- 236 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecCC---------------------eeeecccccceeEEecccceeEEeccCchH-
Confidence 987 455556777777777777766654 899999999999999999999999998855
Q ss_pred CCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccc
Q 001295 611 PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM 690 (1106)
Q Consensus 611 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1106)
.|..+..+.||.++++++.|.++++|-+.++ ++...++.
T Consensus 237 -wvr~v~v~~DGti~As~s~dqtl~vW~~~t~-~~k~~lR~--------------------------------------- 275 (406)
T KOG0295|consen 237 -WVRMVRVNQDGTIIASCSNDQTLRVWVVATK-QCKAELRE--------------------------------------- 275 (406)
T ss_pred -hEEEEEecCCeeEEEecCCCceEEEEEeccc-hhhhhhhc---------------------------------------
Confidence 8999999999999999999999999998877 44444432
Q ss_pred cccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEe
Q 001295 691 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW 770 (1106)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw 770 (1106)
|+..|.+++|.|...+ ....+
T Consensus 276 ---------------------------------------------------hEh~vEci~wap~~~~--~~i~~------ 296 (406)
T KOG0295|consen 276 ---------------------------------------------------HEHPVECIAWAPESSY--PSISE------ 296 (406)
T ss_pred ---------------------------------------------------cccceEEEEecccccC--cchhh------
Confidence 6667778888776531 00000
Q ss_pred eccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecC
Q 001295 771 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP 849 (1106)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~ 849 (1106)
..+ ..+ .++++.+++ |++|++||+.++.++.++.+
T Consensus 297 ---------------------------------at~--~~~---------~~~~l~s~SrDktIk~wdv~tg~cL~tL~g 332 (406)
T KOG0295|consen 297 ---------------------------------ATG--STN---------GGQVLGSGSRDKTIKIWDVSTGMCLFTLVG 332 (406)
T ss_pred ---------------------------------ccC--CCC---------CccEEEeecccceEEEEeccCCeEEEEEec
Confidence 000 011 567899999 99999999999999999999
Q ss_pred CCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeC
Q 001295 850 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 923 (1106)
Q Consensus 850 ~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~ 923 (1106)
|...|..++|+| +|+||+++.+|+++++||++++++...+..|..-|+++.|+.+..++++|+-|.++++|.-
T Consensus 333 hdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 333 HDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999963
No 38
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.7e-34 Score=280.52 Aligned_cols=254 Identities=19% Similarity=0.290 Sum_probs=224.2
Q ss_pred CCCCcceeeecc-CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCe
Q 001295 337 EDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSV 415 (1106)
Q Consensus 337 ~~~~~~~~~~~~-h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V 415 (1106)
...|-++.+.+. |.+.|.|+++.|-+++ +++|+.|++|+|||+.+|+...+ +.||-..|
T Consensus 137 WHapwKl~rVi~gHlgWVr~vavdP~n~w-f~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~v 196 (460)
T KOG0285|consen 137 WHAPWKLYRVISGHLGWVRSVAVDPGNEW-FATGSADRTIKIWDLATGQLKLT-------------------LTGHIETV 196 (460)
T ss_pred ccCcceehhhhhhccceEEEEeeCCCcee-EEecCCCceeEEEEcccCeEEEe-------------------ecchhhee
Confidence 445666666666 9999999999999885 99999999999999999988763 89999999
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeE
Q 001295 416 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 495 (1106)
Q Consensus 416 ~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 495 (1106)
..+++|+--.||.+++.|+.|+.||++..+.++ .+.||-..|.|++..|.-. .|++|+.|.+++|||+++...+.
T Consensus 197 r~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~ 271 (460)
T KOG0285|consen 197 RGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVH 271 (460)
T ss_pred eeeeecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEE
Confidence 999999999999999999999999999998877 6889999999999999988 89999999999999999999999
Q ss_pred EEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEc
Q 001295 496 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 575 (1106)
Q Consensus 496 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~ 575 (1106)
.+.||..+|..+.+.+.. ..+++|+.|++|++||++.++....+..|...+.+++..|..
T Consensus 272 ~l~GH~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e------------------ 331 (460)
T KOG0285|consen 272 VLSGHTNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKE------------------ 331 (460)
T ss_pred EecCCCCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCch------------------
Confidence 999999999999876543 579999999999999999988888877777766666655544
Q ss_pred CCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 576 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 576 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
..+++++.| .|+-|++..|..+..+.+| ..-+++++.+.|+ ++++|+++|.+.+||.+++
T Consensus 332 ---~~fASas~d-nik~w~~p~g~f~~nlsgh--~~iintl~~nsD~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 332 ---NLFASASPD-NIKQWKLPEGEFLQNLSGH--NAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred ---hhhhccCCc-cceeccCCccchhhccccc--cceeeeeeeccCc-eEEEcCCceEEEEEecCcC
Confidence 467777766 6999999999999998766 4478899988776 7788999999999999988
No 39
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.9e-33 Score=261.43 Aligned_cols=272 Identities=14% Similarity=0.272 Sum_probs=229.0
Q ss_pred eEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEEC
Q 001295 516 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM 595 (1106)
Q Consensus 516 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 595 (1106)
-+|+++|.|.+||+|...++.+..++......|..+.+.|+++ .|++++ ...||+||+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~---------------------~LAaa~-~qhvRlyD~ 68 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKK---------------------DLAAAG-NQHVRLYDL 68 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcc---------------------hhhhcc-CCeeEEEEc
Confidence 5899999999999999999999988888888888888777776 455554 568999999
Q ss_pred CCcce--eEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhh
Q 001295 596 DSVQL--LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAA 673 (1106)
Q Consensus 596 ~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (1106)
.++.. +.++.++ ...|..+.|..+|+++++|++||+++|||++.. .+.+.+
T Consensus 69 ~S~np~Pv~t~e~h--~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~-~~qR~~------------------------ 121 (311)
T KOG0315|consen 69 NSNNPNPVATFEGH--TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL-SCQRNY------------------------ 121 (311)
T ss_pred cCCCCCceeEEecc--CCceEEEEEeecCeEEEecCCCceEEEEeccCc-ccchhc------------------------
Confidence 98765 6666655 557999999999999999999999999999874 222222
Q ss_pred HhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcC
Q 001295 674 AAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTN 753 (1106)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 753 (1106)
.+...|.++...|
T Consensus 122 -------------------------------------------------------------------~~~spVn~vvlhp 134 (311)
T KOG0315|consen 122 -------------------------------------------------------------------QHNSPVNTVVLHP 134 (311)
T ss_pred -------------------------------------------------------------------cCCCCcceEEecC
Confidence 1557889999999
Q ss_pred CCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCe
Q 001295 754 SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGK 832 (1106)
Q Consensus 754 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~ 832 (1106)
+...|+++..+|.|++||+..... ....++. ....|.++.+.|||++++.+. .|.
T Consensus 135 nQteLis~dqsg~irvWDl~~~~c----------------------~~~liPe--~~~~i~sl~v~~dgsml~a~nnkG~ 190 (311)
T KOG0315|consen 135 NQTELISGDQSGNIRVWDLGENSC----------------------THELIPE--DDTSIQSLTVMPDGSMLAAANNKGN 190 (311)
T ss_pred CcceEEeecCCCcEEEEEccCCcc----------------------ccccCCC--CCcceeeEEEcCCCcEEEEecCCcc
Confidence 999999999999999999864321 1112222 567899999999999999998 599
Q ss_pred EEEEEcCCC------ceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecc-eEEEEecCcccCeeEEEEecC
Q 001295 833 ISLFNMMTF------KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHSKRITGLAFSHA 905 (1106)
Q Consensus 833 i~vwd~~~~------~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~s~d 905 (1106)
.++|++-+. ..+..++.|.+.+..+.+|| |+++||+++.|.+++||+.++. +.-..+++|..-++..+||.|
T Consensus 191 cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~d 269 (311)
T KOG0315|consen 191 CYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSAD 269 (311)
T ss_pred EEEEEccCCCccccceEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccC
Confidence 999998653 34456788999999999999 9999999999999999999987 666788999999999999999
Q ss_pred CCEEEEEcCCCcEEEEeCCCccc
Q 001295 906 LNVLVSSGADSQLCVWSSDGWEK 928 (1106)
Q Consensus 906 ~~~l~s~s~Dg~i~vwd~~~~~~ 928 (1106)
|.+|++|+.|+++++|++..++.
T Consensus 270 g~YlvTassd~~~rlW~~~~~k~ 292 (311)
T KOG0315|consen 270 GEYLVTASSDHTARLWDLSAGKE 292 (311)
T ss_pred ccEEEecCCCCceeecccccCce
Confidence 99999999999999999998763
No 40
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1e-33 Score=271.09 Aligned_cols=294 Identities=20% Similarity=0.321 Sum_probs=241.0
Q ss_pred ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295 407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 486 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 486 (1106)
.+.+|++.|+.+.|+|+|.+||+|+.|..|.+|++.... ....++++|++.|..+.|.+|+. .++++|.|++|+.|
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGW 117 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEEE
Confidence 578999999999999999999999999999999986543 23446889999999999999999 89999999999999
Q ss_pred eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeec
Q 001295 487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 566 (1106)
Q Consensus 487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 566 (1106)
|+++|++++.+++|..-|++++.. ..+-.++.+++.||++++||+++.+.+.++.. ...++++.|
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f------------- 182 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGF------------- 182 (338)
T ss_pred ecccceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEe-------------
Confidence 999999999999999999999843 23336788899999999999998776655432 223444444
Q ss_pred cceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhh
Q 001295 567 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 646 (1106)
Q Consensus 567 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 646 (1106)
...+..+++|+-|+.|++||++.+.....+.+| .+.|+.+..+++|.++.+-+.|.++++||++.-....
T Consensus 183 --------~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh--~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~ 252 (338)
T KOG0265|consen 183 --------KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGH--ADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQ 252 (338)
T ss_pred --------cccccceeeccccCceeeeccccCcceEEeecc--cCceeeEEeccCCCccccccccceEEEEEecccCCCC
Confidence 444457999999999999999999999999977 4589999999999999999999999999985320000
Q ss_pred hhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCC
Q 001295 647 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 726 (1106)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 726 (1106)
..+.++.
T Consensus 253 ---------------------------------------------------------------------R~v~if~---- 259 (338)
T KOG0265|consen 253 ---------------------------------------------------------------------RCVKIFQ---- 259 (338)
T ss_pred ---------------------------------------------------------------------ceEEEee----
Confidence 0011000
Q ss_pred CCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCC
Q 001295 727 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 806 (1106)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 806 (1106)
+..
T Consensus 260 -----------------------------------g~~------------------------------------------ 262 (338)
T KOG0265|consen 260 -----------------------------------GHI------------------------------------------ 262 (338)
T ss_pred -----------------------------------cch------------------------------------------
Confidence 000
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEE
Q 001295 807 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 880 (1106)
Q Consensus 807 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd 880 (1106)
.+.......++|+|++..+.+|+ |..+++||..+...+..+.+|.+.|.+++|+| ...+|.+++.|.+|++=.
T Consensus 263 hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp-~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 263 HNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP-TEPIILSCSSDKTIYLGE 336 (338)
T ss_pred hhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC-CCcEEEEeccCceeEeec
Confidence 00122345678999999999998 99999999999999999999999999999999 889999999999998743
No 41
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-31 Score=290.92 Aligned_cols=448 Identities=15% Similarity=0.262 Sum_probs=316.9
Q ss_pred CCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeC
Q 001295 409 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA 488 (1106)
Q Consensus 409 ~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 488 (1106)
...+..|..++|+|...+++++-..|.|++||.+-+.++. .|.+|.++|..++|+|.+. +|+|||+|..|+||+.
T Consensus 6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWNY 80 (1202)
T ss_pred hcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEec
Confidence 4456789999999999999999999999999999888776 6889999999999999999 9999999999999999
Q ss_pred CCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccc
Q 001295 489 TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 568 (1106)
Q Consensus 489 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~ 568 (1106)
.+.+++.++.||.+.|..+.|++.. .+++++|.|.+|++|++.+..++..+.+|.+-|.+..|.|...
T Consensus 81 k~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED---------- 148 (1202)
T KOG0292|consen 81 KTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED---------- 148 (1202)
T ss_pred ccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccc----------
Confidence 9999999999999999999998776 6999999999999999999999999999999888777766443
Q ss_pred eeEEEEcCCCCEEEEEECCCeEEEEECCCcce---------------------------eEEEccCCCCCCcCeEEEccC
Q 001295 569 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL---------------------------LTSIDADGGLPASPRIRFNKD 621 (1106)
Q Consensus 569 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---------------------------~~~~~~~~~~~~v~~v~~s~~ 621 (1106)
.+++++-|.+||+||+..-+. +-.+-..+|...|+-++|+|.
T Consensus 149 -----------lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpT 217 (1202)
T KOG0292|consen 149 -----------LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPT 217 (1202)
T ss_pred -----------eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCC
Confidence 799999999999999853211 111112233446777888888
Q ss_pred CCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCcc
Q 001295 622 GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVR 701 (1106)
Q Consensus 622 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1106)
-.++++|++|..|++|.....
T Consensus 218 lpliVSG~DDRqVKlWrmnet----------------------------------------------------------- 238 (1202)
T KOG0292|consen 218 LPLIVSGADDRQVKLWRMNET----------------------------------------------------------- 238 (1202)
T ss_pred cceEEecCCcceeeEEEeccc-----------------------------------------------------------
Confidence 888888888888888865432
Q ss_pred ccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCC
Q 001295 702 SLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSG 781 (1106)
Q Consensus 702 ~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 781 (1106)
+.|.++. + ++|.+.|.++.|+|..+.+++.+.|++|+|||+....
T Consensus 239 -----------------KaWEvDt------c-------rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt----- 283 (1202)
T KOG0292|consen 239 -----------------KAWEVDT------C-------RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT----- 283 (1202)
T ss_pred -----------------cceeehh------h-------hcccCCcceEEecCccceeEecCCCccEEEEeccccc-----
Confidence 2333332 1 4599999999999999999999999999999986321
Q ss_pred ccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEec
Q 001295 782 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHP 861 (1106)
Q Consensus 782 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~ 861 (1106)
.+.. ++. ....-+.++..|..+++++|.|+.+.||-++.... + .+.+
T Consensus 284 -----------------~v~t-frr--endRFW~laahP~lNLfAAgHDsGm~VFkleRErp----------a--~~v~- 330 (1202)
T KOG0292|consen 284 -----------------SVQT-FRR--ENDRFWILAAHPELNLFAAGHDSGMIVFKLERERP----------A--YAVN- 330 (1202)
T ss_pred -----------------ceee-eec--cCCeEEEEEecCCcceeeeecCCceEEEEEcccCc----------e--EEEc-
Confidence 1111 111 46678899999999999999998888887764332 2 2233
Q ss_pred CCCceEEEeeCCCcEEEEEeecce--EEEEecCc---ccCeeEEEEecCCCEE-EEEcCC-CcEEEEeCCCcccccceee
Q 001295 862 QDNNIIAIGMDDSSIQIYNVRVDE--VKSKLKGH---SKRITGLAFSHALNVL-VSSGAD-SQLCVWSSDGWEKQKNRFL 934 (1106)
Q Consensus 862 ~d~~~la~g~~dg~v~iwd~~~~~--~~~~l~~h---~~~V~~l~~s~d~~~l-~s~s~D-g~i~vwd~~~~~~~~~~~~ 934 (1106)
++.++.+ .|..|+-+|+.+.+ .+..++.. -.++.++.++|-...+ ++...| +.--++.+...........
T Consensus 331 -~n~LfYv--kd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~ 407 (1202)
T KOG0292|consen 331 -GNGLFYV--KDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGK 407 (1202)
T ss_pred -CCEEEEE--ccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCch
Confidence 3334443 38899999998844 34445543 3678899999976544 443333 4444555443211000000
Q ss_pred cccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEE
Q 001295 935 QIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV 1013 (1106)
Q Consensus 935 ~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~v 1013 (1106)
.... +.-....|-..+++.+.. ++.++.+-++.+... +.+.. ...+..|-+.-+|.+|+.. ...|.+
T Consensus 408 ~~~k------~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vt-kkl~~---~~~~~~IF~ag~g~lll~~--~~~v~l 475 (1202)
T KOG0292|consen 408 DVKK------GTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVT-KKLLL---PESTDDIFYAGTGNLLLRS--PDSVTL 475 (1202)
T ss_pred hhhc------CCCCceEEEEecceEEEEecCcceEEecccchhh-hcccC---cccccceeeccCccEEEEc--CCeEEE
Confidence 0000 011222333333333332 344455555443222 22211 2245566666677766643 567999
Q ss_pred EEcCCceeEEeeC
Q 001295 1014 FSAANLKLRCRIN 1026 (1106)
Q Consensus 1014 wd~~~~~~~~~~~ 1026 (1106)
||++.++.+..+.
T Consensus 476 fdvQq~~~~~si~ 488 (1202)
T KOG0292|consen 476 FDVQQKKKVGSIK 488 (1202)
T ss_pred EEeecceEEEEEe
Confidence 9999998888776
No 42
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.3e-34 Score=284.23 Aligned_cols=291 Identities=18% Similarity=0.297 Sum_probs=231.8
Q ss_pred ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295 407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 486 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 486 (1106)
++..|.+.|+-+.||++|+|||+++.|.+..||++.....++..+++.+|..+|..+.||||++ ++++|+.|..+.+|
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW 296 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence 6889999999999999999999999999999999987766777789999999999999999999 89999999999999
Q ss_pred eCCCCceeEEEe-ccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeee
Q 001295 487 DATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 565 (1106)
Q Consensus 487 d~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~ 565 (1106)
|+.+|.+...+. +|...+.+++|.|+ |..+++|+.|+++..||++
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~pD--g~~~V~Gs~dr~i~~wdlD-------------------------------- 342 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCPD--GFRFVTGSPDRTIIMWDLD-------------------------------- 342 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEccC--CceeEecCCCCcEEEecCC--------------------------------
Confidence 999999877664 23455666665433 3456666666655555543
Q ss_pred ccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchh
Q 001295 566 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 645 (1106)
Q Consensus 566 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 645 (1106)
|..+...++-. ...|.+++.++||+++++.+.|..|++++..+...
T Consensus 343 --------------------------------gn~~~~W~gvr-~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d- 388 (519)
T KOG0293|consen 343 --------------------------------GNILGNWEGVR-DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD- 388 (519)
T ss_pred --------------------------------cchhhcccccc-cceeEEEEEcCCCcEEEEEecccceeeechhhhhh-
Confidence 12222222211 23588899999999999999999999997644300
Q ss_pred hhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCC
Q 001295 646 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 725 (1106)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 725 (1106)
..
T Consensus 389 r~------------------------------------------------------------------------------ 390 (519)
T KOG0293|consen 389 RG------------------------------------------------------------------------------ 390 (519)
T ss_pred hc------------------------------------------------------------------------------
Confidence 00
Q ss_pred CCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccC
Q 001295 726 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 805 (1106)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 805 (1106)
+
T Consensus 391 --------------------------------l----------------------------------------------- 391 (519)
T KOG0293|consen 391 --------------------------------L----------------------------------------------- 391 (519)
T ss_pred --------------------------------c-----------------------------------------------
Confidence 0
Q ss_pred CCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCC--eeEEEEecCCCceEEEeeCCCcEEEEEee
Q 001295 806 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDDSSIQIYNVR 882 (1106)
Q Consensus 806 ~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~--v~~l~~s~~d~~~la~g~~dg~v~iwd~~ 882 (1106)
.....+|++++.|.|++++++.- +..|++||++..+.++.+.||... +..-+|-..+..++|+|++|+.|+||+..
T Consensus 392 -ise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~ 470 (519)
T KOG0293|consen 392 -ISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRI 470 (519)
T ss_pred -ccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEcc
Confidence 00345677888888888777776 788999999988889999998764 55556766466899999999999999999
Q ss_pred cceEEEEecCcccCeeEEEEecCC-CEEEEEcCCCcEEEEeCCC
Q 001295 883 VDEVKSKLKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSSDG 925 (1106)
Q Consensus 883 ~~~~~~~l~~h~~~V~~l~~s~d~-~~l~s~s~Dg~i~vwd~~~ 925 (1106)
+|+++.++.||+..|++|+|+|.. .++||||+||+|+||....
T Consensus 471 sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 471 SGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999999999999999999964 6799999999999998765
No 43
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.3e-30 Score=274.86 Aligned_cols=503 Identities=13% Similarity=0.168 Sum_probs=350.1
Q ss_pred CcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccc-cCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC
Q 001295 412 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 490 (1106)
Q Consensus 412 ~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h-~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 490 (1106)
..+|.+||||.+.+.||.+-.||.|-||++..+=.... ++.++ ...|.+++|++.++ |.|.+.+|+|.-||+.+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLHT 99 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCCe---EEeecCCceEEEEeccc
Confidence 34899999999999999999999999999998644333 45554 56899999996665 88999999999999999
Q ss_pred CceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeE--eeCCCCeeEEEEEecCCCeEEEeeeccc
Q 001295 491 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD--YEAPGRWCTTMAYSADGTRTYQGFRKRS 568 (1106)
Q Consensus 491 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~~~~~~~~~~ 568 (1106)
++.+..+....+.|++++.++.. ..++.|+.||.+..++......... +..... .
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~s---------------------R 156 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKS---------------------R 156 (691)
T ss_pred CceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccc---------------------e
Confidence 99999999999999999987765 5899999999777776655433321 111222 4
Q ss_pred eeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEc-----cCC-CCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 569 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-----ADG-GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 569 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~-~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
+.++.|+|++..+++|+.||.|++||..++..+.... ... ...-|+++.|-.+ ..|++|...|+|.+||...+
T Consensus 157 vLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~g 235 (691)
T KOG2048|consen 157 VLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFG 235 (691)
T ss_pred EEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCc
Confidence 5556666666689999999999999999998777322 111 2223556666644 46788888899999988777
Q ss_pred chhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEe
Q 001295 643 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 722 (1106)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~ 722 (1106)
.+++.+.
T Consensus 236 -TLiqS~~------------------------------------------------------------------------ 242 (691)
T KOG2048|consen 236 -TLIQSHS------------------------------------------------------------------------ 242 (691)
T ss_pred -chhhhhh------------------------------------------------------------------------
Confidence 4433332
Q ss_pred cCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccc
Q 001295 723 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 802 (1106)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 802 (1106)
.|...|.+++.++++++++++|.|+.+..|...+.... |-....
T Consensus 243 ------------------~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-------------wv~~~~----- 286 (691)
T KOG2048|consen 243 ------------------CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE-------------WVINSR----- 286 (691)
T ss_pred ------------------hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc-------------eeeecc-----
Confidence 26778999999999999999999998888776532110 221111
Q ss_pred ccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeE-EEEecCCCceEEEeeCCCcEEEEE
Q 001295 803 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATF-LAFHPQDNNIIAIGMDDSSIQIYN 880 (1106)
Q Consensus 803 ~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~-l~~s~~d~~~la~g~~dg~v~iwd 880 (1106)
...|...|.+++..++ .+++|+ |.++.+-.....+..........+-.+ +...| .++|..--.+..+.+|.
T Consensus 287 ---r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwr 359 (691)
T KOG2048|consen 287 ---RDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAP--ENRLLVLWKAHGVDLWR 359 (691)
T ss_pred ---ccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCc--cceEEEEecccccccee
Confidence 1238899999999887 777777 888777665542222111100111111 22233 34555555577788888
Q ss_pred eecce---------EEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEE
Q 001295 881 VRVDE---------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 951 (1106)
Q Consensus 881 ~~~~~---------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 951 (1106)
+.+.- +++-...-...|.+.+.||||++|+.+.-- .++||.+..........+. ...........+.
T Consensus 360 lGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~~v~---~~~~~~~~a~~i~ 435 (691)
T KOG2048|consen 360 LGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKVINVD---DVPLALLDASAIS 435 (691)
T ss_pred ccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeEEEec---cchhhhccceeeE
Confidence 76541 122222233558999999999999987643 4788888764322222111 1111113567889
Q ss_pred EcCCCcEEEE-E-eCCeEEEEecCCceEe--eecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCC
Q 001295 952 FHQDQIHFLV-V-HETQLAIFETTKLECV--KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP 1027 (1106)
Q Consensus 952 ~s~dg~~l~~-~-~d~~v~i~d~~~~~~~--~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~ 1027 (1106)
|+-|+..++. + ....+.++++++.... ..+...+-...|..|..|+||+|||+.+.+|.|.+|++.+++.......
T Consensus 436 ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~r 515 (691)
T KOG2048|consen 436 FTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVR 515 (691)
T ss_pred EEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhc
Confidence 9988877776 4 6678888888765432 3333223367899999999999999999999999999999877654420
Q ss_pred CcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295 1028 SAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus 1028 ~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
++ ....+++|+|.+.+.|+.+..|+.|+-+|++..+
T Consensus 516 ---ln-------~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 516 ---LN-------IDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARN 551 (691)
T ss_pred ---cC-------cceeeeeccccccCcEEEEecCCeEEEEecchhh
Confidence 11 2233788897778889999999999999995443
No 44
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.7e-33 Score=268.17 Aligned_cols=256 Identities=18% Similarity=0.236 Sum_probs=218.9
Q ss_pred CCcceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcc-eeEEeeeeeeccCcCCccccccccCCCCcCeEE
Q 001295 339 LPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE-RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 417 (1106)
Q Consensus 339 ~~~~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~ 417 (1106)
+........+|+++|..+.|+|+|. ++|+|+.|..|.+|++.... ... .+++|++.|..
T Consensus 36 l~ap~m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~~-------------------~lkgHsgAVM~ 95 (338)
T KOG0265|consen 36 LQAPIMLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENFW-------------------VLKGHSGAVME 95 (338)
T ss_pred ccchhhhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEecccccccee-------------------eeccccceeEe
Confidence 3445566677999999999999999 59999999999999975332 222 47899999999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEE
Q 001295 418 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 497 (1106)
Q Consensus 418 l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 497 (1106)
+.|.+|++.|++++.|++|+.||+++|++++ .+++|..-|+.+.-+.-|.. ++.|++.|+++++||+++..+++++
T Consensus 96 l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~ 171 (338)
T KOG0265|consen 96 LHGMRDGSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTF 171 (338)
T ss_pred eeeccCCCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhcc
Confidence 9999999999999999999999999999877 68899999999997766776 7899999999999999999988888
Q ss_pred eccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCC
Q 001295 498 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 577 (1106)
Q Consensus 498 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~ 577 (1106)
. ..-.++++.|... +..+++|+-|+.|++||++.......+.+|...|+.+..+++|.
T Consensus 172 ~-~kyqltAv~f~d~--s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs------------------- 229 (338)
T KOG0265|consen 172 E-NKYQLTAVGFKDT--SDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGS------------------- 229 (338)
T ss_pred c-cceeEEEEEeccc--ccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCC-------------------
Confidence 6 4567889998544 46899999999999999999999999999999888888888776
Q ss_pred CCEEEEEECCCeEEEEECCC----cceeEEEccCCCCCC--cCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 578 KNRFLAAGDDFSIKFWDMDS----VQLLTSIDADGGLPA--SPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 578 ~~~l~~~~~d~~i~iwd~~~----~~~~~~~~~~~~~~~--v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
++++-+.|.++++||++- .+++..+.++.+... ...++|+|++..+..|+.|..+++||....
T Consensus 230 --~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 230 --FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred --ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc
Confidence 789999999999999864 345777777655433 346899999999999999999999997553
No 45
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.2e-29 Score=269.55 Aligned_cols=499 Identities=15% Similarity=0.154 Sum_probs=359.7
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCcccccccc-CCCCcCeEEEEEccCCCEE
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALV-KDPGVSVNRVIWSPDGSLF 427 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~h~~~V~~l~~spdg~~l 427 (1106)
...+|.++|||.+.+. ||.+-.+|.|.||++..+-.... ++ .+....|..++|+ ++..|
T Consensus 24 ~Ps~I~slA~s~kS~~-lAvsRt~g~IEiwN~~~~w~~~~------------------vi~g~~drsIE~L~W~-e~~RL 83 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQ-LAVSRTDGNIEIWNLSNNWFLEP------------------VIHGPEDRSIESLAWA-EGGRL 83 (691)
T ss_pred eccceEEEEEeccCCc-eeeeccCCcEEEEccCCCceeeE------------------EEecCCCCceeeEEEc-cCCeE
Confidence 3578999999999995 99999999999999987544321 23 3445689999999 45567
Q ss_pred EEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeE--EEeccCCCeE
Q 001295 428 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--IFEGHEAPVY 505 (1106)
Q Consensus 428 as~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~h~~~v~ 505 (1106)
.+.+.+|+|.-||+.+++... .+....+.|++++.+|.++ .++.|++||.+...+...++..+ .|...++.|.
T Consensus 84 FS~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL 158 (691)
T KOG2048|consen 84 FSSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL 158 (691)
T ss_pred EeecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccceEE
Confidence 788899999999999987665 5677788999999999998 78999999988888888777654 4555678999
Q ss_pred EEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeC--------CCCeeEEEEEecCCCeEEEeeeccceeEEEEcCC
Q 001295 506 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--------PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 577 (1106)
Q Consensus 506 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~ 577 (1106)
++.|+++ +..+++|+.||.|++||...+........ ..--|.++.|-.++.
T Consensus 159 slsw~~~--~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t------------------- 217 (691)
T KOG2048|consen 159 SLSWNPT--GTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST------------------- 217 (691)
T ss_pred EEEecCC--ccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-------------------
Confidence 9998654 46799999999999999998766552111 122345555555554
Q ss_pred CCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccc
Q 001295 578 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS 657 (1106)
Q Consensus 578 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 657 (1106)
+++|...|+|.+||...+.++..+..+. ..|.+++..+++.++++++-|+.|.-+...++...
T Consensus 218 ---I~sgDS~G~V~FWd~~~gTLiqS~~~h~--adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~------------ 280 (691)
T KOG2048|consen 218 ---IASGDSAGTVTFWDSIFGTLIQSHSCHD--ADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE------------ 280 (691)
T ss_pred ---EEEecCCceEEEEcccCcchhhhhhhhh--cceeEEEEcCCCCeEEEccCCCceEEEEecCCccc------------
Confidence 9999999999999999999999998774 47999999999999999999999988876655210
Q ss_pred cCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceeccc
Q 001295 658 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL 737 (1106)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~ 737 (1106)
|-.. .
T Consensus 281 ---------------------------------------------------------------wv~~------------~ 285 (691)
T KOG2048|consen 281 ---------------------------------------------------------------WVIN------------S 285 (691)
T ss_pred ---------------------------------------------------------------eeee------------c
Confidence 1000 0
Q ss_pred CccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEE
Q 001295 738 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 817 (1106)
Q Consensus 738 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~ 817 (1106)
....|...|.+++..++ .+++++.|.++.+-......+ .+ -..... .... .-+.
T Consensus 286 ~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~--------------~~---h~~~~~-----~p~~--~~v~ 339 (691)
T KOG2048|consen 286 RRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKN--------------MD---HRQKNL-----FPAS--DRVS 339 (691)
T ss_pred cccCCcccceeeeeecc--eEEecceeeEEEEccccccCc--------------hh---hhcccc-----cccc--ceee
Confidence 01237788889988888 688999998888754321100 00 000000 0111 1133
Q ss_pred EecCCCEEEEEeCCeEEEEEcCCCcee---------eeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEE-
Q 001295 818 LSKNDSYVMSASGGKISLFNMMTFKTM---------ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK- 887 (1106)
Q Consensus 818 ~s~~~~~l~~~sdg~i~vwd~~~~~~~---------~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~- 887 (1106)
..+..++++.-....+.+|.+.+.... +........|.+.+.|| +|++||.+. -..++||.++....+
T Consensus 340 ~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~Ia~st-~~~~~iy~L~~~~~vk 417 (691)
T KOG2048|consen 340 VAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGNLIAIST-VSRTKIYRLQPDPNVK 417 (691)
T ss_pred cCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCCEEEEee-ccceEEEEeccCccee
Confidence 344455555555788888988654211 22223455699999999 999999876 357888888752221
Q ss_pred ----EEecCcccCeeEEEEecCCCEEEEEc-CCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-
Q 001295 888 ----SKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV- 961 (1106)
Q Consensus 888 ----~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~- 961 (1106)
.......-.+..+.|+-|+..++.++ .+..+.+.++++........++.. .....|..++.||+|+++|+
T Consensus 418 ~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~----~~~~~I~~l~~SsdG~yiaa~ 493 (691)
T KOG2048|consen 418 VINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ----AKCPSISRLVVSSDGNYIAAI 493 (691)
T ss_pred EEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc----cCCCcceeEEEcCCCCEEEEE
Confidence 11222334567889999998888888 677888888877543222111111 22358899999999999999
Q ss_pred EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECC-CCCEEEEEEcCCeEEEEEcCCc
Q 001295 962 VHETQLAIFETTKLECVKQWVPRESSAPITHATFSC-DSQLVYACFLDATVCVFSAANL 1019 (1106)
Q Consensus 962 ~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~-d~~~l~t~s~Dg~i~vwd~~~~ 1019 (1106)
+.++.|.+|++++++...... .-...|+.++|+| +...|+.+..|+.|.=||++..
T Consensus 494 ~t~g~I~v~nl~~~~~~~l~~--rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~ 550 (691)
T KOG2048|consen 494 STRGQIFVYNLETLESHLLKV--RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEAR 550 (691)
T ss_pred eccceEEEEEcccceeecchh--ccCcceeeeeccccccCcEEEEecCCeEEEEecchh
Confidence 689999999999887654442 2247899999995 5567888889999999999543
No 46
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.4e-32 Score=256.06 Aligned_cols=245 Identities=20% Similarity=0.336 Sum_probs=195.8
Q ss_pred eccCCCCcEEEEEecC-CCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCC
Q 001295 346 TLNQGSSPMSMDFHPV-QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 424 (1106)
Q Consensus 346 ~~~h~~~v~~~~~sp~-g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 424 (1106)
+-+|++.|+.++|+|- |. +||+++.|+.|+||+...+.....+ ..+-.+|+..|+.++|+|.|
T Consensus 10 ~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~ck---------------~vld~~hkrsVRsvAwsp~g 73 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTCK---------------TVLDDGHKRSVRSVAWSPHG 73 (312)
T ss_pred ecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEEE---------------EeccccchheeeeeeecCCC
Confidence 3459999999999998 77 7999999999999999853222111 11236899999999999999
Q ss_pred CEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC---ceeEEEeccC
Q 001295 425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AKQYIFEGHE 501 (1106)
Q Consensus 425 ~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~h~ 501 (1106)
++||++|.|.++.||.-..++ .....+++||...|.|++|+++|. +||+++.|++|-||.+..+ .++..+++|.
T Consensus 74 ~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~~Ht 150 (312)
T KOG0645|consen 74 RYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQEHT 150 (312)
T ss_pred cEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeecccc
Confidence 999999999999999877654 456778999999999999999999 8999999999999998744 4678899999
Q ss_pred CCeEEEeccccCCceEEEEEecCCeEEEEeCCCC---CceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCC
Q 001295 502 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 578 (1106)
Q Consensus 502 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~ 578 (1106)
..|..+.|+|+. .+|++++.|++|++|+-... ....++.++... +.++.|++.|
T Consensus 151 qDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~T---------------------VW~~~F~~~G 207 (312)
T KOG0645|consen 151 QDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENT---------------------VWSLAFDNIG 207 (312)
T ss_pred ccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccce---------------------EEEEEecCCC
Confidence 999999999987 58999999999999976521 233444555444 4445555555
Q ss_pred CEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEcc
Q 001295 579 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 640 (1106)
Q Consensus 579 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 640 (1106)
..+++++.|++|+||-..+. +. ..+...+..++|. ...|++++.|+.|+++...
T Consensus 208 ~rl~s~sdD~tv~Iw~~~~~-----~~-~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 208 SRLVSCSDDGTVSIWRLYTD-----LS-GMHSRALYDVPWD--NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred ceEEEecCCcceEeeeeccC-----cc-hhcccceEeeeec--ccceEeccCCCEEEEEEec
Confidence 57999999999999986532 11 1223457778887 5689999999999999654
No 47
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=9.7e-34 Score=307.03 Aligned_cols=274 Identities=15% Similarity=0.209 Sum_probs=234.3
Q ss_pred cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295 742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 821 (1106)
Q Consensus 742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 821 (1106)
....+++..|++|+..++.+..|..|++|.+...+..+ ++ +.. +
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~------------------------lk---~~~---------~ 420 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKK------------------------LK---DAS---------D 420 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhcc------------------------cc---chh---------h
Confidence 44678999999999999999999999999875321100 00 011 0
Q ss_pred CCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEE
Q 001295 822 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 900 (1106)
Q Consensus 822 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 900 (1106)
...+=+.+ |-.+.+.|-.+....+++.+|.++|..+.|+| +.++|+++++|++||+|.+.+..++-..+||..+|+.+
T Consensus 421 l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV 499 (707)
T KOG0263|consen 421 LSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDV 499 (707)
T ss_pred hccccccccchhhhhccccCCceeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeE
Confidence 11111222 33366667777777788999999999999999 99999999999999999999999999999999999999
Q ss_pred EEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCceEee
Q 001295 901 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVK 979 (1106)
Q Consensus 901 ~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~~~~ 979 (1106)
.|+|-|-++||+|.|++.++|..+.. ..+.++.||.. .|.|+.|+|++.|+++ +.|.+|++||+.+|..++
T Consensus 500 ~F~P~GyYFatas~D~tArLWs~d~~-----~PlRifaghls---DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR 571 (707)
T KOG0263|consen 500 QFAPRGYYFATASHDQTARLWSTDHN-----KPLRIFAGHLS---DVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR 571 (707)
T ss_pred EecCCceEEEecCCCceeeeeecccC-----Cchhhhccccc---ccceEEECCcccccccCCCCceEEEEEcCCCcEEE
Confidence 99999999999999999999999873 45777888875 8999999999999999 589999999999999999
Q ss_pred ecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEe
Q 001295 980 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1059 (1106)
Q Consensus 980 ~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~ 1059 (1106)
.|. ||.++|++++|||+|++|++|++||.|.+||+.+++++..+. +| .+.+. ++.|+. ||..||+|+
T Consensus 572 iF~--GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~-------~H-t~ti~--SlsFS~-dg~vLasgg 638 (707)
T KOG0263|consen 572 IFT--GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK-------GH-TGTIY--SLSFSR-DGNVLASGG 638 (707)
T ss_pred Eec--CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh-------cc-cCcee--EEEEec-CCCEEEecC
Confidence 997 899999999999999999999999999999999999998887 55 44477 899998 799999999
Q ss_pred CCCcEEEEeecCCC
Q 001295 1060 SDGGVHVFEPLESE 1073 (1106)
Q Consensus 1060 ~Dg~v~vW~~~~~~ 1073 (1106)
.|++|++||+..-.
T Consensus 639 ~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 639 ADNSVRLWDLTKVI 652 (707)
T ss_pred CCCeEEEEEchhhc
Confidence 99999999997666
No 48
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=9.7e-33 Score=269.65 Aligned_cols=294 Identities=16% Similarity=0.318 Sum_probs=246.5
Q ss_pred ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295 407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 486 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 486 (1106)
++.+|.+.|.|+++.|-.++|++|+.|++|+|||+.+|+... ++.||...|..+++|+-.. |+++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 589999999999999999999999999999999999998654 7899999999999999888 89999999999999
Q ss_pred eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeec
Q 001295 487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 566 (1106)
Q Consensus 487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 566 (1106)
|++..+.++.+.||-..|.+++.+|.- ..|++|+.|.++++||+++...+..+.+|...|.++.+.|-..
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp-------- 290 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDP-------- 290 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCC--------
Confidence 999999999999999999999998876 5899999999999999999999999999998888777765433
Q ss_pred cceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhh
Q 001295 567 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 646 (1106)
Q Consensus 567 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 646 (1106)
.+++|+.|++|++||+..|+...++..|.. .|.+++.+|....+|+++.| .|+-|++..+ ..+
T Consensus 291 -------------qvit~S~D~tvrlWDl~agkt~~tlt~hkk--svral~lhP~e~~fASas~d-nik~w~~p~g-~f~ 353 (460)
T KOG0285|consen 291 -------------QVITGSHDSTVRLWDLRAGKTMITLTHHKK--SVRALCLHPKENLFASASPD-NIKQWKLPEG-EFL 353 (460)
T ss_pred -------------ceEEecCCceEEEeeeccCceeEeeecccc--eeeEEecCCchhhhhccCCc-cceeccCCcc-chh
Confidence 599999999999999999999999887744 79999999999999999886 6788888776 222
Q ss_pred hhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCC
Q 001295 647 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 726 (1106)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 726 (1106)
..+.
T Consensus 354 ~nls---------------------------------------------------------------------------- 357 (460)
T KOG0285|consen 354 QNLS---------------------------------------------------------------------------- 357 (460)
T ss_pred hccc----------------------------------------------------------------------------
Confidence 2222
Q ss_pred CCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCC
Q 001295 727 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 806 (1106)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 806 (1106)
+|...|.+++...|+ ++++|+++|.+..||+..+-....+.... .-|.
T Consensus 358 --------------gh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~v---------qpGS-------- 405 (460)
T KOG0285|consen 358 --------------GHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIV---------QPGS-------- 405 (460)
T ss_pred --------------cccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccc---------cCCc--------
Confidence 366777888888777 47888889999999987543211111100 0011
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCC
Q 001295 807 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT 840 (1106)
Q Consensus 807 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~ 840 (1106)
......|.+.+|...|..|++|. |.+|++|.-..
T Consensus 406 l~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 406 LESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred cccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 12466799999999999999998 99999997543
No 49
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=6.7e-31 Score=268.27 Aligned_cols=436 Identities=17% Similarity=0.237 Sum_probs=320.3
Q ss_pred CCcceeeecc-CCCCcEEEEEecC--CCeEEEEE-eccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcC
Q 001295 339 LPKTVTRTLN-QGSSPMSMDFHPV--QQTLLLVG-TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVS 414 (1106)
Q Consensus 339 ~~~~~~~~~~-h~~~v~~~~~sp~--g~~llatg-~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~ 414 (1106)
..-..++.++ -...|+|++||+- |.+|++.- +.+.-+.|||+..+..... .+.-+..
T Consensus 142 v~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~-------------------vk~sne~ 202 (626)
T KOG2106|consen 142 VTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGP-------------------VKTSNEV 202 (626)
T ss_pred ccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCc-------------------ceeccce
Confidence 3444556666 6689999999984 44433332 2345688999988766542 3445668
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeecccc-CCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCce
Q 001295 415 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 493 (1106)
Q Consensus 415 V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~-~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 493 (1106)
|....|.|.+.-|+.....+.+.+|+.+++...+....++++. ..|.|++|.++|. ++||..+|.|.||+..+.+.
T Consensus 203 v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~ 279 (626)
T KOG2106|consen 203 VFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRI 279 (626)
T ss_pred EEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceE
Confidence 9999999955555555456889999999998877666666543 5799999999998 89999999999999888887
Q ss_pred eEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEe--eCCCCeeEEEEEec----------------
Q 001295 494 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY--EAPGRWCTTMAYSA---------------- 555 (1106)
Q Consensus 494 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s~---------------- 555 (1106)
.+....|.+.|.+++... +| .|++|+.|..|..|| ...+.+... +...+.+..++-..
T Consensus 280 ~k~~~aH~ggv~~L~~lr--~G-tllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt 355 (626)
T KOG2106|consen 280 SKQVHAHDGGVFSLCMLR--DG-TLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGT 355 (626)
T ss_pred EeEeeecCCceEEEEEec--Cc-cEeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEee
Confidence 777779999999999644 43 577799999999999 333333322 22223333332111
Q ss_pred ---CCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCC
Q 001295 556 ---DGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 632 (1106)
Q Consensus 556 ---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 632 (1106)
.-..+..||.+ ..+.++.+|+.+++++++.|+.+++|+ ..+++.+.... .++.|+.|+|.| .++.|+..|
T Consensus 356 ~~~~f~~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~---d~~~~~~fhpsg-~va~Gt~~G 428 (626)
T KOG2106|consen 356 LENGFTLTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE---DPAECADFHPSG-VVAVGTATG 428 (626)
T ss_pred ecCCceEEEEeccc-ceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEec---CceeEeeccCcc-eEEEeeccc
Confidence 11123344444 788899999999999999999999999 44555444332 357899999999 999999999
Q ss_pred cEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccc
Q 001295 633 GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITE 712 (1106)
Q Consensus 633 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 712 (1106)
...+.|.++. ..+..-
T Consensus 429 ~w~V~d~e~~-~lv~~~--------------------------------------------------------------- 444 (626)
T KOG2106|consen 429 RWFVLDTETQ-DLVTIH--------------------------------------------------------------- 444 (626)
T ss_pred eEEEEecccc-eeEEEE---------------------------------------------------------------
Confidence 9999998764 211100
Q ss_pred cCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCcccc
Q 001295 713 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLW 792 (1106)
Q Consensus 713 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w 792 (1106)
....+++.++|+|+|.+|++++.|+.|+||.++.+.
T Consensus 445 ----------------------------~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g---------------- 480 (626)
T KOG2106|consen 445 ----------------------------TDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG---------------- 480 (626)
T ss_pred ----------------------------ecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC----------------
Confidence 024678999999999999999999999999887422
Q ss_pred CCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeee------------------cCCCCC
Q 001295 793 QPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF------------------MPPPPA 853 (1106)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~------------------~~~~~~ 853 (1106)
+.....- ..+..+|+.+.||+|++++.+-+ |-.|..|.....+..... -.+...
T Consensus 481 -----~~y~r~~--k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~ 553 (626)
T KOG2106|consen 481 -----RKYSRVG--KCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTD 553 (626)
T ss_pred -----cEEEEee--eecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCch
Confidence 2111111 11458899999999999999998 888999954332221111 124455
Q ss_pred eeEEEEecCCCceEEEeeCCCcEEEEEeecce---EEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeC
Q 001295 854 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 923 (1106)
Q Consensus 854 v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~---~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~ 923 (1106)
|..++-+. +.+++|+|.+.|.|++|...-.+ ...++.+|++-|++++|.-+...|++.+.|..|..|++
T Consensus 554 i~a~~rs~-~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 554 INAVARSH-CEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred HHHhhhhh-hhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 77777887 88999999999999999875432 34677899999999999998889998889999999986
No 50
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.3e-31 Score=252.93 Aligned_cols=293 Identities=16% Similarity=0.231 Sum_probs=237.5
Q ss_pred cccccceEEEEEcCC-CceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEE
Q 001295 740 NLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL 818 (1106)
Q Consensus 740 ~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~ 818 (1106)
.+|.+++..++++|- |..|++++.|..|++|+..... -|. +.. ....+|...|.+++|
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--------------s~~-----ck~--vld~~hkrsVRsvAw 69 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--------------SWT-----CKT--VLDDGHKRSVRSVAW 69 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--------------cEE-----EEE--eccccchheeeeeee
Confidence 358889999999998 8889999999999999875210 011 111 111259999999999
Q ss_pred ecCCCEEEEEe-CCeEEEEEcC--CCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec---ceEEEEecC
Q 001295 819 SKNDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---DEVKSKLKG 892 (1106)
Q Consensus 819 s~~~~~l~~~s-dg~i~vwd~~--~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~---~~~~~~l~~ 892 (1106)
+|.|++|++++ |.++.||.-. +.+++.++.+|..+|.+++||+ +|.+||+++.|.+|.||.+.. .++...|++
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~ 148 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE 148 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc
Confidence 99999999999 9999999866 4678899999999999999999 999999999999999999985 468899999
Q ss_pred cccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEe
Q 001295 893 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE 971 (1106)
Q Consensus 893 h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d 971 (1106)
|+..|..+.|+|...+|+|+|.|.+|++|+-.. .....+.+.+.+|.. .|.+++|++.|..|++ +.|++++||-
T Consensus 149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~--dddW~c~~tl~g~~~---TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED--DDDWECVQTLDGHEN---TVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred ccccccEEEEcCCcceeEEeccCCeEEEEeecC--CCCeeEEEEecCccc---eEEEEEecCCCceEEEecCCcceEeee
Confidence 999999999999999999999999999998774 223567788888864 8999999999988888 5889999998
Q ss_pred cCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCC
Q 001295 972 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1051 (1106)
Q Consensus 972 ~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d 1051 (1106)
..+ .+ ...|+.+++.+.|. ...|++++.|+.|++|.-..+-.-..+.........|.. .|+ ++.|.|.-
T Consensus 224 ~~~-----~~-~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~-dVN--sV~w~p~~ 292 (312)
T KOG0645|consen 224 LYT-----DL-SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEV-DVN--SVQWNPKV 292 (312)
T ss_pred ecc-----Cc-chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccc-ccc--eEEEcCCC
Confidence 652 12 23678999999998 568999999999999987643222222211112223333 577 89999955
Q ss_pred CCEEEEEeCCCcEEEEeec
Q 001295 1052 PNEFALGLSDGGVHVFEPL 1070 (1106)
Q Consensus 1052 ~~~l~t~~~Dg~v~vW~~~ 1070 (1106)
.++|++|++||.|++|.+.
T Consensus 293 ~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 293 SNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCceeecCCCceEEEEEec
Confidence 7899999999999999875
No 51
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.4e-32 Score=250.80 Aligned_cols=252 Identities=18% Similarity=0.249 Sum_probs=219.1
Q ss_pred CCcceeeecc-CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEE
Q 001295 339 LPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 417 (1106)
Q Consensus 339 ~~~~~~~~~~-h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~ 417 (1106)
+|..-..++. |.++|.++.|+-||+| ..+++.|.+|++|+...|.++++ +.+|...|..
T Consensus 5 ~ptkr~~~l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVlD 64 (307)
T KOG0316|consen 5 LPTKRLSILDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVLD 64 (307)
T ss_pred CcchhceeecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceeee-------------------ecCCCceeee
Confidence 3454455555 9999999999999998 77778899999999999998874 7999999999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC--CceeE
Q 001295 418 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN--GAKQY 495 (1106)
Q Consensus 418 l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~--~~~~~ 495 (1106)
++.+.|...+++|+.|+.|.+||+.+|+.++ .+.+|.+.|+.++|+.+.. .+++|+.|.++++||.++ .++++
T Consensus 65 ~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQ 139 (307)
T KOG0316|consen 65 AALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQ 139 (307)
T ss_pred ccccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccc
Confidence 9999999999999999999999999999887 6899999999999999988 899999999999999885 57789
Q ss_pred EEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEc
Q 001295 496 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 575 (1106)
Q Consensus 496 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~ 575 (1106)
.+......|.++.+.. ..|++|+.||++|.||++.+.....+- ++ ++++++|+
T Consensus 140 ildea~D~V~Si~v~~----heIvaGS~DGtvRtydiR~G~l~sDy~--g~---------------------pit~vs~s 192 (307)
T KOG0316|consen 140 ILDEAKDGVSSIDVAE----HEIVAGSVDGTVRTYDIRKGTLSSDYF--GH---------------------PITSVSFS 192 (307)
T ss_pred hhhhhcCceeEEEecc----cEEEeeccCCcEEEEEeecceeehhhc--CC---------------------cceeEEec
Confidence 9998899999998632 579999999999999999765443332 23 45555555
Q ss_pred CCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 576 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 576 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
++++..++++.|+++++.|-.+|+++..+++|.....=..++++.....+++|+.||.+++||+.+.
T Consensus 193 ~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 193 KDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred CCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc
Confidence 5556899999999999999999999999999987766677888888899999999999999999876
No 52
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=9.4e-33 Score=281.50 Aligned_cols=290 Identities=19% Similarity=0.307 Sum_probs=249.6
Q ss_pred ccCCCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEEccC-CceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEE
Q 001295 407 LVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 484 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~sp-dg~~las~~~d~~v~iwd~~~-~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~ 484 (1106)
++.||...|+++.|.| .+.+|++++.|+.|+||++-. +++++ ++.||..+|.+++|+++|. .|+|+|.|+.|+
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~lK 283 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFLK 283 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceeee
Confidence 5899999999999999 999999999999999999987 55555 7999999999999999999 799999999999
Q ss_pred EEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEee
Q 001295 485 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 564 (1106)
Q Consensus 485 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~ 564 (1106)
+||+++|+++..+. ....++|+.|+|++ .+.+++|+.|+.|+.||+++++.+..+..|-+.|..+.|-++|+
T Consensus 284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~------ 355 (503)
T KOG0282|consen 284 LWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGR------ 355 (503)
T ss_pred eeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCc------
Confidence 99999999999987 45678899998876 37999999999999999999999889999999888888888887
Q ss_pred eccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCch
Q 001295 565 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 644 (1106)
Q Consensus 565 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 644 (1106)
++++.++|++++||+...+-.+....... .....++..+|+++++++-+.|+.|.++.+....+
T Consensus 356 ---------------rFissSDdks~riWe~~~~v~ik~i~~~~-~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r 419 (503)
T KOG0282|consen 356 ---------------RFISSSDDKSVRIWENRIPVPIKNIADPE-MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR 419 (503)
T ss_pred ---------------eEeeeccCccEEEEEcCCCccchhhcchh-hccCcceecCCCCCeehhhccCceEEEEecccccc
Confidence 79999999999999998887766553222 23578899999999999999999999997644311
Q ss_pred h--hhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEe
Q 001295 645 L--LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 722 (1106)
Q Consensus 645 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~ 722 (1106)
. .+.+++|.
T Consensus 420 ~nkkK~feGh~--------------------------------------------------------------------- 430 (503)
T KOG0282|consen 420 LNKKKRFEGHS--------------------------------------------------------------------- 430 (503)
T ss_pred cCHhhhhccee---------------------------------------------------------------------
Confidence 1 11111110
Q ss_pred cCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccc
Q 001295 723 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 802 (1106)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 802 (1106)
T Consensus 431 -------------------------------------------------------------------------------- 430 (503)
T KOG0282|consen 431 -------------------------------------------------------------------------------- 430 (503)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEE
Q 001295 803 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 880 (1106)
Q Consensus 803 ~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd 880 (1106)
-.+--..+.|||||.+|++|+ ||.+.+||.++.+.+..+.+|.+.++.+.|+|.....+|+++.||.|++||
T Consensus 431 ------vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 431 ------VAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ------ccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 122345688999999999998 899999999999999999999999999999998888999999999999996
No 53
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.2e-32 Score=274.29 Aligned_cols=284 Identities=17% Similarity=0.269 Sum_probs=240.1
Q ss_pred cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295 742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 821 (1106)
Q Consensus 742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 821 (1106)
-...|..+.|.|+|+.|++++..|.+.+|+...-.+ ...+ ..|...|+++.|+++
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF-----------------------Etil--QaHDs~Vr~m~ws~~ 149 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF-----------------------ETIL--QAHDSPVRTMKWSHN 149 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeH-----------------------HHHh--hhhcccceeEEEccC
Confidence 456789999999999999999999999997532111 0011 239999999999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCceeeeecCCC-CCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeE
Q 001295 822 DSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 899 (1106)
Q Consensus 822 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 899 (1106)
+.++++|+ +|.|++|+..- ..+..+.+|. ..|++++||| ....++++++||+|+|||....+.-..+.||.-.|.+
T Consensus 150 g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVks 227 (464)
T KOG0284|consen 150 GTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKS 227 (464)
T ss_pred CCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcce
Confidence 99999999 89999999764 3344555554 8899999999 6667889999999999999988888899999999999
Q ss_pred EEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCceEe
Q 001295 900 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECV 978 (1106)
Q Consensus 900 l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~~~ 978 (1106)
++|+|...+|||+|.|..|++||.+++. ++....+|.. .|..+.|++++.+|++ +.|..+++||+++.+.+
T Consensus 228 vdWHP~kgLiasgskDnlVKlWDprSg~-----cl~tlh~HKn---tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl 299 (464)
T KOG0284|consen 228 VDWHPTKGLIASGSKDNLVKLWDPRSGS-----CLATLHGHKN---TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL 299 (464)
T ss_pred eccCCccceeEEccCCceeEeecCCCcc-----hhhhhhhccc---eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH
Confidence 9999999999999999999999999965 4666667664 8999999999999999 68999999999988888
Q ss_pred eecccCCCCCCeeEEEECC-CCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEE
Q 001295 979 KQWVPRESSAPITHATFSC-DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1057 (1106)
Q Consensus 979 ~~~~~~~h~~~v~~l~~s~-d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t 1057 (1106)
..+. +|...|++++|+| ...+|.+|+.||.|..|.+...+.+..+ +.+| ...|+ +++|+| =|.+|++
T Consensus 300 ~~~r--~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i------~~AH-d~~iw--sl~~hP-lGhil~t 367 (464)
T KOG0284|consen 300 FTYR--GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEI------PPAH-DGEIW--SLAYHP-LGHILAT 367 (464)
T ss_pred HHhh--cchhhheeeccccccccceeeccCCCceEEEeccccccccCC------Cccc-cccee--eeeccc-cceeEee
Confidence 7776 8999999999999 4557889999999999999855555443 3454 44488 999999 5999999
Q ss_pred EeCCCcEEEEeecCC
Q 001295 1058 GLSDGGVHVFEPLES 1072 (1106)
Q Consensus 1058 ~~~Dg~v~vW~~~~~ 1072 (1106)
|+.|.++++|.-...
T Consensus 368 gsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 368 GSNDRTVRFWTRNRP 382 (464)
T ss_pred cCCCcceeeeccCCC
Confidence 999999999986543
No 54
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.3e-31 Score=301.80 Aligned_cols=289 Identities=27% Similarity=0.422 Sum_probs=245.2
Q ss_pred cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295 742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 821 (1106)
Q Consensus 742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 821 (1106)
+...|.++.|+++|+.+++++.++.+++|+..... + .....+. +|...|..++|+|+
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~----------------~-----~~~~~l~--~h~~~v~~~~fs~d 214 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIK----------------S-----NLLRELS--GHTRGVSDVAFSPD 214 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeeccccc----------------c-----hhhcccc--ccccceeeeEECCC
Confidence 46789999999999999999999999999864211 0 1111122 39999999999999
Q ss_pred CCEEEEEe-CCeEEEEEc-CCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeE
Q 001295 822 DSYVMSAS-GGKISLFNM-MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 899 (1106)
Q Consensus 822 ~~~l~~~s-dg~i~vwd~-~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 899 (1106)
++++++++ |++|+|||+ ..+.+++++.+|...|++++|+| +++++++|+.|++|+|||+.+++++..+.+|.+.|++
T Consensus 215 ~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~ 293 (456)
T KOG0266|consen 215 GSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISG 293 (456)
T ss_pred CcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEE
Confidence 99999999 899999999 56689999999999999999999 7799999999999999999999999999999999999
Q ss_pred EEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceEe
Q 001295 900 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECV 978 (1106)
Q Consensus 900 l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~~ 978 (1106)
++|++|+.+|++++.|+.|+|||+.++... +.....++.... .+..+.|+|++++++++ .|+.+++||+..+.++
T Consensus 294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~ 369 (456)
T KOG0266|consen 294 LAFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV 369 (456)
T ss_pred EEECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcce
Confidence 999999999999999999999999997643 344445554433 68999999999999995 7779999999999999
Q ss_pred eecccCCCCC---CeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEE
Q 001295 979 KQWVPRESSA---PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1055 (1106)
Q Consensus 979 ~~~~~~~h~~---~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l 1055 (1106)
..+. +|.. .+.+..+++.+.++++|+.|+.|++||+.++..++++. +|....+. .+.++| ..+++
T Consensus 370 ~~~~--~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~-------~h~~~~~~--~~~~~~-~~~~~ 437 (456)
T KOG0266|consen 370 GTYT--GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE-------GHSKAAVS--DLSSHP-TENLI 437 (456)
T ss_pred eeec--ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc-------CCCCCcee--ccccCC-CcCee
Confidence 9887 5544 45566678899999999999999999999999888887 33222234 688888 57888
Q ss_pred EEEe--CCCcEEEEeec
Q 001295 1056 ALGL--SDGGVHVFEPL 1070 (1106)
Q Consensus 1056 ~t~~--~Dg~v~vW~~~ 1070 (1106)
++++ .|+.+++|...
T Consensus 438 ~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 438 ASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eecCcCCCceEEEecCC
Confidence 8888 78999999864
No 55
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=5e-33 Score=270.18 Aligned_cols=232 Identities=21% Similarity=0.363 Sum_probs=204.3
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 428 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 428 (1106)
..+.|.|+.+..+ .+++|..|++|+|||.++-+++. ++.||++.|.|+.| |.+.|+
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~-------------------~L~GHtGSVLCLqy--d~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLK-------------------ILTGHTGSVLCLQY--DERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHH-------------------hhhcCCCcEEeeec--cceEEE
Confidence 4578999998543 48999999999999999887766 58999999999999 567999
Q ss_pred EEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCce---eEEEeccCCCeE
Q 001295 429 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK---QYIFEGHEAPVY 505 (1106)
Q Consensus 429 s~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~~~v~ 505 (1106)
+|+.|.+|+|||+++|+++. ++-+|...|..+.|+.. +++|++.|.+|.+||+.+... .+.+.||...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999887 68899999999999743 799999999999999987653 357889999999
Q ss_pred EEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEE
Q 001295 506 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 585 (1106)
Q Consensus 506 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 585 (1106)
.+.|. . +++++++.|.+|++|++.+.+.+.++.+|...|.++.+. +.++++|+
T Consensus 325 vVdfd--~--kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr-----------------------~rlvVSGS 377 (499)
T KOG0281|consen 325 VVDFD--D--KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR-----------------------DRLVVSGS 377 (499)
T ss_pred eeccc--c--ceEEEecCCceEEEEeccceeeehhhhcccccceehhcc-----------------------CeEEEecC
Confidence 99863 2 599999999999999999999999999998877776542 34789999
Q ss_pred CCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 586 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 586 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
.|.+|++||+..|.+++.+++|+. -|.|+.| |.+.+++|..||+|++||+..+
T Consensus 378 SDntIRlwdi~~G~cLRvLeGHEe--LvRciRF--d~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 378 SDNTIRLWDIECGACLRVLEGHEE--LVRCIRF--DNKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred CCceEEEEeccccHHHHHHhchHH--hhhheee--cCceeeeccccceEEEEecccc
Confidence 999999999999999999998855 7999999 6689999999999999999876
No 56
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.1e-31 Score=299.76 Aligned_cols=257 Identities=21% Similarity=0.371 Sum_probs=214.1
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcc--eeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCE
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 426 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 426 (1106)
|...|.|+.|||+|++ +++++.|+.+++|+..+++ .+. .+.+|...|.+++|+|||++
T Consensus 158 ~~~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~-------------------~l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLR-------------------ELSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhc-------------------cccccccceeeeEECCCCcE
Confidence 5899999999999996 9999999999999997666 222 35899999999999999999
Q ss_pred EEEEeCCCeEEEEEcc-CCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeE
Q 001295 427 FGVAYSRHIVQIYSYH-GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 505 (1106)
Q Consensus 427 las~~~d~~v~iwd~~-~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 505 (1106)
+++++.|++|+|||+. .+..++ ++.+|...|++++|+|+++ ++++|+.|++|+|||+++++++..+.+|.+.|+
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 9999999999999994 444444 7889999999999999996 899999999999999999999999999999999
Q ss_pred EEeccccCCceEEEEEecCCeEEEEeCCCCCc--eeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEE
Q 001295 506 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 583 (1106)
Q Consensus 506 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 583 (1106)
+++|. +++++|++++.|+.|++||+.++.. ...+..+... . .+..+.|+|++.++++
T Consensus 293 ~~~f~--~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~------------------~-~~~~~~fsp~~~~ll~ 351 (456)
T KOG0266|consen 293 GLAFS--PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENS------------------A-PVTSVQFSPNGKYLLS 351 (456)
T ss_pred EEEEC--CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCC------------------C-ceeEEEECCCCcEEEE
Confidence 99975 4558999999999999999998773 2333332222 0 3445555566669999
Q ss_pred EECCCeEEEEECCCcceeEEEccCCCC-CCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhccc
Q 001295 584 AGDDFSIKFWDMDSVQLLTSIDADGGL-PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 652 (1106)
Q Consensus 584 ~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 652 (1106)
+..|+.+++||+..+.....+.++... ..+.+..+++.+.++++|+.|+.|.+|+..++ ..+..+.+|
T Consensus 352 ~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~h 420 (456)
T KOG0266|consen 352 ASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG-GILQRLEGH 420 (456)
T ss_pred ecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc-chhhhhcCC
Confidence 999999999999999999999877653 23445556789999999999999999999886 555555443
No 57
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.6e-32 Score=266.77 Aligned_cols=273 Identities=21% Similarity=0.317 Sum_probs=229.6
Q ss_pred ccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCC
Q 001295 456 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL 535 (1106)
Q Consensus 456 h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 535 (1106)
....|+|+.+. |+ .+++|..|++|+|||..+-.+++.+.||++.|.|+.+. ...+++|+.|.+|++||+.++
T Consensus 196 ~skgVYClQYD-D~---kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd----~rviisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 196 NSKGVYCLQYD-DE---KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD----ERVIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred cCCceEEEEec-ch---hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc----ceEEEecCCCceEEEEeccCC
Confidence 34579999984 33 58999999999999999999999999999999999863 269999999999999999999
Q ss_pred CceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcce---eEEEccCCCCCC
Q 001295 536 GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL---LTSIDADGGLPA 612 (1106)
Q Consensus 536 ~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~ 612 (1106)
+.+.++-.|...|..+.|+.. ++++++.|.++.+||+..... .+.+.+| ...
T Consensus 268 e~l~tlihHceaVLhlrf~ng-----------------------~mvtcSkDrsiaVWdm~sps~it~rrVLvGH--rAa 322 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFSNG-----------------------YMVTCSKDRSIAVWDMASPTDITLRRVLVGH--RAA 322 (499)
T ss_pred chhhHHhhhcceeEEEEEeCC-----------------------EEEEecCCceeEEEeccCchHHHHHHHHhhh--hhh
Confidence 999999999998888888653 699999999999999987542 2334444 557
Q ss_pred cCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccc
Q 001295 613 SPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVS 692 (1106)
Q Consensus 613 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1106)
|+.+.|+ .+++++++.|.+|++|++.++ +.++.+.+
T Consensus 323 VNvVdfd--~kyIVsASgDRTikvW~~st~-efvRtl~g----------------------------------------- 358 (499)
T KOG0281|consen 323 VNVVDFD--DKYIVSASGDRTIKVWSTSTC-EFVRTLNG----------------------------------------- 358 (499)
T ss_pred eeeeccc--cceEEEecCCceEEEEeccce-eeehhhhc-----------------------------------------
Confidence 8888885 569999999999999998877 44444433
Q ss_pred cCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeec
Q 001295 693 IPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKW 772 (1106)
Q Consensus 693 ~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~ 772 (1106)
T Consensus 359 -------------------------------------------------------------------------------- 358 (499)
T KOG0281|consen 359 -------------------------------------------------------------------------------- 358 (499)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCC
Q 001295 773 QRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP 851 (1106)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~ 851 (1106)
|...|.|+.+ .++++++|+ |.+|++||+..|.+++.+++|.
T Consensus 359 ------------------------------------HkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHE 400 (499)
T KOG0281|consen 359 ------------------------------------HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHE 400 (499)
T ss_pred ------------------------------------ccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchH
Confidence 4444444444 678899998 9999999999999999999999
Q ss_pred CCeeEEEEecCCCceEEEeeCCCcEEEEEeecce---------EEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEe
Q 001295 852 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922 (1106)
Q Consensus 852 ~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~---------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd 922 (1106)
.-|.|+.| |.+.+++|..||+|+|||+.++. ++..+..|++.|..+.| |...+++++.|.+|.|||
T Consensus 401 eLvRciRF---d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 401 ELVRCIRF---DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWD 475 (499)
T ss_pred Hhhhheee---cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEE
Confidence 99999999 56789999999999999998753 45566779999999999 678999999999999999
Q ss_pred CCCccc
Q 001295 923 SDGWEK 928 (1106)
Q Consensus 923 ~~~~~~ 928 (1106)
+..+..
T Consensus 476 Fl~~~~ 481 (499)
T KOG0281|consen 476 FLNGPP 481 (499)
T ss_pred cCCCCc
Confidence 987543
No 58
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.98 E-value=9.2e-30 Score=266.03 Aligned_cols=623 Identities=15% Similarity=0.197 Sum_probs=345.9
Q ss_pred ceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEc
Q 001295 342 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 421 (1106)
Q Consensus 342 ~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 421 (1106)
.+..+-.|++.|+.+.|||-...||||++.|..|+||.+..|-... ..-....+.+..-.|.|+.|+
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-------------LSape~~~g~~~~~vE~l~fH 137 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-------------LSAPEIDVGGGNVIVECLRFH 137 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-------------cCCcceeecCCceEEEEeecc
Confidence 3444445999999999999888899999999999999998543221 001112355566689999999
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCC-CCceeEEEecc
Q 001295 422 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYIFEGH 500 (1106)
Q Consensus 422 pdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~h 500 (1106)
|...-|...+..|+++|||+.+++.+. .+.+|...|.+..|+.||+ ++++.+.|+.|+|||.+ .++.++..++|
T Consensus 138 pTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~H 212 (1012)
T KOG1445|consen 138 PTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEGH 212 (1012)
T ss_pred cCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCcccccccc
Confidence 955555555678999999999987654 6889999999999999999 89999999999999987 57888888988
Q ss_pred CCCe-EEEeccccCCceEEEEEecC----CeEEEEeCCCCCcee-EeeCC-CCeeEEEEEecCCCeEE-EeeeccceeEE
Q 001295 501 EAPV-YSVCPHHKENIQFIFSTALD----GKIKAWLYDNLGSRV-DYEAP-GRWCTTMAYSADGTRTY-QGFRKRSLGVV 572 (1106)
Q Consensus 501 ~~~v-~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~-~~~~~-~~~v~~~~~s~~~~~~~-~~~~~~~i~~~ 572 (1106)
.+.- ..+.|. ++-..|++.+.+ ..|++||.+...... ++... .-.|.--.|.||.+.++ .|.....+.++
T Consensus 213 ~~~rdsRv~w~--Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~l 290 (1012)
T KOG1445|consen 213 GGMRDSRVLWA--GNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFML 290 (1012)
T ss_pred ccchhheeeec--cchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEE
Confidence 7642 233443 333467776654 579999998754332 22221 11233345566665443 33334455555
Q ss_pred EEcCCCCEEEEEE--------------CCCeE--------EEEECCCcceeEEE---------ccC--------------
Q 001295 573 QFDTTKNRFLAAG--------------DDFSI--------KFWDMDSVQLLTSI---------DAD-------------- 607 (1106)
Q Consensus 573 ~~~~~~~~l~~~~--------------~d~~i--------~iwd~~~~~~~~~~---------~~~-------------- 607 (1106)
.+.+...+|.-+- ....+ +++.+.....+... ..|
T Consensus 291 E~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~ 370 (1012)
T KOG1445|consen 291 EMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGC 370 (1012)
T ss_pred EecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCc
Confidence 5554443322100 00011 12222111111000 000
Q ss_pred -------CCCCCcCeEEEccCCC-------------EEE-EEeC---------------CCcEE--EEEcc------CCc
Q 001295 608 -------GGLPASPRIRFNKDGC-------------LLA-VSTN---------------DNGIK--ILATS------DGI 643 (1106)
Q Consensus 608 -------~~~~~v~~v~~s~~~~-------------~l~-~~~~---------------dg~i~--iwd~~------~~~ 643 (1106)
+....+..++..|..+ ..+ +++. .+.+- +=|.. ++
T Consensus 371 ~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~- 449 (1012)
T KOG1445|consen 371 TAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKK- 449 (1012)
T ss_pred CccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcc-
Confidence 0001111222222100 000 0000 00000 00000 00
Q ss_pred hhhhhhc---------------------ccccccccCCCCCCCCcCchhhhHh-----hhhcccccccccccccccCCCC
Q 001295 644 RLLRTFE---------------------NLAYDASRTSENSKPTISPISAAAA-----AAATSAGLADRAASMVSIPGMN 697 (1106)
Q Consensus 644 ~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 697 (1106)
...+.+. +.+..+......+.....+.+.... ...+.+... ++.|-..-..+.
T Consensus 450 ~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~-ksvPe~~~~~~g 528 (1012)
T KOG1445|consen 450 EEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFG-KSVPEQPPVNFG 528 (1012)
T ss_pred hhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCcccc-ccCCCCCCcccC
Confidence 0000000 0000000000000000000000000 000000000 000000000000
Q ss_pred CCccccCCCCccccccC------CCceeeEecCCCCCCcc------ceecccCccccccceEEEEEcCCCceEE--Eeec
Q 001295 698 GDVRSLADVKPRITEES------NDKSKVWKLTELSEPNQ------CRSLRLPENLRATKISRLIFTNSGNAIL--ALAS 763 (1106)
Q Consensus 698 ~~~~~~~~~~~l~~~~~------d~~i~vw~~~~~~~~~~------~~~~~~~~~~~~~~i~~~~~s~~~~~l~--~~~~ 763 (1106)
.. .........+.+. -|.+.-|.--.+....+ ++.+... -.+.-. -|+.+...++ ..+.
T Consensus 529 ~~--~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~---~PgEsn--Gfcan~~rvAVPL~g~ 601 (1012)
T KOG1445|consen 529 KP--ISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTR---LPGESN--GFCANNKRVAVPLAGS 601 (1012)
T ss_pred CC--ccccccccccccccccceeeccchheeeccCccccchhhhhhhhccccc---CCCccC--ceeeccceEEEEecCC
Confidence 00 0000000001000 01111111111111100 0100000 011111 2333333333 3455
Q ss_pred CceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEec-CCCEEEEEe-CCeEEEEEcCCC
Q 001295 764 NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMTF 841 (1106)
Q Consensus 764 dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~s-dg~i~vwd~~~~ 841 (1106)
.|.|-||+++....-+++. +.+......|+.+.|+| |...||+++ ||.|++|.+..+
T Consensus 602 gG~iai~el~~PGrLPDgv---------------------~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~ 660 (1012)
T KOG1445|consen 602 GGVIAIYELNEPGRLPDGV---------------------MPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTAN 660 (1012)
T ss_pred CceEEEEEcCCCCCCCccc---------------------ccccccCceeeecccCCCChHHeeecccCceEEEEEeccC
Confidence 7899999988644433332 33334677899999998 667888888 799999998754
Q ss_pred c-------eeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcC
Q 001295 842 K-------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA 914 (1106)
Q Consensus 842 ~-------~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~ 914 (1106)
. .-..+..|...|+++.|+|-...+||+++.|-+|++||+.+++....|.+|++.|.+++|||||+.+|+.+.
T Consensus 661 gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcK 740 (1012)
T KOG1445|consen 661 GLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCK 740 (1012)
T ss_pred CCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeec
Confidence 3 234577899999999999977889999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-Ee----CCeEEEEecCCceE--eeecccCCCC
Q 001295 915 DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VH----ETQLAIFETTKLEC--VKQWVPRESS 987 (1106)
Q Consensus 915 Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~----d~~v~i~d~~~~~~--~~~~~~~~h~ 987 (1106)
||+|+||+-.+++. . +.++..+....-..+.|.-||+++++ +. +++|.+||..+... +.+...+- .
T Consensus 741 Dg~~rVy~Prs~e~----p--v~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv-a 813 (1012)
T KOG1445|consen 741 DGTLRVYEPRSREQ----P--VYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV-A 813 (1012)
T ss_pred CceEEEeCCCCCCC----c--cccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecc-c
Confidence 99999999887553 1 22233222244567899999999988 44 45799999876542 22211111 1
Q ss_pred CCeeEEEECCCCCE-EEEEEcCCeEEEEEcCCcee
Q 001295 988 APITHATFSCDSQL-VYACFLDATVCVFSAANLKL 1021 (1106)
Q Consensus 988 ~~v~~l~~s~d~~~-l~t~s~Dg~i~vwd~~~~~~ 1021 (1106)
..+.--.+.+|... +++|-.|..|.+|.+...+.
T Consensus 814 ps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 814 PSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred CccccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence 12223345566665 67888899999999865443
No 59
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.98 E-value=6.4e-32 Score=275.45 Aligned_cols=266 Identities=17% Similarity=0.254 Sum_probs=218.1
Q ss_pred CCCcceeeecc-CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCC-cceeEEeeeeeeccCcCCccccccccCCCCcCe
Q 001295 338 DLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS-RERLVLRNFKVWDLGACSMPLQAALVKDPGVSV 415 (1106)
Q Consensus 338 ~~~~~~~~~~~-h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V 415 (1106)
.+|+.+..++. |+..|+++.|.|-.-+||++|+.|+.|+||++.. ++++. ++.+|..+|
T Consensus 201 ~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr-------------------tf~gH~k~V 261 (503)
T KOG0282|consen 201 YLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR-------------------TFKGHRKPV 261 (503)
T ss_pred eccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh-------------------hhhcchhhh
Confidence 45777777776 9999999999995555899999999999999977 66655 489999999
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeE
Q 001295 416 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 495 (1106)
Q Consensus 416 ~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 495 (1106)
..++|+++|..+.++|.|+.|++||+++|+++..+. -...++|+.|.||+.+ .|++|+.|+.|+.||+++++.++
T Consensus 262 rd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~----~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvq 336 (503)
T KOG0282|consen 262 RDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH----LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQ 336 (503)
T ss_pred hhhhccccCCeeeeeecceeeeeeccccceEEEEEe----cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHH
Confidence 999999999999999999999999999999876432 2457899999999965 79999999999999999999999
Q ss_pred EEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEc
Q 001295 496 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 575 (1106)
Q Consensus 496 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~ 575 (1106)
.+..|-+.|..+.|.+ ++..+++.+.|+++++|+.+....+.....+. .....++..+
T Consensus 337 eYd~hLg~i~~i~F~~--~g~rFissSDdks~riWe~~~~v~ik~i~~~~--------------------~hsmP~~~~~ 394 (503)
T KOG0282|consen 337 EYDRHLGAILDITFVD--EGRRFISSSDDKSVRIWENRIPVPIKNIADPE--------------------MHTMPCLTLH 394 (503)
T ss_pred HHHhhhhheeeeEEcc--CCceEeeeccCccEEEEEcCCCccchhhcchh--------------------hccCcceecC
Confidence 9999999999999854 45899999999999999998755443221111 1144556677
Q ss_pred CCCCEEEEEECCCeEEEEECCCc---ceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhc
Q 001295 576 TTKNRFLAAGDDFSIKFWDMDSV---QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 650 (1106)
Q Consensus 576 ~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 650 (1106)
|+++++++-+.|+.|.++.+... .....+.+|.-.+.-..+.|||||.+|++|+.||.+.+||.++- +.+..+.
T Consensus 395 P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~-kl~~~lk 471 (503)
T KOG0282|consen 395 PNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT-KLVSKLK 471 (503)
T ss_pred CCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh-hhhhccc
Confidence 77779999999999999986532 23345566655556678999999999999999999999999876 4554443
No 60
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=2.1e-30 Score=239.04 Aligned_cols=287 Identities=17% Similarity=0.266 Sum_probs=234.5
Q ss_pred ccccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEE
Q 001295 405 AALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 484 (1106)
Q Consensus 405 ~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~ 484 (1106)
..++..|+++|.++.|+-||+|.++++.|++|++|+...|.+++ ++.+|...|..++.+.|+. .|++|+.|+.|.
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~ 84 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQ 84 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEE
Confidence 34688999999999999999999999999999999999998877 7899999999999999998 699999999999
Q ss_pred EEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCC--CceeEeeCCCCeeEEEEEecCCCeEEE
Q 001295 485 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTYQ 562 (1106)
Q Consensus 485 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~~~ 562 (1106)
+||+.+|+.++.|.+|.+.|+.+.|+.. ...+++|+.|.++++||.++. ++++.+......|.++....
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fNee--sSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~------- 155 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFNEE--SSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE------- 155 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEecCc--ceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc-------
Confidence 9999999999999999999999998644 479999999999999999864 34455555555666655543
Q ss_pred eeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 563 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 563 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
..+++|+.||++|.||++.|+.....-++ +|++++|++|++..+.++-|+++++.|-.+|
T Consensus 156 ----------------heIvaGS~DGtvRtydiR~G~l~sDy~g~----pit~vs~s~d~nc~La~~l~stlrLlDk~tG 215 (307)
T KOG0316|consen 156 ----------------HEIVAGSVDGTVRTYDIRKGTLSSDYFGH----PITSVSFSKDGNCSLASSLDSTLRLLDKETG 215 (307)
T ss_pred ----------------cEEEeeccCCcEEEEEeecceeehhhcCC----cceeEEecCCCCEEEEeeccceeeecccchh
Confidence 25899999999999999999877665533 7999999999999999999999999999999
Q ss_pred chhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEe
Q 001295 643 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 722 (1106)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~ 722 (1106)
++++...+|...-.
T Consensus 216 -klL~sYkGhkn~ey----------------------------------------------------------------- 229 (307)
T KOG0316|consen 216 -KLLKSYKGHKNMEY----------------------------------------------------------------- 229 (307)
T ss_pred -HHHHHhccccccee-----------------------------------------------------------------
Confidence 88888888765311
Q ss_pred cCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccc
Q 001295 723 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 802 (1106)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 802 (1106)
-...+++.....++++++||.+++||+.... .+..
T Consensus 230 -----------------------kldc~l~qsdthV~sgSEDG~Vy~wdLvd~~----------------------~~sk 264 (307)
T KOG0316|consen 230 -----------------------KLDCCLNQSDTHVFSGSEDGKVYFWDLVDET----------------------QISK 264 (307)
T ss_pred -----------------------eeeeeecccceeEEeccCCceEEEEEeccce----------------------eeee
Confidence 1234555566678888889999988875321 1111
Q ss_pred ccCCCCCCCC-eeEEEEecCCCEEEEEeCCeEEEEEcC
Q 001295 803 DVTDSNPEEA-VPCFALSKNDSYVMSASGGKISLFNMM 839 (1106)
Q Consensus 803 ~~~~~~~~~~-v~~l~~s~~~~~l~~~sdg~i~vwd~~ 839 (1106)
+. .+... +..+.+.|.-..++++.++.+..|.-+
T Consensus 265 -~~--~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~~~ 299 (307)
T KOG0316|consen 265 -LS--VVSTVIVTDLSCHPTMDDFITATGHGDLFWYQE 299 (307)
T ss_pred -ec--cCCceeEEeeecccCccceeEecCCceeceeeh
Confidence 11 13334 788999999888888888777777643
No 61
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=6.4e-31 Score=253.01 Aligned_cols=292 Identities=19% Similarity=0.279 Sum_probs=238.6
Q ss_pred ccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEec
Q 001295 741 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 820 (1106)
Q Consensus 741 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 820 (1106)
+....+.+..|+|||+++++++-||.|.+|+..+++...+-+..+. .. ++ -+...|.|++||.
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq---------d~-fM-------Mmd~aVlci~FSR 273 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ---------DN-FM-------MMDDAVLCISFSR 273 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh---------cc-ee-------ecccceEEEeecc
Confidence 3566788999999999999999999999999876654333222211 11 11 1688999999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCceeeeec-CCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCee
Q 001295 821 NDSYVMSAS-GGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 898 (1106)
Q Consensus 821 ~~~~l~~~s-dg~i~vwd~~~~~~~~~~~-~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 898 (1106)
|...+|+|+ ||.|++|.+.+|.|++.|. .|...|+|+.||. |+..+.+++.|.+++|.-+++|++++.++||++.|+
T Consensus 274 DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn 352 (508)
T KOG0275|consen 274 DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVN 352 (508)
T ss_pred cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCcccccc
Confidence 999999999 9999999999999999987 8999999999999 888899999999999999999999999999999999
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCC-CcEEEE-EeCCeEEEEecCCce
Q 001295 899 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLV-VHETQLAIFETTKLE 976 (1106)
Q Consensus 899 ~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d-g~~l~~-~~d~~v~i~d~~~~~ 976 (1106)
...|++||..+++++.||+|+||+.++.++. ..+.... ....|..+..-|- -..+++ ...++|.|.++. |+
T Consensus 353 ~a~ft~dG~~iisaSsDgtvkvW~~KtteC~-----~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQ 425 (508)
T KOG0275|consen 353 EATFTDDGHHIISASSDGTVKVWHGKTTECL-----STFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQ 425 (508)
T ss_pred ceEEcCCCCeEEEecCCccEEEecCcchhhh-----hhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ce
Confidence 9999999999999999999999999997653 3322211 1235666666554 445555 477889999885 77
Q ss_pred EeeecccCC-CCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEE
Q 001295 977 CVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1055 (1106)
Q Consensus 977 ~~~~~~~~~-h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l 1055 (1106)
.++.+..+. ..+...+.+.||.|.++++.++|+.++.|.+.+|++...+..+... ++.++.+|. .+.+
T Consensus 426 vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkd----------vIGl~HHPH-qNll 494 (508)
T KOG0275|consen 426 VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKD----------VIGLTHHPH-QNLL 494 (508)
T ss_pred EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccc----------ccccccCcc-cchh
Confidence 888876432 2456777889999999999999999999999999999887733222 336889994 7899
Q ss_pred EEEeCCCcEEEEe
Q 001295 1056 ALGLSDGGVHVFE 1068 (1106)
Q Consensus 1056 ~t~~~Dg~v~vW~ 1068 (1106)
++-+.||.+++|.
T Consensus 495 AsYsEDgllKLWk 507 (508)
T KOG0275|consen 495 ASYSEDGLLKLWK 507 (508)
T ss_pred hhhcccchhhhcC
Confidence 9999999999996
No 62
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=7.5e-31 Score=244.03 Aligned_cols=287 Identities=16% Similarity=0.280 Sum_probs=226.6
Q ss_pred ccCCCCcCeEEEEEcc---CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcE
Q 001295 407 LVKDPGVSVNRVIWSP---DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 483 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~sp---dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i 483 (1106)
+..||+.+|..++||| +|-+|++++.|+.-.+-+-++|..+. +|.||.+.|++.....+.. ..++++.|-+.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~--~aasaaadfta 83 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNAT--RAASAAADFTA 83 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhh--hhhhhcccchh
Confidence 4689999999999997 89999999999998888888988777 7999999999999988877 68999999999
Q ss_pred EEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCce-eEeeCCCCeeEEEEEecCCCeEEE
Q 001295 484 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-VDYEAPGRWCTTMAYSADGTRTYQ 562 (1106)
Q Consensus 484 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~~~ 562 (1106)
+|||.-+|..+++|. |..-|.+++|+. |.++|++|+.++.+|+||++..+.. ..+.+|.+.|..+.|
T Consensus 84 kvw~a~tgdelhsf~-hkhivk~~af~~--ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~w--------- 151 (334)
T KOG0278|consen 84 KVWDAVTGDELHSFE-HKHIVKAVAFSQ--DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLW--------- 151 (334)
T ss_pred hhhhhhhhhhhhhhh-hhheeeeEEecc--cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEE---------
Confidence 999999999999997 899999999854 4478999999999999999865433 344444444443333
Q ss_pred eeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 563 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 563 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
....+.+++.+.|++||+||.+++
T Consensus 152 --------------------------------------------------------c~eD~~iLSSadd~tVRLWD~rTg 175 (334)
T KOG0278|consen 152 --------------------------------------------------------CHEDKCILSSADDKTVRLWDHRTG 175 (334)
T ss_pred --------------------------------------------------------eccCceEEeeccCCceEEEEeccC
Confidence 333334444455555555555544
Q ss_pred chhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEe
Q 001295 643 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 722 (1106)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~ 722 (1106)
. .++.+
T Consensus 176 t-~v~sL------------------------------------------------------------------------- 181 (334)
T KOG0278|consen 176 T-EVQSL------------------------------------------------------------------------- 181 (334)
T ss_pred c-EEEEE-------------------------------------------------------------------------
Confidence 1 00000
Q ss_pred cCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccc
Q 001295 723 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 802 (1106)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 802 (1106)
T Consensus 182 -------------------------------------------------------------------------------- 181 (334)
T KOG0278|consen 182 -------------------------------------------------------------------------------- 181 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEee
Q 001295 803 DVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 882 (1106)
Q Consensus 803 ~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~ 882 (1106)
.....|+++.++++|++|.++..+.|.+||..+...++.+.. ...|.+..++| +..++++|++|+.++.||..
T Consensus 182 -----~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P-~k~~fVaGged~~~~kfDy~ 254 (334)
T KOG0278|consen 182 -----EFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHP-KKEFFVAGGEDFKVYKFDYN 254 (334)
T ss_pred -----ecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccC-ccccccccccC-CCceEEecCcceEEEEEecc
Confidence 023345566666666666666667777888777777776663 44689999999 77899999999999999999
Q ss_pred cceEEEEe-cCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcc
Q 001295 883 VDEVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 927 (1106)
Q Consensus 883 ~~~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~ 927 (1106)
+|..+..+ ++|.++|.||.|+|||...++||.||+|++|.+..++
T Consensus 255 TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 255 TGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred CCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 99999886 9999999999999999999999999999999987654
No 63
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=8.3e-29 Score=270.08 Aligned_cols=285 Identities=28% Similarity=0.485 Sum_probs=241.6
Q ss_pred eeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEe
Q 001295 452 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 531 (1106)
Q Consensus 452 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 531 (1106)
++.+|.++|.+++|+|+++ ++++++.|+.|++||+.+++....+..|...+..+.|.+.. +.+++++.||.|++||
T Consensus 4 ~~~~h~~~i~~~~~~~~~~--~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGK--LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG--TYLASGSSDKTIRLWD 79 (289)
T ss_pred HhcccCCCEEEEEEcCCCC--EEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC--CEEEEEcCCCeEEEEE
Confidence 4678999999999999998 89999999999999999998889999999999899886544 6899999999999999
Q ss_pred CCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCC
Q 001295 532 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP 611 (1106)
Q Consensus 532 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 611 (1106)
+...+....+..+...+.++.|++++. ++++++.++.|++||+.+++....+..+ ..
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~ 136 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPDGR---------------------ILSSSSRDKTIKVWDVETGKCLTTLRGH--TD 136 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCCCC---------------------EEEEecCCCeEEEEECCCcEEEEEeccC--CC
Confidence 998766666666666666666666543 6777777999999999988888888755 44
Q ss_pred CcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccccccccccc
Q 001295 612 ASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMV 691 (1106)
Q Consensus 612 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1106)
.+.+++|+|++.++++++.++.+++||+.++ +....+
T Consensus 137 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~------------------------------------------ 173 (289)
T cd00200 137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTG-KCVATL------------------------------------------ 173 (289)
T ss_pred cEEEEEEcCcCCEEEEEcCCCcEEEEEcccc-ccceeE------------------------------------------
Confidence 7999999999999999888999999998644 110000
Q ss_pred ccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEee
Q 001295 692 SIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK 771 (1106)
Q Consensus 692 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~ 771 (1106)
T Consensus 174 -------------------------------------------------------------------------------- 173 (289)
T cd00200 174 -------------------------------------------------------------------------------- 173 (289)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCC
Q 001295 772 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP 850 (1106)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~ 850 (1106)
. .|...+.+++++|+++.+++++ ++.|++||+.+++.+..+..|
T Consensus 174 ---------------------------------~--~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~ 218 (289)
T cd00200 174 ---------------------------------T--GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH 218 (289)
T ss_pred ---------------------------------e--cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhc
Confidence 0 0455677888888888787777 889999999888888888788
Q ss_pred CCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEe
Q 001295 851 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922 (1106)
Q Consensus 851 ~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd 922 (1106)
...+.+++|++ ++.++++++.||.|++|++.+++.+..+.+|...|.+++|++++.+|++++.|+.|++|+
T Consensus 219 ~~~i~~~~~~~-~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 219 ENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCceEEEEEcC-CCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 88999999999 788999888899999999999999999999999999999999999999999999999996
No 64
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.1e-28 Score=269.27 Aligned_cols=245 Identities=27% Similarity=0.433 Sum_probs=209.5
Q ss_pred cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEE
Q 001295 348 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 427 (1106)
Q Consensus 348 ~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 427 (1106)
+|.+.|++++|+|++++ +++|+.||.|.+|++.+++... .+..|...+..+.|+|++++|
T Consensus 7 ~h~~~i~~~~~~~~~~~-l~~~~~~g~i~i~~~~~~~~~~-------------------~~~~~~~~i~~~~~~~~~~~l 66 (289)
T cd00200 7 GHTGGVTCVAFSPDGKL-LATGSGDGTIKVWDLETGELLR-------------------TLKGHTGPVRDVAASADGTYL 66 (289)
T ss_pred ccCCCEEEEEEcCCCCE-EEEeecCcEEEEEEeeCCCcEE-------------------EEecCCcceeEEEECCCCCEE
Confidence 59999999999999995 8889999999999998876544 257888899999999999999
Q ss_pred EEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEE
Q 001295 428 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 507 (1106)
Q Consensus 428 as~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 507 (1106)
++++.|+.|++||+.+++.+. .+..|...|.++.|+++++ ++++++.|+.|++||+.+++....+..|...+.++
T Consensus 67 ~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 141 (289)
T cd00200 67 ASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141 (289)
T ss_pred EEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEE
Confidence 999999999999999876554 5678988999999999977 78888889999999999999999999999999999
Q ss_pred eccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECC
Q 001295 508 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 587 (1106)
Q Consensus 508 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 587 (1106)
+|++. +.++++++.|+.|++||++..+....+..+...+.++.|++++ +.+++++.+
T Consensus 142 ~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~---------------------~~l~~~~~~ 198 (289)
T cd00200 142 AFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG---------------------EKLLSSSSD 198 (289)
T ss_pred EEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCc---------------------CEEEEecCC
Confidence 98765 4678888889999999998777666666555555555555555 468888889
Q ss_pred CeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 588 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 588 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
+.|++||+.+++.+..+..+ ...+.++.|++++.++++++.+|.+++|+..++
T Consensus 199 ~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 199 GTIKLWDLSTGKCLGTLRGH--ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CcEEEEECCCCceecchhhc--CCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc
Confidence 99999999998888887655 337899999999999999888999999998764
No 65
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=8.6e-30 Score=239.77 Aligned_cols=295 Identities=18% Similarity=0.288 Sum_probs=229.2
Q ss_pred ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295 407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 486 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 486 (1106)
.+.||+.+++.+.++.+|.+|.+|+.|.++.||-...|+.+. ++.||.+.|+|++...+.+ .+++|+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 478999999999999999999999999999999998888776 7999999999999999999 89999999999999
Q ss_pred eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEec-----CCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEE
Q 001295 487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-----DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 561 (1106)
Q Consensus 487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 561 (1106)
|+++|+++..++ ...+|..+.|++.. ++++.+.. .+.|.++|++....
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~~g--n~~l~~tD~~mg~~~~v~~fdi~~~~~------------------------ 132 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSFGG--NLILASTDKQMGYTCFVSVFDIRDDSS------------------------ 132 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeeccCC--cEEEEEehhhcCcceEEEEEEccCChh------------------------
Confidence 999999999988 56788888886554 34443332 23344444432100
Q ss_pred EeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccC
Q 001295 562 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 641 (1106)
Q Consensus 562 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 641 (1106)
++...++...+..+. ..++.+-|.|-+++|++|..||.|.+||+++
T Consensus 133 --------------------------------~~~s~ep~~kI~t~~--skit~a~Wg~l~~~ii~Ghe~G~is~~da~~ 178 (327)
T KOG0643|consen 133 --------------------------------DIDSEEPYLKIPTPD--SKITSALWGPLGETIIAGHEDGSISIYDART 178 (327)
T ss_pred --------------------------------hhcccCceEEecCCc--cceeeeeecccCCEEEEecCCCcEEEEEccc
Confidence 111344455554443 4688899999999999999999999999988
Q ss_pred CchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeE
Q 001295 642 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 721 (1106)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw 721 (1106)
+.+.+...
T Consensus 179 g~~~v~s~------------------------------------------------------------------------ 186 (327)
T KOG0643|consen 179 GKELVDSD------------------------------------------------------------------------ 186 (327)
T ss_pred Cceeeech------------------------------------------------------------------------
Confidence 73221110
Q ss_pred ecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccc
Q 001295 722 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 801 (1106)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 801 (1106)
T Consensus 187 -------------------------------------------------------------------------------- 186 (327)
T KOG0643|consen 187 -------------------------------------------------------------------------------- 186 (327)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCC-cE---
Q 001295 802 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-SI--- 876 (1106)
Q Consensus 802 ~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg-~v--- 876 (1106)
..|...|+.+.+++|..++++++ |.+-++||..+.++++++. -..+|++.+++|.....+..|+.+- .|
T Consensus 187 -----~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT 260 (327)
T KOG0643|consen 187 -----EEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTT 260 (327)
T ss_pred -----hhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccceecccccceEEecCCceeeeeeee
Confidence 01667788888899999999998 8899999999999999987 4557999999995444554444432 11
Q ss_pred ---------EEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCC
Q 001295 877 ---------QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 925 (1106)
Q Consensus 877 ---------~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~ 925 (1106)
+.|++-..+.+..+++|-++|++|+|+|||+..+||++||.|++.-++.
T Consensus 261 ~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 261 STRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 2222223345677899999999999999999999999999999987765
No 66
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.7e-28 Score=301.29 Aligned_cols=252 Identities=14% Similarity=0.181 Sum_probs=201.3
Q ss_pred ccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc-CCC
Q 001295 347 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGS 425 (1106)
Q Consensus 347 ~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~ 425 (1106)
..|.+.|++++|+|+|++ +|+|+.|+.|+|||..+...... ........+. +...|.+++|+| ++.
T Consensus 480 ~~~~~~V~~i~fs~dg~~-latgg~D~~I~iwd~~~~~~~~~-----------~~~~~~~~~~-~~~~v~~l~~~~~~~~ 546 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGEF-FATAGVNKKIKIFECESIIKDGR-----------DIHYPVVELA-SRSKLSGICWNSYIKS 546 (793)
T ss_pred cCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEECCccccccc-----------ccccceEEec-ccCceeeEEeccCCCC
Confidence 448999999999999995 99999999999999864211000 0000000122 345899999998 588
Q ss_pred EEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcC-CCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCe
Q 001295 426 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 504 (1106)
Q Consensus 426 ~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 504 (1106)
+||+++.||+|+|||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++||+.++..+..+..+ ..|
T Consensus 547 ~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v 620 (793)
T PLN00181 547 QVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANI 620 (793)
T ss_pred EEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCe
Confidence 99999999999999999887654 6789999999999997 666 8999999999999999999999888855 678
Q ss_pred EEEeccccCCceEEEEEecCCeEEEEeCCCCC-ceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEE
Q 001295 505 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 583 (1106)
Q Consensus 505 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 583 (1106)
.++.|.+ +++.+|++|+.||.|++||+++.. ....+..|...|.++.|. ++ .++++
T Consensus 621 ~~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~---------------------~~lvs 677 (793)
T PLN00181 621 CCVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DS---------------------STLVS 677 (793)
T ss_pred EEEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CC---------------------CEEEE
Confidence 8898853 456899999999999999998755 344566676677777664 23 36999
Q ss_pred EECCCeEEEEECCCc------ceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 584 AGDDFSIKFWDMDSV------QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 584 ~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
++.|+.|++||+..+ ..+..+.+| ...+.+++|++++.+|++|+.|+.|++|+....
T Consensus 678 ~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh--~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 678 SSTDNTLKLWDLSMSISGINETPLHSFMGH--TNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred EECCCEEEEEeCCCCccccCCcceEEEcCC--CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 999999999999743 566777766 446889999999999999999999999997654
No 67
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.2e-28 Score=302.70 Aligned_cols=321 Identities=12% Similarity=0.155 Sum_probs=240.7
Q ss_pred CCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCC
Q 001295 715 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQP 794 (1106)
Q Consensus 715 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~ 794 (1106)
+|-+++|+............-.+ ..|...|.+++|+|+++++++++.|+.|+||++...... +.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~--~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~--~~------------ 520 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDL--LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKD--GR------------ 520 (793)
T ss_pred hhhhhhhcccceEEEEeeccccc--cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccc--cc------------
Confidence 45566666654332111111111 237889999999999999999999999999997531100 00
Q ss_pred CCCCccccccCCCCCCCCeeEEEEecC-CCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeC
Q 001295 795 PSGIMMTNDVTDSNPEEAVPCFALSKN-DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD 872 (1106)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~v~~l~~s~~-~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~ 872 (1106)
........+ .+...+.+++|++. +.+|++++ ||+|++||+.+++.+..+.+|...|++++|+|.++.+|++|+.
T Consensus 521 -~~~~~~~~~---~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~ 596 (793)
T PLN00181 521 -DIHYPVVEL---ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD 596 (793)
T ss_pred -ccccceEEe---cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC
Confidence 000000001 13567899999874 77899988 9999999999999999999999999999999757899999999
Q ss_pred CCcEEEEEeecceEEEEecCcccCeeEEEEe-cCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEE
Q 001295 873 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFS-HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 951 (1106)
Q Consensus 873 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s-~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 951 (1106)
||.|++||+.++..+..+..| ..|.++.|+ +++.+|++|+.||+|++||+.+.+. .+....+|. ..|..+.
T Consensus 597 Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~----~~~~~~~h~---~~V~~v~ 668 (793)
T PLN00181 597 DGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL----PLCTMIGHS---KTVSYVR 668 (793)
T ss_pred CCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc----cceEecCCC---CCEEEEE
Confidence 999999999999988888765 579999995 5799999999999999999987432 222334554 3789999
Q ss_pred EcCCCcEEEE-EeCCeEEEEecCCc------eEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEe
Q 001295 952 FHQDQIHFLV-VHETQLAIFETTKL------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCR 1024 (1106)
Q Consensus 952 ~s~dg~~l~~-~~d~~v~i~d~~~~------~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~ 1024 (1106)
|. ++.+|++ +.|+.|++||+... ..+..+. +|...+.+++|++++.+|++|+.|++|++|+......+..
T Consensus 669 f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~--gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s 745 (793)
T PLN00181 669 FV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM--GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLS 745 (793)
T ss_pred Ee-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc--CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEE
Confidence 97 5666766 68999999999753 4555554 8899999999999999999999999999999877654433
Q ss_pred eCCCcc--c---CCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEee
Q 001295 1025 INPSAY--L---PAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1069 (1106)
Q Consensus 1025 ~~~~~~--~---~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~ 1069 (1106)
+..... . ...++...|. .++|+| ++..|++|+.||.|+||++
T Consensus 746 ~~~~~~~~~~~~~~~~~~~~V~--~v~ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 746 YKFKTIDPVSGLEVDDASQFIS--SVCWRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EecccCCcccccccCCCCcEEE--EEEEcC-CCCeEEEecCCCcEEEEec
Confidence 221110 0 0011123355 899999 7899999999999999986
No 68
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=6.8e-28 Score=220.59 Aligned_cols=276 Identities=17% Similarity=0.251 Sum_probs=213.0
Q ss_pred cceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCcc-ccccccCCCCcCeEEEE
Q 001295 341 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMP-LQAALVKDPGVSVNRVI 419 (1106)
Q Consensus 341 ~~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~h~~~V~~l~ 419 (1106)
...+.++.....|.+++|+|.|. |.|+|+..++.+|..+..-..+... .+.. ..++ ..-..-+.|.+.|+|.+
T Consensus 23 f~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~----hea~-~~pp~v~~kr~khhkgsiyc~~ 96 (350)
T KOG0641|consen 23 FEAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHA----HEAA-KQPPSVLCKRNKHHKGSIYCTA 96 (350)
T ss_pred eEEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCcccc----cccc-cCCCeEEeeeccccCccEEEEE
Confidence 34566777889999999999999 7999999999999876542222100 0000 0111 11123468999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEEcc--CCceeeeeeeeccccCCeeEEEEcCC---CCceEEEEec-CCCcEEEEeCCCCce
Q 001295 420 WSPDGSLFGVAYSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDIAFSHP---NKQLCVITCG-DDKTIKVWDATNGAK 493 (1106)
Q Consensus 420 ~spdg~~las~~~d~~v~iwd~~--~~~~~~~~~~l~~h~~~V~~~~~s~d---~~~~~l~s~~-~d~~i~iwd~~~~~~ 493 (1106)
|||+|++||+|+.|++|++.-.+ +......-.++.-|.+.|..++|..+ +.. +|++++ .|+.|++-|..+|+.
T Consensus 97 ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~ 175 (350)
T KOG0641|consen 97 WSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQG 175 (350)
T ss_pred ecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCc
Confidence 99999999999999999987554 33333344467889999999999754 222 566655 588999999999999
Q ss_pred eEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEE
Q 001295 494 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 573 (1106)
Q Consensus 494 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 573 (1106)
.+.+.||++.|.++- +-++.++++|+.|.+|++||++-...+..+... +--.|.....+..++
T Consensus 176 ~~a~sghtghilaly---swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~--------------~~~~glessavaav~ 238 (350)
T KOG0641|consen 176 FHALSGHTGHILALY---SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDND--------------FHDGGLESSAVAAVA 238 (350)
T ss_pred ceeecCCcccEEEEE---EecCcEEEccCCCceEEEEeeeccceeeeccCc--------------ccCCCcccceeEEEE
Confidence 999999999999885 345579999999999999999865554433211 111223344677788
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 574 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 574 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
+.|.|+.|++|-.|....+||++.++.++.+..| ...|.|+.|+|...|+++++.|..|++-|+...
T Consensus 239 vdpsgrll~sg~~dssc~lydirg~r~iq~f~ph--sadir~vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 239 VDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPH--SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred ECCCcceeeeccCCCceEEEEeeCCceeeeeCCC--ccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence 8888889999999999999999999999999766 558999999999999999999999999998654
No 69
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=8.8e-29 Score=244.70 Aligned_cols=316 Identities=14% Similarity=0.233 Sum_probs=242.0
Q ss_pred CcceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEE
Q 001295 340 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 419 (1106)
Q Consensus 340 ~~~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 419 (1106)
+.+-...+-|.+.|.++... +++ +.+|++||.++|||.. |+... ++.||.++|..++
T Consensus 95 aP~pl~~~~hdDWVSsv~~~--~~~-IltgsYDg~~riWd~~-Gk~~~-------------------~~~Ght~~ik~v~ 151 (423)
T KOG0313|consen 95 APKPLQCFLHDDWVSSVKGA--SKW-ILTGSYDGTSRIWDLK-GKSIK-------------------TIVGHTGPIKSVA 151 (423)
T ss_pred CCCccccccchhhhhhhccc--Cce-EEEeecCCeeEEEecC-CceEE-------------------EEecCCcceeeeE
Confidence 55566778899999999998 665 8999999999999987 44444 3789999999888
Q ss_pred EccCC---CEEEEEeCCCeEEEEEccCCcee-eeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeE
Q 001295 420 WSPDG---SLFGVAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 495 (1106)
Q Consensus 420 ~spdg---~~las~~~d~~v~iwd~~~~~~~-~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 495 (1106)
|--.. ..|++++.|.++++|.++.++.. .....-.||...|.++...++|. .+++|+.|.+|.||+..+ ....
T Consensus 152 ~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~-~~~~ 228 (423)
T KOG0313|consen 152 WVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVET-DEED 228 (423)
T ss_pred EEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCC-Cccc
Confidence 86533 35999999999999999877643 22223459999999999999999 899999999999999332 2222
Q ss_pred EEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEc
Q 001295 496 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 575 (1106)
Q Consensus 496 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~ 575 (1106)
.+...... ...+... ++ ...++.++..+.+|..+|.++.|++.+
T Consensus 229 ~~E~~s~~-------rrk~~~~------~~-----~~~~r~P~vtl~GHt~~Vs~V~w~d~~------------------ 272 (423)
T KOG0313|consen 229 ELESSSNR-------RRKKQKR------EK-----EGGTRTPLVTLEGHTEPVSSVVWSDAT------------------ 272 (423)
T ss_pred cccccchh-------hhhhhhh------hh-----cccccCceEEecccccceeeEEEcCCC------------------
Confidence 22211110 0000000 00 112345666778888888888888755
Q ss_pred CCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccc
Q 001295 576 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYD 655 (1106)
Q Consensus 576 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 655 (1106)
.+++++-|.+|+.||+.++..+..+.... .++++.++|..++|++|+.|..|++||.+++..
T Consensus 273 ----v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g----------- 334 (423)
T KOG0313|consen 273 ----VIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG----------- 334 (423)
T ss_pred ----ceEeecccceEEEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceeecCCCCCCC-----------
Confidence 38999999999999999999998887653 489999999999999999999999999876610
Q ss_pred cccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceec
Q 001295 656 ASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSL 735 (1106)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~ 735 (1106)
.
T Consensus 335 -------------------------------------------------------------s------------------ 335 (423)
T KOG0313|consen 335 -------------------------------------------------------------S------------------ 335 (423)
T ss_pred -------------------------------------------------------------c------------------
Confidence 0
Q ss_pred ccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeE
Q 001295 736 RLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 815 (1106)
Q Consensus 736 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~ 815 (1106)
+... .+ .+|.+.|.+
T Consensus 336 ----------~v~~-----------------------------------------------------s~--~gH~nwVss 350 (423)
T KOG0313|consen 336 ----------VVSQ-----------------------------------------------------SL--IGHKNWVSS 350 (423)
T ss_pred ----------eeEE-----------------------------------------------------ee--ecchhhhhh
Confidence 0000 01 128888899
Q ss_pred EEEecCCC-EEEEEe-CCeEEEEEcCCCc-eeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEe
Q 001295 816 FALSKNDS-YVMSAS-GGKISLFNMMTFK-TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 881 (1106)
Q Consensus 816 l~~s~~~~-~l~~~s-dg~i~vwd~~~~~-~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~ 881 (1106)
+.++|... .|++++ |+++++||+++.+ .+..+.+|...|.++.|. ++.+|++|+.|.+|+|+.-
T Consensus 351 vkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~--~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 351 VKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN--EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred eecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc--CCceEEeccCcceEEEecc
Confidence 99998665 566777 9999999999877 899999999999999998 5779999999999999864
No 70
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.7e-29 Score=234.98 Aligned_cols=298 Identities=17% Similarity=0.282 Sum_probs=251.9
Q ss_pred cccccceEEEEEcC---CCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEE
Q 001295 740 NLRATKISRLIFTN---SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 816 (1106)
Q Consensus 740 ~~~~~~i~~~~~s~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l 816 (1106)
.+|..+|-.++|+| +|-+|++++.|+.-.+ .+-.+|..+.. +. +|.+.|.+.
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pml----------------------r~g~tgdwigt-fe--ghkgavw~~ 65 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPML----------------------RNGDTGDWIGT-FE--GHKGAVWSA 65 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchh----------------------ccCCCCCcEEe-ee--ccCcceeee
Confidence 67999999999974 8989999999976543 33445655543 33 399999999
Q ss_pred EEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecc-eEEEEecCcc
Q 001295 817 ALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHS 894 (1106)
Q Consensus 817 ~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~-~~~~~l~~h~ 894 (1106)
+++.+....++++ |-+-+|||.-+|..+..|. |..-|.+++|+. |.++|++|+.+..+||||++.. .....+.+|.
T Consensus 66 ~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ght 143 (334)
T KOG0278|consen 66 TLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHT 143 (334)
T ss_pred ecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCC
Confidence 9999988888888 8899999999999999987 888899999999 9999999999999999999874 3567889999
Q ss_pred cCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCC
Q 001295 895 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK 974 (1106)
Q Consensus 895 ~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~ 974 (1106)
+.|..+.|....+.++|++.|++||+||..++..... +.+. ..|.++-+++||++|.++..+.|.+||..+
T Consensus 144 g~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~s--L~~~-------s~VtSlEvs~dG~ilTia~gssV~Fwdaks 214 (334)
T KOG0278|consen 144 GGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQS--LEFN-------SPVTSLEVSQDGRILTIAYGSSVKFWDAKS 214 (334)
T ss_pred CcceeEEEeccCceEEeeccCCceEEEEeccCcEEEE--EecC-------CCCcceeeccCCCEEEEecCceeEEecccc
Confidence 9999999999889999999999999999999765332 2221 368999999999999999999999999999
Q ss_pred ceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCE
Q 001295 975 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNE 1054 (1106)
Q Consensus 975 ~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~ 1054 (1106)
...++.+.. ...|.+..+.|+...+++|++|..++.||+.+|+.+..+. .||.+. |. ++.|+| ||..
T Consensus 215 f~~lKs~k~---P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n------kgh~gp-Vh--cVrFSP-dGE~ 281 (334)
T KOG0278|consen 215 FGLLKSYKM---PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN------KGHFGP-VH--CVRFSP-DGEL 281 (334)
T ss_pred ccceeeccC---ccccccccccCCCceEEecCcceEEEEEeccCCceeeecc------cCCCCc-eE--EEEECC-CCce
Confidence 999888764 5589999999999999999999999999999999987753 233333 66 899999 7999
Q ss_pred EEEEeCCCcEEEEeecCCC--CccCCCCCCCCCC
Q 001295 1055 FALGLSDGGVHVFEPLESE--GKWGVPPPVDNGS 1086 (1106)
Q Consensus 1055 l~t~~~Dg~v~vW~~~~~~--~~~~~~~~~~~~~ 1086 (1106)
.++|+.||+|++|...-++ +.|.-..|-+.|.
T Consensus 282 yAsGSEDGTirlWQt~~~~~~~~~~~~~~ed~~e 315 (334)
T KOG0278|consen 282 YASGSEDGTIRLWQTTPGKTYGLWKCVKPEDDGE 315 (334)
T ss_pred eeccCCCceEEEEEecCCCchhhccccChhhhcc
Confidence 9999999999999998877 5666666664443
No 71
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2.3e-27 Score=222.89 Aligned_cols=276 Identities=16% Similarity=0.248 Sum_probs=229.9
Q ss_pred eeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeE--EEeccCCCeEEEeccccCCceEEEEEecCCeEEE
Q 001295 452 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 529 (1106)
Q Consensus 452 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 529 (1106)
.+++|...|.+++|+-+|. .+++|+.|+++.+|+++..+... ...+|.+.|..++|++... ..+++++.|.+|++
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~--~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~-d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGT--KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP-DLFATASGDKTIRI 91 (313)
T ss_pred HhhhhhhcceEEEEcccCc--eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC-cceEEecCCceEEE
Confidence 4678999999999999999 79999999999999998876554 3568999999999987655 68999999999999
Q ss_pred EeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCC
Q 001295 530 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 609 (1106)
Q Consensus 530 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 609 (1106)
||++..++..........+ .+.|+|+|++++.++.|..|.+.|.++.+.....+..
T Consensus 92 wd~r~~k~~~~i~~~~eni----------------------~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~-- 147 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGENI----------------------NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK-- 147 (313)
T ss_pred EEeccCcEEEEeeccCcce----------------------EEEEcCCCCEEEEecCcccEEEEEecccceeehhccc--
Confidence 9999887776555443322 2456667779999999999999999988877766543
Q ss_pred CCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccccccccc
Q 001295 610 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS 689 (1106)
Q Consensus 610 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1106)
..++-++|+-++.+++.....|.|.|.....- +.+..+
T Consensus 148 -~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL-kpv~si---------------------------------------- 185 (313)
T KOG1407|consen 148 -FEVNEISWNNSNDLFFLTNGLGCVEILSYPSL-KPVQSI---------------------------------------- 185 (313)
T ss_pred -ceeeeeeecCCCCEEEEecCCceEEEEecccc-cccccc----------------------------------------
Confidence 34777899988888887777788887754322 111100
Q ss_pred ccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEE
Q 001295 690 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 769 (1106)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 769 (1106)
T Consensus 186 -------------------------------------------------------------------------------- 185 (313)
T KOG1407|consen 186 -------------------------------------------------------------------------------- 185 (313)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeec
Q 001295 770 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM 848 (1106)
Q Consensus 770 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~ 848 (1106)
+ .|.....||.|+|+|+++|+|+ |-.+.+||++..-+.+.+.
T Consensus 186 -----------------------------------~--AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is 228 (313)
T KOG1407|consen 186 -----------------------------------K--AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS 228 (313)
T ss_pred -----------------------------------c--cCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec
Confidence 0 1777788899999999999999 8999999999999999999
Q ss_pred CCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCC
Q 001295 849 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD 915 (1106)
Q Consensus 849 ~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D 915 (1106)
.+.-+|+.+.||. ||++||+|++|..|-|=++++|..+..++ +.++...|+|+|...+||.++.|
T Consensus 229 RldwpVRTlSFS~-dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 229 RLDWPVRTLSFSH-DGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred cccCceEEEEecc-CcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 9999999999999 99999999999999999999999888886 78889999999999999988776
No 72
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.7e-27 Score=242.48 Aligned_cols=286 Identities=17% Similarity=0.270 Sum_probs=236.4
Q ss_pred cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295 742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 821 (1106)
Q Consensus 742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 821 (1106)
....|.+++|+|...+=++.+..-.+.||+..+. ..... +. .....+.++.|-.|
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~----------------------~~~k~-~s--rFk~~v~s~~fR~D 79 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTR----------------------SVRKT-FS--RFKDVVYSVDFRSD 79 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchh----------------------hhhhh-HH--hhccceeEEEeecC
Confidence 4578999999997766555555566777765421 11110 11 15778999999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEE
Q 001295 822 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 900 (1106)
Q Consensus 822 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 900 (1106)
|+++++|. .|.|+|||+.+...++.+.+|..++..+.|+|+++.++++|++|+.+++||+.+......+.+|++.|.|.
T Consensus 80 G~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g 159 (487)
T KOG0310|consen 80 GRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG 159 (487)
T ss_pred CeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence 99999999 69999999888778899999999999999999999999999999999999999998877999999999999
Q ss_pred EEecCC-CEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEee
Q 001295 901 AFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVK 979 (1106)
Q Consensus 901 ~~s~d~-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~ 979 (1106)
+|+|-. ..++|||.||+|++||+.... ........| .+|..+.|-|.|..+++++...|+|||+.+|....
T Consensus 160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll 231 (487)
T KOG0310|consen 160 DISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLL 231 (487)
T ss_pred ccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCceeh
Confidence 999865 489999999999999998743 233444333 37899999999999999999999999999665544
Q ss_pred ecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEe
Q 001295 980 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1059 (1106)
Q Consensus 980 ~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~ 1059 (1106)
.... .|...|+|+++..+++.|++|+-|+.|+|||+.+.+.+..+. .|.. |. +++.+| |++.++.|.
T Consensus 232 ~~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~----~~~p-----vL--siavs~-dd~t~viGm 298 (487)
T KOG0310|consen 232 TSMF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK----YPGP-----VL--SIAVSP-DDQTVVIGM 298 (487)
T ss_pred hhhh-cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee----cccc-----ee--eEEecC-CCceEEEec
Confidence 4332 489999999999999999999999999999999999998887 4433 44 788888 678999999
Q ss_pred CCCcEEEEeecCCC
Q 001295 1060 SDGGVHVFEPLESE 1073 (1106)
Q Consensus 1060 ~Dg~v~vW~~~~~~ 1073 (1106)
.||.+.+=+....+
T Consensus 299 snGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 299 SNGLVSIRRREVKK 312 (487)
T ss_pred ccceeeeehhhccc
Confidence 99998887655444
No 73
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=1.6e-27 Score=235.80 Aligned_cols=311 Identities=16% Similarity=0.291 Sum_probs=228.7
Q ss_pred cccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCC-ceEEEEEecCCeEEEEeCC
Q 001295 455 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKEN-IQFIFSTALDGKIKAWLYD 533 (1106)
Q Consensus 455 ~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~ 533 (1106)
-|.+.|.++... ++ .++||+.||.+++|| ..|+.+..+.||.++|.+++|..... ...|++++.|.++++|.++
T Consensus 103 ~hdDWVSsv~~~--~~--~IltgsYDg~~riWd-~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~ 177 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SK--WILTGSYDGTSRIWD-LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN 177 (423)
T ss_pred cchhhhhhhccc--Cc--eEEEeecCCeeEEEe-cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence 488899999887 45 799999999999999 78999999999999999888754332 1246677777777766554
Q ss_pred CCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCc
Q 001295 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPAS 613 (1106)
Q Consensus 534 ~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v 613 (1106)
.+.... +.+.... +|...|
T Consensus 178 ~~~~~~-----------------------------------------------------------~~~~~~~--GHk~~V 196 (423)
T KOG0313|consen 178 VGENKV-----------------------------------------------------------KALKVCR--GHKRSV 196 (423)
T ss_pred Cchhhh-----------------------------------------------------------hHHhHhc--ccccce
Confidence 321110 0111111 345589
Q ss_pred CeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccccccccccccc
Q 001295 614 PRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSI 693 (1106)
Q Consensus 614 ~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1106)
.+++..++|..+++|+.|.+|.||+..+. ....++....... + ........
T Consensus 197 ~sVsv~~sgtr~~SgS~D~~lkiWs~~~~--~~~~~E~~s~~rr-------------k-----~~~~~~~~--------- 247 (423)
T KOG0313|consen 197 DSVSVDSSGTRFCSGSWDTMLKIWSVETD--EEDELESSSNRRR-------------K-----KQKREKEG--------- 247 (423)
T ss_pred eEEEecCCCCeEEeecccceeeecccCCC--ccccccccchhhh-------------h-----hhhhhhcc---------
Confidence 99999999999999999999999994332 1111111000000 0 00000000
Q ss_pred CCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeecc
Q 001295 694 PGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ 773 (1106)
Q Consensus 694 ~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~ 773 (1106)
..+...+.+ .+|...|.++.|++ ...+++++.|.+|+.||+.
T Consensus 248 -----------------------------------~~r~P~vtl--~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDle 289 (423)
T KOG0313|consen 248 -----------------------------------GTRTPLVTL--EGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLE 289 (423)
T ss_pred -----------------------------------cccCceEEe--cccccceeeEEEcC-CCceEeecccceEEEEEee
Confidence 000000011 45999999999999 5568999999999999887
Q ss_pred ccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCc---eeeeecC
Q 001295 774 RTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK---TMATFMP 849 (1106)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~---~~~~~~~ 849 (1106)
. |....... ......++.++|..++|++|+ |..|++||-+++. ..+++.+
T Consensus 290 t----------------------g~~~~~~~----~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~g 343 (423)
T KOG0313|consen 290 T----------------------GGLKSTLT----TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIG 343 (423)
T ss_pred c----------------------ccceeeee----cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeec
Confidence 4 33222211 467789999999999999998 9999999988643 3467899
Q ss_pred CCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecce-EEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCC
Q 001295 850 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 925 (1106)
Q Consensus 850 ~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~-~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~ 925 (1106)
|.+-|.++.|+|.+..+|++|+.|+++++||+++.+ .+..+.+|.+.|.++.|. ++..|+|||.|.+|+|+.-..
T Consensus 344 H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 344 HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEecccc
Confidence 999999999999888999999999999999999877 899999999999999997 667999999999999987543
No 74
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.2e-28 Score=246.36 Aligned_cols=260 Identities=18% Similarity=0.275 Sum_probs=216.7
Q ss_pred CCCCCCCCcceeeecc-CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCC
Q 001295 333 FSTPEDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP 411 (1106)
Q Consensus 333 ~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h 411 (1106)
..-.+.+|......+. |..+|..+.|-++... |++|+.|..|++|++..++.-.. .++.|-
T Consensus 157 ~~v~~~lpS~~~~~ld~h~gev~~v~~l~~sdt-latgg~Dr~Ik~W~v~~~k~~~~-----------------~tLaGs 218 (459)
T KOG0288|consen 157 HFVEDTLPSRALFVLDAHEGEVHDVEFLRNSDT-LATGGSDRIIKLWNVLGEKSELI-----------------STLAGS 218 (459)
T ss_pred hhhhcccchhhhhhhhccccccceeEEccCcch-hhhcchhhhhhhhhcccchhhhh-----------------hhhhcc
Confidence 3344667887777777 9999999999999774 99999999999999987652111 147888
Q ss_pred CcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC
Q 001295 412 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 491 (1106)
Q Consensus 412 ~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 491 (1106)
.+.|+.+.|.++++++++++.|+.+++|++...+... +|.||++.|+++.|..... .+++|+.|.+|++||+...
T Consensus 219 ~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~ 293 (459)
T KOG0288|consen 219 LGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKA 293 (459)
T ss_pred CCCcceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhh
Confidence 8999999999999999999999999999999877555 7999999999999988776 5999999999999999999
Q ss_pred ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeE
Q 001295 492 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 571 (1106)
Q Consensus 492 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~ 571 (1106)
.|.+++- ....+..|+.. ...+++|-.|+.|++||.++.........++ .|+++..++++.
T Consensus 294 ~C~kt~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~------------- 354 (459)
T KOG0288|consen 294 YCSKTVL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGL------------- 354 (459)
T ss_pred heecccc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCe-------------
Confidence 8887764 23445555543 2568999999999999999988877776665 567666666665
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCC--CCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 572 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG--LPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 572 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
.+++++.|.++.+.|+++.+....+...+. ....+.+.|||++.|+++|+.||.|+||++.++
T Consensus 355 --------~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 355 --------ELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred --------EEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc
Confidence 688899999999999999998888865432 234788999999999999999999999999888
No 75
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.4e-27 Score=229.19 Aligned_cols=312 Identities=14% Similarity=0.190 Sum_probs=233.3
Q ss_pred CcceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCC----ccccccccCCCCcCe
Q 001295 340 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACS----MPLQAALVKDPGVSV 415 (1106)
Q Consensus 340 ~~~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~----~~~~~~~~~~h~~~V 415 (1106)
..+..++..|+.++.+.+|||||. |+|||+.|..|+|.|++..-.. . +.-++..+. .|.. .++-.|.+.|
T Consensus 102 ~yEt~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlak--s--~~~em~~~~~qa~hPvI-RTlYDH~dev 175 (430)
T KOG0640|consen 102 EYETKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAK--S--KPKEMISGDTQARHPVI-RTLYDHVDEV 175 (430)
T ss_pred ccceEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhh--c--chhhhccCCcccCCceE-eehhhccCcc
Confidence 334556667999999999999999 7999999999999999731100 0 001111111 1222 2578999999
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeE
Q 001295 416 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 495 (1106)
Q Consensus 416 ~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 495 (1106)
+++.|+|....|++|+.|++|+++|+......+.++.++ ...+|.++.|+|.|. +++.|.+-.++++||+.+-++..
T Consensus 176 n~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~Qcfv 252 (430)
T KOG0640|consen 176 NDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFV 252 (430)
T ss_pred cceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEee
Confidence 999999999999999999999999998655444333343 456899999999999 88999999999999999988765
Q ss_pred EE---eccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeC-CCCeeEEEEEecCCCeEEEeeeccceeE
Q 001295 496 IF---EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGV 571 (1106)
Q Consensus 496 ~~---~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~i~~ 571 (1106)
.- .+|.+.|+++.++ +++++.++++.||.|++||--+.+++.++.. |++ ..+.+
T Consensus 253 sanPd~qht~ai~~V~Ys--~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~g--------------------sevcS 310 (430)
T KOG0640|consen 253 SANPDDQHTGAITQVRYS--STGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGG--------------------SEVCS 310 (430)
T ss_pred ecCcccccccceeEEEec--CCccEEEEeccCCcEEeeccccHHHHHHHHhhcCC--------------------ceeee
Confidence 43 4699999999975 4558999999999999999877666654432 222 24444
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCC---CcCeEEEccCCCEEEEEeC-CCcEEEEEccCCchhhh
Q 001295 572 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP---ASPRIRFNKDGCLLAVSTN-DNGIKILATSDGIRLLR 647 (1106)
Q Consensus 572 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---~v~~v~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~ 647 (1106)
..|..+++++++.+.|..+++|.+.+++++..+.+-+..+ .-+...|+....+++.-.. .+.+.-||.+++.+.
T Consensus 311 a~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~-- 388 (430)
T KOG0640|consen 311 AVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRV-- 388 (430)
T ss_pred EEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhh--
Confidence 4455555589999999999999999999999987653322 2234567777777665543 467888888776221
Q ss_pred hhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCC
Q 001295 648 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS 727 (1106)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~ 727 (1106)
.+|.
T Consensus 389 -----------------------------------------------------------------------~l~s----- 392 (430)
T KOG0640|consen 389 -----------------------------------------------------------------------ALLS----- 392 (430)
T ss_pred -----------------------------------------------------------------------hhcc-----
Confidence 1111
Q ss_pred CCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeec
Q 001295 728 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKW 772 (1106)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~ 772 (1106)
.+|.+.+..+.-+|.+..+++++.|..++.|--
T Consensus 393 ------------lgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 393 ------------LGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred ------------cCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 238888999999999999999999999999953
No 76
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2e-27 Score=222.28 Aligned_cols=287 Identities=18% Similarity=0.255 Sum_probs=227.4
Q ss_pred EEEEEec--CCCeEEEEEec-----cCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc-CCC
Q 001295 354 MSMDFHP--VQQTLLLVGTN-----VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGS 425 (1106)
Q Consensus 354 ~~~~~sp--~g~~llatg~~-----dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~ 425 (1106)
.++.||| .++..+|++.. .|++.|-++..++.+.. +.-+ .-++.+..++||+ ...
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s~---------------d~~D~LfdV~Wse~~e~ 74 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQSY---------------DTEDGLFDVAWSENHEN 74 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEee---------------ecccceeEeeecCCCcc
Confidence 5678888 45533444433 47899999975554432 2222 2355899999999 456
Q ss_pred EEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeE
Q 001295 426 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 505 (1106)
Q Consensus 426 ~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 505 (1106)
.+++++.||+++|||+.- .-.++..++.|...|.++.|++-.+. .+++++.|++|++|+...++.++++.||...|.
T Consensus 75 ~~~~a~GDGSLrl~d~~~--~s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLTM--PSKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred eEEEEecCceEEEeccCC--CCcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 778889999999999543 33456678999999999999998776 678889999999999999999999999999999
Q ss_pred EEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEE
Q 001295 506 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 585 (1106)
Q Consensus 506 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 585 (1106)
...|+|... +++++++.|+++++||++.......+..|...+.++.|+.-.. +.+++|+
T Consensus 152 ~a~~sp~~~-nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~--------------------~vl~Tg~ 210 (311)
T KOG0277|consen 152 QAAFSPHIP-NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNH--------------------NVLATGG 210 (311)
T ss_pred EEecCCCCC-CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCC--------------------cEEEecC
Confidence 999998654 7999999999999999999888878888888888887776554 4688999
Q ss_pred CCCeEEEEECCCc-ceeEEEccCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCC
Q 001295 586 DDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 663 (1106)
Q Consensus 586 ~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (1106)
.|+.|+.||++.- .++..+.+| .-.|+.+.||| ...+|++++.|-+++|||...+...+.....|+.-+...
T Consensus 211 vd~~vr~wDir~~r~pl~eL~gh--~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~---- 284 (311)
T KOG0277|consen 211 VDNLVRGWDIRNLRTPLFELNGH--GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGL---- 284 (311)
T ss_pred CCceEEEEehhhccccceeecCC--ceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecc----
Confidence 9999999999874 456666655 44799999999 567899999999999999987767777777777644321
Q ss_pred CCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEec
Q 001295 664 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 723 (1106)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~ 723 (1106)
.++ ..+...+++.+.|..+.||+.
T Consensus 285 --Dws----------------------------------~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 285 --DWS----------------------------------LFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred --ccc----------------------------------cccCceeeecccccceeeecc
Confidence 111 125678899999999999984
No 77
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.6e-27 Score=241.55 Aligned_cols=246 Identities=22% Similarity=0.266 Sum_probs=200.1
Q ss_pred cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEE
Q 001295 348 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 427 (1106)
Q Consensus 348 ~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 427 (1106)
...+.|.+++|||...|=+|+.+ .-.|.||+..+...... +..-...|++++|-.||++|
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG~Ll 83 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDGRLL 83 (487)
T ss_pred cccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCCeEE
Confidence 35689999999997766455544 36899999887665542 34456689999999999999
Q ss_pred EEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEE
Q 001295 428 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 507 (1106)
Q Consensus 428 as~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 507 (1106)
|+|+..|.|+|+|+.+...++ .+.+|+.+|..+.|+|++.. .+++|++|+.+++||+.+......+.+|++.|.|.
T Consensus 84 aaGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g 159 (487)
T KOG0310|consen 84 AAGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG 159 (487)
T ss_pred EccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence 999999999999976644444 58899999999999999887 89999999999999999999877999999999999
Q ss_pred eccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECC
Q 001295 508 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 587 (1106)
Q Consensus 508 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 587 (1106)
+|++.. +.+++|||.||.|++||++.......--.|+.+|.++.+-|.|. .+++++ .
T Consensus 160 ~~~~~~-~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs---------------------~iasAg-G 216 (487)
T KOG0310|consen 160 DISPAN-DHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGS---------------------LIASAG-G 216 (487)
T ss_pred ccccCC-CeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCC---------------------EEEEcC-C
Confidence 998754 48999999999999999998754444445777788887777765 455544 5
Q ss_pred CeEEEEECCCccee-EEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 588 FSIKFWDMDSVQLL-TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 588 ~~i~iwd~~~~~~~-~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
+.|++||+.+|... ..+.. |...|+|+.+..++..|++|+-|+.+++||+.+-
T Consensus 217 n~vkVWDl~~G~qll~~~~~--H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~ 270 (487)
T KOG0310|consen 217 NSVKVWDLTTGGQLLTSMFN--HNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY 270 (487)
T ss_pred CeEEEEEecCCceehhhhhc--ccceEEEEEeecCCceEeecccccceEEEEccce
Confidence 68999999865544 44332 3568999999999999999999999999996443
No 78
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.96 E-value=8.1e-26 Score=236.72 Aligned_cols=511 Identities=18% Similarity=0.223 Sum_probs=333.6
Q ss_pred eeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEE
Q 001295 493 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 572 (1106)
Q Consensus 493 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~ 572 (1106)
.+..+.+|...|+.+.|++-.| .+|++|+.|..|++|.+..+. ...+... .+..|+.+-.+-++
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D-~LLAT~S~D~~VKiW~lp~g~-~q~LSap--------------e~~~g~~~~~vE~l 134 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFAD-ELLATCSRDEPVKIWKLPRGH-SQKLSAP--------------EIDVGGGNVIVECL 134 (1012)
T ss_pred ccceeecccceeeccCccccch-hhhhcccCCCeeEEEecCCCc-ccccCCc--------------ceeecCCceEEEEe
Confidence 4567889999999999998877 599999999999999887321 1111111 22333444467778
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhccc
Q 001295 573 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 652 (1106)
Q Consensus 573 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 652 (1106)
.|+|...-++..+..|.+++||+.+++.+..+.+| ...|.++.|+.||.+|++++.|..|+|||.+...+.++..++|
T Consensus 135 ~fHpTaDgil~s~a~g~v~i~D~stqk~~~el~~h--~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H 212 (1012)
T KOG1445|consen 135 RFHPTADGILASGAHGSVYITDISTQKTAVELSGH--TDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGH 212 (1012)
T ss_pred ecccCcCceEEeccCceEEEEEcccCceeecccCC--chhhhccccccCCceEeeecCCcceEEeCCccCCCcccccccc
Confidence 88887777888888999999999999999888877 4579999999999999999999999999999877888887877
Q ss_pred ccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCC----CceeeEecCCCCC
Q 001295 653 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN----DKSKVWKLTELSE 728 (1106)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----~~i~vw~~~~~~~ 728 (1106)
...... .+.+..+.+.+++.+.+ ..+++||......
T Consensus 213 ~~~rds----------------------------------------Rv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~ 252 (1012)
T KOG1445|consen 213 GGMRDS----------------------------------------RVLWAGNWERLISTGFTTKRIREVRAYDTRKFGA 252 (1012)
T ss_pred ccchhh----------------------------------------eeeeccchhhhhhcccchhhheeeeeeeccccCC
Confidence 653110 11112223455555543 4688898876544
Q ss_pred CccceecccCccccccceEEEEEcCCCceEEEeec-CceEEEeecccc--------------------------------
Q 001295 729 PNQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRT-------------------------------- 775 (1106)
Q Consensus 729 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~-------------------------------- 775 (1106)
......+. ....|.---|.||.+.++.++. +..+..+.+...
T Consensus 253 p~~tleld-----~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~ 327 (1012)
T KOG1445|consen 253 PVHTLELD-----SSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDG 327 (1012)
T ss_pred cceeEEee-----cccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhcchhhhccceecchhhhhhcch
Confidence 33322221 2344555567888877666555 566766665432
Q ss_pred ---------------------------------------------------------cc--------C--------C---
Q 001295 776 ---------------------------------------------------------ER--------N--------S--- 779 (1106)
Q Consensus 776 ---------------------------------------------------------~~--------~--------~--- 779 (1106)
+. + +
T Consensus 328 EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~ 407 (1012)
T KOG1445|consen 328 EVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPK 407 (1012)
T ss_pred hhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceecCccccccccccCchhccCCCCCCCCCCCcc
Confidence 00 0 0
Q ss_pred -------------------------CCccccc--c--Cc------c-c----cCCCCC----------------------
Q 001295 780 -------------------------SGKATAS--V--AP------Q-L----WQPPSG---------------------- 797 (1106)
Q Consensus 780 -------------------------~~~~~~~--~--~~------~-~----w~~~~~---------------------- 797 (1106)
.+..... . .+ + + +....|
T Consensus 408 ~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~ 487 (1012)
T KOG1445|consen 408 VAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTIS 487 (1012)
T ss_pred cccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcchhhhhhcccccccccCccCCCcccccccCCCCCccccC
Confidence 0000000 0 00 0 0 000000
Q ss_pred -----------Cccc------c--------ccC----------------------------------------C-CCCCC
Q 001295 798 -----------IMMT------N--------DVT----------------------------------------D-SNPEE 811 (1106)
Q Consensus 798 -----------~~~~------~--------~~~----------------------------------------~-~~~~~ 811 (1106)
..++ . ..+ | .+|.+
T Consensus 488 ~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks 567 (1012)
T KOG1445|consen 488 PEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKS 567 (1012)
T ss_pred CCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCccccccccccccccccceeeccchheeeccCccccch
Confidence 0000 0 000 0 00100
Q ss_pred C-e------------eEEEEecCCCEEEE---EeCCeEEEEEcCC-Cceeee-ecC--CCCCeeEEEEecCCCceEEEee
Q 001295 812 A-V------------PCFALSKNDSYVMS---ASGGKISLFNMMT-FKTMAT-FMP--PPPAATFLAFHPQDNNIIAIGM 871 (1106)
Q Consensus 812 ~-v------------~~l~~s~~~~~l~~---~sdg~i~vwd~~~-~~~~~~-~~~--~~~~v~~l~~s~~d~~~la~g~ 871 (1106)
. | .+=.|..+.+++|+ |+.|.|.||++.. |++.-. +.+ ....|+.+.|.|-|...||+++
T Consensus 568 ~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ 647 (1012)
T KOG1445|consen 568 AHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVAT 647 (1012)
T ss_pred hhhhhhhcccccCCCccCceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecc
Confidence 0 0 01123334455553 3478999999974 332211 111 3456999999999999999999
Q ss_pred CCCcEEEEEeecc-------eEEEEecCcccCeeEEEEecC-CCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCC
Q 001295 872 DDSSIQIYNVRVD-------EVKSKLKGHSKRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT 943 (1106)
Q Consensus 872 ~dg~v~iwd~~~~-------~~~~~l~~h~~~V~~l~~s~d-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 943 (1106)
+||.|++|.+..+ ..-..+.+|...|+++.|+|- ...|++++.|.+|++||+.+.+. ...+.+|..
T Consensus 648 ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~-----~~~l~gHtd- 721 (1012)
T KOG1445|consen 648 DDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL-----YSRLVGHTD- 721 (1012)
T ss_pred cCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh-----hheeccCcC-
Confidence 9999999999764 244678899999999999985 46899999999999999998553 445667775
Q ss_pred CCCCceEEEcCCCcEEEE-EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCC----eEEEEEcCC
Q 001295 944 AQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----TVCVFSAAN 1018 (1106)
Q Consensus 944 ~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg----~i~vwd~~~ 1018 (1106)
.|..++|||||+.+|+ +.|++|++|+.++++..-.-....-...-..|.|.-||+++++.+.|. .|.+||.++
T Consensus 722 --qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 722 --QIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred --ceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 8999999999999999 899999999998775422111001123345677888999988777664 588999876
Q ss_pred ceeE--EeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCCCccCCCCCCC
Q 001295 1019 LKLR--CRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVD 1083 (1106)
Q Consensus 1019 ~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~~~~~~~~~~~ 1083 (1106)
.... .+.. + +..-.++--.|.++.+-++++|-.|..|+++++-.....+-...||.
T Consensus 800 l~~~pl~t~~----l-----Dvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~ 857 (1012)
T KOG1445|consen 800 LDLRPLYTQV----L-----DVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFM 857 (1012)
T ss_pred ccCCcceeee----e-----cccCccccccccCCCceEEEecCCCceEEEEEecCCCceeeeccccc
Confidence 5422 2111 0 00011223345565566788999999999999987775555555543
No 79
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=4.5e-27 Score=238.81 Aligned_cols=269 Identities=18% Similarity=0.269 Sum_probs=216.1
Q ss_pred eeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeecc-CcCCccccccccCCCCcCeEEEEEccC
Q 001295 345 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDL-GACSMPLQAALVKDPGVSVNRVIWSPD 423 (1106)
Q Consensus 345 ~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~~h~~~V~~l~~spd 423 (1106)
..-.|.-.|+||+++||+++ .++++.+|+|.=|++.+|+.... ..+--++ .....+....- .+|...|.+++.|+|
T Consensus 137 ~~~~H~~s~~~vals~d~~~-~fsask~g~i~kw~v~tgk~~~~-i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~D 213 (479)
T KOG0299|consen 137 VIGKHQLSVTSVALSPDDKR-VFSASKDGTILKWDVLTGKKDRY-IIERDEVLKSHGNPLKESR-KGHVKEILTLAVSSD 213 (479)
T ss_pred eeccccCcceEEEeeccccc-eeecCCCcceeeeehhcCccccc-ccccchhhhhccCCCCccc-ccccceeEEEEEcCC
Confidence 33449999999999999997 88999999999999999986521 0000000 00112222222 489999999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCC
Q 001295 424 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 503 (1106)
Q Consensus 424 g~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 503 (1106)
|+|||+|+.|..|.||+..+.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|+++....+.++-||...
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHqd~ 288 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQDG 288 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCccc
Confidence 9999999999999999999988776 6899999999999976655 6899999999999999999999999999999
Q ss_pred eEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEE
Q 001295 504 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 583 (1106)
Q Consensus 504 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 583 (1106)
|.++...... ..+-+|+.|+++++|++.. +....+.++...+.+++|-.+.. +++
T Consensus 289 v~~IdaL~re--R~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~H----------------------fvs 343 (479)
T KOG0299|consen 289 VLGIDALSRE--RCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDEH----------------------FVS 343 (479)
T ss_pred eeeechhccc--ceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecccc----------------------eee
Confidence 9999864333 4555566999999999943 55556677777788888877664 999
Q ss_pred EECCCeEEEEECCCcceeEEEccC-C---------CCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhh
Q 001295 584 AGDDFSIKFWDMDSVQLLTSIDAD-G---------GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 646 (1106)
Q Consensus 584 ~~~d~~i~iwd~~~~~~~~~~~~~-~---------~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 646 (1106)
|+.+|.|.+|++...+++.+.... + +..+|++++..|...++++|+.+|.|++|-+.++.+.+
T Consensus 344 GSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i 416 (479)
T KOG0299|consen 344 GSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAI 416 (479)
T ss_pred ccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccc
Confidence 999999999999999888776421 1 11278899999999999999999999999998885433
No 80
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=2.2e-26 Score=216.86 Aligned_cols=235 Identities=13% Similarity=0.107 Sum_probs=198.8
Q ss_pred eeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCC
Q 001295 345 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 424 (1106)
Q Consensus 345 ~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 424 (1106)
.+.+|..+++.+.|+.+|. ||.+++.|.++.||--.+|+.+.+ +.||++.|+|+..+.+.
T Consensus 5 ~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~s 64 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWDS 64 (327)
T ss_pred ccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCCc
Confidence 4556999999999999999 799999999999999989999884 79999999999999999
Q ss_pred CEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEe----cCCCcEEEEeCC-------CCce
Q 001295 425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC----GDDKTIKVWDAT-------NGAK 493 (1106)
Q Consensus 425 ~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~----~~d~~i~iwd~~-------~~~~ 493 (1106)
++|++|+.|.++++||+++|+++... .-..+|..+.|+++|.. .+++. +..+.|.++|++ ..++
T Consensus 65 ~~liTGSAD~t~kLWDv~tGk~la~~----k~~~~Vk~~~F~~~gn~-~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep 139 (327)
T KOG0643|consen 65 KHLITGSADQTAKLWDVETGKQLATW----KTNSPVKRVDFSFGGNL-ILASTDKQMGYTCFVSVFDIRDDSSDIDSEEP 139 (327)
T ss_pred ceeeeccccceeEEEEcCCCcEEEEe----ecCCeeEEEeeccCCcE-EEEEehhhcCcceEEEEEEccCChhhhcccCc
Confidence 99999999999999999999988743 24678999999999984 23332 345789999998 4566
Q ss_pred eEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCcee-EeeCCCCeeEEEEEecCCCeEEEeeeccceeEE
Q 001295 494 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 572 (1106)
Q Consensus 494 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~ 572 (1106)
...+..+...++.+.|.+.. +.|++|..||.|..||++++.... ....|...|+.+.+++|..
T Consensus 140 ~~kI~t~~skit~a~Wg~l~--~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T-------------- 203 (327)
T KOG0643|consen 140 YLKIPTPDSKITSALWGPLG--ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT-------------- 203 (327)
T ss_pred eEEecCCccceeeeeecccC--CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc--------------
Confidence 78888889999999997665 799999999999999999875544 4456666677776666665
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeC
Q 001295 573 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN 630 (1106)
Q Consensus 573 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 630 (1106)
++++++.|.+-++||..+-+.++++... .+|++.+++|....++.|+.
T Consensus 204 -------~FiT~s~Dttakl~D~~tl~v~Kty~te---~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 204 -------YFITGSKDTTAKLVDVRTLEVLKTYTTE---RPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred -------eEEecccCccceeeeccceeeEEEeeec---ccccceecccccceEEecCC
Confidence 8999999999999999999999998754 36999999998777777764
No 81
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.7e-27 Score=261.38 Aligned_cols=272 Identities=14% Similarity=0.174 Sum_probs=205.8
Q ss_pred cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEE------------------------------e--------
Q 001295 348 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL------------------------------R-------- 389 (1106)
Q Consensus 348 ~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~------------------------------~-------- 389 (1106)
.|.+.||++.||+||+| ||+|+.||.|+||.+...+.... +
T Consensus 265 ah~gaIw~mKFS~DGKy-LAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKY-LASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCCce-eeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 49999999999999996 99999999999999876211100 0
Q ss_pred ---eeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEc
Q 001295 390 ---NFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS 466 (1106)
Q Consensus 390 ---~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s 466 (1106)
...+.+......+.+...+.||.+.|..+.||.++ +|++++.|++|++|++...++++ ...|.+.|+||+|+
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~----~F~HndfVTcVaFn 418 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLK----VFSHNDFVTCVAFN 418 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceee----EEecCCeeEEEEec
Confidence 00000000001122334588999999999999765 78899999999999999988887 34699999999999
Q ss_pred CCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCC
Q 001295 467 HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR 546 (1106)
Q Consensus 467 ~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 546 (1106)
|-+.. +|++|+-||.||||++...+.+.-.. -..-|+++||.|+ |+..+.|+.+|.+++|+............+
T Consensus 419 PvDDr-yFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~Pd--Gk~avIGt~~G~C~fY~t~~lk~~~~~~I~-- 492 (712)
T KOG0283|consen 419 PVDDR-YFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPD--GKGAVIGTFNGYCRFYDTEGLKLVSDFHIR-- 492 (712)
T ss_pred ccCCC-cEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccC--CceEEEEEeccEEEEEEccCCeEEEeeeEe--
Confidence 97776 99999999999999998887665544 3488999998654 689999999999999998865544322111
Q ss_pred eeEEEEEecCCCeEEEeeeccceeEEEEcCCC-CEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEE
Q 001295 547 WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL 625 (1106)
Q Consensus 547 ~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 625 (1106)
-.+++-. ..+.|+.+.+.|.. ..+++.+.|..|||||.++..++..+++......-....|+.||++|
T Consensus 493 --------~~~~Kk~---~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~I 561 (712)
T KOG0283|consen 493 --------LHNKKKK---QGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHI 561 (712)
T ss_pred --------eccCccc---cCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEE
Confidence 1100000 01134445554433 25888999999999999999999999877666666789999999999
Q ss_pred EEEeCCCcEEEEEccCC
Q 001295 626 AVSTNDNGIKILATSDG 642 (1106)
Q Consensus 626 ~~~~~dg~i~iwd~~~~ 642 (1106)
+++++|..|++|+....
T Consensus 562 Vs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 562 VSASEDSWVYIWKNDSF 578 (712)
T ss_pred EEeecCceEEEEeCCCC
Confidence 99999999999997543
No 82
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=4.3e-27 Score=264.84 Aligned_cols=304 Identities=18% Similarity=0.252 Sum_probs=240.1
Q ss_pred cccceEEEEEcCCCceEEEee--cCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEe
Q 001295 742 RATKISRLIFTNSGNAILALA--SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 819 (1106)
Q Consensus 742 ~~~~i~~~~~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s 819 (1106)
+...|.++..+|+|..+++++ .|+.++||+...-.. ....++..-...+. .+. .|...|.|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l~-~m~--~h~~sv~CVR~S 78 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHLC-TMD--DHDGSVNCVRFS 78 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhhe-eec--cccCceeEEEEC
Confidence 455689999999999999999 799999998753110 11122222111111 122 399999999999
Q ss_pred cCCCEEEEEe-CCeEEEEEcCC------------------CceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEE
Q 001295 820 KNDSYVMSAS-GGKISLFNMMT------------------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 880 (1106)
Q Consensus 820 ~~~~~l~~~s-dg~i~vwd~~~------------------~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd 880 (1106)
|||++||+|+ |+.|.||+... .+....+.+|...|..++|+| ++.+||+++.|++|.||+
T Consensus 79 ~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn 157 (942)
T KOG0973|consen 79 PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWN 157 (942)
T ss_pred CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEc
Confidence 9999999999 68899999762 235677889999999999999 999999999999999999
Q ss_pred eecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEE
Q 001295 881 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 960 (1106)
Q Consensus 881 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~ 960 (1106)
..+.+++.++++|.+.|..+.|.|-|+++||-+.|++|+||++..+...+ .+..+-.+.........+.|||||++|+
T Consensus 158 ~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k--~It~pf~~~~~~T~f~RlSWSPDG~~la 235 (942)
T KOG0973|consen 158 AKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK--SITKPFEESPLTTFFLRLSWSPDGHHLA 235 (942)
T ss_pred cccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE--eeccchhhCCCcceeeecccCCCcCeec
Confidence 99999999999999999999999999999999999999999987754432 2222223333345678899999999999
Q ss_pred E--Ee---CCeEEEEecCCceEeeecccCCCCCCeeEEEECC-----CCC------------EEEEEEcCCeEEEEEcCC
Q 001295 961 V--VH---ETQLAIFETTKLECVKQWVPRESSAPITHATFSC-----DSQ------------LVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus 961 ~--~~---d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~-----d~~------------~l~t~s~Dg~i~vwd~~~ 1018 (1106)
+ +. -..+.|.+-.+.+.-..+. +|..++.++.|+| ..+ .+|+|+.|++|.||....
T Consensus 236 s~nA~n~~~~~~~IieR~tWk~~~~Lv--GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 236 SPNAVNGGKSTIAIIERGTWKVDKDLV--GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred chhhccCCcceeEEEecCCceeeeeee--cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 8 32 2368888888887777776 8999999999998 111 588999999999999877
Q ss_pred ceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295 1019 LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus 1019 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
.+.+..+. . +. + -..+.++|+| ||..|+++|.||+|.+..++..+
T Consensus 314 ~RPl~vi~--~-lf----~--~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 314 PRPLFVIH--N-LF----N--KSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCchhhhh--h-hh----c--CceeeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence 76664433 1 11 1 2344999999 79999999999999999998776
No 83
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.6e-25 Score=217.91 Aligned_cols=288 Identities=22% Similarity=0.332 Sum_probs=226.1
Q ss_pred ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEec--CCCcEE
Q 001295 407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG--DDKTIK 484 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~--~d~~i~ 484 (1106)
.+..-.+.|.++.|+++|.+|++++.|.+++|||..+++.++ ++..+.-.|..++|...... ++.++ .|.+|+
T Consensus 9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---ti~skkyG~~~~~Fth~~~~--~i~sStk~d~tIr 83 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---TINSKKYGVDLACFTHHSNT--VIHSSTKEDDTIR 83 (311)
T ss_pred ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---EeecccccccEEEEecCCce--EEEccCCCCCceE
Confidence 345567799999999999999999999999999999998777 56667778999999888774 44444 489999
Q ss_pred EEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEee
Q 001295 485 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 564 (1106)
Q Consensus 485 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~ 564 (1106)
.-++.+.+.++.|.||...|.+++.+|.. ..+++++.|++|++||++..++...+.....
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~------------------ 143 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR------------------ 143 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecCCC------------------
Confidence 99999999999999999999999987766 5899999999999999997666655443332
Q ss_pred eccceeEEEEcCCCCEEEEEECCCeEEEEECCCc--ceeEEEccC-CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccC
Q 001295 565 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV--QLLTSIDAD-GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 641 (1106)
Q Consensus 565 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 641 (1106)
..++|+|.|-++|++...+.|++||++.- .+..++... ......+.+.|+|||++++.++..+.+++.|.-+
T Consensus 144 -----pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~ 218 (311)
T KOG1446|consen 144 -----PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD 218 (311)
T ss_pred -----cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC
Confidence 23566777778888888889999999863 344444333 3345678999999999999999999999999877
Q ss_pred CchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeE
Q 001295 642 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 721 (1106)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw 721 (1106)
| .....+..
T Consensus 219 G-~~~~tfs~---------------------------------------------------------------------- 227 (311)
T KOG1446|consen 219 G-TVKSTFSG---------------------------------------------------------------------- 227 (311)
T ss_pred C-cEeeeEee----------------------------------------------------------------------
Confidence 6 22111111
Q ss_pred ecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccc
Q 001295 722 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 801 (1106)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 801 (1106)
-+++
T Consensus 228 ------------------------------~~~~---------------------------------------------- 231 (311)
T KOG1446|consen 228 ------------------------------YPNA---------------------------------------------- 231 (311)
T ss_pred ------------------------------ccCC----------------------------------------------
Confidence 0110
Q ss_pred cccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecC-CCCCeeEEEEecCCCceEEEeeCCCcEEEE
Q 001295 802 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIY 879 (1106)
Q Consensus 802 ~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~-~~~~v~~l~~s~~d~~~la~g~~dg~v~iw 879 (1106)
..--...+|+||++++++|+ ||+|.+|+++++..+..+.+ +.+++.++.|+| .-.++|++ +..+-+|
T Consensus 232 --------~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP-~~~mf~sa--~s~l~fw 300 (311)
T KOG1446|consen 232 --------GNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNP-RYAMFVSA--SSNLVFW 300 (311)
T ss_pred --------CCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCC-ceeeeeec--CceEEEE
Confidence 11114578899999999999 79999999999999999988 688999999999 55555554 5668888
Q ss_pred Eee
Q 001295 880 NVR 882 (1106)
Q Consensus 880 d~~ 882 (1106)
=..
T Consensus 301 ~p~ 303 (311)
T KOG1446|consen 301 LPD 303 (311)
T ss_pred ecc
Confidence 654
No 84
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.9e-27 Score=257.17 Aligned_cols=273 Identities=15% Similarity=0.248 Sum_probs=212.4
Q ss_pred ccccceEEEEEcCCCceEEEeecCceEEEeecccccc---------------CCCCc--------------ccc------
Q 001295 741 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTER---------------NSSGK--------------ATA------ 785 (1106)
Q Consensus 741 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~---------------~~~~~--------------~~~------ 785 (1106)
+|.+.|.++.|++||++||++|.|+.|+||.+..... ...+. ...
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 5999999999999999999999999999999876110 00000 000
Q ss_pred ccCccccCCCCCCc---cccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEec
Q 001295 786 SVAPQLWQPPSGIM---MTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP 861 (1106)
Q Consensus 786 ~~~~~~w~~~~~~~---~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~ 861 (1106)
... .+.+.....+ ....+. +|...|..+.||.++ +|++++ |.+|++|++....|+..|. |..-||||+|+|
T Consensus 345 s~~-~~~p~~~f~f~ekP~~ef~--GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnP 419 (712)
T KOG0283|consen 345 SPC-VLLPLKAFVFSEKPFCEFK--GHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNP 419 (712)
T ss_pred Ccc-ccCCCccccccccchhhhh--ccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecc
Confidence 001 1111111111 111234 499999999999775 677777 9999999999999999998 999999999999
Q ss_pred CCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCC
Q 001295 862 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT 941 (1106)
Q Consensus 862 ~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 941 (1106)
.|.+|+++|+-||.||||++...+++.-..-+ .-|++++|+|||+..+.|+.+|.+++|+....+......+....+..
T Consensus 420 vDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 420 VDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred cCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 99999999999999999999987765544434 78999999999999999999999999999987766555555555444
Q ss_pred CCCCCCceEEEcCCC--cEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCc
Q 001295 942 PTAQSDTRVQFHQDQ--IHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1019 (1106)
Q Consensus 942 ~~~~~i~~~~~s~dg--~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~ 1019 (1106)
.....|+.+.|.|.. +.|+++.|..|+|||.++...+..+..-.....-....|+.||++|+++++|..|+||+++..
T Consensus 499 ~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 499 KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 444579999998754 478889999999999988888877763222344567789999999999999999999998543
No 85
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=2.4e-26 Score=258.02 Aligned_cols=244 Identities=19% Similarity=0.341 Sum_probs=213.7
Q ss_pred cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEE
Q 001295 348 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 427 (1106)
Q Consensus 348 ~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 427 (1106)
.|...+.|..|. ++ .+++|+.|.+|++||..++..+.. .+.||.+.|++++|..-+.+|
T Consensus 206 ~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~l 264 (537)
T KOG0274|consen 206 TDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKL 264 (537)
T ss_pred cCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEE
Confidence 367889999999 44 389999999999999999888763 378999999999998888999
Q ss_pred EEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEE
Q 001295 428 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 507 (1106)
Q Consensus 428 as~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 507 (1106)
++|+.|.+++|||..+|++.. ++.+|...|.++...+. ++++|+.|.+|++|++.++.++..+.+|.++|.++
T Consensus 265 vsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 265 VSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred EEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence 999999999999999999887 78899999999998543 68999999999999999999999999999999999
Q ss_pred eccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECC
Q 001295 508 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 587 (1106)
Q Consensus 508 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 587 (1106)
..+ +.++++|+.|++|++||+.+.+.+..+.+|...|.++.+.... .+++|+.|
T Consensus 338 ~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~----------------------~~~Sgs~D 391 (537)
T KOG0274|consen 338 QLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSEN----------------------RLLSGSLD 391 (537)
T ss_pred Eec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcc----------------------eEEeeeec
Confidence 864 3689999999999999999999999999999999998776542 59999999
Q ss_pred CeEEEEECCCc-ceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhc
Q 001295 588 FSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 650 (1106)
Q Consensus 588 ~~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 650 (1106)
+.|++||+.+. +++.++.+|.. .+..+ ...+++|++++.|++|++||..++ .+.+.+.
T Consensus 392 ~~IkvWdl~~~~~c~~tl~~h~~--~v~~l--~~~~~~Lvs~~aD~~Ik~WD~~~~-~~~~~~~ 450 (537)
T KOG0274|consen 392 TTIKVWDLRTKRKCIHTLQGHTS--LVSSL--LLRDNFLVSSSADGTIKLWDAEEG-ECLRTLE 450 (537)
T ss_pred cceEeecCCchhhhhhhhcCCcc--ccccc--ccccceeEeccccccEEEeecccC-ceeeeec
Confidence 99999999999 89999987754 44333 346789999999999999999888 5555443
No 86
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=4.1e-26 Score=214.48 Aligned_cols=247 Identities=18% Similarity=0.260 Sum_probs=208.6
Q ss_pred eccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc-CC
Q 001295 346 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DG 424 (1106)
Q Consensus 346 ~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg 424 (1106)
+.+|...|..|+|+-+|.+ ||+|+.|+++.||+++....... ....+|.+.|-.++|+| ..
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~-lasgs~dktv~v~n~e~~r~~~~-----------------~~~~gh~~svdql~w~~~~~ 77 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTK-LASGSFDKTVSVWNLERDRFRKE-----------------LVYRGHTDSVDQLCWDPKHP 77 (313)
T ss_pred hhhhhhcceEEEEcccCce-eeecccCCceEEEEecchhhhhh-----------------hcccCCCcchhhheeCCCCC
Confidence 3458899999999999997 99999999999999987744322 13689999999999999 77
Q ss_pred CEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCe
Q 001295 425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 504 (1106)
Q Consensus 425 ~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 504 (1106)
..|++++.|.+|++||+..+++...+. ..+.=..+.|+|+|. +++.++.|..|...|.++.+.....+ ..-.+
T Consensus 78 d~~atas~dk~ir~wd~r~~k~~~~i~----~~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ 150 (313)
T KOG1407|consen 78 DLFATASGDKTIRIWDIRSGKCTARIE----TKGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEV 150 (313)
T ss_pred cceEEecCCceEEEEEeccCcEEEEee----ccCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-cccee
Confidence 899999999999999999999876432 233446689999999 89999999999999999888776655 44567
Q ss_pred EEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEE
Q 001295 505 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 584 (1106)
Q Consensus 505 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 584 (1106)
.-++|+.+. ++++.....|+|.|-.+...+++..+..|.....++.|+|+|+ +|++|
T Consensus 151 ne~~w~~~n--d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gr---------------------yfA~G 207 (313)
T KOG1407|consen 151 NEISWNNSN--DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGR---------------------YFATG 207 (313)
T ss_pred eeeeecCCC--CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCc---------------------eEeec
Confidence 778887443 5777777789999999998888888888887777777776666 89999
Q ss_pred ECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 585 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 585 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
+.|..+.+||+..--+++.+....- +|+.++|+-||++||+|+.|..|-|=++.+|
T Consensus 208 sADAlvSLWD~~ELiC~R~isRldw--pVRTlSFS~dg~~lASaSEDh~IDIA~vetG 263 (313)
T KOG1407|consen 208 SADALVSLWDVDELICERCISRLDW--PVRTLSFSHDGRMLASASEDHFIDIAEVETG 263 (313)
T ss_pred cccceeeccChhHhhhheeeccccC--ceEEEEeccCcceeeccCccceEEeEecccC
Confidence 9999999999999888888876654 7999999999999999999999998888877
No 87
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.9e-27 Score=219.68 Aligned_cols=253 Identities=13% Similarity=0.256 Sum_probs=211.5
Q ss_pred ceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEc
Q 001295 342 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 421 (1106)
Q Consensus 342 ~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 421 (1106)
...+.+.-.+.+..++||++....+++++.||+++|||...... +-..++.|...|.++.|+
T Consensus 52 ~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------Pi~~~kEH~~EV~Svdwn 113 (311)
T KOG0277|consen 52 QECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------PIHKFKEHKREVYSVDWN 113 (311)
T ss_pred EEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------chhHHHhhhhheEEeccc
Confidence 34445557899999999999988899999999999999543221 112478999999999999
Q ss_pred c-CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEecc
Q 001295 422 P-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 500 (1106)
Q Consensus 422 p-dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 500 (1106)
+ +++.++++|-|++|++|+...+..++ ++.||...|...+|+|.... ++++++.|+++++||++.......+..|
T Consensus 114 ~~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~i~ah 189 (311)
T KOG0277|consen 114 TVRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMSIEAH 189 (311)
T ss_pred cccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeEEEec
Confidence 9 67778888999999999998876555 79999999999999998877 8999999999999999865545559999
Q ss_pred CCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCC-ceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCC
Q 001295 501 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 579 (1106)
Q Consensus 501 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~ 579 (1106)
...+.++.|+.. +..+++||+.|+.|++||++..+ ++..+.+|+-.|..+.|||... .
T Consensus 190 ~~Eil~cdw~ky-~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~--------------------~ 248 (311)
T KOG0277|consen 190 NSEILCCDWSKY-NHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHA--------------------S 248 (311)
T ss_pred cceeEeeccccc-CCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchh--------------------h
Confidence 999999999754 44799999999999999999865 4557888888899999988765 3
Q ss_pred EEEEEECCCeEEEEECCCc-ceeEEEccCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEc
Q 001295 580 RFLAAGDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILAT 639 (1106)
Q Consensus 580 ~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~ 639 (1106)
.|++++.|-+++|||...+ ..+.+...| ...+..+.|++ ++.++|+.+.|+.++||+.
T Consensus 249 lLaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 249 LLASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred HhhhccccceEEecccccchhhhhhhhcc--ceEEeccccccccCceeeecccccceeeecc
Confidence 5889999999999998743 455566655 44688899998 7889999999999999974
No 88
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=6.8e-26 Score=254.40 Aligned_cols=287 Identities=18% Similarity=0.266 Sum_probs=239.7
Q ss_pred CCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCC
Q 001295 410 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 489 (1106)
Q Consensus 410 ~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~ 489 (1106)
.|...+.+..|. +.++++++.|++|++||..++..+.. .+.||.+.|.+++|..-+. ++++|+.|.+++|||..
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~ 279 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCS 279 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecC
Confidence 466788899998 66899999999999999999876652 3889999999999987455 79999999999999999
Q ss_pred CCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccce
Q 001295 490 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 569 (1106)
Q Consensus 490 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i 569 (1106)
+|++..++.+|...|.++...+ ..+++|+.|.+|++|++.++..+..+.+|...|.++...
T Consensus 280 sg~C~~~l~gh~stv~~~~~~~----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--------------- 340 (537)
T KOG0274|consen 280 TGECTHSLQGHTSSVRCLTIDP----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--------------- 340 (537)
T ss_pred CCcEEEEecCCCceEEEEEccC----ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---------------
Confidence 9999999999999999997432 578899999999999999988888888888888887765
Q ss_pred eEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhh
Q 001295 570 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649 (1106)
Q Consensus 570 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 649 (1106)
+.++++|+.|++|++||+.+++++..+.+| ...|.++.+... .++++|+.|++|++||+.+..+++..+
T Consensus 341 --------~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH--~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 341 --------EPLLVSGSYDGTVKVWDPRTGKCLKSLSGH--TGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL 409 (537)
T ss_pred --------CCEEEEEecCceEEEEEhhhceeeeeecCC--cceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh
Confidence 236999999999999999999999999987 558999988665 899999999999999998874444444
Q ss_pred cccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCC
Q 001295 650 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 729 (1106)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~ 729 (1106)
.+|.
T Consensus 410 ~~h~---------------------------------------------------------------------------- 413 (537)
T KOG0274|consen 410 QGHT---------------------------------------------------------------------------- 413 (537)
T ss_pred cCCc----------------------------------------------------------------------------
Confidence 3322
Q ss_pred ccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCC
Q 001295 730 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP 809 (1106)
Q Consensus 730 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 809 (1106)
T Consensus 414 -------------------------------------------------------------------------------- 413 (537)
T KOG0274|consen 414 -------------------------------------------------------------------------------- 413 (537)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecC-CCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEE
Q 001295 810 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 887 (1106)
Q Consensus 810 ~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~-~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~ 887 (1106)
.-+..+. ..+++|++++ |++|++||..++++++++.+ |...|.++++. ...+++++.||++++||+.+++++
T Consensus 414 -~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 414 -SLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred -ccccccc--cccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC---cceEEEEecCCeeEEEecccCchh
Confidence 1121111 2456788887 99999999999999999998 67888888886 347888999999999999999988
Q ss_pred EEecCcc
Q 001295 888 SKLKGHS 894 (1106)
Q Consensus 888 ~~l~~h~ 894 (1106)
+.+-.+.
T Consensus 488 ~~l~~~~ 494 (537)
T KOG0274|consen 488 RTLLSTD 494 (537)
T ss_pred hhhhhcc
Confidence 8774443
No 89
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=9.7e-26 Score=217.58 Aligned_cols=306 Identities=16% Similarity=0.230 Sum_probs=225.7
Q ss_pred EccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccc
Q 001295 604 IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGL 683 (1106)
Q Consensus 604 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1106)
+++| ...|++++|+.||++|++.+.|++|++|++++-. .+.|....
T Consensus 82 LKgH--~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~-----~~eHr~~R--------------------------- 127 (420)
T KOG2096|consen 82 LKGH--KKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFE-----NKEHRCIR--------------------------- 127 (420)
T ss_pred hhcc--CCceeeeEEcCCCceeEEEeCCceEEEEecchhh-----hhhhhHhh---------------------------
Confidence 4445 5589999999999999999999999999987631 11111100
Q ss_pred ccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeec
Q 001295 684 ADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS 763 (1106)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 763 (1106)
... .-+..+.++|+||.+.+++...
T Consensus 128 ---------------------------------------------------~nv----e~dhpT~V~FapDc~s~vv~~~ 152 (420)
T KOG2096|consen 128 ---------------------------------------------------QNV----EYDHPTRVVFAPDCKSVVVSVK 152 (420)
T ss_pred ---------------------------------------------------ccc----cCCCceEEEECCCcceEEEEEc
Confidence 000 1234578899999887776665
Q ss_pred -CceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCC
Q 001295 764 -NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF 841 (1106)
Q Consensus 764 -dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~ 841 (1106)
...+++|.+...+- |...- ...-||-. . +. ..|.-.+..+-...++++|++++ |.+|.+|++. |
T Consensus 153 ~g~~l~vyk~~K~~d---G~~~~--~~v~~D~~--~-----f~-~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-G 218 (420)
T KOG2096|consen 153 RGNKLCVYKLVKKTD---GSGSH--HFVHIDNL--E-----FE-RKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-G 218 (420)
T ss_pred cCCEEEEEEeeeccc---CCCCc--cccccccc--c-----cc-hhcccceEEEeecCCceEEEEecCCCcEEEEecC-C
Confidence 47899987754221 11100 00112210 0 00 12667778888888999999999 8899999999 8
Q ss_pred ceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec---c-----eEEEEecCcccCeeEEEEecCCCEEEEEc
Q 001295 842 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---D-----EVKSKLKGHSKRITGLAFSHALNVLVSSG 913 (1106)
Q Consensus 842 ~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~---~-----~~~~~l~~h~~~V~~l~~s~d~~~l~s~s 913 (1106)
+.+..+......-+..+.|| +|++||+++----|++|.+-- | ..+..|+||...|+.++||++...+++++
T Consensus 219 q~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS 297 (420)
T KOG2096|consen 219 QLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS 297 (420)
T ss_pred ceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe
Confidence 88988887777788899999 999999999888999998742 2 24467899999999999999999999999
Q ss_pred CCCcEEEEeCCCcccc--cceeecccCC-CCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCe
Q 001295 914 ADSQLCVWSSDGWEKQ--KNRFLQIPTG-RTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPI 990 (1106)
Q Consensus 914 ~Dg~i~vwd~~~~~~~--~~~~~~~~~~-~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v 990 (1106)
.||+++|||++-.-.. ....+..... ..........+.++|.|+.||++....+.+|..++++....+. ..|...|
T Consensus 298 kDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e-~~h~~~I 376 (420)
T KOG2096|consen 298 KDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELE-DIHSTTI 376 (420)
T ss_pred cCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHH-HhhcCce
Confidence 9999999997632111 1111221110 0011134468999999999999999999999999988776665 4789999
Q ss_pred eEEEECCCCCEEEEEEcCCeEEEEE
Q 001295 991 THATFSCDSQLVYACFLDATVCVFS 1015 (1106)
Q Consensus 991 ~~l~~s~d~~~l~t~s~Dg~i~vwd 1015 (1106)
++|+|++||+++++++ |..++++.
T Consensus 377 s~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 377 SSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred eeEEecCCCcEEeeec-ceeeeeec
Confidence 9999999999999986 88899876
No 90
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.7e-27 Score=248.01 Aligned_cols=253 Identities=19% Similarity=0.258 Sum_probs=208.0
Q ss_pred CCCCcE---EEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCC
Q 001295 349 QGSSPM---SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 425 (1106)
Q Consensus 349 h~~~v~---~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 425 (1106)
|...|. ++..+..+...|.||+.||.|++|++........ .+. ...+..|.+.|..++...+|+
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s------------~~~-~asme~HsDWVNDiiL~~~~~ 86 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS------------TPY-IASMEHHSDWVNDIILCGNGK 86 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc------------cch-hhhhhhhHhHHhhHHhhcCCC
Confidence 444555 5555544433599999999999999875433211 111 124789999999999999999
Q ss_pred EEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEE-cCCCCceEEEEecCCCcEEEEeCCCC--ceeE-------
Q 001295 426 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF-SHPNKQLCVITCGDDKTIKVWDATNG--AKQY------- 495 (1106)
Q Consensus 426 ~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~-s~d~~~~~l~s~~~d~~i~iwd~~~~--~~~~------- 495 (1106)
.|+++|.|-+|++|+...+. -.+..++..|.+.|.|+++ .++.. ++||||.|+.|.+||+.++ +.+.
T Consensus 87 tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 87 TLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred ceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 99999999999999998764 2233468889999999999 66666 8999999999999999987 2332
Q ss_pred -EEe-ccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEE
Q 001295 496 -IFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 573 (1106)
Q Consensus 496 -~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 573 (1106)
.+. |+...|.+++. +++|..|++|+..+.+++||.++...+..+.+|...|..+..+.||+
T Consensus 164 ~sl~sG~k~siYSLA~--N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt--------------- 226 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAM--NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT--------------- 226 (735)
T ss_pred ccCCCCCccceeeeec--CCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCC---------------
Confidence 233 78889999996 45557999999999999999999999999999998888887777776
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 574 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 574 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
.+++++.||+|++||+...+++.++..|.. .|+++..+|+-..+++|+.||.|..-|+++.
T Consensus 227 ------~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 227 ------RLLSASSDGTIRLWDLGQQRCLATYIVHKE--GVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ------eEeecCCCceEEeeeccccceeeeEEeccC--ceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 799999999999999999999999988755 6999999999999999999999999888775
No 91
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=1e-26 Score=223.22 Aligned_cols=245 Identities=13% Similarity=0.223 Sum_probs=201.6
Q ss_pred cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295 742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 821 (1106)
Q Consensus 742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 821 (1106)
|...|..+.|.|....|++++.|+++++||+........ . ..+ ....+|.++.|.|.
T Consensus 171 H~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA------------------~--K~~---qd~~~vrsiSfHPs 227 (430)
T KOG0640|consen 171 HVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRA------------------F--KVF---QDTEPVRSISFHPS 227 (430)
T ss_pred ccCcccceeecchhheEEeccCCCeEEEEecccHHHHHH------------------H--HHh---hccceeeeEeecCC
Confidence 889999999999999999999999999999874321100 0 001 14678999999999
Q ss_pred CCEEEEEeC-CeEEEEEcCCCceeeee---cCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEec-Ccc-c
Q 001295 822 DSYVMSASG-GKISLFNMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-GHS-K 895 (1106)
Q Consensus 822 ~~~l~~~sd-g~i~vwd~~~~~~~~~~---~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~-~h~-~ 895 (1106)
|.+|++|.| .++++||+.+.++...- .+|.+.|+++.+|+ .+++.++|+.||.|+|||--+++|+.++. +|. .
T Consensus 228 GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gs 306 (430)
T KOG0640|consen 228 GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGS 306 (430)
T ss_pred CceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCc
Confidence 999999995 78999999998886553 46888999999999 99999999999999999999999998884 464 5
Q ss_pred CeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCC--CCCCCCCceEEEcCCCcEEEEE--eCCeEEEEe
Q 001295 896 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR--TPTAQSDTRVQFHQDQIHFLVV--HETQLAIFE 971 (1106)
Q Consensus 896 ~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~dg~~l~~~--~d~~v~i~d 971 (1106)
.|.+..|+.+|+++.|.|.|..+++|++.+++... ...|. .....--+...|+....|++.- ..+.++-||
T Consensus 307 evcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~-----~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWd 381 (430)
T KOG0640|consen 307 EVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLK-----EYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWD 381 (430)
T ss_pred eeeeEEEccCCeEEeecCCcceeeeeeecCCceEE-----EEecCCcccchhhhhhhhhcCccceEEccccccCceeecc
Confidence 68999999999999999999999999999976533 22222 1101122556788778887773 456899999
Q ss_pred cCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEc
Q 001295 972 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1016 (1106)
Q Consensus 972 ~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~ 1016 (1106)
.+++..+..+.. +|.+.+..+.-||.+.-+++++.|..+|+|--
T Consensus 382 aRtadr~~l~sl-gHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 382 ARTADRVALLSL-GHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred ccchhhhhhccc-CCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 999998888775 89999999999999999999999999999963
No 92
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=1.8e-26 Score=236.62 Aligned_cols=219 Identities=21% Similarity=0.299 Sum_probs=164.3
Q ss_pred cCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCce----eeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcE
Q 001295 408 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 483 (1106)
Q Consensus 408 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~----~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i 483 (1106)
+.+|+..|.++++.|.|.+|++|+.|.+|++||+..-.. .+++.. .....|.++.|++.|..+++++| ...+
T Consensus 163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P--~E~h~i~sl~ys~Tg~~iLvvsg--~aqa 238 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP--CETHQINSLQYSVTGDQILVVSG--SAQA 238 (641)
T ss_pred ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCc--ccccccceeeecCCCCeEEEEec--Ccce
Confidence 689999999999999999999999999999999985432 222222 23457999999999996444444 5688
Q ss_pred EEEeCCCCceeEEE-------------eccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeE-eeCCCCeeE
Q 001295 484 KVWDATNGAKQYIF-------------EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD-YEAPGRWCT 549 (1106)
Q Consensus 484 ~iwd~~~~~~~~~~-------------~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~ 549 (1106)
+|+| +.|..+..+ +||...++|.+|+|... ..+++++.||++|+||+........ +....
T Consensus 239 kl~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k-~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~---- 312 (641)
T KOG0772|consen 239 KLLD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNK-EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP---- 312 (641)
T ss_pred eEEc-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcc-cceEEecCCCcEEEEecCCchhheeEEeecc----
Confidence 9999 666554433 58999999999998765 6899999999999999987554332 21110
Q ss_pred EEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcce---eEEEccCCCCCCcCeEEEccCCCEEE
Q 001295 550 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL---LTSIDADGGLPASPRIRFNKDGCLLA 626 (1106)
Q Consensus 550 ~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~v~~v~~s~~~~~l~ 626 (1106)
.+...-.++.++|+++++++++|+.||.|.+|+...... ...-..|.....|+|+.||+||++|+
T Consensus 313 ------------~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~Ll 380 (641)
T KOG0772|consen 313 ------------AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLL 380 (641)
T ss_pred ------------CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhh
Confidence 011122566777888888999999999999999754322 22223444444899999999999999
Q ss_pred EEeCCCcEEEEEccCCchhhhh
Q 001295 627 VSTNDNGIKILATSDGIRLLRT 648 (1106)
Q Consensus 627 ~~~~dg~i~iwd~~~~~~~~~~ 648 (1106)
+-+.|+++++||++...+++..
T Consensus 381 SRg~D~tLKvWDLrq~kkpL~~ 402 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQFKKPLNV 402 (641)
T ss_pred hccCCCceeeeeccccccchhh
Confidence 9999999999999877555443
No 93
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=1.7e-27 Score=238.12 Aligned_cols=286 Identities=19% Similarity=0.318 Sum_probs=234.1
Q ss_pred ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295 407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 486 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 486 (1106)
.+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....+|.|-.++|+.+.|.++++ .+++.+.|+.+++|
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLW 246 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeee
Confidence 367899999999999999999999999999999998776 334457888899999999999999 79999999999999
Q ss_pred eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeec
Q 001295 487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 566 (1106)
Q Consensus 487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 566 (1106)
++...+...+|.||++.|+++.|.-.. ..+++|+.|.+|+.||+....+..++.. ...+..+..+
T Consensus 247 nvd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~------------ 311 (459)
T KOG0288|consen 247 NVDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS------------ 311 (459)
T ss_pred eccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheeccccc-cccccceEec------------
Confidence 999999999999999999999986554 3499999999999999998655443321 1222222222
Q ss_pred cceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhh
Q 001295 567 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 646 (1106)
Q Consensus 567 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 646 (1106)
...+++|-.|+.|++||+++..+......++ .|+++..+++|..+.+.+.|.++.+.|+++. ...
T Consensus 312 -----------~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg---~vtSl~ls~~g~~lLsssRDdtl~viDlRt~-eI~ 376 (459)
T KOG0288|consen 312 -----------ISDVISGHFDKKVRFWDIRSADKTRSVPLGG---RVTSLDLSMDGLELLSSSRDDTLKVIDLRTK-EIR 376 (459)
T ss_pred -----------ceeeeecccccceEEEeccCCceeeEeecCc---ceeeEeeccCCeEEeeecCCCceeeeecccc-cEE
Confidence 1247788899999999999999999988765 5999999999999999999999999998765 111
Q ss_pred hhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCC
Q 001295 647 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 726 (1106)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 726 (1106)
.
T Consensus 377 ~------------------------------------------------------------------------------- 377 (459)
T KOG0288|consen 377 Q------------------------------------------------------------------------------- 377 (459)
T ss_pred E-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCC
Q 001295 727 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 806 (1106)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 806 (1106)
.|+..+.
T Consensus 378 -----------------------~~sA~g~-------------------------------------------------- 384 (459)
T KOG0288|consen 378 -----------------------TFSAEGF-------------------------------------------------- 384 (459)
T ss_pred -----------------------Eeecccc--------------------------------------------------
Confidence 1111110
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCC--CeeEEEEecCCCceEEEeeCCCcEEEE
Q 001295 807 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDSSIQIY 879 (1106)
Q Consensus 807 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~--~v~~l~~s~~d~~~la~g~~dg~v~iw 879 (1106)
......+.+.|||++.|+++|+ ||.|+||++.++++...+..... .|++++|+| .|..|++++.++.+.+|
T Consensus 385 -k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 385 -KCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP-SGSGLLSADKQKAVTLW 458 (459)
T ss_pred -ccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC-CCchhhcccCCcceEec
Confidence 0123367889999999999999 99999999999999888765544 599999999 89999999999999999
No 94
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.6e-25 Score=215.52 Aligned_cols=254 Identities=15% Similarity=0.254 Sum_probs=210.4
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeC--CCcEEEEEeecce
Q 001295 809 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVDE 885 (1106)
Q Consensus 809 ~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~--dg~v~iwd~~~~~ 885 (1106)
....|.++.|+++|.++++++ |.+|++||..+++.++++..+.-.+..++|.. ....+..++. |.+|+.-++.+.+
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIryLsl~dNk 91 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIRYLSLHDNK 91 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceEEEEeecCc
Confidence 477899999999999999988 78999999999999999998888899999988 4555555655 8899999999999
Q ss_pred EEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeC-
Q 001295 886 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE- 964 (1106)
Q Consensus 886 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d- 964 (1106)
.++.|.||...|++|+.+|-+..++|++.|++|++||++..++... +... .-..++|.|+|-++|++.+
T Consensus 92 ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~--l~~~--------~~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 92 YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL--LNLS--------GRPIAAFDPEGLIFALANGS 161 (311)
T ss_pred eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE--EecC--------CCcceeECCCCcEEEEecCC
Confidence 9999999999999999999999999999999999999997554332 2111 2357899999999999644
Q ss_pred CeEEEEecCCc--eEeeecccC-CCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCcc
Q 001295 965 TQLAIFETTKL--ECVKQWVPR-ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1041 (1106)
Q Consensus 965 ~~v~i~d~~~~--~~~~~~~~~-~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1041 (1106)
+.|++||++.- .....+... +-...++.|.|||||++|+.+...+.+++.|.-+|..+..+. ++....-.
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs-------~~~~~~~~ 234 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS-------GYPNAGNL 234 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe-------eccCCCCc
Confidence 49999999874 233333332 346789999999999999999999999999999999888877 22233345
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEeecCCCCccCCCCC
Q 001295 1042 PLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPP 1081 (1106)
Q Consensus 1042 ~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~~~~~~~~~ 1081 (1106)
++..+|+| |++++++|+.||+|.+|+++++........|
T Consensus 235 ~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 235 PLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred ceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCC
Confidence 57899999 7999999999999999999999944443333
No 95
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=2.1e-25 Score=250.89 Aligned_cols=264 Identities=16% Similarity=0.208 Sum_probs=201.2
Q ss_pred cceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEec-CC
Q 001295 744 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-ND 822 (1106)
Q Consensus 744 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~ 822 (1106)
..|....+++++..++++..+.....|+...+. ..++....|+.......-.+|...|.+++|+| ++
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~------------~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~ 88 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGST------------AVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDP 88 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCce------------EEeeccccccCCCCCceEeCCCCCEEEEEEcCCCC
Confidence 445556677787778888888888888754321 12333334443321111124999999999999 88
Q ss_pred CEEEEEe-CCeEEEEEcCCC-------ceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcc
Q 001295 823 SYVMSAS-GGKISLFNMMTF-------KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS 894 (1106)
Q Consensus 823 ~~l~~~s-dg~i~vwd~~~~-------~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~ 894 (1106)
++|++++ |++|++||+.++ ..+..+.+|...|.+++|+|.++.+|++|+.|+.|+|||+.+++.+..+.+|.
T Consensus 89 ~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~ 168 (493)
T PTZ00421 89 QKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHS 168 (493)
T ss_pred CEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCC
Confidence 9999999 899999999764 34667889999999999999445799999999999999999999999999999
Q ss_pred cCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-E----eCCeEEE
Q 001295 895 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V----HETQLAI 969 (1106)
Q Consensus 895 ~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~----~d~~v~i 969 (1106)
..|++++|+|+|.+|++++.|++|++||+.+++. +....+|.. .....+.|.+++..+++ + .|+.|++
T Consensus 169 ~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~-----v~tl~~H~~--~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vkl 241 (493)
T PTZ00421 169 DQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI-----VSSVEAHAS--AKSQRCLWAKRKDLIITLGCSKSQQRQIML 241 (493)
T ss_pred CceEEEEEECCCCEEEEecCCCEEEEEECCCCcE-----EEEEecCCC--CcceEEEEcCCCCeEEEEecCCCCCCeEEE
Confidence 9999999999999999999999999999998653 222334432 12356788998877776 3 3689999
Q ss_pred EecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCceeEEeeC
Q 001295 970 FETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus 970 ~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s-~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
||+++...........+...+....|++|+.+|++++ .|+.|++||+.+++.+....
T Consensus 242 WDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~ 299 (493)
T PTZ00421 242 WDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS 299 (493)
T ss_pred EeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee
Confidence 9998765322221112345667778999999998887 59999999999998876654
No 96
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=6.5e-26 Score=255.43 Aligned_cols=309 Identities=19% Similarity=0.264 Sum_probs=229.7
Q ss_pred CCCCcEEEEEecCCCeEEEEEe--ccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCE
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 426 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 426 (1106)
++..|..++.+|||.. +|||+ .||.++||+.+.--. ....++.. .+.....+..|.+.|.|+.|||||+|
T Consensus 12 ~~~~IfSIdv~pdg~~-~aTgGq~~d~~~~iW~~~~vl~----~~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVK-FATGGQVLDGGIVIWSQDPVLD----EKEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCcee-EecCCccccccceeeccccccc----hhhhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 4567999999999995 99999 899999999753110 00111111 23333457899999999999999999
Q ss_pred EEEEeCCCeEEEEEccC----------C-----ceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC
Q 001295 427 FGVAYSRHIVQIYSYHG----------G-----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 491 (1106)
Q Consensus 427 las~~~d~~v~iwd~~~----------~-----~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 491 (1106)
||+|++|+.|.||.... | +..+....+.+|...|..++|+|++. ++++++.|++|.|||..+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999872 0 11235567899999999999999999 8999999999999999999
Q ss_pred ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeE
Q 001295 492 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 571 (1106)
Q Consensus 492 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~ 571 (1106)
+.+.++.+|.+.|..+.|.| -|++|++-+.|++|++|++.+.+....+..+-..+ +-. ..+..
T Consensus 162 ~~~~vl~~H~s~VKGvs~DP--~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~------~~~---------T~f~R 224 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWDP--IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEES------PLT---------TFFLR 224 (942)
T ss_pred eeeeeeecccccccceEECC--ccCeeeeecCCceEEEEEcccceeeEeeccchhhC------CCc---------ceeee
Confidence 99999999999999999855 55899999999999999977655544444332210 001 13344
Q ss_pred EEEcCCCCEEEEE----ECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccC-----CC------------EEEEEeC
Q 001295 572 VQFDTTKNRFLAA----GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD-----GC------------LLAVSTN 630 (1106)
Q Consensus 572 ~~~~~~~~~l~~~----~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-----~~------------~l~~~~~ 630 (1106)
+.|+|||.+|++. +.-..+.|.+-.+.+.-..+-+|. .++.++.|+|. .+ .+|+|+.
T Consensus 225 lSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~--~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq 302 (942)
T KOG0973|consen 225 LSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHS--APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ 302 (942)
T ss_pred cccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCC--CceEEEEeChHHhccccccCCccCCCcceEEEEEecC
Confidence 5566666677763 234578888887777777777664 48999999982 11 4566666
Q ss_pred CCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccc
Q 001295 631 DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRI 710 (1106)
Q Consensus 631 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 710 (1106)
|++|.||..... +++..
T Consensus 303 DrSlSVW~T~~~-RPl~v-------------------------------------------------------------- 319 (942)
T KOG0973|consen 303 DRSLSVWNTALP-RPLFV-------------------------------------------------------------- 319 (942)
T ss_pred CccEEEEecCCC-Cchhh--------------------------------------------------------------
Confidence 777777765333 11111
Q ss_pred cccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccc
Q 001295 711 TEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTE 776 (1106)
Q Consensus 711 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 776 (1106)
+. ......|.+++|+|||..|++++.||+|.+..++..+
T Consensus 320 ---------------------i~------~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 320 ---------------------IH------NLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred ---------------------hh------hhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 11 1245689999999999999999999999999987653
No 97
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=1.4e-25 Score=229.00 Aligned_cols=255 Identities=15% Similarity=0.224 Sum_probs=200.3
Q ss_pred ceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEc
Q 001295 342 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 421 (1106)
Q Consensus 342 ~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 421 (1106)
+...++.|+.-|.++++|...++ +.||+. |.|+|||+...... .+....-.....+.|..+.++
T Consensus 411 rq~~tL~HGEvVcAvtIS~~trh-VyTgGk-gcVKVWdis~pg~k--------------~PvsqLdcl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTRH-VYTGGK-GCVKVWDISQPGNK--------------SPVSQLDCLNRDNYIRSCKLL 474 (705)
T ss_pred HhhhhhccCcEEEEEEecCCcce-eEecCC-CeEEEeeccCCCCC--------------CccccccccCcccceeeeEec
Confidence 45667889999999999999997 888885 89999999754221 111111123346689999999
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccC
Q 001295 422 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 501 (1106)
Q Consensus 422 pdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 501 (1106)
|||+.|++|+.-.++.|||+..... +....+..-.-..++++.+||.+ +.+++..||.|.|||+.+...++.|+||.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCC
Confidence 9999999999999999999987543 21123444445688899999999 88999999999999999999999999999
Q ss_pred CCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEE
Q 001295 502 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 581 (1106)
Q Consensus 502 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l 581 (1106)
+.+.||.++ .+|..|.+|+-|++||.||++++..+...... . .|.++.++|++.++
T Consensus 552 DGascIdis--~dGtklWTGGlDntvRcWDlregrqlqqhdF~-S---------------------QIfSLg~cP~~dWl 607 (705)
T KOG0639|consen 552 DGASCIDIS--KDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS-S---------------------QIFSLGYCPTGDWL 607 (705)
T ss_pred CCceeEEec--CCCceeecCCCccceeehhhhhhhhhhhhhhh-h---------------------hheecccCCCccce
Confidence 999999974 56678999999999999999987765543221 1 34445566666799
Q ss_pred EEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 582 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 582 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
+.|-+.+.+.+..... .....+..| ...|.++.|.+.|+++++.+.|+.+..|...-|
T Consensus 608 avGMens~vevlh~sk-p~kyqlhlh--eScVLSlKFa~cGkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 608 AVGMENSNVEVLHTSK-PEKYQLHLH--ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred eeecccCcEEEEecCC-ccceeeccc--ccEEEEEEecccCceeeecCchhhhhhccCccc
Confidence 9999999998887643 333344333 557999999999999999999999999977655
No 98
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2e-25 Score=214.49 Aligned_cols=246 Identities=18% Similarity=0.229 Sum_probs=194.2
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCc-ceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEE
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR-ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 427 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 427 (1106)
-.+.|.+++|||....+++.||-||+|++|+++.. .... .....|.++|.+++|+.||..+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKV 87 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceE
Confidence 56899999999976668889999999999999863 3222 1357899999999999999999
Q ss_pred EEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEE
Q 001295 428 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 507 (1106)
Q Consensus 428 as~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 507 (1106)
++|+.|+.+++||+.+++.. .+..|.++|.++.|-+...+..|+||+.|++|+.||.+...++.++. -.+.+.++
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 99999999999999998644 36789999999999887665589999999999999999999998887 45677777
Q ss_pred eccccCCceEEEEEecCCeEEEEeCCCCCceeE-eeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEEC
Q 001295 508 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD-YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 586 (1106)
Q Consensus 508 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 586 (1106)
..- . .+++.+..++.|.+|++++...... ...+.. -.+++++...+....+.|+-
T Consensus 163 Dv~--~--pm~vVata~r~i~vynL~n~~te~k~~~SpLk--------------------~Q~R~va~f~d~~~~alGsi 218 (347)
T KOG0647|consen 163 DVL--Y--PMAVVATAERHIAVYNLENPPTEFKRIESPLK--------------------WQTRCVACFQDKDGFALGSI 218 (347)
T ss_pred hcc--C--ceeEEEecCCcEEEEEcCCCcchhhhhcCccc--------------------ceeeEEEEEecCCceEeeee
Confidence 642 2 4789999999999999976543321 111111 13444555555556799999
Q ss_pred CCeEEEEECCCc--ceeEEEccCCC-------CCCcCeEEEccCCCEEEEEeCCCcEEEEEccC
Q 001295 587 DFSIKFWDMDSV--QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKILATSD 641 (1106)
Q Consensus 587 d~~i~iwd~~~~--~~~~~~~~~~~-------~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 641 (1106)
+|.+-+..++.+ +.-.+|+.|.. .-.|++++|+|.-..|++++.||++.+||-..
T Consensus 219 EGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 219 EGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA 282 (347)
T ss_pred cceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh
Confidence 999999999886 44455555542 22477899999989999999999999999644
No 99
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=5.2e-26 Score=233.34 Aligned_cols=310 Identities=21% Similarity=0.278 Sum_probs=229.8
Q ss_pred CCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccc
Q 001295 609 GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAA 688 (1106)
Q Consensus 609 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1106)
+...|.++++.|.|..|++|+.|.+|++||+.......+.++.
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~------------------------------------- 208 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQ------------------------------------- 208 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhc-------------------------------------
Confidence 3567999999999999999999999999998754322222210
Q ss_pred cccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEE
Q 001295 689 SMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL 768 (1106)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 768 (1106)
+. ......|.++.|++.|..|++.+.....+
T Consensus 209 ----------------------------------------------l~---P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 209 ----------------------------------------------LQ---PCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred ----------------------------------------------cC---cccccccceeeecCCCCeEEEEecCccee
Confidence 00 11346789999999999999999999999
Q ss_pred EeeccccccCCCCccccccCccccCCCCCCcccccc-CCCCCCCCeeEEEEecCCC-EEEEEe-CCeEEEEEcCCCcee-
Q 001295 769 LWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV-TDSNPEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKTM- 844 (1106)
Q Consensus 769 iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~v~~l~~s~~~~-~l~~~s-dg~i~vwd~~~~~~~- 844 (1106)
|+|-.... +-....|......+ ...+|...++|.+|+|+.+ .+++++ ||++||||+...+..
T Consensus 240 l~DRdG~~--------------~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~ 305 (641)
T KOG0772|consen 240 LLDRDGFE--------------IVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL 305 (641)
T ss_pred EEccCCce--------------eeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhe
Confidence 99865321 11122222211111 1124889999999999775 555666 999999999864432
Q ss_pred eeec-----CCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecce---EEEEecCccc--CeeEEEEecCCCEEEEEcC
Q 001295 845 ATFM-----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---VKSKLKGHSK--RITGLAFSHALNVLVSSGA 914 (1106)
Q Consensus 845 ~~~~-----~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~---~~~~l~~h~~--~V~~l~~s~d~~~l~s~s~ 914 (1106)
..+. +..-.++.++|++ |+++||.|+.||+|.+|+..+.. ....-++|.. .|+||.||+||++|+|-|.
T Consensus 306 qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~ 384 (641)
T KOG0772|consen 306 QVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGF 384 (641)
T ss_pred eEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccC
Confidence 2222 2344689999999 99999999999999999975432 2234467877 8999999999999999999
Q ss_pred CCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEe-------CCeEEEEecCCceEeeecccCCCC
Q 001295 915 DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH-------ETQLAIFETTKLECVKQWVPRESS 987 (1106)
Q Consensus 915 Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~-------d~~v~i~d~~~~~~~~~~~~~~h~ 987 (1106)
|+++++||++..+.. +....+-.. ...-+.++|||+.++|++|. .+.+.+||..+.+.+..+... .
T Consensus 385 D~tLKvWDLrq~kkp----L~~~tgL~t-~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~--~ 457 (641)
T KOG0772|consen 385 DDTLKVWDLRQFKKP----LNVRTGLPT-PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS--T 457 (641)
T ss_pred CCceeeeeccccccc----hhhhcCCCc-cCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC--C
Confidence 999999999986543 333332211 12458899999999999842 367999999999998887754 7
Q ss_pred CCeeEEEECCCCCEEEEEEcCCeEEEEEcC----CceeEEeeC
Q 001295 988 APITHATFSCDSQLVYACFLDATVCVFSAA----NLKLRCRIN 1026 (1106)
Q Consensus 988 ~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~----~~~~~~~~~ 1026 (1106)
..|..+.|.|.=+.|.+|+.||+++||--. .|..+|...
T Consensus 458 aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~~S~RGak~cv~k 500 (641)
T KOG0772|consen 458 ASVVRCLWHPKLNQIFAGSGDGTAHVYYDPNESIRGAKLCVVK 500 (641)
T ss_pred ceEEEEeecchhhheeeecCCCceEEEECccccccchhheeec
Confidence 789999999998889999999999998433 345555554
No 100
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.2e-26 Score=217.86 Aligned_cols=253 Identities=16% Similarity=0.315 Sum_probs=216.4
Q ss_pred cceeeecc-CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEE
Q 001295 341 KTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 419 (1106)
Q Consensus 341 ~~~~~~~~-h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 419 (1106)
.++.+.+. |++.||.++...... ++.+++.|.+.+||.+++|.++.. +.||.+.|+++.
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsik 197 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIK 197 (481)
T ss_pred EeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEE
Confidence 34444454 999999999988777 799999999999999999999985 799999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEEc------cC--------C-----------------------ceeeeeeeeccccCCeeE
Q 001295 420 WSPDGSLFGVAYSRHIVQIYSY------HG--------G-----------------------DEVRQHLEIDAHVGGVND 462 (1106)
Q Consensus 420 ~spdg~~las~~~d~~v~iwd~------~~--------~-----------------------~~~~~~~~l~~h~~~V~~ 462 (1106)
|++.+.++++++.|++..||.. .. + ..-.++..|.+|.+.|.+
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 9999999999999999999972 11 0 001235678899999999
Q ss_pred EEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCC-CceeEe
Q 001295 463 IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDY 541 (1106)
Q Consensus 463 ~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~ 541 (1106)
..|...|+ .+++++.|.+..+||+++|..+..+.||....+.++-+|.. +++++.+.|.+.++||++.. ..+..|
T Consensus 278 ~dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ--rLVvTsSrDtTFRLWDFReaI~sV~VF 353 (481)
T KOG0300|consen 278 CDWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ--RLVVTSSRDTTFRLWDFREAIQSVAVF 353 (481)
T ss_pred hhhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCcc--eEEEEeccCceeEeccchhhcceeeee
Confidence 99999999 69999999999999999999999999999999999877665 79999999999999999853 334478
Q ss_pred eCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcc-eeEEEccCCCCCCcCeEEEcc
Q 001295 542 EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNK 620 (1106)
Q Consensus 542 ~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~v~~s~ 620 (1106)
.+|...|++..|..+.+ +++|+.|.+|++||+++.+ ++.++... ..++.++.+.
T Consensus 354 QGHtdtVTS~vF~~dd~----------------------vVSgSDDrTvKvWdLrNMRsplATIRtd---S~~NRvavs~ 408 (481)
T KOG0300|consen 354 QGHTDTVTSVVFNTDDR----------------------VVSGSDDRTVKVWDLRNMRSPLATIRTD---SPANRVAVSK 408 (481)
T ss_pred cccccceeEEEEecCCc----------------------eeecCCCceEEEeeeccccCcceeeecC---CccceeEeec
Confidence 88999999999988886 9999999999999998753 56666543 3588899999
Q ss_pred CCCEEEEEeCCCcEEEEEccCC
Q 001295 621 DGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 621 ~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
.+..++.--++..|++||+...
T Consensus 409 g~~iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 409 GHPIIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred CCceEEeccCCceEEEEecCCC
Confidence 9999999999999999998654
No 101
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=5e-25 Score=247.87 Aligned_cols=263 Identities=13% Similarity=0.125 Sum_probs=197.1
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc-CCCEE
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLF 427 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 427 (1106)
|-..|....+++|+.. +++++.+.....|+...+..+.. ....+..+.....+.+|.+.|.+++|+| ++++|
T Consensus 19 ~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~~------~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 19 HFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVLK------HTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred ceeccccccccCCCCC-cEeECCceEEEEEecCCceEEee------ccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 4466778888889774 66777778888998765532211 1111111112235789999999999999 89999
Q ss_pred EEEeCCCeEEEEEccCCce----eeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCC
Q 001295 428 GVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 503 (1106)
Q Consensus 428 as~~~d~~v~iwd~~~~~~----~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 503 (1106)
|+|+.|++|+|||+.++.. ...+..+.+|...|.+++|+|++.. +|++|+.|++|+|||+.+++.+..+.+|...
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 9999999999999986532 1234468899999999999998744 7999999999999999999999999999999
Q ss_pred eEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEE
Q 001295 504 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 583 (1106)
Q Consensus 504 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 583 (1106)
|.+++|++ ++.+|++++.|+.|++||++++.....+..|.... ...+.|.+++..+++
T Consensus 171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~--------------------~~~~~w~~~~~~ivt 228 (493)
T PTZ00421 171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAK--------------------SQRCLWAKRKDLIIT 228 (493)
T ss_pred eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCc--------------------ceEEEEcCCCCeEEE
Confidence 99999976 45799999999999999999877666665554321 122334444445665
Q ss_pred EE----CCCeEEEEECCCcc-eeEEEccCCCCCCcCeEEEccCCCEEEEEe-CCCcEEEEEccCC
Q 001295 584 AG----DDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG 642 (1106)
Q Consensus 584 ~~----~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~ 642 (1106)
++ .|+.|++||+++.. .+.....+. ...+....|++++++|++++ .|+.|++||+.++
T Consensus 229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred EecCCCCCCeEEEEeCCCCCCceeEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 43 47999999998754 333333222 23455567899999999887 5999999999887
No 102
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7e-26 Score=243.08 Aligned_cols=260 Identities=16% Similarity=0.260 Sum_probs=219.3
Q ss_pred CCCCCCCCCcceeeecc-CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCC
Q 001295 332 AFSTPEDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 410 (1106)
Q Consensus 332 ~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 410 (1106)
.+|-.+.....+..+.. +.+.|+++.|+++|.+ ||+|..+|.|.|||..+.+.+.. +.+
T Consensus 198 ~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~-LavG~~~g~v~iwD~~~~k~~~~-------------------~~~ 257 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFGEELVTSVKWSPDGSH-LAVGTSDGTVQIWDVKEQKKTRT-------------------LRG 257 (484)
T ss_pred eEEEEecCCCceEEeEecCCCceEEEEECCCCCE-EEEeecCCeEEEEehhhcccccc-------------------ccC
Confidence 34444555555555555 5899999999999996 99999999999999988877653 455
Q ss_pred -CCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCC
Q 001295 411 -PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 489 (1106)
Q Consensus 411 -h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~ 489 (1106)
|...|-+++|+ +..+.+|+.|+.|..+|+...+.... ++.+|...|..+.|++|+. ++++|+.|+.+.|||..
T Consensus 258 ~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~ 331 (484)
T KOG0305|consen 258 SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGL 331 (484)
T ss_pred CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCC
Confidence 99999999998 77899999999999999998776543 4889999999999999999 89999999999999998
Q ss_pred CCceeEEEeccCCCeEEEeccccCCceEEEEEec--CCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeecc
Q 001295 490 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 567 (1106)
Q Consensus 490 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~ 567 (1106)
...++..+..|.+.|.+++|+|-.. .+||+|+. |++|++||..++..+.... .+..|.++.|++..+
T Consensus 332 ~~~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~k--------- 400 (484)
T KOG0305|consen 332 SPEPKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYK--------- 400 (484)
T ss_pred CccccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCC---------
Confidence 8899999999999999999998876 48888764 9999999999766655443 344577777777665
Q ss_pred ceeEEEEcCCCCEEEE--EECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 568 SLGVVQFDTTKNRFLA--AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 568 ~i~~~~~~~~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
.+++ |..++.|.||+..+.+.+..+.+|. ..|..++++|||..+++|+.|.++++|++-+.
T Consensus 401 ------------Ei~sthG~s~n~i~lw~~ps~~~~~~l~gH~--~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 401 ------------ELLSTHGYSENQITLWKYPSMKLVAELLGHT--SRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ------------EEEEecCCCCCcEEEEeccccceeeeecCCc--ceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 4554 5568899999999999999998774 47999999999999999999999999988664
No 103
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.5e-24 Score=198.75 Aligned_cols=308 Identities=14% Similarity=0.134 Sum_probs=226.8
Q ss_pred cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295 742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 821 (1106)
Q Consensus 742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 821 (1106)
....|.+++|.|.|...+++++..+++|.....-..-..+...+.. ...++. .....|.+.|.|.+|+|+
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~--------pp~v~~--kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQ--------PPSVLC--KRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccC--------CCeEEe--eeccccCccEEEEEecCc
Confidence 5678999999999999999999999998765421100000000000 000111 111238899999999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCcee-----eeecCCCCCeeEEEEecC---CCceEEEee-CCCcEEEEEeecceEEEEec
Q 001295 822 DSYVMSAS-GGKISLFNMMTFKTM-----ATFMPPPPAATFLAFHPQ---DNNIIAIGM-DDSSIQIYNVRVDEVKSKLK 891 (1106)
Q Consensus 822 ~~~l~~~s-dg~i~vwd~~~~~~~-----~~~~~~~~~v~~l~~s~~---d~~~la~g~-~dg~v~iwd~~~~~~~~~l~ 891 (1106)
|++|++|+ |.+|++..+....+. .++.-|.+.|..++|-.+ ++.+|++++ .|..|++-|...|+....+.
T Consensus 101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s 180 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS 180 (350)
T ss_pred cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence 99999999 889998776543332 346779999999999752 356788765 57788888999999999999
Q ss_pred CcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEE
Q 001295 892 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIF 970 (1106)
Q Consensus 892 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~ 970 (1106)
||++.|.++ ++-+|-+++||+.|.+|++||+.-....... -....+.......|.+++..|.|++|+++ .|..-.+|
T Consensus 181 ghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l-~~~~~~~glessavaav~vdpsgrll~sg~~dssc~ly 258 (350)
T KOG0641|consen 181 GHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTL-DNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLY 258 (350)
T ss_pred CCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeec-cCcccCCCcccceeEEEEECCCcceeeeccCCCceEEE
Confidence 999999887 3446889999999999999999864332211 11112222223578999999999999997 78889999
Q ss_pred ecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCC
Q 001295 971 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1050 (1106)
Q Consensus 971 d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 1050 (1106)
|++.++.+..+. .|+..|.|+.|||...||++++.|..|++-|++. .+-..+.. .....|....| .+.|+|.
T Consensus 259 dirg~r~iq~f~--phsadir~vrfsp~a~yllt~syd~~ikltdlqg-dla~el~~--~vv~ehkdk~i---~~rwh~~ 330 (350)
T KOG0641|consen 259 DIRGGRMIQRFH--PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG-DLAHELPI--MVVAEHKDKAI---QCRWHPQ 330 (350)
T ss_pred EeeCCceeeeeC--CCccceeEEEeCCCceEEEEecccceEEEeeccc-chhhcCce--EEEEeccCceE---EEEecCc
Confidence 999999999987 7899999999999999999999999999999864 33222221 11122334433 5999996
Q ss_pred CCCEEEEEeCCCcEEEEeec
Q 001295 1051 EPNEFALGLSDGGVHVFEPL 1070 (1106)
Q Consensus 1051 d~~~l~t~~~Dg~v~vW~~~ 1070 (1106)
| -.+++.+.|.++.+|-+.
T Consensus 331 d-~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 331 D-FSFISSSADKTATLWALN 349 (350)
T ss_pred c-ceeeeccCcceEEEeccC
Confidence 4 567888899999999764
No 104
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.6e-25 Score=213.30 Aligned_cols=239 Identities=21% Similarity=0.227 Sum_probs=202.2
Q ss_pred CCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCc--eEEEeeCCCcEEEEEeecc
Q 001295 808 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN--IIAIGMDDSSIQIYNVRVD 884 (1106)
Q Consensus 808 ~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~--~la~g~~dg~v~iwd~~~~ 884 (1106)
.|...|+++++ ++.++|+|+ |.+|+|||+.....+..+-.|.+.|+++.|.+ +.. .|++|++||.|.+|+..+.
T Consensus 41 aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~W 117 (362)
T KOG0294|consen 41 AHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGSW 117 (362)
T ss_pred ccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCCe
Confidence 49999999998 689999999 99999999999999999999999999999998 543 8999999999999999999
Q ss_pred eEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeC
Q 001295 885 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE 964 (1106)
Q Consensus 885 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d 964 (1106)
.++..+++|.+.|+.++.+|.|++-.+.+.|+.+++||+-+|+......+.. ..+.+.|+|.|.+++++..
T Consensus 118 ~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~---------~at~v~w~~~Gd~F~v~~~ 188 (362)
T KOG0294|consen 118 ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN---------KATLVSWSPQGDHFVVSGR 188 (362)
T ss_pred EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC---------cceeeEEcCCCCEEEEEec
Confidence 9999999999999999999999999999999999999999887544322221 2356999999999999999
Q ss_pred CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceE
Q 001295 965 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLV 1044 (1106)
Q Consensus 965 ~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1044 (1106)
..|-+|.+.+......+.. ...+.|+.|- ++.+|++|.+|+.|.+||.+++...+.+. +|... |. .
T Consensus 189 ~~i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~-------AH~~R-VK--~ 254 (362)
T KOG0294|consen 189 NKIDIYQLDNASVFREIEN---PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL-------AHENR-VK--D 254 (362)
T ss_pred cEEEEEecccHhHhhhhhc---cccceeeeec-CCceEEEecCCceEEEeccCCCccceeee-------cchhh-ee--e
Confidence 9999999998887776642 3567777775 66789999999999999999877777665 33232 55 3
Q ss_pred EE-EeCCCCCEEEEEeCCCcEEEEeecCC
Q 001295 1045 IA-AHPQEPNEFALGLSDGGVHVFEPLES 1072 (1106)
Q Consensus 1045 ~~-~~~~d~~~l~t~~~Dg~v~vW~~~~~ 1072 (1106)
+. |...++.+|+|+++||.|+|||++..
T Consensus 255 i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 255 IASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEecCCceEEEEeccCceEEEEEcccc
Confidence 44 33336789999999999999999877
No 105
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.3e-26 Score=227.84 Aligned_cols=243 Identities=17% Similarity=0.239 Sum_probs=196.8
Q ss_pred eeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCC
Q 001295 345 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 424 (1106)
Q Consensus 345 ~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 424 (1106)
.+-+|.+.|.|++=+|..-..+|+|+.||.|+|||+.+.+++. .+..|.+.|..+++..
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~-------------------~f~AH~G~V~Gi~v~~-- 119 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR-------------------TFKAHEGLVRGICVTQ-- 119 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh-------------------eeecccCceeeEEecc--
Confidence 3345999999999999984469999999999999999887776 3789999999999987
Q ss_pred CEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCe
Q 001295 425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 504 (1106)
Q Consensus 425 ~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 504 (1106)
..+++++.|++|+.|.++.. .++ ++.+ ...+..+.-+..+. .++|||. .|.|||.....+++.+.--...|
T Consensus 120 ~~~~tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti 190 (433)
T KOG0268|consen 120 TSFFTVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWGADSI 190 (433)
T ss_pred cceEEecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCc--eeeecccccCCccceeecCCCce
Confidence 67889999999999998873 222 4433 34567777666666 7899986 49999999999999999888899
Q ss_pred EEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEE
Q 001295 505 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 584 (1106)
Q Consensus 505 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 584 (1106)
.++.|+|... ..|++|+.|+.|.+||++...++....... ..+.++|+|.+-.++++
T Consensus 191 ~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~~m----------------------RTN~IswnPeafnF~~a 247 (433)
T KOG0268|consen 191 SSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVILTM----------------------RTNTICWNPEAFNFVAA 247 (433)
T ss_pred eEEecCCCcc-hheeeeccCCceEEEecccCCccceeeeec----------------------cccceecCccccceeec
Confidence 9999988766 689999999999999999877765432211 22335566655568889
Q ss_pred ECCCeEEEEECCCc-ceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 585 GDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 585 ~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
++|..++.||++.- +++.....| ...|.+++|||.|+-+++|+.|.+|+||..+.+
T Consensus 248 ~ED~nlY~~DmR~l~~p~~v~~dh--vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 248 NEDHNLYTYDMRNLSRPLNVHKDH--VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred cccccceehhhhhhcccchhhccc--ceeEEEeccCCCcchhccccccceEEEeecCCC
Confidence 99999999999764 345555544 558999999999999999999999999988765
No 106
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=2.4e-25 Score=237.23 Aligned_cols=241 Identities=17% Similarity=0.302 Sum_probs=205.8
Q ss_pred eeeecc-CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEE-EEE
Q 001295 343 VTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR-VIW 420 (1106)
Q Consensus 343 ~~~~~~-h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~-l~~ 420 (1106)
+.+.+. |++.|..+++.+.. .+++|+.||++++|+-..++-+.. +.+.+|.+.|.+ +++
T Consensus 6 ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~-----------------~~~~~~~g~i~~~i~y 66 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLET-----------------HAFEGPKGFIANSICY 66 (745)
T ss_pred eEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccc-----------------eecccCcceeecccee
Confidence 344454 99999999988877 388999999999999766554432 235778888888 888
Q ss_pred cc-CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEec
Q 001295 421 SP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 499 (1106)
Q Consensus 421 sp-dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 499 (1106)
-+ ++-.|++|+.|.+|.+|...+.+.+. .|.||...|.++....++. ++|||.|.++++|- .+++...+.+
T Consensus 67 ~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~g 138 (745)
T KOG0301|consen 67 AESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQG 138 (745)
T ss_pred ccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccCC
Confidence 86 66679999999999999999987665 7999999999999887775 89999999999995 5677788999
Q ss_pred cCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCC
Q 001295 500 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 579 (1106)
Q Consensus 500 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~ 579 (1106)
|...|+++...+. ..++||+.|++|++|.- +....++.+|...|..+++-+++.
T Consensus 139 H~asVWAv~~l~e---~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~--------------------- 192 (745)
T KOG0301|consen 139 HTASVWAVASLPE---NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH--------------------- 192 (745)
T ss_pred cchheeeeeecCC---CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC---------------------
Confidence 9999999987554 37999999999999964 577788999999999999999876
Q ss_pred EEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEcc
Q 001295 580 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 640 (1106)
Q Consensus 580 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 640 (1106)
|++++.||.|++|++ +|+.+..+.+| ...+.+++...++..+++++.|++++||+..
T Consensus 193 -flScsNDg~Ir~w~~-~ge~l~~~~gh--tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 193 -FLSCSNDGSIRLWDL-DGEVLLEMHGH--TNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred -eEeecCCceEEEEec-cCceeeeeecc--ceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 999999999999999 78888887666 5579999988899999999999999999864
No 107
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=1.4e-25 Score=228.57 Aligned_cols=269 Identities=14% Similarity=0.224 Sum_probs=218.5
Q ss_pred ceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEc
Q 001295 342 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 421 (1106)
Q Consensus 342 ~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 421 (1106)
+....+.|.++|+.+.+-|....++|+++..+.|.|||+.+....... . +.-.+...+.+|...=+.|+|+
T Consensus 116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~------~---~~~~Pdl~L~gH~~eg~glsWn 186 (422)
T KOG0264|consen 116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA------S---GECRPDLRLKGHEKEGYGLSWN 186 (422)
T ss_pred EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc------c---ccCCCceEEEeecccccccccc
Confidence 455567799999999999999999999999999999999765433210 0 0111223588999988899999
Q ss_pred c-CCCEEEEEeCCCeEEEEEccCCce----eeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCC--CCcee
Q 001295 422 P-DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT--NGAKQ 494 (1106)
Q Consensus 422 p-dg~~las~~~d~~v~iwd~~~~~~----~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~--~~~~~ 494 (1106)
+ ..-+|++++.|++|++||+..... +.....+.+|...|..++|++-... +|+++++|+.+.|||++ +.++.
T Consensus 187 ~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~ 265 (422)
T KOG0264|consen 187 RQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPS 265 (422)
T ss_pred cccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCc
Confidence 9 455789999999999999985433 5556678999999999999998887 79999999999999999 56667
Q ss_pred EEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCC-ceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEE
Q 001295 495 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 573 (1106)
Q Consensus 495 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 573 (1106)
....+|.+.|+|++|+|.. +.+|++||.|++|++||+++.. ++..+..|...|..+.|+|...
T Consensus 266 ~~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~e--------------- 329 (422)
T KOG0264|consen 266 HSVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNE--------------- 329 (422)
T ss_pred ccccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCC---------------
Confidence 7888999999999998865 4899999999999999999865 4558888999999999998775
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCcce------------eEEEccCCCCCCcCeEEEccCCC-EEEEEeCCCcEEEEEcc
Q 001295 574 FDTTKNRFLAAGDDFSIKFWDMDSVQL------------LTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATS 640 (1106)
Q Consensus 574 ~~~~~~~l~~~~~d~~i~iwd~~~~~~------------~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~ 640 (1106)
..|++++.|+.+.+||+..-.. ...|...+|...|..+.|+|+.. .+++.+.|+.+.||...
T Consensus 330 -----tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 330 -----TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred -----ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 3588899999999999864221 12244456677899999999655 56778899999999875
Q ss_pred C
Q 001295 641 D 641 (1106)
Q Consensus 641 ~ 641 (1106)
.
T Consensus 405 ~ 405 (422)
T KOG0264|consen 405 E 405 (422)
T ss_pred c
Confidence 3
No 108
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=2.1e-24 Score=242.99 Aligned_cols=235 Identities=14% Similarity=0.196 Sum_probs=181.0
Q ss_pred EeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC-CCEEEEEeCCCeEEEEEccCCce-
Q 001295 369 GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDE- 446 (1106)
Q Consensus 369 g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~las~~~d~~v~iwd~~~~~~- 446 (1106)
|+.++.|++|+......+. .+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v~-------------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI-------------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceEE-------------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 4456677777765543332 37899999999999996 89999999999999999986432
Q ss_pred e----eeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEe
Q 001295 447 V----RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA 522 (1106)
Q Consensus 447 ~----~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~ 522 (1106)
. .....+.+|...|.+++|+|++.. ++++++.|++|+|||+++++.+..+. |...|.+++|++ +|.+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEe
Confidence 1 123357899999999999999874 56899999999999999999888776 667899999865 457999999
Q ss_pred cCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCC----eEEEEECCC-
Q 001295 523 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF----SIKFWDMDS- 597 (1106)
Q Consensus 523 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~i~iwd~~~- 597 (1106)
.|+.|++||++++.....+..|.+.+.... +....+++++.++++++.++ .|++||++.
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~----------------v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKN----------------IWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT 250 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEE----------------EEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC
Confidence 999999999999877777777765443322 22233556777899887664 799999985
Q ss_pred cceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 598 VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 598 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
++++..+..+.....+......++|.++++|+.|+.|++|++..+
T Consensus 251 ~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 251 TSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 666766655544333333344557999999999999999999765
No 109
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.4e-25 Score=237.00 Aligned_cols=276 Identities=18% Similarity=0.251 Sum_probs=228.4
Q ss_pred cEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeC
Q 001295 353 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS 432 (1106)
Q Consensus 353 v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 432 (1106)
.+-+.||..+ +||+|. +..|.+|+-.+++.... ...++..|+++.|+++|.+||+|..
T Consensus 180 ~nlldWss~n--~laVal-g~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~ 237 (484)
T KOG0305|consen 180 LNLLDWSSAN--VLAVAL-GQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTS 237 (484)
T ss_pred hhHhhcccCC--eEEEEe-cceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeec
Confidence 3456788555 477765 46899999999886542 2333789999999999999999999
Q ss_pred CCeEEEEEccCCceeeeeeeecc-ccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEE-EeccCCCeEEEecc
Q 001295 433 RHIVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI-FEGHEAPVYSVCPH 510 (1106)
Q Consensus 433 d~~v~iwd~~~~~~~~~~~~l~~-h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~ 510 (1106)
+|.|.|||....+.++ .+.+ |...|.+++|. +. .+.+|+.|+.|..+|++..+.... +.+|...|..+.|+
T Consensus 238 ~g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws 310 (484)
T KOG0305|consen 238 DGTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS 310 (484)
T ss_pred CCeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence 9999999999877665 5677 99999999998 44 789999999999999998877665 88999999999986
Q ss_pred ccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEE--ECCC
Q 001295 511 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA--GDDF 588 (1106)
Q Consensus 511 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~d~ 588 (1106)
+ ++.++++|+.|+.+.|||....+.+..+..|...|..++|+|-.. ..||+| +.|+
T Consensus 311 ~--d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~--------------------~lLAsGGGs~D~ 368 (484)
T KOG0305|consen 311 P--DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQS--------------------GLLATGGGSADR 368 (484)
T ss_pred C--CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCcc--------------------CceEEcCCCccc
Confidence 5 458999999999999999988899999999999999999988655 357774 4799
Q ss_pred eEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEE--eCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCC
Q 001295 589 SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS--TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 666 (1106)
Q Consensus 589 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (1106)
.|++||..+++.+..+.... .|.++.|++..+-|+++ ..++.|.||+..+. ..+..+
T Consensus 369 ~i~fwn~~~g~~i~~vdtgs---QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-~~~~~l----------------- 427 (484)
T KOG0305|consen 369 CIKFWNTNTGARIDSVDTGS---QVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-KLVAEL----------------- 427 (484)
T ss_pred EEEEEEcCCCcEecccccCC---ceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-ceeeee-----------------
Confidence 99999999999998886543 59999999988766654 45678899987653 111111
Q ss_pred cCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccce
Q 001295 667 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 746 (1106)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i 746 (1106)
.+|..+|
T Consensus 428 -------------------------------------------------------------------------~gH~~RV 434 (484)
T KOG0305|consen 428 -------------------------------------------------------------------------LGHTSRV 434 (484)
T ss_pred -------------------------------------------------------------------------cCCccee
Confidence 2488899
Q ss_pred EEEEEcCCCceEEEeecCceEEEeecc
Q 001295 747 SRLIFTNSGNAILALASNAIHLLWKWQ 773 (1106)
Q Consensus 747 ~~~~~s~~~~~l~~~~~dg~i~iw~~~ 773 (1106)
..++++|||..+++++.|.++++|++-
T Consensus 435 l~la~SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 435 LYLALSPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred EEEEECCCCCEEEEecccCcEEecccc
Confidence 999999999999999999999999753
No 110
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=6.9e-26 Score=239.27 Aligned_cols=374 Identities=16% Similarity=0.189 Sum_probs=271.2
Q ss_pred CCCcCeE---EEEEcc-CCCEEEEEeCCCeEEEEEccCCcee--e-eeeeeccccCCeeEEEEcCCCCceEEEEecCCCc
Q 001295 410 DPGVSVN---RVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEV--R-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT 482 (1106)
Q Consensus 410 ~h~~~V~---~l~~sp-dg~~las~~~d~~v~iwd~~~~~~~--~-~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~ 482 (1106)
.|...|. .+..+. +++||.+||.||.|++|++...... . ....++.|.+.|+.++...+++ .|+|+|.|-+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtT 96 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTT 96 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCce
Confidence 3444455 455554 7788999999999999998754321 1 2346889999999999999998 6999999999
Q ss_pred EEEEeCCCC--ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeE
Q 001295 483 IKVWDATNG--AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT 560 (1106)
Q Consensus 483 i~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 560 (1106)
|++|+...+ -+..++..|...|.|+++- ..+..++++||.|+.|.+||+.++.....
T Consensus 97 VK~W~~~~~~~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~-------------------- 155 (735)
T KOG0308|consen 97 VKVWNAHKDNTFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLV-------------------- 155 (735)
T ss_pred EEEeecccCcchhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhh--------------------
Confidence 999999887 6778899999999999973 44557999999999999999986432100
Q ss_pred EEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEcc
Q 001295 561 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 640 (1106)
Q Consensus 561 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 640 (1106)
++. ..+..=++.. +....|.+++.++.|..+++|+..+.+++||.+
T Consensus 156 -----------------------~s~-n~~t~~sl~s----------G~k~siYSLA~N~t~t~ivsGgtek~lr~wDpr 201 (735)
T KOG0308|consen 156 -----------------------ASF-NNVTVNSLGS----------GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPR 201 (735)
T ss_pred -----------------------hhc-cccccccCCC----------CCccceeeeecCCcceEEEecCcccceEEeccc
Confidence 000 0011101111 224468899999999999999999999999987
Q ss_pred CCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceee
Q 001295 641 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV 720 (1106)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v 720 (1106)
+.++..+
T Consensus 202 t~~kimk------------------------------------------------------------------------- 208 (735)
T KOG0308|consen 202 TCKKIMK------------------------------------------------------------------------- 208 (735)
T ss_pred cccceee-------------------------------------------------------------------------
Confidence 7622111
Q ss_pred EecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcc
Q 001295 721 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM 800 (1106)
Q Consensus 721 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 800 (1106)
T Consensus 209 -------------------------------------------------------------------------------- 208 (735)
T KOG0308|consen 209 -------------------------------------------------------------------------------- 208 (735)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEE
Q 001295 801 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 879 (1106)
Q Consensus 801 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iw 879 (1106)
+. +|...|.++..++||..+++++ ||+|++||+...+++.++..|...|.++..+| +=..+.+|+.||.|+.=
T Consensus 209 ---Lr--GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~-sf~~vYsG~rd~~i~~T 282 (735)
T KOG0308|consen 209 ---LR--GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP-SFTHVYSGGRDGNIYRT 282 (735)
T ss_pred ---ee--ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC-CcceEEecCCCCcEEec
Confidence 11 2777788888888898888887 89999999999999999999999999999999 88899999999999999
Q ss_pred EeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEE
Q 001295 880 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 959 (1106)
Q Consensus 880 d~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l 959 (1106)
|+.+......+-....+|..+..+.+..-+-+++.|+.|+-|.... ...+++.|.+.
T Consensus 283 dl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~-----------------------~~~l~~s~~~~ 339 (735)
T KOG0308|consen 283 DLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP-----------------------DIALSVSGDLD 339 (735)
T ss_pred ccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcc-----------------------ccccccCCCCC
Confidence 9988432222223445677777765444556778899999997654 12344445544
Q ss_pred EEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295 960 LVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus 960 ~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
..+.+....+++... ..-..+ .| ..+|..-++-.|.++++|-...|.+.+||+-..+.+..+.
T Consensus 340 ~~~T~~~~~~~~~~~-tp~~vi--~G-g~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g 402 (735)
T KOG0308|consen 340 FFSTDSNNHSCDLTN-TPDSVI--PG-GAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG 402 (735)
T ss_pred cccccCCCccccccC-CCceec--cC-chhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence 444444444444321 111111 12 4567777778899999999999999999998776655443
No 111
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4.1e-25 Score=224.66 Aligned_cols=292 Identities=16% Similarity=0.191 Sum_probs=225.7
Q ss_pred ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeee--------------eeee-ccccCCeeEEEEcCCCCc
Q 001295 407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ--------------HLEI-DAHVGGVNDIAFSHPNKQ 471 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~--------------~~~l-~~h~~~V~~~~~s~d~~~ 471 (1106)
....|.-+|.||+++||+++..+++.|++|.=|++.+|+..+- ...- ++|...|.+++.++||+
T Consensus 137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk- 215 (479)
T KOG0299|consen 137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK- 215 (479)
T ss_pred eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc-
Confidence 3678999999999999999999999999999999998874310 0011 37889999999999999
Q ss_pred eEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEE
Q 001295 472 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM 551 (1106)
Q Consensus 472 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 551 (1106)
+|++|+.|..|.|||.++.+.++.+.+|.+.|.+++|-... +.+++++.|+.|++|+++....+.++-+|...|.++
T Consensus 216 -ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 216 -YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred -EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 89999999999999999999999999999999999986544 579999999999999999988888888999888888
Q ss_pred EEecCCCeEEEeeeccceeEEEEcCCCCEEEE-EECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeC
Q 001295 552 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA-AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN 630 (1106)
Q Consensus 552 ~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 630 (1106)
....-++ +++ |+.|+++++|++.... ...+.++ ...+-|++|-. ...+++|++
T Consensus 293 daL~reR----------------------~vtVGgrDrT~rlwKi~ees-qlifrg~--~~sidcv~~In-~~HfvsGSd 346 (479)
T KOG0299|consen 293 DALSRER----------------------CVTVGGRDRTVRLWKIPEES-QLIFRGG--EGSIDCVAFIN-DEHFVSGSD 346 (479)
T ss_pred chhcccc----------------------eEEeccccceeEEEeccccc-eeeeeCC--CCCeeeEEEec-ccceeeccC
Confidence 7766665 555 6699999999995433 3344444 33578888875 457889999
Q ss_pred CCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccc
Q 001295 631 DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRI 710 (1106)
Q Consensus 631 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 710 (1106)
+|.|.+|++...+.++..-..|.-...
T Consensus 347 nG~IaLWs~~KKkplf~~~~AHgv~~~----------------------------------------------------- 373 (479)
T KOG0299|consen 347 NGSIALWSLLKKKPLFTSRLAHGVIPE----------------------------------------------------- 373 (479)
T ss_pred CceEEEeeecccCceeEeeccccccCC-----------------------------------------------------
Confidence 999999998776322221111111000
Q ss_pred cccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCcc
Q 001295 711 TEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQ 790 (1106)
Q Consensus 711 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 790 (1106)
. ....+...|++++..|....+++++.+|.+++|.+..+..
T Consensus 374 ---------------------~-----~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r------------- 414 (479)
T KOG0299|consen 374 ---------------------L-----DPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR------------- 414 (479)
T ss_pred ---------------------c-----cccccccceeeeEecccCceEEecCCCCceEEEEecCCcc-------------
Confidence 0 0001335899999999999999999999999998764321
Q ss_pred ccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe
Q 001295 791 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 829 (1106)
Q Consensus 791 ~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s 829 (1106)
....+......+.|++++|+++|+++++|.
T Consensus 415 ---------~i~~l~~ls~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 415 ---------AINLLYSLSLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred ---------ccceeeecccccEEEEEEEccCCCEEEEec
Confidence 111111123577899999999999888885
No 112
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=9.9e-25 Score=209.75 Aligned_cols=206 Identities=18% Similarity=0.205 Sum_probs=161.8
Q ss_pred cCCCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEEccCC-ceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEE
Q 001295 408 VKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGG-DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 485 (1106)
Q Consensus 408 ~~~h~~~V~~l~~sp-dg~~las~~~d~~v~iwd~~~~-~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~i 485 (1106)
-...++.|.+|+||| ...+++.+|.|++||+|++... .... .....|.++|.+++|+.||. .+++|+.|+.+++
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~ 98 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKL 98 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc--hhhhccCCCeEEEEEccCCc--eEEeeccCCceEE
Confidence 356678999999999 5666778999999999999873 3322 24567999999999999998 7999999999999
Q ss_pred EeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeee
Q 001295 486 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 565 (1106)
Q Consensus 486 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~ 565 (1106)
||+.+++ +..+..|.++|..+.|.+..+-..|++|+.|++|++||++...++..+..++. +.++..
T Consensus 99 wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-vYa~Dv------------ 164 (347)
T KOG0647|consen 99 WDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-VYAADV------------ 164 (347)
T ss_pred EEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-eeehhc------------
Confidence 9999995 56677799999999998777667899999999999999998888777766654 222211
Q ss_pred ccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 566 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 566 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
....++.+..++.|.+|+++.+..........-.-.++|++..+|....+.|+-+|.+.|..+..+
T Consensus 165 -----------~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~ 230 (347)
T KOG0647|consen 165 -----------LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDP 230 (347)
T ss_pred -----------cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCC
Confidence 112477788999999999977643322211111235789999998888899999999999887664
No 113
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.4e-24 Score=208.04 Aligned_cols=313 Identities=15% Similarity=0.205 Sum_probs=212.0
Q ss_pred ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCce-----eeeeeeeccccCCeeEEEEcCCCCceEEEEecCCC
Q 001295 407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE-----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 481 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~-----~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~ 481 (1106)
.|++|.+.|++++||.||++||+++.|++|+||+++.... ++... .-+--+.++|+||-+. +++++-...
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv----e~dhpT~V~FapDc~s-~vv~~~~g~ 155 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV----EYDHPTRVVFAPDCKS-VVVSVKRGN 155 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc----cCCCceEEEECCCcce-EEEEEccCC
Confidence 5899999999999999999999999999999999986432 22111 1223577899999886 566666677
Q ss_pred cEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEE
Q 001295 482 TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 561 (1106)
Q Consensus 482 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 561 (1106)
++++|-+...+. .. .+-..+ -||-.... ..|.-.+..+-
T Consensus 156 ~l~vyk~~K~~d-G~-----~~~~~v---------------------~~D~~~f~-----~kh~v~~i~iG--------- 194 (420)
T KOG2096|consen 156 KLCVYKLVKKTD-GS-----GSHHFV---------------------HIDNLEFE-----RKHQVDIINIG--------- 194 (420)
T ss_pred EEEEEEeeeccc-CC-----CCcccc---------------------cccccccc-----hhcccceEEEe---------
Confidence 788886432221 00 111111 11100000 00111111121
Q ss_pred EeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccC
Q 001295 562 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 641 (1106)
Q Consensus 562 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 641 (1106)
....+.++++++.|..|.+|+++ |+.+..+..... .-...+.||+|+++++++..-.+++|.+--
T Consensus 195 ------------iA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~--~n~~aavSP~GRFia~~gFTpDVkVwE~~f 259 (420)
T KOG2096|consen 195 ------------IAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS--SNYDAAVSPDGRFIAVSGFTPDVKVWEPIF 259 (420)
T ss_pred ------------ecCCceEEEEecCCCcEEEEecC-Cceeeeeccccc--cccceeeCCCCcEEEEecCCCCceEEEEEe
Confidence 22233478899999999999997 888888865432 346789999999999999999999998632
Q ss_pred CchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeE
Q 001295 642 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 721 (1106)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw 721 (1106)
++ .+ .|. ...+++
T Consensus 260 ~k------dG--------------~fq-----------------------------------------------ev~rvf 272 (420)
T KOG2096|consen 260 TK------DG--------------TFQ-----------------------------------------------EVKRVF 272 (420)
T ss_pred cc------Cc--------------chh-----------------------------------------------hhhhhh
Confidence 20 00 000 011222
Q ss_pred ecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccc-cCCCCccccccCccccCCCCCCcc
Q 001295 722 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTE-RNSSGKATASVAPQLWQPPSGIMM 800 (1106)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~ 800 (1106)
.+ .+|...|..++|+++...+++++.||.++|||++-.- ...+.+.+. .|.
T Consensus 273 ~L----------------kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk----------~g~-- 324 (420)
T KOG2096|consen 273 SL----------------KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILK----------EGS-- 324 (420)
T ss_pred ee----------------ccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhh----------cCC--
Confidence 22 3599999999999999999999999999999986321 111111111 111
Q ss_pred ccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeee-cCCCCCeeEEEEecCCCceEEEeeCCCcEEEE
Q 001295 801 TNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATF-MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 879 (1106)
Q Consensus 801 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~-~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iw 879 (1106)
..+. ........++++|+|+.||.+....|++|..++++..-++ ..|...|.+|+|++ +|+++|+++ |..++++
T Consensus 325 -~pl~--aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~~atcG-dr~vrv~ 399 (420)
T KOG2096|consen 325 -APLH--AAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSS-DGKYIATCG-DRYVRVI 399 (420)
T ss_pred -cchh--hcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecC-CCcEEeeec-ceeeeee
Confidence 0011 1233445899999999999999999999999998877665 45888999999999 999999886 6788887
Q ss_pred E
Q 001295 880 N 880 (1106)
Q Consensus 880 d 880 (1106)
.
T Consensus 400 ~ 400 (420)
T KOG2096|consen 400 R 400 (420)
T ss_pred c
Confidence 6
No 114
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.3e-25 Score=220.77 Aligned_cols=285 Identities=16% Similarity=0.227 Sum_probs=219.0
Q ss_pred cCCCCcCeEEEEEccCC-CEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295 408 VKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 486 (1106)
Q Consensus 408 ~~~h~~~V~~l~~spdg-~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 486 (1106)
|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+...+++. ++..|.+.|..|++.. . .++++|+|++|+.|
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~---~f~AH~G~V~Gi~v~~--~--~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR---TFKAHEGLVRGICVTQ--T--SFFTVGDDKTVKQW 134 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh---eeecccCceeeEEecc--c--ceEEecCCcceeee
Confidence 68999999999999976 889999999999999999877666 7899999999999987 3 58999999999999
Q ss_pred eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeec
Q 001295 487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 566 (1106)
Q Consensus 487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 566 (1106)
-+.- .+++++.+ ...+..+.-+. .+..++|||.+ |.|||.....++..+.-....+.++.|+|-..
T Consensus 135 k~~~-~p~~tilg-~s~~~gIdh~~--~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvET-------- 200 (433)
T KOG0268|consen 135 KIDG-PPLHTILG-KSVYLGIDHHR--KNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVET-------- 200 (433)
T ss_pred eccC-Ccceeeec-ccccccccccc--ccccccccCce--eeecccccCCccceeecCCCceeEEecCCCcc--------
Confidence 8665 46666654 34455555332 23578888754 89999887666665555555555555555443
Q ss_pred cceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhh
Q 001295 567 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 646 (1106)
Q Consensus 567 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 646 (1106)
..|++++.|+.|.+||++++.+++.+...- .-+.++|+|.+-.+++|+.|..++.+|++.-...+
T Consensus 201 ------------sILas~~sDrsIvLyD~R~~~Pl~KVi~~m---RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~ 265 (433)
T KOG0268|consen 201 ------------SILASCASDRSIVLYDLRQASPLKKVILTM---RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL 265 (433)
T ss_pred ------------hheeeeccCCceEEEecccCCccceeeeec---cccceecCccccceeeccccccceehhhhhhcccc
Confidence 246667799999999999999888775432 35779999988899999999999999997664444
Q ss_pred hhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCC
Q 001295 647 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 726 (1106)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 726 (1106)
....
T Consensus 266 ~v~~---------------------------------------------------------------------------- 269 (433)
T KOG0268|consen 266 NVHK---------------------------------------------------------------------------- 269 (433)
T ss_pred hhhc----------------------------------------------------------------------------
Confidence 3332
Q ss_pred CCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCC
Q 001295 727 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 806 (1106)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 806 (1106)
+|...|.++.|+|.|+.+++++-|.+|+||....+... |+ ..+
T Consensus 270 --------------dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SR--------------di----Yht----- 312 (433)
T KOG0268|consen 270 --------------DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSR--------------DI----YHT----- 312 (433)
T ss_pred --------------ccceeEEEeccCCCcchhccccccceEEEeecCCCcch--------------hh----hhH-----
Confidence 26778899999999999999999999999986532110 00 000
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCc
Q 001295 807 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK 842 (1106)
Q Consensus 807 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~ 842 (1106)
..-..|.|+.||.|.+++++|+ |+.|++|.....+
T Consensus 313 -kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 313 -KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred -hhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 0234589999999999999999 7999999876443
No 115
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=2.9e-24 Score=216.26 Aligned_cols=280 Identities=18% Similarity=0.309 Sum_probs=228.9
Q ss_pred CCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccc
Q 001295 611 PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM 690 (1106)
Q Consensus 611 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1106)
..+.++...+....+.+|+.|..+.++|...+ +.+..+.|
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~-q~l~~~~G--------------------------------------- 259 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSN-QILATLKG--------------------------------------- 259 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchh-hhhhhccC---------------------------------------
Confidence 35677777777788999999999999998877 66665544
Q ss_pred cccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEe
Q 001295 691 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW 770 (1106)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw 770 (1106)
|...|+.+.|+++...+++++.|..|+||
T Consensus 260 ---------------------------------------------------h~kki~~v~~~~~~~~v~~aSad~~i~vw 288 (506)
T KOG0289|consen 260 ---------------------------------------------------HTKKITSVKFHKDLDTVITASADEIIRVW 288 (506)
T ss_pred ---------------------------------------------------cceEEEEEEeccchhheeecCCcceEEee
Confidence 66678899999999999999999999999
Q ss_pred eccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecC
Q 001295 771 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP 849 (1106)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~ 849 (1106)
....... ... . ..|..+|+.+...|.|.||++++ |++..+.|++++.++.....
T Consensus 289 s~~~~s~----------------------~~~-~--~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~ 343 (506)
T KOG0289|consen 289 SVPLSSE----------------------PTS-S--RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD 343 (506)
T ss_pred ccccccC----------------------ccc-c--ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee
Confidence 7653110 000 1 23999999999999999999999 89999999999998776553
Q ss_pred --CCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcc
Q 001295 850 --PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 927 (1106)
Q Consensus 850 --~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~ 927 (1106)
..-.+++.+|+| ||.++++|..||.|+|||+.++..+..|.+|+++|.+++|+.+|-|||++++|+.|++||++.-+
T Consensus 344 ~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 344 ETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK 422 (506)
T ss_pred ccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc
Confidence 234589999999 99999999999999999999999999999999999999999999999999999999999998754
Q ss_pred cccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecC--CceEeeecccCCCCCCeeEEEECCCCCEEEE
Q 001295 928 KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETT--KLECVKQWVPRESSAPITHATFSCDSQLVYA 1004 (1106)
Q Consensus 928 ~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~--~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t 1004 (1106)
..+. +..... ..+..+.|.+.|++|+.+ .+=+|++++-. ...++..+. .|++..+.+.|..+.+++++
T Consensus 423 n~kt--~~l~~~-----~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~--~~sg~st~v~Fg~~aq~l~s 493 (506)
T KOG0289|consen 423 NFKT--IQLDEK-----KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELA--DHSGLSTGVRFGEHAQYLAS 493 (506)
T ss_pred ccce--eecccc-----ccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhh--hcccccceeeecccceEEee
Confidence 3222 222211 257899999999999995 55566666643 345555554 77889999999999999999
Q ss_pred EEcCCeEEEEEc
Q 001295 1005 CFLDATVCVFSA 1016 (1106)
Q Consensus 1005 ~s~Dg~i~vwd~ 1016 (1106)
++.|..++++.+
T Consensus 494 ~smd~~l~~~a~ 505 (506)
T KOG0289|consen 494 TSMDAILRLYAL 505 (506)
T ss_pred ccchhheEEeec
Confidence 999999888754
No 116
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=3.2e-24 Score=215.94 Aligned_cols=282 Identities=20% Similarity=0.279 Sum_probs=230.5
Q ss_pred CCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCc
Q 001295 458 GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS 537 (1106)
Q Consensus 458 ~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 537 (1106)
..+.++...+... .+++|+.|..+.++|..+++.+..++||...|+.+.+++.. ..+++++.|..|++|.......
T Consensus 220 pgi~ald~~~s~~--~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~--~~v~~aSad~~i~vws~~~~s~ 295 (506)
T KOG0289|consen 220 PGITALDIIPSSS--KILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDL--DTVITASADEIIRVWSVPLSSE 295 (506)
T ss_pred CCeeEEeecCCCC--cceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccch--hheeecCCcceEEeeccccccC
Confidence 4577888888745 69999999999999999999999999999999999988766 5799999999999999887776
Q ss_pred eeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEE
Q 001295 538 RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIR 617 (1106)
Q Consensus 538 ~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 617 (1106)
......|..+|+.+...|.| .||++++.|+...+.|+.++..+...........+++.+
T Consensus 296 ~~~~~~h~~~V~~ls~h~tg---------------------eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 296 PTSSRPHEEPVTGLSLHPTG---------------------EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred ccccccccccceeeeeccCC---------------------cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 66666676666666555555 599999999999999999999888876543344688999
Q ss_pred EccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCC
Q 001295 618 FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMN 697 (1106)
Q Consensus 618 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1106)
|+|||.++.+|+.||.++|||+.++. ....
T Consensus 355 fHpDgLifgtgt~d~~vkiwdlks~~-~~a~------------------------------------------------- 384 (506)
T KOG0289|consen 355 FHPDGLIFGTGTPDGVVKIWDLKSQT-NVAK------------------------------------------------- 384 (506)
T ss_pred EcCCceEEeccCCCceEEEEEcCCcc-cccc-------------------------------------------------
Confidence 99999999999999999999987651 0000
Q ss_pred CCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeecccccc
Q 001295 698 GDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTER 777 (1106)
Q Consensus 698 ~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 777 (1106)
T Consensus 385 -------------------------------------------------------------------------------- 384 (506)
T KOG0289|consen 385 -------------------------------------------------------------------------------- 384 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCC-CCCee
Q 001295 778 NSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP-PPAAT 855 (1106)
Q Consensus 778 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~-~~~v~ 855 (1106)
++ +|.++|..++|+.||-||++++ |+.|++||++..+...++... ..++.
T Consensus 385 --------------------------Fp--ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~ 436 (506)
T KOG0289|consen 385 --------------------------FP--GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVN 436 (506)
T ss_pred --------------------------CC--CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccce
Confidence 11 2777888888888888888888 677888888877766666433 34799
Q ss_pred EEEEecCCCceEEEeeCCCcEEEEEee--cceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeC
Q 001295 856 FLAFHPQDNNIIAIGMDDSSIQIYNVR--VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 923 (1106)
Q Consensus 856 ~l~~s~~d~~~la~g~~dg~v~iwd~~--~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~ 923 (1106)
++.|.+ .|.+|+.++.|=+|++++-. ++.++..+..|++..+++.|..+.++++++|.|..++++.+
T Consensus 437 s~~fD~-SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 437 SLSFDQ-SGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eEEEcC-CCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 999998 89999999877555555532 57888899999999999999999999999999999988764
No 117
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=2e-24 Score=230.21 Aligned_cols=274 Identities=14% Similarity=0.233 Sum_probs=225.5
Q ss_pred cccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccc-cccCCCCCCCCeeE-EE
Q 001295 740 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT-NDVTDSNPEEAVPC-FA 817 (1106)
Q Consensus 740 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~v~~-l~ 817 (1106)
.+|...|..+++.+.. .+++++.||++++|+-... ..+. ..+. +|.+.|.+ ++
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~----------------------~~l~~~~~~--~~~g~i~~~i~ 65 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGK----------------------QYLETHAFE--GPKGFIANSIC 65 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccCc----------------------ccccceecc--cCcceeeccce
Confidence 4688889888877666 5899999999999975321 1111 1121 25666665 77
Q ss_pred Eec-CCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCccc
Q 001295 818 LSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 895 (1106)
Q Consensus 818 ~s~-~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~ 895 (1106)
+.+ ++-.+++|+ |.+|.+|...+...+.++.+|...|.++.... ++. +++|+.|.++++|-. +++...+.+|..
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~a 141 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTA 141 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcch
Confidence 775 444577887 99999999999999999999999999999776 565 999999999999976 456677999999
Q ss_pred CeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCc
Q 001295 896 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL 975 (1106)
Q Consensus 896 ~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~ 975 (1106)
.|+++++-|++ .++|||.|.+|++|.-.+ .++.+.||.. .|+.+++-+++.++.++.||.|+.|++ ++
T Consensus 142 sVWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHtD---~VRgL~vl~~~~flScsNDg~Ir~w~~-~g 209 (745)
T KOG0301|consen 142 SVWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHTD---CVRGLAVLDDSHFLSCSNDGSIRLWDL-DG 209 (745)
T ss_pred heeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccchh---heeeeEEecCCCeEeecCCceEEEEec-cC
Confidence 99999999988 899999999999998754 6788888886 999999999999999999999999999 68
Q ss_pred eEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEE
Q 001295 976 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1055 (1106)
Q Consensus 976 ~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l 1055 (1106)
+++.... +|..-|+++....++..++++++|++++||+.. ++.+.+. +|. ..++ ++.+.+ ..-+
T Consensus 210 e~l~~~~--ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~----lPt----tsiW--sa~~L~--NgDI 273 (745)
T KOG0301|consen 210 EVLLEMH--GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT----LPT----TSIW--SAKVLL--NGDI 273 (745)
T ss_pred ceeeeee--ccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe----cCc----cceE--EEEEee--CCCE
Confidence 8877766 999999999999999999999999999999977 6666666 442 2366 666665 3467
Q ss_pred EEEeCCCcEEEEeec
Q 001295 1056 ALGLSDGGVHVFEPL 1070 (1106)
Q Consensus 1056 ~t~~~Dg~v~vW~~~ 1070 (1106)
++|++||.|+||-.+
T Consensus 274 vvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 274 VVGGSDGRVRVFTVD 288 (745)
T ss_pred EEeccCceEEEEEec
Confidence 788889999999987
No 118
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.6e-22 Score=222.99 Aligned_cols=516 Identities=14% Similarity=0.181 Sum_probs=322.6
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCc-eEEEEecCCCcEEEEeCCCCcee
Q 001295 416 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ-LCVITCGDDKTIKVWDATNGAKQ 494 (1106)
Q Consensus 416 ~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~-~~l~s~~~d~~i~iwd~~~~~~~ 494 (1106)
..-.||+|+++++.+. +..|.||...+|+++. .+.+|..++..+.+.|.... .++++++.||.|++||...+..+
T Consensus 20 ~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Ll 95 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCT-GNFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELL 95 (792)
T ss_pred cccccccCCcEEEEee-CCEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEE
Confidence 3456999999998775 5669999999999887 68899999999999987763 47889999999999999999999
Q ss_pred EEEeccCCCeEEEecccc-CCceEEE-EEecCCeE-EEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeE
Q 001295 495 YIFEGHEAPVYSVCPHHK-ENIQFIF-STALDGKI-KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 571 (1106)
Q Consensus 495 ~~~~~h~~~v~~~~~~~~-~~~~~l~-s~~~dg~i-~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~ 571 (1106)
.++..+. ++.++.+.+. .+...++ .+..|..+ .....+..+....+ .-..+..-.......+. .-.+
T Consensus 96 kt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~-------~~~t~~~~~~d~~~~~~--~~~~ 165 (792)
T KOG1963|consen 96 KTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRF-------VLATFDSAKGDFLKEHQ--EPKS 165 (792)
T ss_pred EEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeee-------Eeeeccccchhhhhhhc--CCcc
Confidence 9887543 3333322110 0001111 11111111 10000100000000 00000000000000000 1234
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCcceeEEE---ccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhh
Q 001295 572 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI---DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT 648 (1106)
Q Consensus 572 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 648 (1106)
+.+++.+.+.... .+..+.+|+..++. .... ....|...+++.+++|+++++++|..||.|.+|.--..
T Consensus 166 I~~~~~ge~~~i~-~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~------ 237 (792)
T KOG1963|consen 166 IVDNNSGEFKGIV-HMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS------ 237 (792)
T ss_pred EEEcCCceEEEEE-EeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc------
Confidence 5556666544444 45578889887755 1111 11123334789999999999999999999999953220
Q ss_pred hcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCC
Q 001295 649 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSE 728 (1106)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~ 728 (1106)
.+.. ...++.=|
T Consensus 238 -~~~~------------------------------------------------------------~t~t~lHW------- 249 (792)
T KOG1963|consen 238 -SDDS------------------------------------------------------------ETCTLLHW------- 249 (792)
T ss_pred -cccc------------------------------------------------------------ccceEEEe-------
Confidence 0000 00111112
Q ss_pred CccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCC
Q 001295 729 PNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN 808 (1106)
Q Consensus 729 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 808 (1106)
|...|.+++|+++|.+|++||..+.+.+|.+.++ . ...++.
T Consensus 250 -------------H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~----------------------~--kqfLPR-- 290 (792)
T KOG1963|consen 250 -------------HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG----------------------K--KQFLPR-- 290 (792)
T ss_pred -------------cccccceeEEecCCceEeecccceEEEEEeecCC----------------------C--cccccc--
Confidence 6788999999999999999999999999987642 2 111222
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCC-----------CCCeeEEEEecCCCceEEEeeCCCcE
Q 001295 809 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP-----------PPAATFLAFHPQDNNIIAIGMDDSSI 876 (1106)
Q Consensus 809 ~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~-----------~~~v~~l~~s~~d~~~la~g~~dg~v 876 (1106)
..++|..+.+|||+.+.+... |+.|.+..+.+.....++.+. .+-.+.++++| ..+.++..+..|.|
T Consensus 291 Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~v 369 (792)
T KOG1963|consen 291 LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHV 369 (792)
T ss_pred cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceE
Confidence 688999999999999888776 999999988766555544332 23357788998 67778888899999
Q ss_pred EEEEeecceEEEEec-----------CcccCeeEEEEecCCCEEEEEc--------CCC--cEEEEeCCCcccccceeec
Q 001295 877 QIYNVRVDEVKSKLK-----------GHSKRITGLAFSHALNVLVSSG--------ADS--QLCVWSSDGWEKQKNRFLQ 935 (1106)
Q Consensus 877 ~iwd~~~~~~~~~l~-----------~h~~~V~~l~~s~d~~~l~s~s--------~Dg--~i~vwd~~~~~~~~~~~~~ 935 (1106)
.+||+.+.+.+..++ .+.-.|++++.+-.|.++++.- .|| .+++|-.....+.......
T Consensus 370 Q~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~ 449 (792)
T KOG1963|consen 370 QFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTK 449 (792)
T ss_pred EEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEE
Confidence 999998877665542 1334578888888899999863 233 4789987664433322222
Q ss_pred ccCCCCCCCCCCceEEEcCCCc-EEEE-EeCCeEEEEecCCceEe--------eecccCCCCCCeeEEEECCCCCEEEEE
Q 001295 936 IPTGRTPTAQSDTRVQFHQDQI-HFLV-VHETQLAIFETTKLECV--------KQWVPRESSAPITHATFSCDSQLVYAC 1005 (1106)
Q Consensus 936 ~~~~~~~~~~~i~~~~~s~dg~-~l~~-~~d~~v~i~d~~~~~~~--------~~~~~~~h~~~v~~l~~s~d~~~l~t~ 1005 (1106)
+...|.. ..+..+.+++... ..++ +.|+.+++|-....+-+ ......-|..++++++|+.||..|+.+
T Consensus 450 I~~PH~~--~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s 527 (792)
T KOG1963|consen 450 INNPHGN--AFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVS 527 (792)
T ss_pred EecCCCc--eeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEe
Confidence 2223322 2233333333333 4555 69999999988432211 111112368999999999999777655
Q ss_pred EcCCeEEEEEcCC-ceeEEeeCCCcccCCCCCCCCccceEEEEe---CCCCCEEEEEeCCCcEEEEeecCCCCcc
Q 001295 1006 FLDATVCVFSAAN-LKLRCRINPSAYLPAGVSSSNVHPLVIAAH---PQEPNEFALGLSDGGVHVFEPLESEGKW 1076 (1106)
Q Consensus 1006 s~Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~d~~~l~t~~~Dg~v~vW~~~~~~~~~ 1076 (1106)
.|++|.+||..+ .++.+... ....+.+ .+.|. +.+ ..+.....+.+.+|++.+..-.|
T Consensus 528 -~~~~Itiwd~~~~~~l~~~~~-~~~~~~~---------~~~~~~~~~~~--~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 528 -FDDTITIWDYDTKNELLCTEG-SRNWPIA---------ELLFTAQTQND--GALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred -cCCEEEEecCCChhhhhcccc-ccccchH---------hHhhhcccccc--cceeeccCceEehHhhhhhheec
Confidence 689999999998 55554443 2222222 12222 212 23334457889999999888666
No 119
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.1e-23 Score=200.74 Aligned_cols=269 Identities=16% Similarity=0.259 Sum_probs=206.5
Q ss_pred EEEEeCCCeEEEEEccCCc---------eeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEE
Q 001295 427 FGVAYSRHIVQIYSYHGGD---------EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 497 (1106)
Q Consensus 427 las~~~d~~v~iwd~~~~~---------~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 497 (1106)
|++|+....|.=+++.-.. .+.+.+.+..|.+.|++++.+ +. ++||||.|-+|+|||+++...+..+
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~--~~aSGssDetI~IYDm~k~~qlg~l 79 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GP--YVASGSSDETIHIYDMRKRKQLGIL 79 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ce--eEeccCCCCcEEEEeccchhhhcce
Confidence 4555555555555443211 123456688999999999985 66 8999999999999999999999999
Q ss_pred eccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCC
Q 001295 498 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 577 (1106)
Q Consensus 498 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~ 577 (1106)
-.|.+.|+++.|.+......|++|+.||.|.+|+...-.....+..|.+.|+.++.+|.++
T Consensus 80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~K------------------- 140 (362)
T KOG0294|consen 80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGK------------------- 140 (362)
T ss_pred eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCc-------------------
Confidence 9999999999998766555899999999999999998888888888888777777776665
Q ss_pred CCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccc
Q 001295 578 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS 657 (1106)
Q Consensus 578 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 657 (1106)
.-++.+.|+.+++||+-.|+.-..+..... -..+.|+|.|.+++.+..+ .|-+|.+.+. ..+..+.
T Consensus 141 --LALsVg~D~~lr~WNLV~Gr~a~v~~L~~~---at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A-~v~~~i~------- 206 (362)
T KOG0294|consen 141 --LALSVGGDQVLRTWNLVRGRVAFVLNLKNK---ATLVSWSPQGDHFVVSGRN-KIDIYQLDNA-SVFREIE------- 206 (362)
T ss_pred --eEEEEcCCceeeeehhhcCccceeeccCCc---ceeeEEcCCCCEEEEEecc-EEEEEecccH-hHhhhhh-------
Confidence 677889999999999999887766654332 3459999999988888774 6778876554 2222111
Q ss_pred cCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceeccc
Q 001295 658 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL 737 (1106)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~ 737 (1106)
T Consensus 207 -------------------------------------------------------------------------------- 206 (362)
T KOG0294|consen 207 -------------------------------------------------------------------------------- 206 (362)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEE
Q 001295 738 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 817 (1106)
Q Consensus 738 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~ 817 (1106)
....+.|+.
T Consensus 207 -----------------------------------------------------------------------~~~r~l~~~ 215 (362)
T KOG0294|consen 207 -----------------------------------------------------------------------NPKRILCAT 215 (362)
T ss_pred -----------------------------------------------------------------------ccccceeee
Confidence 111223333
Q ss_pred EecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEe-cCCCceEEEeeCCCcEEEEEeecc
Q 001295 818 LSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFH-PQDNNIIAIGMDDSSIQIYNVRVD 884 (1106)
Q Consensus 818 ~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s-~~d~~~la~g~~dg~v~iwd~~~~ 884 (1106)
|. ++..|++|. |+.|++||..+..+...+.+|...|..+.+- ..++.+|++++.||.|+|||+...
T Consensus 216 ~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 216 FL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 33 344566665 7889999999989999999999999999843 226789999999999999999865
No 120
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=1.5e-23 Score=236.22 Aligned_cols=241 Identities=14% Similarity=0.180 Sum_probs=175.0
Q ss_pred eeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCC
Q 001295 345 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 424 (1106)
Q Consensus 345 ~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 424 (1106)
...+|.+.|.+++|+|+...+||+|+.||+|+|||+.++...... + ......+.+|...|.+++|+|++
T Consensus 69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~-i----------~~p~~~L~gH~~~V~sVaf~P~g 137 (568)
T PTZ00420 69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE-I----------KDPQCILKGHKKKISIIDWNPMN 137 (568)
T ss_pred EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc-c----------ccceEEeecCCCcEEEEEECCCC
Confidence 344599999999999974336999999999999999865321100 0 00111367899999999999998
Q ss_pred CE-EEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCC
Q 001295 425 SL-FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 503 (1106)
Q Consensus 425 ~~-las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 503 (1106)
.. |++++.|++|+|||+.+++.+. .+. |...|.+++|+|+|. +|++++.|+.|+|||+++++.+.++.+|.+.
T Consensus 138 ~~iLaSgS~DgtIrIWDl~tg~~~~---~i~-~~~~V~SlswspdG~--lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~ 211 (568)
T PTZ00420 138 YYIMCSSGFDSFVNIWDIENEKRAF---QIN-MPKKLSSLKWNIKGN--LLSGTCVGKHMHIIDPRKQEIASSFHIHDGG 211 (568)
T ss_pred CeEEEEEeCCCeEEEEECCCCcEEE---EEe-cCCcEEEEEECCCCC--EEEEEecCCEEEEEECCCCcEEEEEecccCC
Confidence 76 4789999999999999987554 343 567899999999999 8899999999999999999999999999987
Q ss_pred eEEEeccc---cCCceEEEEEecCC----eEEEEeCCCCCc-eeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEc
Q 001295 504 VYSVCPHH---KENIQFIFSTALDG----KIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 575 (1106)
Q Consensus 504 v~~~~~~~---~~~~~~l~s~~~dg----~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~ 575 (1106)
+.+.++.. .+++.+|++++.|+ .|++||++.... +.....+.. .. .+......
T Consensus 212 ~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~-~~------------------~L~p~~D~ 272 (568)
T PTZ00420 212 KNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNA-SA------------------PLIPHYDE 272 (568)
T ss_pred ceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCC-cc------------------ceEEeeeC
Confidence 65544322 24557888888774 799999996433 222221111 11 11111123
Q ss_pred CCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCC
Q 001295 576 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG 622 (1106)
Q Consensus 576 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 622 (1106)
+++.++++|+.|+.|++|++..+. +..+.......++.+++|.|+.
T Consensus 273 ~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 273 STGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 345678899999999999998764 4444443344567889999964
No 121
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.6e-24 Score=206.24 Aligned_cols=328 Identities=14% Similarity=0.235 Sum_probs=246.3
Q ss_pred EEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCC
Q 001295 581 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTS 660 (1106)
Q Consensus 581 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 660 (1106)
+++.-.++++. .++++.+.+| .+.|..++.......+.+++.|.+-+||.++++ .++..+.
T Consensus 127 ivssFk~~t~~------~~lvre~~GH--kDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg-~CL~~Y~---------- 187 (481)
T KOG0300|consen 127 IVSSFKDGTVK------FRLVRELEGH--KDGIWHVAADSTQPICGTASADHTARIWSLESG-ACLATYT---------- 187 (481)
T ss_pred heeeecCCcee------Eeehhhhccc--ccceeeehhhcCCcceeecccccceeEEeeccc-cceeeec----------
Confidence 55555555532 2344555555 557888888887788999999999999999988 4444332
Q ss_pred CCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCcc
Q 001295 661 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 740 (1106)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 740 (1106)
T Consensus 188 -------------------------------------------------------------------------------- 187 (481)
T KOG0300|consen 188 -------------------------------------------------------------------------------- 187 (481)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceEEEEEcCCCceEEEeecCceEEEeecccc----ccCCCCc-----cccccCccccCCC-----CCC---ccccc
Q 001295 741 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRT----ERNSSGK-----ATASVAPQLWQPP-----SGI---MMTND 803 (1106)
Q Consensus 741 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~-----~~~~~~~~~w~~~-----~~~---~~~~~ 803 (1106)
+|.+.|.++.|++.+..+++++.|++..||...-+ +...+.. ......-..-|.. .|. .....
T Consensus 188 GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ 267 (481)
T KOG0300|consen 188 GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMR 267 (481)
T ss_pred ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeee
Confidence 37788999999999999999999999999983321 1000000 0000000000110 111 11222
Q ss_pred cCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEee
Q 001295 804 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 882 (1106)
Q Consensus 804 ~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~ 882 (1106)
+.+ |...|.+..|-..|+.+++++ |.+-.+||++++..+..+.+|..+.+.++-+| ..+++++.+.|.+.++||+.
T Consensus 268 ltg--H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFR 344 (481)
T KOG0300|consen 268 LTG--HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFR 344 (481)
T ss_pred eec--cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccch
Confidence 444 899999999999999999999 99999999999999999999999999999999 89999999999999999998
Q ss_pred cc-eEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE
Q 001295 883 VD-EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 961 (1106)
Q Consensus 883 ~~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 961 (1106)
.. ..+..|+||.+.|+++.|..| ..++||++|.+|+|||+.+..... .... ...++..++.+..+..++.
T Consensus 345 eaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRspl----ATIR----tdS~~NRvavs~g~~iIAi 415 (481)
T KOG0300|consen 345 EAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPL----ATIR----TDSPANRVAVSKGHPIIAI 415 (481)
T ss_pred hhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcc----eeee----cCCccceeEeecCCceEEe
Confidence 53 457889999999999999866 578999999999999999854322 1111 1146788999999999998
Q ss_pred E-eCCeEEEEecCCceEeeec--ccCCCCCCeeEEEECCCCCE--EEEEEcCCeEEEEEcCCc
Q 001295 962 V-HETQLAIFETTKLECVKQW--VPRESSAPITHATFSCDSQL--VYACFLDATVCVFSAANL 1019 (1106)
Q Consensus 962 ~-~d~~v~i~d~~~~~~~~~~--~~~~h~~~v~~l~~s~d~~~--l~t~s~Dg~i~vwd~~~~ 1019 (1106)
- .+..|++||+...+..+.- .-.+|..-|+|.+|+.+.-. |++++.|..+.=|.+.+-
T Consensus 416 PhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 416 PHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 5 6678999999876654433 23588999999999876543 888999999999998754
No 122
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.2e-24 Score=200.93 Aligned_cols=257 Identities=19% Similarity=0.242 Sum_probs=206.0
Q ss_pred cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc--CCC
Q 001295 348 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGS 425 (1106)
Q Consensus 348 ~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~ 425 (1106)
.|.+.|..+...--|++ |||++.|++|+|+.+.++..... ...|.||+++|+.++|-. -|.
T Consensus 9 ~H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~l----------------l~~L~Gh~GPVwqv~wahPk~G~ 71 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSKL----------------LAELTGHSGPVWKVAWAHPKFGT 71 (299)
T ss_pred hhhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCcee----------------eeEecCCCCCeeEEeecccccCc
Confidence 38999999999999996 99999999999999987653111 114899999999999987 899
Q ss_pred EEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC-c--eeEEEeccCC
Q 001295 426 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-A--KQYIFEGHEA 502 (1106)
Q Consensus 426 ~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~--~~~~~~~h~~ 502 (1106)
+||+++.||.|.||.-.+|+ ..+......|...|++++|.|.+--+.|++++.||.|.|.+.++. . .......|.-
T Consensus 72 iLAScsYDgkVIiWke~~g~-w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~ 150 (299)
T KOG1332|consen 72 ILASCSYDGKVIIWKEENGR-WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI 150 (299)
T ss_pred EeeEeecCceEEEEecCCCc-hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc
Confidence 99999999999999999884 445557789999999999999988889999999999999988754 1 2345667999
Q ss_pred CeEEEeccccCC-c-----------eEEEEEecCCeEEEEeCCCCCc--eeEeeCCCCeeEEEEEecCCCeEEEeeeccc
Q 001295 503 PVYSVCPHHKEN-I-----------QFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 568 (1106)
Q Consensus 503 ~v~~~~~~~~~~-~-----------~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~ 568 (1106)
.|++++|.|..- | ..|++|+.|..|++|+.++..- ...+..|.+.|..++|.|.-..
T Consensus 151 GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl--------- 221 (299)
T KOG1332|consen 151 GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGL--------- 221 (299)
T ss_pred ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCC---------
Confidence 999999987621 1 5699999999999999987532 2357889999999999886431
Q ss_pred eeEEEEcCCCCEEEEEECCCeEEEEECCCc--ceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEcc
Q 001295 569 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSV--QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 640 (1106)
Q Consensus 569 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 640 (1106)
...++++++.||+|.||..+.. .-..++ .+.-...+..++||..|+.|++++.|+.+.+|.-.
T Consensus 222 --------~~s~iAS~SqDg~viIwt~~~e~e~wk~tl-l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 222 --------PKSTIASCSQDGTVIIWTKDEEYEPWKKTL-LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred --------CceeeEEecCCCcEEEEEecCccCcccccc-cccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 1135999999999999987632 111111 11223468899999999999999999999999654
No 123
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=7.3e-24 Score=197.44 Aligned_cols=222 Identities=20% Similarity=0.278 Sum_probs=178.6
Q ss_pred ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcC--CCCceEEEEecCCCcEE
Q 001295 407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIK 484 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~--d~~~~~l~s~~~d~~i~ 484 (1106)
+...|++.|..+...--|++||+++.|++|+|+.+..+.....+.+|.||.++|..++|.. .|. +|++++.||.|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI 83 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence 4578999999998888999999999999999999998776677779999999999999987 677 899999999999
Q ss_pred EEeCCCCc--eeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCc---eeEeeCCCCeeEEEEEecC---
Q 001295 485 VWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS---RVDYEAPGRWCTTMAYSAD--- 556 (1106)
Q Consensus 485 iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~--- 556 (1106)
||.-+.|+ ..+....|...|++++|.|..-|-.|++++.||.|.+.+++.... ......|.-.|++++|.|.
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 99977764 345677899999999999999999999999999999999887522 2244567778899999886
Q ss_pred CCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCC----CEEEEEeCCC
Q 001295 557 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG----CLLAVSTNDN 632 (1106)
Q Consensus 557 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~----~~l~~~~~dg 632 (1106)
|..+-.+... .-..|++|+.|+.|+||+..+++-+..-...+|.+.|+.++|.|.- .+|++++.||
T Consensus 164 g~~~~~~~~~----------~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg 233 (299)
T KOG1332|consen 164 GSLVDQGPAA----------KVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG 233 (299)
T ss_pred ccccccCccc----------ccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCC
Confidence 3211110000 0136999999999999999886433222233457799999999953 6899999999
Q ss_pred cEEEEEcc
Q 001295 633 GIKILATS 640 (1106)
Q Consensus 633 ~i~iwd~~ 640 (1106)
++.||-..
T Consensus 234 ~viIwt~~ 241 (299)
T KOG1332|consen 234 TVIIWTKD 241 (299)
T ss_pred cEEEEEec
Confidence 99999765
No 124
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.8e-22 Score=194.13 Aligned_cols=240 Identities=19% Similarity=0.197 Sum_probs=186.6
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 428 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 428 (1106)
-.+.|..|.|+|.+.. |++++-||++++||+...+... .-.|+.++.+++|.+ ...++
T Consensus 12 P~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~ 69 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIV 69 (323)
T ss_pred ChhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEE
Confidence 4689999999999987 5555789999999998774432 356888999999987 55788
Q ss_pred EEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEe
Q 001295 429 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 508 (1106)
Q Consensus 429 s~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 508 (1106)
+|+.||.|+.+|+.++.... +..|..+|.||.+++... .+++||.|++|++||.+.......+. ....|.++.
T Consensus 70 ~G~~dg~vr~~Dln~~~~~~----igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~ 142 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNEDQ----IGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMD 142 (323)
T ss_pred EeccCceEEEEEecCCccee----eccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEe
Confidence 99999999999999987654 778999999999998777 79999999999999998766665655 344888886
Q ss_pred ccccCCceEEEEEecCCeEEEEeCCCCCceeEeeC--CCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEEC
Q 001295 509 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 586 (1106)
Q Consensus 509 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 586 (1106)
. .++.|+.|+.|..+.+||+++......... -...+ .++++-|++.-+++++-
T Consensus 143 v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqt---------------------R~v~~~pn~eGy~~sSi 197 (323)
T KOG1036|consen 143 V----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQT---------------------RCVALVPNGEGYVVSSI 197 (323)
T ss_pred c----cCCEEEEeecCceEEEEEcccccchhhhccccceeEE---------------------EEEEEecCCCceEEEee
Confidence 4 336799999999999999998765542211 11233 44444555556889999
Q ss_pred CCeEEEEECCCc----ceeEEEccCCC-------CCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 587 DFSIKFWDMDSV----QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 587 d~~i~iwd~~~~----~~~~~~~~~~~-------~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
||.|.+=.++.. +....|+.|.. .-+|++++|+|--..|++|+.||.|.+||..+.
T Consensus 198 eGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 198 EGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred cceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch
Confidence 999988766655 33344444421 136889999999899999999999999999776
No 125
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.6e-22 Score=223.02 Aligned_cols=251 Identities=17% Similarity=0.196 Sum_probs=204.0
Q ss_pred ccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEec
Q 001295 741 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 820 (1106)
Q Consensus 741 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 820 (1106)
+|....+.++|.|+|..|++++.||.|++|+...... . +..+. .+...|.+++..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e------------------~--P~ti~----~~g~~v~~ia~~- 65 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE------------------E--PETID----ISGELVSSIACY- 65 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc------------------C--Cchhh----ccCceeEEEeec-
Confidence 4788899999999999999999999999998653211 0 11110 056667777764
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeE
Q 001295 821 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 899 (1106)
Q Consensus 821 ~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 899 (1106)
+.++++++ +++|.+|.+.++..-..+....-++++++|+. +|+++|.|++|-.|++-++.+......+++|.++|.+
T Consensus 66 -s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 66 -SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred -ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceee
Confidence 44888888 89999999988776555555567899999999 9999999999999999999999999999999999999
Q ss_pred EEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCceEe
Q 001295 900 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECV 978 (1106)
Q Consensus 900 l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~~~ 978 (1106)
|.|+|.+.+||+.+.||+|++|++.++....................+..++|+|+|..+++ +.|+.|.+|+..+.+..
T Consensus 144 l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~ 223 (933)
T KOG1274|consen 144 LSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ 223 (933)
T ss_pred eeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh
Confidence 99999999999999999999999998765332211111111111234577899999555555 89999999999999998
Q ss_pred eecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001295 979 KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus 979 ~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
..+..+.|...+.++.|||+|+|||+++.||.|.|||+++
T Consensus 224 f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 224 FKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred eeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 8888777777799999999999999999999999999997
No 126
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=3.7e-23 Score=211.44 Aligned_cols=282 Identities=12% Similarity=0.175 Sum_probs=223.7
Q ss_pred cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295 742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 821 (1106)
Q Consensus 742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 821 (1106)
|..-|..++++...+.+.+++ .|.|+|||+........ +. .+.-....+.|.++.+.||
T Consensus 418 HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~P-------------------vs-qLdcl~rdnyiRSckL~pd 476 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSP-------------------VS-QLDCLNRDNYIRSCKLLPD 476 (705)
T ss_pred cCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCc-------------------cc-cccccCcccceeeeEecCC
Confidence 778888899999888777665 46899999874311110 00 0111225778999999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCcee--eeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCee
Q 001295 822 DSYVMSAS-GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 898 (1106)
Q Consensus 822 ~~~l~~~s-dg~i~vwd~~~~~~~--~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 898 (1106)
|+.|++|+ -.++.|||+...... ..+........+++.+| |.++.++++.||.|.|||+.+..+++.|+||.+.+.
T Consensus 477 grtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGas 555 (705)
T KOG0639|consen 477 GRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS 555 (705)
T ss_pred CceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCce
Confidence 99999999 688999999865433 33444445688899999 999999999999999999999999999999999999
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceE
Q 001295 899 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC 977 (1106)
Q Consensus 899 ~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~ 977 (1106)
||.+++||..|-+|+-|.+||-||+..+++... .. ....|.++-++|.+.+|+++ ..+.+.|......+.
T Consensus 556 cIdis~dGtklWTGGlDntvRcWDlregrqlqq-----hd----F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k 626 (705)
T KOG0639|consen 556 CIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ-----HD----FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK 626 (705)
T ss_pred eEEecCCCceeecCCCccceeehhhhhhhhhhh-----hh----hhhhheecccCCCccceeeecccCcEEEEecCCccc
Confidence 999999999999999999999999998764321 11 12478999999999999997 567788877665443
Q ss_pred eeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEE
Q 001295 978 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1057 (1106)
Q Consensus 978 ~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t 1057 (1106)
. ...-|.+.|.++.|++.|+++++.+.|..+-.|...-|..+.+.+ +...|. ++..+. |.+++||
T Consensus 627 y---qlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk---------E~SsVl--sCDIS~-ddkyIVT 691 (705)
T KOG0639|consen 627 Y---QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---------ESSSVL--SCDISF-DDKYIVT 691 (705)
T ss_pred e---eecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc---------ccCcce--eeeecc-CceEEEe
Confidence 2 224689999999999999999999999999999999998886655 122244 555555 6799999
Q ss_pred EeCCCcEEEEee
Q 001295 1058 GLSDGGVHVFEP 1069 (1106)
Q Consensus 1058 ~~~Dg~v~vW~~ 1069 (1106)
|+.|....|+.+
T Consensus 692 GSGdkkATVYeV 703 (705)
T KOG0639|consen 692 GSGDKKATVYEV 703 (705)
T ss_pred cCCCcceEEEEE
Confidence 999998888876
No 127
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.2e-22 Score=207.30 Aligned_cols=215 Identities=16% Similarity=0.152 Sum_probs=176.0
Q ss_pred CcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCC--
Q 001295 412 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-- 489 (1106)
Q Consensus 412 ~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-- 489 (1106)
.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+. .+.+|-..|+|+.|+.||. +|+|||.||.|.+|++.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEee
Confidence 3479999999999999999899999999999999876 5789999999999999999 89999999999999763
Q ss_pred -------CCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEE
Q 001295 490 -------NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 562 (1106)
Q Consensus 490 -------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~ 562 (1106)
+-++++.|..|+-+|+++...+.+...+++|+|.|.++++||+..+..+..+..+ .
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~---------------- 218 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-S---------------- 218 (476)
T ss_pred cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC-C----------------
Confidence 3467889999999999999877655679999999999999999987655544332 2
Q ss_pred eeeccceeEEEEcCCCCEEEEEECCCeEEEEECCC----------------cceeEEEccCCCCCCcCeEEEccCCCEEE
Q 001295 563 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS----------------VQLLTSIDADGGLPASPRIRFNKDGCLLA 626 (1106)
Q Consensus 563 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~----------------~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 626 (1106)
.+.++.++|.+..+++|+++|.|.+.++.. +..+..+.+|.....|+|++++-||.+|+
T Consensus 219 -----si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 219 -----SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL 293 (476)
T ss_pred -----cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence 344555555555777788888777776532 23445566665555899999999999999
Q ss_pred EEeCCCcEEEEEccCCchhhhhhccccc
Q 001295 627 VSTNDNGIKILATSDGIRLLRTFENLAY 654 (1106)
Q Consensus 627 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 654 (1106)
+|+.||.++|||+.+. ++++.+.....
T Consensus 294 SGd~dg~VcvWdi~S~-Q~iRtl~~~kg 320 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIYSK-QCIRTLQTSKG 320 (476)
T ss_pred eeCCCCCEEEEecchH-HHHHHHhhhcc
Confidence 9999999999999887 78887764333
No 128
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=7.4e-20 Score=202.17 Aligned_cols=253 Identities=16% Similarity=0.238 Sum_probs=205.3
Q ss_pred cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEE
Q 001295 348 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 427 (1106)
Q Consensus 348 ~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 427 (1106)
.|+..-+.++|.|+|. .|.+++.||.|++|+...-+.... ++.-++..|.+++- ++.+|
T Consensus 11 aht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~------------------ti~~~g~~v~~ia~--~s~~f 69 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPE------------------TIDISGELVSSIAC--YSNHF 69 (933)
T ss_pred hccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCc------------------hhhccCceeEEEee--cccce
Confidence 4888899999999999 588889999999999866521110 12226777877776 45599
Q ss_pred EEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEE
Q 001295 428 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 507 (1106)
Q Consensus 428 as~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 507 (1106)
++|+.+++|.+|....++.-.. +....-++.+++|+.+|+ +++.||.|-.|++-++.+......+.+|.++|.++
T Consensus 70 ~~~s~~~tv~~y~fps~~~~~i---L~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l 144 (933)
T KOG1274|consen 70 LTGSEQNTVLRYKFPSGEEDTI---LARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQL 144 (933)
T ss_pred EEeeccceEEEeeCCCCCccce---eeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceeee
Confidence 9999999999999998765432 334567899999999999 89999999999999999999999999999999999
Q ss_pred eccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECC
Q 001295 508 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 587 (1106)
Q Consensus 508 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 587 (1106)
.++| ++++|++.+.||.|++||+.++.....+..-...-... ....+..++|+|++..++..+.|
T Consensus 145 ~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~-------------~s~i~~~~aW~Pk~g~la~~~~d 209 (933)
T KOG1274|consen 145 SYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFI-------------LSRICTRLAWHPKGGTLAVPPVD 209 (933)
T ss_pred eEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCcccccc-------------ccceeeeeeecCCCCeEEeeccC
Confidence 9865 45799999999999999999877665554322110000 01245567788887789999999
Q ss_pred CeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccC
Q 001295 588 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 641 (1106)
Q Consensus 588 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 641 (1106)
+.|.+|+..+.+....+........+.+++|+|+|+|||+++.+|.|.|||+.+
T Consensus 210 ~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 210 NTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred CeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 999999999999998887665555688999999999999999999999999986
No 129
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=3.4e-22 Score=191.10 Aligned_cols=238 Identities=16% Similarity=0.249 Sum_probs=178.2
Q ss_pred ccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc-CCC
Q 001295 347 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGS 425 (1106)
Q Consensus 347 ~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~ 425 (1106)
-.|.+.|+++.+.+..-+++++|+.||.|.|||++.........+ +-+ ..|. ....--.+|...|..+.|-| |..
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~k-~~c~--v~~~h~~~Hky~iss~~WyP~DtG 115 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IAK-HKCI--VAKQHENGHKYAISSAIWYPIDTG 115 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-eeh-eeee--ccccCCccceeeeeeeEEeeecCc
Confidence 349999999999996544699999999999999986542110000 000 0000 11112468999999999999 888
Q ss_pred EEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCC-ceEEEEecCCCcEEEEeCCCCceeEEEeccCCCe
Q 001295 426 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK-QLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 504 (1106)
Q Consensus 426 ~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 504 (1106)
++.+++-|.+++|||..+-+... .|+ -.+.|++-+|||-.. .-++++|..|-.|++-|+.+|.+-+++.||.+.|
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a~---~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~v 191 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEAV---DFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGV 191 (397)
T ss_pred eeecccccceEEEeecccceeeE---Eee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCce
Confidence 99999999999999999865443 232 456788888988643 3378888999999999999999999999999999
Q ss_pred EEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEE
Q 001295 505 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 584 (1106)
Q Consensus 505 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 584 (1106)
.++.|+|..+ -.|++|+.||.|++||++...
T Consensus 192 laV~Wsp~~e-~vLatgsaDg~irlWDiRras------------------------------------------------ 222 (397)
T KOG4283|consen 192 LAVEWSPSSE-WVLATGSADGAIRLWDIRRAS------------------------------------------------ 222 (397)
T ss_pred EEEEeccCce-eEEEecCCCceEEEEEeeccc------------------------------------------------
Confidence 9999998765 689999999999999998521
Q ss_pred ECCCeEEEEECCCcceeEEEc-cCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCch
Q 001295 585 GDDFSIKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 644 (1106)
Q Consensus 585 ~~d~~i~iwd~~~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 644 (1106)
|..++.|...++....++ ...+.+.|+.++|+.++.++++.+.|..+++|+..+|..
T Consensus 223 ---gcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 223 ---GCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred ---ceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence 223333333322222222 223456799999999999999999999999999988843
No 130
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.5e-20 Score=205.85 Aligned_cols=511 Identities=13% Similarity=0.145 Sum_probs=315.2
Q ss_pred EEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCC---CEEEEE
Q 001295 354 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG---SLFGVA 430 (1106)
Q Consensus 354 ~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg---~~las~ 430 (1106)
..-.||+|+++++.. .+..|.||...+|+++. .+.+|..++..+.+.|.. .++.++
T Consensus 20 ~~avfSnD~k~l~~~--~~~~V~VyS~~Tg~~i~-------------------~l~~~~a~l~s~~~~~~~~~~~~~~~~ 78 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLC--TGNFVKVYSTATGECIT-------------------SLEDHTAPLTSVIVLPSSENANYLIVC 78 (792)
T ss_pred cccccccCCcEEEEe--eCCEEEEEecchHhhhh-------------------hcccccCccceeeecCCCccceEEEEE
Confidence 345699999975553 45799999999999886 489999999999999844 477899
Q ss_pred eCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcC----CCCceEEEEecCCCcEEEEeCCCCceeE-----------
Q 001295 431 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH----PNKQLCVITCGDDKTIKVWDATNGAKQY----------- 495 (1106)
Q Consensus 431 ~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~----d~~~~~l~s~~~d~~i~iwd~~~~~~~~----------- 495 (1106)
+.||.|++||...++.++. +.. ..++..+.+.| .... +.++...-..+.-...+..+...
T Consensus 79 sl~G~I~vwd~~~~~Llkt---~~~-~~~v~~~~~~~~~a~~s~~-~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~ 153 (792)
T KOG1963|consen 79 SLDGTIRVWDWSDGELLKT---FDN-NLPVHALVYKPAQADISAN-VYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAK 153 (792)
T ss_pred ecCccEEEecCCCcEEEEE---Eec-CCceeEEEechhHhCccce-eEeecccceeeeecccccccceeeeEeeeccccc
Confidence 9999999999999887763 322 22344443322 1110 11222111111111111111111
Q ss_pred --EEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEE
Q 001295 496 --IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 573 (1106)
Q Consensus 496 --~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 573 (1106)
.+.+|.. -.++...+.. .+.....+..+.+|+..... .....+ .... ++.-.+.+.+
T Consensus 154 ~d~~~~~~~-~~~I~~~~~g---e~~~i~~~~~~~~~~v~~~~--~~~~~~--------------~~~~-~Htf~~t~~~ 212 (792)
T KOG1963|consen 154 GDFLKEHQE-PKSIVDNNSG---EFKGIVHMCKIHIYFVPKHT--KHTSSR--------------DITV-HHTFNITCVA 212 (792)
T ss_pred hhhhhhhcC-CccEEEcCCc---eEEEEEEeeeEEEEEecccc--eeeccc--------------hhhh-hhcccceeEE
Confidence 1122322 2334433332 34444456678888776543 111000 0001 1111367788
Q ss_pred EcCCCCEEEEEECCCeEEEEECCC--cceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcc
Q 001295 574 FDTTKNRFLAAGDDFSIKFWDMDS--VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 651 (1106)
Q Consensus 574 ~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 651 (1106)
++|++++++++..||.|.+|.--. +.....-..|.|...|.+++|+++|.+|++|+..|.+.+|.+.++++. +.
T Consensus 213 ~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq---fL- 288 (792)
T KOG1963|consen 213 LSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ---FL- 288 (792)
T ss_pred eccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcc---cc-
Confidence 888888999999999999997433 222222223455668999999999999999999999999999887321 10
Q ss_pred cccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCcc
Q 001295 652 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 731 (1106)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~ 731 (1106)
T Consensus 289 -------------------------------------------------------------------------------- 288 (792)
T KOG1963|consen 289 -------------------------------------------------------------------------------- 288 (792)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCC
Q 001295 732 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE 811 (1106)
Q Consensus 732 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 811 (1106)
| .-...|..+.++||+...+....|..|.+-....-.... .+.-..+.+.... ....+
T Consensus 289 ------P--RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~--------tIsgi~~~~~~~k------~~~~~ 346 (792)
T KOG1963|consen 289 ------P--RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKS--------TISGIKPPTPSTK------TRPQS 346 (792)
T ss_pred ------c--ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhh--------hccCccCCCcccc------ccccc
Confidence 0 034678999999999999999999999887653211100 0000000000000 01345
Q ss_pred CeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeec-----CCC------CCeeEEEEecCCCceEEEee--------
Q 001295 812 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM-----PPP------PAATFLAFHPQDNNIIAIGM-------- 871 (1106)
Q Consensus 812 ~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~-----~~~------~~v~~l~~s~~d~~~la~g~-------- 871 (1106)
-.+.++++|--+.++-.. .|.|.+||+-+.+.+..+. .+. -.+++++.+. .|.+++++-
T Consensus 347 l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~-~gs~maT~E~~~d~~~~ 425 (792)
T KOG1963|consen 347 LTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR-FGSWMATLEARIDKFNF 425 (792)
T ss_pred cceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhc-cceEEEEeeeeehhhhc
Confidence 567788999444444444 8999999998776665542 122 2478888888 688998864
Q ss_pred CCC--cEEEEEeecc----eEEEE-ecCcccCeeEEEEecC-C-CEEEEEcCCCcEEEEeCCCccc-----ccceeeccc
Q 001295 872 DDS--SIQIYNVRVD----EVKSK-LKGHSKRITGLAFSHA-L-NVLVSSGADSQLCVWSSDGWEK-----QKNRFLQIP 937 (1106)
Q Consensus 872 ~dg--~v~iwd~~~~----~~~~~-l~~h~~~V~~l~~s~d-~-~~l~s~s~Dg~i~vwd~~~~~~-----~~~~~~~~~ 937 (1106)
.|| .+++|-.... .+... -..|...+...+|.+. . ..+++++.||.++||.+...+. ..+.+..+.
T Consensus 426 ~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~ 505 (792)
T KOG1963|consen 426 FDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIG 505 (792)
T ss_pred cCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeee
Confidence 333 5678876543 22222 2458887777777543 2 3799999999999998843221 112333333
Q ss_pred CCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCc-eEeeecccCCCCCCeeEEEECCCC--CEEEEEEcCCeEEEE
Q 001295 938 TGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL-ECVKQWVPRESSAPITHATFSCDS--QLVYACFLDATVCVF 1014 (1106)
Q Consensus 938 ~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~-~~~~~~~~~~h~~~v~~l~~s~d~--~~l~t~s~Dg~i~vw 1014 (1106)
.-|. ..+..++|+.||..|+++.++.|.+||..+. ....... .-..++..+++.... ...+.....+.+.+|
T Consensus 506 sy~k---~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~W 580 (792)
T KOG1963|consen 506 SYHK---TPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEG--SRNWPIAELLFTAQTQNDGALVHATQQRLSVW 580 (792)
T ss_pred cccc---CcccchhhcCCCcEEEEecCCEEEEecCCChhhhhcccc--ccccchHhHhhhcccccccceeeccCceEehH
Confidence 2233 4789999999999999999999999999883 2222211 113344444443311 122333457889999
Q ss_pred EcCCceeEE
Q 001295 1015 SAANLKLRC 1023 (1106)
Q Consensus 1015 d~~~~~~~~ 1023 (1106)
++-++.+..
T Consensus 581 Nll~~~l~w 589 (792)
T KOG1963|consen 581 NLLSMSLIW 589 (792)
T ss_pred hhhhhheec
Confidence 998887766
No 131
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=4.6e-21 Score=210.50 Aligned_cols=205 Identities=18% Similarity=0.214 Sum_probs=149.6
Q ss_pred EEEEecCCCEEEEE-e-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCC-cEEEEEeecceEEEEec
Q 001295 815 CFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-SIQIYNVRVDEVKSKLK 891 (1106)
Q Consensus 815 ~l~~s~~~~~l~~~-s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg-~v~iwd~~~~~~~~~l~ 891 (1106)
.++++|+++.++++ . ++.|++||+.+.+.+..+.. ...+.+++|+| ++++++++..++ .+.+||..+++....+.
T Consensus 77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (300)
T TIGR03866 77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVL 154 (300)
T ss_pred EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Confidence 45677777766544 3 67888888888776666653 23468899999 888998888775 56788998887766543
Q ss_pred CcccCeeEEEEecCCCEEEEE-cCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE--EeCCeEE
Q 001295 892 GHSKRITGLAFSHALNVLVSS-GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLA 968 (1106)
Q Consensus 892 ~h~~~V~~l~~s~d~~~l~s~-s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~--~~d~~v~ 968 (1106)
. ...+.+++|+||+++|+.+ ..++.|++||+.+++.......... +..........++|+|+++++++ +.++.+.
T Consensus 155 ~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~ 232 (300)
T TIGR03866 155 V-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIP-GVHPEAVQPVGIKLTKDGKTAFVALGPANRVA 232 (300)
T ss_pred c-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccc-ccccccCCccceEECCCCCEEEEEcCCCCeEE
Confidence 2 2346789999999988544 5699999999998754322111111 10011123457899999998655 4567899
Q ss_pred EEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCceeEEeeC
Q 001295 969 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus 969 i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s-~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
+||+.+++.+..+. +...+.+++|+|+|++|++++ .+++|++||+.+++.+.++.
T Consensus 233 v~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 233 VVDAKTYEVLDYLL---VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EEECCCCcEEEEEE---eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 99999988876553 245799999999999998764 68999999999999998887
No 132
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.5e-22 Score=206.74 Aligned_cols=296 Identities=16% Similarity=0.260 Sum_probs=216.1
Q ss_pred EecCC-CcEEEEeCCCCceeEEEecc-CCCeEEEeccccCCceEEEEEec-CCeEEEEeCCCCCceeEeeCCCCeeEEEE
Q 001295 476 TCGDD-KTIKVWDATNGAKQYIFEGH-EAPVYSVCPHHKENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAPGRWCTTMA 552 (1106)
Q Consensus 476 s~~~d-~~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 552 (1106)
+++.| .++.+||+++|....++++- ...-.++... ++.+++++.. ...|.+|.+.............+
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l---~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg------ 82 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL---NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPG------ 82 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh---chhheeeecccCccccccccCchhhhhhhccccc------
Confidence 34444 45999999999999988865 2222222211 1135555544 55788998875444332222233
Q ss_pred EecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCC
Q 001295 553 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 632 (1106)
Q Consensus 553 ~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 632 (1106)
++.++.-+|.|.+++.|+..|.|++|.+.+|.++..+..| ...|+|+.|+.||.+|++|+.||
T Consensus 83 ---------------~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aH--YQ~ITcL~fs~dgs~iiTgskDg 145 (476)
T KOG0646|consen 83 ---------------PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAH--YQSITCLKFSDDGSHIITGSKDG 145 (476)
T ss_pred ---------------ceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhh--ccceeEEEEeCCCcEEEecCCCc
Confidence 3444555555568888889999999999999999999766 55899999999999999999999
Q ss_pred cEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccc
Q 001295 633 GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITE 712 (1106)
Q Consensus 633 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 712 (1106)
.|.+|.+.+-. .....|.
T Consensus 146 ~V~vW~l~~lv---~a~~~~~----------------------------------------------------------- 163 (476)
T KOG0646|consen 146 AVLVWLLTDLV---SADNDHS----------------------------------------------------------- 163 (476)
T ss_pred cEEEEEEEeec---ccccCCC-----------------------------------------------------------
Confidence 99999875431 1110000
Q ss_pred cCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCC--CceEEEeecCceEEEeeccccccCCCCccccccCcc
Q 001295 713 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS--GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQ 790 (1106)
Q Consensus 713 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 790 (1106)
-..++.| ..|.-.|+++...+. ..++++++.|.++++||+..
T Consensus 164 --~~p~~~f------------------~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~---------------- 207 (476)
T KOG0646|consen 164 --VKPLHIF------------------SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL---------------- 207 (476)
T ss_pred --ccceeee------------------ccCcceeEEEEecCCCccceEEEecCCceEEEEEecc----------------
Confidence 0011222 237788888877664 45799999999999998873
Q ss_pred ccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCc----------------eeeeecCCCC-
Q 001295 791 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK----------------TMATFMPPPP- 852 (1106)
Q Consensus 791 ~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~----------------~~~~~~~~~~- 852 (1106)
|.++.... ....+.+++++|-+..+.+|. +|.|.+.++.... .+..+.+|.+
T Consensus 208 ------g~LLlti~----fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~ 277 (476)
T KOG0646|consen 208 ------GVLLLTIT----FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE 277 (476)
T ss_pred ------ceeeEEEe----cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCC
Confidence 33332211 577899999999999999998 8999988875322 3345678887
Q ss_pred -CeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCC
Q 001295 853 -AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL 906 (1106)
Q Consensus 853 -~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~ 906 (1106)
.|+|++++- ||.+|++|+.||.|+|||+.+.++++++..-.++|+.+.+.|-.
T Consensus 278 ~~ITcLais~-DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 278 SAITCLAIST-DGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE 331 (476)
T ss_pred cceeEEEEec-CccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence 999999999 99999999999999999999999999998778899999996643
No 133
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.3e-21 Score=189.49 Aligned_cols=284 Identities=14% Similarity=0.174 Sum_probs=210.5
Q ss_pred CCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeC
Q 001295 409 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA 488 (1106)
Q Consensus 409 ~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 488 (1106)
......|+.|.|+|.+..|++++.||++++||+...+... .-.|..++.+++|.++.+ +++|+.||.|+.+|+
T Consensus 10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dl 82 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDL 82 (323)
T ss_pred CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEe
Confidence 3457789999999999999999999999999999875433 235899999999998665 899999999999999
Q ss_pred CCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccc
Q 001295 489 TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 568 (1106)
Q Consensus 489 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~ 568 (1106)
.++.... +..|..+|.++...+.. ..+++||.|++|++||.+.......+.... .|.++..
T Consensus 83 n~~~~~~-igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v--------------- 143 (323)
T KOG1036|consen 83 NTGNEDQ-IGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDV--------------- 143 (323)
T ss_pred cCCccee-eccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEec---------------
Confidence 9887544 44599999999986544 579999999999999998643333333222 3444333
Q ss_pred eeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhh
Q 001295 569 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT 648 (1106)
Q Consensus 569 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 648 (1106)
.++.|+.|+.+..|.+||+++...........-.-.++|+++-|++.-+++++-||.|.+=.+... +....
T Consensus 144 --------~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s-~~~~s 214 (323)
T KOG1036|consen 144 --------SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDS-EEAQS 214 (323)
T ss_pred --------cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCc-hHHhh
Confidence 345699999999999999988654442222222235789999999888999999999887554433 11110
Q ss_pred hcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCC
Q 001295 649 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSE 728 (1106)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~ 728 (1106)
.+ . +|.+
T Consensus 215 kk-y-------------aFkC----------------------------------------------------------- 221 (323)
T KOG1036|consen 215 KK-Y-------------AFKC----------------------------------------------------------- 221 (323)
T ss_pred hc-e-------------eEEe-----------------------------------------------------------
Confidence 00 0 0000
Q ss_pred CccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCC
Q 001295 729 PNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN 808 (1106)
Q Consensus 729 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 808 (1106)
| .-..++ . .
T Consensus 222 -------------H-------r~~~~~----------~-----------------------------------------~ 230 (323)
T KOG1036|consen 222 -------------H-------RLSEKD----------T-----------------------------------------E 230 (323)
T ss_pred -------------e-------ecccCC----------c-----------------------------------------e
Confidence 0 000000 0 0
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeC
Q 001295 809 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD 872 (1106)
Q Consensus 809 ~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~ 872 (1106)
.-.+|.+++|+|--+.+++|+ ||.|.+||..+.+.+..+..-...|.+++|+. +|..||+|+.
T Consensus 231 ~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~-dG~~LAia~s 294 (323)
T KOG1036|consen 231 IIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSM-DGSLLAIASS 294 (323)
T ss_pred EEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEecc-CCCeEEEEec
Confidence 234578899999999999998 99999999999999988887778899999999 9999999873
No 134
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=6.2e-22 Score=191.31 Aligned_cols=295 Identities=17% Similarity=0.221 Sum_probs=217.5
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCcee
Q 001295 415 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ 494 (1106)
Q Consensus 415 V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 494 (1106)
-.|+.||+.|.+||+|+.||.|.|||+.|...-+ .+.+|..+|++++||+||+ .|+|++.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999866333 6889999999999999999 8999999999999999999999
Q ss_pred EEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEE
Q 001295 495 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 574 (1106)
Q Consensus 495 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~ 574 (1106)
+.+. ...+|+.+.|+|......+++ -.+..-.+-++.... -..+...+++..-. ...+..|
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~-~~~~sp~vi~~s~~~-----------h~~Lp~d~d~dln~------sas~~~f 161 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVAT-IMEESPVVIDFSDPK-----------HSVLPKDDDGDLNS------SASHGVF 161 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEE-EecCCcEEEEecCCc-----------eeeccCCCcccccc------ccccccc
Confidence 9887 778999999998876444443 333323333333211 11222223332111 1122358
Q ss_pred cCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhccccc
Q 001295 575 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY 654 (1106)
Q Consensus 575 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 654 (1106)
++.|+++++|...|.+.++|..+.+++..++... ...|..+.++..|+.|+.-+.|..||.|++..-... +
T Consensus 162 dr~g~yIitGtsKGkllv~~a~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~-----~--- 232 (405)
T KOG1273|consen 162 DRRGKYIITGTSKGKLLVYDAETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE-----G--- 232 (405)
T ss_pred cCCCCEEEEecCcceEEEEecchheeeeeeeech-heeeeEEEEeccCcEEEEecCCceEEEEehhhhccc-----C---
Confidence 8889999999999999999999999998887553 246888999999999999999999999987532000 0
Q ss_pred ccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCcccee
Q 001295 655 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS 734 (1106)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~ 734 (1106)
.++.+ ...
T Consensus 233 -----------------------------------------------------------r~~e~-----------e~~-- 240 (405)
T KOG1273|consen 233 -----------------------------------------------------------RDGEV-----------EPE-- 240 (405)
T ss_pred -----------------------------------------------------------ccCCc-----------Chh--
Confidence 00000 000
Q ss_pred cccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCee
Q 001295 735 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP 814 (1106)
Q Consensus 735 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~ 814 (1106)
| ++-|+ -..-.-.
T Consensus 241 -------~-----------------------------------------------K~qDv-------------VNk~~Wk 253 (405)
T KOG1273|consen 241 -------H-----------------------------------------------KLQDV-------------VNKLQWK 253 (405)
T ss_pred -------H-----------------------------------------------HHHHH-------------Hhhhhhh
Confidence 0 00000 0222335
Q ss_pred EEEEecCCCEEEEEe--CCeEEEEEcCCCceeeeecCCC-CCeeEEEEecCCCceEEEeeCCCcEEEEEeec
Q 001295 815 CFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 883 (1106)
Q Consensus 815 ~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~-~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~ 883 (1106)
+++||.+|.|++.++ ...++||....|.+++.+.|.. .....+.|.| -...+++- ..|.|+||....
T Consensus 254 ~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp-~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 254 KCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHP-VRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred heeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccc-ceeeeeec-cCCceEEEEeec
Confidence 688999999999887 4779999999999999999887 4577899999 66677766 789999998653
No 135
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=7e-22 Score=189.00 Aligned_cols=320 Identities=13% Similarity=0.188 Sum_probs=225.0
Q ss_pred ccccceEEEEEcC-CCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEe
Q 001295 741 LRATKISRLIFTN-SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 819 (1106)
Q Consensus 741 ~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s 819 (1106)
.|.+.|.++.+.+ .|+++++++.||.|.+||++..........++.. -..+.. ....+|...|..+.|-
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~---------~c~v~~-~h~~~Hky~iss~~Wy 110 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKH---------KCIVAK-QHENGHKYAISSAIWY 110 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceehe---------eeeccc-cCCccceeeeeeeEEe
Confidence 4889999999987 6899999999999999999864422221111110 000111 1112488899999999
Q ss_pred cCCC-EEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCC--CceEEEeeCCCcEEEEEeecceEEEEecCccc
Q 001295 820 KNDS-YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQD--NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 895 (1106)
Q Consensus 820 ~~~~-~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d--~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~ 895 (1106)
|-.. .+.+++ |.+++|||..+.+....|+ -.+.|.+-++||.. .-++|+|..|-.|++-|+.+|.+-..|.||.+
T Consensus 111 P~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~ 189 (397)
T KOG4283|consen 111 PIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD 189 (397)
T ss_pred eecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC
Confidence 8544 555666 9999999999988877776 45568888888732 24789999999999999999999999999999
Q ss_pred CeeEEEEecCCCE-EEEEcCCCcEEEEeCCCccc-------ccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCe
Q 001295 896 RITGLAFSHALNV-LVSSGADSQLCVWSSDGWEK-------QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQ 966 (1106)
Q Consensus 896 ~V~~l~~s~d~~~-l~s~s~Dg~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~ 966 (1106)
.|.+|.|+|...+ |++|+.||.|++||+..-.. .........+......+.+..++|+.||.++++ +.|..
T Consensus 190 ~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r 269 (397)
T KOG4283|consen 190 GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDR 269 (397)
T ss_pred ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccc
Confidence 9999999998765 78999999999999976310 000111111112223357889999999999999 79999
Q ss_pred EEEEecCCceEee-ecccCCCCCC---eeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccc
Q 001295 967 LAIFETTKLECVK-QWVPRESSAP---ITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1042 (1106)
Q Consensus 967 v~i~d~~~~~~~~-~~~~~~h~~~---v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1042 (1106)
+++|+..+|+-.. .+....|... -..+. +.+...++.--.|+.+.++++-.|+.+..+. +| ...+.
T Consensus 270 ~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~-------~h-~k~i~- 339 (397)
T KOG4283|consen 270 IRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLS-------TH-LKRIN- 339 (397)
T ss_pred eEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeee-------cc-cceee-
Confidence 9999998876422 2211122111 11133 4444455545567999999999999998887 32 22244
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEeecCCCCccCCCCCCCCCCCC
Q 001295 1043 LVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTS 1088 (1106)
Q Consensus 1043 ~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~~~~~~~~~~~~~~~~ 1088 (1106)
...|.| |=+.+.+|..|+++..|-+.-. ++.+-+.+...
T Consensus 340 -c~~~~~-~fq~~~tg~~d~ni~~w~p~l~-----~pt~~~d~~t~ 378 (397)
T KOG4283|consen 340 -CAAYRP-DFEQCFTGDMNGNIYMWSPALK-----SPTKISDLETR 378 (397)
T ss_pred -EEeecC-chhhhhccccCCcccccccccc-----CCccccccccc
Confidence 566666 6778999999999999987333 35555554443
No 136
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=1.7e-22 Score=213.40 Aligned_cols=435 Identities=16% Similarity=0.152 Sum_probs=275.1
Q ss_pred EEEEcc---CCCEEEEEeCCCeEEEEEccCCce---eeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC
Q 001295 417 RVIWSP---DGSLFGVAYSRHIVQIYSYHGGDE---VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 490 (1106)
Q Consensus 417 ~l~~sp---dg~~las~~~d~~v~iwd~~~~~~---~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 490 (1106)
+..|++ ....||.+.+||.|.++|...... .+++.....|...|..+.|.| |+. .|++++.|.++++||+++
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~-~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GES-LLVSASGDSTIRPWDVKT 131 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cce-eEEEccCCceeeeeeecc
Confidence 366766 345788999999999999875322 123445678999999999999 554 899999999999999999
Q ss_pred CceeEE--EeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccc
Q 001295 491 GAKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 568 (1106)
Q Consensus 491 ~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~ 568 (1106)
++++.. +.||.+.|.++||.+... ..|++|+.||.|.+||++-..... +.... .+++.++...+
T Consensus 132 s~l~G~~~~~GH~~SvkS~cf~~~n~-~vF~tGgRDg~illWD~R~n~~d~-~e~~~------------~~~~~~~n~~p 197 (720)
T KOG0321|consen 132 SRLVGGRLNLGHTGSVKSECFMPTNP-AVFCTGGRDGEILLWDCRCNGVDA-LEEFD------------NRIYGRHNTAP 197 (720)
T ss_pred ceeecceeecccccccchhhhccCCC-cceeeccCCCcEEEEEEeccchhh-HHHHh------------hhhhccccCCC
Confidence 998876 899999999999987654 799999999999999998543110 00000 00000000000
Q ss_pred eeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCe---EEEccCCCEEEEEeC-CCcEEEEEccCCch
Q 001295 569 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPR---IRFNKDGCLLAVSTN-DNGIKILATSDGIR 644 (1106)
Q Consensus 569 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~---v~~s~~~~~l~~~~~-dg~i~iwd~~~~~~ 644 (1106)
.|.. . ....++-|-+.. ..|.+ +.+..|...||+++. |+.|+|||++....
T Consensus 198 ------tpsk--p----~~kr~~k~kA~s-------------~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 198 ------TPSK--P----LKKRIRKWKAAS-------------NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred ------CCCc--h----hhcccccccccc-------------CceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence 0000 0 001122222211 12333 556678888998887 99999999987632
Q ss_pred hhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecC
Q 001295 645 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 724 (1106)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 724 (1106)
..+.-...... +.
T Consensus 253 ~~r~ep~~~~~-------------------------------------------------------------------~~ 265 (720)
T KOG0321|consen 253 AYRQEPRGSDK-------------------------------------------------------------------YP 265 (720)
T ss_pred ccccCCCcccC-------------------------------------------------------------------cc
Confidence 22211000000 00
Q ss_pred CCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccccc
Q 001295 725 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 804 (1106)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 804 (1106)
.. ......+.++.....|.++++.+.|+.|+.|++......+.+.. .|.+
T Consensus 266 ------------t~-skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~------------sg~~----- 315 (720)
T KOG0321|consen 266 ------------TH-SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEF------------SGKL----- 315 (720)
T ss_pred ------------Cc-ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhc------------cCcc-----
Confidence 00 00234577888888899999999999999999886554443321 1111
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCce-eeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEee
Q 001295 805 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 882 (1106)
Q Consensus 805 ~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~-~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~ 882 (1106)
....-..-..+||+.++++|+ |....+|.+.+.+. ...+.+|...|++++|.|-.-.-+|++++|-.++||++.
T Consensus 316 ----~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 316 ----NSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred ----cceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEecc
Confidence 111112235689999999999 99999999987554 455789999999999998555567778999999999986
Q ss_pred cce--------------EEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCc
Q 001295 883 VDE--------------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT 948 (1106)
Q Consensus 883 ~~~--------------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 948 (1106)
.+- ....+++|...+..+.++-.+.+-.. ..+..++|... .
T Consensus 392 ~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~p--R~~~~r~~ssP-----------------------~ 446 (720)
T KOG0321|consen 392 NGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKDP--REGMNRISSSP-----------------------V 446 (720)
T ss_pred Cchhhccccccchhhhhhhhhhhccccccccccccccccccch--hhhccccccCc-----------------------c
Confidence 542 12344566655555555433322221 13445555432 2
Q ss_pred eEEEcCCCcEEEE--E---eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEc-----------CCeEE
Q 001295 949 RVQFHQDQIHFLV--V---HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL-----------DATVC 1012 (1106)
Q Consensus 949 ~~~~s~dg~~l~~--~---~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~-----------Dg~i~ 1012 (1106)
.++..|++.-... + ..-.|...+....+....-...+|-..|....+++.+..+++++- ++.+.
T Consensus 447 s~a~~~s~~s~~~~~~~t~qt~~i~~~p~kr~~~~ss~~s~~~~~Svs~~d~ss~~s~~~s~SP~~~~~stpp~sets~~ 526 (720)
T KOG0321|consen 447 SLACSPSGASDDCGYGVTDQTSGIVVFPTKRNKPSSSRGSGGHLSSVSAEDWSSEKSQLASRSPQKNRGSTPPISETSVN 526 (720)
T ss_pred chhcCcCCcccccCCCcccccccceecchhccCccccccccccccccccCCCccccccccccCcccccCCCCCcCccccc
Confidence 3344444443333 1 112344555544444333333356677777778777778888887 78888
Q ss_pred EEEcCC
Q 001295 1013 VFSAAN 1018 (1106)
Q Consensus 1013 vwd~~~ 1018 (1106)
+|....
T Consensus 527 s~~s~l 532 (720)
T KOG0321|consen 527 SPNSSL 532 (720)
T ss_pred cccccc
Confidence 887643
No 137
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.3e-21 Score=198.97 Aligned_cols=249 Identities=13% Similarity=0.199 Sum_probs=195.2
Q ss_pred cccceEEEEEcCCCc-eEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEec
Q 001295 742 RATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 820 (1106)
Q Consensus 742 ~~~~i~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 820 (1106)
...+|.+.+|.|+|. .+++++....++.||+.+.+...-.. +.+. ....+....+|+
T Consensus 256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~---------------------~~g~-e~~~~e~FeVSh 313 (514)
T KOG2055|consen 256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKP---------------------PYGV-EEKSMERFEVSH 313 (514)
T ss_pred ccCccceeeecCCCceEEEecccceEEEEeeccccccccccC---------------------CCCc-ccchhheeEecC
Confidence 346788999999999 88888888999999886433211100 1110 234577889999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCccc-Cee
Q 001295 821 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK-RIT 898 (1106)
Q Consensus 821 ~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~-~V~ 898 (1106)
++++|+..+ .|.|.+....+++.+.+++ ..+.|..++|+. |++.|.+.+.+|.|++||+....++..+....+ .=+
T Consensus 314 d~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gt 391 (514)
T KOG2055|consen 314 DSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGT 391 (514)
T ss_pred CCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCcccee
Confidence 999999998 7999999999999998887 567899999999 788888888899999999999999988864322 235
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEeCCCccccc-ceeecccCCCCCCCCCCceEEEcCCCcEEEEE---eCCeEEEEecCC
Q 001295 899 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTK 974 (1106)
Q Consensus 899 ~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~---~d~~v~i~d~~~ 974 (1106)
++|.|+++.+||+|+..|.|.|||.++..... .+++.....-. ..|..+.|++|++.||.+ ....+++-.+.+
T Consensus 392 s~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 392 SLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred eeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence 78888999999999999999999976532111 11222222222 478999999999999984 567899999999
Q ss_pred ceEeeecccCCC-CCCeeEEEECCCCCEEEEEEcCCeEEEEEcC
Q 001295 975 LECVKQWVPRES-SAPITHATFSCDSQLVYACFLDATVCVFSAA 1017 (1106)
Q Consensus 975 ~~~~~~~~~~~h-~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~ 1017 (1106)
......|..... -+.|+||+|||.|.+||.|.++|.|.+|.+.
T Consensus 469 ~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 469 CTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 888888875432 4579999999999999999999999999864
No 138
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=3.5e-21 Score=203.39 Aligned_cols=456 Identities=12% Similarity=0.149 Sum_probs=285.7
Q ss_pred CcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEe
Q 001295 352 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 431 (1106)
Q Consensus 352 ~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 431 (1106)
.|..++|-|||..|++.+ +..+.|||+..|..+. ++++|.+.|+|++||.||+++|+|+
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llq-------------------tLKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQ-------------------PLKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCccccc-------------------ccccccceEEEEEEccCCceeccCC
Confidence 789999999999866654 4689999999998887 4899999999999999999999999
Q ss_pred CCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccc
Q 001295 432 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHH 511 (1106)
Q Consensus 432 ~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 511 (1106)
.|+.|.+|+-.-...++ + .|.+.|.|+.|+|-.. .++|++-. ..-+|........+ .+ ....+.+++|
T Consensus 73 aDK~VI~W~~klEG~Lk----Y-SH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~K-~k-ss~R~~~CsW-- 140 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK----Y-SHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVSK-HK-SSSRIICCSW-- 140 (1081)
T ss_pred CceeEEEecccccceee----e-ccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHHh-hh-hheeEEEeee--
Confidence 99999999876433332 2 5999999999999998 68888753 45688755433221 11 2344555665
Q ss_pred cCCceEEEEEecCCeEEEEeCCCCCceeEeeC---CCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCC
Q 001295 512 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEA---PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 588 (1106)
Q Consensus 512 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 588 (1106)
+.||.+++.|-.+|+|.+-+-. ++....+.. .+.+|.+++|+|... .| ....++...-..
T Consensus 141 tnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg---~G-------------~~di~aV~DW~q 203 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSG---EG-------------RNDILAVADWGQ 203 (1081)
T ss_pred cCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCC---CC-------------ccceEEEEeccc
Confidence 6778999999999999987543 333333333 455778888877653 00 112466677777
Q ss_pred eEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcC
Q 001295 589 SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTIS 668 (1106)
Q Consensus 589 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (1106)
++.+|.+ +|+.+..-..-+ ..-.|+.+-++|.++..|+.|+.+.+|-- .|..+ .
T Consensus 204 TLSFy~L-sG~~Igk~r~L~--FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrL-G--------------------- 257 (1081)
T KOG1538|consen 204 TLSFYQL-SGKQIGKDRALN--FDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRL-G--------------------- 257 (1081)
T ss_pred eeEEEEe-cceeecccccCC--CCchhheeccCCcEEEEccCCCceEEEee-cCeEE-e---------------------
Confidence 8888887 455544222111 13468999999999999999999999842 22100 0
Q ss_pred chhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEE
Q 001295 669 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR 748 (1106)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~ 748 (1106)
++ ......|..
T Consensus 258 ------------------------------------------------Tv---------------------g~~D~WIWt 268 (1081)
T KOG1538|consen 258 ------------------------------------------------TV---------------------GEQDSWIWT 268 (1081)
T ss_pred ------------------------------------------------ec---------------------cccceeEEE
Confidence 00 013467888
Q ss_pred EEEcCCCceEEEeecCceEEEeeccccccC-------CC--------------------------------Ccccc---c
Q 001295 749 LIFTNSGNAILALASNAIHLLWKWQRTERN-------SS--------------------------------GKATA---S 786 (1106)
Q Consensus 749 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~-------~~--------------------------------~~~~~---~ 786 (1106)
++..|++++++.|+.||+|-.|++...... .. ...++ .
T Consensus 269 V~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLp 348 (1081)
T KOG1538|consen 269 VQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLP 348 (1081)
T ss_pred EEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheeccc
Confidence 999999999999999999998887543100 00 00000 0
Q ss_pred cCccccCCCCCCccccccCCCCCCCCeeEEEEe---cCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEE--ec
Q 001295 787 VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS---KNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAF--HP 861 (1106)
Q Consensus 787 ~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s---~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~--s~ 861 (1106)
..+.++...++.......+- ...-+..+.+| -.+..++.+.+..+..+|...-+. +... -.+-|.-+.. -|
T Consensus 349 eki~iYel~se~~~~mhY~v--~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~-ReW~-M~S~iRYikV~GGP 424 (1081)
T KOG1538|consen 349 EKILIYELYSEDLSDMHYRV--KEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKE-REWQ-MESLIRYIKVIGGP 424 (1081)
T ss_pred ceEEEEeccccccccchhHH--HHHHHhhccceEEEEEcCeEEEEcccceeeecccchhh-hhhh-HHHHHHhhhhhcCC
Confidence 02233333333211110000 00000001111 134455556566677777653211 1100 0000111111 12
Q ss_pred CCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCC
Q 001295 862 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT 941 (1106)
Q Consensus 862 ~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 941 (1106)
.+..-|++|..||.|.-.=+.+.-++- +......|.|+..+...+.||+..+.++..++|+.+++. .++.
T Consensus 425 ~gREgL~vGlknGqV~kiF~dN~~PiL-l~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~el----L~QE----- 494 (1081)
T KOG1538|consen 425 PGREGLLVGLKNGQVLKIFVDNLFPIL-LLKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKEL----LFQE----- 494 (1081)
T ss_pred CCcceeEEEecCCcEEEEEecCCchhh-eecccceeEEeeccCCcceEEEEccCCeEEEEEccCCce----Eeec-----
Confidence 245678889999977544334332222 223456799999999999999999999999999999653 2222
Q ss_pred CCCCCCceEEEcCCCcEEEE-EeCCeEEE
Q 001295 942 PTAQSDTRVQFHQDQIHFLV-VHETQLAI 969 (1106)
Q Consensus 942 ~~~~~i~~~~~s~dg~~l~~-~~d~~v~i 969 (1106)
....+++|+....-+.+ +..|.+.|
T Consensus 495 ---pg~nSV~wNT~~E~MlcfT~~g~L~V 520 (1081)
T KOG1538|consen 495 ---PGANSVAWNTQCEDMLCFTGGGYLNV 520 (1081)
T ss_pred ---CCCceEEeeccccceEEEecCCceEE
Confidence 24678888876444433 44454443
No 139
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=2e-21 Score=203.53 Aligned_cols=313 Identities=16% Similarity=0.210 Sum_probs=228.5
Q ss_pred eeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEE
Q 001295 451 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 530 (1106)
Q Consensus 451 ~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 530 (1106)
..+.||.+.|.+|...|.|. +|++|+.||+|+||.+.+|.|++++. ..+.|.|++|++.++...|+++-.+. +.+-
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~--wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~iv 469 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGE--WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIV 469 (733)
T ss_pred eeEeccCCeEEEEEecCCcc--eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEEe
Confidence 45789999999999999999 89999999999999999999999887 56789999999998866666655444 5544
Q ss_pred eCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEE----ECCCeEEEEECCCcce----eE
Q 001295 531 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA----GDDFSIKFWDMDSVQL----LT 602 (1106)
Q Consensus 531 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~d~~i~iwd~~~~~~----~~ 602 (1106)
+..-+..+.... ....|+++ ..++.+..|.-..... +.
T Consensus 470 np~~G~~~e~~~----------------------------------t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~ 515 (733)
T KOG0650|consen 470 NPIFGDRLEVGP----------------------------------TKELLASAPNESEPDAAVVTWSRASLDELEKGVC 515 (733)
T ss_pred Cccccchhhhcc----------------------------------hhhhhhcCCCccCCcccceeechhhhhhhccceE
Confidence 432221111000 00012222 2355777886542211 11
Q ss_pred EEccCCCCCCcCeEEEccCCCEEEEEeCC---CcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhc
Q 001295 603 SIDADGGLPASPRIRFNKDGCLLAVSTND---NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAAT 679 (1106)
Q Consensus 603 ~~~~~~~~~~v~~v~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (1106)
..-.+ ...|..+.|+..|.||++..-+ ..|.|.++... ....
T Consensus 516 ~~I~~--~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~-~sQ~-------------------------------- 560 (733)
T KOG0650|consen 516 IVIKH--PKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKR-KSQS-------------------------------- 560 (733)
T ss_pred EEEec--CCccceeeeecCCceEEEeccCCCcceEEEEecccc-cccC--------------------------------
Confidence 22222 4469999999999999987654 34555555332 0000
Q ss_pred ccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEE
Q 001295 680 SAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAIL 759 (1106)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 759 (1106)
.+ ....+.|.++.|.|...+++
T Consensus 561 ---------------------------------------------------PF-------~kskG~vq~v~FHPs~p~lf 582 (733)
T KOG0650|consen 561 ---------------------------------------------------PF-------RKSKGLVQRVKFHPSKPYLF 582 (733)
T ss_pred ---------------------------------------------------ch-------hhcCCceeEEEecCCCceEE
Confidence 00 11456788999999999888
Q ss_pred EeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEc
Q 001295 760 ALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNM 838 (1106)
Q Consensus 760 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~ 838 (1106)
+++.. .|+|||+. .+.++...+. ....|..++.+|.|..|+.|+ |+.+..||+
T Consensus 583 VaTq~-~vRiYdL~----------------------kqelvKkL~t---g~kwiS~msihp~GDnli~gs~d~k~~WfDl 636 (733)
T KOG0650|consen 583 VATQR-SVRIYDLS----------------------KQELVKKLLT---GSKWISSMSIHPNGDNLILGSYDKKMCWFDL 636 (733)
T ss_pred EEecc-ceEEEehh----------------------HHHHHHHHhc---CCeeeeeeeecCCCCeEEEecCCCeeEEEEc
Confidence 87765 67888765 3333333333 467899999999999999999 999999999
Q ss_pred CC-CceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEee------cc---eEEEEecCcccC----eeEEEEec
Q 001295 839 MT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR------VD---EVKSKLKGHSKR----ITGLAFSH 904 (1106)
Q Consensus 839 ~~-~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~------~~---~~~~~l~~h~~~----V~~l~~s~ 904 (1106)
.- .+..+++..|...+++++|++ .-.++++|+.||++.|+.-. .. -.+..+++|... |..+.|+|
T Consensus 637 dlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP 715 (733)
T KOG0650|consen 637 DLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHP 715 (733)
T ss_pred ccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccC
Confidence 84 456788899999999999999 88899999999999998632 11 245778899876 99999999
Q ss_pred CCCEEEEEcCCCcEEEE
Q 001295 905 ALNVLVSSGADSQLCVW 921 (1106)
Q Consensus 905 d~~~l~s~s~Dg~i~vw 921 (1106)
...+|+|++.||+|++|
T Consensus 716 ~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 716 RQPWLFSAGADGTIRLF 732 (733)
T ss_pred CCceEEecCCCceEEee
Confidence 99999999999999998
No 140
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=2.3e-20 Score=204.90 Aligned_cols=294 Identities=12% Similarity=0.135 Sum_probs=204.3
Q ss_pred CCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCC
Q 001295 424 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 503 (1106)
Q Consensus 424 g~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 503 (1106)
++.+++++.|+.|++||+.+++.+. .+..|. .+.+++|+|+++. ++++++.++.|++||..+++.+..+..+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~---~~~~~~-~~~~l~~~~dg~~-l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~- 74 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTR---TFPVGQ-RPRGITLSKDGKL-LYVCASDSDTIQVIDLATGEVIGTLPSGPD- 74 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEE---EEECCC-CCCceEECCCCCE-EEEEECCCCeEEEEECCCCcEEEeccCCCC-
Confidence 3578899999999999999887655 444443 4678999999984 346778899999999999988887765544
Q ss_pred eEEEeccccCCceEE-EEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEE
Q 001295 504 VYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 582 (1106)
Q Consensus 504 v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 582 (1106)
+..++|+++ ++.+ ++++.++.|++||+.+...+..+... ..+. .+.++|++.+++
T Consensus 75 ~~~~~~~~~--g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~---------------------~~~~~~dg~~l~ 130 (300)
T TIGR03866 75 PELFALHPN--GKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPE---------------------GMAVSPDGKIVV 130 (300)
T ss_pred ccEEEECCC--CCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcc---------------------eEEECCCCCEEE
Confidence 456676554 4555 45567899999999875544333211 1123 355556666787
Q ss_pred EEECCC-eEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEe-CCCcEEEEEccCCchhhhhhcccccccccCC
Q 001295 583 AAGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRTFENLAYDASRTS 660 (1106)
Q Consensus 583 ~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 660 (1106)
++..++ .+.+||..+++......... ...+++|+|++++|++++ .++.|++||+.++ +..+.+.
T Consensus 131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~---------- 196 (300)
T TIGR03866 131 NTSETTNMAHFIDTKTYEIVDNVLVDQ---RPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKIT---------- 196 (300)
T ss_pred EEecCCCeEEEEeCCCCeEEEEEEcCC---CccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeee----------
Confidence 777654 57788998887766553322 357799999999886554 5899999998766 2111110
Q ss_pred CCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCcc
Q 001295 661 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 740 (1106)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 740 (1106)
T Consensus 197 -------------------------------------------------------------------------------- 196 (300)
T TIGR03866 197 -------------------------------------------------------------------------------- 196 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEec
Q 001295 741 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 820 (1106)
Q Consensus 741 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 820 (1106)
+...+. .. .......++|+|
T Consensus 197 ----------~~~~~~------~~--------------------------------------------~~~~~~~i~~s~ 216 (300)
T TIGR03866 197 ----------FEIPGV------HP--------------------------------------------EAVQPVGIKLTK 216 (300)
T ss_pred ----------eccccc------cc--------------------------------------------ccCCccceEECC
Confidence 000000 00 011123577888
Q ss_pred CCCEEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEe-eCCCcEEEEEeecceEEEEecCcccCe
Q 001295 821 NDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG-MDDSSIQIYNVRVDEVKSKLKGHSKRI 897 (1106)
Q Consensus 821 ~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g-~~dg~v~iwd~~~~~~~~~l~~h~~~V 897 (1106)
++++++++. ++.|.+||..+++....+. +...+.+++|+| ++++|+++ ..+|.|++||+.+++++..+... ...
T Consensus 217 dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~ 293 (300)
T TIGR03866 217 DGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLP 293 (300)
T ss_pred CCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-ccc
Confidence 888755443 6789999998887766553 345789999999 88888776 56899999999999999998765 556
Q ss_pred eEEEEec
Q 001295 898 TGLAFSH 904 (1106)
Q Consensus 898 ~~l~~s~ 904 (1106)
++++++|
T Consensus 294 ~~~~~~~ 300 (300)
T TIGR03866 294 WGVVVRP 300 (300)
T ss_pred ceeEeCC
Confidence 8888875
No 141
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=2.4e-22 Score=205.15 Aligned_cols=234 Identities=20% Similarity=0.344 Sum_probs=183.6
Q ss_pred ceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEc
Q 001295 342 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 421 (1106)
Q Consensus 342 ~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 421 (1106)
.-.++.+|+++-..++|++...-.|++|+.|++|.+||+....... ........+.+|+..|..++|+
T Consensus 169 Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~------------~~~~p~~~~~~h~~~VeDV~~h 236 (422)
T KOG0264|consen 169 PDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED------------KVVDPKTIFSGHEDVVEDVAWH 236 (422)
T ss_pred CceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC------------ccccceEEeecCCcceehhhcc
Confidence 3456777999899999999887779999999999999998654321 0011223589999999999999
Q ss_pred c-CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC-CceeEEEec
Q 001295 422 P-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQYIFEG 499 (1106)
Q Consensus 422 p-dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~ 499 (1106)
+ +..+|++++.|+.+.|||++++ ..+......+|.+.|+|++|+|-+.. +|||||.|++|++||+++ .+++.++.+
T Consensus 237 ~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~-ilAT~S~D~tV~LwDlRnL~~~lh~~e~ 314 (422)
T KOG0264|consen 237 PLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEF-ILATGSADKTVALWDLRNLNKPLHTFEG 314 (422)
T ss_pred ccchhhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCCCc-eEEeccCCCcEEEeechhcccCceeccC
Confidence 9 7788999999999999999964 33444467899999999999999887 899999999999999996 457899999
Q ss_pred cCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCC
Q 001295 500 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 579 (1106)
Q Consensus 500 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~ 579 (1106)
|...|..+.|+|..+ ..|++++.|+.+.+||+..-...............+.| .-|.+...|..+.|+|...
T Consensus 315 H~dev~~V~WSPh~e-tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF-------~HgGH~~kV~DfsWnp~eP 386 (422)
T KOG0264|consen 315 HEDEVFQVEWSPHNE-TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLF-------IHGGHTAKVSDFSWNPNEP 386 (422)
T ss_pred CCcceEEEEeCCCCC-ceeEecccCCcEEEEeccccccccChhhhccCCcceeE-------EecCcccccccccCCCCCC
Confidence 999999999998876 69999999999999999865544331111111222222 2333445678888888888
Q ss_pred EEEE-EECCCeEEEEECCC
Q 001295 580 RFLA-AGDDFSIKFWDMDS 597 (1106)
Q Consensus 580 ~l~~-~~~d~~i~iwd~~~ 597 (1106)
++++ .++|+.+.||.+..
T Consensus 387 W~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 387 WTIASVAEDNILQIWQMAE 405 (422)
T ss_pred eEEEEecCCceEEEeeccc
Confidence 7655 78999999999853
No 142
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.3e-21 Score=197.37 Aligned_cols=292 Identities=15% Similarity=0.246 Sum_probs=224.2
Q ss_pred cCCeeEEEEcCCCCceEEEEecCCCcEEEEeCC--CCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCC
Q 001295 457 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT--NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 534 (1106)
Q Consensus 457 ~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 534 (1106)
.++|++|.|+|... ++++++.|++++||-+. ....++.+.--..+|.+.+|.+.+. ..+++++....++.||+.+
T Consensus 213 ~~~I~sv~FHp~~p--lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~-~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP--LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGH-SVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred cCCceEEEecCCCc--eEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCc-eEEEecccceEEEEeeccc
Confidence 46899999999998 89999999999999875 4556777766778999999876543 3899999999999999987
Q ss_pred CCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcC
Q 001295 535 LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASP 614 (1106)
Q Consensus 535 ~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~ 614 (1106)
.+....-. ..|.....+....+++++++++..+..|.|.+....+++.+..++..+. |.
T Consensus 290 ak~~k~~~------------------~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~---v~ 348 (514)
T KOG2055|consen 290 AKVTKLKP------------------PYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGV---VS 348 (514)
T ss_pred cccccccC------------------CCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccE---Ee
Confidence 54332111 1112223455667777778999999999999999999999999987654 88
Q ss_pred eEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccC
Q 001295 615 RIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIP 694 (1106)
Q Consensus 615 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1106)
.++|+.|++.|++.+.+|.|.+||++.. .+++.+..
T Consensus 349 ~~~fsSdsk~l~~~~~~GeV~v~nl~~~-~~~~rf~D------------------------------------------- 384 (514)
T KOG2055|consen 349 DFTFSSDSKELLASGGTGEVYVWNLRQN-SCLHRFVD------------------------------------------- 384 (514)
T ss_pred eEEEecCCcEEEEEcCCceEEEEecCCc-ceEEEEee-------------------------------------------
Confidence 9999999999999999999999999876 33332211
Q ss_pred CCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccc
Q 001295 695 GMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR 774 (1106)
Q Consensus 695 ~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 774 (1106)
+ ..-.-++++.++++.++++|+..|.|-|||.+.
T Consensus 385 -----------------------------~-----------------G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 385 -----------------------------D-----------------GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred -----------------------------c-----------------CccceeeeeecCCCceEEeccCcceEEEeccch
Confidence 1 011225678889999999999999999999764
Q ss_pred cccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe---CCeEEEEEcCCCceeeeecCC-
Q 001295 775 TERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPP- 850 (1106)
Q Consensus 775 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~- 850 (1106)
.-.+...+. +.. + ......|+++.|++|.+.||.++ ...+++-.+.+......+...
T Consensus 419 ~~~s~~PkP----------------ik~-~--dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n 479 (514)
T KOG2055|consen 419 CFASTNPKP----------------IKT-V--DNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSN 479 (514)
T ss_pred hhccCCCCc----------------hhh-h--hhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCC
Confidence 322211111 111 0 12466799999999999999998 477999999887776666543
Q ss_pred --CCCeeEEEEecCCCceEEEeeCCCcEEEEEee
Q 001295 851 --PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 882 (1106)
Q Consensus 851 --~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~ 882 (1106)
-+.|+|++||| .+.++|.|..+|.|.+|.+.
T Consensus 480 ~~vg~vtc~aFSP-~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 480 TKVGHVTCMAFSP-NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CcccceEEEEecC-CCceEEeecCCCceeeEeec
Confidence 34689999999 88999999999999999864
No 143
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=7.1e-21 Score=201.12 Aligned_cols=458 Identities=14% Similarity=0.185 Sum_probs=284.9
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCce
Q 001295 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 493 (1106)
Q Consensus 414 ~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 493 (1106)
.|..++|-|||..|+.+. +..+.+||...|..+. ++++|.+.|++++|+.||+ .++||+.|+.|.+|+-+- +-
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llq---tLKgHKDtVycVAys~dGk--rFASG~aDK~VI~W~~kl-EG 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQ---PLKGHKDTVYCVAYAKDGK--RFASGSADKSVIIWTSKL-EG 86 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCccccc---ccccccceEEEEEEccCCc--eeccCCCceeEEEecccc-cc
Confidence 799999999999998875 4559999999998776 7999999999999999999 899999999999998542 22
Q ss_pred eEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEE
Q 001295 494 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 573 (1106)
Q Consensus 494 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 573 (1106)
+-.+ .|.+.|.|+.|+|-. +.|++++.. ..-+|..... .+........+.+++
T Consensus 87 ~LkY-SH~D~IQCMsFNP~~--h~LasCsLs-dFglWS~~qK-----------------------~V~K~kss~R~~~Cs 139 (1081)
T KOG1538|consen 87 ILKY-SHNDAIQCMSFNPIT--HQLASCSLS-DFGLWSPEQK-----------------------SVSKHKSSSRIICCS 139 (1081)
T ss_pred eeee-ccCCeeeEeecCchH--HHhhhcchh-hccccChhhh-----------------------hHHhhhhheeEEEee
Confidence 2233 399999999998765 678888753 2456644321 111111122455566
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCC-----CEEEEEeCCCcEEEEEccCCchhhhh
Q 001295 574 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG-----CLLAVSTNDNGIKILATSDGIRLLRT 648 (1106)
Q Consensus 574 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~ 648 (1106)
|..||.+++.|-.+|+|.+-+....+.+..-...+...+|.+++|+|.. ..+++.....++.++.+... .
T Consensus 140 WtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-~---- 214 (1081)
T KOG1538|consen 140 WTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-Q---- 214 (1081)
T ss_pred ecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-e----
Confidence 6677779999999999999986444434333333445689999999953 34555555555555543221 0
Q ss_pred hcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCC
Q 001295 649 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSE 728 (1106)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~ 728 (1106)
T Consensus 215 -------------------------------------------------------------------------------- 214 (1081)
T KOG1538|consen 215 -------------------------------------------------------------------------------- 214 (1081)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCC
Q 001295 729 PNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN 808 (1106)
Q Consensus 729 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 808 (1106)
.++-+.+ .-.-.++.+.++|.+++.|+.|+.+.+|.-. |..+.. +. .
T Consensus 215 Igk~r~L-------~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-----------------------GvrLGT-vg--~ 261 (1081)
T KOG1538|consen 215 IGKDRAL-------NFDPCCISYFTNGEYILLGGSDKQLSLFTRD-----------------------GVRLGT-VG--E 261 (1081)
T ss_pred ecccccC-------CCCchhheeccCCcEEEEccCCCceEEEeec-----------------------CeEEee-cc--c
Confidence 0001111 1223578889999999999999999998643 211111 11 1
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeee------------------e-cCCCCCee------EEEEecC
Q 001295 809 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT------------------F-MPPPPAAT------FLAFHPQ 862 (1106)
Q Consensus 809 ~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~------------------~-~~~~~~v~------~l~~s~~ 862 (1106)
....|+.++..|++++++.|+ ||+|..|++........ + .+....|. .+++-
T Consensus 262 ~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiY-- 339 (1081)
T KOG1538|consen 262 QDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIY-- 339 (1081)
T ss_pred cceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhh--
Confidence 678999999999999999999 99999999753221100 0 01111111 12221
Q ss_pred CCceEEEeeCCCcEEEEEeecceEEEEe-cCcccCeeEEEEe---cCCCEEEEEcCCCcEEEEeCCCcccccce------
Q 001295 863 DNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRITGLAFS---HALNVLVSSGADSQLCVWSSDGWEKQKNR------ 932 (1106)
Q Consensus 863 d~~~la~g~~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~s---~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~------ 932 (1106)
.+.||+--.+ .|.||.+.+++....- +-...-+..+.+| -.++.|+.+ .|..+.-+|+..-+...+.
T Consensus 340 -rnrLAVQLpe-ki~iYel~se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVlC-qekrLqClDF~Gvk~ReW~M~S~iR 416 (1081)
T KOG1538|consen 340 -RNRLAVQLPE-KILIYELYSEDLSDMHYRVKEKIIKKFECSLLVVCANHIVLC-QEKRLQCLDFSGVKEREWQMESLIR 416 (1081)
T ss_pred -hhhheecccc-eEEEEeccccccccchhHHHHHHHhhccceEEEEEcCeEEEE-cccceeeecccchhhhhhhHHHHHH
Confidence 2345555433 6888888765432110 0000111111111 123445444 4566888887764433321
Q ss_pred eecccCCCCCCCCCCceEEEcCCC-cEEEEE-eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCe
Q 001295 933 FLQIPTGRTPTAQSDTRVQFHQDQ-IHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT 1010 (1106)
Q Consensus 933 ~~~~~~~~~~~~~~i~~~~~s~dg-~~l~~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~ 1010 (1106)
.+.+..| |-| .-|++| .+|.|.-.-+++.-.+... .....|.|+.++...+.||+..+.++
T Consensus 417 YikV~GG--------------P~gREgL~vGlknGqV~kiF~dN~~PiLl~---~~~tAvrClDINA~R~kLAvVDD~~~ 479 (1081)
T KOG1538|consen 417 YIKVIGG--------------PPGREGLLVGLKNGQVLKIFVDNLFPILLL---KQATAVRCLDINASRKKLAVVDDNDT 479 (1081)
T ss_pred hhhhhcC--------------CCCcceeEEEecCCcEEEEEecCCchhhee---cccceeEEeeccCCcceEEEEccCCe
Confidence 1222222 222 223343 5655432223333222221 22668999999999999999999999
Q ss_pred EEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEe
Q 001295 1011 VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1059 (1106)
Q Consensus 1011 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~ 1059 (1106)
..++|+.+++.+.+-. | .+ +++|.....++|+-.+
T Consensus 480 c~v~DI~t~elL~QEp-------g-----~n--SV~wNT~~E~MlcfT~ 514 (1081)
T KOG1538|consen 480 CLVYDIDTKELLFQEP-------G-----AN--SVAWNTQCEDMLCFTG 514 (1081)
T ss_pred EEEEEccCCceEeecC-------C-----Cc--eEEeeccccceEEEec
Confidence 9999999999886533 2 44 6677765555554333
No 144
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.4e-20 Score=181.93 Aligned_cols=275 Identities=12% Similarity=0.185 Sum_probs=207.9
Q ss_pred CCCcceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEE
Q 001295 338 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 417 (1106)
Q Consensus 338 ~~~~~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~ 417 (1106)
..|..+..++.|.. -.|+.||+.|.+ ||+|..||.|.|||+.|...-. ++.+|..+|.+
T Consensus 12 ~~PEel~~tld~~~-a~~~~Fs~~G~~-lAvGc~nG~vvI~D~~T~~iar-------------------~lsaH~~pi~s 70 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL-AECCQFSRWGDY-LAVGCANGRVVIYDFDTFRIAR-------------------MLSAHVRPITS 70 (405)
T ss_pred cChHhhceeccCCc-cceEEeccCcce-eeeeccCCcEEEEEccccchhh-------------------hhhccccceeE
Confidence 34667777888766 899999999995 9999999999999998865332 58999999999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEE
Q 001295 418 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 497 (1106)
Q Consensus 418 l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 497 (1106)
++||+||+.|+++|.|..|.+||+..|.+++++ ....+|+.+.|.|...+..++ .-.+..-.+-++..++. ..+
T Consensus 71 l~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va-~~~~~sp~vi~~s~~~h-~~L 144 (405)
T KOG1273|consen 71 LCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVA-TIMEESPVVIDFSDPKH-SVL 144 (405)
T ss_pred EEecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEE-EEecCCcEEEEecCCce-eec
Confidence 999999999999999999999999999977643 246799999999987763444 33344455555544221 111
Q ss_pred ec-cCCCeE--EEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCC-CeeEEEEEecCCCeEEEeeeccc-----
Q 001295 498 EG-HEAPVY--SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG-RWCTTMAYSADGTRTYQGFRKRS----- 568 (1106)
Q Consensus 498 ~~-h~~~v~--~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~~~~~~~~----- 568 (1106)
.. ..+... .-+-..+..|+++++|...|.+.++|..+.+.+..+.... ..|..+.++..|+.++....+..
T Consensus 145 p~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye 224 (405)
T KOG1273|consen 145 PKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYE 224 (405)
T ss_pred cCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEe
Confidence 11 111111 1111245667899999999999999999998887776665 67888999988885544333322
Q ss_pred ---------------------------eeEEEEcCCCCEEEEEE-CCCeEEEEECCCcceeEEEccCCCCCCcCeEEEcc
Q 001295 569 ---------------------------LGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 620 (1106)
Q Consensus 569 ---------------------------i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 620 (1106)
-..++|+.+|.++++++ ....++||....|.+++.+.+..+ .....+.|+|
T Consensus 225 ~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg-E~l~DV~whp 303 (405)
T KOG1273|consen 225 ISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG-EELLDVNWHP 303 (405)
T ss_pred hhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch-hheeeccccc
Confidence 23478999999998876 457899999999999999987653 2466889999
Q ss_pred CCCEEEEEeCCCcEEEEEccC
Q 001295 621 DGCLLAVSTNDNGIKILATSD 641 (1106)
Q Consensus 621 ~~~~l~~~~~dg~i~iwd~~~ 641 (1106)
-...+++- ..|.+++|....
T Consensus 304 ~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 304 VRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred ceeeeeec-cCCceEEEEeec
Confidence 88888777 669999998754
No 145
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=3.7e-20 Score=178.89 Aligned_cols=268 Identities=19% Similarity=0.388 Sum_probs=191.0
Q ss_pred ccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC----ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEE
Q 001295 454 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG----AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 529 (1106)
Q Consensus 454 ~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 529 (1106)
.+|.+-|.++.|.+.|+ .+++|+.|++|+|||.++. .+....+.|.+.|..+.|.+..-|+.+++++.|+++.+
T Consensus 10 s~h~DlihdVs~D~~GR--RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGR--RMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cCCcceeeeeeecccCc--eeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 47999999999999999 7999999999999996543 45567889999999999998888999999999999999
Q ss_pred EeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCC
Q 001295 530 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 609 (1106)
Q Consensus 530 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 609 (1106)
|.-. ...+..++ +-|.. ..++. ..
T Consensus 88 WEE~----~~~~~~~~---------------------------------------------~~Wv~-----~ttl~--Ds 111 (361)
T KOG2445|consen 88 WEEQ----EKSEEAHG---------------------------------------------RRWVR-----RTTLV--DS 111 (361)
T ss_pred eeec----cccccccc---------------------------------------------ceeEE-----EEEee--cC
Confidence 9532 11111111 11211 11121 11
Q ss_pred CCCcCeEEEcc--CCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccccccc
Q 001295 610 LPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 687 (1106)
Q Consensus 610 ~~~v~~v~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1106)
...|+++.|.| -|-.|++++.||.+|||+..+..
T Consensus 112 rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~-------------------------------------------- 147 (361)
T KOG2445|consen 112 RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM-------------------------------------------- 147 (361)
T ss_pred CcceeEEEecchhcceEEEEeccCcEEEEEecCCcc--------------------------------------------
Confidence 33688899999 58899999999999999875541
Q ss_pred ccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceE
Q 001295 688 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 767 (1106)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 767 (1106)
.+.-|.+.. .+..+.. |-+
T Consensus 148 -----------------------------nLs~W~Lq~-----Ei~~~~~---------------pp~------------ 166 (361)
T KOG2445|consen 148 -----------------------------NLSQWTLQH-----EIQNVID---------------PPG------------ 166 (361)
T ss_pred -----------------------------ccccchhhh-----hhhhccC---------------Ccc------------
Confidence 112222221 0000000 000
Q ss_pred EEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC---CCEEEEEeCC------eEEEEEc
Q 001295 768 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN---DSYVMSASGG------KISLFNM 838 (1106)
Q Consensus 768 ~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~---~~~l~~~sdg------~i~vwd~ 838 (1106)
.+.....|+.|+|. ..+||+|+|. .+.||..
T Consensus 167 ----------------------------------------~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~ 206 (361)
T KOG2445|consen 167 ----------------------------------------KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEY 206 (361)
T ss_pred ----------------------------------------cccCcceEEeeccccccCceEEEEcccCCccccceEEEEe
Confidence 02333445555442 3467777644 6788876
Q ss_pred CCC----ceeeeecCCCCCeeEEEEecCCC---ceEEEeeCCCcEEEEEeecc--------------------eEEEEec
Q 001295 839 MTF----KTMATFMPPPPAATFLAFHPQDN---NIIAIGMDDSSIQIYNVRVD--------------------EVKSKLK 891 (1106)
Q Consensus 839 ~~~----~~~~~~~~~~~~v~~l~~s~~d~---~~la~g~~dg~v~iwd~~~~--------------------~~~~~l~ 891 (1106)
... ..+.++.+|..+|+.++|.|.-| .+||+++.|| |+||.+... +.+..+.
T Consensus 207 ~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~ 285 (361)
T KOG2445|consen 207 NENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD 285 (361)
T ss_pred cCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeecc
Confidence 532 23566789999999999999544 5899999999 999998731 2456678
Q ss_pred CcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCC
Q 001295 892 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 925 (1106)
Q Consensus 892 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~ 925 (1106)
+|.+.|+.+.|.--|..|+|.|.||.||+|...-
T Consensus 286 ~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 286 DHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred CCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 9999999999999999999999999999997554
No 146
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=5.8e-21 Score=201.97 Aligned_cols=291 Identities=13% Similarity=0.115 Sum_probs=205.7
Q ss_pred CceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeE
Q 001295 755 GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKI 833 (1106)
Q Consensus 755 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i 833 (1106)
...|+.+.++|.|.++|.....+. ++..++.. . ..|.+.|..+.|-|....|++++ |.++
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr---------------~ee~~lk~--~--~aH~nAifDl~wapge~~lVsasGDsT~ 124 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFR---------------LEERQLKK--P--LAHKNAIFDLKWAPGESLLVSASGDSTI 124 (720)
T ss_pred cceEEEecCCCceeeecchhhhcc---------------hhhhhhcc--c--ccccceeEeeccCCCceeEEEccCCcee
Confidence 345667777899999987643332 11111111 1 23999999999999777888887 8999
Q ss_pred EEEEcCCCceeee--ecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecce--------------------------
Q 001295 834 SLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-------------------------- 885 (1106)
Q Consensus 834 ~vwd~~~~~~~~~--~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~-------------------------- 885 (1106)
++||+++.++... +.+|...|.+++|.|.+...+++|+.||.|.|||+.-..
T Consensus 125 r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~ 204 (720)
T KOG0321|consen 125 RPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK 204 (720)
T ss_pred eeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence 9999999888877 889999999999999889999999999999999985211
Q ss_pred -EEEEecCcccCeeE---EEEecCCCEEEEEcC-CCcEEEEeCCCcccccc-eeecccCC--CCCCCCCCceEEEcCCCc
Q 001295 886 -VKSKLKGHSKRITG---LAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKN-RFLQIPTG--RTPTAQSDTRVQFHQDQI 957 (1106)
Q Consensus 886 -~~~~l~~h~~~V~~---l~~s~d~~~l~s~s~-Dg~i~vwd~~~~~~~~~-~~~~~~~~--~~~~~~~i~~~~~s~dg~ 957 (1106)
.+....+|...|.+ +.+..|...||++|. |+.|+|||+........ .......- +....-.+.++.....|.
T Consensus 205 kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt 284 (720)
T KOG0321|consen 205 KRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT 284 (720)
T ss_pred ccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence 12233456666666 667789999999998 99999999987532211 11111111 111123456666667778
Q ss_pred EEEE-EeCCeEEEEecCCceEeeecccCCCCC--CeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCC
Q 001295 958 HFLV-VHETQLAIFETTKLECVKQWVPRESSA--PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG 1034 (1106)
Q Consensus 958 ~l~~-~~d~~v~i~d~~~~~~~~~~~~~~h~~--~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1034 (1106)
+|.+ +.|+.|+.|++.+...-......++.. --..-..+||+.+|++|+.|...++|.+.+-+.--.+. + |
T Consensus 285 ~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l----~--G 358 (720)
T KOG0321|consen 285 YLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL----L--G 358 (720)
T ss_pred eEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh----h--C
Confidence 8877 799999999998765432222223211 11223469999999999999999999998765543322 2 3
Q ss_pred CCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295 1035 VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus 1035 ~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
|... |. .++|.|.+-.-++|+++|-.+++|++..+-
T Consensus 359 ht~e-Vt--~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 359 HTRE-VT--TVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred cceE-EE--EEeeccccCCCceeeccCcceEEEeccCch
Confidence 3222 44 788888766778999999999999996554
No 147
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=2.3e-22 Score=215.40 Aligned_cols=232 Identities=16% Similarity=0.250 Sum_probs=203.1
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEE
Q 001295 809 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 887 (1106)
Q Consensus 809 ~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~ 887 (1106)
|...+.++..-..++.+++|+ |..+-+|.+.....+..+.+|..+|.++.|++ +..+|+.|+.+|+|++||+..++.+
T Consensus 27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDleeAk~v 105 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEEAKIV 105 (825)
T ss_pred hhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCc-chhhhcccccCCceeeeehhhhhhh
Confidence 777788888777788899998 78888999988778888999999999999999 8999999999999999999999999
Q ss_pred EEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCe
Q 001295 888 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ 966 (1106)
Q Consensus 888 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~ 966 (1106)
++|.||...+.+|.|+|-+.+.|+|+.|..+++||++... +.....+|. ..+..+.|+|+|++++.+ .|..
T Consensus 106 rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G-----c~~~~~s~~---~vv~~l~lsP~Gr~v~~g~ed~t 177 (825)
T KOG0267|consen 106 RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG-----CSHTYKSHT---RVVDVLRLSPDGRWVASGGEDNT 177 (825)
T ss_pred hhhhccccCcceeeeccceEEeccccccccceehhhhccC-----ceeeecCCc---ceeEEEeecCCCceeeccCCcce
Confidence 9999999999999999999999999999999999998533 445555554 378899999999999995 6699
Q ss_pred EEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEE
Q 001295 967 LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1046 (1106)
Q Consensus 967 v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1046 (1106)
++|||+..|+....|. .|...|.++.|.|..-+|++|+.|++|++||+++.+.+...... ..+ |. +..
T Consensus 178 vki~d~~agk~~~ef~--~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~---~~~-----v~--~~~ 245 (825)
T KOG0267|consen 178 VKIWDLTAGKLSKEFK--SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE---TDG-----VR--SLA 245 (825)
T ss_pred eeeecccccccccccc--cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc---cCC-----ce--eee
Confidence 9999999999999987 78999999999999999999999999999999999988776522 222 44 899
Q ss_pred EeCCCCCEEEEEeCCC
Q 001295 1047 AHPQEPNEFALGLSDG 1062 (1106)
Q Consensus 1047 ~~~~d~~~l~t~~~Dg 1062 (1106)
|.| |+..+.+|..+.
T Consensus 246 fn~-~~~~~~~G~q~s 260 (825)
T KOG0267|consen 246 FNP-DGKIVLSGEQIS 260 (825)
T ss_pred ecC-CceeeecCchhh
Confidence 999 688888776544
No 148
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=2.5e-22 Score=215.15 Aligned_cols=233 Identities=12% Similarity=0.302 Sum_probs=204.6
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 428 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 428 (1106)
|...|.|+..-..++ ++++|+.|..+-+|.+.....+. .+.+|+.+|.++.|+++..+|+
T Consensus 27 hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~-------------------S~~~hespIeSl~f~~~E~Lla 86 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAIT-------------------SLTGHESPIESLTFDTSERLLA 86 (825)
T ss_pred hhhhhceeeeeccce-eeccCCCceeeccccccCCchhh-------------------eeeccCCcceeeecCcchhhhc
Confidence 888999999867777 69999999999999886543332 2789999999999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEe
Q 001295 429 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 508 (1106)
Q Consensus 429 s~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 508 (1106)
+|+.+|+|++||++.++.++ +|.||...+..+.|+|-+. ++++|+.|+.+++||++...|.+.+.+|...|.++.
T Consensus 87 agsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR 161 (825)
T ss_pred ccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence 99999999999999988777 7999999999999999999 789999999999999999999999999999999999
Q ss_pred ccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCC
Q 001295 509 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 588 (1106)
Q Consensus 509 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 588 (1106)
|. ++|.++++|+.|.++++||...++....|..|...+.++.|.|.. -.++.|+.|+
T Consensus 162 ls--P~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e---------------------~Lla~Gs~d~ 218 (825)
T KOG0267|consen 162 LS--PDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLE---------------------VLLAPGSSDR 218 (825)
T ss_pred ec--CCCceeeccCCcceeeeecccccccccccccccccccccccCchh---------------------hhhccCCCCc
Confidence 85 556899999999999999999988888888888777766655544 3678899999
Q ss_pred eEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCC
Q 001295 589 SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 631 (1106)
Q Consensus 589 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 631 (1106)
+|++||+++.+.+...... ...|.+.+|+|++..+++|...
T Consensus 219 tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 219 TVRFWDLETFEVISSGKPE--TDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred eeeeeccceeEEeeccCCc--cCCceeeeecCCceeeecCchh
Confidence 9999999998888777655 5689999999999999988764
No 149
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=2.9e-21 Score=208.87 Aligned_cols=273 Identities=16% Similarity=0.257 Sum_probs=204.2
Q ss_pred CceeeEecCCCCCCccceecccCccccccceEEEEEcC-CCceEEEeecCceEEEeeccccccCCCCccccccCccccCC
Q 001295 716 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTN-SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQP 794 (1106)
Q Consensus 716 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~ 794 (1106)
..++++.+........+..-.-...-..-.+..+.|.. +.++|++++.+|.|.+||+.....
T Consensus 60 s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r----------------- 122 (839)
T KOG0269|consen 60 SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR----------------- 122 (839)
T ss_pred cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcccc-----------------
Confidence 45566666654443333321100000112334455553 467889999999999999874211
Q ss_pred CCCCccccccCCCCCCCCeeEEEEecCC-CEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeC
Q 001295 795 PSGIMMTNDVTDSNPEEAVPCFALSKND-SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD 872 (1106)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~v~~l~~s~~~-~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~ 872 (1106)
...+. .+. +|...+.++.|++.. .+|++|+ ||+|++||++..+...++.+....|+.+.|+|..+..++++.+
T Consensus 123 --nk~l~-~f~--EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~d 197 (839)
T KOG0269|consen 123 --NKLLT-VFN--EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHD 197 (839)
T ss_pred --chhhh-Hhh--hhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecC
Confidence 11111 122 399999999999865 5777888 9999999999999889999888999999999988999999999
Q ss_pred CCcEEEEEeec-ceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEE
Q 001295 873 DSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 951 (1106)
Q Consensus 873 dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 951 (1106)
.|.+++||++. .++...+.+|.++|.++.|+|++.+||+||.|++|+|||+.+.+......++.. ..+..+.
T Consensus 198 sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi-------apv~rVk 270 (839)
T KOG0269|consen 198 SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTI-------APVGRVK 270 (839)
T ss_pred CceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeec-------ceeeeee
Confidence 99999999986 467788999999999999999999999999999999999998666554444433 4689999
Q ss_pred EcCCCcEEE-E---EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECC-CCCEEEEEEcCCeEEEEEcCC
Q 001295 952 FHQDQIHFL-V---VHETQLAIFETTKLECVKQWVPRESSAPITHATFSC-DSQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus 952 ~s~dg~~l~-~---~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~-d~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
|-|+..+.+ + ..|..|+|||++..-..... ...|...++.++|.. |...|.+++.||+|..=.+.+
T Consensus 271 WRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t-~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 271 WRPARSYHLATCSMVVDTSVHVWDVRRPYIPYAT-FLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred eccCccchhhhhhccccceEEEEeecccccccee-eeccCccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence 999876554 4 37889999999865443322 237899999999966 566799999999887655443
No 150
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=1.9e-20 Score=190.66 Aligned_cols=259 Identities=19% Similarity=0.289 Sum_probs=195.7
Q ss_pred CCCCcEEEEEecCCC-eEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc-CCCE
Q 001295 349 QGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSL 426 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~-~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 426 (1106)
+...|++++|+|... .++|+|...|.|-+||+.+.+......+ .+..|.++|.++.|+| +...
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~---------------~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVY---------------LFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceE---------------EeccCCccccceEecCCChhh
Confidence 789999999999876 7899999999999999964433322111 4789999999999999 6778
Q ss_pred EEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCce-eEEEeccCCCeE
Q 001295 427 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QYIFEGHEAPVY 505 (1106)
Q Consensus 427 las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~h~~~v~ 505 (1106)
+.+.|.||+|++-|++++.. ..+..+......+..+.|+.+.. .++.+..=|...+||.+++.. ...+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 88999999999999997642 22223433556788899998888 677777777999999997655 666777999999
Q ss_pred EEeccccCCceEEEEEecCCeEEEEeCCCCCcee----EeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEE
Q 001295 506 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV----DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 581 (1106)
Q Consensus 506 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l 581 (1106)
+++++|-.. .+|+|+|.|++.+|||++...... ....|.. .|.+..|+|.+..|
T Consensus 327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrr---------------------sV~sAyFSPs~gtl 384 (498)
T KOG4328|consen 327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRR---------------------SVNSAYFSPSGGTL 384 (498)
T ss_pred eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccc---------------------eeeeeEEcCCCCce
Confidence 999988765 799999999999999998754432 2223334 44455555555569
Q ss_pred EEEECCCeEEEEECC----CcceeEEEccCCCC---CCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhh
Q 001295 582 LAAGDDFSIKFWDMD----SVQLLTSIDADGGL---PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT 648 (1106)
Q Consensus 582 ~~~~~d~~i~iwd~~----~~~~~~~~~~~~~~---~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 648 (1106)
++.+.|..|+|||.. ...+..++...... -......|.|+..++++|-.-..|-|+|-..+ +.+..
T Consensus 385 ~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~-q~v~e 457 (498)
T KOG4328|consen 385 LTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG-QMVCE 457 (498)
T ss_pred EeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC-EEeee
Confidence 999999999999983 33344444322111 12346789999999999999999999998777 43333
No 151
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.86 E-value=2.5e-20 Score=184.95 Aligned_cols=270 Identities=15% Similarity=0.240 Sum_probs=195.2
Q ss_pred CCcceeeeccCCCCcEEEEEecCC-CeEEEEEeccCcEEEEecCCccee-EEeeeeeeccCcCCccccccccCCCCcCeE
Q 001295 339 LPKTVTRTLNQGSSPMSMDFHPVQ-QTLLLVGTNVGDIGLWEVGSRERL-VLRNFKVWDLGACSMPLQAALVKDPGVSVN 416 (1106)
Q Consensus 339 ~~~~~~~~~~h~~~v~~~~~sp~g-~~llatg~~dg~i~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~ 416 (1106)
.|........|.+.|+.+.-++-| ..+.|+=+..|.|.|||+...-.. ..-.+.+-+ ....+...+.+|.+.=+
T Consensus 140 ~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy 215 (440)
T KOG0302|consen 140 KPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGY 215 (440)
T ss_pred cccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCccce
Confidence 455556667799999999999875 345667777899999998542111 000000001 11112225789999999
Q ss_pred EEEEcc-CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC---c
Q 001295 417 RVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---A 492 (1106)
Q Consensus 417 ~l~~sp-dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~ 492 (1106)
+++||| ....|++|..-+.|++|...+|........+.+|+..|-.++|||..+. +|+|||-||+|+|||++.+ .
T Consensus 216 ~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~ 294 (440)
T KOG0302|consen 216 GLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKA 294 (440)
T ss_pred eeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccc
Confidence 999999 3335778888888999999988765444467789999999999998887 8999999999999999987 3
Q ss_pred eeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCC---CceeEeeCCCCeeEEEEEecCCCeEEEeeeccce
Q 001295 493 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 569 (1106)
Q Consensus 493 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i 569 (1106)
++.+ +.|.+.|+.|.|+... .+|++|+.||+++|||++.. .++..++.|..+|+++.|+|...
T Consensus 295 ~~~~-kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~----------- 360 (440)
T KOG0302|consen 295 AVST-KAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHED----------- 360 (440)
T ss_pred eeEe-eccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccC-----------
Confidence 4444 7899999999997554 49999999999999999864 34457777888888887777654
Q ss_pred eEEEEcCCCCEEEEEECCCeEEEEECCCcce----------------eEEEccCCCCCCcCeEEEccC-CCEEEEEeCCC
Q 001295 570 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL----------------LTSIDADGGLPASPRIRFNKD-GCLLAVSTNDN 632 (1106)
Q Consensus 570 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----------------~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg 632 (1106)
..|++++.|.+|.+||+....- -+.+-.|.+...+..+.|+++ ..++++.+.||
T Consensus 361 ---------s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 361 ---------SVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred ---------ceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 3588899999999999853221 011222333456788999985 44666666665
Q ss_pred cEEEE
Q 001295 633 GIKIL 637 (1106)
Q Consensus 633 ~i~iw 637 (1106)
. .||
T Consensus 432 f-nVf 435 (440)
T KOG0302|consen 432 F-NVF 435 (440)
T ss_pred e-eEE
Confidence 4 444
No 152
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.8e-21 Score=210.46 Aligned_cols=244 Identities=13% Similarity=0.220 Sum_probs=188.5
Q ss_pred CcEEEEEecCCCeEEEEEeccCcEEEEecCCc---ceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc-CCCEE
Q 001295 352 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR---ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLF 427 (1106)
Q Consensus 352 ~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 427 (1106)
.+..|+|+..-..+|||++..|.|.+||+... +.+ ..+..|+..|.++.|++ ...+|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l-------------------~~f~EH~Rs~~~ldfh~tep~il 149 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLL-------------------TVFNEHERSANKLDFHSTEPNIL 149 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhh-------------------hHhhhhccceeeeeeccCCccEE
Confidence 45677787655558999999999999999762 222 14789999999999999 67789
Q ss_pred EEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC-CceeEEEeccCCCeEE
Q 001295 428 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQYIFEGHEAPVYS 506 (1106)
Q Consensus 428 as~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~ 506 (1106)
++||.||+|++||++..+-.. ++.+....|..++|+|...+ .|+++.+.|.+.+||++. .++...+..|.++|.+
T Consensus 150 iSGSQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c 225 (839)
T KOG0269|consen 150 ISGSQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLC 225 (839)
T ss_pred EecCCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEE
Confidence 999999999999999876544 57778899999999997666 899999999999999985 4567789999999999
Q ss_pred EeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeC-CCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEE
Q 001295 507 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 585 (1106)
Q Consensus 507 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 585 (1106)
+.|+| ++.+|+|||.|++|+|||+........... ...++..+.|-|+.. ..|++++
T Consensus 226 ~nwhP--nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~--------------------~hLAtcs 283 (839)
T KOG0269|consen 226 LNWHP--NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARS--------------------YHLATCS 283 (839)
T ss_pred EeecC--CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCcc--------------------chhhhhh
Confidence 99988 558999999999999999986544332222 223455555555443 2355543
Q ss_pred --CCCeEEEEECCCc-ceeEEEccCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEccCC
Q 001295 586 --DDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 586 --~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
.|-.|+|||++.. -+..++..| ...++.++|.. |...+.+++.||++..-.++++
T Consensus 284 mv~dtsV~VWDvrRPYIP~~t~~eH--~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 284 MVVDTSVHVWDVRRPYIPYATFLEH--TDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ccccceEEEEeeccccccceeeecc--CccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 5889999999754 344555544 55788999976 6677888888888765544444
No 153
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=6.8e-20 Score=192.23 Aligned_cols=322 Identities=14% Similarity=0.294 Sum_probs=231.9
Q ss_pred EEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCC--EEEEEeCCCcEEEE
Q 001295 560 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC--LLAVSTNDNGIKIL 637 (1106)
Q Consensus 560 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iw 637 (1106)
++.|| .+.+.++..+|.|.+|++|+.||+|+||.+.+|.+++++...+ .|.|++|+|.+. .||++..+ .+.|.
T Consensus 395 vyrGH-tg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~---~I~~vaw~P~~~~~vLAvA~~~-~~~iv 469 (733)
T KOG0650|consen 395 VYRGH-TGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS---EIRSVAWNPLSDLCVLAVAVGE-CVLIV 469 (733)
T ss_pred eEecc-CCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc---eeEEEEecCCCCceeEEEEecC-ceEEe
Confidence 33444 4588899999999999999999999999999999999998765 499999999654 45555544 46666
Q ss_pred EccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCcccc----cc
Q 001295 638 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT----EE 713 (1106)
Q Consensus 638 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~ 713 (1106)
+..-|.+..... + ...+.+ ..
T Consensus 470 np~~G~~~e~~~---t----------------------------------------------------~ell~~~~~~~~ 494 (733)
T KOG0650|consen 470 NPIFGDRLEVGP---T----------------------------------------------------KELLASAPNESE 494 (733)
T ss_pred Cccccchhhhcc---h----------------------------------------------------hhhhhcCCCccC
Confidence 654442111100 0 001111 11
Q ss_pred CCCceeeEecCCCCCCc--cceecccCccccccceEEEEEcCCCceEEEeecC---ceEEEeeccccccCCCCccccccC
Q 001295 714 SNDKSKVWKLTELSEPN--QCRSLRLPENLRATKISRLIFTNSGNAILALASN---AIHLLWKWQRTERNSSGKATASVA 788 (1106)
Q Consensus 714 ~d~~i~vw~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~ 788 (1106)
-+..+..|.-....+.. .+..+. |...|..+.|+..|.+|++...+ ..|.|+.+.....
T Consensus 495 p~~~~~~W~~~~~~e~~~~v~~~I~-----~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s----------- 558 (733)
T KOG0650|consen 495 PDAAVVTWSRASLDELEKGVCIVIK-----HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS----------- 558 (733)
T ss_pred CcccceeechhhhhhhccceEEEEe-----cCCccceeeeecCCceEEEeccCCCcceEEEEecccccc-----------
Confidence 23455666654322211 222322 77899999999999999988875 5677776653211
Q ss_pred ccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEE
Q 001295 789 PQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA 868 (1106)
Q Consensus 789 ~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la 868 (1106)
. ..+.. ..+.|.++.|.|...+|+++....|+|||+.....+..+......|..++++| .|.-|+
T Consensus 559 --------Q----~PF~k--skG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli 623 (733)
T KOG0650|consen 559 --------Q----SPFRK--SKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLI 623 (733)
T ss_pred --------c----Cchhh--cCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEE
Confidence 1 11211 56778999999999999999999999999999888888887788899999999 888888
Q ss_pred EeeCCCcEEEEEeec-ceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCC
Q 001295 869 IGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD 947 (1106)
Q Consensus 869 ~g~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i 947 (1106)
.|+.|+.+..||+.- .+..++++.|...|++|+|++.-.+++||+.||++.|+.-.-... +++ .
T Consensus 624 ~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~D----l~q---n-------- 688 (733)
T KOG0650|consen 624 LGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYND----LLQ---N-------- 688 (733)
T ss_pred EecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehh----hhc---C--------
Confidence 899999999999975 467888999999999999999999999999999999885221100 000 0
Q ss_pred ceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCCC----CCeeEEEECCCCCEEEEEEcCCeEEEE
Q 001295 948 TRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESS----APITHATFSCDSQLVYACFLDATVCVF 1014 (1106)
Q Consensus 948 ~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~----~~v~~l~~s~d~~~l~t~s~Dg~i~vw 1014 (1106)
- |+ -.++.+ .+|. ..|....|.|..-+|++++.||+|++|
T Consensus 689 ---------p-li---------------VPlK~L--~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 689 ---------P-LI---------------VPLKRL--RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ---------C-ce---------------Eeeeec--cCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 0 00 011111 2443 358999999999999999999999998
No 154
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.4e-19 Score=175.03 Aligned_cols=259 Identities=14% Similarity=0.237 Sum_probs=193.6
Q ss_pred cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc--CCC
Q 001295 348 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGS 425 (1106)
Q Consensus 348 ~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~ 425 (1106)
+|.+-|.|+.|.+.|++ +|+++.|++|+|||......--... .....|.+.|..+.|-+ -|+
T Consensus 11 ~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~~T---------------s~Wrah~~Si~rV~WAhPEfGq 74 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTWSCT---------------SSWRAHDGSIWRVVWAHPEFGQ 74 (361)
T ss_pred CCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCceEEe---------------eeEEecCCcEEEEEecCccccc
Confidence 48899999999999998 9999999999999975443221110 13678999999999987 699
Q ss_pred EEEEEeCCCeEEEEEccC------CceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCcee-----
Q 001295 426 LFGVAYSRHIVQIYSYHG------GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ----- 494 (1106)
Q Consensus 426 ~las~~~d~~v~iwd~~~------~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~----- 494 (1106)
.+|+++.|+++.||.-.. +..-....++......|+++.|.|....+.+++++.||.+|||+.-..--+
T Consensus 75 vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L 154 (361)
T KOG2445|consen 75 VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL 154 (361)
T ss_pred eEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh
Confidence 999999999999997521 112223446777788999999999887779999999999999987653322
Q ss_pred -EEEe-------ccCCCeEEEeccccCC-ceEEEEEecC-----CeEEEEeCCCCCc----eeEeeCCCCeeEEEEEecC
Q 001295 495 -YIFE-------GHEAPVYSVCPHHKEN-IQFIFSTALD-----GKIKAWLYDNLGS----RVDYEAPGRWCTTMAYSAD 556 (1106)
Q Consensus 495 -~~~~-------~h~~~v~~~~~~~~~~-~~~l~s~~~d-----g~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~ 556 (1106)
..++ .+..+-.|+.|+++.- ..+|+.|+.+ +.+.||....... ..++..+..+|+.++|.|+
T Consensus 155 q~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 155 QHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred hhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 2232 4666778888876532 2467777665 4889998766542 2356778889999999987
Q ss_pred CCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcc-----------------eeEEEc-cCCCCCCcCeEEE
Q 001295 557 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-----------------LLTSID-ADGGLPASPRIRF 618 (1106)
Q Consensus 557 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~v~~ 618 (1106)
--+-+ ..|++++.|| |+||++.... .+..+. ..+|...|..+.|
T Consensus 235 ~Gr~y-----------------~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~w 296 (361)
T KOG2445|consen 235 IGRSY-----------------HLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRW 296 (361)
T ss_pred cCCce-----------------eeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEE
Confidence 54322 2588899999 9999987311 112221 2344568999999
Q ss_pred ccCCCEEEEEeCCCcEEEEEcc
Q 001295 619 NKDGCLLAVSTNDNGIKILATS 640 (1106)
Q Consensus 619 s~~~~~l~~~~~dg~i~iwd~~ 640 (1106)
+-.|..|++.+.||.+|+|...
T Consensus 297 NmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 297 NMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eeeeeEEeecCCCceeeehhhh
Confidence 9999999999999999999653
No 155
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=3.2e-20 Score=188.51 Aligned_cols=260 Identities=12% Similarity=0.158 Sum_probs=189.5
Q ss_pred CCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccC---cCCccccccccCCCCcCeEEEEEccC-CCEEEEEeCCCeEE
Q 001295 362 QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG---ACSMPLQAALVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQ 437 (1106)
Q Consensus 362 g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~---~~~~~~~~~~~~~h~~~V~~l~~spd-g~~las~~~d~~v~ 437 (1106)
|. ++|.|+.|..|.|||+.--..+.- .+.+-... ............+|+..|.+++|+.+ ...||+||.|.+|+
T Consensus 192 gN-yvAiGtmdp~IeIWDLDI~d~v~P-~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~ 269 (463)
T KOG0270|consen 192 GN-YVAIGTMDPEIEIWDLDIVDAVLP-CVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVK 269 (463)
T ss_pred cc-eEEEeccCceeEEecccccccccc-ceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEE
Confidence 56 499999999999999864221110 00000000 00000112235689999999999984 56789999999999
Q ss_pred EEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCcee-EEEeccCCCeEEEeccccCCce
Q 001295 438 IYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-YIFEGHEAPVYSVCPHHKENIQ 516 (1106)
Q Consensus 438 iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~ 516 (1106)
+||+.+|++.. ++..|.+.|.++.|.|.... +|++|+.|++|.+.|.+..... ..++ ..+.|..++|.+... .
T Consensus 270 lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se-~ 343 (463)
T KOG0270|consen 270 LWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSE-N 343 (463)
T ss_pred EEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCc-e
Confidence 99999998766 57789999999999998877 8999999999999999853332 2222 457899999987655 6
Q ss_pred EEEEEecCCeEEEEeCCCC-CceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEEC
Q 001295 517 FIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM 595 (1106)
Q Consensus 517 ~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 595 (1106)
.++++..||+|+-+|++.. +++.++..|...|.+++++..-. +.+++++.|+.|++|++
T Consensus 344 ~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p--------------------~~l~t~s~d~~Vklw~~ 403 (463)
T KOG0270|consen 344 SFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTP--------------------GLLSTASTDKVVKLWKF 403 (463)
T ss_pred eEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCC--------------------cceeeccccceEEEEee
Confidence 7888999999999999987 67778999999999998877654 35888999999999998
Q ss_pred CCcceeEEEccCCCCCCcCeEEEccCC-CEEEEEeCCCcEEEEEccCCchhhhhh
Q 001295 596 DSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRTF 649 (1106)
Q Consensus 596 ~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~ 649 (1106)
............-..+...|.++.|+- -.++.|+..+.++|||+.+.....+.|
T Consensus 404 ~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~kaF 458 (463)
T KOG0270|consen 404 DVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRKAF 458 (463)
T ss_pred cCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHHHhh
Confidence 754442222211112345677777754 467778888889999998874444433
No 156
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=2.2e-17 Score=192.53 Aligned_cols=371 Identities=25% Similarity=0.416 Sum_probs=270.1
Q ss_pred eeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcc-eeEEeeeeeeccCcCCccccccccCCCC-cCeEEEEE-c
Q 001295 345 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE-RLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIW-S 421 (1106)
Q Consensus 345 ~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~V~~l~~-s 421 (1106)
....|...|.++.|.+.+.. ++.++.|+.+.+|+...+. .... +.++. ..+..+.+ +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~ 119 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGEL-LLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSS 119 (466)
T ss_pred eeeeccceEEEEEECCCCcE-EEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEEC
Confidence 34559999999999999995 8888889999999998876 3221 23322 46777777 8
Q ss_pred cCCC-EEEEEeC-CCeEEEEEccC-CceeeeeeeeccccCCeeEEEEcCCCCceEEEEecC-CCcEEEEeCCCCceeEEE
Q 001295 422 PDGS-LFGVAYS-RHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIF 497 (1106)
Q Consensus 422 pdg~-~las~~~-d~~v~iwd~~~-~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~ 497 (1106)
+++. +++..+. |+.+.+|+... ..... .+..|...|..++|+|++. .+++++. |+.+++|++..+..+..+
T Consensus 120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (466)
T COG2319 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL 194 (466)
T ss_pred CCcceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence 8888 5555444 89999999987 44333 5778999999999999999 6788875 999999999999999999
Q ss_pred eccCCCeEEEeccccCCce-EEEEEecCCeEEEEeCCCCCcee-EeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEc
Q 001295 498 EGHEAPVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 575 (1106)
Q Consensus 498 ~~h~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~ 575 (1106)
.+|...|.++.|. +++. .+++++.|+.|++||........ .+..+.... .. .|+
T Consensus 195 ~~~~~~v~~~~~~--~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~---------------------~~~ 250 (466)
T COG2319 195 AGHTDPVSSLAFS--PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VS---------------------SFS 250 (466)
T ss_pred ccCCCceEEEEEc--CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eE---------------------eEC
Confidence 9999999999997 4444 55566999999999877444443 234333322 11 455
Q ss_pred CCCCEEEEEECCCeEEEEECCCcce-eEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhccccc
Q 001295 576 TTKNRFLAAGDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY 654 (1106)
Q Consensus 576 ~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 654 (1106)
+++..+++++.|+.+++|+...... +..+..+ ...+.++.|+|++..+++++.|+.+.+|+..+... .....
T Consensus 251 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~---- 323 (466)
T COG2319 251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH--SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL-LSSLT---- 323 (466)
T ss_pred CCCCEEEEecCCCcEEEeeecCCCcEEEEEecC--CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce-EEEee----
Confidence 5555788999999999999987665 4444333 55789999999888888899898899997655410 00000
Q ss_pred ccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCcccee
Q 001295 655 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS 734 (1106)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~ 734 (1106)
T Consensus 324 -------------------------------------------------------------------------------- 323 (466)
T COG2319 324 -------------------------------------------------------------------------------- 323 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCee
Q 001295 735 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP 814 (1106)
Q Consensus 735 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~ 814 (1106)
.. .|...+.
T Consensus 324 ----~~-------------------------------------------------------------------~~~~~~~ 332 (466)
T COG2319 324 ----LK-------------------------------------------------------------------GHEGPVS 332 (466)
T ss_pred ----ec-------------------------------------------------------------------ccCCceE
Confidence 00 0222344
Q ss_pred EEEEecCCCEEEEE-e-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEE-eeCCCcEEEEEeecceEEEEec
Q 001295 815 CFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI-GMDDSSIQIYNVRVDEVKSKLK 891 (1106)
Q Consensus 815 ~l~~s~~~~~l~~~-s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~-g~~dg~v~iwd~~~~~~~~~l~ 891 (1106)
.+.+.+++..++.+ . |+.+.+|+.............. .+..+.+++ + ..++. +..++.+.+|+...........
T Consensus 333 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (466)
T COG2319 333 SLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLD 409 (466)
T ss_pred EEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeecc
Confidence 45552222344444 3 6677778877665222222222 288899988 6 55554 8899999999999888777776
Q ss_pred CcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCC
Q 001295 892 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 925 (1106)
Q Consensus 892 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~ 925 (1106)
.+...+....+++++..+++++.++++++|+..+
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 410 GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 5547899999999999999999999999999877
No 157
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=1.2e-19 Score=177.03 Aligned_cols=299 Identities=15% Similarity=0.197 Sum_probs=204.3
Q ss_pred ccccceEEEEEcC----CCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEE
Q 001295 741 LRATKISRLIFTN----SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 816 (1106)
Q Consensus 741 ~~~~~i~~~~~s~----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l 816 (1106)
.|...|..++|.+ +...+++......+.+|+..... .+ +.+.. .....+......+
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~-----------~i--------r~lq~-y~D~d~~Esfytc 95 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG-----------GI--------RLLQS-YADEDHDESFYTC 95 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc-----------ce--------eeeee-ccCCCCCcceEEE
Confidence 4677888999874 33334444444567777654211 00 11111 1112366667777
Q ss_pred EEecC----CCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEe-
Q 001295 817 ALSKN----DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL- 890 (1106)
Q Consensus 817 ~~s~~----~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l- 890 (1106)
+|+-| ..++|+|+ -|.|+|.|..++++...+.+|...|..+.|.|++.+++++++.|.+|++|++++..++..+
T Consensus 96 sw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG 175 (385)
T KOG1034|consen 96 SWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG 175 (385)
T ss_pred EEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec
Confidence 77654 33677776 7999999999999999999999999999999988899999999999999999999999887
Q ss_pred --cCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCccccccee-------------ecccCCCCC-------CCCCCc
Q 001295 891 --KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF-------------LQIPTGRTP-------TAQSDT 948 (1106)
Q Consensus 891 --~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~-------------~~~~~~~~~-------~~~~i~ 948 (1106)
.||.+.|.++.|+++|.+|+|+|.|.+|++|++...+...... ......+.+ ....|-
T Consensus 176 G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 176 GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence 5699999999999999999999999999999998532211000 000000100 001122
Q ss_pred eEEEcCCCcEEEE-EeCCeEEEEecC-CceEe-------------eecccCCCCCCeeEE--EECCCCCEEEEEEcCCeE
Q 001295 949 RVQFHQDQIHFLV-VHETQLAIFETT-KLECV-------------KQWVPRESSAPITHA--TFSCDSQLVYACFLDATV 1011 (1106)
Q Consensus 949 ~~~~s~dg~~l~~-~~d~~v~i~d~~-~~~~~-------------~~~~~~~h~~~v~~l--~~s~d~~~l~t~s~Dg~i 1011 (1106)
++.| -|.++++ +.++.|..|..- -.+.+ ..+.. ....|+-| +|.|-+++||.|...|.|
T Consensus 256 Cvrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~--~~c~iWfirf~~d~~~~~la~gnq~g~v 331 (385)
T KOG1034|consen 256 CVRW--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDY--PMCDIWFIRFAFDPWQKMLALGNQSGKV 331 (385)
T ss_pred HHHH--HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEecc--CccceEEEEEeecHHHHHHhhccCCCcE
Confidence 2222 1567777 788899999872 22221 11211 13344444 556778899999999999
Q ss_pred EEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeec
Q 001295 1012 CVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1070 (1106)
Q Consensus 1012 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~ 1070 (1106)
++||+...+....- .+.+...+..|. ..+|+. |+.+|+..++|++|.-||..
T Consensus 332 ~vwdL~~~ep~~~t----tl~~s~~~~tVR--Q~sfS~-dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 332 YVWDLDNNEPPKCT----TLTHSKSGSTVR--QTSFSR-DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEECCCCCCccCc----eEEeccccceee--eeeecc-cCcEEEEEeCCCcEEEEEee
Confidence 99999887764211 122222233355 788888 79999999999999999864
No 158
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.84 E-value=4.2e-19 Score=178.38 Aligned_cols=171 Identities=20% Similarity=0.241 Sum_probs=139.9
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 428 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 428 (1106)
...+|..+.|.+++...+|||+.|..|+||-++.++.-.. .....-...|..|...|+++.|+|+|++||
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~----------~~~V~y~s~Ls~H~~aVN~vRf~p~gelLA 81 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG----------DMKVEYLSSLSRHTRAVNVVRFSPDGELLA 81 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC----------ceeEEEeecccCCcceeEEEEEcCCcCeee
Confidence 3578999999998875699999999999999876543220 000111225899999999999999999999
Q ss_pred EEeCCCeEEEEEcc--------C-----CceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeE
Q 001295 429 VAYSRHIVQIYSYH--------G-----GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 495 (1106)
Q Consensus 429 s~~~d~~v~iwd~~--------~-----~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 495 (1106)
+|+.+|.|.+|... + .+.......+.+|...|..++|+||+. ++++++.|.++++||+..|+.+.
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeEe
Confidence 99999999999876 3 121223456789999999999999999 89999999999999999999999
Q ss_pred EEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCC
Q 001295 496 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533 (1106)
Q Consensus 496 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 533 (1106)
.+.+|...|..++|.+-. +++++-+.|...+.+.+.
T Consensus 160 ~~~dh~~yvqgvawDpl~--qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWDPLN--QYVASKSSDRHPEGFSAK 195 (434)
T ss_pred eccccccccceeecchhh--hhhhhhccCcccceeeee
Confidence 999999999999996654 789999988866666544
No 159
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.84 E-value=4.8e-19 Score=180.48 Aligned_cols=317 Identities=13% Similarity=0.149 Sum_probs=225.0
Q ss_pred eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCC----ceeEeeCCCCeeEEEEEecCCCeEEE
Q 001295 487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG----SRVDYEAPGRWCTTMAYSADGTRTYQ 562 (1106)
Q Consensus 487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~~~~ 562 (1106)
|+.+-......+-+.++|++++|+|..+.+++++|..-|.|-+||+.+.+ ....+..|..+|.++.|+|...
T Consensus 172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~---- 247 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT---- 247 (498)
T ss_pred ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh----
Confidence 33344445566668899999999999998899999999999999996433 3345666777777777777654
Q ss_pred eeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 563 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 563 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
..+++.+.||+|++-|+..+.....+........+.++.|+.+...++.+..=|.+.+||.+++
T Consensus 248 ----------------s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~ 311 (498)
T KOG4328|consen 248 ----------------SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTD 311 (498)
T ss_pred ----------------hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecC
Confidence 4689999999999999987654444443223345677888888888888888889999999988
Q ss_pred chhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEe
Q 001295 643 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 722 (1106)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~ 722 (1106)
...+..++-|...+... ++.|.. ...+++++.|++.++||
T Consensus 312 ~s~~~~~~lh~kKI~sv------~~NP~~----------------------------------p~~laT~s~D~T~kIWD 351 (498)
T KOG4328|consen 312 GSEYENLRLHKKKITSV------ALNPVC----------------------------------PWFLATASLDQTAKIWD 351 (498)
T ss_pred Cccchhhhhhhccccee------ecCCCC----------------------------------chheeecccCcceeeee
Confidence 66666666666543322 333332 56789999999999999
Q ss_pred cCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccc
Q 001295 723 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 802 (1106)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 802 (1106)
+......... .+. ...|...|.+..|||.+-.|++.+.|..|+|||..- +.-|+...+.....
T Consensus 352 ~R~l~~K~sp-~ls--t~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~--------------~sa~~~p~~~I~Hn 414 (498)
T KOG4328|consen 352 LRQLRGKASP-FLS--TLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC--------------ISAKDEPLGTIPHN 414 (498)
T ss_pred hhhhcCCCCc-cee--cccccceeeeeEEcCCCCceEeeccCCceEEeeccc--------------ccccCCccceeecc
Confidence 9876654431 111 134899999999999988899999999999998631 11122222222111
Q ss_pred ccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCC-CeeE-EEEecCCCceEEEeeCCCcEEEE
Q 001295 803 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP-AATF-LAFHPQDNNIIAIGMDDSSIQIY 879 (1106)
Q Consensus 803 ~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~-~v~~-l~~s~~d~~~la~g~~dg~v~iw 879 (1106)
...+ .--...-.+|.|+..++++|. -..|-|+|-..++.+..+..... .|.+ ..|+|-+..++|-|+..|.|+||
T Consensus 415 ~~t~--RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 415 NRTG--RWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred Cccc--ccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence 1000 001123468999999999998 67899999999887777654433 4444 57999444466767778899988
Q ss_pred Eee
Q 001295 880 NVR 882 (1106)
Q Consensus 880 d~~ 882 (1106)
--+
T Consensus 493 t~k 495 (498)
T KOG4328|consen 493 TNK 495 (498)
T ss_pred ecC
Confidence 644
No 160
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=2.7e-19 Score=183.28 Aligned_cols=216 Identities=17% Similarity=0.266 Sum_probs=170.1
Q ss_pred EEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEE
Q 001295 748 RLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS 827 (1106)
Q Consensus 748 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~ 827 (1106)
|++......++++++..++|+|||++. +++...+++ |...|+++.++-...+||+
T Consensus 84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-----------------------kl~hr~lkd--h~stvt~v~YN~~DeyiAs 138 (673)
T KOG4378|consen 84 CVACASQSLYEISGGQSGCVKIWDLRA-----------------------KLIHRFLKD--HQSTVTYVDYNNTDEYIAS 138 (673)
T ss_pred HHhhhhcceeeeccCcCceeeehhhHH-----------------------HHHhhhccC--CcceeEEEEecCCcceeEE
Confidence 333344457899999999999998752 223333555 8999999999999999999
Q ss_pred Ee-CCeEEEEEcCCCceeeeecCC-CCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEe-cCcccCeeEEEEec
Q 001295 828 AS-GGKISLFNMMTFKTMATFMPP-PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRITGLAFSH 904 (1106)
Q Consensus 828 ~s-dg~i~vwd~~~~~~~~~~~~~-~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~s~ 904 (1106)
++ .|.|.|..+.++....+|... ...|.-+.|+|-...+|.+++.+|.|.+||+.....+..+ ..|+.+...++|+|
T Consensus 139 vs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfsp 218 (673)
T KOG4378|consen 139 VSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSP 218 (673)
T ss_pred eccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecC
Confidence 99 688999999998887777654 3456689999955677889999999999999987766554 56999999999999
Q ss_pred CC-CEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceE-eeec
Q 001295 905 AL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC-VKQW 981 (1106)
Q Consensus 905 d~-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~-~~~~ 981 (1106)
.. .+||+.|.|..|.+||+...+... ++ ... .+...++|+++|.+|++| ..|.|..||++..+. +...
T Consensus 219 sne~l~vsVG~Dkki~~yD~~s~~s~~--~l--~y~-----~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~ 289 (673)
T KOG4378|consen 219 SNEALLVSVGYDKKINIYDIRSQASTD--RL--TYS-----HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVR 289 (673)
T ss_pred CccceEEEecccceEEEeecccccccc--ee--eec-----CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEe
Confidence 65 678899999999999998633211 11 112 256899999999999996 889999999987653 4444
Q ss_pred ccCCCCCCeeEEEECCCC
Q 001295 982 VPRESSAPITHATFSCDS 999 (1106)
Q Consensus 982 ~~~~h~~~v~~l~~s~d~ 999 (1106)
. .|...|++++|-|..
T Consensus 290 s--ah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 290 S--AHDASVTRVAFQPSP 305 (673)
T ss_pred e--ecccceeEEEeeecc
Confidence 3 788999999997764
No 161
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=1.2e-16 Score=186.32 Aligned_cols=368 Identities=23% Similarity=0.398 Sum_probs=271.5
Q ss_pred eccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCc-eeEEEeccCC-CeEEEeccccCCce-EEEEEec-CCeEE
Q 001295 453 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHEA-PVYSVCPHHKENIQ-FIFSTAL-DGKIK 528 (1106)
Q Consensus 453 l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~h~~-~v~~~~~~~~~~~~-~l~s~~~-dg~i~ 528 (1106)
+..|...+..+.|.+.+. .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. ..++. .++..+. |+.+.
T Consensus 61 ~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 61 LRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEE
Confidence 567999999999999999 78888899999999998887 6777776443 77777764 44444 5555444 99999
Q ss_pred EEeCCC-CCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEEC-CCeEEEEECCCcceeEEEcc
Q 001295 529 AWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DFSIKFWDMDSVQLLTSIDA 606 (1106)
Q Consensus 529 iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~ 606 (1106)
+|+... ......+..+...+..++|++++. .+++++. |+.+++|+...+..+..+..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGK---------------------LLASGSSLDGTIKLWDLRTGKPLSTLAG 196 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCCC---------------------EEEecCCCCCceEEEEcCCCceEEeecc
Confidence 999987 566666777777777777666665 5777775 99999999999888888876
Q ss_pred CCCCCCcCeEEEccCCC-EEEEEeCCCcEEEEEccCCchhhh-hhcccccccccCCCCCCCCcCchhhhHhhhhcccccc
Q 001295 607 DGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATSDGIRLLR-TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA 684 (1106)
Q Consensus 607 ~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1106)
+ ...+.+++|+|++. ++++++.|+.+++||...+ .... .+.
T Consensus 197 ~--~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~-~~~~~~~~---------------------------------- 239 (466)
T COG2319 197 H--TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG-KLLRSTLS---------------------------------- 239 (466)
T ss_pred C--CCceEEEEEcCCcceEEEEecCCCcEEEEECCCC-cEEeeecC----------------------------------
Confidence 4 45799999999998 5555589999999965432 1000 000
Q ss_pred cccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecC
Q 001295 685 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN 764 (1106)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 764 (1106)
T Consensus 240 -------------------------------------------------------------------------------- 239 (466)
T COG2319 240 -------------------------------------------------------------------------------- 239 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCce
Q 001295 765 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT 843 (1106)
Q Consensus 765 g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~ 843 (1106)
.|.... ...|++++.++++++ |+.+++|++.....
T Consensus 240 -------------------------------------------~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 240 -------------------------------------------GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred -------------------------------------------CCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence 022222 115666665666555 67777777765543
Q ss_pred -eeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEec--CcccCeeEEEEecCCCEEEEE-cCCCcEE
Q 001295 844 -MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSS-GADSQLC 919 (1106)
Q Consensus 844 -~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~s~-s~Dg~i~ 919 (1106)
...+..|...+.++.|+| ++..+++++.|+.+.+|+..+........ .|...+..+.|.+++..++.+ ..|+.+.
T Consensus 276 ~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 354 (466)
T COG2319 276 LLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR 354 (466)
T ss_pred EEEEEecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEE
Confidence 334456788999999999 77778779999999999998887766665 888889999994333566655 6889999
Q ss_pred EEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE--EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECC
Q 001295 920 VWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFSC 997 (1106)
Q Consensus 920 vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~--~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~ 997 (1106)
+|++.... . ....... ..+..+.+++ ...+.. ..++.+.+|+............ +...+....+++
T Consensus 355 ~~~~~~~~--~---~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 422 (466)
T COG2319 355 LWDLRTGK--P---LKTLEGH----SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDG--HTSRVTSLDFSP 422 (466)
T ss_pred eeecCCCc--e---eEEecCC----ceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccC--CCCcEEEEEECC
Confidence 99998854 1 1111111 1267888888 543443 4788999999999888777652 127999999999
Q ss_pred CCCEEEEEEcCCeEEEEEcCC
Q 001295 998 DSQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus 998 d~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
++.++++++.++++++|+..+
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 423 DGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCcEEEEecCCCcEEEEeccC
Confidence 999999999999999999988
No 162
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=2.2e-19 Score=175.11 Aligned_cols=258 Identities=19% Similarity=0.279 Sum_probs=193.8
Q ss_pred CCCCcEEEEEecC---CCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC-C
Q 001295 349 QGSSPMSMDFHPV---QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-G 424 (1106)
Q Consensus 349 h~~~v~~~~~sp~---g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd-g 424 (1106)
|...-..++|+-| |.-++|.|+.-|.|+|.|+.+++.... +.+|.+.|+.+.|.|+ .
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~-------------------~~ghG~sINeik~~p~~~ 148 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKN-------------------YRGHGGSINEIKFHPDRP 148 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccc-------------------eeccCccchhhhcCCCCC
Confidence 5667778888754 444788888899999999999887763 7899999999999994 5
Q ss_pred CEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCcee----------
Q 001295 425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ---------- 494 (1106)
Q Consensus 425 ~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~---------- 494 (1106)
++++++|.|.+|++|++.+..++..+.-+.||.+.|.++.|+++|. +++|+|.|.++++|++...+..
T Consensus 149 qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd--~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~ 226 (385)
T KOG1034|consen 149 QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGD--RIASCGMDHSLKLWRLNVKEFKNKLELSITYS 226 (385)
T ss_pred cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCC--eeeccCCcceEEEEecChhHHhhhhhhhcccC
Confidence 7999999999999999999999988888889999999999999999 8999999999999999732110
Q ss_pred -----------------E-EEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCC-CceeEeeCCCCeeEEE-EEe
Q 001295 495 -----------------Y-IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTM-AYS 554 (1106)
Q Consensus 495 -----------------~-~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~-~~s 554 (1106)
. +-.-|...|-|+.|.. +++++-+-++.|.+|..-.. +............+-+ .|.
T Consensus 227 ~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g----d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~ 302 (385)
T KOG1034|consen 227 PNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG----DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD 302 (385)
T ss_pred CCCccCcCCccccccccccccccccchHHHHHHHh----hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEec
Confidence 0 1234777777887743 58999999999999976321 1111111111111100 000
Q ss_pred cCCCeEEEeeeccceeE--EEEcCCCCEEEEEECCCeEEEEECCCcce--eEEEccCCCCCCcCeEEEccCCCEEEEEeC
Q 001295 555 ADGTRTYQGFRKRSLGV--VQFDTTKNRFLAAGDDFSIKFWDMDSVQL--LTSIDADGGLPASPRIRFNKDGCLLAVSTN 630 (1106)
Q Consensus 555 ~~~~~~~~~~~~~~i~~--~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 630 (1106)
.....++- .+++|-+..|+.|...|.|++||++...+ ..++........|...+|+.||.+|+...+
T Consensus 303 ---------~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcd 373 (385)
T KOG1034|consen 303 ---------YPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCD 373 (385)
T ss_pred ---------cCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeC
Confidence 01113333 35566778899999999999999987665 233433444567899999999999999999
Q ss_pred CCcEEEEEcc
Q 001295 631 DNGIKILATS 640 (1106)
Q Consensus 631 dg~i~iwd~~ 640 (1106)
|++|.-||..
T Consensus 374 d~~Vwrwdrv 383 (385)
T KOG1034|consen 374 DGTVWRWDRV 383 (385)
T ss_pred CCcEEEEEee
Confidence 9999999864
No 163
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=3.3e-19 Score=177.02 Aligned_cols=171 Identities=26% Similarity=0.415 Sum_probs=143.7
Q ss_pred ceeeecc-CCCCcEEEEEec--CCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEE
Q 001295 342 TVTRTLN-QGSSPMSMDFHP--VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 418 (1106)
Q Consensus 342 ~~~~~~~-h~~~v~~~~~sp--~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 418 (1106)
+.+.++. |+.+=.+++||| .|+ |++|..-+.|++|...+|.=... ...+.+|+..|-.+
T Consensus 202 ~Pl~t~~ghk~EGy~LdWSp~~~g~--LlsGDc~~~I~lw~~~~g~W~vd----------------~~Pf~gH~~SVEDL 263 (440)
T KOG0302|consen 202 RPLFTFNGHKGEGYGLDWSPIKTGR--LLSGDCVKGIHLWEPSTGSWKVD----------------QRPFTGHTKSVEDL 263 (440)
T ss_pred CceEEecccCccceeeecccccccc--cccCccccceEeeeeccCceeec----------------Cccccccccchhhh
Confidence 3444444 999999999999 454 78888889999999988643221 11367899999999
Q ss_pred EEcc-CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC---Ccee
Q 001295 419 IWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---GAKQ 494 (1106)
Q Consensus 419 ~~sp-dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~---~~~~ 494 (1106)
+||| ....||+||.||+|+|||++.+.....+. .++|.+.|+.|.|+.+-. +|++|++||+++|||++. ++++
T Consensus 264 qWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVISWnr~~~--lLasG~DdGt~~iwDLR~~~~~~pV 340 (440)
T KOG0302|consen 264 QWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVISWNRREP--LLASGGDDGTLSIWDLRQFKSGQPV 340 (440)
T ss_pred ccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCceeeEEccCCcc--eeeecCCCceEEEEEhhhccCCCcc
Confidence 9999 56689999999999999999985444333 489999999999998888 899999999999999984 6788
Q ss_pred EEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCC
Q 001295 495 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 534 (1106)
Q Consensus 495 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 534 (1106)
..|+-|..+|+++.|+|..+ ..|++++.|..|.+||+..
T Consensus 341 A~fk~Hk~pItsieW~p~e~-s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 341 ATFKYHKAPITSIEWHPHED-SVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eeEEeccCCeeEEEeccccC-ceEEeccCCCcEEEEEeec
Confidence 99999999999999998876 5788899999999999864
No 164
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=1.5e-18 Score=177.87 Aligned_cols=292 Identities=12% Similarity=0.183 Sum_probs=213.2
Q ss_pred cccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceE-EEeecCceEEEeeccccccCCCCcccccc
Q 001295 709 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAI-LALASNAIHLLWKWQRTERNSSGKATASV 787 (1106)
Q Consensus 709 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 787 (1106)
+..++....+++||+........+...+ ....+.++.|......+ +..+.|..+++|.-...
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t-----~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~------------ 67 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQT-----AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK------------ 67 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCC-----CCCcceeeeccccceEEEeecCCceeEEEecccCC------------
Confidence 4445555789999998876655554433 23348888888776532 33445788888864321
Q ss_pred CccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCce
Q 001295 788 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 866 (1106)
Q Consensus 788 ~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~ 866 (1106)
++.+...... ....-.|++......++++|+ .++|+|||++...+.+.+.+|...|+++.+.- ...+
T Consensus 68 --------~~~Vp~~~k~---~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~Dey 135 (673)
T KOG4378|consen 68 --------TPEVPRVRKL---TGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEY 135 (673)
T ss_pred --------CCccceeecc---ccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-Ccce
Confidence 1111111111 122445666666668999998 89999999998778888999999999999998 7789
Q ss_pred EEEeeCCCcEEEEEeecceEEEEecCcc-cCeeEEEEecCCCE-EEEEcCCCcEEEEeCCCcccccceeecccCCCCCCC
Q 001295 867 IAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA 944 (1106)
Q Consensus 867 la~g~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~-l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 944 (1106)
||+++..|.|.|..+.++.....|...+ ..|.-|.|++..+. |.+++.+|.|.+||+..... .....+.|..
T Consensus 136 iAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp----~~~~~~~HsA-- 209 (673)
T KOG4378|consen 136 IASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP----IFHASEAHSA-- 209 (673)
T ss_pred eEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc----ccchhhhccC--
Confidence 9999999999999999988777776543 45568999998764 66889999999999987432 3334444443
Q ss_pred CCCceEEEcCCCcEEEE--EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCce-e
Q 001295 945 QSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK-L 1021 (1106)
Q Consensus 945 ~~i~~~~~s~dg~~l~~--~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~-~ 1021 (1106)
+-..++|+|....|++ |.|..|.+||+........+.. ..+.+.++|+++|.+|++|+..|.|..||+...+ .
T Consensus 210 -P~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 210 -PCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP 285 (673)
T ss_pred -CcCcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence 6688999998776665 7999999999987776666643 6799999999999999999999999999997654 3
Q ss_pred EEeeCCCcccCCCCCCCCccceEEEEeC
Q 001295 1022 RCRINPSAYLPAGVSSSNVHPLVIAAHP 1049 (1106)
Q Consensus 1022 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 1049 (1106)
+..+. .|... |. .++|-|
T Consensus 286 v~v~s-------ah~~s-Vt--~vafq~ 303 (673)
T KOG4378|consen 286 VAVRS-------AHDAS-VT--RVAFQP 303 (673)
T ss_pred ceEee-------ecccc-ee--EEEeee
Confidence 33332 33233 66 777777
No 165
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=7.9e-19 Score=178.49 Aligned_cols=196 Identities=16% Similarity=0.238 Sum_probs=154.7
Q ss_pred CCCEEEEEeCCCeEEEEEccCCceeeeeee------------------eccccCCeeEEEEcCCCCceEEEEecCCCcEE
Q 001295 423 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLE------------------IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 484 (1106)
Q Consensus 423 dg~~las~~~d~~v~iwd~~~~~~~~~~~~------------------l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~ 484 (1106)
-|+|+|.|+.|..|.|||+.--..+.+... -.+|+..|.+++|+..-+. +|+|||.|.+|+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~ 269 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVK 269 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEE
Confidence 478999999999999999864322222222 2379999999999998887 899999999999
Q ss_pred EEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEee
Q 001295 485 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 564 (1106)
Q Consensus 485 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~ 564 (1106)
+||+.+|++..++..|.+.|.++.|++... .+|++|+.|++|.+.|.+........=...+.|..++|.+...
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p-~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se------ 342 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEP-SVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE------ 342 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCCCc-eEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc------
Confidence 999999999999999999999999987654 8999999999999999985222111111122344455544433
Q ss_pred eccceeEEEEcCCCCEEEEEECCCeEEEEECCCc-ceeEEEccCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEccCC
Q 001295 565 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 565 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
..++++..||+|+-+|++.. +++.++..|.. .|.++++++ ...++++++.|+.+++|++...
T Consensus 343 --------------~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~--~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 343 --------------NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD--EISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred --------------eeEEEecCCceEEeeecCCCCCceeEEEeccC--CcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 35777889999999999875 88888887754 899999998 4567889999999999998644
No 166
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.82 E-value=2.1e-17 Score=171.27 Aligned_cols=503 Identities=14% Similarity=0.148 Sum_probs=288.5
Q ss_pred cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEE--ccCCC
Q 001295 348 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW--SPDGS 425 (1106)
Q Consensus 348 ~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~--spdg~ 425 (1106)
.|...|.|+.|+.+.. ++.+ +.|..+.+|.-.+....... .+.....+.. -| +....- -....
T Consensus 12 r~~e~vc~v~w~~~ee-i~~~-~dDh~~~~~~~~~~~s~~~~-----~~p~df~pt~-----~h---~~~rs~~~g~~~d 76 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEE-IYFV-SDDHQIFKWSDVSRDSVEVA-----KLPDDFVPTD-----MH---LGGRSSGGGKGSD 76 (737)
T ss_pred ccceeEEeecccccce-EEEe-ccCceEEEeecccchhhhhh-----hCCcccCCcc-----cc---ccccccCCCCCcc
Confidence 4777788999999988 3544 45566666554333221110 0000000000 01 000000 01235
Q ss_pred EEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeE
Q 001295 426 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 505 (1106)
Q Consensus 426 ~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 505 (1106)
.|+.++.||.+.|-+-.. +.-+ ...+|.+.|.+-.|+|||. -|+|.|+||.|++|. ++|-...++.....+|.
T Consensus 77 ~~~i~s~DGkf~il~k~~-rVE~---sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~ 149 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSA-RVER---SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIR 149 (737)
T ss_pred eEEEEcCCceEEEecccc-hhhh---hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeE
Confidence 688888999988887543 2222 4779999999999999999 799999999999999 88887777777788999
Q ss_pred EEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEE
Q 001295 506 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 585 (1106)
Q Consensus 506 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 585 (1106)
|++|.|+.+ +.+++.+ +.+.+=-+.....+..+..|.+-|.++.|++.. +.+++|+
T Consensus 150 c~~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s---------------------~lI~sgG 205 (737)
T KOG1524|consen 150 CARWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQS---------------------NIIASGG 205 (737)
T ss_pred EEEECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccc---------------------cceeecC
Confidence 999988765 4555554 445554555556666777777766666555554 5799999
Q ss_pred CCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCC
Q 001295 586 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP 665 (1106)
Q Consensus 586 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (1106)
+|-..++||. .|+.+..-..|.+ +|++++|.|+ +.++.++. +++|+= .
T Consensus 206 ED~kfKvWD~-~G~~Lf~S~~~ey--~ITSva~npd-~~~~v~S~-nt~R~~---~------------------------ 253 (737)
T KOG1524|consen 206 EDFRFKIWDA-QGANLFTSAAEEY--AITSVAFNPE-KDYLLWSY-NTARFS---S------------------------ 253 (737)
T ss_pred CceeEEeecc-cCcccccCChhcc--ceeeeeeccc-cceeeeee-eeeeec---C------------------------
Confidence 9999999997 5666666666655 7999999999 66666664 233310 0
Q ss_pred CcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccc
Q 001295 666 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK 745 (1106)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 745 (1106)
...+.
T Consensus 254 ---------------------------------------------------------------------------p~~GS 258 (737)
T KOG1524|consen 254 ---------------------------------------------------------------------------PRVGS 258 (737)
T ss_pred ---------------------------------------------------------------------------CCccc
Confidence 13467
Q ss_pred eEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEE
Q 001295 746 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV 825 (1106)
Q Consensus 746 i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l 825 (1106)
|..++||+||..+++++..|.+.+=..-. ..+. -+.+=
T Consensus 259 ifnlsWS~DGTQ~a~gt~~G~v~~A~~ie----------------------q~l~--------------------~~n~~ 296 (737)
T KOG1524|consen 259 IFNLSWSADGTQATCGTSTGQLIVAYAIE----------------------QQLV--------------------SGNLK 296 (737)
T ss_pred eEEEEEcCCCceeeccccCceEEEeeeeh----------------------hhhh--------------------hccce
Confidence 88999999999999999998876421110 0000 00011
Q ss_pred EEE-eCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEec
Q 001295 826 MSA-SGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH 904 (1106)
Q Consensus 826 ~~~-sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~ 904 (1106)
++. ....|.+-|+.++.+ ..+. .+..|....+.. + +|+++. ...|++|.-......-.+.+....+.-+.-
T Consensus 297 ~t~~~r~~I~vrdV~~~v~-d~LE-~p~rv~k~sL~Y--~-hLvvaT-s~qvyiys~knwntpiiidgre~tr~lieq-- 368 (737)
T KOG1524|consen 297 ATSKSRKSITVRDVATGVQ-DILE-FPQRVVKFSLGY--G-HLVVAT-SLQVYIYSEKNWNTPIIIDGREDTRNLIEQ-- 368 (737)
T ss_pred eEeeccceEEeehhhhhHH-HHhh-Cccceeeeeece--e-EEEEEe-ccEEEEEecCCccCcEEEeccccchhHhhh--
Confidence 111 135566777766544 2232 344566666544 2 343333 346888775554433334443333321111
Q ss_pred CCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE--E-eCCeEEEEec-CCceEeee
Q 001295 905 ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--V-HETQLAIFET-TKLECVKQ 980 (1106)
Q Consensus 905 d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~--~-~d~~v~i~d~-~~~~~~~~ 980 (1106)
+...+-..+..+|.+|..+....... ...|.. ......-..|-....|+. . +..-+.+||. .+|+....
T Consensus 369 -~ek~fli~dgsSi~lytyegR~~~np----~~Pg~~--~dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~qgD 441 (737)
T KOG1524|consen 369 -GEKYFLILDGSSIWLYTYEGRLHLNP----RYPGSQ--IDLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKRQGD 441 (737)
T ss_pred -hhhheEEecCcEEEEEEecCceecCC----CCCCcc--cccccceeeecccceEEeecCCCCeeEEeccCCCCCcccCC
Confidence 11111122233455555544111000 011100 011111122223333444 2 3345778888 67665443
Q ss_pred cccCCCCCCeeEEEECC----CCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEE
Q 001295 981 WVPRESSAPITHATFSC----DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1056 (1106)
Q Consensus 981 ~~~~~h~~~v~~l~~s~----d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~ 1056 (1106)
-..-.|...|..++... +.+.++.-...+.++|=.+.+.-...++- .-| .-+. .++|+. -.-++
T Consensus 442 gk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~-----KiG---TmVh--tLawnd--ttNiL 509 (737)
T KOG1524|consen 442 GKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIY-----KIG---TMVH--TLAWND--TTNIL 509 (737)
T ss_pred ccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhh-----hhh---hhhh--hhhhcc--cccee
Confidence 22124566777777654 44566666666666665544321111111 111 0122 688874 55677
Q ss_pred EEeCCCcEEEEeecCC
Q 001295 1057 LGLSDGGVHVFEPLES 1072 (1106)
Q Consensus 1057 t~~~Dg~v~vW~~~~~ 1072 (1106)
.|-.|+++.||-.+..
T Consensus 510 cglqDt~fsVWy~pn~ 525 (737)
T KOG1524|consen 510 CGLQDTCFSVWYYPNE 525 (737)
T ss_pred eeeccceEEEEEcCCc
Confidence 8889999999987654
No 167
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.81 E-value=6.8e-18 Score=169.76 Aligned_cols=163 Identities=14% Similarity=0.226 Sum_probs=131.9
Q ss_pred cCeEEEEEccCCC-EEEEEeCCCeEEEEEccCCc------eeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEE
Q 001295 413 VSVNRVIWSPDGS-LFGVAYSRHIVQIYSYHGGD------EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 485 (1106)
Q Consensus 413 ~~V~~l~~spdg~-~las~~~d~~v~iwd~~~~~------~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~i 485 (1106)
.+|..+.|.+++. .||+|+.|..|+||.+..++ .+.-...|..|...|+++.|+|+|. +++||+++|.|.+
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge--lLASg~D~g~v~l 91 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE--LLASGGDGGEVFL 91 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC--eeeecCCCceEEE
Confidence 4899999999777 99999999999999887543 3445567889999999999999999 8999999999999
Q ss_pred EeCC--------C--------CceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeE
Q 001295 486 WDAT--------N--------GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCT 549 (1106)
Q Consensus 486 wd~~--------~--------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 549 (1106)
|-.. + ....+.+.+|...|..++|+++. .++++++.|..+++||+..+.....+..|.+.+.
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~--~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq 169 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS--NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ 169 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC--ceeeeeeccceEEEEEeccceeEeeccccccccc
Confidence 9755 2 12345678899999999996554 7999999999999999999888888888887777
Q ss_pred EEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcce
Q 001295 550 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL 600 (1106)
Q Consensus 550 ~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 600 (1106)
.++|.|-++ ++++-+.|...+.+.+...+.
T Consensus 170 gvawDpl~q---------------------yv~s~s~dr~~~~~~~~~~~~ 199 (434)
T KOG1009|consen 170 GVAWDPLNQ---------------------YVASKSSDRHPEGFSAKLKQV 199 (434)
T ss_pred eeecchhhh---------------------hhhhhccCcccceeeeeeeee
Confidence 777666655 677777777666666544433
No 168
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.5e-19 Score=205.23 Aligned_cols=259 Identities=13% Similarity=0.144 Sum_probs=201.3
Q ss_pred eccCCCCcEEEEEecCCCe---EEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc
Q 001295 346 TLNQGSSPMSMDFHPVQQT---LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 422 (1106)
Q Consensus 346 ~~~h~~~v~~~~~sp~g~~---llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 422 (1106)
.+.-...-+.++|.+.|.. |||.|..||.|.+||...- +... ... .......|.+.|..+.|++
T Consensus 60 s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~--~~~~----------~~~-~la~~~~h~G~V~gLDfN~ 126 (1049)
T KOG0307|consen 60 SLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI--IANA----------SEE-VLATKSKHTGPVLGLDFNP 126 (1049)
T ss_pred cccccccceeeeecccCCCccceeeccccCCceEEecchhh--ccCc----------chH-HHhhhcccCCceeeeeccc
Confidence 3445677889999998886 6999999999999998652 0000 001 1113678999999999999
Q ss_pred CC-CEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccC
Q 001295 423 DG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 501 (1106)
Q Consensus 423 dg-~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 501 (1106)
.+ .+||+|+.||.|.|||+..-+...... -..-.+.|.+++|+..-.. +|++++.+|.+.|||++..+.+-.+..|.
T Consensus 127 ~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~~~ 204 (1049)
T KOG0307|consen 127 FQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSDTP 204 (1049)
T ss_pred cCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcccccccCC
Confidence 55 499999999999999998754322110 1124568999999987776 79999999999999999998887777665
Q ss_pred C--CeEEEeccccCCceEEEEEecC-C--eEEEEeCCCCC-ceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEc
Q 001295 502 A--PVYSVCPHHKENIQFIFSTALD-G--KIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 575 (1106)
Q Consensus 502 ~--~v~~~~~~~~~~~~~l~s~~~d-g--~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~ 575 (1106)
+ .+..+.|+|+... .+++++.| + .|.+||++... ....+..|...|.++.|++.+.
T Consensus 205 ~~~~~S~l~WhP~~aT-ql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~----------------- 266 (1049)
T KOG0307|consen 205 GRMHCSVLAWHPDHAT-QLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDP----------------- 266 (1049)
T ss_pred CccceeeeeeCCCCce-eeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCc-----------------
Confidence 4 4678899998764 45555443 3 69999998654 4456678888888888877663
Q ss_pred CCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccC-CCEEEEEeCCCcEEEEEccCC
Q 001295 576 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD-GCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 576 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
.++++++.|+.|.+||..+++.+..+... ..++..+.|.|. -..+++++-||.|.|+.+.+.
T Consensus 267 ---~lllSsgkD~~ii~wN~~tgEvl~~~p~~--~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 267 ---RLLLSSGKDNRIICWNPNTGEVLGELPAQ--GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred ---hhhhcccCCCCeeEecCCCceEeeecCCC--CcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 36899999999999999999999999764 348999999995 458999999999999998765
No 169
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.81 E-value=1.3e-18 Score=164.62 Aligned_cols=308 Identities=14% Similarity=0.199 Sum_probs=199.3
Q ss_pred ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEee-CCCCeeEEEEEecCCCeEEEeeecccee
Q 001295 492 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLG 570 (1106)
Q Consensus 492 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~i~ 570 (1106)
.+.+.+++|.+.|+++.|..+ .+|++|..-|.|++|++.+......+. .+...|+.+...|++.
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~---~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~------------ 69 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQAN---ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDS------------ 69 (323)
T ss_pred CCeeEeccccchheehhhccc---hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcc------------
Confidence 356678899999999997543 369999999999999999988887777 4556777777777665
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCC-cEEEEEccCCchhhhhh
Q 001295 571 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN-GIKILATSDGIRLLRTF 649 (1106)
Q Consensus 571 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~ 649 (1106)
+.+-+.|..+.+|++..+..+..-. -.++++.|.+-. +...+... .+..++-+.... .+..
T Consensus 70 ----------l~tqgRd~~L~lw~ia~s~~i~i~S-----i~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde-~h~~ 131 (323)
T KOG0322|consen 70 ----------LDTQGRDPLLILWTIAYSAFISIHS-----IVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE-THKQ 131 (323)
T ss_pred ----------hhhcCCCceEEEEEccCcceEEEee-----eeccccccccce--eccCCCcchhheecCCcccch-hhhh
Confidence 8889999999999998766544322 124444443311 11111100 111111111100 0000
Q ss_pred cccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCC
Q 001295 650 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 729 (1106)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~ 729 (1106)
.+ +..-.+.+-+-
T Consensus 132 D~-------------------------------------------------------------g~~tqv~i~dd------ 144 (323)
T KOG0322|consen 132 DG-------------------------------------------------------------GDTTQVQIADD------ 144 (323)
T ss_pred cc-------------------------------------------------------------CccceeEccCc------
Confidence 00 00001111110
Q ss_pred ccceecccCccccccceEEEEEcC-CC-c-eEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCC
Q 001295 730 NQCRSLRLPENLRATKISRLIFTN-SG-N-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 806 (1106)
Q Consensus 730 ~~~~~~~~~~~~~~~~i~~~~~s~-~~-~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 806 (1106)
+..+..+.+.+..+.. ++ . .+++|.++|.+.+||++.+..- .+......+....
T Consensus 145 --------~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~-------------~~~~~~~kv~~~~-- 201 (323)
T KOG0322|consen 145 --------SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKI-------------IQLPQSSKVESPN-- 201 (323)
T ss_pred --------hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCcee-------------eccccccccccch--
Confidence 0012334444444222 22 2 3556667899999998864211 1111111111111
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCC--Ccee--eeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEe
Q 001295 807 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT--FKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 881 (1106)
Q Consensus 807 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~--~~~~--~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~ 881 (1106)
..|..+|.++.+.+.-..=++|+ +..+..|++.. +.+. .++......|..+.+-| |++++|+++.|+.||||+.
T Consensus 202 ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVysw 280 (323)
T KOG0322|consen 202 ASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSW 280 (323)
T ss_pred hhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEe
Confidence 23899999999987655556666 67788888763 3322 22333345688899999 9999999999999999999
Q ss_pred ecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeC
Q 001295 882 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 923 (1106)
Q Consensus 882 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~ 923 (1106)
++...+..++-|++.|++++|+||...+|.++.|++|.+|++
T Consensus 281 rtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 281 RTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999999999999999986
No 170
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=1.3e-17 Score=162.37 Aligned_cols=227 Identities=13% Similarity=0.129 Sum_probs=172.9
Q ss_pred CCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCC---CCeeEEEEecCCCEEEEEe
Q 001295 753 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE---EAVPCFALSKNDSYVMSAS 829 (1106)
Q Consensus 753 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~---~~v~~l~~s~~~~~l~~~s 829 (1106)
|+..++++.+.+.-|++||.-++ ++... .....|. ....+++|+|||.+|++|.
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG----------------------~lraS-y~~ydh~de~taAhsL~Fs~DGeqlfaGy 177 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTG----------------------KLRAS-YRAYDHQDEYTAAHSLQFSPDGEQLFAGY 177 (406)
T ss_pred CccceeeeccccCceeeeecccc----------------------ccccc-hhhhhhHHhhhhheeEEecCCCCeEeecc
Confidence 67788888888999988876543 32211 1111122 2356899999999999999
Q ss_pred CCeEEEEEcC-CCceee---ee----cCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEE
Q 001295 830 GGKISLFNMM-TFKTMA---TF----MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA 901 (1106)
Q Consensus 830 dg~i~vwd~~-~~~~~~---~~----~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~ 901 (1106)
..+|++||+. .|..-. ++ .+..+-|.+++|+|.+.+.+|+|+....+-||.-..+.++..+-+|.+.|+.|+
T Consensus 178 krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~ 257 (406)
T KOG2919|consen 178 KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQ 257 (406)
T ss_pred cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEE
Confidence 9999999993 443221 11 233566899999998889999999999999999888999999999999999999
Q ss_pred EecCCCEEEEEcC-CCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCC-ceEe
Q 001295 902 FSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK-LECV 978 (1106)
Q Consensus 902 ~s~d~~~l~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~-~~~~ 978 (1106)
|.+||+.|++|+. |-.|..||++..+. .+-.+..|......-......|+|++|+++ .||.|++||+++ +..+
T Consensus 258 ~~edGn~lfsGaRk~dkIl~WDiR~~~~----pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~ 333 (406)
T KOG2919|consen 258 WCEDGNKLFSGARKDDKILCWDIRYSRD----PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEV 333 (406)
T ss_pred eccCcCeecccccCCCeEEEEeehhccc----hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcc
Confidence 9999999999985 67899999987543 223333333312233345567899999996 899999999998 6655
Q ss_pred eecccCCCCCCeeEEEECCCCCEEEEEEcC
Q 001295 979 KQWVPRESSAPITHATFSCDSQLVYACFLD 1008 (1106)
Q Consensus 979 ~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D 1008 (1106)
..+. .|+..+..+++.|-=.++|+++..
T Consensus 334 sv~~--~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 334 SVTG--NYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cccc--cccccccceecCcccceeeeccCc
Confidence 5554 678999999999998888888755
No 171
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=3.4e-18 Score=177.52 Aligned_cols=229 Identities=14% Similarity=0.178 Sum_probs=162.2
Q ss_pred ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295 407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 486 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 486 (1106)
.+.||++.|.|++|+.||.+||+|+.|-.+.|||.-..+.+..+ -.||...|.++.|-|.....+++||..|..|+++
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--ecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 48999999999999999999999999999999999877766654 3499999999999998666689999999999999
Q ss_pred eCCCC----------ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecC
Q 001295 487 DATNG----------AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 556 (1106)
Q Consensus 487 d~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 556 (1106)
|+... ...+.+..|...|..++..+... +.+.+++.||+|+-+|++....-.. ...-.+..+.+.++
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P-htfwsasEDGtirQyDiREph~c~p--~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP-HTFWSASEDGTIRQYDIREPHVCNP--DEDCPSILVNYNPQ 199 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCC-ceEEEecCCcceeeecccCCccCCc--cccccHHHHHhchh
Confidence 99842 23445667888898888544332 7899999999999999986321110 00001111111121
Q ss_pred CCeEEEeeeccceeEEEEcCCC-CEEEEEECCCeEEEEECCC--------cc----------eeEEEc-cCC-C-----C
Q 001295 557 GTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDDFSIKFWDMDS--------VQ----------LLTSID-ADG-G-----L 610 (1106)
Q Consensus 557 ~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~--------~~----------~~~~~~-~~~-~-----~ 610 (1106)
- -...++.++|.. .+|++|+.|-..++||.+. +. ++..+. +|- . .
T Consensus 200 l---------ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~ 270 (758)
T KOG1310|consen 200 L---------IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLD 270 (758)
T ss_pred h---------heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccc
Confidence 1 144556666655 4677799999999999421 11 122221 110 0 0
Q ss_pred ---CCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhh
Q 001295 611 ---PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649 (1106)
Q Consensus 611 ---~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 649 (1106)
..++-++|+|+|.-|++.-....|+++|+..++.....+
T Consensus 271 ~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 271 RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 124557899999988888877899999998875544433
No 172
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.79 E-value=9.4e-17 Score=156.60 Aligned_cols=383 Identities=14% Similarity=0.156 Sum_probs=242.6
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEE
Q 001295 417 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 496 (1106)
Q Consensus 417 ~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 496 (1106)
-++|||+|+|+|+++.- .+.|-|..+-+..+. .---+.|..+.|..|.-. .+.....|+.|.+|++...+-...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~ql----f~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQL----FLCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHH----HHHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 46899999999999765 688888887654432 122457899999988875 566677899999999999988889
Q ss_pred EeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeee-----------
Q 001295 497 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR----------- 565 (1106)
Q Consensus 497 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~----------- 565 (1106)
+.....++.+++|+|++. ..|.+...|-.|.+|.+.+..... +.-....+..++|.+||+......+
T Consensus 87 Ideg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~ 164 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS 164 (447)
T ss_pred eccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHHh
Confidence 988889999999977653 677788889999999998754433 3344455689999999984332221
Q ss_pred -------------ccceeEEEEcCCCCEEEEEE--CCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeC
Q 001295 566 -------------KRSLGVVQFDTTKNRFLAAG--DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN 630 (1106)
Q Consensus 566 -------------~~~i~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 630 (1106)
.-..+.+.|+|||+.++.-. -+-.|+.|... -.+..++|+|.+++|++|+.
T Consensus 165 c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~--------------lG~k~v~wsP~~qflavGsy 230 (447)
T KOG4497|consen 165 CKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERG--------------LGLKFVEWSPCNQFLAVGSY 230 (447)
T ss_pred hHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeec--------------cceeEEEeccccceEEeecc
Confidence 12455688999998877532 22233322221 24778999999999999999
Q ss_pred CCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccc
Q 001295 631 DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRI 710 (1106)
Q Consensus 631 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 710 (1106)
|+.+|+.+--+- +.+..+.. ...+
T Consensus 231 D~~lrvlnh~tW-k~f~eflh-l~s~------------------------------------------------------ 254 (447)
T KOG4497|consen 231 DQMLRVLNHFTW-KPFGEFLH-LCSY------------------------------------------------------ 254 (447)
T ss_pred chhhhhhceeee-eehhhhcc-chhc------------------------------------------------------
Confidence 999998765443 22222110 0000
Q ss_pred cccCCCc-eeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCc
Q 001295 711 TEESNDK-SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAP 789 (1106)
Q Consensus 711 ~~~~d~~-i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 789 (1106)
.|.+ ..++.- .... -.-...++.|.|..- ...+|............ ...+
T Consensus 255 ---~dp~~~~~~ke-------~~~~-------~ql~~~cLsf~p~~~---------~a~~~~~se~~YE~~~~---pv~~ 305 (447)
T KOG4497|consen 255 ---HDPTLHLLEKE-------TFSI-------VQLLHHCLSFTPTDL---------EAHIWEESETIYEQQMT---PVKV 305 (447)
T ss_pred ---cCchhhhhhhh-------hcch-------hhhcccccccCCCcc---------ccCccccchhhhhhhhc---ceee
Confidence 0000 000000 0000 001112333433221 01111111000000000 0000
Q ss_pred cccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEeC---CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCce
Q 001295 790 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 866 (1106)
Q Consensus 790 ~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sd---g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~ 866 (1106)
....+.+ +. .+..-.+.-++|++|..++++-.| +.+.+||++..+....+. ...+|.+..|.| ....
T Consensus 306 ~~lkp~t------D~--pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~pr 375 (447)
T KOG4497|consen 306 HKLKPPT------DF--PNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRPR 375 (447)
T ss_pred ecccCCC------CC--CCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCce
Confidence 0000000 01 113455778999999999999985 569999999876655544 567899999999 6666
Q ss_pred EEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCc
Q 001295 867 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ 917 (1106)
Q Consensus 867 la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~ 917 (1106)
|+.......+++|......++..- +..-.|..++|..+|..++-.+.|..
T Consensus 376 L~vctg~srLY~W~psg~~~V~vP-~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 376 LVVCTGKSRLYFWAPSGPRVVGVP-KKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred EEEEcCCceEEEEcCCCceEEecC-CCCceeeeEEecCCCcEEEEEcCCce
Confidence 766766778999997765555433 33467999999999999999999974
No 173
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.79 E-value=1.3e-17 Score=162.25 Aligned_cols=275 Identities=16% Similarity=0.255 Sum_probs=190.7
Q ss_pred CeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC-------cee-----EEEe-ccCCCeEEEecc-----ccCCceEEEE
Q 001295 459 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-------AKQ-----YIFE-GHEAPVYSVCPH-----HKENIQFIFS 520 (1106)
Q Consensus 459 ~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-------~~~-----~~~~-~h~~~v~~~~~~-----~~~~~~~l~s 520 (1106)
-...+.|+|||. .|++-+.|..+++|++... ..+ .+++ .....|...+|. ..++..++++
T Consensus 51 f~kgckWSPDGS--ciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ 128 (406)
T KOG2919|consen 51 FLKGCKWSPDGS--CILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAV 128 (406)
T ss_pred hhccceeCCCCc--eEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeee
Confidence 345689999999 7999999999999987521 111 1111 123456666764 2355578999
Q ss_pred EecCCeEEEEeCCCCCceeEeeCCCC-----eeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEEC
Q 001295 521 TALDGKIKAWLYDNLGSRVDYEAPGR-----WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM 595 (1106)
Q Consensus 521 ~~~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 595 (1106)
.+.+.-|++||.-+++....+..-.. ...+++|+|| |.+|++| ....|+++|+
T Consensus 129 ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~D---------------------GeqlfaG-ykrcirvFdt 186 (406)
T KOG2919|consen 129 SSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPD---------------------GEQLFAG-YKRCIRVFDT 186 (406)
T ss_pred ccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCC---------------------CCeEeec-ccceEEEeec
Confidence 99999999999998877665543221 2234455555 4556655 4578999998
Q ss_pred -CCcceeEEEc-----cCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcC
Q 001295 596 -DSVQLLTSID-----ADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTIS 668 (1106)
Q Consensus 596 -~~~~~~~~~~-----~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (1106)
+.|+...... ..+..+.+.+++|+| +.+.+++|+....+-|+.-... .++..
T Consensus 187 ~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~l-------------------- 245 (406)
T KOG2919|consen 187 SRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQL-------------------- 245 (406)
T ss_pred cCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC-Cceee--------------------
Confidence 5554332221 112234577889999 6668888888777766643322 11000
Q ss_pred chhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEE
Q 001295 669 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR 748 (1106)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~ 748 (1106)
T Consensus 246 -------------------------------------------------------------------------------- 245 (406)
T KOG2919|consen 246 -------------------------------------------------------------------------------- 245 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEE
Q 001295 749 LIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA 828 (1106)
Q Consensus 749 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~ 828 (1106)
+ .+|.+.|+.++|.++|+.|.+|
T Consensus 246 -------------------------------------------------------l--ggh~gGvThL~~~edGn~lfsG 268 (406)
T KOG2919|consen 246 -------------------------------------------------------L--GGHGGGVTHLQWCEDGNKLFSG 268 (406)
T ss_pred -------------------------------------------------------e--cccCCCeeeEEeccCcCeeccc
Confidence 0 1277778888888888888888
Q ss_pred e--CCeEEEEEcCC-CceeeeecCCCC-CeeEEEE--ecCCCceEEEeeCCCcEEEEEeec-ceEEEEecCcccCeeEEE
Q 001295 829 S--GGKISLFNMMT-FKTMATFMPPPP-AATFLAF--HPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLA 901 (1106)
Q Consensus 829 s--dg~i~vwd~~~-~~~~~~~~~~~~-~v~~l~~--s~~d~~~la~g~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~ 901 (1106)
+ +..|..||++. ...+..+..|.. .=..|.| .| ++++||+|+.||.|++||+++ |..+..+..|+..|+.++
T Consensus 269 aRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvs 347 (406)
T KOG2919|consen 269 ARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVS 347 (406)
T ss_pred ccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCCccccccccccccccee
Confidence 7 67899999874 455566666654 2233444 56 789999999999999999998 777888889999999999
Q ss_pred EecCCCEEEEEcCCC
Q 001295 902 FSHALNVLVSSGADS 916 (1106)
Q Consensus 902 ~s~d~~~l~s~s~Dg 916 (1106)
++|--.++|+++...
T Consensus 348 lnP~mpilatssGqr 362 (406)
T KOG2919|consen 348 LNPIMPILATSSGQR 362 (406)
T ss_pred cCcccceeeeccCce
Confidence 999988888887643
No 174
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=1.6e-17 Score=166.03 Aligned_cols=216 Identities=14% Similarity=0.249 Sum_probs=164.9
Q ss_pred cccCCCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEEccCCce----eeeeeeeccccCCeeEEEEcCCCCceEEEEecCC
Q 001295 406 ALVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD 480 (1106)
Q Consensus 406 ~~~~~h~~~V~~l~~sp-dg~~las~~~d~~v~iwd~~~~~~----~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d 480 (1106)
....||+++|..++|+| +...||+||.|.+|.||++..+-. ..+...|.||...|..++|+|...+ +|+|+|.|
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~D 153 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSD 153 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCC
Confidence 35789999999999999 888999999999999999875433 2445678999999999999999887 79999999
Q ss_pred CcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCC-eeEEEEEecCCCe
Q 001295 481 KTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR-WCTTMAYSADGTR 559 (1106)
Q Consensus 481 ~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~ 559 (1106)
.+|.+||+.+|+.+-++. |...|.+++|+ .||.+|++.+.|+.||+||.++++.+..-..|.+ .-....|-.+|.
T Consensus 154 n~v~iWnv~tgeali~l~-hpd~i~S~sfn--~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~- 229 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLD-HPDMVYSMSFN--RDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK- 229 (472)
T ss_pred ceEEEEeccCCceeeecC-CCCeEEEEEec--cCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-
Confidence 999999999999999988 99999999985 5568999999999999999999887766555543 233344444443
Q ss_pred EEEeeeccceeEEEEcCCCCEEEEEE----CCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEE-EEeCCCcE
Q 001295 560 TYQGFRKRSLGVVQFDTTKNRFLAAG----DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA-VSTNDNGI 634 (1106)
Q Consensus 560 ~~~~~~~~~i~~~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i 634 (1106)
+++.+ .+..+-+||...-+.-..+..-.....|.---|.+|..++. +|-.|+.|
T Consensus 230 ---------------------i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~I 288 (472)
T KOG0303|consen 230 ---------------------IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSI 288 (472)
T ss_pred ---------------------eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcce
Confidence 44432 57889999976543222221111122355455778777765 45569999
Q ss_pred EEEEccCCchhhh
Q 001295 635 KILATSDGIRLLR 647 (1106)
Q Consensus 635 ~iwd~~~~~~~~~ 647 (1106)
|.|.+.+....+.
T Consensus 289 RYyEit~d~P~~h 301 (472)
T KOG0303|consen 289 RYFEITNEPPFVH 301 (472)
T ss_pred EEEEecCCCceeE
Confidence 9999987743333
No 175
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.6e-16 Score=169.22 Aligned_cols=498 Identities=14% Similarity=0.178 Sum_probs=292.6
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC-----
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD----- 423 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd----- 423 (1106)
|...-.++.|+|.| |+|.|+. ..|.|-|..+-+.+.. +.-|...|+.+.|.|-
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~ 71 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRD 71 (1062)
T ss_pred CcccccccccCccc--eEEEecC-ceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchh
Confidence 34457889999999 6888875 5788889887776653 6788899999999883
Q ss_pred -C------CEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcC---CCCceEEEEecCCCcEEEEeCCCCce
Q 001295 424 -G------SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH---PNKQLCVITCGDDKTIKVWDATNGAK 493 (1106)
Q Consensus 424 -g------~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~---d~~~~~l~s~~~d~~i~iwd~~~~~~ 493 (1106)
+ -+||++...|.|.+||...+..+. .+..|..+|..++|-+ +.+. +|+.-....+|.+|+..+|+.
T Consensus 72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence 1 257778888999999999876554 4778999999999965 3434 455556678999999999999
Q ss_pred eEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCC-------eEEEe--e
Q 001295 494 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-------RTYQG--F 564 (1106)
Q Consensus 494 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~~~~~--~ 564 (1106)
............|+.+.|-...+ +..-+..|.+.+-+.-..... ..+...+..+.+-. ....| +
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~rh-~~~l~s~g~vl~~~~l~~sep------~~pgk~~qI~sd~Sdl~~lere~at~ns~ 220 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDSRH-FCVLGSKGFVLSCKDLGLSEP------DVPGKEFQITSDHSDLAHLERETATGNST 220 (1062)
T ss_pred eeccccCCcceeeeeeCCCCcce-EEEEccCceEEEEeccCCCCC------CCCceeEEEecCccchhhhhhhhhccccc
Confidence 88877666777778877765544 444445666666554321110 00111111111100 00000 0
Q ss_pred ecc--c------eeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccC--CCEEEEEeCCCcE
Q 001295 565 RKR--S------LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD--GCLLAVSTNDNGI 634 (1106)
Q Consensus 565 ~~~--~------i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i 634 (1106)
... . ...++|+|.-+.++.......+.++|++-..++.......+ .+.-+.+-|+ ...|+++-.||.+
T Consensus 221 ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~l 298 (1062)
T KOG1912|consen 221 TSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRL 298 (1062)
T ss_pred cCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeE
Confidence 000 0 11245677666666666678899999999888888876644 3455777775 4578999999999
Q ss_pred EEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccC
Q 001295 635 KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEES 714 (1106)
Q Consensus 635 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 714 (1106)
.+|-.+.....++.-..+ + +.+.
T Consensus 299 tirvrk~~~~~f~~~~~~--------------l-------------------------------------------~~dl 321 (1062)
T KOG1912|consen 299 TIRVRKEEPTEFKKPNAS--------------L-------------------------------------------SMDL 321 (1062)
T ss_pred EEEEeeccCccccccchh--------------h-------------------------------------------cccc
Confidence 999654321111110000 0 0000
Q ss_pred CCceeeEecCCCCCCccceecccCccccccceEEEEEcCC-CceEEEeecCceEEEeeccccccCCCCccccccCccccC
Q 001295 715 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 793 (1106)
Q Consensus 715 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~ 793 (1106)
...+.+-... .+..+......|. ...++..-.+|...+|.+..+....++.....
T Consensus 322 ~~Q~~~vr~m-----------------~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~i------- 377 (1062)
T KOG1912|consen 322 GEQVHVVRPM-----------------EEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSI------- 377 (1062)
T ss_pred ccceEEEeec-----------------hhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccc-------
Confidence 0011110000 1111222222332 33344445556666666654332222111000
Q ss_pred CCCCCccccccCCCCCCCCeeEEEEecCCC-------EEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCC-
Q 001295 794 PPSGIMMTNDVTDSNPEEAVPCFALSKNDS-------YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN- 864 (1106)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~-------~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~- 864 (1106)
.-+. -|+-++. .+..-+ || ....|........- ...+-..-.| .+
T Consensus 378 -----------------el~~--pf~f~~~~~~v~k~~l~~LS~dg-----~h~sGs~~~~~~p~-p~~t~~~~~p-~~n 431 (1062)
T KOG1912|consen 378 -----------------ELVL--PFDFNLSTKLVGKTSLISLSDDG-----SHSSGSTCVRMRPM-PELTKVENDP-GGN 431 (1062)
T ss_pred -----------------cccc--cccccCceeehhhccccchhhcC-----CCCCCceeeecccC-cccceeecCC-CCC
Confidence 0000 0110111 111111 22 01111111111100 0001111111 11
Q ss_pred ------ceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEE---------EEcCCCcEEEEeCCCcccc
Q 001295 865 ------NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV---------SSGADSQLCVWSSDGWEKQ 929 (1106)
Q Consensus 865 ------~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~---------s~s~Dg~i~vwd~~~~~~~ 929 (1106)
.++|.|...|+|.++|+.++...+.+..|++.|.++.|.-...++- +++.-+.+.|-|+.+|...
T Consensus 432 ~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk 511 (1062)
T KOG1912|consen 432 TPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSK 511 (1062)
T ss_pred ccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEccccccc
Confidence 2889999999999999999999999999999999999976544332 2222345778899887654
Q ss_pred cceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceEeeecccCCCCCC-eeEEEEC
Q 001295 930 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAP-ITHATFS 996 (1106)
Q Consensus 930 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~-v~~l~~s 996 (1106)
..+-++.. ...+|+.+..|.-|+||+.. .+.-+.+||+++..+++.... .-+ |+.+.|+
T Consensus 512 ~fR~l~~~-----despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~---a~P~it~leWs 572 (1062)
T KOG1912|consen 512 RFRGLQKP-----DESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSL---ALPLITVLEWS 572 (1062)
T ss_pred ccccCCCC-----CcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhh---cCCcEEEEeec
Confidence 33322222 23689999999999999995 788899999998887766542 334 8888888
No 176
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.76 E-value=3.8e-17 Score=163.42 Aligned_cols=243 Identities=14% Similarity=0.205 Sum_probs=174.1
Q ss_pred CcceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEE
Q 001295 340 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 419 (1106)
Q Consensus 340 ~~~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 419 (1106)
+...-..-+|+.+|..++|+|-+...||+||.|.+|.||++..+..... ..-....|.||...|--++
T Consensus 71 d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~------------ltepvv~L~gH~rrVg~V~ 138 (472)
T KOG0303|consen 71 DASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD------------LTEPVVELYGHQRRVGLVQ 138 (472)
T ss_pred CCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC------------cccceEEEeecceeEEEEe
Confidence 4444455679999999999999888999999999999999987654431 1112225899999999999
Q ss_pred Ecc-CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEe
Q 001295 420 WSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 498 (1106)
Q Consensus 420 ~sp-dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 498 (1106)
|+| -.+.|++++.|.+|.+||+.+|+.+- ++. |.+.|+++.|+.||. +++|.+.|+.|+|||.++++.+..-.
T Consensus 139 wHPtA~NVLlsag~Dn~v~iWnv~tgeali---~l~-hpd~i~S~sfn~dGs--~l~TtckDKkvRv~dpr~~~~v~e~~ 212 (472)
T KOG0303|consen 139 WHPTAPNVLLSAGSDNTVSIWNVGTGEALI---TLD-HPDMVYSMSFNRDGS--LLCTTCKDKKVRVIDPRRGTVVSEGV 212 (472)
T ss_pred ecccchhhHhhccCCceEEEEeccCCceee---ecC-CCCeEEEEEeccCCc--eeeeecccceeEEEcCCCCcEeeecc
Confidence 999 56788999999999999999998765 455 999999999999999 89999999999999999999999888
Q ss_pred ccCCCeE-EEeccccCCceEEEEEe---cCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEE
Q 001295 499 GHEAPVY-SVCPHHKENIQFIFSTA---LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 574 (1106)
Q Consensus 499 ~h~~~v~-~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~ 574 (1106)
+|.+.-. .+.| -.++.++-+|- .+..+-+||..+.+....+..-. +...+..-.|
T Consensus 213 ~heG~k~~Raif--l~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-------------------tSnGvl~PFy 271 (472)
T KOG0303|consen 213 AHEGAKPARAIF--LASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-------------------TSNGVLLPFY 271 (472)
T ss_pred cccCCCcceeEE--eccCceeeeccccccccceeccCcccccCcceeEEec-------------------cCCceEEeee
Confidence 8875422 2233 34555444442 36789999987655443221100 0011222234
Q ss_pred cCCCCEEE-EEECCCeEEEEECCCcce-eEEEccCCCCCCcCeEEEccC
Q 001295 575 DTTKNRFL-AAGDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKD 621 (1106)
Q Consensus 575 ~~~~~~l~-~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~ 621 (1106)
+++.+.+. +|-.|+.||-|.+....+ ++.+.......+-..+.|.|.
T Consensus 272 D~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 272 DPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred cCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence 45545554 456799999999976553 333333333344566777774
No 177
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.76 E-value=2e-18 Score=187.90 Aligned_cols=286 Identities=17% Similarity=0.233 Sum_probs=213.9
Q ss_pred ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295 407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 486 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 486 (1106)
-+.+|...|+|+.|...|.++++|+.|..|+||..+++.++. ...||.+.|+.++.+.+.. ++++++.|..|++|
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---s~rGhs~ditdlavs~~n~--~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---SCRGHSGDITDLAVSSNNT--MIAAASNDKVIRVW 259 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---cCCCCccccchhccchhhh--hhhhcccCceEEEE
Confidence 378999999999999999999999999999999999988776 7899999999999998887 89999999999999
Q ss_pred eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeec
Q 001295 487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 566 (1106)
Q Consensus 487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 566 (1106)
.+.++.++..+.||++.|++++|+|.. +.+.||++++||.+- .. +.+.|...
T Consensus 260 rl~~~~pvsvLrghtgavtaiafsP~~------sss~dgt~~~wd~r~-~~-------------~~y~prp~-------- 311 (1113)
T KOG0644|consen 260 RLPDGAPVSVLRGHTGAVTAIAFSPRA------SSSDDGTCRIWDARL-EP-------------RIYVPRPL-------- 311 (1113)
T ss_pred ecCCCchHHHHhccccceeeeccCccc------cCCCCCceEeccccc-cc-------------cccCCCCC--------
Confidence 999999999999999999999987643 778899999998871 10 01111100
Q ss_pred cceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhh
Q 001295 567 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 646 (1106)
Q Consensus 567 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 646 (1106)
+..++ ..+.++.|-.++.-+++|+.|+.-..|...-.
T Consensus 312 ---------------------------~~~~~------------~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l---- 348 (1113)
T KOG0644|consen 312 ---------------------------KFTEK------------DLVDSILFENNGDRFLTGSRDGEARNHEFEQL---- 348 (1113)
T ss_pred ---------------------------Ccccc------------cceeeeeccccccccccccCCcccccchhhHh----
Confidence 00000 12334555556666777777777666643210
Q ss_pred hhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCC
Q 001295 647 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 726 (1106)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 726 (1106)
T Consensus 349 -------------------------------------------------------------------------------- 348 (1113)
T KOG0644|consen 349 -------------------------------------------------------------------------------- 348 (1113)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCC
Q 001295 727 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 806 (1106)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 806 (1106)
++..++-.+++...|
T Consensus 349 -----------------------~~~~~~lif~t~ssd------------------------------------------ 363 (1113)
T KOG0644|consen 349 -----------------------AWRSNLLIFVTRSSD------------------------------------------ 363 (1113)
T ss_pred -----------------------hhhccceEEEecccc------------------------------------------
Confidence 000000001111111
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecce
Q 001295 807 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 885 (1106)
Q Consensus 807 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~ 885 (1106)
-..+.+++- +-.+++|++.+|...+.+.+|...+..+.++|-+.++..+++.||...|||+-.|.
T Consensus 364 --------------~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 364 --------------LSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred --------------ccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCC
Confidence 002233333 66789999999999999999999999999999778888899999999999999887
Q ss_pred EEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcc
Q 001295 886 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 927 (1106)
Q Consensus 886 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~ 927 (1106)
.++...-....+..-+||+||..++....-|.+.|.....++
T Consensus 430 pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 430 PIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred cceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 765543334456678999999999998888999998766544
No 178
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=8.3e-16 Score=143.79 Aligned_cols=288 Identities=11% Similarity=0.123 Sum_probs=195.6
Q ss_pred ceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCE
Q 001295 745 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 824 (1106)
Q Consensus 745 ~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ 824 (1106)
.|.+-+++|.+++++++..+|.|.+..+..-..... ...|+...... ..|..+|+.++|. ..+
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa-------------~~~gk~~iv~e--qahdgpiy~~~f~--d~~ 74 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA-------------EPPGKLKIVPE--QAHDGPIYYLAFH--DDF 74 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc-------------CCCCCcceeec--cccCCCeeeeeee--hhh
Confidence 455668899999999999999999998764221100 11222222222 3499999999997 568
Q ss_pred EEEEeCCeEEEEEcCCCce------eee--ecC-----CCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEec
Q 001295 825 VMSASGGKISLFNMMTFKT------MAT--FMP-----PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 891 (1106)
Q Consensus 825 l~~~sdg~i~vwd~~~~~~------~~~--~~~-----~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~ 891 (1106)
|++++||.|+-|....... +.. ... .-..|+++-..|..+.+|. ++.|+.++-||+++|+..++++
T Consensus 75 Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-AgGD~~~y~~dlE~G~i~r~~r 153 (325)
T KOG0649|consen 75 LLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-AGGDGVIYQVDLEDGRIQREYR 153 (325)
T ss_pred eeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-ecCCeEEEEEEecCCEEEEEEc
Confidence 8899999999988653221 111 111 2346899999995555554 5579999999999999999999
Q ss_pred CcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCC--CCCceEEEcCCCcEEEEEeCCeEEE
Q 001295 892 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA--QSDTRVQFHQDQIHFLVVHETQLAI 969 (1106)
Q Consensus 892 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~s~dg~~l~~~~d~~v~i 969 (1106)
||++.|.++.--.....+.||++||++|+||.++++.... +...+...... ..-.-.+..-+..+|+++....+.+
T Consensus 154 GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~--ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lsl 231 (325)
T KOG0649|consen 154 GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSM--IEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSL 231 (325)
T ss_pred CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEE--eccccChhhcCcccCceeEEEeccCceEEecCCCceeE
Confidence 9999999999866667899999999999999999765332 21111111000 1112245566778899988889999
Q ss_pred EecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeC
Q 001295 970 FETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHP 1049 (1106)
Q Consensus 970 ~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 1049 (1106)
|.++..++...+.. ..+|..+.|. ...++++++...|.-|.+. |.+...+. -++ ..-+..+..-+|
T Consensus 232 whLrsse~t~vfpi---pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip------~~s--~~c~s~s~~~~p 297 (325)
T KOG0649|consen 232 WHLRSSESTCVFPI---PARVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIP------VES--TACYSASWQTSP 297 (325)
T ss_pred EeccCCCceEEEec---ccceeEeeee--cceEEEeccccceeeeeec-cEEEEecc------CCc--cceeeecccCCc
Confidence 99999999988876 4577888885 4477778888889999865 45544444 111 001211222333
Q ss_pred CCCCEEEEEeCCCcEEEEe
Q 001295 1050 QEPNEFALGLSDGGVHVFE 1068 (1106)
Q Consensus 1050 ~d~~~l~t~~~Dg~v~vW~ 1068 (1106)
-+++-.++..+.+.|..
T Consensus 298 --~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 298 --IKFISIAGFSNKLHILK 314 (325)
T ss_pred --eEEEEecccceeeeeee
Confidence 45666666667776653
No 179
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.76 E-value=8.3e-17 Score=154.30 Aligned_cols=258 Identities=16% Similarity=0.255 Sum_probs=187.5
Q ss_pred ccCCCCcEEEEEecCCCeEEEEEecc-------CcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEE
Q 001295 347 LNQGSSPMSMDFHPVQQTLLLVGTNV-------GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 419 (1106)
Q Consensus 347 ~~h~~~v~~~~~sp~g~~llatg~~d-------g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 419 (1106)
+.|.++|+.++-+|..+.+|+|...+ ..+.||.+....... +.. .......+-..+-+.|.|+.
T Consensus 60 ~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S--~~~-------tlE~v~~Ldteavg~i~cve 130 (370)
T KOG1007|consen 60 FHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS--NSS-------TLECVASLDTEAVGKINCVE 130 (370)
T ss_pred hcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc--ccc-------hhhHhhcCCHHHhCceeeEE
Confidence 34789999999999988899987663 247788876432221 000 01111112235566999999
Q ss_pred EccCCCEEEEEeCCCeEEEEEccCCcee-eeee--eeccccCCeeEEEEcC--CCCceEEEEecCCCcEEEEeCCCCcee
Q 001295 420 WSPDGSLFGVAYSRHIVQIYSYHGGDEV-RQHL--EIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAKQ 494 (1106)
Q Consensus 420 ~spdg~~las~~~d~~v~iwd~~~~~~~-~~~~--~l~~h~~~V~~~~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~~ 494 (1106)
|.|++..||+-. |..|.+|++..+..+ ..+. .-.+|....++-+|+| |+. .+++. .|+++..||+++.++.
T Consensus 131 w~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~tt-~d~tl~~~D~RT~~~~ 206 (370)
T KOG1007|consen 131 WEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVATT-SDSTLQFWDLRTMKKN 206 (370)
T ss_pred EcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEEe-CCCcEEEEEccchhhh
Confidence 999999999875 788999999977652 2110 1123566788899998 555 45554 4799999999998877
Q ss_pred EEEe-ccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCC-ceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEE
Q 001295 495 YIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 572 (1106)
Q Consensus 495 ~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~ 572 (1106)
..+. .|...|..+.|+|+.. .+|++|+.||.|++||.+..+ ++..+..|.++|.++.|.|...
T Consensus 207 ~sI~dAHgq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hd-------------- 271 (370)
T KOG1007|consen 207 NSIEDAHGQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHD-------------- 271 (370)
T ss_pred cchhhhhcceeeeccCCCCce-EEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccc--------------
Confidence 6654 6888999999988765 689999999999999998754 5668899999999999988765
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCcc-----------------------------eeEEEccCCCCCCcCeEEEcc-CC
Q 001295 573 QFDTTKNRFLAAGDDFSIKFWDMDSVQ-----------------------------LLTSIDADGGLPASPRIRFNK-DG 622 (1106)
Q Consensus 573 ~~~~~~~~l~~~~~d~~i~iwd~~~~~-----------------------------~~~~~~~~~~~~~v~~v~~s~-~~ 622 (1106)
+.+++|+.|..|.+|.+.+-. .+.++.. +...|.+++|+. |.
T Consensus 272 ------qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyde--hEDSVY~~aWSsadP 343 (370)
T KOG1007|consen 272 ------QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDE--HEDSVYALAWSSADP 343 (370)
T ss_pred ------eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccc--cccceEEEeeccCCC
Confidence 357788888888888754211 1123333 355799999998 66
Q ss_pred CEEEEEeCCCcEEEEEcc
Q 001295 623 CLLAVSTNDNGIKILATS 640 (1106)
Q Consensus 623 ~~l~~~~~dg~i~iwd~~ 640 (1106)
-.+|+-+.||.+.|=.+.
T Consensus 344 WiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 344 WIFASLSYDGRVIISSVP 361 (370)
T ss_pred eeEEEeccCceEEeecCC
Confidence 778888999999876553
No 180
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1e-17 Score=190.52 Aligned_cols=278 Identities=13% Similarity=0.173 Sum_probs=210.1
Q ss_pred cCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCce----EEEeecCceEEEeeccccccCCCCccccccC
Q 001295 713 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA----ILALASNAIHLLWKWQRTERNSSGKATASVA 788 (1106)
Q Consensus 713 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~----l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 788 (1106)
+.+.++.+|.+........++.... .....+...++|.+.+.. |+.|..||.|.+|+...-..
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s--~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~----------- 102 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGS--LQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA----------- 102 (1049)
T ss_pred ccccccceeeecccCcccccccccc--ccccccceeeeecccCCCccceeeccccCCceEEecchhhcc-----------
Confidence 5566777777765444432221111 114567789999988776 77777899999998753100
Q ss_pred ccccCCCCCCccccccCCCCCCCCeeEEEEecCCC-EEEEEe-CCeEEEEEcCCCceeeeec--CCCCCeeEEEEecCCC
Q 001295 789 PQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFM--PPPPAATFLAFHPQDN 864 (1106)
Q Consensus 789 ~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~s-dg~i~vwd~~~~~~~~~~~--~~~~~v~~l~~s~~d~ 864 (1106)
.+. .........|.+.|..+.|++... +||+|+ ||.|.|||+...+...++. .....|.+++|.....
T Consensus 103 -------~~~-~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvq 174 (1049)
T KOG0307|consen 103 -------NAS-EEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVS 174 (1049)
T ss_pred -------Ccc-hHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhh
Confidence 111 000011124999999999999776 899998 7999999999766555542 2456899999998778
Q ss_pred ceEEEeeCCCcEEEEEeecceEEEEecCccc--CeeEEEEecCC-CEEEEEcCCC---cEEEEeCCCcccccceeecccC
Q 001295 865 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK--RITGLAFSHAL-NVLVSSGADS---QLCVWSSDGWEKQKNRFLQIPT 938 (1106)
Q Consensus 865 ~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~--~V~~l~~s~d~-~~l~s~s~Dg---~i~vwd~~~~~~~~~~~~~~~~ 938 (1106)
++||+++.+|.+.|||++..+.+-.+..|.+ .+..|+|+|++ ..|++++.|. .|.+||++.- ...+++..
T Consensus 175 hILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a----ssP~k~~~ 250 (1049)
T KOG0307|consen 175 HILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA----SSPLKILE 250 (1049)
T ss_pred HHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc----CCchhhhc
Confidence 9999999999999999999888888877665 46789999986 4566666553 5999998763 33566667
Q ss_pred CCCCCCCCCceEEEcCCC-cEEEE-EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCC-EEEEEEcCCeEEEEE
Q 001295 939 GRTPTAQSDTRVQFHQDQ-IHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACFLDATVCVFS 1015 (1106)
Q Consensus 939 ~~~~~~~~i~~~~~s~dg-~~l~~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~-~l~t~s~Dg~i~vwd 1015 (1106)
+|.. .|.++.|++.+ ++|++ +.|++|.+|+.++++.+..+.. ...++..+.|+|..- .+++++-||.|.|+.
T Consensus 251 ~H~~---GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~--~~nW~fdv~w~pr~P~~~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 251 GHQR---GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA--QGNWCFDVQWCPRNPSVMAAASFDGKISIYS 325 (1049)
T ss_pred cccc---ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC--CCcceeeeeecCCCcchhhhheeccceeeee
Confidence 7775 89999999977 77777 6999999999999999999874 478999999999665 789999999999999
Q ss_pred cCCce
Q 001295 1016 AANLK 1020 (1106)
Q Consensus 1016 ~~~~~ 1020 (1106)
+.++.
T Consensus 326 l~~~~ 330 (1049)
T KOG0307|consen 326 LQGTD 330 (1049)
T ss_pred eecCC
Confidence 97664
No 181
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.75 E-value=1.9e-16 Score=154.53 Aligned_cols=344 Identities=13% Similarity=0.177 Sum_probs=236.4
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEE-eCCCcEEEEEccCCchhhhhh
Q 001295 571 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKILATSDGIRLLRTF 649 (1106)
Q Consensus 571 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~ 649 (1106)
-.+|+|+|+++++.+.- .+.|-|..+-+..+.+..- ..|.-+.|..|.-+++++ ..++.|.+|++... +-...+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl---dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp-ew~ckI 87 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL---DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP-EWYCKI 87 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHH---HHhhheeeeccceeeeeeeeccceEEEEEeecc-eeEEEe
Confidence 35688888899988765 7888888877665555432 246678899887776655 66889999998654 111100
Q ss_pred cccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCC
Q 001295 650 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 729 (1106)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~ 729 (1106)
T Consensus 88 -------------------------------------------------------------------------------- 87 (447)
T KOG4497|consen 88 -------------------------------------------------------------------------------- 87 (447)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceecccCccccccceEEEEEcCCCceEEEeec-CceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCC
Q 001295 730 NQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN 808 (1106)
Q Consensus 730 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 808 (1106)
......+..+++||||+.++..++ +-.|.+|.+.+.+ +..+. .
T Consensus 88 ----------deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~--------------------~~~~~--~---- 131 (447)
T KOG4497|consen 88 ----------DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK--------------------GYLLP--H---- 131 (447)
T ss_pred ----------ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce--------------------eEEec--c----
Confidence 114567889999999987776666 7888888876321 11111 1
Q ss_pred CCCCeeEEEEecCCCEEEEEe--C--CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeC--CCcEEEEEee
Q 001295 809 PEEAVPCFALSKNDSYVMSAS--G--GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD--DSSIQIYNVR 882 (1106)
Q Consensus 809 ~~~~v~~l~~s~~~~~l~~~s--d--g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~--dg~v~iwd~~ 882 (1106)
....+..++|+|||++.+..+ | .-+.|..-.....++.+....-..+.+.|+| ||..||+=.. +-.|+.|.
T Consensus 132 pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP-dg~~laVwd~~Leykv~aYe-- 208 (447)
T KOG4497|consen 132 PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP-DGNWLAVWDNVLEYKVYAYE-- 208 (447)
T ss_pred cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC-CCcEEEEecchhhheeeeee--
Confidence 344568899999999999887 3 2255555555666777777777889999999 8877775321 11222222
Q ss_pred cceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCccccc--------------------------------
Q 001295 883 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK-------------------------------- 930 (1106)
Q Consensus 883 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~-------------------------------- 930 (1106)
-.-.+..++|+|.+++|+.|+.|+.+||-+--+++...
T Consensus 209 ----------~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLs 278 (447)
T KOG4497|consen 209 ----------RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLS 278 (447)
T ss_pred ----------eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccc
Confidence 12457789999999999999999999887644332211
Q ss_pred --------------------------ceeecccCCCCCCCCCCceEEEcCCCcEEEEEeC---CeEEEEecCCceEeeec
Q 001295 931 --------------------------NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE---TQLAIFETTKLECVKQW 981 (1106)
Q Consensus 931 --------------------------~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d---~~v~i~d~~~~~~~~~~ 981 (1106)
...++...........+..++||+|..++++-.| +.+-+||+...+....+
T Consensus 279 f~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL 358 (447)
T KOG4497|consen 279 FTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL 358 (447)
T ss_pred cCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh
Confidence 0111222233333456788999999999999655 47999999988776555
Q ss_pred ccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCC
Q 001295 982 VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD 1061 (1106)
Q Consensus 982 ~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~D 1061 (1106)
. ...+|....|.|....|+.+.....+++|....-..++.-. . +..|. .+.|+- +|..++..+.|
T Consensus 359 i---Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~-------~--GF~i~--~l~W~~-~g~~i~l~~kD 423 (447)
T KOG4497|consen 359 I---QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK-------K--GFNIQ--KLQWLQ-PGEFIVLCGKD 423 (447)
T ss_pred h---hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCC-------C--Cceee--eEEecC-CCcEEEEEcCC
Confidence 3 36799999999999998888878889999977644443211 1 22344 899997 58889988888
Q ss_pred Cc
Q 001295 1062 GG 1063 (1106)
Q Consensus 1062 g~ 1063 (1106)
.-
T Consensus 424 af 425 (447)
T KOG4497|consen 424 AF 425 (447)
T ss_pred ce
Confidence 63
No 182
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.2e-16 Score=157.34 Aligned_cols=151 Identities=18% Similarity=0.262 Sum_probs=118.2
Q ss_pred EEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEE
Q 001295 473 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMA 552 (1106)
Q Consensus 473 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 552 (1106)
.++++-..|.|++||..+++.+..++++...++.+.|......+.+.+|+.||+|++||++.......+.....+
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~----- 116 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS----- 116 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC-----
Confidence 688888899999999999999999999999999999876545578999999999999999986554333222111
Q ss_pred EecCCCeEEEeeeccceeEEEEcCCCCEEEEEE----CCCeEEEEECCCcce-eEEEccCCCCCCcCeEEEcc-CCCEEE
Q 001295 553 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG----DDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNK-DGCLLA 626 (1106)
Q Consensus 553 ~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~-~~~~l~ 626 (1106)
..+..+++.+-.++.+++|. .+..|.+||++..+. +..+ ...|...|+++.|+| +.++|+
T Consensus 117 -------------~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~-~eSH~DDVT~lrFHP~~pnlLl 182 (376)
T KOG1188|consen 117 -------------GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQL-NESHNDDVTQLRFHPSDPNLLL 182 (376)
T ss_pred -------------CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhh-hhhccCcceeEEecCCCCCeEE
Confidence 12445555555666677765 478899999998776 5444 234567899999999 788999
Q ss_pred EEeCCCcEEEEEccCC
Q 001295 627 VSTNDNGIKILATSDG 642 (1106)
Q Consensus 627 ~~~~dg~i~iwd~~~~ 642 (1106)
+|+.||.|.++|+...
T Consensus 183 SGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 183 SGSVDGLVNLFDTKKD 198 (376)
T ss_pred eecccceEEeeecCCC
Confidence 9999999999998654
No 183
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.75 E-value=1.4e-15 Score=168.02 Aligned_cols=279 Identities=10% Similarity=0.118 Sum_probs=178.4
Q ss_pred cccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeec-CceEEEeeccccccCCCCcccccc
Q 001295 709 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASV 787 (1106)
Q Consensus 709 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~ 787 (1106)
.++...++.|.+|++...........+. .......++++|++++|++++. ++.|.+|++..
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-----~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~------------- 66 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-----VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIAD------------- 66 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-----cCCCCccEEECCCCCEEEEEECCCCcEEEEEECC-------------
Confidence 3455678999999996422212222221 2345678899999998877654 68888888741
Q ss_pred CccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCC-Cc---eeeeecCCCCCeeEEEEec
Q 001295 788 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FK---TMATFMPPPPAATFLAFHP 861 (1106)
Q Consensus 788 ~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~-~~---~~~~~~~~~~~v~~l~~s~ 861 (1106)
+|.+..... .........++++|+++++++++ ++.|.+|++.+ +. .+..+. +.....+++++|
T Consensus 67 --------~g~l~~~~~--~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p 135 (330)
T PRK11028 67 --------DGALTFAAE--SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP 135 (330)
T ss_pred --------CCceEEeee--ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC
Confidence 111100000 00223457899999999999887 68999999974 22 222222 223467789999
Q ss_pred CCCceE-EEeeCCCcEEEEEeecceEEE-------EecCcccCeeEEEEecCCCEEEEEcC-CCcEEEEeCCCc--cccc
Q 001295 862 QDNNII-AIGMDDSSIQIYNVRVDEVKS-------KLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGW--EKQK 930 (1106)
Q Consensus 862 ~d~~~l-a~g~~dg~v~iwd~~~~~~~~-------~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~~--~~~~ 930 (1106)
+++++ ++...++.|.+||+.+...+. .... ......++|+|||++|+++.. +++|.+|+++.. +...
T Consensus 136 -~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~ 213 (330)
T PRK11028 136 -DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIEC 213 (330)
T ss_pred -CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEE
Confidence 77666 455567999999997632221 1111 234578999999999988876 899999999742 2211
Q ss_pred ceeecccCCCCCCCCCCceEEEcCCCcEEEEE--eCCeEEEEecCCce----EeeecccCCCCCCeeEEEECCCCCEEEE
Q 001295 931 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE----CVKQWVPRESSAPITHATFSCDSQLVYA 1004 (1106)
Q Consensus 931 ~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~d~~v~i~d~~~~~----~~~~~~~~~h~~~v~~l~~s~d~~~l~t 1004 (1106)
...+...............+.|+|+|++++++ .++.|.+|++.... .+..... ......+.|+|||++|++
T Consensus 214 ~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~---~~~p~~~~~~~dg~~l~v 290 (330)
T PRK11028 214 VQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT---ETQPRGFNIDHSGKYLIA 290 (330)
T ss_pred EEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec---cccCCceEECCCCCEEEE
Confidence 11111111111111223468999999999996 46799999985432 2232221 124567899999999998
Q ss_pred EEc-CCeEEEEEcC--Ccee
Q 001295 1005 CFL-DATVCVFSAA--NLKL 1021 (1106)
Q Consensus 1005 ~s~-Dg~i~vwd~~--~~~~ 1021 (1106)
++. +++|.+|+++ ++.+
T Consensus 291 a~~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 291 AGQKSHHISVYEIDGETGLL 310 (330)
T ss_pred EEccCCcEEEEEEcCCCCcE
Confidence 775 8999999874 4443
No 184
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=7.9e-17 Score=158.60 Aligned_cols=198 Identities=13% Similarity=0.176 Sum_probs=149.4
Q ss_pred EEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc--CCCEEEEEeCCCeEEEEEcc
Q 001295 365 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGSLFGVAYSRHIVQIYSYH 442 (1106)
Q Consensus 365 llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~las~~~d~~v~iwd~~ 442 (1106)
.+|++-..|.|++||..+++.+.. +++|...+..++|.. ....+.+|+.||+|++||++
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 588888899999999999887763 688888899999987 46778999999999999999
Q ss_pred CCceeeeeeeecccc-CCeeEEEEcCCCCceEEEEec----CCCcEEEEeCCCCce-eEE-EeccCCCeEEEeccccCCc
Q 001295 443 GGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCG----DDKTIKVWDATNGAK-QYI-FEGHEAPVYSVCPHHKENI 515 (1106)
Q Consensus 443 ~~~~~~~~~~l~~h~-~~V~~~~~s~d~~~~~l~s~~----~d~~i~iwd~~~~~~-~~~-~~~h~~~v~~~~~~~~~~~ 515 (1106)
+......+ .+.+|. .+..+++..-.++ ++++|. .+-.|.+||++..+. +.. ...|...|++++|+|+..
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p- 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP- 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC-
Confidence 87665433 345565 4667777765666 677665 467899999998766 544 456999999999998765
Q ss_pred eEEEEEecCCeEEEEeCCCCCce---eEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEE
Q 001295 516 QFIFSTALDGKIKAWLYDNLGSR---VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 592 (1106)
Q Consensus 516 ~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 592 (1106)
++|++|+.||.|.+||+...... .....+...|..+.|..++- ..+.+-+...+..+
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~y--------------------krI~clTH~Etf~~ 238 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKY--------------------KRIMCLTHMETFAI 238 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCc--------------------ceEEEEEccCceeE
Confidence 79999999999999999754221 11222334455666655551 23778888899999
Q ss_pred EECCCcceeEEEc
Q 001295 593 WDMDSVQLLTSID 605 (1106)
Q Consensus 593 wd~~~~~~~~~~~ 605 (1106)
|++..+.....+.
T Consensus 239 ~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 239 YELEDGSEETWLE 251 (376)
T ss_pred EEccCCChhhccc
Confidence 9999887555443
No 185
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=1.2e-15 Score=152.13 Aligned_cols=241 Identities=14% Similarity=0.203 Sum_probs=184.1
Q ss_pred CCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCC--cEEEEEeecceEE
Q 001295 810 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVK 887 (1106)
Q Consensus 810 ~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg--~v~iwd~~~~~~~ 887 (1106)
...+..+.|..+...|..|+....++|+.+..............|.-+-||. .++|..+.+. .+++++.+.+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence 4456777899999999999966678888876554333333444577777875 4666665544 5999999888877
Q ss_pred EEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-E--eC
Q 001295 888 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V--HE 964 (1106)
Q Consensus 888 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~--~d 964 (1106)
..+. ...+|.+|.+. .+.|+++=.+. |.|||+++.+. +.......+....+.++.+++++.++|. + ..
T Consensus 82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~Mkl-----LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKL-----LHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEeccccee-----ehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence 7765 45668888886 44666665554 99999998554 3333332222234566666667779998 3 56
Q ss_pred CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCe-EEEEEcCCceeEEeeCCCcccCCCCCCCCccce
Q 001295 965 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1043 (1106)
Q Consensus 965 ~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1043 (1106)
|.|.+||+.+.+.+..+. .|.+++.+++|+++|.+|||+|+.|+ ||||.+.+|+.+.++....+ + +...
T Consensus 153 GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~-------~~Iy 222 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTIN--AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-P-------VSIY 222 (391)
T ss_pred ceEEEEEcccceeeeEEE--ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-e-------eEEE
Confidence 899999999999999887 89999999999999999999999998 89999999999998883333 2 3334
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295 1044 VIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus 1044 ~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
+++|+| |+++|.+.+..++|+++.+++..
T Consensus 223 SL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 223 SLSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 999999 78999999999999999998876
No 186
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=3.7e-16 Score=155.54 Aligned_cols=172 Identities=16% Similarity=0.237 Sum_probs=129.0
Q ss_pred eeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCC------CCceeEEEec-cCCCeEEEeccccCCceEEEEEecC
Q 001295 452 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT------NGAKQYIFEG-HEAPVYSVCPHHKENIQFIFSTALD 524 (1106)
Q Consensus 452 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~------~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~d 524 (1106)
.+.+|.+.|+++.|+.+++ +|++|+.|..+++|++. +.+++..... |...|.|++|... ...+++|+.+
T Consensus 51 D~~~H~GCiNAlqFS~N~~--~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~--N~~~~SG~~~ 126 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDR--FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE--NRFLYSGERW 126 (609)
T ss_pred hhhhhccccceeeeccCCe--EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC--CeeEecCCCc
Confidence 4678999999999999998 89999999999999986 3466665544 4588999998533 3789999999
Q ss_pred CeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcc-eeEE
Q 001295 525 GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTS 603 (1106)
Q Consensus 525 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~ 603 (1106)
++|...|+++.+.+..+..... .+.+..+..+|..+.|++.+.++.|.+||.+... .+..
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~-------------------~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~ 187 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNN-------------------RGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL 187 (609)
T ss_pred ceeEeeecccceeeeeecccCc-------------------ccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce
Confidence 9999999998766554433221 1244455566666789999999999999998755 3333
Q ss_pred EccCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEccCCchhh
Q 001295 604 IDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLL 646 (1106)
Q Consensus 604 ~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~ 646 (1106)
+..........++.|+| ...+|++.+..+.+-+||.+.....+
T Consensus 188 ~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~ 231 (609)
T KOG4227|consen 188 VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPV 231 (609)
T ss_pred eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchH
Confidence 32222234567899999 56778888889999999987664433
No 187
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.74 E-value=1.9e-15 Score=166.83 Aligned_cols=252 Identities=11% Similarity=0.101 Sum_probs=164.9
Q ss_pred CCCeeEEEEecCCCEEEEEe--CCeEEEEEcC-CCce--eeeecCCCCCeeEEEEecCCCceEEEee-CCCcEEEEEeec
Q 001295 810 EEAVPCFALSKNDSYVMSAS--GGKISLFNMM-TFKT--MATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRV 883 (1106)
Q Consensus 810 ~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~-~~~~--~~~~~~~~~~v~~l~~s~~d~~~la~g~-~dg~v~iwd~~~ 883 (1106)
......++++|++++|++++ ++.|.+|++. +++. ..... .......++|+| ++++|++++ .++.|.+|++.+
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECC
Confidence 34567789999999988775 6889999997 3332 22222 233567899999 777776665 488999999974
Q ss_pred -c---eEEEEecCcccCeeEEEEecCCCEEEE-EcCCCcEEEEeCCCcccccc---eeecccCCCCCCCCCCceEEEcCC
Q 001295 884 -D---EVKSKLKGHSKRITGLAFSHALNVLVS-SGADSQLCVWSSDGWEKQKN---RFLQIPTGRTPTAQSDTRVQFHQD 955 (1106)
Q Consensus 884 -~---~~~~~l~~h~~~V~~l~~s~d~~~l~s-~s~Dg~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~s~d 955 (1106)
+ +.+..+.+ .....+++++|+++++++ ...++.|.+||+.+...... .......+ .....++|+||
T Consensus 112 ~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-----~~p~~~~~~pd 185 (330)
T PRK11028 112 DGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-----AGPRHMVFHPN 185 (330)
T ss_pred CCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-----CCCceEEECCC
Confidence 3 22333332 234677899999998855 45669999999986332110 11112222 34678999999
Q ss_pred CcEEEEE--eCCeEEEEecCC--c--eEeeecccC----CCCCCeeEEEECCCCCEEEEEEc-CCeEEEEEcCCceeEEe
Q 001295 956 QIHFLVV--HETQLAIFETTK--L--ECVKQWVPR----ESSAPITHATFSCDSQLVYACFL-DATVCVFSAANLKLRCR 1024 (1106)
Q Consensus 956 g~~l~~~--~d~~v~i~d~~~--~--~~~~~~~~~----~h~~~v~~l~~s~d~~~l~t~s~-Dg~i~vwd~~~~~~~~~ 1024 (1106)
|++++++ .++.|.+|++.. + +.+..+... .+......+.|+||+++|+++.. +++|.+|+++.......
T Consensus 186 g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~ 265 (330)
T PRK11028 186 QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLS 265 (330)
T ss_pred CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEE
Confidence 9999885 478999999973 2 233332210 11223446899999999998864 68999999964331111
Q ss_pred eCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeC-CCcEEEEeecCCCCccC
Q 001295 1025 INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS-DGGVHVFEPLESEGKWG 1077 (1106)
Q Consensus 1025 ~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~-Dg~v~vW~~~~~~~~~~ 1077 (1106)
+. ...+.+ ..|..+.++| ||++|+++.. +++|.+|+++...+.+.
T Consensus 266 ~~--~~~~~~-----~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~~~~g~l~ 311 (330)
T PRK11028 266 FE--GHQPTE-----TQPRGFNIDH-SGKYLIAAGQKSHHISVYEIDGETGLLT 311 (330)
T ss_pred Ee--EEEecc-----ccCCceEECC-CCCEEEEEEccCCcEEEEEEcCCCCcEE
Confidence 11 011111 2233689999 6888877664 89999999875443343
No 188
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=2.1e-17 Score=173.39 Aligned_cols=229 Identities=16% Similarity=0.280 Sum_probs=180.5
Q ss_pred ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEcc-----CCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCC
Q 001295 407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYH-----GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 481 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~-----~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~ 481 (1106)
++..|.+.|+.++|.|....|++++.||++++|++. ....+.++.+|.+|.++|.|+++.++++ .+++||.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 578899999999999999999999999999999993 3345678889999999999999999999 899999999
Q ss_pred cEEEEeCCC------C----ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCC--CeeE
Q 001295 482 TIKVWDATN------G----AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG--RWCT 549 (1106)
Q Consensus 482 ~i~iwd~~~------~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~ 549 (1106)
+|+.|++.. . .....+.||.+.|+.++++... ..|++++.||+++.|+...... ..+.... +...
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 999996541 1 2335788999999999998776 4699999999999998876544 2222111 1112
Q ss_pred EEEEecCCC-----------------------eEEEe------eeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcce
Q 001295 550 TMAYSADGT-----------------------RTYQG------FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL 600 (1106)
Q Consensus 550 ~~~~s~~~~-----------------------~~~~~------~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 600 (1106)
++.+..... .++.. .....+..+.++|...+.+++.+|+.|+++|..+++.
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~ 523 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI 523 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc
Confidence 222211110 11111 1123566788899999999999999999999999999
Q ss_pred eEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 601 LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 601 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
+.....| ...++++++.|+|.+|++++.|+.+++|.+...
T Consensus 524 l~s~~a~--~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 524 LHSMVAH--KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred chheeec--cceecceeecCCCceEEeecCCceeehhhccch
Confidence 9888766 457999999999999999999999999987654
No 189
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.9e-15 Score=163.74 Aligned_cols=607 Identities=11% Similarity=0.089 Sum_probs=341.4
Q ss_pred CCCCCCCCcceeeecc-CCCCcEEEEEecC-----------CCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCC
Q 001295 333 FSTPEDLPKTVTRTLN-QGSSPMSMDFHPV-----------QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACS 400 (1106)
Q Consensus 333 ~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~-----------g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~ 400 (1106)
+...|....+..+.+. |...|+.+.|.|- ...+||++...|.|.|||...+..+..
T Consensus 37 V~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~------------ 104 (1062)
T KOG1912|consen 37 VSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW------------ 104 (1062)
T ss_pred EEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh------------
Confidence 3344566667777777 8899999999873 334788888899999999988776652
Q ss_pred ccccccccCCCCcCeEEEEEcc---CC-CEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEE
Q 001295 401 MPLQAALVKDPGVSVNRVIWSP---DG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVIT 476 (1106)
Q Consensus 401 ~~~~~~~~~~h~~~V~~l~~sp---dg-~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s 476 (1106)
+..|..+|..++|-+ +. ..|++-....+|.+|+..+|+.+- ....-.....|+.+.|-+.. .+..
T Consensus 105 -------l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~W---k~~ys~~iLs~f~~DPfd~r-h~~~ 173 (1062)
T KOG1912|consen 105 -------LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFW---KYDYSHEILSCFRVDPFDSR-HFCV 173 (1062)
T ss_pred -------hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceee---ccccCCcceeeeeeCCCCcc-eEEE
Confidence 678889999999987 34 456666777899999999998664 23333456677888886655 3433
Q ss_pred ecCCCcEEEEeCC-------CCceeEEEeccCC----------------C-------eEEE--eccccCCceEEEEEecC
Q 001295 477 CGDDKTIKVWDAT-------NGAKQYIFEGHEA----------------P-------VYSV--CPHHKENIQFIFSTALD 524 (1106)
Q Consensus 477 ~~~d~~i~iwd~~-------~~~~~~~~~~h~~----------------~-------v~~~--~~~~~~~~~~l~s~~~d 524 (1106)
-+..|.+.+-+.- .|+..+.-..|.. . ..+. +|+|.. +-++-....
T Consensus 174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~--rn~lfi~~p 251 (1062)
T KOG1912|consen 174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHW--RNILFITFP 251 (1062)
T ss_pred EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhh--hceEEEEec
Confidence 3445555555432 1333333333322 0 0111 233333 233444456
Q ss_pred CeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCC-------
Q 001295 525 GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS------- 597 (1106)
Q Consensus 525 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~------- 597 (1106)
..+.++|++-...+.....+.+.+.-+.+-|++++ ..|++.-.||.+.+|-.+.
T Consensus 252 rellv~dle~~~~l~vvpier~~akfv~vlP~~~r-------------------d~LfclH~nG~ltirvrk~~~~~f~~ 312 (1062)
T KOG1912|consen 252 RELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRR-------------------DALFCLHSNGRLTIRVRKEEPTEFKK 312 (1062)
T ss_pred cceEEEcchhhceeEEEEeccCCcceeEeccCCCc-------------------ceEEEEecCCeEEEEEeeccCccccc
Confidence 77889998877777666666666666666676653 3588888999999997654
Q ss_pred ---------cceeEEEccCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccC--------
Q 001295 598 ---------VQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT-------- 659 (1106)
Q Consensus 598 ---------~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-------- 659 (1106)
++....+..-+...++ .....| +...++.-..+|...+|.+.++........+........
T Consensus 313 ~~~~l~~dl~~Q~~~vr~m~~~rp~-~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~ 391 (1062)
T KOG1912|consen 313 PNASLSMDLGEQVHVVRPMEEFRPV-IGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKL 391 (1062)
T ss_pred cchhhccccccceEEEeechhcccc-eeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceee
Confidence 2222222221211122 222333 245555556678888998886621111111011000000
Q ss_pred -CCCCCCCcCchhhhHhhhhccccccccccccccc--CCCCCCccc-cCCCCccccccCCCceeeEecCCCCCCccceec
Q 001295 660 -SENSKPTISPISAAAAAAATSAGLADRAASMVSI--PGMNGDVRS-LADVKPRITEESNDKSKVWKLTELSEPNQCRSL 735 (1106)
Q Consensus 660 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~ 735 (1106)
.......++.++.- .....+.+..|+... ..-.+.... ...-..++.|...|+|.++|+........+.
T Consensus 392 v~k~~l~~LS~dg~h-----~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fs-- 464 (1062)
T KOG1912|consen 392 VGKTSLISLSDDGSH-----SSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFS-- 464 (1062)
T ss_pred hhhccccchhhcCCC-----CCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhc--
Confidence 00000011111100 000001111111111 110111111 1123456889999999999998755443332
Q ss_pred ccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeE
Q 001295 736 RLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 815 (1106)
Q Consensus 736 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~ 815 (1106)
.|...|.++.|..+.+.+-.+.+. . .+........+.+-|+.+|.-....-.......+|+.
T Consensus 465 -----vht~~VkgleW~g~sslvSfsys~-~------------n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~ 526 (1062)
T KOG1912|consen 465 -----VHTSLVKGLEWLGNSSLVSFSYSH-V------------NSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRA 526 (1062)
T ss_pred -----ccccceeeeeeccceeEEEeeecc-c------------cccccceeeeEEEEEcccccccccccCCCCCcCccee
Confidence 388899999998887744333321 0 0001111123445666677644332112246789999
Q ss_pred EEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCC----------------ceEEEeeCCCcEEE
Q 001295 816 FALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN----------------NIIAIGMDDSSIQI 878 (1106)
Q Consensus 816 l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~----------------~~la~g~~dg~v~i 878 (1106)
+..|.-++|++..- +.-+.+||+++..+++.....-.-|+.++|+-..- +..+..+ +..++
T Consensus 527 irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds--~es~~ 604 (1062)
T KOG1912|consen 527 IRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDS--VESRI 604 (1062)
T ss_pred eeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhceeeecc--ccchh
Confidence 99999999999998 88899999998887776654444588999982121 1233333 22333
Q ss_pred EEee-c------ceE-EEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceE
Q 001295 879 YNVR-V------DEV-KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV 950 (1106)
Q Consensus 879 wd~~-~------~~~-~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 950 (1106)
+.+. . +.. ....+.....+..++|- +..|+.|+.+|.+.+||+....... ... ...........
T Consensus 605 ~~~~~~a~~~sdgsq~~~a~esfafal~~mAwk--~d~lv~GD~~GNl~~WDlg~R~SRg--~~d----~p~~ra~~l~~ 676 (1062)
T KOG1912|consen 605 YHITLSALVVSDGSQVNTAWESFAFALCAMAWK--DDILVVGDVEGNLVVWDLGRRQSRG--VRD----SPDPRAHSLTF 676 (1062)
T ss_pred eehhhhhhhhccccchhhHHHHHHHHHHhhhcc--CCeeEeecccCceeEEecccccccC--ccC----CCCchhhheec
Confidence 3322 1 111 11111112234446774 6799999999999999986532111 011 11111122334
Q ss_pred EEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCcee
Q 001295 951 QFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1021 (1106)
Q Consensus 951 ~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~ 1021 (1106)
.+-|....+++-....+.+||.+....+..+.....+-.+..+.+......++. .|.++|+--+.....
T Consensus 677 ~~ipG~~~~lvl~~d~~~lwdtk~~~lV~siag~dssfrlldvdlc~~~~~~l~--~d~~~Rf~~m~mks~ 745 (1062)
T KOG1912|consen 677 PQIPGDHTTLVLELDWLPLWDTKADTLVLSIAGMDSSFRLLDVDLCEKSPLVLP--NDNKERFRVMPMKSP 745 (1062)
T ss_pred ccCCCCceEEEEecCcceecccccceeeeeeccCCcceEEEEEEecccCceecC--CCCceeEEeccccCC
Confidence 445554455555666788999988888777742222445556666554444442 344888776665443
No 190
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.73 E-value=6e-18 Score=184.21 Aligned_cols=244 Identities=17% Similarity=0.299 Sum_probs=187.1
Q ss_pred ceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEc
Q 001295 342 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 421 (1106)
Q Consensus 342 ~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 421 (1106)
.+..+++|...|.|++|...|+| +++|+.|..|+||..+++.++.. ..||++.|+.++.+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~-Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs 241 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRY-IITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVS 241 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccce-EeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccc
Confidence 35566789999999999999997 99999999999999999998874 79999999999999
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEE---Ee
Q 001295 422 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI---FE 498 (1106)
Q Consensus 422 pdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~~ 498 (1106)
.+..++|+++.|..|++|.+.++..+. .+.||++.|++++|+|- .+.+.||++++||.+-.-.+.. +.
T Consensus 242 ~~n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~ 312 (1113)
T KOG0644|consen 242 SNNTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLK 312 (1113)
T ss_pred hhhhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCC
Confidence 999999999999999999999998776 68999999999999984 4788999999999871111111 11
Q ss_pred c-cCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCC
Q 001295 499 G-HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 577 (1106)
Q Consensus 499 ~-h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~ 577 (1106)
. ....+.++.| ..++..+.||+.|+.-..|.+.-... +...+.-+..+.+.
T Consensus 313 ~~~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~-------------------- 364 (1113)
T KOG0644|consen 313 FTEKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDL-------------------- 364 (1113)
T ss_pred cccccceeeeec--cccccccccccCCcccccchhhHhhh------hccceEEEeccccc--------------------
Confidence 1 1233444444 34556799999999988886542111 00001111111111
Q ss_pred CCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEccCCch
Q 001295 578 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIR 644 (1106)
Q Consensus 578 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~ 644 (1106)
..+.+++-.+-.+++|++.+|.+.+.+.++.+ .+..+.++| +.....+++.||...|||+..|..
T Consensus 365 ~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd--~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p 430 (1113)
T KOG0644|consen 365 SSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD--EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP 430 (1113)
T ss_pred cccceeeeeeeEeeeeecccchhhhhhccccc--ceeeeeecCCCcHhhhhccCCCceEeeecccCCc
Confidence 12466677788999999999999999988755 677799999 666777899999999999988843
No 191
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2e-16 Score=157.37 Aligned_cols=263 Identities=11% Similarity=0.090 Sum_probs=178.8
Q ss_pred eeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEE-eeeeeeccCcCCccccccccCCCCcCeEEEEEccC
Q 001295 345 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL-RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 423 (1106)
Q Consensus 345 ~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd 423 (1106)
-+++|.+-|+++.||.++++ ||+|+.|..+++|+++..-.... +++.+ .-..|...|.|++|...
T Consensus 51 D~~~H~GCiNAlqFS~N~~~-L~SGGDD~~~~~W~~de~~~~k~~KPI~~-------------~~~~H~SNIF~L~F~~~ 116 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRF-LASGGDDMHGRVWNVDELMVRKTPKPIGV-------------MEHPHRSNIFSLEFDLE 116 (609)
T ss_pred hhhhhccccceeeeccCCeE-EeecCCcceeeeechHHHHhhcCCCCcee-------------ccCccccceEEEEEccC
Confidence 35679999999999999995 99999999999999865322221 11111 12456689999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCc-ee--EEEecc
Q 001295 424 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQ--YIFEGH 500 (1106)
Q Consensus 424 g~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~--~~~~~h 500 (1106)
.++|.+|+.+++|...|+++.+.+... .-....+.|+.+..+|-.. .|++.+.++.|.+||.+... .+ .-+...
T Consensus 117 N~~~~SG~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~ 193 (609)
T KOG4227|consen 117 NRFLYSGERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPANS 193 (609)
T ss_pred CeeEecCCCcceeEeeecccceeeeee-cccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecCC
Confidence 999999999999999999997765421 1122334899999999977 79999999999999988644 22 222223
Q ss_pred CCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCcee-EeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCC
Q 001295 501 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 579 (1106)
Q Consensus 501 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~ 579 (1106)
......+.|+|... .+|++.+..+-+.+||.+...... .+....+ . |. .....-.+.|+|+|+
T Consensus 194 ~~~F~t~~F~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~-L------~~--------~~~~~M~~~~~~~G~ 257 (609)
T KOG4227|consen 194 GKNFYTAEFHPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKG-L------PQ--------ENTEWMGSLWSPSGN 257 (609)
T ss_pred CccceeeeecCCCc-eeEEeccccCCCCceeeccccchHHhhhcccc-C------cc--------cchhhhheeeCCCCC
Confidence 44566777877654 688999999999999998644322 1111000 0 00 000122345666666
Q ss_pred EEEEEECCCeEEEEECCCcce-eEEEccC----CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccC
Q 001295 580 RFLAAGDDFSIKFWDMDSVQL-LTSIDAD----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 641 (1106)
Q Consensus 580 ~l~~~~~d~~i~iwd~~~~~~-~~~~~~~----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 641 (1106)
+|++.-....-.+||+.+.++ +..+... -....+.+++|..|- .+++|+.+=.|++|.+..
T Consensus 258 Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 258 QFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPR 323 (609)
T ss_pred eehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCC
Confidence 777766666666777766433 2233211 112346678887654 489999999999998754
No 192
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=5.2e-16 Score=173.69 Aligned_cols=321 Identities=16% Similarity=0.237 Sum_probs=219.4
Q ss_pred CCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEecc---CCCeEEEec
Q 001295 433 RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH---EAPVYSVCP 509 (1106)
Q Consensus 433 d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h---~~~v~~~~~ 509 (1106)
+..|..||... ..+...+-..+.|+|-.. .++++++.-.|+|||.+.++.+..|..+ ...|+.+++
T Consensus 1049 t~~i~~W~~~~---------~~~n~~~pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~l 1117 (1387)
T KOG1517|consen 1049 TNPIGNWDQKF---------MTGNNQPPKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLEL 1117 (1387)
T ss_pred cccccchHHHH---------HhcCCCCCceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeee
Confidence 34466777542 223334566788888888 6888887789999999999998888654 356888888
Q ss_pred cccCCceEEEEEecCCeEEEEeCCCCC-ceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCC
Q 001295 510 HHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 588 (1106)
Q Consensus 510 ~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 588 (1106)
-...|..++++|+.||.|++|+--... ...++...-..+.++...+.|. . ..++|.....+|+++|+-.
T Consensus 1118 iNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~---------~-~v~dWqQ~~G~Ll~tGd~r 1187 (1387)
T KOG1517|consen 1118 INEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGT---------G-LVVDWQQQSGHLLVTGDVR 1187 (1387)
T ss_pred ecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCC---------C-eeeehhhhCCeEEecCCee
Confidence 777788899999999999999643221 2222211111222222222222 2 5577887777888888899
Q ss_pred eEEEEECCCcceeEEEccCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCc
Q 001295 589 SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI 667 (1106)
Q Consensus 589 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (1106)
.|+|||+.....+..+..... ..++++.-+- .|+.+++|..||.|++||.+.....
T Consensus 1188 ~IRIWDa~~E~~~~diP~~s~-t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d---------------------- 1244 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQVVADIPYGSS-TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD---------------------- 1244 (1387)
T ss_pred EEEEEecccceeEeecccCCC-ccceeecccccCCceEEEeecCCceEEeecccCCcc----------------------
Confidence 999999998888877765433 3455555443 5799999999999999998754110
Q ss_pred CchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccc--
Q 001295 668 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK-- 745 (1106)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~-- 745 (1106)
..|.+|. .|+..
T Consensus 1245 ------------------------------------------------s~v~~~R------------------~h~~~~~ 1258 (1387)
T KOG1517|consen 1245 ------------------------------------------------SLVCVYR------------------EHNDVEP 1258 (1387)
T ss_pred ------------------------------------------------ccceeec------------------ccCCccc
Confidence 1122221 13333
Q ss_pred eEEEEEcCCCce-EEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCE
Q 001295 746 ISRLIFTNSGNA-ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 824 (1106)
Q Consensus 746 i~~~~~s~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ 824 (1106)
|..+.+-++|-. +++++.+|.|++||++..... ........ ...++..+++..+++...
T Consensus 1259 Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e-------------------~~~~iv~~-~~yGs~lTal~VH~hapi 1318 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE-------------------TFLTIVAH-WEYGSALTALTVHEHAPI 1318 (1387)
T ss_pred ceeEEeecCCCcceeeeccCCeEEEEecccCccc-------------------ccceeeec-cccCccceeeeeccCCCe
Confidence 788888776554 999999999999998753110 00110000 001335899999999999
Q ss_pred EEEEeCCeEEEEEcCCCceeeeecC-------CCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecce
Q 001295 825 VMSASGGKISLFNMMTFKTMATFMP-------PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 885 (1106)
Q Consensus 825 l~~~sdg~i~vwd~~~~~~~~~~~~-------~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~ 885 (1106)
+|+|+.+.|+||++... .+..++. ..+.+.|++|+| -.-++|+|+.|.+|.||.....+
T Consensus 1319 iAsGs~q~ikIy~~~G~-~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1319 IASGSAQLIKIYSLSGE-QLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred eeecCcceEEEEecChh-hhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCcC
Confidence 99999999999998753 3333322 245689999999 78899999999999999876543
No 193
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.72 E-value=1.2e-16 Score=151.32 Aligned_cols=304 Identities=11% Similarity=0.141 Sum_probs=198.2
Q ss_pred eeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEe-ccCCCeEEEeccccCCceEEEEEecCCeE
Q 001295 449 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKI 527 (1106)
Q Consensus 449 ~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i 527 (1106)
+.+.+++|.+.|+++.|-.+++ |.+|..-|.|++|++.+.+.+..++ .|...|+.+...+. ..+.+-+.|+.+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r---L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~---d~l~tqgRd~~L 79 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER---LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN---DSLDTQGRDPLL 79 (323)
T ss_pred CeeEeccccchheehhhccchh---hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC---cchhhcCCCceE
Confidence 3456889999999999988775 8999999999999999999888888 56778888875433 469999999999
Q ss_pred EEEeCCCCCceeEeeCCCCeeEEEEEec-----CCCeEEEeeeccceeEEEEcCCCCEEEEEECC-CeEEEEECCCccee
Q 001295 528 KAWLYDNLGSRVDYEAPGRWCTTMAYSA-----DGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD-FSIKFWDMDSVQLL 601 (1106)
Q Consensus 528 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~ 601 (1106)
.+|++.-...+.. +.-.+.++.|.+ .++. . ...++.-++. ..+.+-|......+
T Consensus 80 ~lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~---------~--------eqll~yp~rgsde~h~~D~g~~tqv 139 (323)
T KOG0322|consen 80 ILWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKN---------S--------EQLLEYPSRGSDETHKQDGGDTTQV 139 (323)
T ss_pred EEEEccCcceEEE---eeeeccccccccceeccCCCc---------c--------hhheecCCcccchhhhhccCcccee
Confidence 9999876333221 112233333322 2210 0 0011111100 00222222222222
Q ss_pred EEEcc--CCCCCCcCeEEEcc-CC--CEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhh
Q 001295 602 TSIDA--DGGLPASPRIRFNK-DG--CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAA 676 (1106)
Q Consensus 602 ~~~~~--~~~~~~v~~v~~s~-~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1106)
...+. ....+.+.+..+.. ++ -++++|..+|.+.+||+.++...+. +...
T Consensus 140 ~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~-~~~~------------------------ 194 (323)
T KOG0322|consen 140 QIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQ-LPQS------------------------ 194 (323)
T ss_pred EccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeec-cccc------------------------
Confidence 22211 11123344444322 22 3566788899999999988722221 1110
Q ss_pred hhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCc
Q 001295 677 AATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGN 756 (1106)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 756 (1106)
|. ...+...|..+|.++.|.+...
T Consensus 195 --------------------------------------------~k------------v~~~~ash~qpvlsldyas~~~ 218 (323)
T KOG0322|consen 195 --------------------------------------------SK------------VESPNASHKQPVLSLDYASSCD 218 (323)
T ss_pred --------------------------------------------cc------------cccchhhccCcceeeeechhhc
Confidence 00 0011133788899999988766
Q ss_pred eEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEE
Q 001295 757 AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISL 835 (1106)
Q Consensus 757 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~v 835 (1106)
.=++++.+..+..|.++....+.. -+.... + ..-.|..+.+-||++.+|+++ |+.|||
T Consensus 219 rGisgga~dkl~~~Sl~~s~gslq---------------~~~e~~--l----knpGv~gvrIRpD~KIlATAGWD~RiRV 277 (323)
T KOG0322|consen 219 RGISGGADDKLVMYSLNHSTGSLQ---------------IRKEIT--L----KNPGVSGVRIRPDGKILATAGWDHRIRV 277 (323)
T ss_pred CCcCCCccccceeeeeccccCccc---------------ccceEE--e----cCCCccceEEccCCcEEeecccCCcEEE
Confidence 667777777788887763211100 001111 1 234577888999999999999 999999
Q ss_pred EEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEe
Q 001295 836 FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 881 (1106)
Q Consensus 836 wd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~ 881 (1106)
|+.++...+..+..|...|.+++|+| +..++|.++.|++|.+|++
T Consensus 278 yswrtl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 278 YSWRTLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL 322 (323)
T ss_pred EEeccCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence 99999999999999999999999999 8889999999999999986
No 194
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.71 E-value=3.4e-16 Score=150.11 Aligned_cols=228 Identities=18% Similarity=0.263 Sum_probs=165.9
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc--CCCE
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGSL 426 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~ 426 (1106)
+-+.|.|+.|.|++.. +|+- .|..|.+|+++.+..+. .++. ...-.+|....++-+||| ||..
T Consensus 122 avg~i~cvew~Pns~k-lasm-~dn~i~l~~l~ess~~v-aev~------------ss~s~e~~~~ftsg~WspHHdgnq 186 (370)
T KOG1007|consen 122 AVGKINCVEWEPNSDK-LASM-DDNNIVLWSLDESSKIV-AEVL------------SSESAEMRHSFTSGAWSPHHDGNQ 186 (370)
T ss_pred HhCceeeEEEcCCCCe-eEEe-ccCceEEEEcccCcchh-eeec------------ccccccccceecccccCCCCccce
Confidence 5569999999999997 5443 38999999999877642 1111 001234667788889999 8999
Q ss_pred EEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC-CceeEEEeccCCCeE
Q 001295 427 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQYIFEGHEAPVY 505 (1106)
Q Consensus 427 las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~h~~~v~ 505 (1106)
+++. .|+++..||+++.++...+ -.+|...|..+.|+|+-+. +|+||++||.|+|||.+. ..+++++.+|...|+
T Consensus 187 v~tt-~d~tl~~~D~RT~~~~~sI--~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW 262 (370)
T KOG1007|consen 187 VATT-SDSTLQFWDLRTMKKNNSI--EDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVW 262 (370)
T ss_pred EEEe-CCCcEEEEEccchhhhcch--hhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCCCccccccCCCceEEE
Confidence 8877 4889999999987655432 3478899999999999887 899999999999999984 567899999999999
Q ss_pred EEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCC--C------CeeEEEEEecCCCeEEEeeeccceeEEEEcCC
Q 001295 506 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP--G------RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 577 (1106)
Q Consensus 506 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~------~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~ 577 (1106)
++.|++..+ +++++|+.|..|.+|....-.....+... . ........-+||.......+...+.+++|+.-
T Consensus 263 ~VRfn~~hd-qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsa 341 (370)
T KOG1007|consen 263 AVRFNPEHD-QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSA 341 (370)
T ss_pred EEEecCccc-eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccC
Confidence 999998776 89999999999999977543321111110 0 01111223344443333444557788888887
Q ss_pred CCEEEE-EECCCeEEEEECC
Q 001295 578 KNRFLA-AGDDFSIKFWDMD 596 (1106)
Q Consensus 578 ~~~l~~-~~~d~~i~iwd~~ 596 (1106)
..++++ -+.||.+.|=.+.
T Consensus 342 dPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 342 DPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred CCeeEEEeccCceEEeecCC
Confidence 777655 6889998876553
No 195
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.71 E-value=1.3e-15 Score=169.99 Aligned_cols=262 Identities=20% Similarity=0.262 Sum_probs=192.7
Q ss_pred eeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc
Q 001295 343 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 422 (1106)
Q Consensus 343 ~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 422 (1106)
....+.-...|.|++|+|....++|.|..+|.|.+||+..+...... ........|..+|+.+.|-.
T Consensus 235 Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s-------------~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 235 PELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPS-------------GLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCc-------------ccccccccCCcCeEEEEEec
Confidence 34556678999999999999989999999999999999877652110 01113578999999999987
Q ss_pred CC--CEEEEEeCCCeEEEEEccCCceeeeeeeec---------cccCCeeEEEEcCCCCceEEEEecCCCcEEEEe---C
Q 001295 423 DG--SLFGVAYSRHIVQIYSYHGGDEVRQHLEID---------AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD---A 488 (1106)
Q Consensus 423 dg--~~las~~~d~~v~iwd~~~~~~~~~~~~l~---------~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd---~ 488 (1106)
+- .-+++++.||.|..|+++.-........+. .-...+++++|.+.... .++.|+++|.|.-=+ .
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCcEEEEEeccCC
Confidence 54 449999999999999887433211110111 12346899999998877 799999999997733 2
Q ss_pred CCCc-----eeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCC-CCCceeEeeCCCCeeEEEEEecCCCeEEE
Q 001295 489 TNGA-----KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD-NLGSRVDYEAPGRWCTTMAYSADGTRTYQ 562 (1106)
Q Consensus 489 ~~~~-----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~~~~ 562 (1106)
..+. .+..+..|.++|.++.++|-.. ..+.+++ |.++++|... ...++..+..+...+.+++|||...
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrp---- 454 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRP---- 454 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCc----
Confidence 2222 2335667899999999887665 3455555 9999999887 5566666776777788888888664
Q ss_pred eeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcc--eeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEcc
Q 001295 563 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ--LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 640 (1106)
Q Consensus 563 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 640 (1106)
..|+++..||.|.+||+.... ++.+.... ....+.+.|+++|+.|++|...|.+.+|++.
T Consensus 455 ----------------avF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 455 ----------------AVFATVDGDGNLDIWDLLQDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred ----------------eEEEEEcCCCceehhhhhccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 247888899999999986544 33333333 3456778899999999999999999999986
Q ss_pred CC
Q 001295 641 DG 642 (1106)
Q Consensus 641 ~~ 642 (1106)
..
T Consensus 517 ~~ 518 (555)
T KOG1587|consen 517 ES 518 (555)
T ss_pred ch
Confidence 43
No 196
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.8e-16 Score=163.17 Aligned_cols=322 Identities=16% Similarity=0.210 Sum_probs=231.1
Q ss_pred eeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEE-eccCCCeEEEeccccCCceEEEEEecCCeEEEE
Q 001295 452 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 530 (1106)
Q Consensus 452 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 530 (1106)
.|.+|.+.|..|.|+..|. .+++|+.|..|.+||+.+++....+ .||...|....|.|..+...+++++.||.+++=
T Consensus 137 kL~~H~GcVntV~FN~~Gd--~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGD--VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred cccCCCCccceeeecccCc--eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 5889999999999999999 8999999999999999998887766 468888888888888887899999999999988
Q ss_pred eCCCCCcee---EeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccC
Q 001295 531 LYDNLGSRV---DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD 607 (1106)
Q Consensus 531 d~~~~~~~~---~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 607 (1106)
.+...+... .+..|.+.|..++.-|+.. .-|.++++|+.+.-+|++.+.....+...
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp--------------------~~f~S~geD~~v~~~Dlr~~~pa~~~~cr 274 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSP--------------------KPFLSCGEDAVVFHIDLRQDVPAEKFVCR 274 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCC--------------------CcccccccccceeeeeeccCCccceeeee
Confidence 766544332 3455666777777776654 24889999999999999887655444322
Q ss_pred CC-C---CCcCeEEEcc-CCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccc
Q 001295 608 GG-L---PASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAG 682 (1106)
Q Consensus 608 ~~-~---~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1106)
.. . -...+++..| +...+++|+.|..+++||.+.-... ...+ .+. .|.+..
T Consensus 275 ~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e--~~n~---~~~--------~f~p~h----------- 330 (559)
T KOG1334|consen 275 EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE--ENNG---VLD--------KFCPHH----------- 330 (559)
T ss_pred ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhc--cccc---hhh--------hcCCcc-----------
Confidence 21 1 1456788888 4558999999999999987543110 0000 000 111110
Q ss_pred cccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEee
Q 001295 683 LADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA 762 (1106)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 762 (1106)
++ ......|++++|+.++.-++++.
T Consensus 331 --------------------------l~-----------------------------~d~~v~ITgl~Ysh~~sElLaSY 355 (559)
T KOG1334|consen 331 --------------------------LV-----------------------------EDDPVNITGLVYSHDGSELLASY 355 (559)
T ss_pred --------------------------cc-----------------------------ccCcccceeEEecCCccceeeee
Confidence 00 01345789999999998899999
Q ss_pred cCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEE-ecCCCEEEEEeC-CeEEEEEcCC
Q 001295 763 SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL-SKNDSYVMSASG-GKISLFNMMT 840 (1106)
Q Consensus 763 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~-s~~~~~l~~~sd-g~i~vwd~~~ 840 (1106)
.|-.|+++.-..+.. .......++ .......++|......|..+-| -|...|+++|+| |.|.||+-.+
T Consensus 356 nDe~IYLF~~~~~~G----~~p~~~s~~------~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t 425 (559)
T KOG1334|consen 356 NDEDIYLFNKSMGDG----SEPDPSSPR------EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT 425 (559)
T ss_pred cccceEEeccccccC----CCCCCCcch------hhccchhhcccccccccceeeeccCccceEEecCccceEEEEecch
Confidence 999999985432211 000000000 0112222444223445777765 578899999997 9999999999
Q ss_pred CceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecce
Q 001295 841 FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 885 (1106)
Q Consensus 841 ~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~ 885 (1106)
++.++-+.+...-|+|+.-+| ---+||+.+-|..|+||...+.+
T Consensus 426 ~eii~~MegDr~VVNCLEpHP-~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 426 GEIIRFMEGDRHVVNCLEPHP-HLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred hHHHHHhhcccceEeccCCCC-CCchhhccCCccceeeecCCccc
Confidence 999999998888899999888 56799999999999999875443
No 197
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=2e-15 Score=141.31 Aligned_cols=254 Identities=15% Similarity=0.194 Sum_probs=172.4
Q ss_pred CCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEE
Q 001295 351 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 430 (1106)
Q Consensus 351 ~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 430 (1106)
..|.+-++||.+++ +++|..+|+|.|..+.+--.-.. .+..........+|.++|+.++|. ..+|++|
T Consensus 11 ~tvf~qa~sp~~~~-l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~ 78 (325)
T KOG0649|consen 11 NTVFAQAISPSKQY-LFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSG 78 (325)
T ss_pred HHHHHHhhCCcceE-EEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeec
Confidence 45667789999996 88999999999998864211100 001111111358999999999998 5567777
Q ss_pred eCCCeEEEEEccCCce---eeeeee--ecccc-----CCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEecc
Q 001295 431 YSRHIVQIYSYHGGDE---VRQHLE--IDAHV-----GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 500 (1106)
Q Consensus 431 ~~d~~v~iwd~~~~~~---~~~~~~--l~~h~-----~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 500 (1106)
+ ||.|+=|..+.... .+.... ..-|. -.|+++-..|... -++.++.|+.++-||+++|+..++++||
T Consensus 79 g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGH 155 (325)
T KOG0649|consen 79 G-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGH 155 (325)
T ss_pred c-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCC
Confidence 6 59999998764322 111100 11122 3588999998877 4566668999999999999999999999
Q ss_pred CCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCE
Q 001295 501 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 580 (1106)
Q Consensus 501 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~ 580 (1106)
++.|.++.-.. ....+++|+.||++|+||.++.+....+..-.++- ..-|+- ..-| .+..-+..+
T Consensus 156 tDYvH~vv~R~--~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~---~lRp~~--------g~wi--gala~~edW 220 (325)
T KOG0649|consen 156 TDYVHSVVGRN--ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPN---LLRPDW--------GKWI--GALAVNEDW 220 (325)
T ss_pred cceeeeeeecc--cCcceeecCCCccEEEEeccccceeEEeccccChh---hcCccc--------Ccee--EEEeccCce
Confidence 99999998522 22479999999999999999988776544322110 000110 0011 222333446
Q ss_pred EEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEcc
Q 001295 581 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 640 (1106)
Q Consensus 581 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 640 (1106)
+++|+. ..+.+|++++.++...+....+ +..+.|.. ..+++++..+.+.-|.+.
T Consensus 221 lvCGgG-p~lslwhLrsse~t~vfpipa~---v~~v~F~~--d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 221 LVCGGG-PKLSLWHLRSSESTCVFPIPAR---VHLVDFVD--DCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred EEecCC-CceeEEeccCCCceEEEecccc---eeEeeeec--ceEEEeccccceeeeeec
Confidence 777654 5799999999999888876654 66778854 567777777788888664
No 198
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=2.5e-16 Score=165.49 Aligned_cols=277 Identities=18% Similarity=0.275 Sum_probs=181.9
Q ss_pred eeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC--------CceeEEEeccCCCeEEEeccccCCceEEEEEec
Q 001295 452 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN--------GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL 523 (1106)
Q Consensus 452 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~--------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 523 (1106)
++..|...|..++|.+-.. .|++++.|++|++|+++. -+++.+|.+|.++|.|+++. .++..+++|+.
T Consensus 289 tl~s~~d~ir~l~~~~sep--~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~--~n~~~~ysgg~ 364 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEP--VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVP--SNGEHCYSGGI 364 (577)
T ss_pred eeecchhhhhhhhcCCCCC--eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEec--CCceEEEeecc
Confidence 4667999999999999888 899999999999999932 35678999999999999974 55689999999
Q ss_pred CCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEE
Q 001295 524 DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTS 603 (1106)
Q Consensus 524 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 603 (1106)
||+|++|++........ .+... .....+.||.+ .++.+++++...+|++++.||+++.|+.....+ .+
T Consensus 365 Dg~I~~w~~p~n~dp~d--s~dp~--------vl~~~l~Ghtd-avw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~ 432 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQDPDD--SYDPS--------VLSGTLLGHTD-AVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CT 432 (577)
T ss_pred CceeeeeccCCCCCccc--ccCcc--------hhccceecccc-ceeeeeecccccceeeecCCceEEeeccCCcCc-cc
Confidence 99999997763221110 00000 00122333333 566666777777899999999999999876655 33
Q ss_pred EccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccc
Q 001295 604 IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGL 683 (1106)
Q Consensus 604 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1106)
+........-.++.+-... ++....+.....+++.+. ..
T Consensus 433 f~~~~e~g~Plsvd~~ss~--~a~~~~s~~~~~~~~~~~-ev-------------------------------------- 471 (577)
T KOG0642|consen 433 FGEPKEHGYPLSVDRTSSR--PAHSLASFRFGYTSIDDM-EV-------------------------------------- 471 (577)
T ss_pred cCCccccCCcceEeeccch--hHhhhhhcccccccchhh-hh--------------------------------------
Confidence 3322221222333332211 111111111111111110 00
Q ss_pred ccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeec
Q 001295 684 ADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS 763 (1106)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 763 (1106)
+..+.+.+.+ .
T Consensus 472 --------------------------------------------------------------~s~~~~~~s~-------~ 482 (577)
T KOG0642|consen 472 --------------------------------------------------------------VSDLLIFESS-------A 482 (577)
T ss_pred --------------------------------------------------------------hhheeecccc-------C
Confidence 0000000000 0
Q ss_pred CceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCc
Q 001295 764 NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK 842 (1106)
Q Consensus 764 dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~ 842 (1106)
.... .....+.-+...|.+.+.+++. |+.|+++|..++.
T Consensus 483 ~~~~----------------------------------------~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~ 522 (577)
T KOG0642|consen 483 SPGP----------------------------------------RRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK 522 (577)
T ss_pred CCcc----------------------------------------cccCccceEEecCCCCeeEecccCCceecccccccc
Confidence 0000 0123345566677777777777 8999999999999
Q ss_pred eeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCccc
Q 001295 843 TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 895 (1106)
Q Consensus 843 ~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~ 895 (1106)
.+.....|...++++++.| +|-+|++|+.||.|++|.+....++.....|..
T Consensus 523 ~l~s~~a~~~svtslai~~-ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 523 ILHSMVAHKDSVTSLAIDP-NGPYLMSGSHDGSVRLWKLDVKTCVLESTAHRK 574 (577)
T ss_pred cchheeeccceecceeecC-CCceEEeecCCceeehhhccchheeeccccccc
Confidence 9999999999999999999 999999999999999999988877777666643
No 199
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=2.3e-14 Score=143.08 Aligned_cols=261 Identities=14% Similarity=0.183 Sum_probs=171.3
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCC---CCCeeEEEEecCCCceEEEe--eCCCcEEEEEeec
Q 001295 809 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP---PPAATFLAFHPQDNNIIAIG--MDDSSIQIYNVRV 883 (1106)
Q Consensus 809 ~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~---~~~v~~l~~s~~d~~~la~g--~~dg~v~iwd~~~ 883 (1106)
....|.++.+ +.+.|++.-.+.|+|||+++.+.++++..- ...+.++.++. ++.+||.= ...|.|.|||+.+
T Consensus 86 fpt~IL~Vrm--Nr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t~GdV~l~d~~n 162 (391)
T KOG2110|consen 86 FPTSILAVRM--NRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTTSGDVVLFDTIN 162 (391)
T ss_pred cCCceEEEEE--ccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCC-CCceEEecCCCCCceEEEEEccc
Confidence 4566777777 456788887777999999999999887643 33455666665 56688763 3468999999999
Q ss_pred ceEEEEecCcccCeeEEEEecCCCEEEEEcCCCc-EEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-
Q 001295 884 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ-LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV- 961 (1106)
Q Consensus 884 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~- 961 (1106)
.+.+..+..|.+.+.+|+|+++|.+||++|+-|+ |||+.+.+++. ..++..|... ..|.+++|+||+.+|++
T Consensus 163 l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k----l~eFRRG~~~--~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 163 LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK----LYEFRRGTYP--VSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccE----eeeeeCCcee--eEEEEEEECCCCCeEEEe
Confidence 9999999999999999999999999999999998 68999998764 4455555543 57899999999999999
Q ss_pred EeCCeEEEEecCCceEeeecccCCCCCCeeEEE-ECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCc
Q 001295 962 VHETQLAIFETTKLECVKQWVPRESSAPITHAT-FSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNV 1040 (1106)
Q Consensus 962 ~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~-~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v 1040 (1106)
+..++|.+|.+++...-.. ..+-..-. +.+-.+.+.+=--.+.-.+||... ...... ++.. ...
T Consensus 237 S~TeTVHiFKL~~~~~~~~------~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R--~FAt~~----l~~s---~~~ 301 (391)
T KOG2110|consen 237 SNTETVHIFKLEKVSNNPP------ESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSR--KFATAK----LPES---GRK 301 (391)
T ss_pred cCCCeEEEEEecccccCCC------CCCCCCCcccchhhhhhhhhcchhhhhhhhhcc--ceeEEE----ccCC---Ccc
Confidence 5778999999876541111 10000000 000000011000011223355433 233222 2211 101
Q ss_pred cceEEEEeC-CCCCEEEEEeCCCcEEEEeecC--CCCccCCCCCCCCCCCCCCCCCCC
Q 001295 1041 HPLVIAAHP-QEPNEFALGLSDGGVHVFEPLE--SEGKWGVPPPVDNGSTSSMPATPP 1095 (1106)
Q Consensus 1041 ~~~~~~~~~-~d~~~l~t~~~Dg~v~vW~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 1095 (1106)
. .+++.+ ....++..++.||.++.+.++- |...+-+.+-+-.|+.....+++.
T Consensus 302 ~--~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik~h~~~~~~~t~~a~~~ 357 (391)
T KOG2110|consen 302 N--ICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIKRHFLDGSIDTSAASGK 357 (391)
T ss_pred c--eEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEEeeccCCcccccccccc
Confidence 1 233332 2467888899999999999875 445555555666666665544444
No 200
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=4.4e-16 Score=160.28 Aligned_cols=273 Identities=12% Similarity=0.158 Sum_probs=202.7
Q ss_pred cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc--CCC
Q 001295 348 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGS 425 (1106)
Q Consensus 348 ~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~ 425 (1106)
.|.+-|+.|-|...|. +|++|+.|..|.+||+..++.... ...||...|....|-| +.+
T Consensus 140 ~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP~s~d~ 200 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIPFSGDR 200 (559)
T ss_pred CCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhccCCCCCc
Confidence 3999999999999999 699999999999999998877654 3589999999999998 667
Q ss_pred EEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEe---ccCC
Q 001295 426 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE---GHEA 502 (1106)
Q Consensus 426 ~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~h~~ 502 (1106)
.+++++.||.|++=.+.....+.....+..|.++|.-++.-|+..+ -|.|++.|+.+.-.|++.+.+...+. .+..
T Consensus 201 ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~ 279 (559)
T KOG1334|consen 201 TIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK 279 (559)
T ss_pred CceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeeeccCCc
Confidence 8999999999999887654444444567789999999999999887 79999999999999998876544332 2333
Q ss_pred ---CeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCC
Q 001295 503 ---PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 579 (1106)
Q Consensus 503 ---~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~ 579 (1106)
....++..|... ..+++|+.|..+++||.+....... .+.+. .|.|.. +.....-.|+++.|+.++.
T Consensus 280 ~~v~L~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~----n~~~~--~f~p~h---l~~d~~v~ITgl~Ysh~~s 349 (559)
T KOG1334|consen 280 ERVGLYTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEEN----NGVLD--KFCPHH---LVEDDPVNITGLVYSHDGS 349 (559)
T ss_pred cceeeeeEecCCCCc-cccccCChhhhhhhhcccchhhccc----cchhh--hcCCcc---ccccCcccceeEEecCCcc
Confidence 456777766543 5899999999999999875332210 00000 111110 0112223566777776666
Q ss_pred EEEEEECCCeEEEEECCC--c----------ceeEE-EccCCCCCCcCeEEE-ccCCCEEEEEeCCCcEEEEEccCCchh
Q 001295 580 RFLAAGDDFSIKFWDMDS--V----------QLLTS-IDADGGLPASPRIRF-NKDGCLLAVSTNDNGIKILATSDGIRL 645 (1106)
Q Consensus 580 ~l~~~~~d~~i~iwd~~~--~----------~~~~~-~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~ 645 (1106)
-+++...|-.|++++-.. | ..+.. +++|.....|..+-| -|...|+++|++-|.|.||+-.++ +.
T Consensus 350 ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~-ei 428 (559)
T KOG1334|consen 350 ELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG-EI 428 (559)
T ss_pred ceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh-HH
Confidence 788888888999996432 2 22233 677776667877775 578899999999999999998888 66
Q ss_pred hhhhcc
Q 001295 646 LRTFEN 651 (1106)
Q Consensus 646 ~~~~~~ 651 (1106)
++.+++
T Consensus 429 i~~Meg 434 (559)
T KOG1334|consen 429 IRFMEG 434 (559)
T ss_pred HHHhhc
Confidence 666654
No 201
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=5.6e-15 Score=165.58 Aligned_cols=195 Identities=18% Similarity=0.211 Sum_probs=145.3
Q ss_pred CCEEEEEeCCeEEEEEcCCCceeeeecC-CCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecc---eEEEEecCcccC-
Q 001295 822 DSYVMSASGGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKSKLKGHSKR- 896 (1106)
Q Consensus 822 ~~~l~~~sdg~i~vwd~~~~~~~~~~~~-~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~---~~~~~l~~h~~~- 896 (1106)
|.++++|.-..|+|||+....+...+.. ....|+++.-+...|.++|.|..||.|++||.+.. ..+...+.|++.
T Consensus 1178 G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~ 1257 (1387)
T KOG1517|consen 1178 GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVE 1257 (1387)
T ss_pred CeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcc
Confidence 3344444457899999998777776653 34457777766656899999999999999998763 356778889988
Q ss_pred -eeEEEEecCCCE-EEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCC
Q 001295 897 -ITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK 974 (1106)
Q Consensus 897 -V~~l~~s~d~~~-l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~ 974 (1106)
|..+.+-+.|-- |+||+.||.|++||++...... .+.+.. +....+..+++..+++...+|+|+.+.|.||++..
T Consensus 1258 ~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~--~~~iv~-~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1258 PIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET--FLTIVA-HWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSG 1334 (1387)
T ss_pred cceeEEeecCCCcceeeeccCCeEEEEecccCcccc--cceeee-ccccCccceeeeeccCCCeeeecCcceEEEEecCh
Confidence 999999887654 9999999999999998842221 222221 11001247999999999999998779999999874
Q ss_pred ceEeeecccC-----CCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCce
Q 001295 975 LECVKQWVPR-----ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1020 (1106)
Q Consensus 975 ~~~~~~~~~~-----~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~ 1020 (1106)
+.+..+... .....+.|++|.|-.-+||+|+.|.+|.||......
T Consensus 1335 -~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1335 -EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred -hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 433333321 125678999999999999999999999999877653
No 202
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.68 E-value=8.7e-15 Score=163.34 Aligned_cols=285 Identities=15% Similarity=0.167 Sum_probs=195.9
Q ss_pred CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCce--eE----EEeccCCCeEEE
Q 001295 434 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK--QY----IFEGHEAPVYSV 507 (1106)
Q Consensus 434 ~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~--~~----~~~~h~~~v~~~ 507 (1106)
+.+.||++....... ..+. -...|.++.|+|.... +++.|..+|+|.+||++.+.. .. ....|..+++.+
T Consensus 222 ~~~~vW~~~~p~~Pe--~~~~-~~s~v~~~~f~p~~p~-ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v 297 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPE--LVLE-SPSEVTCLKFCPFDPN-LLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV 297 (555)
T ss_pred ceEEEEecCCCCCce--EEEe-cCCceeEEEeccCCcc-eEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence 479999998763222 2232 4578999999999887 799999999999999987665 22 223588899999
Q ss_pred eccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECC
Q 001295 508 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 587 (1106)
Q Consensus 508 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 587 (1106)
.|..+....-|++++.||.|..|+++......... ....
T Consensus 298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~---------------------------------------~~~~-- 336 (555)
T KOG1587|consen 298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGL---------------------------------------LLES-- 336 (555)
T ss_pred EEeccCCCCceEEEecCCcEeeeeccccccchhhc---------------------------------------cccc--
Confidence 98776655668888889999999766432211100 0000
Q ss_pred CeEEEEECCCcceeEEEccCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCC
Q 001295 588 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 666 (1106)
Q Consensus 588 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (1106)
. ...+. .. .....++++.|.+ +-..+++|+.+|.|.--+.... ...
T Consensus 337 -~-----~~~~~---~~---~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~-~~~-------------------- 383 (555)
T KOG1587|consen 337 -K-----KHKGQ---QS---SKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY-TPA-------------------- 383 (555)
T ss_pred -c-----ccccc---cc---ccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC-ccc--------------------
Confidence 0 00000 00 1123467888888 6678899999998865322111 000
Q ss_pred cCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccce
Q 001295 667 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 746 (1106)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i 746 (1106)
.
T Consensus 384 -------------------------------------------------------------------------------~ 384 (555)
T KOG1587|consen 384 -------------------------------------------------------------------------------P 384 (555)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred EEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCE-E
Q 001295 747 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY-V 825 (1106)
Q Consensus 747 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~-l 825 (1106)
. +.|.+... . ..|.+.|+++.++|-+.. +
T Consensus 385 ~-~~~~~~~~-----------------------------------------------~--~~h~g~v~~v~~nPF~~k~f 414 (555)
T KOG1587|consen 385 E-VSYKGHST-----------------------------------------------F--ITHIGPVYAVSRNPFYPKNF 414 (555)
T ss_pred c-cccccccc-----------------------------------------------c--cccCcceEeeecCCCcccee
Confidence 0 00000000 0 117788888888887654 4
Q ss_pred EEEeCCeEEEEEcC-CCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec--ceEEEEecCcccCeeEEEE
Q 001295 826 MSASGGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV--DEVKSKLKGHSKRITGLAF 902 (1106)
Q Consensus 826 ~~~sdg~i~vwd~~-~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~--~~~~~~l~~h~~~V~~l~~ 902 (1106)
.+++|.+++||... ....+..+..+...+++++|||....++|++..||.|.|||+.. ...+.+..-+....+.+.|
T Consensus 415 ls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~ 494 (555)
T KOG1587|consen 415 LSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRW 494 (555)
T ss_pred eeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeec
Confidence 45559999999987 66667777777888999999997778999999999999999965 3444555555667788889
Q ss_pred ecCCCEEEEEcCCCcEEEEeCCC
Q 001295 903 SHALNVLVSSGADSQLCVWSSDG 925 (1106)
Q Consensus 903 s~d~~~l~s~s~Dg~i~vwd~~~ 925 (1106)
+++|+.|+.|+..|++.+|++..
T Consensus 495 s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 495 SPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CCCCcEEEEecCCCcEEEEEcCc
Confidence 99999999999999999999964
No 203
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.67 E-value=4.8e-13 Score=151.48 Aligned_cols=152 Identities=16% Similarity=0.292 Sum_probs=124.9
Q ss_pred EEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCCC
Q 001295 355 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 434 (1106)
Q Consensus 355 ~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 434 (1106)
-+.++++.-| +++|+.-+.|.+|+....+.-. .+.||++.|.++.||-||++++++|.|.
T Consensus 138 ~~g~s~~~~~-i~~gsv~~~iivW~~~~dn~p~-------------------~l~GHeG~iF~i~~s~dg~~i~s~SdDR 197 (967)
T KOG0974|consen 138 IIGDSAEELY-IASGSVFGEIIVWKPHEDNKPI-------------------RLKGHEGSIFSIVTSLDGRYIASVSDDR 197 (967)
T ss_pred EEeccCcEEE-EEeccccccEEEEeccccCCcc-------------------eecccCCceEEEEEccCCcEEEEEecCc
Confidence 3445666665 8999999999999987221111 2789999999999999999999999999
Q ss_pred eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccC-CCeEEEeccccC
Q 001295 435 IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE-APVYSVCPHHKE 513 (1106)
Q Consensus 435 ~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~ 513 (1106)
++++|++++.+... .+.-+|+.+|+.+.|.|+ .++|++.|.+.++|+ ..+..+..+.+|. ..++.++....
T Consensus 198 siRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n----~i~t~gedctcrvW~-~~~~~l~~y~~h~g~~iw~~~~~~~- 269 (967)
T KOG0974|consen 198 SIRLWPIDSREVLG--CTGFGHSARVWACCFLPN----RIITVGEDCTCRVWG-VNGTQLEVYDEHSGKGIWKIAVPIG- 269 (967)
T ss_pred ceeeeecccccccC--cccccccceeEEEEeccc----eeEEeccceEEEEEe-cccceehhhhhhhhcceeEEEEcCC-
Confidence 99999999988665 246689999999999988 499999999999997 4566666888886 45888886443
Q ss_pred CceEEEEEecCCeEEEEeCCCC
Q 001295 514 NIQFIFSTALDGKIKAWLYDNL 535 (1106)
Q Consensus 514 ~~~~l~s~~~dg~i~iwd~~~~ 535 (1106)
...++|++.|+.+++||+...
T Consensus 270 -~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 270 -VIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred -ceEEEeeccCcchhhhhhhcc
Confidence 378999999999999998754
No 204
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.1e-15 Score=155.59 Aligned_cols=198 Identities=16% Similarity=0.174 Sum_probs=161.0
Q ss_pred eEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecC
Q 001295 814 PCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG 892 (1106)
Q Consensus 814 ~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~ 892 (1106)
.+++|+.+|..|++++ ||++|||+..+...+.....|..+|.++.||| |+++|++-+.| ..+||++.+|..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999998 99999999988888888888999999999999 99999999999 999999999977766653
Q ss_pred --cccCeeEEEEecCC-----CEEEEEcCCCcEEEEeCCCcccccc-eeecccCCCCCCCCCCceEEEcCCCcEEEEE-e
Q 001295 893 --HSKRITGLAFSHAL-----NVLVSSGADSQLCVWSSDGWEKQKN-RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H 963 (1106)
Q Consensus 893 --h~~~V~~l~~s~d~-----~~l~s~s~Dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~ 963 (1106)
-......+.|+.|+ ...++...-+.|+.|++..+..... +..+....+ ..|.+++.|+||+++|.+ .
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~----~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF----KSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc----CcceeEEEcCCCcEEEEecc
Confidence 22335567888877 3444555567788888776554210 011111111 378999999999999994 8
Q ss_pred CCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001295 964 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus 964 d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
||.|.|++..+.+++.... +.|..-|+.+.|+||.+++++.+.|.++.|..+.-
T Consensus 302 dGsVai~~~~~lq~~~~vk-~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVK-EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCcEEEEEeceeeeeEeeh-hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999999999887765 58999999999999999999999999999988754
No 205
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.66 E-value=1.2e-14 Score=139.95 Aligned_cols=245 Identities=15% Similarity=0.228 Sum_probs=177.4
Q ss_pred CCCCeeEEEEecCCC----EEEEEeCCeEEEEEcCCC--cee--eee-----cCCCCCeeEEEEecCCCceEEEeeCCCc
Q 001295 809 PEEAVPCFALSKNDS----YVMSASGGKISLFNMMTF--KTM--ATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSS 875 (1106)
Q Consensus 809 ~~~~v~~l~~s~~~~----~l~~~sdg~i~vwd~~~~--~~~--~~~-----~~~~~~v~~l~~s~~d~~~la~g~~dg~ 875 (1106)
|..+++.+.|.|+.+ -+++.++..+|+|.+... +.. ..+ ..+..++++..|...+.++|.+.+-|-+
T Consensus 95 ~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTT 174 (364)
T KOG0290|consen 95 HPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTT 174 (364)
T ss_pred CCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCe
Confidence 889999999999874 233444678999998732 211 111 2345689999999888999999999999
Q ss_pred EEEEEeecc---eEEEEecCcccCeeEEEEecCC-CEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEE
Q 001295 876 IQIYNVRVD---EVKSKLKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 951 (1106)
Q Consensus 876 v~iwd~~~~---~~~~~l~~h~~~V~~l~~s~d~-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 951 (1106)
..|||+.++ .+...|-+|..+|..++|..++ ..+||+|.||.||++|++..+.. .++-.... .......++
T Consensus 175 CTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS--TIIYE~p~---~~~pLlRLs 249 (364)
T KOG0290|consen 175 CTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS--TIIYEDPS---PSTPLLRLS 249 (364)
T ss_pred EEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc--eEEecCCC---CCCcceeec
Confidence 999999986 3567888999999999999865 57899999999999999984432 22211111 124667888
Q ss_pred EcC-CCcEEEE-E-eCCeEEEEecCCce-EeeecccCCCCCCeeEEEECCCC-CEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295 952 FHQ-DQIHFLV-V-HETQLAIFETTKLE-CVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus 952 ~s~-dg~~l~~-~-~d~~v~i~d~~~~~-~~~~~~~~~h~~~v~~l~~s~d~-~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
|++ |-+++|+ + ....|.|.|++.-. .+..+ .+|.+.|..|+|.|.. ..|.++++|..+-+||+.+.-......
T Consensus 250 wnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L--~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~d 327 (364)
T KOG0290|consen 250 WNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL--RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGED 327 (364)
T ss_pred cCcCCchHHhhhhcCCceEEEEEecCCCcceehh--hcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCC
Confidence 887 4577777 4 45679999997532 33344 4999999999999955 469999999999999998654311111
Q ss_pred C-CcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEE
Q 001295 1027 P-SAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1067 (1106)
Q Consensus 1027 ~-~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW 1067 (1106)
+ ..|. ..++|. .+.|++..++.++.+. ++++.+-
T Consensus 328 Pilay~----a~~EVN--qi~Ws~~~~Dwiai~~-~kkleiL 362 (364)
T KOG0290|consen 328 PILAYT----AGGEVN--QIQWSSSQPDWIAICF-GKKLEIL 362 (364)
T ss_pred chhhhh----ccceee--eeeecccCCCEEEEEe-cCeeeEE
Confidence 1 1122 134466 7999988888888876 4444443
No 206
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.65 E-value=4.5e-15 Score=145.07 Aligned_cols=209 Identities=15% Similarity=0.185 Sum_probs=162.3
Q ss_pred CcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC-
Q 001295 412 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN- 490 (1106)
Q Consensus 412 ~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~- 490 (1106)
..+|+|.+|++|+..+|.+-.+..|.||.....+......++..|...|+.|+|+|... .|++|+.|..-+||...+
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCCC
Confidence 45899999999999999999999999999998887777789999999999999999998 699999999999999843
Q ss_pred C--ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccc
Q 001295 491 G--AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 568 (1106)
Q Consensus 491 ~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~ 568 (1106)
+ ++.-.+..+....+++.|+|.+ +.|++|+.-..|.+|-++....=..-+....++ ...
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPi-----------------rSt 148 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPI-----------------RST 148 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCcc-----------------ccc
Confidence 3 3344566688999999998776 589999999999998665422111000001111 125
Q ss_pred eeEEEEcCCCCEEEEEECCCeEEEEECC-----C-------------cceeEEEccCCCCCCcCeEEEccCCCEEEEEeC
Q 001295 569 LGVVQFDTTKNRFLAAGDDFSIKFWDMD-----S-------------VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN 630 (1106)
Q Consensus 569 i~~~~~~~~~~~l~~~~~d~~i~iwd~~-----~-------------~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 630 (1106)
+.+++|+|++-.+++|+.|+..|++..- . |+++..+. ...+.+..+.|+|+|..|+-.+.
T Consensus 149 v~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~H 226 (361)
T KOG1523|consen 149 VTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGH 226 (361)
T ss_pred eeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecC
Confidence 6667777777789999999999998641 1 22333332 22357899999999999999999
Q ss_pred CCcEEEEEccCCc
Q 001295 631 DNGIKILATSDGI 643 (1106)
Q Consensus 631 dg~i~iwd~~~~~ 643 (1106)
|+++.+-|...+.
T Consensus 227 ds~v~~~da~~p~ 239 (361)
T KOG1523|consen 227 DSTVSFVDAAGPS 239 (361)
T ss_pred CCceEEeecCCCc
Confidence 9999999987664
No 207
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.65 E-value=1.4e-14 Score=139.30 Aligned_cols=252 Identities=16% Similarity=0.260 Sum_probs=184.8
Q ss_pred ccCCCCcEEEEEecCCC----eEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc
Q 001295 347 LNQGSSPMSMDFHPVQQ----TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 422 (1106)
Q Consensus 347 ~~h~~~v~~~~~sp~g~----~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 422 (1106)
+.|.-+++.+.|.|+.. .||||.+ -.+++|.+...+..... ...+....-..+..++++..|+.
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~----------~~~L~~~kns~~~aPlTSFDWne 160 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVEL----------QSVLNNNKNSEFCAPLTSFDWNE 160 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceeh----------hhhhccCcccccCCccccccccc
Confidence 67999999999999873 3687654 58999998743221110 11111222356778999999998
Q ss_pred -CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEE---e
Q 001295 423 -DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---E 498 (1106)
Q Consensus 423 -dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~ 498 (1106)
|-+++.+++-|-+-.|||++++..-.....|-+|...|..|+|...+.. +|++.|.||+||++|++.-+.-..+ .
T Consensus 161 ~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR~leHSTIIYE~p 239 (364)
T KOG0290|consen 161 VDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLRSLEHSTIIYEDP 239 (364)
T ss_pred CCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEecccccceEEecCC
Confidence 8899999999999999999997432222347789999999999998877 8999999999999999876543333 2
Q ss_pred ccCCCeEEEeccccCCceEEEEEecC-CeEEEEeCCCCC-ceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcC
Q 001295 499 GHEAPVYSVCPHHKENIQFIFSTALD-GKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 576 (1106)
Q Consensus 499 ~h~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~ 576 (1106)
....+...++|+.. |-+++++-..| ..|.+-|++... .+..+..|...|..++|.|...
T Consensus 240 ~~~~pLlRLswnkq-DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~------------------ 300 (364)
T KOG0290|consen 240 SPSTPLLRLSWNKQ-DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSS------------------ 300 (364)
T ss_pred CCCCcceeeccCcC-CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCC------------------
Confidence 22456778888654 44678877665 568999998754 4557889999999999988775
Q ss_pred CCCEEEEEECCCeEEEEECCCcc------eeEEEccCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEE
Q 001295 577 TKNRFLAAGDDFSIKFWDMDSVQ------LLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKI 636 (1106)
Q Consensus 577 ~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~i 636 (1106)
..+++++.|..+.+||+...- ++..+. ....|+.+.|++ .+..++++.. +.+.+
T Consensus 301 --~hictaGDD~qaliWDl~q~~~~~~~dPilay~---a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 301 --SHICTAGDDCQALIWDLQQMPRENGEDPILAYT---AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred --ceeeecCCcceEEEEecccccccCCCCchhhhh---ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 468999999999999997532 122222 234689999997 6778877765 34433
No 208
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.65 E-value=5.7e-14 Score=160.45 Aligned_cols=213 Identities=11% Similarity=0.113 Sum_probs=151.3
Q ss_pred cCCCCcCeEEEEEccC-CCEEEEEeCCCeEEEEEccCC----ceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCc
Q 001295 408 VKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGG----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT 482 (1106)
Q Consensus 408 ~~~h~~~V~~l~~spd-g~~las~~~d~~v~iwd~~~~----~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~ 482 (1106)
+..|...|..++.++. +.++++||.||+|++||...- ...+...++.-...++.++.+.+.+. .+|.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 7789999999999885 599999999999999998631 22333334544567899999999999 7888999999
Q ss_pred EEEEeCCC--Cc-----eeEEEecc-CCCeEEE-eccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEE
Q 001295 483 IKVWDATN--GA-----KQYIFEGH-EAPVYSV-CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAY 553 (1106)
Q Consensus 483 i~iwd~~~--~~-----~~~~~~~h-~~~v~~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 553 (1106)
|++.++.. .+ +.+....+ .+.+.++ ++........++.+..-+.|..||++.......++...
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~-------- 1193 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL-------- 1193 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc--------
Confidence 99999875 21 11222222 2334444 33322222378888899999999998765554333221
Q ss_pred ecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccC---CCEEEEEe-
Q 001295 554 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD---GCLLAVST- 629 (1106)
Q Consensus 554 s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~---~~~l~~~~- 629 (1106)
+.+.+++++.+|.++++++|...|.+.+||++-+.++.......+ .++..+..+|- ....++++
T Consensus 1194 -----------~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~-~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1194 -----------RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR-APIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred -----------cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc-CCcceEEeeccCCCCceEEEecc
Confidence 122455566666667999999999999999999999888865544 56777777762 24554444
Q ss_pred -CCCcEEEEEccCC
Q 001295 630 -NDNGIKILATSDG 642 (1106)
Q Consensus 630 -~dg~i~iwd~~~~ 642 (1106)
..+.|.+|++.+|
T Consensus 1262 ~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1262 SSNNEVSTWNMETG 1275 (1431)
T ss_pred cCCCceeeeecccC
Confidence 4788999999888
No 209
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=3.2e-15 Score=152.32 Aligned_cols=199 Identities=17% Similarity=0.171 Sum_probs=151.8
Q ss_pred eEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceee
Q 001295 855 TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFL 934 (1106)
Q Consensus 855 ~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~ 934 (1106)
.+++|+. ++..|++|+.||++|||+..+...+.....|...|.+|.|||||++|++.+.| ..+||++.++-..
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~----- 220 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAAL----- 220 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchh-----
Confidence 7899999 89999999999999999988888888888899999999999999999999999 8999999997322
Q ss_pred cccCCCCCCCCCCceEEEcCCC---cE-EEE--EeCCeEEEEecCCceE---eeecccCCCCCCeeEEEECCCCCEEEEE
Q 001295 935 QIPTGRTPTAQSDTRVQFHQDQ---IH-FLV--VHETQLAIFETTKLEC---VKQWVPRESSAPITHATFSCDSQLVYAC 1005 (1106)
Q Consensus 935 ~~~~~~~~~~~~i~~~~~s~dg---~~-l~~--~~d~~v~i~d~~~~~~---~~~~~~~~h~~~v~~l~~s~d~~~l~t~ 1005 (1106)
..... .........+.|+.|+ .+ +++ ..-+.|+.||+..... .+....-.-...|++++.|+||+++|.|
T Consensus 221 a~~t~-~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 221 ARKTP-FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred hhcCC-cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence 11111 1111356788999887 33 333 2445677776643322 1111111124589999999999999999
Q ss_pred EcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecC
Q 001295 1006 FLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus 1006 s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
+.||.|.|++..+.+.+.-++ ..|.. .|. .+.|+| |.+.+++.+.|....|..+.-
T Consensus 300 T~dGsVai~~~~~lq~~~~vk------~aH~~-~VT--~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQRLQYVK------EAHLG-FVT--GLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred ccCCcEEEEEeceeeeeEeeh------hhhee-eee--eEEEcC-CcCcccccccCCceeEEEEee
Confidence 999999999998887776544 33322 355 999999 789999999999999998875
No 210
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.63 E-value=1.2e-14 Score=150.98 Aligned_cols=207 Identities=16% Similarity=0.215 Sum_probs=160.7
Q ss_pred CCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCcccc
Q 001295 706 VKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATA 785 (1106)
Q Consensus 706 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 785 (1106)
.+.++.+++||.+.+.+-....+. ....|.+.|.+-.|+|||.-|++++.||.|++|.-.
T Consensus 75 ~d~~~i~s~DGkf~il~k~~rVE~--------sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs------------ 134 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSARVER--------SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS------------ 134 (737)
T ss_pred cceEEEEcCCceEEEecccchhhh--------hhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc------------
Confidence 467888899999887764431111 114588999999999999999999999999999743
Q ss_pred ccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCc
Q 001295 786 SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 865 (1106)
Q Consensus 786 ~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~ 865 (1106)
|.+.....+ ...+|.|++|.|+...++.+..+.+.|=.+.-...+-..+.|.+-|.++.|++ -+.
T Consensus 135 -----------GMLRStl~Q---~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~-~s~ 199 (737)
T KOG1524|consen 135 -----------GMLRSTVVQ---NEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWST-QSN 199 (737)
T ss_pred -----------chHHHHHhh---cCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCc-ccc
Confidence 322221111 57889999999999999998888888888887777778889999999999999 889
Q ss_pred eEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCC
Q 001295 866 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQ 945 (1106)
Q Consensus 866 ~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 945 (1106)
++++|++|-..+|||.. |..+..-..|.-+|++++|.|| +.++.++. .++++=.. ..+
T Consensus 200 lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~~~p-------------------~~G 257 (737)
T KOG1524|consen 200 IIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARFSSP-------------------RVG 257 (737)
T ss_pred ceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeee-eeeeecCC-------------------Ccc
Confidence 99999999999999965 6666667789999999999999 55554543 23442111 114
Q ss_pred CCceEEEcCCCcEEEEE-eCCeEEE
Q 001295 946 SDTRVQFHQDQIHFLVV-HETQLAI 969 (1106)
Q Consensus 946 ~i~~~~~s~dg~~l~~~-~d~~v~i 969 (1106)
.|..++||+||..++++ ..|.+.+
T Consensus 258 SifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 258 SIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ceEEEEEcCCCceeeccccCceEEE
Confidence 78999999999999984 6665543
No 211
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.63 E-value=9.3e-14 Score=158.73 Aligned_cols=269 Identities=14% Similarity=0.158 Sum_probs=179.4
Q ss_pred eeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc
Q 001295 343 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 422 (1106)
Q Consensus 343 ~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 422 (1106)
+.++..|...|..++.++...-+++||+.||+|+|||...-..-. ..+ ....++.-.+..+.++...+
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~-----------rS~ltys~~~sr~~~vt~~~ 1108 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSA-----------RSELTYSPEGSRVEKVTMCG 1108 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-cee-----------eeeEEEeccCCceEEEEecc
Confidence 334445999999999998774479999999999999986422110 000 01112333567899999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCC--ceee--e--eeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEE
Q 001295 423 DGSLFGVAYSRHIVQIYSYHGG--DEVR--Q--HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 496 (1106)
Q Consensus 423 dg~~las~~~d~~v~iwd~~~~--~~~~--~--~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 496 (1106)
.+..+|+++.||.|++.+++-. +... + ...+......|..-+|....+...++.+..-+.|..||+++.....+
T Consensus 1109 ~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1109 NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 9999999999999999998762 1111 1 11122222334555565554443677888889999999988776665
Q ss_pred Eec--cCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCC-CeeEEEEEecCCCeEEEeeeccceeEEE
Q 001295 497 FEG--HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG-RWCTTMAYSADGTRTYQGFRKRSLGVVQ 573 (1106)
Q Consensus 497 ~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 573 (1106)
++. ..+.|++++.++ .+.++++|...|.+.+||++=+..+..+..+. .++..+...+-.
T Consensus 1189 lk~~~~hG~vTSi~idp--~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~---------------- 1250 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDP--WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTY---------------- 1250 (1431)
T ss_pred hhcCccccceeEEEecC--CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccC----------------
Confidence 542 457899999755 44799999999999999999777666554432 244444443322
Q ss_pred EcCCCCEEEEE-E-CCCeEEEEECCCcceeEEEccCCC-----------------CCCcCeEEEccCCCEEEEEeCCCcE
Q 001295 574 FDTTKNRFLAA-G-DDFSIKFWDMDSVQLLTSIDADGG-----------------LPASPRIRFNKDGCLLAVSTNDNGI 634 (1106)
Q Consensus 574 ~~~~~~~l~~~-~-~d~~i~iwd~~~~~~~~~~~~~~~-----------------~~~v~~v~~s~~~~~l~~~~~dg~i 634 (1106)
+.....+++ . ..+.|.+|++.+|.....+..... .-......+...+..+.+|+.|..|
T Consensus 1251 --~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kI 1328 (1431)
T KOG1240|consen 1251 --PQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKI 1328 (1431)
T ss_pred --CCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccce
Confidence 122334443 3 578899999999877666643210 0111223344456788999999999
Q ss_pred EEEEccCCc
Q 001295 635 KILATSDGI 643 (1106)
Q Consensus 635 ~iwd~~~~~ 643 (1106)
+.||.....
T Consensus 1329 R~wD~~~p~ 1337 (1431)
T KOG1240|consen 1329 RKWDPTRPE 1337 (1431)
T ss_pred eeccCCCcc
Confidence 999987763
No 212
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.61 E-value=8.1e-13 Score=144.45 Aligned_cols=327 Identities=12% Similarity=0.154 Sum_probs=195.1
Q ss_pred EEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECC
Q 001295 517 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD 596 (1106)
Q Consensus 517 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 596 (1106)
++++-..++.|.+.|..+.+....+......-..+.+++||+ ++++++.||.|.++|+.
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr---------------------~~yv~~rdg~vsviD~~ 66 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGR---------------------YLYVANRDGTVSVIDLA 66 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SS---------------------EEEEEETTSEEEEEETT
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCC---------------------EEEEEcCCCeEEEEECC
Confidence 345666789999999998877777765544333445555555 78888899999999999
Q ss_pred CcceeEEEccCCCCCCcCeEEEccCCCEEEEEe-CCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHh
Q 001295 597 SVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAA 675 (1106)
Q Consensus 597 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1106)
+++.+..+..... ..++++++||++++++. .++.+.++|..+. +.++.+......
T Consensus 67 ~~~~v~~i~~G~~---~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~-------------------- 122 (369)
T PF02239_consen 67 TGKVVATIKVGGN---PRGIAVSPDGKYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMP-------------------- 122 (369)
T ss_dssp SSSEEEEEE-SSE---EEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE---------------------
T ss_pred cccEEEEEecCCC---cceEEEcCCCCEEEEEecCCCceeEeccccc-cceeeccccccc--------------------
Confidence 9999999875433 57899999999999775 5899999998776 444333211100
Q ss_pred hhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCC
Q 001295 676 AAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSG 755 (1106)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 755 (1106)
......++..+..++..
T Consensus 123 ---------------------------------------------------------------~~~~~~Rv~aIv~s~~~ 139 (369)
T PF02239_consen 123 ---------------------------------------------------------------VDGPESRVAAIVASPGR 139 (369)
T ss_dssp ---------------------------------------------------------------TTTS---EEEEEE-SSS
T ss_pred ---------------------------------------------------------------ccccCCCceeEEecCCC
Confidence 00123567778888888
Q ss_pred ceEEEeecC-ceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCe
Q 001295 756 NAILALASN-AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGK 832 (1106)
Q Consensus 756 ~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~ 832 (1106)
..+++.-.| +.|.+-|..... .+....+ ..........|+|++++++++. ++.
T Consensus 140 ~~fVv~lkd~~~I~vVdy~d~~---------------------~~~~~~i---~~g~~~~D~~~dpdgry~~va~~~sn~ 195 (369)
T PF02239_consen 140 PEFVVNLKDTGEIWVVDYSDPK---------------------NLKVTTI---KVGRFPHDGGFDPDGRYFLVAANGSNK 195 (369)
T ss_dssp SEEEEEETTTTEEEEEETTTSS---------------------CEEEEEE---E--TTEEEEEE-TTSSEEEEEEGGGTE
T ss_pred CEEEEEEccCCeEEEEEecccc---------------------ccceeee---cccccccccccCcccceeeecccccce
Confidence 866666554 766665544210 0000001 1344566789999999988876 689
Q ss_pred EEEEEcCCCceeeeecC----CCCCeeEE-------EEec-CCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEE
Q 001295 833 ISLFNMMTFKTMATFMP----PPPAATFL-------AFHP-QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 900 (1106)
Q Consensus 833 i~vwd~~~~~~~~~~~~----~~~~v~~l-------~~s~-~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 900 (1106)
|-++|..+++....+.. |..+...+ .|.. ..+...++.-....+.+||..+++.++++...... .-+
T Consensus 196 i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi 274 (369)
T PF02239_consen 196 IAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFI 274 (369)
T ss_dssp EEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---E
T ss_pred eEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-cee
Confidence 99999998877665432 22222222 1211 02223222223345667888888888888876666 667
Q ss_pred EEecCCCEEEEE----cCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCce
Q 001295 901 AFSHALNVLVSS----GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE 976 (1106)
Q Consensus 901 ~~s~d~~~l~s~----s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~ 976 (1106)
..+||+++|... ...++|. ++|.++.+
T Consensus 275 ~thP~s~~vwvd~~~~~~~~~v~-------------------------------------------------viD~~tl~ 305 (369)
T PF02239_consen 275 KTHPDSRYVWVDTFLNPDADTVQ-------------------------------------------------VIDKKTLK 305 (369)
T ss_dssp E--TT-SEEEEE-TT-SSHT-EE-------------------------------------------------EEECCGTE
T ss_pred ecCCCCccEEeeccCCCCCceEE-------------------------------------------------EEECcCcc
Confidence 778888887766 2224444 45555555
Q ss_pred EeeecccCCCCCCeeEEEECCCCCEEEEEEcC--CeEEEEEcCCceeEEeeC
Q 001295 977 CVKQWVPRESSAPITHATFSCDSQLVYACFLD--ATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus 977 ~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D--g~i~vwd~~~~~~~~~~~ 1026 (1106)
.+..+.... ...+..+.|++||+.+..+..+ +.|.|||..|.+++.++.
T Consensus 306 ~~~~i~~~~-~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 306 VVKTITPGP-GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEE-HHHHH-T--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred eeEEEeccC-CCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 554443211 3358999999999986655443 379999999999999887
No 213
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=5.7e-15 Score=153.89 Aligned_cols=238 Identities=11% Similarity=0.157 Sum_probs=172.1
Q ss_pred eccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc--C
Q 001295 346 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--D 423 (1106)
Q Consensus 346 ~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp--d 423 (1106)
+.+|++-|+|++|+.||. +|++|+.|-.+.|||+-..+.++. +-.||...|.++.|-| +
T Consensus 46 L~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFvP~tn 106 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFVPYTN 106 (758)
T ss_pred hccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeeeccCC
Confidence 346999999999999999 699999999999999987777664 4589999999999999 6
Q ss_pred CCEEEEEeCCCeEEEEEccCCc-------eeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCce-eE
Q 001295 424 GSLFGVAYSRHIVQIYSYHGGD-------EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QY 495 (1106)
Q Consensus 424 g~~las~~~d~~v~iwd~~~~~-------~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~ 495 (1106)
.+.+++|..|..|+++|+...+ ...+...+..|...|.-|+-.|++.. .+.++++||+|+-+|++.... -.
T Consensus 107 nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p 185 (758)
T KOG1310|consen 107 NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNP 185 (758)
T ss_pred CeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCc
Confidence 7889999999999999998521 12233356789999999999999966 799999999999999986321 11
Q ss_pred ---------EEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeE-----eeCCCCeeEEE-EEecCCCeE
Q 001295 496 ---------IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD-----YEAPGRWCTTM-AYSADGTRT 560 (1106)
Q Consensus 496 ---------~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~v~~~-~~s~~~~~~ 560 (1106)
.+...--...++.+++... .+|+.|+.|-..++||.+...+... ...+.....++ -|+|++-..
T Consensus 186 ~~~~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn 264 (758)
T KOG1310|consen 186 DEDCPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKN 264 (758)
T ss_pred cccccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccC
Confidence 1111223456777777654 7999999999999999653222110 00111112223 244444322
Q ss_pred EEeeecc---ceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEE
Q 001295 561 YQGFRKR---SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI 604 (1106)
Q Consensus 561 ~~~~~~~---~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 604 (1106)
..|.... .++.+.|+|+|..|+..-....|+++|+..++....+
T Consensus 265 ~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 265 SQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred cccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 2232222 2456889999988888766778999999887765544
No 214
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.61 E-value=4.9e-11 Score=122.87 Aligned_cols=144 Identities=10% Similarity=0.048 Sum_probs=109.1
Q ss_pred cccceEEEEEcCCCceEEEeecCc-eEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEec
Q 001295 742 RATKISRLIFTNSGNAILALASNA-IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 820 (1106)
Q Consensus 742 ~~~~i~~~~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 820 (1106)
+...|.-..+..+++.++.+..|| .+-|++.. ++..... .+.-+.|.++..++
T Consensus 358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~----------------------~~e~kr~----e~~lg~I~av~vs~ 411 (668)
T COG4946 358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD----------------------GGEVKRI----EKDLGNIEAVKVSP 411 (668)
T ss_pred CCCceEEEEEccCCcceEEeccCCceEEEEecC----------------------CceEEEe----eCCccceEEEEEcC
Confidence 445566666666777788888887 77777655 3332222 12567799999999
Q ss_pred CCCEEEEEeC-CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCC----cEEEEEeecceEEEEecCccc
Q 001295 821 NDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS----SIQIYNVRVDEVKSKLKGHSK 895 (1106)
Q Consensus 821 ~~~~l~~~sd-g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg----~v~iwd~~~~~~~~~l~~h~~ 895 (1106)
+|++++++.| ..|.+.|++++.....-+...+-|+.++|+| +++++|.+.-+| .|++||+..++....-. ..+
T Consensus 412 dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta 489 (668)
T COG4946 412 DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTA 489 (668)
T ss_pred CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-Ccc
Confidence 9999999984 7899999999987766666677899999999 999999988777 78999999888654432 333
Q ss_pred CeeEEEEecCCCEEEEEc
Q 001295 896 RITGLAFSHALNVLVSSG 913 (1106)
Q Consensus 896 ~V~~l~~s~d~~~l~s~s 913 (1106)
.=.+-+|.||+++|.--+
T Consensus 490 ~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 490 YDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred cccCcccCCCCcEEEEEe
Confidence 345678999999887654
No 215
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.61 E-value=3.9e-12 Score=144.26 Aligned_cols=198 Identities=14% Similarity=0.205 Sum_probs=150.4
Q ss_pred CCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCc---CeEEEEEccCCCEE
Q 001295 351 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV---SVNRVIWSPDGSLF 427 (1106)
Q Consensus 351 ~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~---~V~~l~~spdg~~l 427 (1106)
+.|....+.-..+ .++.++.++.+.|||...+..+.. +...... ...-+-++++.=++
T Consensus 88 ~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~------------------i~~~er~~l~~~~~~g~s~~~~~i 148 (967)
T KOG0974|consen 88 DWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSK------------------IQSDERCTLYSSLIIGDSAEELYI 148 (967)
T ss_pred ccccccchhhhcc-eEEEEEcCceEEEEecccCceehh------------------cCCCceEEEEeEEEEeccCcEEEE
Confidence 4444455666666 488888899999999987655432 0111111 22234467777899
Q ss_pred EEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeE-EEeccCCCeEE
Q 001295 428 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY-IFEGHEAPVYS 506 (1106)
Q Consensus 428 as~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~ 506 (1106)
++|+.-+.|.+|+....+... .+.||.+.|.++.|+.||+ ++++.|+|+++++|++++++... +.-+|.+.|+.
T Consensus 149 ~~gsv~~~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~ 223 (967)
T KOG0974|consen 149 ASGSVFGEIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA 223 (967)
T ss_pred EeccccccEEEEeccccCCcc---eecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEE
Confidence 999999999999998322111 4789999999999999999 89999999999999999988776 77789999999
Q ss_pred EeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEEC
Q 001295 507 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 586 (1106)
Q Consensus 507 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 586 (1106)
++|++. .+++++.|.+.++|+..-... . .+.+|..+.++.+...++....++++.
T Consensus 224 ~~~~~n----~i~t~gedctcrvW~~~~~~l-~--------------------~y~~h~g~~iw~~~~~~~~~~~vT~g~ 278 (967)
T KOG0974|consen 224 CCFLPN----RIITVGEDCTCRVWGVNGTQL-E--------------------VYDEHSGKGIWKIAVPIGVIIKVTGGN 278 (967)
T ss_pred EEeccc----eeEEeccceEEEEEeccccee-h--------------------hhhhhhhcceeEEEEcCCceEEEeecc
Confidence 998654 799999999999996543211 1 344444556777777777778999999
Q ss_pred CCeEEEEECCC
Q 001295 587 DFSIKFWDMDS 597 (1106)
Q Consensus 587 d~~i~iwd~~~ 597 (1106)
|+.+++|++..
T Consensus 279 Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 279 DSTLKLWDLNG 289 (967)
T ss_pred Ccchhhhhhhc
Confidence 99999999865
No 216
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=3.2e-13 Score=132.37 Aligned_cols=242 Identities=14% Similarity=0.190 Sum_probs=169.6
Q ss_pred CCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCC--CCeeEEEEecCCCceEE-EeeCC------CcEEEEEe
Q 001295 811 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPP--PAATFLAFHPQDNNIIA-IGMDD------SSIQIYNV 881 (1106)
Q Consensus 811 ~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~--~~v~~l~~s~~d~~~la-~g~~d------g~v~iwd~ 881 (1106)
....+++|+.|..-+++|.|...+||+.+-.+.......+. -.+..+-|- .++|| +|+.+ ..|.|||=
T Consensus 6 ~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred CceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEec
Confidence 34566999999999999999889999987644322222122 223333332 23443 44433 37999997
Q ss_pred ecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE
Q 001295 882 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 961 (1106)
Q Consensus 882 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 961 (1106)
...+++.++. ...+|.+|.+.+| .|+..- .+.|.||.+...-+. ...+...... ..+.+++-..+..+||.
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~-l~~~et~~NP----kGlC~~~~~~~k~~Laf 153 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKL-LHVIETRSNP----KGLCSLCPTSNKSLLAF 153 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhh-eeeeecccCC----CceEeecCCCCceEEEc
Confidence 6777887776 6778999999866 455554 567999999853221 1222222211 12233333334455555
Q ss_pred -E-eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCe-EEEEEcCCceeEEeeCCCcccCCCCCCC
Q 001295 962 -V-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSS 1038 (1106)
Q Consensus 962 -~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1106)
| .-|+|.|-|+...+.-......+|.+.|.|++++-+|.++||+|..|+ |||||..+|.+++.+. .|...+
T Consensus 154 Pg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R------RG~d~A 227 (346)
T KOG2111|consen 154 PGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR------RGVDRA 227 (346)
T ss_pred CCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee------cCCchh
Confidence 4 669999999977665322334589999999999999999999999998 8999999999999876 333345
Q ss_pred CccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295 1039 NVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus 1039 ~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
.++ .++|+| |..+|+++|+-|+|+|+.+....
T Consensus 228 ~iy--~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 228 DIY--CIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred eEE--EEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 577 999999 78999999999999999998765
No 217
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1.8e-13 Score=155.57 Aligned_cols=224 Identities=13% Similarity=0.140 Sum_probs=148.8
Q ss_pred cCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCC---CeEEEEEccCCceee
Q 001295 372 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVR 448 (1106)
Q Consensus 372 dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---~~v~iwd~~~~~~~~ 448 (1106)
+..|.|||....... .+..|...|...+|||||++||.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~--------------------~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQF--------------------IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCce--------------------EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 468999998754422 256778889999999999999988644 479999999876432
Q ss_pred eeeeeccccCCeeEEEEcCCCCceEEEE-ecCCCcEEEE--eCCCCceeEEEeccCCCeEEEeccccCCceEEE-EEecC
Q 001295 449 QHLEIDAHVGGVNDIAFSHPNKQLCVIT-CGDDKTIKVW--DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIF-STALD 524 (1106)
Q Consensus 449 ~~~~l~~h~~~V~~~~~s~d~~~~~l~s-~~~d~~i~iw--d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d 524 (1106)
+..+.+| ...++|+|||+. |+. .+.+|.+.|| |+.++. ...+..+...+....|+++ |+.|+ +...+
T Consensus 243 -l~~~~g~---~~~~~wSPDG~~--La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpD--G~~i~f~s~~~ 313 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGSR--LAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPD--GQSILFTSDRS 313 (429)
T ss_pred -EecCCCc---cCceeECCCCCE--EEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCC--CCEEEEEECCC
Confidence 2234444 446899999994 544 4567766555 665555 4566667777888888655 45555 44467
Q ss_pred CeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEE
Q 001295 525 GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI 604 (1106)
Q Consensus 525 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 604 (1106)
|...+|+++..........+.. ....|+|+|++++..+.++ +.+||+.+++.....
T Consensus 314 g~~~I~~~~~~~~~~~~l~~~~-----------------------~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt 369 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGGRG-----------------------YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLS 369 (429)
T ss_pred CCceEEEEECCCCCeEEecCCC-----------------------CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEec
Confidence 8889998764322211111111 1234666667787777655 566999888765332
Q ss_pred ccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEcc--CCchhhhhhcccc
Q 001295 605 DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS--DGIRLLRTFENLA 653 (1106)
Q Consensus 605 ~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~ 653 (1106)
... ....+.|+|||++|+.++.++.+.+|++. ++ ...+.+..|.
T Consensus 370 ~~~----~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G-~~~~~l~~~~ 415 (429)
T PRK01742 370 STF----LDESPSISPNGIMIIYSSTQGLGKVLQLVSADG-RFKARLPGSD 415 (429)
T ss_pred CCC----CCCCceECCCCCEEEEEEcCCCceEEEEEECCC-CceEEccCCC
Confidence 221 23568899999999999999999888763 34 4455554443
No 218
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.57 E-value=2e-12 Score=141.42 Aligned_cols=322 Identities=14% Similarity=0.121 Sum_probs=194.2
Q ss_pred ceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEE
Q 001295 471 QLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTT 550 (1106)
Q Consensus 471 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 550 (1106)
.+++++-..++.|.|.|..+.+.+.++......-..+.+ ++||+++++++.||.|.++|+.+.+.+..+... ....+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~ 82 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKF--SPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRG 82 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEe--cCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcce
Confidence 345677788999999999999999999865443333454 566688999999999999999998876666543 33456
Q ss_pred EEEecCCCeEEEeeeccceeEEEEcCCCCEEEEE-ECCCeEEEEECCCcceeEEEccCCC-----CCCcCeEEEccCCCE
Q 001295 551 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDADGG-----LPASPRIRFNKDGCL 624 (1106)
Q Consensus 551 ~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~-----~~~v~~v~~s~~~~~ 624 (1106)
+++++||+ +++++ ..++.+.++|..+.+.++.+...+. ...+..+..++....
T Consensus 83 i~~s~DG~---------------------~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~ 141 (369)
T PF02239_consen 83 IAVSPDGK---------------------YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE 141 (369)
T ss_dssp EEE--TTT---------------------EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE
T ss_pred EEEcCCCC---------------------EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCE
Confidence 66666665 66655 4789999999999999988754321 224566777888776
Q ss_pred EEEEeC-CCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCcccc
Q 001295 625 LAVSTN-DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSL 703 (1106)
Q Consensus 625 l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1106)
++..-. .+.|.+.|..+......
T Consensus 142 fVv~lkd~~~I~vVdy~d~~~~~~-------------------------------------------------------- 165 (369)
T PF02239_consen 142 FVVNLKDTGEIWVVDYSDPKNLKV-------------------------------------------------------- 165 (369)
T ss_dssp EEEEETTTTEEEEEETTTSSCEEE--------------------------------------------------------
T ss_pred EEEEEccCCeEEEEEeccccccce--------------------------------------------------------
Confidence 655554 46776666544311000
Q ss_pred CCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeec-CceEEEeeccccccCCCCc
Q 001295 704 ADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGK 782 (1106)
Q Consensus 704 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~ 782 (1106)
+..+ .........|+|++++++++.. ...+-++|......
T Consensus 166 ---------------~~i~-------------------~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~----- 206 (369)
T PF02239_consen 166 ---------------TTIK-------------------VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL----- 206 (369)
T ss_dssp ---------------EEEE---------------------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE-----
T ss_pred ---------------eeec-------------------ccccccccccCcccceeeecccccceeEEEeeccceE-----
Confidence 0000 1223456789999998877654 57787887654321
Q ss_pred cccccCccccCCCCCCccccccCCCCCCCCeeEE---------EEecCCCEEEEE-eCCeEEEEEcCCCceeeeecCCCC
Q 001295 783 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF---------ALSKNDSYVMSA-SGGKISLFNMMTFKTMATFMPPPP 852 (1106)
Q Consensus 783 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l---------~~s~~~~~l~~~-sdg~i~vwd~~~~~~~~~~~~~~~ 852 (1106)
+..+..|.. .|..+...+ +....+...++. +.+.+.+|+..+++.++++.....
T Consensus 207 --------v~~i~~g~~--------p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~ 270 (369)
T PF02239_consen 207 --------VALIDTGKK--------PHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGG 270 (369)
T ss_dssp --------EEEEE-SSS--------BEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSS
T ss_pred --------EEEeecccc--------ccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCC
Confidence 111111111 011122111 112233333222 245677899999999999987766
Q ss_pred CeeEEEEecCCCceEEEe----eCCCcEEEEEeecceEEEEecCcc-cCeeEEEEecCCCEEEEEcCC--CcEEEEeCCC
Q 001295 853 AATFLAFHPQDNNIIAIG----MDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVLVSSGAD--SQLCVWSSDG 925 (1106)
Q Consensus 853 ~v~~l~~s~~d~~~la~g----~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~s~s~D--g~i~vwd~~~ 925 (1106)
. ..+..+| +++++.+. ...++|.++|..+.+.+.++.... ..+..+.|++||+.+..+..+ +.|.|||..+
T Consensus 271 g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~T 348 (369)
T PF02239_consen 271 G-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKT 348 (369)
T ss_dssp S---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTT
T ss_pred c-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCC
Confidence 6 8888899 88888887 456899999999998888875433 358899999999976655444 3699999999
Q ss_pred cccc
Q 001295 926 WEKQ 929 (1106)
Q Consensus 926 ~~~~ 929 (1106)
.+..
T Consensus 349 l~~~ 352 (369)
T PF02239_consen 349 LKEK 352 (369)
T ss_dssp TEEE
T ss_pred cEEE
Confidence 6643
No 219
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=2e-13 Score=155.25 Aligned_cols=220 Identities=13% Similarity=0.119 Sum_probs=143.9
Q ss_pred eeccCCCCcEEEEEecCCCeEEEEEecc---CcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEc
Q 001295 345 RTLNQGSSPMSMDFHPVQQTLLLVGTNV---GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 421 (1106)
Q Consensus 345 ~~~~h~~~v~~~~~sp~g~~llatg~~d---g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 421 (1106)
.+..|...+...+|||||++ |+..+.+ ..|.+||+.+++..... .+.+| ...++||
T Consensus 198 ~lt~~~~~v~~p~wSPDG~~-la~~s~~~~~~~i~i~dl~tg~~~~l~-----------------~~~g~---~~~~~wS 256 (429)
T PRK01742 198 IVNRSSQPLMSPAWSPDGSK-LAYVSFENKKSQLVVHDLRSGARKVVA-----------------SFRGH---NGAPAFS 256 (429)
T ss_pred EeccCCCccccceEcCCCCE-EEEEEecCCCcEEEEEeCCCCceEEEe-----------------cCCCc---cCceeEC
Confidence 34457888999999999997 4554433 36999999887643210 12333 3468999
Q ss_pred cCCCEEEEEe-CCCeEEEE--EccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC-CceeEEE
Q 001295 422 PDGSLFGVAY-SRHIVQIY--SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQYIF 497 (1106)
Q Consensus 422 pdg~~las~~-~d~~v~iw--d~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~ 497 (1106)
|||++|+.++ .+|.+.|| |+.+++.. .+..|...+....|+|||+. +++++..++...||++.. +.....+
T Consensus 257 PDG~~La~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 257 PDGSRLAFASSKDGVLNIYVMGANGGTPS----QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred CCCCEEEEEEecCCcEEEEEEECCCCCeE----eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEECCCCCeEEe
Confidence 9999998865 67766555 66665532 35667778899999999995 344555678888887653 2223333
Q ss_pred eccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCC
Q 001295 498 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 577 (1106)
Q Consensus 498 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~ 577 (1106)
.+.. ....|+ ++|+.|+..+.++ +.+||+.++........ .... ...|+|+
T Consensus 332 -~~~~--~~~~~S--pDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~---------------------~~~~sPd 382 (429)
T PRK01742 332 -GGRG--YSAQIS--ADGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDE---------------------SPSISPN 382 (429)
T ss_pred -cCCC--CCccCC--CCCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCC---------------------CceECCC
Confidence 3433 345564 4557888777765 55589876543321111 1111 2446666
Q ss_pred CCEEEEEECCCeEEEEEC--CCcceeEEEccCCCCCCcCeEEEccC
Q 001295 578 KNRFLAAGDDFSIKFWDM--DSVQLLTSIDADGGLPASPRIRFNKD 621 (1106)
Q Consensus 578 ~~~l~~~~~d~~i~iwd~--~~~~~~~~~~~~~~~~~v~~v~~s~~ 621 (1106)
|++++.++.++.+.+|.+ .+|+.+..+..+. ..+...+|+|-
T Consensus 383 G~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~--g~~~~p~wsp~ 426 (429)
T PRK01742 383 GIMIIYSSTQGLGKVLQLVSADGRFKARLPGSD--GQVKFPAWSPY 426 (429)
T ss_pred CCEEEEEEcCCCceEEEEEECCCCceEEccCCC--CCCCCcccCCC
Confidence 678998888888888775 3577777776553 35788899883
No 220
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.55 E-value=6.1e-13 Score=130.41 Aligned_cols=242 Identities=15% Similarity=0.140 Sum_probs=180.2
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCC---ceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec-
Q 001295 809 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF---KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV- 883 (1106)
Q Consensus 809 ~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~---~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~- 883 (1106)
...+|+|.+|++|+..+|++. ...|.||..... +..+++..|...|+.|+|+| ....|++++.|..-+||...+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCC
Confidence 467899999999999999998 578999988754 46788999999999999999 888999999999999999833
Q ss_pred --ceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE
Q 001295 884 --DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 961 (1106)
Q Consensus 884 --~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 961 (1106)
.+..-.+..|...+++|.|+|.++.+|+||.-..|.||-++.... -.....+.. +....|.++.|.|++-+|++
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd-WWVsKhikk---PirStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND-WWVSKHIKK---PIRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc-eehhhhhCC---ccccceeeeeccCCcceecc
Confidence 345556667899999999999999999999999999998765221 111111111 12257899999999999999
Q ss_pred -EeCCeEEEEecC-----C-------------ceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCcee-
Q 001295 962 -VHETQLAIFETT-----K-------------LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL- 1021 (1106)
Q Consensus 962 -~~d~~v~i~d~~-----~-------------~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~- 1021 (1106)
+.|+..+||..- . |+.+.++. ...+.|..+.|+|+|..|+-.+.|++|.+=|......
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~ 241 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSER 241 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchh
Confidence 589998888641 1 12222232 3367899999999999999999999999999877653
Q ss_pred EEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEee
Q 001295 1022 RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1069 (1106)
Q Consensus 1022 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~ 1069 (1106)
...+. ..++|- +++.|.. .+.++.++.|..=.++..
T Consensus 242 v~~~~-~~~lP~---------ls~~~is--e~~vv~ag~~c~P~lf~~ 277 (361)
T KOG1523|consen 242 VQSVA-TAQLPL---------LSVSWIS--ENSVVAAGYDCGPVLFVT 277 (361)
T ss_pred ccchh-hccCCc---------eeeEeec--CCceeecCCCCCceEEEe
Confidence 22222 222442 2566665 356666666654444433
No 221
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=6.7e-12 Score=124.97 Aligned_cols=289 Identities=12% Similarity=0.134 Sum_probs=180.7
Q ss_pred CccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccc
Q 001295 707 KPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATAS 786 (1106)
Q Consensus 707 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 786 (1106)
..++++..|..|++|+-.. .....++ ......|++++|-|.+...++.+-.+.|.+|..+........
T Consensus 111 ~~fava~nddvVriy~kss-t~pt~Lk------s~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~----- 178 (445)
T KOG2139|consen 111 IAFAVATNDDVVRIYDKSS-TCPTKLK------SVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRN----- 178 (445)
T ss_pred hhhhhhccCcEEEEeccCC-CCCceec------chhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccc-----
Confidence 4578889999999999776 2222222 225678999999998776666666778999987643211000
Q ss_pred cCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCC
Q 001295 787 VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN 864 (1106)
Q Consensus 787 ~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~ 864 (1106)
++ -..+.. ...+++.+| ..|+++.+.+||..+++++ |..|.|||.+++..+.......+.++-+.||| |+
T Consensus 179 --~~--~~s~~~--~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dg 250 (445)
T KOG2139|consen 179 --IR--MMSTHH--LQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DG 250 (445)
T ss_pred --cc--cccccc--hhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CC
Confidence 00 000111 111222234 7899999999999999998 68899999999887766645567799999999 89
Q ss_pred ceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccc--c--------ce--
Q 001295 865 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ--K--------NR-- 932 (1106)
Q Consensus 865 ~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~--~--------~~-- 932 (1106)
.+|..++-|+..++|+.....-.....-.++.|..-+|+|+|++|..+... .-++|.+.-.... . ..
T Consensus 251 d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~~lli 329 (445)
T KOG2139|consen 251 DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLI 329 (445)
T ss_pred CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCccccCcccceeeeee
Confidence 999999999999999544322222333345589999999999876544322 2344443221100 0 00
Q ss_pred ----eecccCCCCCCCCCCceEEEcCCCcEEEEEeCC---------eEEEEecCCceEeeecccCC-CCCCeeEEEECC-
Q 001295 933 ----FLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET---------QLAIFETTKLECVKQWVPRE-SSAPITHATFSC- 997 (1106)
Q Consensus 933 ----~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~---------~v~i~d~~~~~~~~~~~~~~-h~~~v~~l~~s~- 997 (1106)
...+..+....-+.+.+++|.|.|.+||+...+ .|.+||....-.+....++. .......|+|.|
T Consensus 330 aDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl 409 (445)
T KOG2139|consen 330 ADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPL 409 (445)
T ss_pred ccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeec
Confidence 011112222223567899999999999995322 35667776554433321110 122355666665
Q ss_pred --CCCEEEEEEcCCeEEEEEc
Q 001295 998 --DSQLVYACFLDATVCVFSA 1016 (1106)
Q Consensus 998 --d~~~l~t~s~Dg~i~vwd~ 1016 (1106)
++.+|..+=..|.+.-|++
T Consensus 410 ~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 410 KNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred ccCCcEEEEEeccCceEeeee
Confidence 5666666655666666654
No 222
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1.6e-12 Score=129.36 Aligned_cols=256 Identities=16% Similarity=0.182 Sum_probs=168.9
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc-CCCEE
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLF 427 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 427 (1106)
..-.+..++|++.-- -+|++..|-.|+|||-.. +.... +-..-...|+|++|-| .++-|
T Consensus 97 s~~dlr~~aWhqH~~-~fava~nddvVriy~kss-t~pt~------------------Lks~sQrnvtclawRPlsasel 156 (445)
T KOG2139|consen 97 SEIDLRGVAWHQHII-AFAVATNDDVVRIYDKSS-TCPTK------------------LKSVSQRNVTCLAWRPLSASEL 156 (445)
T ss_pred hhcceeeEeechhhh-hhhhhccCcEEEEeccCC-CCCce------------------ecchhhcceeEEEeccCCccee
Confidence 345678899999554 378889999999999765 22111 1123355899999999 55677
Q ss_pred EEEeCCCeEEEEEccCCcee-----------eeeeeeccccCCeeEEEEcCCCCceEEEEec-CCCcEEEEeCCCCceeE
Q 001295 428 GVAYSRHIVQIYSYHGGDEV-----------RQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDKTIKVWDATNGAKQY 495 (1106)
Q Consensus 428 as~~~d~~v~iwd~~~~~~~-----------~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~-~d~~i~iwd~~~~~~~~ 495 (1106)
++|+..| |.||.....-.. .++....|| .+|+++.|.+||. .+++++ .|..|.|||..++..+.
T Consensus 157 avgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~p 232 (445)
T KOG2139|consen 157 AVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIP 232 (445)
T ss_pred eeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCccc
Confidence 7787766 999987531111 122234466 6899999999999 677776 57889999999998776
Q ss_pred EEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeec-cceeEEEE
Q 001295 496 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK-RSLGVVQF 574 (1106)
Q Consensus 496 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~-~~i~~~~~ 574 (1106)
-..-..+.+.-+.|+|+. .+|+++.-|+..++|...............+.|..-+|+|+|+.++..... ..+..+.|
T Consensus 233 L~~~glgg~slLkwSPdg--d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f 310 (445)
T KOG2139|consen 233 LIPKGLGGFSLLKWSPDG--DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTF 310 (445)
T ss_pred ccccCCCceeeEEEcCCC--CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEee
Confidence 554456778888986655 689999999999999655443333344445588999999999876554433 34445555
Q ss_pred cCCCCEEE-EEECCCeEEEEECCCcceeEEEccC-CCCCCcCeEEEccCCCEEEEEeCCCc
Q 001295 575 DTTKNRFL-AAGDDFSIKFWDMDSVQLLTSIDAD-GGLPASPRIRFNKDGCLLAVSTNDNG 633 (1106)
Q Consensus 575 ~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~ 633 (1106)
......+. .++....+-+-|+..-. ...+. --.+...+++|.|.|.+|++....+.
T Consensus 311 ~~~~~~~~~~~~~k~~lliaDL~e~t---i~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 311 DGEDSVFLRPQSIKRVLLIADLQEVT---ICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred cCCCccccCcccceeeeeeccchhhh---hhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 54433332 23333333344432111 11110 00235788999999999999876543
No 223
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=1.6e-11 Score=132.37 Aligned_cols=548 Identities=11% Similarity=0.104 Sum_probs=310.5
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 428 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 428 (1106)
.+....|++|+....| +|+|+.||.++|-.+.+...-... --+...+.-....++.||.+.|.-+.|+.+.+.|-
T Consensus 13 nnvkL~c~~WNke~gy-IAcgG~dGlLKVlKl~t~t~d~~~----~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLT 87 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGY-IACGGADGLLKVLKLGTDTTDLNK----SGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLT 87 (1189)
T ss_pred CCceEEEEEEcccCCe-EEeccccceeEEEEccccCCcccc----cccccccccchhhhhccCcceEEEEEecccccccc
Confidence 4567889999999986 999999999999988764322110 00112222234457899999999999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCcee-EEEeccCCCeEEE
Q 001295 429 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-YIFEGHEAPVYSV 507 (1106)
Q Consensus 429 s~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~h~~~v~~~ 507 (1106)
+...+|.|.||-+-.|...... .-......|.+++|+.||. .+.....||.|.|=.++..+.- +.+++. ....+
T Consensus 88 tSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv 162 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHV 162 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchh--eccce
Confidence 9999999999999887765432 1234567899999999999 5777778888876665433211 122221 12245
Q ss_pred eccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCe-eEEE-EEecCCCeEEEeeeccceeEEEEcCCCCEEEEEE
Q 001295 508 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW-CTTM-AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 585 (1106)
Q Consensus 508 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~-~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 585 (1106)
.|+++ ...++.+-..|.+.++|....-.. +.+... |+.- .++.-+.+ +.++....-...-.-|+...++.+-
T Consensus 163 ~ws~D--~~~~Lf~~ange~hlydnqgnF~~---Kl~~~c~Vn~tg~~s~~~~k-ia~i~w~~g~~~~v~pdrP~lavcy 236 (1189)
T KOG2041|consen 163 LWSED--LEQALFKKANGETHLYDNQGNFER---KLEKDCEVNGTGIFSNFPTK-IAEIEWNTGPYQPVPPDRPRLAVCY 236 (1189)
T ss_pred eeccc--HHHHHhhhcCCcEEEecccccHHH---hhhhceEEeeeeeecCCCcc-ccceeeccCccccCCCCCCEEEEEE
Confidence 56444 366777778899999987532111 111111 1111 12222221 1111111111122346778899999
Q ss_pred CCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCC
Q 001295 586 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP 665 (1106)
Q Consensus 586 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (1106)
..|.+.+-.-.+...-..+... -.+....|+++|..|++++.+..-.- +..+. .+.
T Consensus 237 ~nGr~QiMR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~-~~d~n--~v~------------------ 292 (1189)
T KOG2041|consen 237 ANGRMQIMRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADE-PTDSN--KVH------------------ 292 (1189)
T ss_pred cCceehhhhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccC-ccccc--eEE------------------
Confidence 9999888754443322222211 25778999999999999887532100 00000 000
Q ss_pred CcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccc
Q 001295 666 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK 745 (1106)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 745 (1106)
-++++| .....+.. ....
T Consensus 293 Fysp~G----------------------------------------------------------~i~gtlkv----pg~~ 310 (1189)
T KOG2041|consen 293 FYSPYG----------------------------------------------------------HIVGTLKV----PGSC 310 (1189)
T ss_pred Eeccch----------------------------------------------------------hheEEEec----CCce
Confidence 011111 00011111 2244
Q ss_pred eEEEEEcCCCceEEEeecCceEEEeecccc----------ccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeE
Q 001295 746 ISRLIFTNSGNAILALASNAIHLLWKWQRT----------ERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 815 (1106)
Q Consensus 746 i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~----------~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~ 815 (1106)
|++++|-..|-.++.+ -|+.|.+=+++.. .+--.+.......+.+||..+.+.... .-....+
T Consensus 311 It~lsWEg~gLriA~A-vdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK------~V~~~~~ 383 (1189)
T KOG2041|consen 311 ITGLSWEGTGLRIAIA-VDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVK------TVTHFEN 383 (1189)
T ss_pred eeeeEEcCCceEEEEE-ecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhh------hhcceee
Confidence 5555555554433322 2333333222211 000111222333566788777653332 1223456
Q ss_pred EEEecCCCEEEEEe-CCeEEEEEc-CCCceeeeec-----C--CCCCeeEE--EEecCCCceEEEeeCCCcEEEEEeecc
Q 001295 816 FALSKNDSYVMSAS-GGKISLFNM-MTFKTMATFM-----P--PPPAATFL--AFHPQDNNIIAIGMDDSSIQIYNVRVD 884 (1106)
Q Consensus 816 l~~s~~~~~l~~~s-dg~i~vwd~-~~~~~~~~~~-----~--~~~~v~~l--~~s~~d~~~la~g~~dg~v~iwd~~~~ 884 (1106)
+++..+--.|+.-. +|.|.-++. ++...+..+. + -....+.+ .|-..++.+++.++.+ .+.+|.....
T Consensus 384 ~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy~~p 462 (1189)
T KOG2041|consen 384 MAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHYVLP 462 (1189)
T ss_pred hheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEEecc
Confidence 77766655555555 566655432 1211111110 0 01111111 1221256677777765 6788876321
Q ss_pred e--------------------------------EEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccce
Q 001295 885 E--------------------------------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNR 932 (1106)
Q Consensus 885 ~--------------------------------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~ 932 (1106)
+ -..++.|..++|.+++.+ .++|..+-..|.|.-|.+.+......
T Consensus 463 K~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~- 539 (1189)
T KOG2041|consen 463 KFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNS- 539 (1189)
T ss_pred chhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeec-
Confidence 1 013455677888888886 57888899999999999987432111
Q ss_pred eecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecC---CceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC
Q 001295 933 FLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT---KLECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1008 (1106)
Q Consensus 933 ~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~---~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D 1008 (1106)
.+.+..+.+++.+-+...+|+ -.-|.+.+.|+. +++.+..+.. .....|+.+.|..|+..|++-.+-
T Consensus 540 --------y~~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~-~errDVWd~~Wa~dNp~llAlmeK 610 (1189)
T KOG2041|consen 540 --------YPVNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYT-SERRDVWDYEWAQDNPNLLALMEK 610 (1189)
T ss_pred --------cccCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeeh-hhhhhhhhhhhccCCchHHhhhhh
Confidence 112246788888888888887 466778887775 3444443321 236789999999988877766666
Q ss_pred CeEEEEEcCC
Q 001295 1009 ATVCVFSAAN 1018 (1106)
Q Consensus 1009 g~i~vwd~~~ 1018 (1106)
..++|++-.+
T Consensus 611 trmyifrgnd 620 (1189)
T KOG2041|consen 611 TRMYIFRGND 620 (1189)
T ss_pred ceEEEecCcC
Confidence 6788887543
No 224
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=1.2e-12 Score=137.89 Aligned_cols=260 Identities=13% Similarity=0.131 Sum_probs=177.4
Q ss_pred ceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEc
Q 001295 342 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 421 (1106)
Q Consensus 342 ~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 421 (1106)
++.+-+.|....+.+..||||+|++|||..--.|++||+..-.....+. -....|.-.-+|
T Consensus 43 eLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERh-------------------lDae~V~feiLs 103 (703)
T KOG2321|consen 43 ELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERH-------------------LDAEVVDFEILS 103 (703)
T ss_pred HHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeec-------------------ccccceeEEEec
Confidence 3556677889999999999999999999999999999998654433211 112345555566
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccC
Q 001295 422 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 501 (1106)
Q Consensus 422 pdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 501 (1106)
-|-..++.-..|.+|-+..--+ ... .+. -...-..++++.-.-. |..++....|+-.+++.|+.+..|....
T Consensus 104 DD~SK~v~L~~DR~IefHak~G-~hy----~~R-IP~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~ 175 (703)
T KOG2321|consen 104 DDYSKSVFLQNDRTIEFHAKYG-RHY----RTR-IPKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDS 175 (703)
T ss_pred cchhhheEeecCceeeehhhcC-eee----eee-cCcCCccccccCCCcc--EEEeecCcceEEEEcccccccccccccc
Confidence 6666677777788776654322 111 011 0112244555544442 3444445678999999999999998888
Q ss_pred CCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEE
Q 001295 502 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 581 (1106)
Q Consensus 502 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l 581 (1106)
+.++++.+++.. .+|++|+.+|.|-+||.+.......+..... |.+.... .....++.+.|+.+|-.+
T Consensus 176 ~~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~-v~s~pg~---------~~~~svTal~F~d~gL~~ 243 (703)
T KOG2321|consen 176 GELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASS-VNSHPGG---------DAAPSVTALKFRDDGLHV 243 (703)
T ss_pred ccceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccc-cCCCccc---------cccCcceEEEecCCceeE
Confidence 999999876543 5888888899999999998766655543322 1111111 111246667777777789
Q ss_pred EEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccC--CCEEEEEeCCCcEEEEEccCC
Q 001295 582 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD--GCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 582 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
++|..+|.|.|||+++.+++..-. |....+|..+.|.+. +..+++. +...++|||-.+|
T Consensus 244 aVGts~G~v~iyDLRa~~pl~~kd-h~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~G 304 (703)
T KOG2321|consen 244 AVGTSTGSVLIYDLRASKPLLVKD-HGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTG 304 (703)
T ss_pred EeeccCCcEEEEEcccCCceeecc-cCCccceeeecccccCCCceEEec-chHHhhhcccccC
Confidence 999999999999999998876654 444457889999774 3444443 4478899998877
No 225
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.49 E-value=4.3e-13 Score=140.16 Aligned_cols=154 Identities=19% Similarity=0.287 Sum_probs=116.4
Q ss_pred CCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEE---------eeee--eeccCcCCccccccccCCCCcCeEEE
Q 001295 350 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL---------RNFK--VWDLGACSMPLQAALVKDPGVSVNRV 418 (1106)
Q Consensus 350 ~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~---------~~~~--~~d~~~~~~~~~~~~~~~h~~~V~~l 418 (1106)
+..|+|+.|-|-++.++...-.+|.+.++|..-.-.... ..|. .+.-.....|.. -+.--++.|...
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~--~w~~~~g~in~f 296 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVA--RWHIGEGSINEF 296 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccc--eeEeccccccce
Confidence 478999999998887777778899999997632110000 0011 111110001111 122224589999
Q ss_pred EEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEe
Q 001295 419 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 498 (1106)
Q Consensus 419 ~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 498 (1106)
+|||||++||+.+.||.++|+|..+.+.+. .++.--+...|++|||||+ +|++|++|--|.||.+..++.+..-+
T Consensus 297 ~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg---~mkSYFGGLLCvcWSPDGK--yIvtGGEDDLVtVwSf~erRVVARGq 371 (636)
T KOG2394|consen 297 AFSPDGKYLATVSQDGFLRIFDFDTQELLG---VMKSYFGGLLCVCWSPDGK--YIVTGGEDDLVTVWSFEERRVVARGQ 371 (636)
T ss_pred eEcCCCceEEEEecCceEEEeeccHHHHHH---HHHhhccceEEEEEcCCcc--EEEecCCcceEEEEEeccceEEEecc
Confidence 999999999999999999999999977655 3444557899999999999 89999999999999999999999999
Q ss_pred ccCCCeEEEecc
Q 001295 499 GHEAPVYSVCPH 510 (1106)
Q Consensus 499 ~h~~~v~~~~~~ 510 (1106)
||...|..++|.
T Consensus 372 GHkSWVs~VaFD 383 (636)
T KOG2394|consen 372 GHKSWVSVVAFD 383 (636)
T ss_pred ccccceeeEeec
Confidence 999999999986
No 226
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.49 E-value=1.2e-12 Score=136.84 Aligned_cols=217 Identities=14% Similarity=0.184 Sum_probs=150.9
Q ss_pred CCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCc-eEEEeecCceEEEeeccccc--cCCC
Q 001295 704 ADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGN-AILALASNAIHLLWKWQRTE--RNSS 780 (1106)
Q Consensus 704 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~--~~~~ 780 (1106)
+++-.++.|-..|.+.+.+........ .+..........++++.|-|.+. .++++-.+|.+++||..... ..+.
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sk---lfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~ 259 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSK---LFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPS 259 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHH---hhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCc
Confidence 445556677777777777765411111 11111122457899999988654 45666668999999864321 1111
Q ss_pred Ccccccc---CccccCCCCC-CccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCee
Q 001295 781 GKATASV---APQLWQPPSG-IMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAAT 855 (1106)
Q Consensus 781 ~~~~~~~---~~~~w~~~~~-~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~ 855 (1106)
....... .+..|-.... ..+..... -...|..++|+|||++||+.+ ||.+||||..+.+++..++.--+...
T Consensus 260 ~~~~k~~~~f~i~t~ksk~~rNPv~~w~~---~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLL 336 (636)
T KOG2394|consen 260 YQALKDGDQFAILTSKSKKTRNPVARWHI---GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLL 336 (636)
T ss_pred ccccCCCCeeEEeeeeccccCCccceeEe---ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceE
Confidence 1111100 1111111111 11111111 245788999999999999999 99999999999888877776677899
Q ss_pred EEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEec-------------------------------
Q 001295 856 FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH------------------------------- 904 (1106)
Q Consensus 856 ~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~------------------------------- 904 (1106)
|++||| ||+||++|++|.-|.||.+...+++..-+||..-|..|+|.|
T Consensus 337 CvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~ 415 (636)
T KOG2394|consen 337 CVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANG 415 (636)
T ss_pred EEEEcC-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCC
Confidence 999999 999999999999999999999999999999999999999972
Q ss_pred C----C-------------CEEEEEcCCCcEEEEeCCCcc
Q 001295 905 A----L-------------NVLVSSGADSQLCVWSSDGWE 927 (1106)
Q Consensus 905 d----~-------------~~l~s~s~Dg~i~vwd~~~~~ 927 (1106)
+ + -.+.|++.|..+.+||+....
T Consensus 416 ~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 416 TGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred CCCcCCCcccccccccceEEEeecccccceEEEEecchhh
Confidence 0 1 157789999999999997643
No 227
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.48 E-value=1.4e-13 Score=141.09 Aligned_cols=232 Identities=12% Similarity=0.112 Sum_probs=184.8
Q ss_pred CCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEE
Q 001295 810 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 888 (1106)
Q Consensus 810 ~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~ 888 (1106)
......+.++.+|++|+.|+ .|.|..+|..++++...+. -...|..+.|-. +.+++|++ ....++||| ..|..+.
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LH-neq~~AVA-QK~y~yvYD-~~GtElH 204 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLH-NEQFFAVA-QKKYVYVYD-NNGTELH 204 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhc-chHHHHhh-hhceEEEec-CCCcEEe
Confidence 44567899999999999998 7999999999999888876 345688999988 78888876 567999999 5577788
Q ss_pred EecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeE
Q 001295 889 KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQL 967 (1106)
Q Consensus 889 ~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v 967 (1106)
.++.|. .|..|.|-|-.-+|++++..|.++.-|+.+|+.... +... .+.+..+.-+|-+-.+-+| ..|+|
T Consensus 205 Clk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~--~~t~------~G~~~vm~qNP~NaVih~GhsnGtV 275 (545)
T KOG1272|consen 205 CLKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVAS--IRTG------AGRTDVMKQNPYNAVIHLGHSNGTV 275 (545)
T ss_pred ehhhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHH--HHcc------CCccchhhcCCccceEEEcCCCceE
Confidence 888765 489999999999999999999999999999875332 1111 1356778888988888886 78999
Q ss_pred EEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEE
Q 001295 968 AIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAA 1047 (1106)
Q Consensus 968 ~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1047 (1106)
.+|.....+.+..+. .|.++|.+|++.++|+|+||++.|..++|||+.....+..+. .|++ .. .+++
T Consensus 276 SlWSP~skePLvKiL--cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~----tp~~-----a~--~ls~ 342 (545)
T KOG1272|consen 276 SLWSPNSKEPLVKIL--CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR----TPHP-----AS--NLSL 342 (545)
T ss_pred EecCCCCcchHHHHH--hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceee----cCCC-----cc--cccc
Confidence 999999888776665 789999999999999999999999999999999887665554 2332 22 4667
Q ss_pred eCCCCCEEEEEeCCCcEEEEeec
Q 001295 1048 HPQEPNEFALGLSDGGVHVFEPL 1070 (1106)
Q Consensus 1048 ~~~d~~~l~t~~~Dg~v~vW~~~ 1070 (1106)
|. ..+| +.+.-..|.+|.=.
T Consensus 343 Sq--kglL-A~~~G~~v~iw~d~ 362 (545)
T KOG1272|consen 343 SQ--KGLL-ALSYGDHVQIWKDA 362 (545)
T ss_pred cc--ccce-eeecCCeeeeehhh
Confidence 63 3344 44556678999743
No 228
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.46 E-value=1.5e-08 Score=123.30 Aligned_cols=538 Identities=12% Similarity=0.129 Sum_probs=288.0
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEE----ecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCC
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLW----EVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 424 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iw----d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 424 (1106)
..+.|.++.|-++... ++.+..+|.|.+. +..+.+... ...-...|.|++||||+
T Consensus 74 ~~~~ivs~~yl~d~~~-l~~~~~~Gdi~~~~~~~~~~~~~~E~--------------------VG~vd~GI~a~~WSPD~ 132 (928)
T PF04762_consen 74 PNDKIVSFQYLADSES-LCIALASGDIILVREDPDPDEDEIEI--------------------VGSVDSGILAASWSPDE 132 (928)
T ss_pred CCCcEEEEEeccCCCc-EEEEECCceEEEEEccCCCCCceeEE--------------------EEEEcCcEEEEEECCCc
Confidence 4578999999999985 7778889999999 555544332 23345689999999999
Q ss_pred CEEEEEeCCCeEEEEEcc----C---------C----------ceeeee----------------------eeeccccCC
Q 001295 425 SLFGVAYSRHIVQIYSYH----G---------G----------DEVRQH----------------------LEIDAHVGG 459 (1106)
Q Consensus 425 ~~las~~~d~~v~iwd~~----~---------~----------~~~~~~----------------------~~l~~h~~~ 459 (1106)
..||.++.+++|.+.+-. . | +.-.++ ..+. +...
T Consensus 133 Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~ 211 (928)
T PF04762_consen 133 ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDG 211 (928)
T ss_pred CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCC
Confidence 999999999988876421 0 0 000000 0111 3335
Q ss_pred eeEEEEcCCCCceEEEEecC------CCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEec---CCeEEEE
Q 001295 460 VNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL---DGKIKAW 530 (1106)
Q Consensus 460 V~~~~~s~d~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iw 530 (1106)
-..|+|-.||. +||+.+. -+.++||+ +.|....+-..-.+--.+++|.|++ ++|++.-. ...|.+|
T Consensus 212 ~~~ISWRGDG~--yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrPsG--~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 212 RVRISWRGDGE--YFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRPSG--NLIASSQRLPDRHDVVFF 286 (928)
T ss_pred ceEEEECCCCc--EEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCCCCC--CEEEEEEEcCCCcEEEEE
Confidence 56789999999 6766553 36899999 6677655544333444567776554 67777754 3456666
Q ss_pred eCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCccee--EEEccCC
Q 001295 531 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL--TSIDADG 608 (1106)
Q Consensus 531 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~ 608 (1106)
.-. +-....+... +.+++. .+..+.|++++..|+....|. |.+|...+..-. +.+....
T Consensus 287 ErN-GLrhgeF~l~--------~~~~~~---------~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~ 347 (928)
T PF04762_consen 287 ERN-GLRHGEFTLR--------FDPEEE---------KVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS 347 (928)
T ss_pred ecC-CcEeeeEecC--------CCCCCc---------eeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC
Confidence 422 2111122111 111111 334455555555677766554 999998776522 2232222
Q ss_pred CCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccccccc
Q 001295 609 GLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 687 (1106)
Q Consensus 609 ~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1106)
...+..+.|+| +...|.+.+.+|.+..++..-....-...
T Consensus 348 -~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~-------------------------------------- 388 (928)
T PF04762_consen 348 -SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGS-------------------------------------- 388 (928)
T ss_pred -CCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCC--------------------------------------
Confidence 12345599999 56678888887888766543210000000
Q ss_pred ccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceE
Q 001295 688 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 767 (1106)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 767 (1106)
.++....+..-...++.+-.+.....+.......+ .-...|.+++|++++..+++...||.+
T Consensus 389 ---------------~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l---~~~~~v~~vaf~~~~~~~avl~~d~~l 450 (928)
T PF04762_consen 389 ---------------SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL---ELPSPVNDVAFSPSNSRFAVLTSDGSL 450 (928)
T ss_pred ---------------CccCceEEEEEeCCeEEEecccccCCCchHhceEE---cCCCCcEEEEEeCCCCeEEEEECCCCE
Confidence 00011111111113444444444333333221111 134689999999999889999999999
Q ss_pred EEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-C---CeEEEEEcCCCc-
Q 001295 768 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFK- 842 (1106)
Q Consensus 768 ~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-d---g~i~vwd~~~~~- 842 (1106)
.+|.+.............. ............. ......+..++|..+..+++... + ..+.++++....
T Consensus 451 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 523 (928)
T PF04762_consen 451 SIYEWDLKNMWSVKPPKLL-----SSISLDSMDISDS--ELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSEN 523 (928)
T ss_pred EEEEecCCCcccccCcchh-----hhccccccccccc--ccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCC
Confidence 9998664322110000000 0000000000000 01345678888888887777665 3 468888874332
Q ss_pred --eeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceE-EEEecCcccCeeEEEEecCCC---EEEEEcCCC
Q 001295 843 --TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-KSKLKGHSKRITGLAFSHALN---VLVSSGADS 916 (1106)
Q Consensus 843 --~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~-~~~l~~h~~~V~~l~~s~d~~---~l~s~s~Dg 916 (1106)
.......-.+.+..+...+ +...++.-..+|.|...+...... +..|..- ..-..+....+.. .++.-+..|
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~-c~~~~~~~~~~~~~~~~~~GLs~~~ 601 (928)
T PF04762_consen 524 SASVESSTEVDGVVLIISSSP-DSGSLYIQTNDGKVFQLSSDGELSQIVKFPQP-CPWMEVCQINGSEDKRVLFGLSSNG 601 (928)
T ss_pred ceeEEEEeccCceEEEEeeCC-CCcEEEEEECCCEEEEeecCCCccccccCCCC-CcEEEEEEECCccceeEEEEECCCC
Confidence 2233333344455555555 444466677899888666544321 2223221 1222233333333 455555555
Q ss_pred cEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCC-ceEeeecccCC----CCCCe
Q 001295 917 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK-LECVKQWVPRE----SSAPI 990 (1106)
Q Consensus 917 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~-~~~~~~~~~~~----h~~~v 990 (1106)
.+.+ .. . .+. ..++++++ .+.+|+. .....+++.++.. ........ .. +...+
T Consensus 602 ~Ly~---n~-~-----~la---------~~~tSF~v--~~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~-~~~~~~~de~~ 660 (928)
T PF04762_consen 602 RLYA---NS-R-----LLA---------SNCTSFAV--TDSFLLFTTTQHTLKFVHLNSSVEDLEIPP-DSPENSYDERC 660 (928)
T ss_pred EEEE---CC-E-----EEe---------cCCceEEE--EcCEEEEEecCceEEEEECcCchhhccccc-Ccccccccccc
Confidence 4443 11 1 111 24455555 3444444 6677788888871 11111110 00 11122
Q ss_pred eEEEECCCCCEEEEEEcCCeEEEEEcCCceeE
Q 001295 991 THATFSCDSQLVYACFLDATVCVFSAANLKLR 1022 (1106)
Q Consensus 991 ~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~ 1022 (1106)
..+ ..|..|+++--...=-|..+..|.+.
T Consensus 661 R~V---ERGsriVt~vp~~~~vVLQmPRGNLE 689 (928)
T PF04762_consen 661 RRV---ERGSRIVTAVPSDTSVVLQMPRGNLE 689 (928)
T ss_pred ccC---ccCCEEEEEeCCCceEEEEcCCCchh
Confidence 222 36777777764444455577766554
No 229
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.6e-10 Score=122.59 Aligned_cols=285 Identities=16% Similarity=0.270 Sum_probs=180.0
Q ss_pred ceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCE
Q 001295 745 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 824 (1106)
Q Consensus 745 ~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ 824 (1106)
.+..+-|+|.|.++.+--. |.+... .......+++|+.+++......... .... ++..|+.|..+
T Consensus 75 ~~~~L~fSP~g~yL~T~e~------~~i~~~------~~~~~pn~~v~~vet~~~~s~~q~k--~Q~~-W~~qfs~dEsl 139 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEP------WAIYGP------KNASNPNVLVYNVETGVQRSQIQKK--MQNG-WVPQFSIDESL 139 (566)
T ss_pred eeeeeeecccccccccccc------cccccC------CCCCCCceeeeeeccceehhheehh--hhcC-cccccccchhh
Confidence 5667778888876653211 111000 0000224567777775433321111 2222 58899999887
Q ss_pred EEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecC-CCceEEE-----eeCCCcEEEEEeecceEEEEe--cC--cc
Q 001295 825 VMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ-DNNIIAI-----GMDDSSIQIYNVRVDEVKSKL--KG--HS 894 (1106)
Q Consensus 825 l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~-d~~~la~-----g~~dg~v~iwd~~~~~~~~~l--~~--h~ 894 (1106)
.+--..+.+.+|+..+.+.+.. .-|...|+.+.+||. ....+|+ ++.-+.|+||...-...-..+ +. -.
T Consensus 140 ~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFka 218 (566)
T KOG2315|consen 140 AARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKA 218 (566)
T ss_pred hhhhhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccccc
Confidence 7766688999999987544322 235678999999993 1234544 345568999987632211111 00 11
Q ss_pred cCeeEEEEecCCCE---EEEEcCC---------CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE
Q 001295 895 KRITGLAFSHALNV---LVSSGAD---------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 962 (1106)
Q Consensus 895 ~~V~~l~~s~d~~~---l~s~s~D---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 962 (1106)
+. ..+.|.+-|.- |++..-| .++.+.++++.. ....... .+.|.++.|+|+|+.++++
T Consensus 219 dk-vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s----~~V~L~k-----~GPVhdv~W~~s~~EF~Vv 288 (566)
T KOG2315|consen 219 DK-VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES----VSVPLLK-----EGPVHDVTWSPSGREFAVV 288 (566)
T ss_pred ce-eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce----EEEecCC-----CCCceEEEECCCCCEEEEE
Confidence 22 23667666542 3333334 357777777311 1222221 1589999999999988883
Q ss_pred ---eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC---CeEEEEEcCCceeEEeeCCCcccCCCCC
Q 001295 963 ---HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRCRINPSAYLPAGVS 1036 (1106)
Q Consensus 963 ---~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D---g~i~vwd~~~~~~~~~~~~~~~~~~~~~ 1036 (1106)
.-..+.|||++ +..+..+. .++=.++-|+|.|++|+.++-+ |.|-|||+.+.+++..+. ..
T Consensus 289 yGfMPAkvtifnlr-~~~v~df~----egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~----a~---- 355 (566)
T KOG2315|consen 289 YGFMPAKVTIFNLR-GKPVFDFP----EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK----AA---- 355 (566)
T ss_pred EecccceEEEEcCC-CCEeEeCC----CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc----cC----
Confidence 45789999987 66666665 5678899999999998877644 889999999999988776 11
Q ss_pred CCCccceEEEEeCCCCCEEEEEeC------CCcEEEEeecCCC
Q 001295 1037 SSNVHPLVIAAHPQEPNEFALGLS------DGGVHVFEPLESE 1073 (1106)
Q Consensus 1037 ~~~v~~~~~~~~~~d~~~l~t~~~------Dg~v~vW~~~~~~ 1073 (1106)
....+.|+| ||.+++|+.. |+.++||++....
T Consensus 356 ----~tt~~eW~P-dGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 356 ----NTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred ----CceEEEEcC-CCcEEEEEeccccEEecCCeEEEEecCce
Confidence 122689999 7999988775 5788999986543
No 230
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.45 E-value=7.4e-12 Score=123.99 Aligned_cols=325 Identities=14% Similarity=0.240 Sum_probs=204.0
Q ss_pred cCCCCEEEEEECCCeEEEEEC-CCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccc
Q 001295 575 DTTKNRFLAAGDDFSIKFWDM-DSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 653 (1106)
Q Consensus 575 ~~~~~~l~~~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 653 (1106)
-|..+-+++.+.|.++++|-- +.++.-..+. +.....++++.+.++...|++|-.+|++.-+.+..........+
T Consensus 33 ~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~-~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r--- 108 (404)
T KOG1409|consen 33 IPKEEGVISVSEDRTVRVWLKRDSGQYWPSIY-HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLK--- 108 (404)
T ss_pred ccCCCCeEEccccceeeeEEeccccccCchhh-hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhh---
Confidence 334445999999999999954 4455444443 22345688999999999999999999998876644321111110
Q ss_pred cccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccce
Q 001295 654 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR 733 (1106)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~ 733 (1106)
.|
T Consensus 109 ------------------------------------------------------------------~~------------ 110 (404)
T KOG1409|consen 109 ------------------------------------------------------------------DY------------ 110 (404)
T ss_pred ------------------------------------------------------------------hh------------
Confidence 00
Q ss_pred ecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCe
Q 001295 734 SLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV 813 (1106)
Q Consensus 734 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v 813 (1106)
..|...+..+.|+-....+++.+.|..+. |.... .|..+.... .....
T Consensus 111 ------~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e---------------------~~~~lg~Y~----~~~~~ 158 (404)
T KOG1409|consen 111 ------LAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTE---------------------SGNRLGGYN----FETPA 158 (404)
T ss_pred ------hhhhcceeeEEecCCceeEEEeccccceE-EEeec---------------------cCCcccceE----eeccC
Confidence 23778889999998888899999886654 33211 111111000 01111
Q ss_pred eEEEEecCCCEEEEEe-CCeEEEEEc--CCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecce-EEEE
Q 001295 814 PCFALSKNDSYVMSAS-GGKISLFNM--MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-VKSK 889 (1106)
Q Consensus 814 ~~l~~s~~~~~l~~~s-dg~i~vwd~--~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~-~~~~ 889 (1106)
+++.+.-. +...|. .|.|.+-.+ .....+.++.+|.+.+++++|.+ ..++|.+|..|..|.+||+.-.+ ....
T Consensus 159 t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~e 235 (404)
T KOG1409|consen 159 SALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYE 235 (404)
T ss_pred CCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeee
Confidence 11111111 333443 355544433 45567888999999999999999 88999999999999999997644 3467
Q ss_pred ecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceee-------------------------cccCCCCC-C
Q 001295 890 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFL-------------------------QIPTGRTP-T 943 (1106)
Q Consensus 890 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~-------------------------~~~~~~~~-~ 943 (1106)
+.+|.+.|..++..+--+.|+|++.||.|.+|+++........-+ .....|-. -
T Consensus 236 l~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkc 315 (404)
T KOG1409|consen 236 LQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKC 315 (404)
T ss_pred eccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhh
Confidence 889999999999998899999999999999999876433221100 00000000 0
Q ss_pred CCCCceEEEcCCCcEEEEEeCCeEEEEecCCc-----eE--eeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEc
Q 001295 944 AQSDTRVQFHQDQIHFLVVHETQLAIFETTKL-----EC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1016 (1106)
Q Consensus 944 ~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~-----~~--~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~ 1016 (1106)
...+...+-+.-..+...+.+-.+|+-|.-.. .. +..+ +.-...|+.|.+..+-.+|+|++.|..|+|||+
T Consensus 316 g~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~p--hei~tgItamhlqetlglLvTsG~~Rvi~iwd~ 393 (404)
T KOG1409|consen 316 GKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIP--HEIKTGITAMHLQETLGLLVTSGTDRVIKIWDV 393 (404)
T ss_pred hhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccc--cccccceeEEEhhhhccceeecCCceEEEEEec
Confidence 01122222222222333344444555443111 11 1111 122457999999999999999999999999997
Q ss_pred CC
Q 001295 1017 AN 1018 (1106)
Q Consensus 1017 ~~ 1018 (1106)
..
T Consensus 394 ~~ 395 (404)
T KOG1409|consen 394 RS 395 (404)
T ss_pred hh
Confidence 63
No 231
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.44 E-value=1.2e-10 Score=121.82 Aligned_cols=362 Identities=14% Similarity=0.201 Sum_probs=227.0
Q ss_pred cCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCC-------
Q 001295 408 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD------- 480 (1106)
Q Consensus 408 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d------- 480 (1106)
+....-++..++|||.|++|++....+ |.+|+-..+..+. .+ .| ..|..+.|+|.++ +|++-+..
T Consensus 28 ~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~---~~-~~-~~V~~~~fSP~~k--YL~tw~~~pi~~pe~ 99 (561)
T COG5354 28 FESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLV---RF-RH-PDVKYLDFSPNEK--YLVTWSREPIIEPEI 99 (561)
T ss_pred ccccCcchhheeecCcchheehhhccc-eEEccccchhhee---ee-ec-CCceecccCcccc--eeeeeccCCccChhh
Confidence 344567899999999999999887666 9999988766433 22 23 4699999999999 88886543
Q ss_pred --------CcEEEEeCCCCceeEEEeccCCC--eE-EEeccccCCceEEEEEecCCeEEEEeCCCCCceeEe-eCCCCee
Q 001295 481 --------KTIKVWDATNGAKQYIFEGHEAP--VY-SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRWC 548 (1106)
Q Consensus 481 --------~~i~iwd~~~~~~~~~~~~h~~~--v~-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v 548 (1106)
..+.+||+.+|..+..+.+...+ .+ -+.|+.+. .+++-. ....+.++++...-....+ ......+
T Consensus 100 e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D--~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi 176 (561)
T COG5354 100 EISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDD--KYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGI 176 (561)
T ss_pred ccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecc--hhhhhh-ccCeEEEEecCCccccCchhhccccce
Confidence 35999999999999999876665 44 44554433 344333 3456888886221111111 1123456
Q ss_pred EEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEE
Q 001295 549 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS 628 (1106)
Q Consensus 549 ~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 628 (1106)
...+++|.+.. .. .+-|.|. ..+.++.+++|.+..++.+.+-....- .-..+.|.+.|++|++-
T Consensus 177 ~dFsisP~~n~--------~~-la~~tPE-----k~~kpa~~~i~sIp~~s~l~tk~lfk~--~~~qLkW~~~g~~ll~l 240 (561)
T COG5354 177 LDFSISPEGNH--------DE-LAYWTPE-----KLNKPAMVRILSIPKNSVLVTKNLFKV--SGVQLKWQVLGKYLLVL 240 (561)
T ss_pred eeEEecCCCCC--------ce-EEEEccc-----cCCCCcEEEEEEccCCCeeeeeeeEee--cccEEEEecCCceEEEE
Confidence 77777776531 00 1122221 146788999999987776655433221 12357889999888764
Q ss_pred eCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCc
Q 001295 629 TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKP 708 (1106)
Q Consensus 629 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1106)
... +..+++..+
T Consensus 241 ~~t------~~ksnKsyf-------------------------------------------------------------- 252 (561)
T COG5354 241 VMT------HTKSNKSYF-------------------------------------------------------------- 252 (561)
T ss_pred EEE------eeeccccee--------------------------------------------------------------
Confidence 321 111110000
Q ss_pred cccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEee--cCceEEEeeccccccCCCCccccc
Q 001295 709 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA--SNAIHLLWKWQRTERNSSGKATAS 786 (1106)
Q Consensus 709 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~ 786 (1106)
...++.++++........ ....+.|..++|.|.++.+++.+ ....+.++++..+
T Consensus 253 -----gesnLyl~~~~e~~i~V~--------~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N----------- 308 (561)
T COG5354 253 -----GESNLYLLRITERSIPVE--------KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN----------- 308 (561)
T ss_pred -----ccceEEEEeeccccccee--------ccccccceeeeecccCCceeEEecccccceeecccccc-----------
Confidence 002333333332111100 01457899999999998887666 3577777766531
Q ss_pred cCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-C---CeEEEEEcCCCceee-eecCCCCCeeEEEEec
Q 001295 787 VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFKTMA-TFMPPPPAATFLAFHP 861 (1106)
Q Consensus 787 ~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-d---g~i~vwd~~~~~~~~-~~~~~~~~v~~l~~s~ 861 (1106)
+... .....-..+.|+|.+++++.++ | |.|.+||....-... .+.+. ..+-+.|+|
T Consensus 309 ------------l~~~-----~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wsp 369 (561)
T COG5354 309 ------------LRFY-----FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSP 369 (561)
T ss_pred ------------eEEe-----cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccC
Confidence 1111 1333445688999999999887 4 789999987654433 55543 356788999
Q ss_pred CCCceEEEee------CCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCC
Q 001295 862 QDNNIIAIGM------DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS 916 (1106)
Q Consensus 862 ~d~~~la~g~------~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg 916 (1106)
|+.++.+.. .|..|.|||+...... ..+.+.|-|.|++.-+.+.+.
T Consensus 370 -d~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 370 -DGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred -CceEEEecCCCcccccCcceEEEEecCchhh--------hhhhccccCCcccceeeccCC
Confidence 888887764 4678999998754422 466788888887776666554
No 232
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=6e-11 Score=135.66 Aligned_cols=214 Identities=10% Similarity=0.062 Sum_probs=145.7
Q ss_pred eEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeC---CCcEEEEEeecceEEEEecCcccCeeEEEEecCCCE
Q 001295 832 KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNV 908 (1106)
Q Consensus 832 ~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~---dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~ 908 (1106)
.|.++|... ...+.+..+...+.+.+|+| |++.|+..+. +..|++||+.+++. ..+..+.+.+.+.+|+|||+.
T Consensus 183 ~l~~~d~dg-~~~~~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 183 RLAIMDQDG-ANVRYLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred EEEEECCCC-CCcEEEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCE
Confidence 688899854 44456666778899999999 8888877653 46899999988765 345556677888999999988
Q ss_pred EE-EEcCCCc--EEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeC----CeEEEEecCCceEeeec
Q 001295 909 LV-SSGADSQ--LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE----TQLAIFETTKLECVKQW 981 (1106)
Q Consensus 909 l~-s~s~Dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d----~~v~i~d~~~~~~~~~~ 981 (1106)
|+ +.+.++. |.+||+.+++.. .+ ..+. .......|+|||+.|+...+ ..|+++|+.+++.....
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~---~L---t~~~---~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt 330 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTT---RL---TDSP---AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRIS 330 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceE---Ec---cCCC---CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEee
Confidence 75 5555655 777788775431 11 1111 23567899999999988433 36889998876654432
Q ss_pred ccCCCCCCeeEEEECCCCCEEEEEEcC---CeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEE
Q 001295 982 VPRESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG 1058 (1106)
Q Consensus 982 ~~~~h~~~v~~l~~s~d~~~l~t~s~D---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~ 1058 (1106)
. +...+....|||||++|+..+.+ ..|.+||..++.. ..+. .+. .+. ...|+| ||+.|+..
T Consensus 331 ~---~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt------~~~---~~~--~p~~sp-DG~~i~~~ 394 (435)
T PRK05137 331 F---GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT------SGF---LVE--GPTWAP-NGRVIMFF 394 (435)
T ss_pred c---CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc------CCC---CCC--CCeECC-CCCEEEEE
Confidence 2 24456778999999999877654 3688899866543 2222 111 122 578999 68877655
Q ss_pred eCC-C-----cEEEEeecCCC
Q 001295 1059 LSD-G-----GVHVFEPLESE 1073 (1106)
Q Consensus 1059 ~~D-g-----~v~vW~~~~~~ 1073 (1106)
+.+ + .|++.++..++
T Consensus 395 ~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 395 RQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred EccCCCCCcceEEEEECCCCc
Confidence 443 2 46666765554
No 233
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.43 E-value=3.8e-10 Score=111.14 Aligned_cols=238 Identities=15% Similarity=0.214 Sum_probs=159.3
Q ss_pred CcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEE-E
Q 001295 352 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV-A 430 (1106)
Q Consensus 352 ~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las-~ 430 (1106)
....++|+.|..- +++|. |.-.+||+++.-+....+.+ ..-.-.+.-+-| -.++||- |
T Consensus 7 ~~lsvs~NQD~Sc-Fava~-~~Gfriyn~~P~ke~~~r~~-----------------~~~G~~~veMLf--R~N~laLVG 65 (346)
T KOG2111|consen 7 KTLSVSFNQDHSC-FAVAT-DTGFRIYNCDPFKESASRQF-----------------IDGGFKIVEMLF--RSNYLALVG 65 (346)
T ss_pred ceeEEEEccCCce-EEEEe-cCceEEEecCchhhhhhhcc-----------------ccCchhhhhHhh--hhceEEEec
Confidence 3445999999984 76665 45678999876333221111 000012222222 3345554 3
Q ss_pred eCC------CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCC-CCceeEEEeccC--
Q 001295 431 YSR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYIFEGHE-- 501 (1106)
Q Consensus 431 ~~d------~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~h~-- 501 (1106)
|.+ ..|.|||=....++. ++ ....+|.++.+.++- ++..- .+.|+||... +.+.++.+....
T Consensus 66 Gg~~pky~pNkviIWDD~k~~~i~---el-~f~~~I~~V~l~r~r----iVvvl-~~~I~VytF~~n~k~l~~~et~~NP 136 (346)
T KOG2111|consen 66 GGSRPKYPPNKVIIWDDLKERCII---EL-SFNSEIKAVKLRRDR----IVVVL-ENKIYVYTFPDNPKLLHVIETRSNP 136 (346)
T ss_pred CCCCCCCCCceEEEEecccCcEEE---EE-EeccceeeEEEcCCe----EEEEe-cCeEEEEEcCCChhheeeeecccCC
Confidence 322 469999954444443 33 246789999998763 33333 5789999987 566676665433
Q ss_pred CCeEEEeccccCCceEEEEEe-cCCeEEEEeCCCCCc--eeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCC
Q 001295 502 APVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 578 (1106)
Q Consensus 502 ~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~ 578 (1106)
....+++ +..+..+|+.-| .-|.|++-|+..... ...+..|...|.+++.+.+|.
T Consensus 137 kGlC~~~--~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-------------------- 194 (346)
T KOG2111|consen 137 KGLCSLC--PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT-------------------- 194 (346)
T ss_pred CceEeec--CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc--------------------
Confidence 3344444 444444555443 468999999876554 466677777666666666665
Q ss_pred CEEEEEECCCe-EEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 579 NRFLAAGDDFS-IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 579 ~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
.+++++..|+ |||||..+|+.+..+........|.+++|||++.+|+++++.|+++|+.++..
T Consensus 195 -~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 195 -LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred -EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 7899998887 79999999999999976555668999999999999999999999999998764
No 234
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=2.7e-11 Score=127.89 Aligned_cols=292 Identities=16% Similarity=0.177 Sum_probs=194.4
Q ss_pred cccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccC--CCeEEEeccccCCceEEEEEecCCeEEEEeC
Q 001295 455 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE--APVYSVCPHHKENIQFIFSTALDGKIKAWLY 532 (1106)
Q Consensus 455 ~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 532 (1106)
+|...-+.|..+|||++ ++++|-..-.|++||+..-.... ..|. ..|.-.-.+ .|-..++.-..|.+|-+...
T Consensus 49 e~p~ast~ik~s~DGqY-~lAtG~YKP~ikvydlanLSLKF--ERhlDae~V~feiLs--DD~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQY-LLATGTYKPQIKVYDLANLSLKF--ERHLDAEVVDFEILS--DDYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred CCccccceeEecCCCcE-EEEecccCCceEEEEcccceeee--eecccccceeEEEec--cchhhheEeecCceeeehhh
Confidence 47778899999999998 78899999999999987655432 2232 223222221 22223444444555544311
Q ss_pred CCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCC
Q 001295 533 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPA 612 (1106)
Q Consensus 533 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 612 (1106)
- +.-..+.+..-| ..++++.-..-|++++....|+-+|+..|+.+..+.... +.
T Consensus 124 ~------------G~hy~~RIP~~G------------RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~--~~ 177 (703)
T KOG2321|consen 124 Y------------GRHYRTRIPKFG------------RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDS--GE 177 (703)
T ss_pred c------------CeeeeeecCcCC------------ccccccCCCccEEEeecCcceEEEEcccccccccccccc--cc
Confidence 1 101111111111 123333333347777777889999999999998887663 47
Q ss_pred cCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccc
Q 001295 613 SPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVS 692 (1106)
Q Consensus 613 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1106)
+++|..++-..+|++|+.+|.+.+||.++. ..+..+..... +.
T Consensus 178 lN~v~in~~hgLla~Gt~~g~VEfwDpR~k-srv~~l~~~~~-v~----------------------------------- 220 (703)
T KOG2321|consen 178 LNVVSINEEHGLLACGTEDGVVEFWDPRDK-SRVGTLDAASS-VN----------------------------------- 220 (703)
T ss_pred ceeeeecCccceEEecccCceEEEecchhh-hhheeeecccc-cC-----------------------------------
Confidence 999999999999999999999999998776 22222221100 00
Q ss_pred cCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeec
Q 001295 693 IPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKW 772 (1106)
Q Consensus 693 ~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~ 772 (1106)
..+..-....|+++.|+.+|-.+++|+.+|.+.|||+
T Consensus 221 -------------------------------------------s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDL 257 (703)
T KOG2321|consen 221 -------------------------------------------SHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDL 257 (703)
T ss_pred -------------------------------------------CCccccccCcceEEEecCCceeEEeeccCCcEEEEEc
Confidence 0000013346899999999999999999999999998
Q ss_pred cccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC--CCEEEEEeCCeEEEEEcCCCceeeeecCC
Q 001295 773 QRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN--DSYVMSASGGKISLFNMMTFKTMATFMPP 850 (1106)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~--~~~l~~~sdg~i~vwd~~~~~~~~~~~~~ 850 (1106)
.... .+. .......-+|..+.|.+. +..+++.....++|||-.+|+....+..
T Consensus 258 Ra~~----------------------pl~--~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp- 312 (703)
T KOG2321|consen 258 RASK----------------------PLL--VKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP- 312 (703)
T ss_pred ccCC----------------------cee--ecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc-
Confidence 7422 111 112235667888888765 4566666668899999999998887774
Q ss_pred CCCeeEEEEecCCCceEEEeeCCCcEEEEEeec
Q 001295 851 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 883 (1106)
Q Consensus 851 ~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~ 883 (1106)
...+..+|+-| ++-++.+|-+++.+..|-+..
T Consensus 313 t~~lND~C~~p-~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 313 TSDLNDFCFVP-GSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred cCCcCceeeec-CCceEEEecCCCcceeEEccc
Confidence 44599999999 788888999998888776654
No 235
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=8.7e-11 Score=133.25 Aligned_cols=213 Identities=12% Similarity=0.125 Sum_probs=134.1
Q ss_pred cEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEe---CCCeEEEEEccCCceeeee
Q 001295 374 DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY---SRHIVQIYSYHGGDEVRQH 450 (1106)
Q Consensus 374 ~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~---~d~~v~iwd~~~~~~~~~~ 450 (1106)
.|.+||.+...... +..+...+...+|||||+.||..+ .+..|.+|++.+++... +
T Consensus 180 ~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l 238 (429)
T PRK03629 180 ELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-V 238 (429)
T ss_pred eEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-c
Confidence 68888887554322 345567899999999999999764 24579999999876432 2
Q ss_pred eeeccccCCeeEEEEcCCCCceEEEEecCCC--cEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEec-CCeE
Q 001295 451 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DGKI 527 (1106)
Q Consensus 451 ~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i 527 (1106)
..+. +.+...+|+|||+. ++++.+.++ .|++||+.+++... +..+...+....|+++ |+.|+..+. ++..
T Consensus 239 ~~~~---~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPD--G~~I~f~s~~~g~~ 311 (429)
T PRK03629 239 ASFP---RHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPD--SQNLAYTSDQAGRP 311 (429)
T ss_pred cCCC---CCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCC--CCEEEEEeCCCCCc
Confidence 2333 34567899999995 233334444 58999998887544 4444456677787654 466665554 4444
Q ss_pred EEE--eCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEEC---CCeEEEEECCCcceeE
Q 001295 528 KAW--LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DFSIKFWDMDSVQLLT 602 (1106)
Q Consensus 528 ~iw--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~ 602 (1106)
.+| |+..+.. ..+......... ..|+|+|++++..+. ...|++||+.+++..
T Consensus 312 ~Iy~~d~~~g~~-~~lt~~~~~~~~---------------------~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~- 368 (429)
T PRK03629 312 QVYKVNINGGAP-QRITWEGSQNQD---------------------ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ- 368 (429)
T ss_pred eEEEEECCCCCe-EEeecCCCCccC---------------------EEECCCCCEEEEEEccCCCceEEEEECCCCCeE-
Confidence 555 5443322 222222222223 445555556666443 246889999888644
Q ss_pred EEccCCCCCCcCeEEEccCCCEEEEEeCCCc---EEEEEcc
Q 001295 603 SIDADGGLPASPRIRFNKDGCLLAVSTNDNG---IKILATS 640 (1106)
Q Consensus 603 ~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~---i~iwd~~ 640 (1106)
.+... .......|+|||++|+.++.++. +.++++.
T Consensus 369 ~Lt~~---~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 369 VLTDT---FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred EeCCC---CCCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 33322 12456889999999999988765 5666663
No 236
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.41 E-value=8.3e-13 Score=135.62 Aligned_cols=260 Identities=12% Similarity=0.152 Sum_probs=186.3
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcc
Q 001295 572 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 651 (1106)
Q Consensus 572 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 651 (1106)
+.++.+|.+++.|+..|.|-.+|..++++...+.... .|.++.|-.+.+++|++-. ..++|||-..- .+..++
T Consensus 135 ~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E---tv~Dv~~LHneq~~AVAQK-~y~yvYD~~Gt--ElHClk- 207 (545)
T KOG1272|consen 135 LDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVME---TVRDVTFLHNEQFFAVAQK-KYVYVYDNNGT--ELHCLK- 207 (545)
T ss_pred eeecCCccEEEecCCccceeeeecccceeeeeeehhh---hhhhhhhhcchHHHHhhhh-ceEEEecCCCc--EEeehh-
Confidence 3444455589999999999999999999988886543 4889999999999888765 67888885322 111111
Q ss_pred cccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCcc
Q 001295 652 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 731 (1106)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~ 731 (1106)
T Consensus 208 -------------------------------------------------------------------------------- 207 (545)
T KOG1272|consen 208 -------------------------------------------------------------------------------- 207 (545)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCC
Q 001295 732 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE 811 (1106)
Q Consensus 732 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 811 (1106)
....|..+.|-|.--.|++++..|.++.-|++ +|.++...-. ..+
T Consensus 208 ----------~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS----------------------~GklVa~~~t---~~G 252 (545)
T KOG1272|consen 208 ----------RHIRVARLEFLPYHFLLVAASEAGFLKYQDVS----------------------TGKLVASIRT---GAG 252 (545)
T ss_pred ----------hcCchhhhcccchhheeeecccCCceEEEeec----------------------hhhhhHHHHc---cCC
Confidence 22456677788887778888888988877665 4444443222 355
Q ss_pred CeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEe
Q 001295 812 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL 890 (1106)
Q Consensus 812 ~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l 890 (1106)
.+..++-+|-+..+-+|. +|+|.+|.-...+.+..+..|.++|.+|++.+ +|+|+|+.+.|..++|||+.....+.++
T Consensus 253 ~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~ 331 (545)
T KOG1272|consen 253 RTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTY 331 (545)
T ss_pred ccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeecccccccee
Confidence 677788888888888887 89999999999999988999999999999999 9999999999999999999987755555
Q ss_pred cCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCc-c-cccceeecccCCCCCCCCCCceEEEcCCCcEEEEE
Q 001295 891 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW-E-KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 962 (1106)
Q Consensus 891 ~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~-~-~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 962 (1106)
.. .-....++||.-| +||.+ ....|.||.-... . ......+... ....|..+.|.|-...|-+|
T Consensus 332 ~t-p~~a~~ls~Sqkg-lLA~~-~G~~v~iw~d~~~~s~~~~~pYm~H~-----~~~~V~~l~FcP~EDvLGIG 397 (545)
T KOG1272|consen 332 RT-PHPASNLSLSQKG-LLALS-YGDHVQIWKDALKGSGHGETPYMNHR-----CGGPVEDLRFCPYEDVLGIG 397 (545)
T ss_pred ec-CCCcccccccccc-ceeee-cCCeeeeehhhhcCCCCCCcchhhhc-----cCcccccceeccHHHeeecc
Confidence 43 3456778898655 44444 3445999953221 1 1111112111 11367888888877666553
No 237
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=3.6e-11 Score=136.33 Aligned_cols=222 Identities=9% Similarity=0.016 Sum_probs=138.4
Q ss_pred eeeccCCCCcEEEEEecCCCeEEEEEec--cCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEc
Q 001295 344 TRTLNQGSSPMSMDFHPVQQTLLLVGTN--VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 421 (1106)
Q Consensus 344 ~~~~~h~~~v~~~~~sp~g~~llatg~~--dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 421 (1106)
.....+...+.+.+|||||++|+.+... +..|.+||+.+++... +....+.+..++||
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~~~~~~~~~~~S 251 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRHNGAPAFS 251 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccCCCCCcCCeEEC
Confidence 3444577789999999999975544322 3579999998876433 12222334568999
Q ss_pred cCCCEEEEE-eCCC--eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEec-CCCc--EEEEeCCCCceeE
Q 001295 422 PDGSLFGVA-YSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDKT--IKVWDATNGAKQY 495 (1106)
Q Consensus 422 pdg~~las~-~~d~--~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~-~d~~--i~iwd~~~~~~~~ 495 (1106)
|||++|+.. +.+| .|.+||+.+++..+ +..+...+....|+|||+. |+..+ .++. |.++|+.++.. .
T Consensus 252 PDG~~La~~~~~~g~~~I~~~d~~tg~~~~----lt~~~~~~~~~~wSPDG~~--I~f~s~~~g~~~Iy~~d~~~g~~-~ 324 (429)
T PRK03629 252 PDGSKLAFALSKTGSLNLYVMDLASGQIRQ----VTDGRSNNTEPTWFPDSQN--LAYTSDQAGRPQVYKVNINGGAP-Q 324 (429)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCCCCEEE----ccCCCCCcCceEECCCCCE--EEEEeCCCCCceEEEEECCCCCe-E
Confidence 999999865 3344 58999999876443 4445567889999999994 54444 3444 55557666654 3
Q ss_pred EEeccCCCeEEEeccccCCceEEEEEecC---CeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEE
Q 001295 496 IFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 572 (1106)
Q Consensus 496 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~ 572 (1106)
.+..+........|++ +|++|+..+.+ ..|.+||+.++... .+... ..... .
T Consensus 325 ~lt~~~~~~~~~~~Sp--DG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~---------------------p 379 (429)
T PRK03629 325 RITWEGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDET---------------------P 379 (429)
T ss_pred EeecCCCCccCEEECC--CCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCC---------------------c
Confidence 4444444455666654 55667665543 35788888765422 22111 11122 3
Q ss_pred EEcCCCCEEEEEECCC---eEEEEECCCcceeEEEccCCCCCCcCeEEEcc
Q 001295 573 QFDTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 620 (1106)
Q Consensus 573 ~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 620 (1106)
.|+|||..++.++.++ .++++++ +|.....+..+. ..+...+|+|
T Consensus 380 ~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~--~~~~~p~Wsp 427 (429)
T PRK03629 380 SIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATD--GQVKFPAWSP 427 (429)
T ss_pred eECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCC--CCcCCcccCC
Confidence 4556666777777654 3777887 455556665443 3577788887
No 238
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=7.4e-10 Score=119.80 Aligned_cols=476 Identities=13% Similarity=0.141 Sum_probs=273.9
Q ss_pred cCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCc---------------eeEEEeccCCCeEEEeccccCCceEEEEE
Q 001295 457 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA---------------KQYIFEGHEAPVYSVCPHHKENIQFIFST 521 (1106)
Q Consensus 457 ~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~---------------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 521 (1106)
.....|+.|+.... +++.||.||.++|-.+.+.. .-+++.||.+.|.-+.|+... +.|-+.
T Consensus 14 nvkL~c~~WNke~g--yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~--QKLTtS 89 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESG--YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN--QKLTTS 89 (1189)
T ss_pred CceEEEEEEcccCC--eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc--cccccc
Confidence 34678999999988 89999999999999776421 124678999999999986443 679999
Q ss_pred ecCCeEEEEeCCCCCceeEe--eCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcc
Q 001295 522 ALDGKIKAWLYDNLGSRVDY--EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 599 (1106)
Q Consensus 522 ~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 599 (1106)
..+|.|.+|-+-.+.-...+ ......|.+++|..||. .+....+||.|.+=.++..+
T Consensus 90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~---------------------kIcIvYeDGavIVGsvdGNR 148 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT---------------------KICIVYEDGAVIVGSVDGNR 148 (1189)
T ss_pred CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc---------------------EEEEEEccCCEEEEeeccce
Confidence 99999999977654322211 11223456666666665 45555555555544443222
Q ss_pred eeE-EEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhh
Q 001295 600 LLT-SIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAA 678 (1106)
Q Consensus 600 ~~~-~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1106)
... .+++ .....+.|++|.+.++.+-.+|.+.++|.......--.... .+.... .|+.
T Consensus 149 IwgKeLkg----~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c---~Vn~tg-----~~s~--------- 207 (1189)
T KOG2041|consen 149 IWGKELKG----QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDC---EVNGTG-----IFSN--------- 207 (1189)
T ss_pred ecchhcch----heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhce---EEeeee-----eecC---------
Confidence 110 1111 12446899999999999999999999998765322111110 000000 0110
Q ss_pred cccccccccccccccCCCCCC-ccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCce
Q 001295 679 TSAGLADRAASMVSIPGMNGD-VRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA 757 (1106)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 757 (1106)
....+....-+.+. ....|+...++++..+|.+.+..-.+...+..+. ..-.|..+.|+++|..
T Consensus 208 -------~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d--------tgm~~vgakWnh~G~v 272 (1189)
T KOG2041|consen 208 -------FPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD--------TGMKIVGAKWNHNGAV 272 (1189)
T ss_pred -------CCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe--------cccEeecceecCCCcE
Confidence 01111112222232 3344588889999999988887766544433322 2357889999999999
Q ss_pred EEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEE
Q 001295 758 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFN 837 (1106)
Q Consensus 758 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd 837 (1106)
|++++.+....- ...+..+.++.+. |..+.. ++. ....|++++|-..|-.++.+-|+.|.+=+
T Consensus 273 LAvcG~~~da~~-------------~~d~n~v~Fysp~-G~i~gt-lkv--pg~~It~lsWEg~gLriA~Avdsfiyfan 335 (1189)
T KOG2041|consen 273 LAVCGNDSDADE-------------PTDSNKVHFYSPY-GHIVGT-LKV--PGSCITGLSWEGTGLRIAIAVDSFIYFAN 335 (1189)
T ss_pred EEEccCcccccC-------------ccccceEEEeccc-hhheEE-Eec--CCceeeeeEEcCCceEEEEEecceEEEEe
Confidence 999887632110 0000112222221 211111 111 57789999999999999999999999888
Q ss_pred cCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCc
Q 001295 838 MMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ 917 (1106)
Q Consensus 838 ~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~ 917 (1106)
++-.-.-..+. ..|.-+ ++ .... -.-.|.+||..+.+..-+-..| ..+++|..+.-.|+.-..|+.
T Consensus 336 IRP~ykWgy~e---~TvVy~-y~--~~e~-----p~y~i~Fwdtk~nek~vK~V~~---~~~~a~~~ehCvL~~~~d~~~ 401 (1189)
T KOG2041|consen 336 IRPEYKWGYIE---ETVVYV-YQ--KEEL-----PQYGIMFWDTKTNEKTVKTVTH---FENMAFYREHCVLINRQDDGV 401 (1189)
T ss_pred ecccceEEEee---eEEEEE-Ec--cCCC-----cceEEEEEecccChhhhhhhcc---eeehheecccEEEEeccccCC
Confidence 76422211111 111111 11 1000 1124788998876532222222 456788888888888888888
Q ss_pred EEEEeC-CCcccccceeecccCCCCCC--CCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEe----------------
Q 001295 918 LCVWSS-DGWEKQKNRFLQIPTGRTPT--AQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECV---------------- 978 (1106)
Q Consensus 918 i~vwd~-~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~---------------- 978 (1106)
+.-++. ++....-...+.-.-|.+.. ...|.-....-++.+++.++...+.+|.....+..
T Consensus 402 i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~ 481 (1189)
T KOG2041|consen 402 IPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHG 481 (1189)
T ss_pred CcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccC
Confidence 776632 11110000011111111100 01233333445677777777888888875332110
Q ss_pred ---------eecc-----cCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295 979 ---------KQWV-----PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus 979 ---------~~~~-----~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
+.+. ..+..++|.+++.| .++|..+-..|.|.=+.+.+..+.....
T Consensus 482 Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y~ 541 (1189)
T KOG2041|consen 482 DDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSYP 541 (1189)
T ss_pred CCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeeccc
Confidence 0000 11346678888875 5688888899999999999887766543
No 239
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.41 E-value=4e-10 Score=124.17 Aligned_cols=280 Identities=15% Similarity=0.175 Sum_probs=174.9
Q ss_pred CceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeec----CceEEEeeccccccCCCCccccccCccc
Q 001295 716 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS----NAIHLLWKWQRTERNSSGKATASVAPQL 791 (1106)
Q Consensus 716 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 791 (1106)
+.|.+|+++.... .+..+.. ........-++++|++++|.++.. ++.|..|++...
T Consensus 13 ~gI~~~~~d~~~g--~l~~~~~--~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~---------------- 72 (345)
T PF10282_consen 13 GGIYVFRFDEETG--TLTLVQT--VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPD---------------- 72 (345)
T ss_dssp TEEEEEEEETTTT--EEEEEEE--EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETT----------------
T ss_pred CcEEEEEEcCCCC--CceEeee--ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCC----------------
Confidence 6888888843221 2221111 013345567889999999988877 468888876532
Q ss_pred cCCCCCCcccc-ccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCC-Cceeee---e----------cCCCCCe
Q 001295 792 WQPPSGIMMTN-DVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMAT---F----------MPPPPAA 854 (1106)
Q Consensus 792 w~~~~~~~~~~-~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~-~~~~~~---~----------~~~~~~v 854 (1106)
+|.+... ... ........++++|++++|+++. +|.|.++++.. +..... + .......
T Consensus 73 ----~g~L~~~~~~~--~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~ 146 (345)
T PF10282_consen 73 ----TGTLTLLNSVP--SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHP 146 (345)
T ss_dssp ----TTEEEEEEEEE--ESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCE
T ss_pred ----cceeEEeeeec--cCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccc
Confidence 1211110 000 0345567899999999999997 79999999986 333222 1 1123457
Q ss_pred eEEEEecCCCceEEEee-CCCcEEEEEeecce--EE--EEec-CcccCeeEEEEecCCCEEEEEc-CCCcEEEEeCC--C
Q 001295 855 TFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDE--VK--SKLK-GHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSD--G 925 (1106)
Q Consensus 855 ~~l~~s~~d~~~la~g~-~dg~v~iwd~~~~~--~~--~~l~-~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~--~ 925 (1106)
.++.|+| +++++++.. ....|++|++.... +. ..+. .....-..++|+||++++.... .+++|.++++. +
T Consensus 147 H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~ 225 (345)
T PF10282_consen 147 HQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSD 225 (345)
T ss_dssp EEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred eeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccC
Confidence 8999999 777766653 34589999997654 32 2222 2334568899999999886554 57789999988 4
Q ss_pred cccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE--eCCeEEEEecC--Cc--eEeeecccCCCCCCeeEEEECCCC
Q 001295 926 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETT--KL--ECVKQWVPRESSAPITHATFSCDS 999 (1106)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~d~~v~i~d~~--~~--~~~~~~~~~~h~~~v~~l~~s~d~ 999 (1106)
+.......+...............++++|||++|.++ ..+.|.+|++. ++ +.+..+.. .......++++|||
T Consensus 226 g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~--~G~~Pr~~~~s~~g 303 (345)
T PF10282_consen 226 GSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT--GGKFPRHFAFSPDG 303 (345)
T ss_dssp TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE--SSSSEEEEEE-TTS
T ss_pred CceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC--CCCCccEEEEeCCC
Confidence 4332222233222211111256789999999999995 56789999993 23 33444432 24458999999999
Q ss_pred CEEEEEE-cCCeEEEEEc--CCceeEEe
Q 001295 1000 QLVYACF-LDATVCVFSA--ANLKLRCR 1024 (1106)
Q Consensus 1000 ~~l~t~s-~Dg~i~vwd~--~~~~~~~~ 1024 (1106)
++|++++ .++.|.+|++ ++|.+...
T Consensus 304 ~~l~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 304 RYLYVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp SEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred CEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence 9998887 4568999876 57776543
No 240
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=1.4e-09 Score=110.21 Aligned_cols=282 Identities=9% Similarity=0.086 Sum_probs=184.7
Q ss_pred CCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecC---ceEEEeeccccccCCCCccccccCccc
Q 001295 715 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN---AIHLLWKWQRTERNSSGKATASVAPQL 791 (1106)
Q Consensus 715 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~ 791 (1106)
+..|.+|++......-....+ .......+-++++|+.+.|.++..+ |.+.-|.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~----v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~i------------------- 71 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQL----VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRI------------------- 71 (346)
T ss_pred CCceEEEEEeCcccccchhhh----ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEE-------------------
Confidence 578999999843322111111 2256778899999999988877664 56666654
Q ss_pred cCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCC-Cceeee--ecCCCCC----------eeE
Q 001295 792 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMAT--FMPPPPA----------ATF 856 (1106)
Q Consensus 792 w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~-~~~~~~--~~~~~~~----------v~~ 856 (1106)
|..+|.+....... ....+.+.++++++|++++++. .|.|.++-+.. |..... ...|.+. +..
T Consensus 72 -D~~~G~Lt~ln~~~-~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 72 -DPDDGRLTFLNRQT-LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS 149 (346)
T ss_pred -cCCCCeEEEeeccc-cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence 33344432211110 1233448899999999999998 58999999965 433222 1223333 788
Q ss_pred EEEecCCCceEEEeeC-CCcEEEEEeecceEEEEec---CcccCeeEEEEecCCCEEEEEcC-CCcEEEEeCCC--cccc
Q 001295 857 LAFHPQDNNIIAIGMD-DSSIQIYNVRVDEVKSKLK---GHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDG--WEKQ 929 (1106)
Q Consensus 857 l~~s~~d~~~la~g~~-dg~v~iwd~~~~~~~~~l~---~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~--~~~~ 929 (1106)
..|.| ++++|++.+- --.|.+|++..|++...-. .-...-..|+|+|++++.....+ +++|.+|..+. ++..
T Consensus 150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence 99999 8888877652 2379999999876542211 12344578999999998876664 88999999988 3333
Q ss_pred cceeecccCCCCCCCCCCceEEEcCCCcEEEEEeC--CeEEEEecCC--ceEeeecccCCCCCCeeEEEECCCCCEEEEE
Q 001295 930 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE--TQLAIFETTK--LECVKQWVPRESSAPITHATFSCDSQLVYAC 1005 (1106)
Q Consensus 930 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d--~~v~i~d~~~--~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~ 1005 (1106)
..+.+...............+..++||++|.++.. ..|.+|.+.. ++....-....+........|+++|++|+++
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence 33334444433444456788999999999999744 4688887644 3322221112345557889999999999988
Q ss_pred EcCC-eEEEEEc--CCceeE
Q 001295 1006 FLDA-TVCVFSA--ANLKLR 1022 (1106)
Q Consensus 1006 s~Dg-~i~vwd~--~~~~~~ 1022 (1106)
.+|+ .|.+|.+ .+|++-
T Consensus 309 ~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 309 NQKSDNITVFERDKETGRLT 328 (346)
T ss_pred ccCCCcEEEEEEcCCCceEE
Confidence 8764 5888866 455544
No 241
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.1e-10 Score=133.45 Aligned_cols=216 Identities=12% Similarity=0.062 Sum_probs=140.2
Q ss_pred CcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeC---CCeEEEEEccCCceeee
Q 001295 373 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS---RHIVQIYSYHGGDEVRQ 449 (1106)
Q Consensus 373 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---d~~v~iwd~~~~~~~~~ 449 (1106)
..|.+||........ +..|...+.+.+|||||+.|+..+. +..|.+||+.+++...
T Consensus 182 ~~l~~~d~dg~~~~~--------------------lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~- 240 (435)
T PRK05137 182 KRLAIMDQDGANVRY--------------------LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL- 240 (435)
T ss_pred eEEEEECCCCCCcEE--------------------EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-
Confidence 368888876543322 4677889999999999999998763 4689999999886532
Q ss_pred eeeeccccCCeeEEEEcCCCCceEEEEecCCCc--EEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEec-CC-
Q 001295 450 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG- 525 (1106)
Q Consensus 450 ~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg- 525 (1106)
+..+.+.+...+|+|||+. ++++.+.++. |++||+.++.. ..+..+........|+++ |+.|+..+. +|
T Consensus 241 ---l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spD--G~~i~f~s~~~g~ 313 (435)
T PRK05137 241 ---VGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPD--GSQIVFESDRSGS 313 (435)
T ss_pred ---eecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCC--CCEEEEEECCCCC
Confidence 4456677889999999995 3456665555 77789887764 456656666667777654 466665553 33
Q ss_pred -eEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECC---CeEEEEECCCccee
Q 001295 526 -KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLL 601 (1106)
Q Consensus 526 -~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~ 601 (1106)
.|.+||+..... ..+......+... .|+|+|++++....+ ..|.+||+.++..
T Consensus 314 ~~Iy~~d~~g~~~-~~lt~~~~~~~~~---------------------~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~- 370 (435)
T PRK05137 314 PQLYVMNADGSNP-RRISFGGGRYSTP---------------------VWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE- 370 (435)
T ss_pred CeEEEEECCCCCe-EEeecCCCcccCe---------------------EECCCCCEEEEEEcCCCceEEEEEECCCCce-
Confidence 577777654332 2222222223333 455555566654432 4688899865543
Q ss_pred EEEccCCCCCCcCeEEEccCCCEEEEEeCC------CcEEEEEccCC
Q 001295 602 TSIDADGGLPASPRIRFNKDGCLLAVSTND------NGIKILATSDG 642 (1106)
Q Consensus 602 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d------g~i~iwd~~~~ 642 (1106)
..+... ..+....|+|||+.|+..+.+ ..+.++|+..+
T Consensus 371 ~~lt~~---~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 371 RILTSG---FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred EeccCC---CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 333321 136778999999998876553 24677776554
No 242
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.40 E-value=4.4e-11 Score=118.45 Aligned_cols=364 Identities=15% Similarity=0.170 Sum_probs=215.1
Q ss_pred cCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC-Cc----eeEEEeccC------------CCeEEEeccccCCceEEE
Q 001295 457 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GA----KQYIFEGHE------------APVYSVCPHHKENIQFIF 519 (1106)
Q Consensus 457 ~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~----~~~~~~~h~------------~~v~~~~~~~~~~~~~l~ 519 (1106)
..-|.++.|...|. +|++|..+|.|.++.-.. .+ ....++.|. ..|..+.|....+...++
T Consensus 25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 45789999999999 899999999999996432 21 233455454 357788888888888999
Q ss_pred EEecCCeEEEEeCCCCCceeE-e----eCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEE
Q 001295 520 STALDGKIKAWLYDNLGSRVD-Y----EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWD 594 (1106)
Q Consensus 520 s~~~dg~i~iwd~~~~~~~~~-~----~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 594 (1106)
..+.|.+|++|.+........ + ......++++.. .+.+..|-.+.
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~---------------------------p~~~~~~~~ve--- 152 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL---------------------------PVEGRHDLEVE--- 152 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeec---------------------------eeeccccceee---
Confidence 999999999998876443320 0 001111111111 01111111110
Q ss_pred CCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhH
Q 001295 595 MDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAA 674 (1106)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1106)
..+.+. -.+.|.-.|++++++.|+..++++. |=.|.+|++.-..+.
T Consensus 153 ---a~prRv-~aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~s----------------------------- 198 (433)
T KOG1354|consen 153 ---ASPRRV-YANAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQS----------------------------- 198 (433)
T ss_pred ---eeeeee-ccccceeEeeeeeecCccceEeecc-ceeeeeccccccCCc-----------------------------
Confidence 011222 2344555799999999999988765 578999987532111
Q ss_pred hhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCC
Q 001295 675 AAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS 754 (1106)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 754 (1106)
..+-|+.. ... ..-..-|++..|+|.
T Consensus 199 -------------------------------------------FnIVDIKP----~nm-------EeLteVITsaEFhp~ 224 (433)
T KOG1354|consen 199 -------------------------------------------FNIVDIKP----ANM-------EELTEVITSAEFHPH 224 (433)
T ss_pred -------------------------------------------eeEEEccc----cCH-------HHHHHHHhhhccCHh
Confidence 11122211 000 012345778888885
Q ss_pred -CceEEEeecCceEEEeeccccccCCCCccccccCccccCC-CCCCccccccCCCCCCCCeeEEEEecCCCEEEEEeCCe
Q 001295 755 -GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQP-PSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK 832 (1106)
Q Consensus 755 -~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~ 832 (1106)
.+.++-+++.|+|++.|++..... ....+++.. ..+.-... +. +--..|..+.|+++|+++++-+--+
T Consensus 225 ~cn~f~YSSSKGtIrLcDmR~~aLC-------d~hsKlfEepedp~~rsf-fs--eiIsSISDvKFs~sGryilsRDylt 294 (433)
T KOG1354|consen 225 HCNVFVYSSSKGTIRLCDMRQSALC-------DAHSKLFEEPEDPSSRSF-FS--EIISSISDVKFSHSGRYILSRDYLT 294 (433)
T ss_pred HccEEEEecCCCcEEEeechhhhhh-------cchhhhhccccCCcchhh-HH--HHhhhhhceEEccCCcEEEEeccce
Confidence 455666777899999998743211 111112211 11111100 11 1235688899999999999998899
Q ss_pred EEEEEc-CCCceeeeecCCC------------CC---eeEEEEecCCCceEEEeeCCCcEEEEEeecceE-EEEecCccc
Q 001295 833 ISLFNM-MTFKTMATFMPPP------------PA---ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-KSKLKGHSK 895 (1106)
Q Consensus 833 i~vwd~-~~~~~~~~~~~~~------------~~---v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~-~~~l~~h~~ 895 (1106)
|++||+ ...+.+.++.-|. .. -..++|+. ++.++++|+....+++|++..|.. -.++.....
T Consensus 295 vk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~ 373 (433)
T KOG1354|consen 295 VKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRK 373 (433)
T ss_pred eEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecCCCCcceeeccccccc
Confidence 999999 4556666665542 22 24688988 888999999999999999766542 223332222
Q ss_pred C--eeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEE
Q 001295 896 R--ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIF 970 (1106)
Q Consensus 896 ~--V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~ 970 (1106)
. ...+ ..-+.+.+++......+|-. . +.. ...+...+|+|....+|++..+.+.+|
T Consensus 374 ~~~~~~~---~k~~~V~~~g~r~~~~~~vd-~--------ldf-------~kkilh~aWhp~en~ia~aatnnlyif 431 (433)
T KOG1354|consen 374 NMKPRKV---LKLRLVSSSGKRKRDEISVD-A--------LDF-------RKKILHTAWHPKENSIAVAATNNLYIF 431 (433)
T ss_pred CCccccc---ccceeeecCCCccccccccc-h--------hhh-------hhHHHhhccCCccceeeeeecCceEEe
Confidence 2 1111 11233444444433222210 0 100 024577899999999999877777776
No 243
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.40 E-value=7.8e-09 Score=107.04 Aligned_cols=171 Identities=15% Similarity=0.166 Sum_probs=135.3
Q ss_pred CCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCC-cEEEEEeecceEEEEecCcccCeeE
Q 001295 821 NDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-SIQIYNVRVDEVKSKLKGHSKRITG 899 (1106)
Q Consensus 821 ~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg-~v~iwd~~~~~~~~~l~~h~~~V~~ 899 (1106)
+|.+++..+.|+..|.+...+-.++. ++.+.|.-..+.. +++-++.|..|| .+-|||..+++. ..+...-+.|.+
T Consensus 331 ~Gd~ia~VSRGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~a 406 (668)
T COG4946 331 NGDYIALVSRGKAFIMRPWDGYSIQV--GKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEA 406 (668)
T ss_pred CCcEEEEEecCcEEEECCCCCeeEEc--CCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceE-EEeeCCccceEE
Confidence 78899999999988888776654433 4667798888888 677889999999 999999988764 556667788999
Q ss_pred EEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eC----CeEEEEecCC
Q 001295 900 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE----TQLAIFETTK 974 (1106)
Q Consensus 900 l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d----~~v~i~d~~~ 974 (1106)
|..++||++++.+.....|.+.|++++... .+...+ .+-|+.+.|+|+++++|.+ -+ ..|++||+.+
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngnv~---~idkS~-----~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGNVR---LIDKSE-----YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCCee---Eecccc-----cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 999999999999999999999999997642 222111 1478999999999999986 33 4699999999
Q ss_pred ceEeeecccCCCCCCeeEEEECCCCCEEEEEE
Q 001295 975 LECVKQWVPRESSAPITHATFSCDSQLVYACF 1006 (1106)
Q Consensus 975 ~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s 1006 (1106)
++........+ .=.+-+|.||+++|..-+
T Consensus 479 ~Kiy~vTT~ta---~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 479 GKIYDVTTPTA---YDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CeEEEecCCcc---cccCcccCCCCcEEEEEe
Confidence 98877655433 345678999999987655
No 244
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=4.8e-10 Score=118.95 Aligned_cols=154 Identities=10% Similarity=0.121 Sum_probs=102.0
Q ss_pred CCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEE
Q 001295 350 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 429 (1106)
Q Consensus 350 ~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 429 (1106)
...++..++|++|+ ++|.+ .+..|.|++..+++.+... ... .++++.|||.|.+|.+
T Consensus 34 ~~~~~v~~~S~~G~-lfA~~-~~~~v~i~~~~~~~~~lt~--------------------~~~-~~~~L~fSP~g~yL~T 90 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGR-LFAYS-DNQVVKVFEIATLKVVLCV--------------------ELK-KTYDLLFSPKGNYLLT 90 (566)
T ss_pred CCcceeEEEcCCCc-EEEEE-cCCeEEEEEccCCcEEEEe--------------------ccc-eeeeeeeccccccccc
Confidence 34578899999999 47664 4688999999888644321 112 6899999999999986
Q ss_pred E-----eCC-----CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEec
Q 001295 430 A-----YSR-----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 499 (1106)
Q Consensus 430 ~-----~~d-----~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 499 (1106)
- ..+ ..+.+|+++++.... .+......-++..|+.|.. ++.--..+.+++|++.+-+.+. -.-
T Consensus 91 ~e~~~i~~~~~~~~pn~~v~~vet~~~~s---~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~-~kl 163 (566)
T KOG2315|consen 91 WEPWAIYGPKNASNPNVLVYNVETGVQRS---QIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQ-HKL 163 (566)
T ss_pred ccccccccCCCCCCCceeeeeeccceehh---heehhhhcCcccccccchh---hhhhhhcceEEEEecCCcccee-eee
Confidence 2 222 347799999944322 1222122226899999986 4444445779999987643322 122
Q ss_pred cCCCeEEEeccccCCceEEEE-----EecCCeEEEEeCC
Q 001295 500 HEAPVYSVCPHHKENIQFIFS-----TALDGKIKAWLYD 533 (1106)
Q Consensus 500 h~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~iwd~~ 533 (1106)
|...|+.+.+++.+.-..+++ .|.-+.|++|.+.
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~ 202 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYP 202 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccc
Confidence 677888888887754444443 3556789999776
No 245
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=4.3e-11 Score=136.59 Aligned_cols=222 Identities=12% Similarity=0.078 Sum_probs=137.3
Q ss_pred eeeeccCCCCcEEEEEecCCCeEEEEEec---cCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEE
Q 001295 343 VTRTLNQGSSPMSMDFHPVQQTLLLVGTN---VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 419 (1106)
Q Consensus 343 ~~~~~~h~~~v~~~~~sp~g~~llatg~~---dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 419 (1106)
...+..|...+.+.+|||||++ |+..+. +..|.+||+.+++... +..+.+...+.+
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~-la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g~~~~~~ 254 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKK-LAYVSFERGRSAIYVQDLATGQREL--------------------VASFRGINGAPS 254 (433)
T ss_pred ceEeecCCCccccccCCCCCCE-EEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCCCccCce
Confidence 3444567788999999999997 554443 2469999998876543 223334456789
Q ss_pred EccCCCEEEE-EeCCC--eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEec-CCCc--EEEEeCCCCce
Q 001295 420 WSPDGSLFGV-AYSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDKT--IKVWDATNGAK 493 (1106)
Q Consensus 420 ~spdg~~las-~~~d~--~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~-~d~~--i~iwd~~~~~~ 493 (1106)
|||||+.|+. .+.++ .|.+||+.+++... +..|.......+|+|||+. ++.++ .++. |+++|+.+++.
T Consensus 255 ~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~----lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~~dl~~g~~ 328 (433)
T PRK04922 255 FSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR----LTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYRVAASGGSA 328 (433)
T ss_pred ECCCCCEEEEEEeCCCCceEEEEECCCCCeEE----CccCCCCccceEECCCCCE--EEEEECCCCCceEEEEECCCCCe
Confidence 9999998864 44554 59999999876432 5556666678999999994 44433 4444 67777777664
Q ss_pred eEEEeccCCCeEEEeccccCCceEEEEEecCC---eEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeecccee
Q 001295 494 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDG---KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 570 (1106)
Q Consensus 494 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~ 570 (1106)
. .+..+.......+|++ +|+.|+..+.++ .|.+||+.++... .+. +........|+
T Consensus 329 ~-~lt~~g~~~~~~~~Sp--DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~s---------------- 387 (433)
T PRK04922 329 E-RLTFQGNYNARASVSP--DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFA---------------- 387 (433)
T ss_pred E-EeecCCCCccCEEECC--CCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceEC----------------
Confidence 3 3332333444567755 456676654432 6899998765433 222 11122333444
Q ss_pred EEEEcCCCCEEEEEEC---CCeEEEEECCCcceeEEEccCCCCCCcCeEEEcc
Q 001295 571 VVQFDTTKNRFLAAGD---DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 620 (1106)
Q Consensus 571 ~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 620 (1106)
|+|++++..+. .+.|.++++.. .....+..+. ..+...+|+|
T Consensus 388 -----pdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~--g~~~~p~wsp 432 (433)
T PRK04922 388 -----PNGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSAD--GEVREPAWSP 432 (433)
T ss_pred -----CCCCEEEEEEecCCceEEEEEECCC-CceEEcccCC--CCCCCCccCC
Confidence 44455555443 35688888854 4445454332 2466677776
No 246
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.39 E-value=2.8e-07 Score=112.44 Aligned_cols=471 Identities=12% Similarity=0.133 Sum_probs=254.5
Q ss_pred CCCcCeEEEEEccCCCEEEEEeCCCeEEEE----EccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEE
Q 001295 410 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIY----SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 485 (1106)
Q Consensus 410 ~h~~~V~~l~~spdg~~las~~~d~~v~iw----d~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~i 485 (1106)
...+.|.++.|-++...|+.+..+|.|.+. +..+.. +.. ...-...|.+++||||+. +|+....++++.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~---VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~ 146 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEI---VGSVDSGILAASWSPDEE--LLALVTGEGNLLL 146 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEE---EEEEcCcEEEEEECCCcC--EEEEEeCCCEEEE
Confidence 345789999999999999999999999999 544433 221 223457899999999999 5555555677766
Q ss_pred EeCCCCceeE------------------------EEec------------------------cCCCeEEEeccccCCceE
Q 001295 486 WDATNGAKQY------------------------IFEG------------------------HEAPVYSVCPHHKENIQF 517 (1106)
Q Consensus 486 wd~~~~~~~~------------------------~~~~------------------------h~~~v~~~~~~~~~~~~~ 517 (1106)
-+ ++...+. .|.| +...-..++| .+||.+
T Consensus 147 mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISW--RGDG~y 223 (928)
T PF04762_consen 147 MT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISW--RGDGEY 223 (928)
T ss_pred Ee-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEE--CCCCcE
Confidence 53 2211111 1111 1111223344 677788
Q ss_pred EEEEec---C---CeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEEC---CC
Q 001295 518 IFSTAL---D---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DF 588 (1106)
Q Consensus 518 l~s~~~---d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~ 588 (1106)
+++.+. . ..+|+|+-+ +.....-. ++. +--..++|.|.|+++++... ..
T Consensus 224 FAVss~~~~~~~~R~iRVy~Re-G~L~stSE----~v~-----------------gLe~~l~WrPsG~lIA~~q~~~~~~ 281 (928)
T PF04762_consen 224 FAVSSVEPETGSRRVIRVYSRE-GELQSTSE----PVD-----------------GLEGALSWRPSGNLIASSQRLPDRH 281 (928)
T ss_pred EEEEEEEcCCCceeEEEEECCC-ceEEeccc----cCC-----------------CccCCccCCCCCCEEEEEEEcCCCc
Confidence 888775 2 468888654 11111111 111 11234567777777777543 45
Q ss_pred eEEEEECCCcceeEEEccC--CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCC
Q 001295 589 SIKFWDMDSVQLLTSIDAD--GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 666 (1106)
Q Consensus 589 ~i~iwd~~~~~~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (1106)
.|.+|.- +|-.-..|... .....|..+.|++|+..||+...|. |.+|-..+-.-.++..-
T Consensus 282 ~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei---------------- 343 (928)
T PF04762_consen 282 DVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEI---------------- 343 (928)
T ss_pred EEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEE----------------
Confidence 6777774 44333333322 2234688999999999999988654 99997765521111100
Q ss_pred cCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccce
Q 001295 667 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 746 (1106)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i 746 (1106)
.+ .....+
T Consensus 344 ---------------------------------------------------------------------~~---~~~~~~ 351 (928)
T PF04762_consen 344 ---------------------------------------------------------------------RF---SSSESV 351 (928)
T ss_pred ---------------------------------------------------------------------Ec---cCCCCC
Confidence 00 011222
Q ss_pred EEEEEcCC-CceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEec-CCCE
Q 001295 747 SRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSY 824 (1106)
Q Consensus 747 ~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~ 824 (1106)
..+.|+|. ...|...+.+|.+..+++. |+...+.. .+| |...
T Consensus 352 ~~~~Wdpe~p~~L~v~t~~g~~~~~~~~------------------~~v~~s~~------------------~~~~D~g~ 395 (928)
T PF04762_consen 352 NFVKWDPEKPLRLHVLTSNGQYEIYDFA------------------WDVSRSPG------------------SSPNDNGT 395 (928)
T ss_pred CceEECCCCCCEEEEEecCCcEEEEEEE------------------EEEEecCC------------------CCccCceE
Confidence 33666664 3346666665666665543 11111100 011 2223
Q ss_pred EEEEeCCeEEEEEcCCCcee-----eeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceE--------EEEec
Q 001295 825 VMSASGGKISLFNMMTFKTM-----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV--------KSKLK 891 (1106)
Q Consensus 825 l~~~sdg~i~vwd~~~~~~~-----~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~--------~~~l~ 891 (1106)
+++..+.++.+-.++..-.. ..+. -...|.+++|++ ++..+|+-..||.|.+|....... ...+.
T Consensus 396 vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 473 (928)
T PF04762_consen 396 VAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSP-SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSIS 473 (928)
T ss_pred EEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeC-CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcc
Confidence 33444456777776643321 2233 346799999999 666688889999999998643211 11111
Q ss_pred ----------CcccCeeEEEEecCCCEEEEEcCC---CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcE
Q 001295 892 ----------GHSKRITGLAFSHALNVLVSSGAD---SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 958 (1106)
Q Consensus 892 ----------~h~~~V~~l~~s~d~~~l~s~s~D---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~ 958 (1106)
.-...+..++|..+...++....+ ..+.++++...+... ........ ...+..+...++...
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~ 548 (928)
T PF04762_consen 474 LDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSA-SVESSTEV----DGVVLIISSSPDSGS 548 (928)
T ss_pred cccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCce-eEEEEecc----CceEEEEeeCCCCcE
Confidence 123457788898887776666554 568888874432111 11111111 123344444555543
Q ss_pred EEE-EeCCeEEEEecCCceEe-eecccCCCCCCeeEEEECCCCC---EEEEEEcCCeEEEEEcCCceeEEeeCCCcccCC
Q 001295 959 FLV-VHETQLAIFETTKLECV-KQWVPRESSAPITHATFSCDSQ---LVYACFLDATVCVFSAANLKLRCRINPSAYLPA 1033 (1106)
Q Consensus 959 l~~-~~d~~v~i~d~~~~~~~-~~~~~~~h~~~v~~l~~s~d~~---~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~ 1033 (1106)
++. ..+|.+..++....... ..+. . .-+-..++...+.. .++.-+..|.+++ ++..++.
T Consensus 549 ~~~q~~~G~v~~~~~~~~~~~~~~fp--~-~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la~--------- 612 (928)
T PF04762_consen 549 LYIQTNDGKVFQLSSDGELSQIVKFP--Q-PCPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLAS--------- 612 (928)
T ss_pred EEEEECCCEEEEeecCCCccccccCC--C-CCcEEEEEEECCccceeEEEEECCCCEEEE----CCEEEec---------
Confidence 343 67888886665543221 1221 1 11222222222322 3443344455554 3344421
Q ss_pred CCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeec
Q 001295 1034 GVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1070 (1106)
Q Consensus 1034 ~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~ 1070 (1106)
. +. ++..+ +.+|+-......+++.++.
T Consensus 613 ~-----~t--SF~v~---~~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 613 N-----CT--SFAVT---DSFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred C-----Cc--eEEEE---cCEEEEEecCceEEEEECc
Confidence 1 33 44444 3455555557778999888
No 247
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=6e-11 Score=119.93 Aligned_cols=255 Identities=12% Similarity=0.092 Sum_probs=176.7
Q ss_pred cCCCCcEEEEEecCCCeEEEEEe-ccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCE
Q 001295 348 NQGSSPMSMDFHPVQQTLLLVGT-NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 426 (1106)
Q Consensus 348 ~h~~~v~~~~~sp~g~~llatg~-~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 426 (1106)
...+.|..++|--+++.=+..+. .|..+............. +||.. .......+|..++.. | ..
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~---------~~~l~~~~I~gl~~~-d-g~ 117 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAK---------TVSLGTKSIKGLKLA-D-GT 117 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccc----ccccc---------ccccccccccchhhc-C-CE
Confidence 35578888888877764344444 555666666655444321 12221 234455677777664 3 36
Q ss_pred EEEEeCCCeEEEEEccCCcee-eeeeeeccccCCeeEEEEcCCCCceEEEEecCC--CcEEEEeCCCCceeEEEec----
Q 001295 427 FGVAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD--KTIKVWDATNGAKQYIFEG---- 499 (1106)
Q Consensus 427 las~~~d~~v~iwd~~~~~~~-~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~---- 499 (1106)
|++|-.+|.+.+|..+.+..- .....+..+ ..+..+.-++.... ++++||.. ..++|||++..+.+.+-+.
T Consensus 118 Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD 195 (412)
T KOG3881|consen 118 LITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPND 195 (412)
T ss_pred EEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCc
Confidence 777888999999999854311 011123323 56777887777775 67779998 8899999998866554332
Q ss_pred ---cCC--CeEEEeccccCCceEEEEEecCCeEEEEeCCCCCce-eEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEE
Q 001295 500 ---HEA--PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 573 (1106)
Q Consensus 500 ---h~~--~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 573 (1106)
-.- .++++.|.+..+...|++++.-+.+++||.+.+..+ ..+..... .+.++.
T Consensus 196 ~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~---------------------~is~~~ 254 (412)
T KOG3881|consen 196 RLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLEN---------------------PISSTG 254 (412)
T ss_pred cccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccC---------------------cceeee
Confidence 112 345666665544578999999999999999865433 23433334 445555
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCcceeEE-EccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 574 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTS-IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 574 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
..|+++++++|..-+.+..||++.++.... +.+. .+.++++..+|.++++++++-|..+||+|+.+.
T Consensus 255 l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~--tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 255 LTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI--TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred ecCCCcEEEEecccchhheecccCceeeccccCCc--cCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 566666899999999999999999988877 5544 457999999999999999999999999999985
No 248
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=8.5e-11 Score=134.19 Aligned_cols=215 Identities=13% Similarity=0.152 Sum_probs=137.1
Q ss_pred CcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCC---CeEEEEEccCCceeee
Q 001295 373 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQ 449 (1106)
Q Consensus 373 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---~~v~iwd~~~~~~~~~ 449 (1106)
..|.+||........ +..|...+.+.+|||||+.|+.++.+ ..|.+||+.+++...
T Consensus 184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~- 242 (433)
T PRK04922 184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL- 242 (433)
T ss_pred EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence 468899986443321 45667789999999999999988643 469999999876532
Q ss_pred eeeeccccCCeeEEEEcCCCCceEEEEecCCC--cEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEe-cCCe
Q 001295 450 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGK 526 (1106)
Q Consensus 450 ~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~ 526 (1106)
+..+.+...+.+|+|||+. ++++.+.++ .|++||+.+++. ..+..+.......+|++ +|+.|+.++ .+|.
T Consensus 243 ---l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~sp--DG~~l~f~sd~~g~ 315 (433)
T PRK04922 243 ---VASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAP--DGKSIYFTSDRGGR 315 (433)
T ss_pred ---eccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECC--CCCEEEEEECCCCC
Confidence 3334455668899999996 334545554 699999988774 44555655556677755 456666655 4554
Q ss_pred --EEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECC---CeEEEEECCCccee
Q 001295 527 --IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLL 601 (1106)
Q Consensus 527 --i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~ 601 (1106)
|.++|+.+++. ..+......... .+|+|+|++++..+.+ ..|.+||+.+++..
T Consensus 316 ~~iy~~dl~~g~~-~~lt~~g~~~~~---------------------~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 316 PQIYRVAASGGSA-ERLTFQGNYNAR---------------------ASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred ceEEEEECCCCCe-EEeecCCCCccC---------------------EEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence 55555554332 111111122223 4555555566665433 36999999887755
Q ss_pred EEEccCCCCCCcCeEEEccCCCEEEEEeCC---CcEEEEEccC
Q 001295 602 TSIDADGGLPASPRIRFNKDGCLLAVSTND---NGIKILATSD 641 (1106)
Q Consensus 602 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d---g~i~iwd~~~ 641 (1106)
.+.. .. ......|+|||++++..+.+ +.|.+++...
T Consensus 374 -~Lt~-~~--~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 374 -TLTP-GS--LDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred -ECCC-CC--CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 3332 11 34567999999998877653 3467777643
No 249
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.38 E-value=7.4e-10 Score=122.08 Aligned_cols=253 Identities=14% Similarity=0.203 Sum_probs=163.8
Q ss_pred CCCeeEEEEecCCCEEEEEeC-----CeEEEEEcCCC--ce--eeeecCCCCCeeEEEEecCCCceEEEee-CCCcEEEE
Q 001295 810 EEAVPCFALSKNDSYVMSASG-----GKISLFNMMTF--KT--MATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIY 879 (1106)
Q Consensus 810 ~~~v~~l~~s~~~~~l~~~sd-----g~i~vwd~~~~--~~--~~~~~~~~~~v~~l~~s~~d~~~la~g~-~dg~v~iw 879 (1106)
......++++|++++|.+... +.|..|++... ++ +............++++| ++++|+++. .+|.|.++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEE
Confidence 445677899999999998862 57888888753 32 233332345567899999 777777765 58999999
Q ss_pred Eeec-ceEEEE---ec----------CcccCeeEEEEecCCCEEEEEcC-CCcEEEEeCCCcc--cccceeecccCCCCC
Q 001295 880 NVRV-DEVKSK---LK----------GHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWE--KQKNRFLQIPTGRTP 942 (1106)
Q Consensus 880 d~~~-~~~~~~---l~----------~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~~~--~~~~~~~~~~~~~~~ 942 (1106)
++.. |.+... +. .-.....++.|+|||++|++... ...|.+|+++... ......+....+
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G--- 191 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG--- 191 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT---
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC---
Confidence 9986 443322 21 11244678999999998887642 3469999998754 222222333433
Q ss_pred CCCCCceEEEcCCCcEEEEE--eCCeEEEEecC--Cce--EeeecccC--CC--CCCeeEEEECCCCCEEEEEE-cCCeE
Q 001295 943 TAQSDTRVQFHQDQIHFLVV--HETQLAIFETT--KLE--CVKQWVPR--ES--SAPITHATFSCDSQLVYACF-LDATV 1011 (1106)
Q Consensus 943 ~~~~i~~~~~s~dg~~l~~~--~d~~v~i~d~~--~~~--~~~~~~~~--~h--~~~v~~l~~s~d~~~l~t~s-~Dg~i 1011 (1106)
...+.++|+||++++.+. .++.|.+|++. ++. .+..+... +. ......|+++|||++|+++. .+.+|
T Consensus 192 --~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 192 --SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp --SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred --CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 356999999999999884 56789999988 432 22222211 11 23688999999999988766 45789
Q ss_pred EEEEcC--CceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEe-CCCcEEEEeecCCCCccC
Q 001295 1012 CVFSAA--NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLESEGKWG 1077 (1106)
Q Consensus 1012 ~vwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~-~Dg~v~vW~~~~~~~~~~ 1077 (1106)
.+|+++ +|++.. +. ..+. ....|..++++| ||++|+++. .++.|.+|+++...+.|.
T Consensus 270 ~vf~~d~~~g~l~~-~~---~~~~----~G~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 270 SVFDLDPATGTLTL-VQ---TVPT----GGKFPRHFAFSP-DGRYLYVANQDSNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp EEEEECTTTTTEEE-EE---EEEE----SSSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred EEEEEecCCCceEE-EE---EEeC----CCCCccEEEEeC-CCCEEEEEecCCCeEEEEEEeCCCCcEE
Confidence 999993 344322 21 1111 114567899999 688877666 667999999975554443
No 250
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.37 E-value=4.6e-11 Score=118.33 Aligned_cols=155 Identities=11% Similarity=0.216 Sum_probs=108.3
Q ss_pred eEEEEecCCCceEEEeeC----------CCcEEEEEeec-ceEEEEecC-cccCeeEEEEecCCCEEEEE--cCCCcEEE
Q 001295 855 TFLAFHPQDNNIIAIGMD----------DSSIQIYNVRV-DEVKSKLKG-HSKRITGLAFSHALNVLVSS--GADSQLCV 920 (1106)
Q Consensus 855 ~~l~~s~~d~~~la~g~~----------dg~v~iwd~~~-~~~~~~l~~-h~~~V~~l~~s~d~~~l~s~--s~Dg~i~v 920 (1106)
..+.|++ .|.+|++-.. -|...+|.+.. +.....+.- ..++|.+++|+|+|..+|.. ..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 4567788 5655544332 13455555533 233334432 34579999999999987654 45789999
Q ss_pred EeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEe----CCeEEEEecCCceEeeecccCCCCCCeeEEEEC
Q 001295 921 WSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----ETQLAIFETTKLECVKQWVPRESSAPITHATFS 996 (1106)
Q Consensus 921 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~----d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s 996 (1106)
||++. + ...... . ..+..+.|||+|++|++++ .|.+.+||+++.+.+.... ...++.++||
T Consensus 88 yd~~~-~----~i~~~~-~-----~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~~~~t~~~Ws 152 (194)
T PF08662_consen 88 YDVKG-K----KIFSFG-T-----QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----HSDATDVEWS 152 (194)
T ss_pred EcCcc-c----EeEeec-C-----CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc----cCcEEEEEEc
Confidence 99973 1 122222 1 2557899999999999942 4679999999999887764 3457999999
Q ss_pred CCCCEEEEEEc------CCeEEEEEcCCceeEEeeC
Q 001295 997 CDSQLVYACFL------DATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus 997 ~d~~~l~t~s~------Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
|||++|+++.. |..++||++. |+++.+..
T Consensus 153 PdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 153 PDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred CCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 99999998874 7889999985 66766554
No 251
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=7.7e-11 Score=133.92 Aligned_cols=223 Identities=14% Similarity=0.119 Sum_probs=133.1
Q ss_pred eeeccCCCCcEEEEEecCCCeEEEEEecc--CcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEc
Q 001295 344 TRTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 421 (1106)
Q Consensus 344 ~~~~~h~~~v~~~~~sp~g~~llatg~~d--g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 421 (1106)
.....+...+.+.+|||||++|+++...+ ..|.+||+.+++... +....+.+.+.+||
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g~~~~~~~S 248 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKGSNSAPAWS 248 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCCCccceEEC
Confidence 34456788899999999999744433222 359999999886543 22233456789999
Q ss_pred cCCCEEEE-EeCCCeEEEEEc--cCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeC--CCCceeEE
Q 001295 422 PDGSLFGV-AYSRHIVQIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA--TNGAKQYI 496 (1106)
Q Consensus 422 pdg~~las-~~~d~~v~iwd~--~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~--~~~~~~~~ 496 (1106)
|||+.|+. .+.++...||.+ .++. .+ .+..|...+....|+|||+. +++++..++...||.+ .+++. ..
T Consensus 249 PDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-l~f~s~~~g~~~Iy~~~~~~g~~-~~ 322 (427)
T PRK02889 249 PDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS-IYFTSDRGGAPQIYRMPASGGAA-QR 322 (427)
T ss_pred CCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE-EEEEecCCCCcEEEEEECCCCce-EE
Confidence 99999875 567777666654 4443 22 35556666778899999995 2334444566666654 44443 22
Q ss_pred EeccCCCeEEEeccccCCceEEEEEecCC---eEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEE
Q 001295 497 FEGHEAPVYSVCPHHKENIQFIFSTALDG---KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 573 (1106)
Q Consensus 497 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 573 (1106)
+..+........|+ ++|++|+..+.++ .|.+||+.++.... +.. ........|+||
T Consensus 323 lt~~g~~~~~~~~S--pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spd----------------- 381 (427)
T PRK02889 323 VTFTGSYNTSPRIS--PDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPN----------------- 381 (427)
T ss_pred EecCCCCcCceEEC--CCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCC-----------------
Confidence 22222333345664 4557777766554 69999987754332 211 112233444554
Q ss_pred EcCCCCEEEEEECCC---eEEEEECCCcceeEEEccCCCCCCcCeEEEcc
Q 001295 574 FDTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 620 (1106)
Q Consensus 574 ~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 620 (1106)
++.|+..+.++ .+++.++ ++.....+..+. ..+...+|+|
T Consensus 382 ----g~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~--g~~~~p~wsp 424 (427)
T PRK02889 382 ----GRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQG--GDVREPSWGP 424 (427)
T ss_pred ----CCEEEEEEecCCCEEEEEEEC-CCCceEEeecCC--CCCCCCccCC
Confidence 44565554322 4566666 455555554332 2466678876
No 252
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.36 E-value=5.3e-12 Score=120.49 Aligned_cols=163 Identities=19% Similarity=0.273 Sum_probs=122.7
Q ss_pred hHHHHHHHHHHHhHhcHHHHHHHHHHhhCCCcc---------HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhhH
Q 001295 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN---------MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFE 75 (1106)
Q Consensus 5 ~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---------~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~ 75 (1106)
+.|+.+||+.||-..||.++|+.+.+|+|+..+ -..++.+|..|+-++|+..+..+. ...-+..+.+.|.
T Consensus 26 ~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~-PeiLd~n~~l~F~ 104 (228)
T KOG2659|consen 26 REDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN-PEILDTNRELFFH 104 (228)
T ss_pred hhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC-hHHHccchhHHHH
Confidence 678999999999999999999999999999872 568899999999999999999883 2222233449999
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccchhhccCCC--chHHHHHHHHHHHhhhcc
Q 001295 76 IRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD--TKSARSIMLVELKKLIEA 153 (1106)
Q Consensus 76 i~~q~~lEll~~~~~~~A~~~l~~~l~~l~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~--~~~~r~~l~~~l~~~~~~ 153 (1106)
+.+|+++||+..+..++|++++|.++.|+...+++.++.|...|..--++ ......... ....|.++...+...|-.
T Consensus 105 Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~-~~~~sp~~~l~~~s~R~kvA~~vN~aiL~ 183 (228)
T KOG2659|consen 105 LQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFE-LSQESPSAELLSQSLRQKVASEVNSAILA 183 (228)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcC-CcccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887888888877777554443 222121111 345577777776554433
Q ss_pred CCCCcCcCCchhhHhh
Q 001295 154 NPLFRDKLQFPNLKNS 169 (1106)
Q Consensus 154 ~~~~~~~~rl~~l~~q 169 (1106)
.--.....+|.-|+..
T Consensus 184 ~~~~~~~~~l~~llk~ 199 (228)
T KOG2659|consen 184 SQEHESEPKLPFLLKL 199 (228)
T ss_pred HhcccccchHHHHHHH
Confidence 2222222278888744
No 253
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=8.2e-11 Score=118.99 Aligned_cols=115 Identities=15% Similarity=0.185 Sum_probs=100.5
Q ss_pred eEEEEecC--CCEEEEEe-CCeEEEEEcCCC-ceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEE
Q 001295 814 PCFALSKN--DSYVMSAS-GGKISLFNMMTF-KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 889 (1106)
Q Consensus 814 ~~l~~s~~--~~~l~~~s-dg~i~vwd~~~~-~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~ 889 (1106)
+.+.|-+. ...+|++. -+.+++||.+.+ +.+..+.-...+++++...| ++++|++|..-|.+..||+..++++..
T Consensus 206 tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~ 284 (412)
T KOG3881|consen 206 TDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGC 284 (412)
T ss_pred ccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCceeecc
Confidence 44556555 67788888 699999999865 45667777788999999999 999999999999999999999998877
Q ss_pred -ecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccc
Q 001295 890 -LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ 929 (1106)
Q Consensus 890 -l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~ 929 (1106)
+.+-.+.|.++..+|.+++|+++|-|+.|||+|+++.+..
T Consensus 285 ~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 285 GLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred ccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 8999999999999999999999999999999999995543
No 254
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.34 E-value=1.3e-10 Score=115.09 Aligned_cols=276 Identities=13% Similarity=0.210 Sum_probs=174.2
Q ss_pred cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcce---eEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCC
Q 001295 348 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRER---LVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 424 (1106)
Q Consensus 348 ~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 424 (1106)
...+-|.++.|..+|.+ ||||..+|.|.++.-+.... .....|+..+. .+-...-..-...|..+.|.+++
T Consensus 23 teadiis~vef~~~Ge~-LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshep-----EFDYLkSleieEKinkIrw~~~~ 96 (433)
T KOG1354|consen 23 TEADIISAVEFDHYGER-LATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEP-----EFDYLKSLEIEEKINKIRWLDDG 96 (433)
T ss_pred chhcceeeEEeecccce-EeecCCCCeEEEeecccccccceeeeeeeeccCc-----ccchhhhhhhhhhhhhceecCCC
Confidence 35678999999999996 99999999999997543222 11111211111 00000001223578999999965
Q ss_pred C--EEEEEeCCCeEEEEEccCCceee--------------------------------eeee-eccccCCeeEEEEcCCC
Q 001295 425 S--LFGVAYSRHIVQIYSYHGGDEVR--------------------------------QHLE-IDAHVGGVNDIAFSHPN 469 (1106)
Q Consensus 425 ~--~las~~~d~~v~iwd~~~~~~~~--------------------------------~~~~-l~~h~~~V~~~~~s~d~ 469 (1106)
. .++..+.|.+|++|.+....... +... -.+|.--|++|.++.|.
T Consensus 97 n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~ 176 (433)
T KOG1354|consen 97 NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK 176 (433)
T ss_pred CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc
Confidence 4 56677899999999876321110 0001 13577779999999999
Q ss_pred CceEEEEecCCCcEEEEeCCCCceeE---EEec-----cCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCcee--
Q 001295 470 KQLCVITCGDDKTIKVWDATNGAKQY---IFEG-----HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-- 539 (1106)
Q Consensus 470 ~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~-----h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-- 539 (1106)
. .++++ +|=.|.+|+++--..-. .++. -+..|++..|+|... ++++-.+..|+|++.|++....-.
T Consensus 177 E--t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~h 252 (433)
T KOG1354|consen 177 E--TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAH 252 (433)
T ss_pred c--eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcch
Confidence 8 56665 47889999987432222 2222 234578888988755 688888889999999998432111
Q ss_pred --EeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEEC-CCcceeEEEccCCC-------
Q 001295 540 --DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM-DSVQLLTSIDADGG------- 609 (1106)
Q Consensus 540 --~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~-~~~~~~~~~~~~~~------- 609 (1106)
.+..+..+.. + -+...--..|..+.|+.+|+++++-+. -+|++||+ ...+++.++..|..
T Consensus 253 sKlfEepedp~~--------r-sffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~ 322 (433)
T KOG1354|consen 253 SKLFEEPEDPSS--------R-SFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCS 322 (433)
T ss_pred hhhhccccCCcc--------h-hhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHH
Confidence 1111111111 0 000111124556777777778877543 58999999 45667777665432
Q ss_pred ---CCCc---CeEEEccCCCEEEEEeCCCcEEEEEccCCc
Q 001295 610 ---LPAS---PRIRFNKDGCLLAVSTNDNGIKILATSDGI 643 (1106)
Q Consensus 610 ---~~~v---~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 643 (1106)
...| ..++|+.++.++++|+....+++++...|.
T Consensus 323 lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 323 LYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred HhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 1122 358899999999999999999999976663
No 255
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=1.6e-10 Score=131.33 Aligned_cols=192 Identities=11% Similarity=0.118 Sum_probs=123.2
Q ss_pred cCCCCcCeEEEEEccCCCEEEEEeCC---CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEE
Q 001295 408 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 484 (1106)
Q Consensus 408 ~~~h~~~V~~l~~spdg~~las~~~d---~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~ 484 (1106)
+..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+. ++++.+.++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 265 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ 265 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence 34667789999999999999987643 469999999887543 3333455678999999995 344667788766
Q ss_pred EEeC--CCCceeEEEeccCCCeEEEeccccCCceEEEEEe-cCCeEEEEeCCCCC-ceeEeeCCCCeeEEEEEecCCCeE
Q 001295 485 VWDA--TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRT 560 (1106)
Q Consensus 485 iwd~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~ 560 (1106)
||.+ .++. ...+..+........|++ ||+.|+..+ .+|...+|.++... ....+.......
T Consensus 266 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp--DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~------------ 330 (427)
T PRK02889 266 IYTVNADGSG-LRRLTQSSGIDTEPFFSP--DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYN------------ 330 (427)
T ss_pred EEEEECCCCC-cEECCCCCCCCcCeEEcC--CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCc------------
Confidence 6654 4443 556665655566677765 456666554 35666777654211 111111111111
Q ss_pred EEeeeccceeEEEEcCCCCEEEEEECCC---eEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCC
Q 001295 561 YQGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 632 (1106)
Q Consensus 561 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 632 (1106)
....|+|+|++++..+.++ .|.+||+.+++...... . .......|+|||+.|+..+.++
T Consensus 331 ---------~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~---~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 331 ---------TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-T---TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred ---------CceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC-C---CCccCceECCCCCEEEEEEecC
Confidence 1245666666777665443 69999998887543322 2 1246789999999998887654
No 256
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=5.6e-09 Score=105.81 Aligned_cols=257 Identities=12% Similarity=0.194 Sum_probs=175.0
Q ss_pred CCCCeeEEEEecCCCEEEEEe----CCeEEEEEcCC--Cceee--eecCCCCCeeEEEEecCCCceEEEee-CCCcEEEE
Q 001295 809 PEEAVPCFALSKNDSYVMSAS----GGKISLFNMMT--FKTMA--TFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIY 879 (1106)
Q Consensus 809 ~~~~v~~l~~s~~~~~l~~~s----dg~i~vwd~~~--~~~~~--~~~~~~~~v~~l~~s~~d~~~la~g~-~dg~v~iw 879 (1106)
....++-++++|+++.|.++. +|.|..|.++. |++.. .......+-+.+++++ ++++|+++. ..|.|.++
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY 116 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence 567788999999999998885 36788887764 44322 2222233448899999 888888776 45799999
Q ss_pred Eeec-ceEEE--EecCcccC----------eeEEEEecCCCEEEEEc--CCCcEEEEeCCCcccccceeecccCCCCCCC
Q 001295 880 NVRV-DEVKS--KLKGHSKR----------ITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA 944 (1106)
Q Consensus 880 d~~~-~~~~~--~l~~h~~~----------V~~l~~s~d~~~l~s~s--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 944 (1106)
-++. |.+.. .+..|.+. +....|.|++++|++.+ .|. |.+|+++.++...........|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~y~~~dg~L~~~~~~~v~~G----- 190 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFLYDLDDGKLTPADPAEVKPG----- 190 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEEEEcccCccccccccccCCC-----
Confidence 9865 43322 12235554 88899999999999875 454 9999999877655444444444
Q ss_pred CCCceEEEcCCCcEEEEE--eCCeEEEEecCCc--e--Eee---ecccCC-CCCCeeEEEECCCCCEEEEEEc-CCeEEE
Q 001295 945 QSDTRVQFHQDQIHFLVV--HETQLAIFETTKL--E--CVK---QWVPRE-SSAPITHATFSCDSQLVYACFL-DATVCV 1013 (1106)
Q Consensus 945 ~~i~~~~~s~dg~~l~~~--~d~~v~i~d~~~~--~--~~~---~~~~~~-h~~~v~~l~~s~d~~~l~t~s~-Dg~i~v 1013 (1106)
...+.++|+|++++..+. -+++|.+|..... + .+. .+..+- .......|.+++||++|.++.. ...|.+
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 456999999999988873 6789999998773 2 111 121111 1556788999999999997753 236888
Q ss_pred EEcCC--ceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCC-cEEEEeecCCCCccCCCCC
Q 001295 1014 FSAAN--LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG-GVHVFEPLESEGKWGVPPP 1081 (1106)
Q Consensus 1014 wd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg-~v~vW~~~~~~~~~~~~~~ 1081 (1106)
|.+.. +++. .+. ... .....|-...|.+ ++++|+++..|+ +|.++.++...+.+.....
T Consensus 271 f~V~~~~g~L~-~~~--~~~-----teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 271 FSVDPDGGKLE-LVG--ITP-----TEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred EEEcCCCCEEE-EEE--Eec-----cCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEeccc
Confidence 87743 3332 221 011 2224566789998 578888777664 7999999877766665443
No 257
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.32 E-value=7.5e-09 Score=110.13 Aligned_cols=205 Identities=12% Similarity=0.087 Sum_probs=126.0
Q ss_pred eEEEEecCCCEEEEEe---CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec-ceEE--
Q 001295 814 PCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVK-- 887 (1106)
Q Consensus 814 ~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~-~~~~-- 887 (1106)
..++++|||++|.+.. +..|.+.|+.+++.+.++....+ ..-...+. +..++ -+.||......+.+ |+..
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-~~vy~t~e-~~~~~--~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-YHIFPTAN-DTFFM--HCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-cEEEEecC-CccEE--EeecCceEEEEecCCCceEEe
Confidence 3567778888777664 57788888888888777764221 11222221 22221 22344444333322 2211
Q ss_pred --EEecCcccCee-EEEEec-CCCEEEEEcCCCcEEEEeCCCcccccceeecccCCC----CCCCCCCceEEEcCCCcEE
Q 001295 888 --SKLKGHSKRIT-GLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR----TPTAQSDTRVQFHQDQIHF 959 (1106)
Q Consensus 888 --~~l~~h~~~V~-~l~~s~-d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~s~dg~~l 959 (1106)
..+.+-...+. .-.|++ ||+++..... |+|.+-|+...+............. .-.......++++++++.+
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 11111011110 014456 8888877766 9999999765443332222222111 0111344459999999988
Q ss_pred EEEe---C--------CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCC-EEEEEE-cCCeEEEEEcCCceeEEeeC
Q 001295 960 LVVH---E--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus 960 ~~~~---d--------~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~-~l~t~s-~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
.+.. . +.|.++|..+++.+..+.. ...+..++++||++ +|++.+ .++.|.|+|..+++.+..+.
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 8731 2 5799999999999998875 45899999999999 777666 57889999999999998873
No 258
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=1.1e-09 Score=115.57 Aligned_cols=327 Identities=12% Similarity=0.180 Sum_probs=198.7
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecC-----------CCc
Q 001295 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-----------DKT 482 (1106)
Q Consensus 414 ~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~-----------d~~ 482 (1106)
.=+.+.|||-|.||++--..| |.+|--.+-..++ .+ .|. .|..+.|||..+ +|+|-+. ...
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~---RF-~Hp-~Vq~idfSP~Ek--YLVT~s~~p~~~~~~d~e~~~ 283 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQ---RF-YHP-GVQFIDFSPNEK--YLVTYSPEPIIVEEDDNEGQQ 283 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHH---hc-cCC-CceeeecCCccc--eEEEecCCccccCcccCCCce
Confidence 457899999999999987777 8999765544443 33 354 589999999999 7888652 257
Q ss_pred EEEEeCCCCceeEEEecc--CCCeEEE-eccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCe
Q 001295 483 IKVWDATNGAKQYIFEGH--EAPVYSV-CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 559 (1106)
Q Consensus 483 i~iwd~~~~~~~~~~~~h--~~~v~~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 559 (1106)
++|||+.+|...+.|... ...++.+ .|+ .|+++++.-.. ..|.+|+..+...+-.-...-..|....|+|.+..
T Consensus 284 l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS--~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~l 360 (698)
T KOG2314|consen 284 LIIWDIATGLLKRSFPVIKSPYLKWPIFRWS--HDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNL 360 (698)
T ss_pred EEEEEccccchhcceeccCCCccccceEEec--cCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcce
Confidence 999999999999888762 2333333 454 44477776665 56889987664433322333345666666666541
Q ss_pred EEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEc
Q 001295 560 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 639 (1106)
Q Consensus 560 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 639 (1106)
+. -|.|..+ ..-..+.+-.+.+++.+++-..+.- .-..+-|-.+|.+|+.-..-.+
T Consensus 361 lA-----------Ywtpe~~-----~~parvtL~evPs~~~iRt~nlfnV--sDckLhWQk~gdyLcvkvdR~t------ 416 (698)
T KOG2314|consen 361 LA-----------YWTPETN-----NIPARVTLMEVPSKREIRTKNLFNV--SDCKLHWQKSGDYLCVKVDRHT------ 416 (698)
T ss_pred EE-----------EEccccc-----CCcceEEEEecCccceeeeccceee--eccEEEeccCCcEEEEEEEeec------
Confidence 11 1111111 1123566677777777766554321 1124667778888876432100
Q ss_pred cCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCcee
Q 001295 640 SDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSK 719 (1106)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 719 (1106)
.. . + .+.--.+.
T Consensus 417 -K~-~----~--------------------------------------------------------------~g~f~n~e 428 (698)
T KOG2314|consen 417 -KS-K----V--------------------------------------------------------------KGQFSNLE 428 (698)
T ss_pred -cc-c----c--------------------------------------------------------------cceEeeEE
Confidence 00 0 0 00001334
Q ss_pred eEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecC---ceEEEeeccccccCCCCccccccCccccCCCC
Q 001295 720 VWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN---AIHLLWKWQRTERNSSGKATASVAPQLWQPPS 796 (1106)
Q Consensus 720 vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~ 796 (1106)
|+.+.....+..... -...|...+|-|.|+.+++.+.+ .++.+|.+.... ..
T Consensus 429 IfrireKdIpve~ve-------lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~------------------~~ 483 (698)
T KOG2314|consen 429 IFRIREKDIPVEVVE-------LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI------------------KK 483 (698)
T ss_pred EEEeeccCCCceeee-------cchheeeeeeccCCCeEEEEEccccccceeEEEeecCC------------------Cc
Confidence 444443222221111 34678899999999988777664 566666554210 01
Q ss_pred CCccccccCCCCCCCCeeEEEEecCCCEEEEEe----CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeC
Q 001295 797 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS----GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD 872 (1106)
Q Consensus 797 ~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s----dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~ 872 (1106)
-.++.. + .....+.+.|+|.|++++.+. .|.+.++|+.-..+..+-.......+.+.|.| .|+|+++++.
T Consensus 484 ~~lVk~-~----dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDP-tGRYvvT~ss 557 (698)
T KOG2314|consen 484 PSLVKE-L----DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDP-TGRYVVTSSS 557 (698)
T ss_pred hhhhhh-h----cccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECC-CCCEEEEeee
Confidence 111111 1 335567899999999999885 58899999885333333333334578899999 9999999876
Q ss_pred CC
Q 001295 873 DS 874 (1106)
Q Consensus 873 dg 874 (1106)
-.
T Consensus 558 ~w 559 (698)
T KOG2314|consen 558 SW 559 (698)
T ss_pred hh
Confidence 54
No 259
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=3.6e-12 Score=140.37 Aligned_cols=213 Identities=16% Similarity=0.179 Sum_probs=146.7
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 428 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 428 (1106)
|+..-+|++||-+.++ |+.|+..|.|+++++.+|..... ..+|..+|+-+.=|.||..++
T Consensus 1100 ~~~~fTc~afs~~~~h-L~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~SavT~vePs~dgs~~L 1159 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNH-LAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQSAVTLVEPSVDGSTQL 1159 (1516)
T ss_pred cccceeeEEeecCCce-EEeeeccceEEEEEccCcccccc-------------------ccccccccccccccCCcceee
Confidence 7788999999999996 99999999999999999977653 689999999999999999888
Q ss_pred EEeCCC--eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEE-Eec---cCC
Q 001295 429 VAYSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI-FEG---HEA 502 (1106)
Q Consensus 429 s~~~d~--~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~---h~~ 502 (1106)
+.+.-. ...+|++.+- ....+++. .-.++.|+..... -+.|.....+.|||++++..+.+ +.+ ...
T Consensus 1160 tsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~--r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y 1231 (1516)
T KOG1832|consen 1160 TSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF--RALGTEADDALLYDVQTCSPLQTYLTDTVTSSY 1231 (1516)
T ss_pred eeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH--HHhcccccceEEEecccCcHHHHhcCcchhhhh
Confidence 765433 4789998752 22222333 3467889877553 23344445688999999988776 332 112
Q ss_pred CeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEE
Q 001295 503 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 582 (1106)
Q Consensus 503 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 582 (1106)
.-++..|+|.. .+++- || .+||.+..+.+..+..... .- .-.|+|.|+.++
T Consensus 1232 ~~n~a~FsP~D--~LIln---dG--vLWDvR~~~aIh~FD~ft~-------~~---------------~G~FHP~g~eVI 1282 (1516)
T KOG1832|consen 1232 SNNLAHFSPCD--TLILN---DG--VLWDVRIPEAIHRFDQFTD-------YG---------------GGGFHPSGNEVI 1282 (1516)
T ss_pred hccccccCCCc--ceEee---Cc--eeeeeccHHHHhhhhhhee-------cc---------------cccccCCCceEE
Confidence 22455665543 34443 44 6899987766554432211 00 113677777788
Q ss_pred EEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEE
Q 001295 583 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV 627 (1106)
Q Consensus 583 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 627 (1106)
.-++ |||+++.+.++....-. -..+.|+..|..+..
T Consensus 1283 INSE-----IwD~RTF~lLh~VP~Ld----qc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1283 INSE-----IWDMRTFKLLHSVPSLD----QCAVTFNSTGDVMYA 1318 (1516)
T ss_pred eech-----hhhhHHHHHHhcCcccc----ceEEEeccCccchhh
Confidence 7664 89999998887775432 246888888876654
No 260
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.30 E-value=2.7e-09 Score=111.79 Aligned_cols=337 Identities=12% Similarity=0.141 Sum_probs=206.5
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCC---------------cEE
Q 001295 571 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN---------------GIK 635 (1106)
Q Consensus 571 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg---------------~i~ 635 (1106)
.++++|.|.+|++... ..|.+|.-..+..+..+.. ..|..+.|+|.++||.+=+..+ .+.
T Consensus 37 ~~~~SP~G~~l~~~~~-~~V~~~~g~~~~~l~~~~~----~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~ 111 (561)
T COG5354 37 YVSESPLGTYLFSEHA-AGVECWGGPSKAKLVRFRH----PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVF 111 (561)
T ss_pred heeecCcchheehhhc-cceEEccccchhheeeeec----CCceecccCcccceeeeeccCCccChhhccCCccccCcee
Confidence 3444444445655444 4588998877766666542 3588999999999999875543 489
Q ss_pred EEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCC-CccccCCCCccccccC
Q 001295 636 ILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNG-DVRSLADVKPRITEES 714 (1106)
Q Consensus 636 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 714 (1106)
+||+.++ .++..+........ .+ ...++.+..+.+-. .
T Consensus 112 vwd~~sg-~iv~sf~~~~q~~~---------------------------------------~Wp~~k~s~~D~y~ARv-v 150 (561)
T COG5354 112 VWDIASG-MIVFSFNGISQPYL---------------------------------------GWPVLKFSIDDKYVARV-V 150 (561)
T ss_pred EEeccCc-eeEeeccccCCccc---------------------------------------ccceeeeeecchhhhhh-c
Confidence 9999988 55555544332200 11 12222333333332 3
Q ss_pred CCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCc--eEEE-----eecCceEEEeeccccccCCCCcccccc
Q 001295 715 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGN--AILA-----LASNAIHLLWKWQRTERNSSGKATASV 787 (1106)
Q Consensus 715 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~-----~~~dg~i~iw~~~~~~~~~~~~~~~~~ 787 (1106)
...+.++++...-.......+ ....|....++|.++ .|+. .+..+.+++|.+.
T Consensus 151 ~~sl~i~e~t~n~~~~p~~~l------r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp-------------- 210 (561)
T COG5354 151 GSSLYIHEITDNIEEHPFKNL------RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIP-------------- 210 (561)
T ss_pred cCeEEEEecCCccccCchhhc------cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEcc--------------
Confidence 357888886433233333322 246788889998753 2222 1234556666554
Q ss_pred CccccCCCCCCccc-cccCCCCCCCCeeEEEEecCCCEEEEEe------------CCeEEEEEcCCCceeeeecCCCCCe
Q 001295 788 APQLWQPPSGIMMT-NDVTDSNPEEAVPCFALSKNDSYVMSAS------------GGKISLFNMMTFKTMATFMPPPPAA 854 (1106)
Q Consensus 788 ~~~~w~~~~~~~~~-~~~~~~~~~~~v~~l~~s~~~~~l~~~s------------dg~i~vwd~~~~~~~~~~~~~~~~v 854 (1106)
.+..+. ..+ ....-..+.|.+.|++|++-- ...+.|+++....+.-.. ...++|
T Consensus 211 --------~~s~l~tk~l----fk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pV 277 (561)
T COG5354 211 --------KNSVLVTKNL----FKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPV 277 (561)
T ss_pred --------CCCeeeeeee----EeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccc
Confidence 222111 000 111223567777887766331 245889998854443333 557899
Q ss_pred eEEEEecCCCceEE--EeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCC---CcEEEEeCCCcccc
Q 001295 855 TFLAFHPQDNNIIA--IGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD---SQLCVWSSDGWEKQ 929 (1106)
Q Consensus 855 ~~l~~s~~d~~~la--~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D---g~i~vwd~~~~~~~ 929 (1106)
...+|.| .++.++ +|-.+..+.++|+... +... .....=+.+.|||.+++++.++-| |.+.+||......
T Consensus 278 hdf~W~p-~S~~F~vi~g~~pa~~s~~~lr~N-l~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~- 352 (561)
T COG5354 278 HDFTWEP-LSSRFAVISGYMPASVSVFDLRGN-LRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK- 352 (561)
T ss_pred eeeeecc-cCCceeEEecccccceeecccccc-eEEe--cCCcccccccccCcccEEEEecCCccccceEEeccCCceE-
Confidence 9999999 544443 3457889999998865 3333 344455678899999999998877 6799999877322
Q ss_pred cceeecccCCCCCCCCCCceEEEcCCCcEEEEE-------eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEE
Q 001295 930 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-------HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV 1002 (1106)
Q Consensus 930 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-------~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l 1002 (1106)
+.....+. .-.-+.|+|||.++.+. .|..+.|||+..... ...+.+.|.|.|++.
T Consensus 353 ---~~~~~~~~-----n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~----------fel~~~~W~p~~~~~ 414 (561)
T COG5354 353 ---VAGAFNGL-----NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV----------FELTNITWDPSGQYV 414 (561)
T ss_pred ---EEEEeecC-----CceEeeccCCceEEEecCCCcccccCcceEEEEecCchh----------hhhhhccccCCcccc
Confidence 22222222 33567899999999873 256899999864432 156778899989888
Q ss_pred EEEEcCC
Q 001295 1003 YACFLDA 1009 (1106)
Q Consensus 1003 ~t~s~Dg 1009 (1106)
.+.+.+.
T Consensus 415 ttsSs~~ 421 (561)
T COG5354 415 TTSSSCP 421 (561)
T ss_pred eeeccCC
Confidence 7777665
No 261
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.29 E-value=1.2e-09 Score=125.64 Aligned_cols=205 Identities=14% Similarity=0.120 Sum_probs=138.8
Q ss_pred CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCC---CcEEEEEeecceEEEEecCcccCeeEEEEecCCC
Q 001295 831 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN 907 (1106)
Q Consensus 831 g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~d---g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~ 907 (1106)
..|.++|..... .+.+..+...+...+|+| |+++||.+..+ ..|++||+.+++.. .+..+...+.+++|+|||+
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCC
Confidence 358888876443 445555666788999999 88888877644 47999999887643 3344556677899999998
Q ss_pred EEEE-EcCCC--cEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeC----CeEEEEecCCceEeee
Q 001295 908 VLVS-SGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE----TQLAIFETTKLECVKQ 980 (1106)
Q Consensus 908 ~l~s-~s~Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d----~~v~i~d~~~~~~~~~ 980 (1106)
.|+. .+.++ .|.+|++.++.... + . .+. .......|+|||++|+...+ ..|.++|+.+++....
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~---l--~-~~~---~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l 317 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTR---L--T-NGP---GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL 317 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEE---C--C-CCC---CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 7764 44444 58888988754211 1 1 111 13356789999999887422 2688889887765433
Q ss_pred cccCCCCCCeeEEEECCCCCEEEEEEcCC---eEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEE
Q 001295 981 WVPRESSAPITHATFSCDSQLVYACFLDA---TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1057 (1106)
Q Consensus 981 ~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t 1057 (1106)
. .+...+..+.|+|||++|+.++.++ .|.+||+.++.... +. .. .. .. ...|+| |++.|+.
T Consensus 318 ~---~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~------~~--~~-~~--~p~~sp-dg~~l~~ 381 (417)
T TIGR02800 318 T---FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LT------DT--GL-DE--SPSFAP-NGRMILY 381 (417)
T ss_pred e---cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-cc------CC--CC-CC--CceECC-CCCEEEE
Confidence 2 2345677889999999999888776 79999998865432 22 11 01 11 357899 6787777
Q ss_pred EeCCCc
Q 001295 1058 GLSDGG 1063 (1106)
Q Consensus 1058 ~~~Dg~ 1063 (1106)
.+.++.
T Consensus 382 ~~~~~~ 387 (417)
T TIGR02800 382 ATTRGG 387 (417)
T ss_pred EEeCCC
Confidence 666653
No 262
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.29 E-value=2e-10 Score=113.74 Aligned_cols=111 Identities=20% Similarity=0.335 Sum_probs=90.5
Q ss_pred CCCCeeEEEEecCCCEEEEEe---CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeC---CCcEEEEEee
Q 001295 809 PEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DSSIQIYNVR 882 (1106)
Q Consensus 809 ~~~~v~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~---dg~v~iwd~~ 882 (1106)
...+|.+++|+|+|+.+++.. +..|.+||++ ++.+..+. ...+..+.||| +|++|++|+. .|.|.+||+.
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECC
Confidence 345699999999999876653 5789999997 56666664 46788999999 8999998864 4679999999
Q ss_pred cceEEEEecCcccCeeEEEEecCCCEEEEEcC------CCcEEEEeCCC
Q 001295 883 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGA------DSQLCVWSSDG 925 (1106)
Q Consensus 883 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~------Dg~i~vwd~~~ 925 (1106)
+.+.+.... |. .++.++|+|||++|++++. |..++||++..
T Consensus 134 ~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 134 KKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 988887765 33 3789999999999998864 78899999865
No 263
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.28 E-value=8.6e-09 Score=109.70 Aligned_cols=238 Identities=10% Similarity=0.076 Sum_probs=149.3
Q ss_pred EecCCCEEEEEeC-----------CeEEEEEcCCCceeeeecCCCC-------CeeEEEEecCCCceEEEee-C-CCcEE
Q 001295 818 LSKNDSYVMSASG-----------GKISLFNMMTFKTMATFMPPPP-------AATFLAFHPQDNNIIAIGM-D-DSSIQ 877 (1106)
Q Consensus 818 ~s~~~~~l~~~sd-----------g~i~vwd~~~~~~~~~~~~~~~-------~v~~l~~s~~d~~~la~g~-~-dg~v~ 877 (1106)
+|||++.|.++.- +.|.+||..+.+.+..+..... ....++++| ||++|++.. . +..|.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEE
Confidence 9999998876643 6799999999999988764322 234789999 888888765 4 68999
Q ss_pred EEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcC-CC
Q 001295 878 IYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ-DQ 956 (1106)
Q Consensus 878 iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-dg 956 (1106)
++|+.+++.+.++.--.+ ..-...+.+..++ -+.||......++...........++.+... . -...-.|++ ||
T Consensus 132 VvD~~~~kvv~ei~vp~~-~~vy~t~e~~~~~--~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~-~-v~~rP~~~~~dg 206 (352)
T TIGR02658 132 VVDLEGKAFVRMMDVPDC-YHIFPTANDTFFM--HCRDGSLAKVGYGTKGNPKIKPTEVFHPEDE-Y-LINHPAYSNKSG 206 (352)
T ss_pred EEECCCCcEEEEEeCCCC-cEEEEecCCccEE--EeecCceEEEEecCCCceEEeeeeeecCCcc-c-cccCCceEcCCC
Confidence 999999999888764221 1112222222111 1234443333332211111111111111000 0 000114566 99
Q ss_pred cEEEEEeCCeEEEEecCC-----ceEeeecccCC-----CCCCeeEEEECCCCCEEEEEEc----------CCeEEEEEc
Q 001295 957 IHFLVVHETQLAIFETTK-----LECVKQWVPRE-----SSAPITHATFSCDSQLVYACFL----------DATVCVFSA 1016 (1106)
Q Consensus 957 ~~l~~~~d~~v~i~d~~~-----~~~~~~~~~~~-----h~~~v~~l~~s~d~~~l~t~s~----------Dg~i~vwd~ 1016 (1106)
+++.++.+|.|.+.|+.. ...+..+.... ....+.-+++++|++.|+.... .+.|.++|.
T Consensus 207 ~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 207 RLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred cEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 999998889999999543 33322221110 1233445999999999887542 247999999
Q ss_pred CCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCC-EEEEEe-CCCcEEEEeecCCC
Q 001295 1017 ANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPLESE 1073 (1106)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~-~l~t~~-~Dg~v~vW~~~~~~ 1073 (1106)
.+++.+.++. .... .+ .++++| |++ +|++.. .++.|.+.|+.+++
T Consensus 287 ~t~kvi~~i~----vG~~-----~~--~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 287 KTGKRLRKIE----LGHE-----ID--SINVSQ-DAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred CCCeEEEEEe----CCCc-----ee--eEEECC-CCCeEEEEeCCCCCcEEEEECcCCe
Confidence 9999999887 2211 33 799999 677 777655 68899999999987
No 264
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.25 E-value=2.7e-10 Score=113.09 Aligned_cols=204 Identities=13% Similarity=0.139 Sum_probs=137.3
Q ss_pred ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEc-cCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEE
Q 001295 407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSY-HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 485 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~-~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~i 485 (1106)
.+.||.+.|++...-|-..-+++.+.|.+++||-- +.++....+ ...-..+++++.+.++.. .|+.|-..|++.-
T Consensus 19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI--~~~mP~~~~~~~y~~e~~--~L~vg~~ngtvte 94 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI--YHYMPSPCSAMEYVSESR--RLYVGQDNGTVTE 94 (404)
T ss_pred hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh--hhhCCCCceEeeeeccce--EEEEEEecceEEE
Confidence 46899999999999998888999999999999954 444433221 122356789999999888 7888989999988
Q ss_pred EeCC----CCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEE
Q 001295 486 WDAT----NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 561 (1106)
Q Consensus 486 wd~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 561 (1106)
+.+. .-..++....|...|..+.|+... .++++.+.|..+.---.+.+..+-.+..... + .+-
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~--e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~-----~--t~~---- 161 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTH--EWVLSTGKDKQFAWHCTESGNRLGGYNFETP-----A--SAL---- 161 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCc--eeEEEeccccceEEEeeccCCcccceEeecc-----C--CCC----
Confidence 8654 344556677899999999986555 6899999988765333333222211110000 0 000
Q ss_pred EeeeccceeEEEEcCCCCEEEEEECCCeEEEEEC--CCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEc
Q 001295 562 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM--DSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 639 (1106)
Q Consensus 562 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~--~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 639 (1106)
.+.-. +...|...|.|.+-.+ ..-.++.++.++ ...+.+++|.+....|.+|..|..+.+||+
T Consensus 162 -----------~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h--~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdi 226 (404)
T KOG1409|consen 162 -----------QFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGH--TGEVTCLKWDPGQRLLFSGASDHSVIMWDI 226 (404)
T ss_pred -----------ceeeE--EEEecccccceEEEEEeecCCceEEEEcCc--ccceEEEEEcCCCcEEEeccccCceEEEec
Confidence 00000 2333444455544433 234456666655 668999999999999999999999999998
Q ss_pred cCC
Q 001295 640 SDG 642 (1106)
Q Consensus 640 ~~~ 642 (1106)
...
T Consensus 227 gg~ 229 (404)
T KOG1409|consen 227 GGR 229 (404)
T ss_pred cCC
Confidence 655
No 265
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=5.1e-09 Score=110.61 Aligned_cols=294 Identities=12% Similarity=0.152 Sum_probs=183.2
Q ss_pred cceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCC
Q 001295 744 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 823 (1106)
Q Consensus 744 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~ 823 (1106)
..|.-+.|||+.++|++-+..-.+.-|+-. ....+.+||+.+|........-......-.-+.||.|++
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~-----------e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdK 318 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDN-----------EGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDK 318 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccC-----------CCceEEEEEccccchhcceeccCCCccccceEEeccCCc
Confidence 346778888988888877654322222100 011245666667765543222100112223468999999
Q ss_pred EEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCC-----CcEEEEEeecceEEEEecCcccCee
Q 001295 824 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRVDEVKSKLKGHSKRIT 898 (1106)
Q Consensus 824 ~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~d-----g~v~iwd~~~~~~~~~l~~h~~~V~ 898 (1106)
++|--....|.||+..+..++..-.-....|....||| .+.+||.=... ..+.+-.+.+++.+++-.-|.-.=.
T Consensus 319 y~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDc 397 (698)
T KOG2314|consen 319 YFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDC 397 (698)
T ss_pred eeEEeccceEEEEecCceeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccceeeecc
Confidence 99988888999999887655543333455688999999 78888864422 3577777788877776665554444
Q ss_pred EEEEecCCCEEEEEc----------CCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE--Ee--C
Q 001295 899 GLAFSHALNVLVSSG----------ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VH--E 964 (1106)
Q Consensus 899 ~l~~s~d~~~l~s~s----------~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~--~~--d 964 (1106)
.|-|-.+|.+|+.-- .-..+.|+.+...+.. +.. ......+...+|-|.|..+++ +. .
T Consensus 398 kLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIp----ve~----velke~vi~FaWEP~gdkF~vi~g~~~k 469 (698)
T KOG2314|consen 398 KLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIP----VEV----VELKESVIAFAWEPHGDKFAVISGNTVK 469 (698)
T ss_pred EEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCC----cee----eecchheeeeeeccCCCeEEEEEccccc
Confidence 577888888887532 1123455555542211 111 111246788999999999888 32 3
Q ss_pred CeEEEEecCC-c---eEeeecccCCCCCCeeEEEECCCCCEEEEEE---cCCeEEEEEcCCceeEEeeCCCcccCCCCCC
Q 001295 965 TQLAIFETTK-L---ECVKQWVPRESSAPITHATFSCDSQLVYACF---LDATVCVFSAANLKLRCRINPSAYLPAGVSS 1037 (1106)
Q Consensus 965 ~~v~i~d~~~-~---~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s---~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1037 (1106)
.++.+|.+++ . +.+..+. ....+.+.|+|.|++++.+. ..|.+.++|..-..+...-.+.++..
T Consensus 470 ~tvsfY~~e~~~~~~~lVk~~d----k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~a----- 540 (698)
T KOG2314|consen 470 NTVSFYAVETNIKKPSLVKELD----KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAA----- 540 (698)
T ss_pred cceeEEEeecCCCchhhhhhhc----ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccccc-----
Confidence 5688898873 2 2233332 45668899999999987664 46889999987533332222222222
Q ss_pred CCccceEEEEeCCCCCEEEEEeCCC------cEEEEeecCC
Q 001295 1038 SNVHPLVIAAHPQEPNEFALGLSDG------GVHVFEPLES 1072 (1106)
Q Consensus 1038 ~~v~~~~~~~~~~d~~~l~t~~~Dg------~v~vW~~~~~ 1072 (1106)
..+-|.| .|++++|+++-. --++|++...
T Consensus 541 -----t~veWDP-tGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 541 -----TEVEWDP-TGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred -----ccceECC-CCCEEEEeeehhhhccccceEEEEeecH
Confidence 1588999 599999988643 4567776543
No 266
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=1.6e-09 Score=122.22 Aligned_cols=224 Identities=10% Similarity=0.074 Sum_probs=131.7
Q ss_pred cCCCCcEEEEEecCCCeE--EEEEeccC--cEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC
Q 001295 348 NQGSSPMSMDFHPVQQTL--LLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 423 (1106)
Q Consensus 348 ~h~~~v~~~~~sp~g~~l--latg~~dg--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd 423 (1106)
.....+..-+|||||+.+ +++...+| .|.+.++.+++... +....+.....+||||
T Consensus 182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQLMPTFSPR 241 (428)
T ss_pred cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCccceEECCC
Confidence 355567788999999862 33444444 57788888776543 2223344567899999
Q ss_pred CCEEEEEeC-----CCeEEEEEccCCc--eeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE--eCCC-Cce
Q 001295 424 GSLFGVAYS-----RHIVQIYSYHGGD--EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW--DATN-GAK 493 (1106)
Q Consensus 424 g~~las~~~-----d~~v~iwd~~~~~--~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw--d~~~-~~~ 493 (1106)
|++||..+. +-.+.+|++.++. ...++ ..++.+.....+|+|||+. ++++...++...|| ++.. +..
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~l--t~~~~~~~~~p~wSPDG~~-Laf~s~~~g~~~ly~~~~~~~g~~ 318 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRL--LNEAFGTQGNPSFSPDGTR-LVFVSNKDGRPRIYIMQIDPEGQS 318 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEe--ecCCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECcccccc
Confidence 999987653 2234557776532 12221 2223344577899999995 23334456655555 4432 333
Q ss_pred eEEEeccCCCeEEEeccccCCceEEEEEecC---CeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeecccee
Q 001295 494 QYIFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 570 (1106)
Q Consensus 494 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~ 570 (1106)
...+..+...+....|+++ |+.|+..+.+ ..|.+||+.+++... +......+....|+|||+
T Consensus 319 ~~~lt~~~~~~~~p~wSPD--G~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~------------ 383 (428)
T PRK01029 319 PRLLTKKYRNSSCPAWSPD--GKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSL------------ 383 (428)
T ss_pred eEEeccCCCCccceeECCC--CCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCC------------
Confidence 4555555556667777655 4666655443 468899988765432 222222344455555554
Q ss_pred EEEEcCCCCEEEEEE---CCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccC
Q 001295 571 VVQFDTTKNRFLAAG---DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 621 (1106)
Q Consensus 571 ~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 621 (1106)
.|+... ....|++||+.+++........ ..+...+|+|-
T Consensus 384 ---------~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~---g~~~~p~Ws~~ 425 (428)
T PRK01029 384 ---------HLVYSAGNSNESELYLISLITKKTRKIVIGS---GEKRFPSWGAF 425 (428)
T ss_pred ---------EEEEEECCCCCceEEEEECCCCCEEEeecCC---CcccCceecCC
Confidence 454332 3467999999887765554332 23566788774
No 267
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.22 E-value=4.2e-09 Score=121.09 Aligned_cols=191 Identities=14% Similarity=0.113 Sum_probs=123.4
Q ss_pred cCCCCcCeEEEEEccCCCEEEEEeCC---CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCC--c
Q 001295 408 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--T 482 (1106)
Q Consensus 408 ~~~h~~~V~~l~~spdg~~las~~~d---~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~--~ 482 (1106)
+..+...+...+|||||++||.++.+ ..|++||+.+++... +..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 34566678999999999999987644 479999999876432 3345566778999999985 344555444 5
Q ss_pred EEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEec-CC--eEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCe
Q 001295 483 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 559 (1106)
Q Consensus 483 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 559 (1106)
|++||+.++.. ..+..+........|++ +++.|+..+. ++ .|.++|+.+... ..+........
T Consensus 260 i~~~d~~~~~~-~~l~~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~---------- 325 (417)
T TIGR02800 260 IYVMDLDGKQL-TRLTNGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNA---------- 325 (417)
T ss_pred EEEEECCCCCE-EECCCCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCcc----------
Confidence 89999887764 34444544445566654 5566665543 33 566777664332 22222222222
Q ss_pred EEEeeeccceeEEEEcCCCCEEEEEECCC---eEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCC
Q 001295 560 TYQGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 632 (1106)
Q Consensus 560 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 632 (1106)
...|+|++++++.++.++ .|.+||+.++... .+.... ......|+|||++|+..+.++
T Consensus 326 -----------~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~---~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 326 -----------SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTG---LDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred -----------CeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCC---CCCCceECCCCCEEEEEEeCC
Confidence 345566666777776665 8999999876543 332221 245578999999998887754
No 268
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=2e-09 Score=122.69 Aligned_cols=222 Identities=10% Similarity=0.026 Sum_probs=129.2
Q ss_pred eeccCCCCcEEEEEecCCCeEEEEEeccC--cEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc
Q 001295 345 RTLNQGSSPMSMDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 422 (1106)
Q Consensus 345 ~~~~h~~~v~~~~~sp~g~~llatg~~dg--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 422 (1106)
....+...+.+.+|||||++|+.+...++ .|.+||+.+++.... ....+.....+|||
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l--------------------t~~~g~~~~~~wSP 271 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV--------------------TSFPGINGAPRFSP 271 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe--------------------cCCCCCcCCeeECC
Confidence 44456778999999999998555544443 588889988765321 11122344689999
Q ss_pred CCCEEEEE-eCCCe--EEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCC--cEEEEeCCCCceeEEE
Q 001295 423 DGSLFGVA-YSRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIF 497 (1106)
Q Consensus 423 dg~~las~-~~d~~--v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~ 497 (1106)
||+.|+.. +.++. |.+||+.+++.. .+..+.......+|+|||+. ++++...++ .|.++|+.+++... +
T Consensus 272 DG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~~-L 345 (448)
T PRK04792 272 DGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVSR-L 345 (448)
T ss_pred CCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEEE-E
Confidence 99988764 55564 778888887643 24455566788999999995 333443344 56677887776433 3
Q ss_pred eccCCCeEEEeccccCCceEEEEEec-CCe--EEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEE
Q 001295 498 EGHEAPVYSVCPHHKENIQFIFSTAL-DGK--IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 574 (1106)
Q Consensus 498 ~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~ 574 (1106)
..+.......+|++ +|++|+..+. ++. |.++|+.++... .+... ....... |
T Consensus 346 t~~g~~~~~~~~Sp--DG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps---------------------~ 400 (448)
T PRK04792 346 TFEGEQNLGGSITP--DGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPS---------------------V 400 (448)
T ss_pred ecCCCCCcCeeECC--CCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCce---------------------E
Confidence 22222233456654 4456655544 444 444566554322 11111 1111223 4
Q ss_pred cCCCCEEEEEE-CCC--eEEEEECCCcceeEEEccCCCCCCcCeEEEcc
Q 001295 575 DTTKNRFLAAG-DDF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 620 (1106)
Q Consensus 575 ~~~~~~l~~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 620 (1106)
+|+|+.++..+ .++ .+++++. +|.....+.... ..+...+|+|
T Consensus 401 spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~--g~~~~p~Wsp 446 (448)
T PRK04792 401 APNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ--GEVKSPAWSP 446 (448)
T ss_pred CCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCC--CCcCCCccCC
Confidence 55555555543 233 4777787 555556565432 2466777876
No 269
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=3.2e-09 Score=121.94 Aligned_cols=225 Identities=10% Similarity=0.056 Sum_probs=133.3
Q ss_pred ceeeeccCCCCcEEEEEecCCCeEEEEEecc--CcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEE
Q 001295 342 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 419 (1106)
Q Consensus 342 ~~~~~~~h~~~v~~~~~sp~g~~llatg~~d--g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 419 (1106)
+...+..+...+...+|||||++|+++...+ ..|.+||+.+++... +....+.+...+
T Consensus 190 ~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~~~ 249 (430)
T PRK00178 190 RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGAPA 249 (430)
T ss_pred CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCCeE
Confidence 3444556788899999999999855554333 368999998876543 222233455789
Q ss_pred EccCCCEEEEE-eCCC--eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCC--CcEEEEeCCCCcee
Q 001295 420 WSPDGSLFGVA-YSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD--KTIKVWDATNGAKQ 494 (1106)
Q Consensus 420 ~spdg~~las~-~~d~--~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d--~~i~iwd~~~~~~~ 494 (1106)
|||||++|+.. +.++ .|.+||+.+++..+ +..+........|+|||+. ++++...+ ..|+++|+.+++..
T Consensus 250 ~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~----lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~~d~~~g~~~ 324 (430)
T PRK00178 250 WSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR----VTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYKVNVNGGRAE 324 (430)
T ss_pred ECCCCCEEEEEEccCCCceEEEEECCCCCeEE----cccCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECCCCCEE
Confidence 99999998854 4444 68888999876432 4456666778899999995 33333333 35778888877743
Q ss_pred EEEeccCCCeEEEeccccCCceEEEEEec-CC--eEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeE
Q 001295 495 YIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 571 (1106)
Q Consensus 495 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~ 571 (1106)
. +...........|++ +|+.++..+. ++ .|.+||+.++.... +.. ........
T Consensus 325 ~-lt~~~~~~~~~~~Sp--dg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~------------------- 380 (430)
T PRK00178 325 R-VTFVGNYNARPRLSA--DGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPS------------------- 380 (430)
T ss_pred E-eecCCCCccceEECC--CCCEEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCce-------------------
Confidence 3 221122223345554 4456665554 33 57788887654322 111 11111234
Q ss_pred EEEcCCCCEEEEEECC---CeEEEEECCCcceeEEEccCCCCCCcCeEEEcc
Q 001295 572 VQFDTTKNRFLAAGDD---FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 620 (1106)
Q Consensus 572 ~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 620 (1106)
|+|+|+.++..+.+ ..|+++++.. .....+... ...+...+|+|
T Consensus 381 --~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~--~g~~~~p~ws~ 427 (430)
T PRK00178 381 --VAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTA--QGEVREPSWSP 427 (430)
T ss_pred --ECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCC--CCCcCCCccCC
Confidence 44555556554432 4577777743 333344332 22456667776
No 270
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.18 E-value=4.1e-09 Score=113.12 Aligned_cols=188 Identities=16% Similarity=0.293 Sum_probs=147.3
Q ss_pred cCCCEEEEEe-CCeEEEEEcCCCceeeeecCC---CCCeeEEEEe------c-------------CCCceEEEeeCCCcE
Q 001295 820 KNDSYVMSAS-GGKISLFNMMTFKTMATFMPP---PPAATFLAFH------P-------------QDNNIIAIGMDDSSI 876 (1106)
Q Consensus 820 ~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~---~~~v~~l~~s------~-------------~d~~~la~g~~dg~v 876 (1106)
|-..++|... ||.+++|+...++....+... .+..++..|. | .|-..++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 3456777776 899999999998887776532 2333443332 1 133478889999999
Q ss_pred EEEEeecceEEEEec--CcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcC
Q 001295 877 QIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 954 (1106)
Q Consensus 877 ~iwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 954 (1106)
.+|++..|+....+. .|.+.|+++.++.+-..|.|++.|+.+..|+..... .+....+.. ..+..++.+|
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-----~~~~~~~~~---~~~~sl~is~ 154 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-----IIRIWKEQK---PLVSSLCISP 154 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-----eeeeeccCC---CccceEEEcC
Confidence 999999999988886 599999999999999999999999999999998844 334444433 3678999999
Q ss_pred CCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCC-----CCEEEEE-EcCCeEEEEEcCC
Q 001295 955 DQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCD-----SQLVYAC-FLDATVCVFSAAN 1018 (1106)
Q Consensus 955 dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d-----~~~l~t~-s~Dg~i~vwd~~~ 1018 (1106)
||+.++++ .++|.+||+++++.+..|. +|.++|.+++|..+ |.+++++ ..+.-|.+|-+..
T Consensus 155 D~~~l~~a-s~~ik~~~~~~kevv~~ft--gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 DGKILLTA-SRQIKVLDIETKEVVITFT--GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCEEEec-cceEEEEEccCceEEEEec--CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99988874 3789999999999999998 99999999999877 6775544 4455678887654
No 271
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.17 E-value=1.5e-09 Score=116.42 Aligned_cols=146 Identities=15% Similarity=0.241 Sum_probs=119.1
Q ss_pred CCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCe
Q 001295 754 SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGK 832 (1106)
Q Consensus 754 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~ 832 (1106)
+-..++-|...|.|.+|++.. |.+... +....|.+.|.++.++.+-..|.+++ |+.
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~----------------------g~it~~-~st~~h~~~v~~~~~~~~~~ciyS~~ad~~ 125 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAG----------------------GEITAK-LSTDKHYGNVNEILDAQRLGCIYSVGADLK 125 (541)
T ss_pred CceEEEeecCCccEEEEEecC----------------------CeEEEE-EecCCCCCcceeeecccccCceEecCCcee
Confidence 444566777778888887653 222222 22235999999999999988999888 899
Q ss_pred EEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecC-----CC
Q 001295 833 ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA-----LN 907 (1106)
Q Consensus 833 i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d-----~~ 907 (1106)
+..|+..++..++.+......+.+++++| |++.+++|+ ++|++||+.+++.+..|.||.++|.+++|..+ |.
T Consensus 126 v~~~~~~~~~~~~~~~~~~~~~~sl~is~-D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~ 202 (541)
T KOG4547|consen 126 VVYILEKEKVIIRIWKEQKPLVSSLCISP-DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGK 202 (541)
T ss_pred EEEEecccceeeeeeccCCCccceEEEcC-CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccc
Confidence 99999999999999999999999999999 899999886 68999999999999999999999999999877 55
Q ss_pred EEE-EEcCCCcEEEEeCCC
Q 001295 908 VLV-SSGADSQLCVWSSDG 925 (1106)
Q Consensus 908 ~l~-s~s~Dg~i~vwd~~~ 925 (1106)
++. +...+.-+.+|-++.
T Consensus 203 ~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 203 YVLSSAAAERGITVWVVEK 221 (541)
T ss_pred eeeeccccccceeEEEEEc
Confidence 554 455566688887765
No 272
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=1.9e-08 Score=115.63 Aligned_cols=199 Identities=13% Similarity=0.121 Sum_probs=122.9
Q ss_pred cCCCCcCeEEEEEccCCCEEEEEeCC---CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCC--c
Q 001295 408 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--T 482 (1106)
Q Consensus 408 ~~~h~~~V~~l~~spdg~~las~~~d---~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~--~ 482 (1106)
+..+...+...+|||||++|+..+.+ ..|.+||+.+++... +....+.+...+|+|||+. ++++.+.++ .
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~ 268 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE 268 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence 34566789999999999999887643 469999999886432 3333345667999999995 333554444 6
Q ss_pred EEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEe-cCC--eEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCe
Q 001295 483 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 559 (1106)
Q Consensus 483 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 559 (1106)
|++||+.+++. ..+..+........|+++ |+.++..+ .+| .|.++|+.+++.. .+.......
T Consensus 269 Iy~~d~~~~~~-~~lt~~~~~~~~~~~spD--g~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~~~----------- 333 (430)
T PRK00178 269 IYVMDLASRQL-SRVTNHPAIDTEPFWGKD--GRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGNYN----------- 333 (430)
T ss_pred EEEEECCCCCe-EEcccCCCCcCCeEECCC--CCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCc-----------
Confidence 88889988764 345555555566677554 45555444 344 4666666554322 111111111
Q ss_pred EEEeeeccceeEEEEcCCCCEEEEEECC---CeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCC-C--c
Q 001295 560 TYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-N--G 633 (1106)
Q Consensus 560 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-g--~ 633 (1106)
....|+|+|++++....+ ..|.+||+.+++.. .+... . ......|+|||+.++..+.+ | .
T Consensus 334 ----------~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~-~--~~~~p~~spdg~~i~~~~~~~g~~~ 399 (430)
T PRK00178 334 ----------ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDT-S--LDESPSVAPNGTMLIYATRQQGRGV 399 (430)
T ss_pred ----------cceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCC-C--CCCCceECCCCCEEEEEEecCCceE
Confidence 123456666667665432 25889999887653 33221 1 22356899999999887654 3 3
Q ss_pred EEEEEcc
Q 001295 634 IKILATS 640 (1106)
Q Consensus 634 i~iwd~~ 640 (1106)
+.+++..
T Consensus 400 l~~~~~~ 406 (430)
T PRK00178 400 LMLVSIN 406 (430)
T ss_pred EEEEECC
Confidence 5566654
No 273
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.13 E-value=2.5e-08 Score=112.51 Aligned_cols=304 Identities=12% Similarity=0.071 Sum_probs=179.4
Q ss_pred EEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEE
Q 001295 473 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMA 552 (1106)
Q Consensus 473 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 552 (1106)
.++.++.++.|..+|..+|+.+..+.-......... -++..++.++.+|.+..+|..+++.+........ +.+..
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~----v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~p 141 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG----ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE-VLSPP 141 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE----EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCce-eecCC
Confidence 577888889999999999998877654432222222 2235788888999999999988877665443321 11000
Q ss_pred EecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCC---cCeEEEccCCCEEEEEe
Q 001295 553 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPA---SPRIRFNKDGCLLAVST 629 (1106)
Q Consensus 553 ~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---v~~v~~s~~~~~l~~~~ 629 (1106)
. + .+..++.++.++.|+.||..+|+.+..+........ ..+... .+..++.+.
T Consensus 142 ~--------------------v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~ 197 (377)
T TIGR03300 142 L--------------------V--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGF 197 (377)
T ss_pred E--------------------E--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEEC
Confidence 0 0 123577778899999999999998877754322100 011112 234677888
Q ss_pred CCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCcc
Q 001295 630 NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR 709 (1106)
Q Consensus 630 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 709 (1106)
.+|.+..+|..++... -....... .+
T Consensus 198 ~~g~v~ald~~tG~~~-W~~~~~~~---------------~g-------------------------------------- 223 (377)
T TIGR03300 198 AGGKLVALDLQTGQPL-WEQRVALP---------------KG-------------------------------------- 223 (377)
T ss_pred CCCEEEEEEccCCCEe-eeeccccC---------------CC--------------------------------------
Confidence 8899999998887321 11000000 00
Q ss_pred ccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCc
Q 001295 710 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAP 789 (1106)
Q Consensus 710 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 789 (1106)
.. ..-++.+. . ....+ .+..+++++.+|.+..||..+++
T Consensus 224 ---~~-~~~~~~~~------------------~----~~p~~--~~~~vy~~~~~g~l~a~d~~tG~------------- 262 (377)
T TIGR03300 224 ---RT-ELERLVDV------------------D----GDPVV--DGGQVYAVSYQGRVAALDLRSGR------------- 262 (377)
T ss_pred ---CC-chhhhhcc------------------C----CccEE--ECCEEEEEEcCCEEEEEECCCCc-------------
Confidence 00 00000000 0 00011 13456777778888888765322
Q ss_pred cccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCC-CCeeEEEEecCCCceE
Q 001295 790 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNII 867 (1106)
Q Consensus 790 ~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-~~v~~l~~s~~d~~~l 867 (1106)
.+|....+ ...... .++..+++++ +|.|..+|..+++.+....... ........ .+..|
T Consensus 263 ~~W~~~~~--------------~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l 323 (377)
T TIGR03300 263 VLWKRDAS--------------SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYL 323 (377)
T ss_pred EEEeeccC--------------CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEE
Confidence 13433211 011122 2345555555 8999999999998776553221 22223233 24578
Q ss_pred EEeeCCCcEEEEEeecceEEEEecCcccCeeE-EEEecCCCEEEEEcCCCcEEEE
Q 001295 868 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG-LAFSHALNVLVSSGADSQLCVW 921 (1106)
Q Consensus 868 a~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~-l~~s~d~~~l~s~s~Dg~i~vw 921 (1106)
++++.+|.|+++|..+|+.+.++..+...+.. .++. + ..|+.++.||.|..+
T Consensus 324 ~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 324 VVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 88999999999999999999988876654433 3333 3 358889999988765
No 274
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.11 E-value=1e-08 Score=100.09 Aligned_cols=274 Identities=12% Similarity=0.136 Sum_probs=167.6
Q ss_pred CceeeEecCCCCCCccceecccCccccccceEEEEEc---CCCc-eEEEeecCceEEEeeccccccCCCCccccccCccc
Q 001295 716 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT---NSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQL 791 (1106)
Q Consensus 716 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s---~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 791 (1106)
|++.+|++...+... ...+.. .....+..+.|. .+|. .++.+-..|.|.++........- .
T Consensus 46 Gkl~Lys~~d~~~~~-l~~~q~---~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~-----------~ 110 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSP-LDTLQC---TDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSV-----------H 110 (339)
T ss_pred cceEEEeecccccCc-cceeee---ecccccceeeeeeccCCccceeeeccccceEEEEeeccceeee-----------e
Confidence 678888887765544 222211 122334444443 2344 34555567888888754321100 0
Q ss_pred cCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCcee--eeecCCCCCeeEEEEecCCCceEE
Q 001295 792 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIA 868 (1106)
Q Consensus 792 w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~--~~~~~~~~~v~~l~~s~~d~~~la 868 (1106)
...-++..+ ......++.|++-+..++++. +|.+.+-+....... +..+.|.-++....|+..+.+++.
T Consensus 111 L~~ls~~ki--------~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvy 182 (339)
T KOG0280|consen 111 LRGLSSKKI--------SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVY 182 (339)
T ss_pred ecccchhhh--------hheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEE
Confidence 000011000 011245678888888888776 788886665544443 478899999999999987889999
Q ss_pred EeeCCCcEEEEEee-cceEEEE-ecCcccCeeEEEEec-CCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCC
Q 001295 869 IGMDDSSIQIYNVR-VDEVKSK-LKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQ 945 (1106)
Q Consensus 869 ~g~~dg~v~iwd~~-~~~~~~~-l~~h~~~V~~l~~s~-d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 945 (1106)
+|++||.+.-||++ .++.+.. -+-|...|.++.-+| .+.+|++|+.|-.|++||.++..+ ++ .++ +..+
T Consensus 183 tGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k----Pl--~~~--~v~G 254 (339)
T KOG0280|consen 183 TGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK----PL--FKA--KVGG 254 (339)
T ss_pred ecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC----cc--ccC--cccc
Confidence 99999999999998 4454443 456888999998875 478999999999999999986332 11 111 1125
Q ss_pred CCceEEEcCC--CcEEEEEeCCeEEEEecCCceEe---eecccCCCCCCeeEEEECCCCCEEEEEE-cCCeEE-EEEcCC
Q 001295 946 SDTRVQFHQD--QIHFLVVHETQLAIFETTKLECV---KQWVPRESSAPITHATFSCDSQLVYACF-LDATVC-VFSAAN 1018 (1106)
Q Consensus 946 ~i~~~~~s~d--g~~l~~~~d~~v~i~d~~~~~~~---~~~~~~~h~~~v~~l~~s~d~~~l~t~s-~Dg~i~-vwd~~~ 1018 (1106)
.|..+..+|. ++.|+++.-+..+|-+...+... .......|.+-.+.-.|......|||++ .|+.++ +|-..+
T Consensus 255 GVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 255 GVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred ceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 7888999885 44555555555556555443222 1111124554455555544445688765 566644 776555
Q ss_pred ce
Q 001295 1019 LK 1020 (1106)
Q Consensus 1019 ~~ 1020 (1106)
++
T Consensus 335 ~~ 336 (339)
T KOG0280|consen 335 GE 336 (339)
T ss_pred CC
Confidence 43
No 275
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=2.9e-08 Score=112.14 Aligned_cols=203 Identities=13% Similarity=0.073 Sum_probs=116.4
Q ss_pred CCCCcCeEEEEEccCCCEEE---EEeCC--CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecC----
Q 001295 409 KDPGVSVNRVIWSPDGSLFG---VAYSR--HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD---- 479 (1106)
Q Consensus 409 ~~h~~~V~~l~~spdg~~la---s~~~d--~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~---- 479 (1106)
......+..-+|||||+.++ +...+ ..|.+.++.+++..+ +....+.....+|+|||+.+ +++...
T Consensus 181 t~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~L-af~s~~~g~~ 255 (428)
T PRK01029 181 TQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKLL-AFISDRYGNP 255 (428)
T ss_pred ccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCEE-EEEECCCCCc
Confidence 33455667789999998633 33333 358888998876543 23334455678999999963 333322
Q ss_pred CCcEEEEeCCCC---ceeEEEeccCCCeEEEeccccCCceEEEEEe-cCCeEEEEeC--CCC-CceeEeeCCCCeeEEEE
Q 001295 480 DKTIKVWDATNG---AKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLY--DNL-GSRVDYEAPGRWCTTMA 552 (1106)
Q Consensus 480 d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~--~~~-~~~~~~~~~~~~v~~~~ 552 (1106)
+-.+.+|++..+ .......++.+.....+|++ ||+.|+..+ .+|...+|.+ ... .....+......+...
T Consensus 256 di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP--DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p- 332 (428)
T PRK01029 256 DLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP--DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCP- 332 (428)
T ss_pred ceeEEEeecccCCCCcceEeecCCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccce-
Confidence 333455777653 33333333333445567754 556566554 4665555543 221 1122222222223334
Q ss_pred EecCCCeEEEeeeccceeEEEEcCCCCEEEEEEC---CCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEe
Q 001295 553 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST 629 (1106)
Q Consensus 553 ~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 629 (1106)
.|+|+|++|+..+. ...|.+||+.+++....... ...+....|+|||+.|+...
T Consensus 333 --------------------~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~---~~~~~~p~wSpDG~~L~f~~ 389 (428)
T PRK01029 333 --------------------AWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS---PENKESPSWAIDSLHLVYSA 389 (428)
T ss_pred --------------------eECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC---CCCccceEECCCCCEEEEEE
Confidence 45555556665443 24799999998876544322 12467799999999888654
Q ss_pred C---CCcEEEEEccCC
Q 001295 630 N---DNGIKILATSDG 642 (1106)
Q Consensus 630 ~---dg~i~iwd~~~~ 642 (1106)
. ...|.++++.++
T Consensus 390 ~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 390 GNSNESELYLISLITK 405 (428)
T ss_pred CCCCCceEEEEECCCC
Confidence 3 346788888766
No 276
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=2.7e-08 Score=113.42 Aligned_cols=199 Identities=14% Similarity=0.072 Sum_probs=118.3
Q ss_pred cCCCCcCeEEEEEccCCCEEEEEeCC---CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCc--
Q 001295 408 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT-- 482 (1106)
Q Consensus 408 ~~~h~~~V~~l~~spdg~~las~~~d---~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~-- 482 (1106)
+..+...+.+.+|||||++|+..+.+ ..|.+||+.+++... +..+ .+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~---~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSF---PGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCC---CCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 34556788999999999999987543 358899998876432 2222 334457899999996 3445555664
Q ss_pred EEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEe-cCCe--EEEEeCCCCCceeEeeCCCCeeEEEEEecCCCe
Q 001295 483 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGK--IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 559 (1106)
Q Consensus 483 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 559 (1106)
|++||+.+++. ..+..+.......+|+++ ++.|+..+ .++. |.++|+.+++. ..+..........
T Consensus 288 Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpD--G~~I~f~s~~~g~~~Iy~~dl~~g~~-~~Lt~~g~~~~~~-------- 355 (448)
T PRK04792 288 IYVVDIATKAL-TRITRHRAIDTEPSWHPD--GKSLIFTSERGGKPQIYRVNLASGKV-SRLTFEGEQNLGG-------- 355 (448)
T ss_pred EEEEECCCCCe-EECccCCCCccceEECCC--CCEEEEEECCCCCceEEEEECCCCCE-EEEecCCCCCcCe--------
Confidence 77889887764 445555555666777654 45555444 3444 55556554332 1121111111223
Q ss_pred EEEeeeccceeEEEEcCCCCEEEEEEC-CC--eEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCC-Cc--
Q 001295 560 TYQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-NG-- 633 (1106)
Q Consensus 560 ~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-g~-- 633 (1106)
.|+|+|++++..+. ++ .|.++|+.+++... +.... ......|+|||+.|+..+.+ +.
T Consensus 356 -------------~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~---~d~~ps~spdG~~I~~~~~~~g~~~ 418 (448)
T PRK04792 356 -------------SITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTR---LDESPSVAPNGTMVIYSTTYQGKQV 418 (448)
T ss_pred -------------eECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCC---CCCCceECCCCCEEEEEEecCCceE
Confidence 45555556655443 33 56677888776533 32211 12345899999988876654 33
Q ss_pred EEEEEcc
Q 001295 634 IKILATS 640 (1106)
Q Consensus 634 i~iwd~~ 640 (1106)
+.+++..
T Consensus 419 l~~~~~~ 425 (448)
T PRK04792 419 LAAVSID 425 (448)
T ss_pred EEEEECC
Confidence 5666653
No 277
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.06 E-value=9.1e-08 Score=119.20 Aligned_cols=256 Identities=9% Similarity=0.088 Sum_probs=161.3
Q ss_pred eEEEEecCCC-EEEEEe-CCeEEEEEcCCCceeeeecC--C------------CCCeeEEEEecCCCceEEEe-eCCCcE
Q 001295 814 PCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFMP--P------------PPAATFLAFHPQDNNIIAIG-MDDSSI 876 (1106)
Q Consensus 814 ~~l~~s~~~~-~l~~~s-dg~i~vwd~~~~~~~~~~~~--~------------~~~v~~l~~s~~d~~~la~g-~~dg~v 876 (1106)
..+++++++. ++++-. ++.|++||... ..+..+.+ . -.....+++++ ++..|+++ ..++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 5688887644 444444 68899999864 44333322 1 12357899998 56554444 456789
Q ss_pred EEEEeecceEEEEecCc-----------------ccCeeEEEEec-CCCEEEEEcCCCcEEEEeCCCcccccce---eec
Q 001295 877 QIYNVRVDEVKSKLKGH-----------------SKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNR---FLQ 935 (1106)
Q Consensus 877 ~iwd~~~~~~~~~l~~h-----------------~~~V~~l~~s~-d~~~l~s~s~Dg~i~vwd~~~~~~~~~~---~~~ 935 (1106)
+++|..++.. .++.+- -..-+.|+|+| ++.++++.+.++.|++||..++...... ...
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 9999877653 333210 11235799999 5667777788899999998775431100 000
Q ss_pred ccCCCC---CCCCCCceEEEcCCCcEEEE--EeCCeEEEEecCCceEeeec-----------ccCC--------CCCCee
Q 001295 936 IPTGRT---PTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQW-----------VPRE--------SSAPIT 991 (1106)
Q Consensus 936 ~~~~~~---~~~~~i~~~~~s~dg~~l~~--~~d~~v~i~d~~~~~~~~~~-----------~~~~--------h~~~v~ 991 (1106)
...+.. ..-.....++++|+|+.|.+ ..++.|++||+.++...... .... .-....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 000100 01134578999999986655 46789999999876532110 0000 011346
Q ss_pred EEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCc-ccCCCC--CCCCccceEEEEeCCCCCEEEEEeCCCcEEEEe
Q 001295 992 HATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA-YLPAGV--SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFE 1068 (1106)
Q Consensus 992 ~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~-~~~~~~--~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~ 1068 (1106)
.++++++|.++++-+.+++|++||..++.......... ....|. ...--.|..+++++ +|+++++-+.++.|++||
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 89999999988888899999999999887664332110 000110 00112456899998 689999999999999999
Q ss_pred ecCCC
Q 001295 1069 PLESE 1073 (1106)
Q Consensus 1069 ~~~~~ 1073 (1106)
+.+++
T Consensus 887 ~~~~~ 891 (1057)
T PLN02919 887 LNKGE 891 (1057)
T ss_pred CCCCc
Confidence 99876
No 278
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.03 E-value=2.5e-07 Score=104.32 Aligned_cols=234 Identities=15% Similarity=0.088 Sum_probs=135.0
Q ss_pred CCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEc
Q 001295 362 QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSY 441 (1106)
Q Consensus 362 g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~ 441 (1106)
+.+ +++++.+|.|.-+|..+|+.+-...+. ..... ... .++..+++++.++.+..+|.
T Consensus 65 ~~~-v~v~~~~g~v~a~d~~tG~~~W~~~~~----------------~~~~~---~p~--v~~~~v~v~~~~g~l~ald~ 122 (377)
T TIGR03300 65 GGK-VYAADADGTVVALDAETGKRLWRVDLD----------------ERLSG---GVG--ADGGLVFVGTEKGEVIALDA 122 (377)
T ss_pred CCE-EEEECCCCeEEEEEccCCcEeeeecCC----------------CCccc---ceE--EcCCEEEEEcCCCEEEEEEC
Confidence 443 777788899999999999887542221 00011 111 25778888889999999999
Q ss_pred cCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEe-ccccCCceEEEE
Q 001295 442 HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC-PHHKENIQFIFS 520 (1106)
Q Consensus 442 ~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~-~~~~~~~~~l~s 520 (1106)
.+|+.+.... + .+.+.+.-.. .+. .++.++.++.|..||.++|+.+..+......+.... -.+.-.+..++.
T Consensus 123 ~tG~~~W~~~-~---~~~~~~~p~v-~~~--~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~ 195 (377)
T TIGR03300 123 EDGKELWRAK-L---SSEVLSPPLV-ANG--LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV 195 (377)
T ss_pred CCCcEeeeec-c---CceeecCCEE-ECC--EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE
Confidence 9998764321 1 1222221111 233 466677799999999999998877654332211000 000001136778
Q ss_pred EecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcce
Q 001295 521 TALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL 600 (1106)
Q Consensus 521 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 600 (1106)
+..+|.+..+|..+++......... +.+...... .........+ .+..+++++.+|.++.||..+|+.
T Consensus 196 ~~~~g~v~ald~~tG~~~W~~~~~~---------~~g~~~~~~-~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~ 263 (377)
T TIGR03300 196 GFAGGKLVALDLQTGQPLWEQRVAL---------PKGRTELER-LVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRV 263 (377)
T ss_pred ECCCCEEEEEEccCCCEeeeecccc---------CCCCCchhh-hhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcE
Confidence 8889999999998876554332110 000000000 0000000001 134677788899999999999987
Q ss_pred eEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 601 LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 601 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
+....... ..... .++..+++++.+|.+..+|..++
T Consensus 264 ~W~~~~~~----~~~p~--~~~~~vyv~~~~G~l~~~d~~tG 299 (377)
T TIGR03300 264 LWKRDASS----YQGPA--VDDNRLYVTDADGVVVALDRRSG 299 (377)
T ss_pred EEeeccCC----ccCce--EeCCEEEEECCCCeEEEEECCCC
Confidence 76654211 11122 24566777777888888877665
No 279
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.03 E-value=2.5e-08 Score=97.40 Aligned_cols=192 Identities=18% Similarity=0.110 Sum_probs=133.0
Q ss_pred CCCCcEEEEEec---CCCeEEEEEeccCcEEEEecCCcceeEE-eeeeeeccCcCCccccccccCCCCcCeEEEEEccCC
Q 001295 349 QGSSPMSMDFHP---VQQTLLLVGTNVGDIGLWEVGSRERLVL-RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 424 (1106)
Q Consensus 349 h~~~v~~~~~sp---~g~~llatg~~dg~i~iwd~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 424 (1106)
.+..+..+.|.- +|...++-+-.+|.|.++.....+.... +.+..-+ -....-.++.|++.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~k--------------i~~~~~lslD~~~~~ 133 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKK--------------ISVVEALSLDISTSG 133 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhh--------------hhheeeeEEEeeccC
Confidence 345566666653 4554566666778888887653322211 1111000 001134578899999
Q ss_pred CEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCC-CCceeEE-EeccCC
Q 001295 425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYI-FEGHEA 502 (1106)
Q Consensus 425 ~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~-~~~h~~ 502 (1106)
..++++..+|.+.+-+..... ++..+.+++|....+...|+..... ++.+||+|+.+..||++ .++.+.. .+.|..
T Consensus 134 ~~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~ 211 (339)
T KOG0280|consen 134 TKIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS 211 (339)
T ss_pred ceEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeec
Confidence 999999999998865554432 3444578899999999999987776 89999999999999999 4455544 556889
Q ss_pred CeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCC
Q 001295 503 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 557 (1106)
Q Consensus 503 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 557 (1106)
.|.++.-++ +.+.++++|+.|-.|++||.++..+...-....+.|..+..+|.-
T Consensus 212 GV~SI~ss~-~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~ 265 (339)
T KOG0280|consen 212 GVVSIYSSP-PKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEI 265 (339)
T ss_pred ceEEEecCC-CCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchh
Confidence 999987554 345799999999999999999776655444445667777666643
No 280
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.01 E-value=1.8e-09 Score=128.67 Aligned_cols=198 Identities=19% Similarity=0.348 Sum_probs=155.8
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 428 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 428 (1106)
+-..|.++.=+|...+ .+||+.||.|++|.+..+..+.. |+ -.|. ..|+.+.|+.+|..+.
T Consensus 2207 ~v~~v~r~~sHp~~~~-Yltgs~dgsv~~~~w~~~~~v~~-----~r------------t~g~-s~vtr~~f~~qGnk~~ 2267 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPY-YLTGSQDGSVRMFEWGHGQQVVC-----FR------------TAGN-SRVTRSRFNHQGNKFG 2267 (2439)
T ss_pred ccCceeeecCCCCCce-EEecCCCceEEEEeccCCCeEEE-----ee------------ccCc-chhhhhhhcccCCcee
Confidence 4578889999999985 88999999999999988877653 22 1333 7899999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEec---CCCcEEEEeCCC-CceeEEEeccCCCe
Q 001295 429 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG---DDKTIKVWDATN-GAKQYIFEGHEAPV 504 (1106)
Q Consensus 429 s~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~---~d~~i~iwd~~~-~~~~~~~~~h~~~v 504 (1106)
.+..||.+.+|.+.. +.....+.|.....++.|-. . .+++++ +++.+.+||..- +..-..-..|.+.+
T Consensus 2268 i~d~dg~l~l~q~~p----k~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~ga 2339 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQASP----KPYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGA 2339 (2439)
T ss_pred eeccCCceeecccCC----cceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceeeeecCCCc
Confidence 999999999999872 34446778999999999976 3 566665 578999999652 22222237899999
Q ss_pred EEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEE
Q 001295 505 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 584 (1106)
Q Consensus 505 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 584 (1106)
+++++.|.. ++|++||.+|.|++||++..+.+..+.. + + ...++++|
T Consensus 2340 T~l~~~P~~--qllisggr~G~v~l~D~rqrql~h~~~~---------~---------------------~-~~~~f~~~ 2386 (2439)
T KOG1064|consen 2340 TVLAYAPKH--QLLISGGRKGEVCLFDIRQRQLRHTFQA---------L---------------------D-TREYFVTG 2386 (2439)
T ss_pred eEEEEcCcc--eEEEecCCcCcEEEeehHHHHHHHHhhh---------h---------------------h-hhheeecc
Confidence 999987655 7999999999999999997666554443 1 1 12369999
Q ss_pred ECCCeEEEEECCCcceeEEEcc
Q 001295 585 GDDFSIKFWDMDSVQLLTSIDA 606 (1106)
Q Consensus 585 ~~d~~i~iwd~~~~~~~~~~~~ 606 (1106)
+..|.++||++..-..+..+..
T Consensus 2387 ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2387 SSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred CcccceEEEEccccchhhcCch
Confidence 9999999999988877777653
No 281
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.99 E-value=4.3e-09 Score=125.66 Aligned_cols=213 Identities=12% Similarity=0.259 Sum_probs=153.5
Q ss_pred EEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccC
Q 001295 580 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT 659 (1106)
Q Consensus 580 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 659 (1106)
.+.....++...-|..+.+.....-. ...|.++.-+|...+.++|+.||.+++|....+
T Consensus 2182 ~~~~~n~~~~~~tq~~~~~~~~~k~~----v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~----------------- 2240 (2439)
T KOG1064|consen 2182 RFTPSNLPWLGSTQTSRGASVMIKHP----VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHG----------------- 2240 (2439)
T ss_pred cCCcccCCccccceecccceeEeecc----cCceeeecCCCCCceEEecCCCceEEEEeccCC-----------------
Confidence 34444455555556554333222211 335778888888889999999999999976554
Q ss_pred CCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCc
Q 001295 660 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 739 (1106)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 739 (1106)
..|..|+..
T Consensus 2241 --------------------------------------------------------~~v~~~rt~--------------- 2249 (2439)
T KOG1064|consen 2241 --------------------------------------------------------QQVVCFRTA--------------- 2249 (2439)
T ss_pred --------------------------------------------------------CeEEEeecc---------------
Confidence 233444433
Q ss_pred cccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEe
Q 001295 740 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 819 (1106)
Q Consensus 740 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s 819 (1106)
...+++.+.|+.+|+.+..+..||.+.+|......+ +....|......+.|-
T Consensus 2250 --g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~--------------------------~s~qchnk~~~Df~Fi 2301 (2439)
T KOG1064|consen 2250 --GNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPY--------------------------TSWQCHNKALSDFRFI 2301 (2439)
T ss_pred --CcchhhhhhhcccCCceeeeccCCceeecccCCcce--------------------------eccccCCccccceeee
Confidence 237888999999999999999999999997641100 1112377777777776
Q ss_pred cCCCEEEEEe----CCeEEEEEcCC---CceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecC
Q 001295 820 KNDSYVMSAS----GGKISLFNMMT---FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG 892 (1106)
Q Consensus 820 ~~~~~l~~~s----dg~i~vwd~~~---~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~ 892 (1106)
. ..+++++ ++.+.+||.-- ..++. ..|.+.++++++.| ..++|++|+.+|.|++||+...++++.++.
T Consensus 2302 ~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql~h~~~~ 2376 (2439)
T KOG1064|consen 2302 G--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQLRHTFQA 2376 (2439)
T ss_pred e--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHHHHHhhh
Confidence 5 5666654 47899999752 22233 77999999999999 899999999999999999998777766664
Q ss_pred cccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcc
Q 001295 893 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 927 (1106)
Q Consensus 893 h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~ 927 (1106)
+. ...++++++..|.++||++....
T Consensus 2377 ---------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2377 ---------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred ---------hh-hhheeeccCcccceEEEEccccc
Confidence 33 46789999999999999998753
No 282
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=4e-09 Score=110.72 Aligned_cols=210 Identities=13% Similarity=0.195 Sum_probs=153.5
Q ss_pred CCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCC-------CceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEE
Q 001295 808 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT-------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 879 (1106)
Q Consensus 808 ~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~-------~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iw 879 (1106)
+|...|..++--.+.+.+++++ |.+|++|.++. ..+..++..|..+|..+.|-. +.++++++ ||-|++|
T Consensus 733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~Sc--D~giHlW 809 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIASC--DGGIHLW 809 (1034)
T ss_pred CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeeec--cCcceee
Confidence 3888898888777777888888 99999999863 347788899999999999998 88888765 8899999
Q ss_pred EeecceEEEEecC--cccCeeEEEEec--CCCEEEEE-cCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcC
Q 001295 880 NVRVDEVKSKLKG--HSKRITGLAFSH--ALNVLVSS-GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 954 (1106)
Q Consensus 880 d~~~~~~~~~l~~--h~~~V~~l~~s~--d~~~l~s~-s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 954 (1106)
|.--++++..+.. ..+.+..+..-+ |...++.+ +...+|+++|.+.++-..........+ ....+++++..+
T Consensus 810 DPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~---Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 810 DPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPG---PNALTRAIAVAD 886 (1034)
T ss_pred cccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCC---CchheeEEEecc
Confidence 9888877664321 122233333333 34444444 788999999998865433222222222 234678999999
Q ss_pred CCcEEEEE-eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEE-EEcCCceeEEeeC
Q 001295 955 DQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV-FSAANLKLRCRIN 1026 (1106)
Q Consensus 955 dg~~l~~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~v-wd~~~~~~~~~~~ 1026 (1106)
.|++++++ +.|.|.+.|.++|..+..|..- .-....++ .|..+.|+....|.++.| |-.-+|....+.+
T Consensus 887 ~GN~lAa~LSnGci~~LDaR~G~vINswrpm--ecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~k 957 (1034)
T KOG4190|consen 887 KGNKLAAALSNGCIAILDARNGKVINSWRPM--ECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDK 957 (1034)
T ss_pred CcchhhHHhcCCcEEEEecCCCceeccCCcc--cchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccC
Confidence 99999995 8999999999999999998731 22233333 466678888888999999 9988887766555
No 283
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.89 E-value=1.5e-08 Score=110.48 Aligned_cols=277 Identities=12% Similarity=0.167 Sum_probs=176.5
Q ss_pred ccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeE----------------------------E--eeeeeecc
Q 001295 347 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLV----------------------------L--RNFKVWDL 396 (1106)
Q Consensus 347 ~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~----------------------------~--~~~~~~d~ 396 (1106)
+.-...+.++.++|.|+. +|.++.-|. .|-|+...-... . ..--+|++
T Consensus 21 l~v~~~~~a~si~p~grd-i~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnl 98 (1081)
T KOG0309|consen 21 LKVDGGFNAVSINPSGRD-IVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNL 98 (1081)
T ss_pred EEecCcccceeeccccch-hhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhh
Confidence 345678888899999886 666665443 233333211000 0 01124555
Q ss_pred CcCCccccccccCCCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEE
Q 001295 397 GACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVI 475 (1106)
Q Consensus 397 ~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~ 475 (1106)
.........-.+.||+..|+.+.|.| ....||+++.|..|..||+.+... .+..+..-...-..++|+-... .+.
T Consensus 99 A~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--p~ys~~~w~s~asqVkwnyk~p--~vl 174 (1081)
T KOG0309|consen 99 AKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQVKWNYKDP--NVL 174 (1081)
T ss_pred hcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc--ceeeeecccccCceeeecccCc--chh
Confidence 55555555556889999999999999 567899999999999999998653 2233333445678899987776 466
Q ss_pred EecCCCcEEEEeCCCC-ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEee-CCCCeeEEEEE
Q 001295 476 TCGDDKTIKVWDATNG-AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAY 553 (1106)
Q Consensus 476 s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~ 553 (1106)
..+..+.|++||.+.| .++..+++|...|+.+.|..... ..+.+++.||+|++||........... ....++..-.+
T Consensus 175 asshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~ 253 (1081)
T KOG0309|consen 175 ASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRY 253 (1081)
T ss_pred hhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcceeccc
Confidence 6777889999999865 56789999999999998865443 468899999999999998654433222 22334444455
Q ss_pred ecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCC-cceeEEEccCCCCCCcCeEEEccC----------C
Q 001295 554 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKD----------G 622 (1106)
Q Consensus 554 s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~----------~ 622 (1106)
.|-|.-.+ +-..-.++.+..-.-++....|+..+ .+.++.|.+|.. .|....|... .
T Consensus 254 ~Pfg~g~~----------~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D--~V~eFlWR~r~e~~~d~d~rd 321 (1081)
T KOG0309|consen 254 LPFGEGYC----------IMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD--VVLEFLWRKRKECDGDYDSRD 321 (1081)
T ss_pred cccCceeE----------eccccCCeeeeeccccchhhhhccccCCcceeeecCcch--HHHHHhhhhcccccCCCCccc
Confidence 55443110 10111111111122233344555544 457888887743 4544444332 2
Q ss_pred CEEEEEeCCCcEEEEEccCC
Q 001295 623 CLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 623 ~~l~~~~~dg~i~iwd~~~~ 642 (1106)
-.|++=+.|.++++|-+.+.
T Consensus 322 fQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 322 FQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred eeEEEeecCCceEeeeccHH
Confidence 36899999999999988653
No 284
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.89 E-value=1.1e-06 Score=109.85 Aligned_cols=276 Identities=15% Similarity=0.183 Sum_probs=162.7
Q ss_pred EEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEe-C
Q 001295 354 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY-S 432 (1106)
Q Consensus 354 ~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-~ 432 (1106)
..+++++++..++++-+.++.|.+||... ..+... . ....... .....-..+-..-..+++.+++..|.++. .
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~i--g--~~g~~G~-~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQI--G--STGEEGL-RDGSFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEE--c--cCCCcCC-CCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 57899986554788878889999999864 332210 0 0000000 00000011122457899999888766654 4
Q ss_pred CCeEEEEEccCCceeeeeee-------eccc-------cCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEe
Q 001295 433 RHIVQIYSYHGGDEVRQHLE-------IDAH-------VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 498 (1106)
Q Consensus 433 d~~v~iwd~~~~~~~~~~~~-------l~~h-------~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 498 (1106)
++.|+++|..++.. ..+.. +.+. -..-..++|+|++.. ++++.+.++.|++||..++... .+.
T Consensus 645 n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~-LyVad~~~~~I~v~d~~~g~v~-~~~ 721 (1057)
T PLN02919 645 NHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEK-VYIAMAGQHQIWEYNISDGVTR-VFS 721 (1057)
T ss_pred CceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCe-EEEEECCCCeEEEEECCCCeEE-EEe
Confidence 57899999887643 21100 0000 112357999995543 6788888899999998877542 222
Q ss_pred cc---------------CCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCC-eeEEEEEe-cCCCeEE
Q 001295 499 GH---------------EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR-WCTTMAYS-ADGTRTY 561 (1106)
Q Consensus 499 ~h---------------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s-~~~~~~~ 561 (1106)
+. -.....++++++.+ .++++.+.++.|++||+.++.......+... ......|. .+|.. .
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~-~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g-~ 799 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLK-ELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVG-S 799 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeCCCC-EEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCch-h
Confidence 11 12344577654432 3666777789999999986543211110000 00000110 01100 0
Q ss_pred EeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCC------------CCCCcCeEEEccCCCEEEEEe
Q 001295 562 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG------------GLPASPRIRFNKDGCLLAVST 629 (1106)
Q Consensus 562 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------------~~~~v~~v~~s~~~~~l~~~~ 629 (1106)
. ..-.....++++++|+.+++-..++.|++||..++....... .+ .......++++++|+++++-+
T Consensus 800 ~-~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG-~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt 877 (1057)
T PLN02919 800 E-VLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG-TGKAGFKDGKALKAQLSEPAGLALGENGRLFVADT 877 (1057)
T ss_pred h-hhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEec-cCCcCCCCCcccccccCCceEEEEeCCCCEEEEEC
Confidence 0 001123467888999888888899999999998876554331 11 122456899999999999989
Q ss_pred CCCcEEEEEccCC
Q 001295 630 NDNGIKILATSDG 642 (1106)
Q Consensus 630 ~dg~i~iwd~~~~ 642 (1106)
.++.|++||+.++
T Consensus 878 ~Nn~Irvid~~~~ 890 (1057)
T PLN02919 878 NNSLIRYLDLNKG 890 (1057)
T ss_pred CCCEEEEEECCCC
Confidence 9999999999886
No 285
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.87 E-value=2.6e-08 Score=102.03 Aligned_cols=167 Identities=18% Similarity=0.169 Sum_probs=114.0
Q ss_pred CCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEE-
Q 001295 351 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV- 429 (1106)
Q Consensus 351 ~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las- 429 (1106)
-.++.+.+++.|+ |+|++..+....++++..... ..+.++.. .... .-+++.|-.+......
T Consensus 63 ~a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~~---------~v~~---~~~ai~~~~~~~sv~v~ 125 (390)
T KOG3914|consen 63 LAPALVLTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDVS---------CVPK---RPTAISFIREDTSVLVA 125 (390)
T ss_pred ccccccccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeEe---------eccc---CcceeeeeeccceEEEE
Confidence 3455667788888 688888887777777664432 11111110 0111 2233334344444443
Q ss_pred --EeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEE-eccCCCeEE
Q 001295 430 --AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYS 506 (1106)
Q Consensus 430 --~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~ 506 (1106)
.+....+.+|....+.+. .+-||-..+..++|+||++ +++++..|..|+|-....--.+..| -||+..|..
T Consensus 126 dkagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~ 199 (390)
T KOG3914|consen 126 DKAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVST 199 (390)
T ss_pred eecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheee
Confidence 445566777777654433 2568999999999999999 8999999999999877665555544 579999999
Q ss_pred EeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeC
Q 001295 507 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA 543 (1106)
Q Consensus 507 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 543 (1106)
++...+ ..|+++|.|++|++||+.+++.+.++..
T Consensus 200 isl~~~---~~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 200 ISLTDN---YLLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred eeeccC---ceeeecCCCCcEEEEecccCCcccccch
Confidence 986433 5799999999999999999888765443
No 286
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=2e-07 Score=103.34 Aligned_cols=112 Identities=12% Similarity=0.297 Sum_probs=84.7
Q ss_pred CCcEEEEEecCCCeEEEEEec----cCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCE
Q 001295 351 SSPMSMDFHPVQQTLLLVGTN----VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 426 (1106)
Q Consensus 351 ~~v~~~~~sp~g~~llatg~~----dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 426 (1106)
..-+-..|+|... ++|+++- .|.|.|+- ++|+..... ...- .+++++|+|..-.
T Consensus 16 avsti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~V-----------------t~P~---hatSLCWHpe~~v 73 (1416)
T KOG3617|consen 16 AVSTISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDV-----------------TYPV---HATSLCWHPEEFV 73 (1416)
T ss_pred ccccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCccc-----------------ccce---ehhhhccChHHHH
Confidence 3345567899888 5877764 47888884 455533210 1122 3566999999999
Q ss_pred EEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCC
Q 001295 427 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 489 (1106)
Q Consensus 427 las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~ 489 (1106)
||.|-.-|.+.+|...+.+.- .....|..+|..+.||++|. .++|+..-|.|.+|...
T Consensus 74 La~gwe~g~~~v~~~~~~e~h---tv~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 74 LAQGWEMGVSDVQKTNTTETH---TVVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred HhhccccceeEEEecCCceee---eeccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEee
Confidence 999999999999998875432 23457999999999999999 89999999999999865
No 287
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.82 E-value=1.2e-06 Score=86.50 Aligned_cols=206 Identities=16% Similarity=0.172 Sum_probs=138.1
Q ss_pred EEEecCCCEEEEEeCCeEEEEEcCCC--ceeee---ecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEe
Q 001295 816 FALSKNDSYVMSASGGKISLFNMMTF--KTMAT---FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL 890 (1106)
Q Consensus 816 l~~s~~~~~l~~~sdg~i~vwd~~~~--~~~~~---~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l 890 (1106)
++.+.||++||+..|..|.|=..++. ..+.+ -+.....-+.++||| |+.+||.+...|+|++||+....+ ..+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~l-f~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSEL-FVI 80 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEeccccee-EEc
Confidence 67789999999999988888766531 12222 222334568899999 999999999999999999875433 233
Q ss_pred cC-------cccCeeEEEEecCC------CEEEEEcCCCcEEEEeCCCcc---cccceeecccCCCCCCCCCCceEEEcC
Q 001295 891 KG-------HSKRITGLAFSHAL------NVLVSSGADSQLCVWSSDGWE---KQKNRFLQIPTGRTPTAQSDTRVQFHQ 954 (1106)
Q Consensus 891 ~~-------h~~~V~~l~~s~d~------~~l~s~s~Dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~s~ 954 (1106)
.. -+..|.+|.|.+-. ..|.....+|.++=|-+..+. -............. ..|.++.++|
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp---~Gi~~~vy~p 157 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYP---HGINSAVYHP 157 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCC---CceeEEEEcC
Confidence 22 23567777775432 246667778888877664322 11122222222222 5889999999
Q ss_pred CCcEEEEEe----C--------CeEEEEecCCceEe---------------------eec-----c-cCCCCCCeeEEEE
Q 001295 955 DQIHFLVVH----E--------TQLAIFETTKLECV---------------------KQW-----V-PRESSAPITHATF 995 (1106)
Q Consensus 955 dg~~l~~~~----d--------~~v~i~d~~~~~~~---------------------~~~-----~-~~~h~~~v~~l~~ 995 (1106)
..++|++++ + -.+..|.+-++..- +.. . .......|..|..
T Consensus 158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl 237 (282)
T PF15492_consen 158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL 237 (282)
T ss_pred CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE
Confidence 988888731 1 14666765333210 000 0 0112567999999
Q ss_pred CCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295 996 SCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus 996 s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
||||+.||+...+|.|.+|++.+.++.....
T Consensus 238 SPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 238 SPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred CCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 9999999999999999999999998887776
No 288
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=3.6e-08 Score=103.77 Aligned_cols=246 Identities=11% Similarity=0.108 Sum_probs=162.3
Q ss_pred ccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcc-eeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCC
Q 001295 347 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE-RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 425 (1106)
Q Consensus 347 ~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 425 (1106)
.+|+..|.+++--.+... +++++.|++|++|.+.... .+.+ ....-++..|+.+|..+.|-.|-+
T Consensus 732 ~GH~~~iRai~AidNENS-FiSASkDKTVKLWSik~EgD~~~t-------------saCQfTY~aHkk~i~~igfL~~lr 797 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENS-FISASKDKTVKLWSIKPEGDEIGT-------------SACQFTYQAHKKPIHDIGFLADLR 797 (1034)
T ss_pred cCcHHHhHHHHhcccccc-eeeccCCceEEEEEeccccCcccc-------------ceeeeEhhhccCcccceeeeeccc
Confidence 359999998876666664 8899999999999987422 1110 001114689999999999999999
Q ss_pred EEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCC-CCceEEEEecCCCcEEEEeCCCCceeEEEe-----c
Q 001295 426 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP-NKQLCVITCGDDKTIKVWDATNGAKQYIFE-----G 499 (1106)
Q Consensus 426 ~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~ 499 (1106)
+++++ ||-|.+||.--|..+.++..-..| +.+..+.--++ .+.++++.++...+|+++|.+.++-...++ +
T Consensus 798 ~i~Sc--D~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~ 874 (1034)
T KOG4190|consen 798 SIASC--DGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPG 874 (1034)
T ss_pred eeeec--cCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCC
Confidence 99876 788999998877766543222223 23333333344 444355556889999999999888776665 3
Q ss_pred cCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCC
Q 001295 500 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 579 (1106)
Q Consensus 500 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~ 579 (1106)
..+.+.++++.+. |+.++.+-..|.|.+.|.+++..+..+..-.-....++. |.++
T Consensus 875 Pna~~R~iaVa~~--GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa----------------------psdq 930 (1034)
T KOG4190|consen 875 PNALTRAIAVADK--GNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA----------------------PSDQ 930 (1034)
T ss_pred CchheeEEEeccC--cchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC----------------------chhH
Confidence 3456788886544 478999999999999999987765544433222222221 2233
Q ss_pred EEEEEECCCeEEE-EECCCcceeEEEccCCCCCCcCeEEEc-cCCCEEEEEeCCCcEEEEE
Q 001295 580 RFLAAGDDFSIKF-WDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTNDNGIKILA 638 (1106)
Q Consensus 580 ~l~~~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~dg~i~iwd 638 (1106)
.++....|.++.+ |...+|......+.... + ..|- .-|.-|++....+.+.+|.
T Consensus 931 ~L~~saldHslaVnWhaldgimh~q~kpppe--p---ahflqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 931 ALAQSALDHSLAVNWHALDGIMHLQDKPPPE--P---AHFLQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred HHHhhcccceeEeeehhcCCeeeeccCCCCc--c---hhhhhccCceeEEeccCcEEEEEe
Confidence 4677777888888 98877765554442211 1 1121 1356677777777777774
No 289
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.80 E-value=1.4e-06 Score=97.71 Aligned_cols=157 Identities=9% Similarity=0.000 Sum_probs=97.8
Q ss_pred CCcEEEEEecCCCeEEEEEecc---CcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEE
Q 001295 351 SSPMSMDFHPVQQTLLLVGTNV---GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 427 (1106)
Q Consensus 351 ~~v~~~~~sp~g~~llatg~~d---g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 427 (1106)
..+....|||||+++++..+.+ ..|.++|+.+++... +....+.+....|||||+.|
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~~SPDG~~l 247 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSDVSKDGSKL 247 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeEECCCCCEE
Confidence 3778999999998645543333 469999998887643 22334556778899999988
Q ss_pred EEEe-C--CCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCC-CcEEEEeCCCCceeEEEeccCCC
Q 001295 428 GVAY-S--RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-KTIKVWDATNGAKQYIFEGHEAP 503 (1106)
Q Consensus 428 as~~-~--d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~h~~~ 503 (1106)
+... . +..|.++|+.+++..+ +..+........|+|||+.+++++...+ ..|.+.|+.+++..+.... ...
T Consensus 248 a~~~~~~g~~~Iy~~dl~~g~~~~----LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~ 322 (419)
T PRK04043 248 LLTMAPKGQPDIYLYDTNTKTLTQ----ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN 322 (419)
T ss_pred EEEEccCCCcEEEEEECCCCcEEE----cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc
Confidence 7643 2 3568888988876432 3334433455689999997544443222 2688889888776443321 111
Q ss_pred eEEEeccccCCceEEEEEecC---------CeEEEEeCCCCC
Q 001295 504 VYSVCPHHKENIQFIFSTALD---------GKIKAWLYDNLG 536 (1106)
Q Consensus 504 v~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~ 536 (1106)
...|+ ++|+.|+..+.. ..|.+.|+.++.
T Consensus 323 --~~~~S--PDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 323 --NSSVS--TYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY 360 (419)
T ss_pred --CceEC--CCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence 13554 455666655543 256666776543
No 290
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.79 E-value=3.5e-06 Score=94.52 Aligned_cols=207 Identities=8% Similarity=0.021 Sum_probs=126.8
Q ss_pred eEEEEEcCCCceeeeecCCCCCeeEEEEecCCCc-eEEEeeC---CCcEEEEEeecceEEEEecCcccCeeEEEEecCCC
Q 001295 832 KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMD---DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN 907 (1106)
Q Consensus 832 ~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~-~la~g~~---dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~ 907 (1106)
.|.+-|..... .+.+.... ......||| |++ .++..+. +..|+++|+.+++..... ...+......|||||+
T Consensus 170 ~l~~~d~dg~~-~~~~~~~~-~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKGG-LNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGS 245 (419)
T ss_pred eEEEECCCCCc-eeEEccCC-CeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCC
Confidence 45555554433 33333233 678899999 676 4654433 347999999888654333 3455566788999998
Q ss_pred EEEE-EcCC--CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCC----eEEEEecCCceEeee
Q 001295 908 VLVS-SGAD--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET----QLAIFETTKLECVKQ 980 (1106)
Q Consensus 908 ~l~s-~s~D--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~----~v~i~d~~~~~~~~~ 980 (1106)
.|+. .+.+ ..|.++++.+++.. .+....+ ......|+|||+.|+...+. .|.++|+.+++..+.
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~---~LT~~~~------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLT---QITNYPG------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEE---EcccCCC------ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence 7764 3334 45777788775421 1221111 12456899999998885443 799999988877554
Q ss_pred cccCCCCCCeeEEEECCCCCEEEEEEcC---------CeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCC
Q 001295 981 WVPRESSAPITHATFSCDSQLVYACFLD---------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1051 (1106)
Q Consensus 981 ~~~~~h~~~v~~l~~s~d~~~l~t~s~D---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d 1051 (1106)
... +. . ...|||||++|+..+.. ..|++.|++++... .+.. + .. .. ...|+| |
T Consensus 317 t~~-g~--~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~------~--~~-~~--~p~~SP-D 378 (419)
T PRK04043 317 VFH-GK--N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTA------N--GV-NQ--FPRFSS-D 378 (419)
T ss_pred ccC-CC--c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCC------C--CC-cC--CeEECC-C
Confidence 331 11 1 24899999998876644 36888899888653 3321 1 01 11 478999 6
Q ss_pred CCEEEEEeCC-CcEEEEee
Q 001295 1052 PNEFALGLSD-GGVHVFEP 1069 (1106)
Q Consensus 1052 ~~~l~t~~~D-g~v~vW~~ 1069 (1106)
|+.++....+ +.-.+|-+
T Consensus 379 G~~I~f~~~~~~~~~L~~~ 397 (419)
T PRK04043 379 GGSIMFIKYLGNQSALGII 397 (419)
T ss_pred CCEEEEEEccCCcEEEEEE
Confidence 8876654433 44334444
No 291
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.76 E-value=1.6e-06 Score=83.85 Aligned_cols=243 Identities=13% Similarity=0.076 Sum_probs=153.3
Q ss_pred CCEEEEEe-CCeEEEEEcCCCcee-eeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeE
Q 001295 822 DSYVMSAS-GGKISLFNMMTFKTM-ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 899 (1106)
Q Consensus 822 ~~~l~~~s-dg~i~vwd~~~~~~~-~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 899 (1106)
.-+|+.|+ .|...+|...+.+.. +....+...|+-+.---+...-+..++.|.++++.++.-+.....+....-.+.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 34777776 799999998865433 3333344433322111112234566788889999888765443333222233889
Q ss_pred EEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCceEe
Q 001295 900 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECV 978 (1106)
Q Consensus 900 l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~~~ 978 (1106)
+++++|++++++.++...|..|.++...... +.+... +....--+..|+.....+|+ ..||.+.|||++.....
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~---~~~~~a--~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYI---ENIYEA--PTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCcccee---eeeEec--ccCCCceeeeeccCcceEEEEecCCcEEEEEecccccc
Confidence 9999999999999999999999988633211 111111 11123467899999999998 59999999999876543
Q ss_pred eecc---cCCCCCCeeEEEECCCCCE--EEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCC
Q 001295 979 KQWV---PRESSAPITHATFSCDSQL--VYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1053 (1106)
Q Consensus 979 ~~~~---~~~h~~~v~~l~~s~d~~~--l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~ 1053 (1106)
.... ...|.+.+..+.|++-|.. |+..-.-+.+.|-|+.+++....+.+.......|....+. ...|.. ++.
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~if--gt~f~~-~n~ 315 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIF--GTNFNN-ENE 315 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccc--cccccC-CCc
Confidence 3221 2358999999999987654 4444445789999999998877766433332222233344 566665 344
Q ss_pred EEEEEeCCCcEEEEeecCCC
Q 001295 1054 EFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus 1054 ~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
.+.+... -.+.-|++....
T Consensus 316 s~~v~~e-~~~ae~ni~srs 334 (344)
T KOG4532|consen 316 SNDVKNE-LQGAEYNILSRS 334 (344)
T ss_pred ccccccc-hhhheeeccccc
Confidence 4444443 335667765533
No 292
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.76 E-value=0.0012 Score=76.44 Aligned_cols=593 Identities=11% Similarity=0.103 Sum_probs=288.2
Q ss_pred eccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC--
Q 001295 346 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-- 423 (1106)
Q Consensus 346 ~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd-- 423 (1106)
.++..+-..|+.+-++| ++.+||.-|.=.+-.+.+-...... ...+. .+ ..=++|..++.-.+
T Consensus 302 ~lge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gsy----------~~ile--t~-~NLgPI~Dm~Vvd~d~ 366 (1096)
T KOG1897|consen 302 YLGETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGSY----------VVILE--TF-VNLGPIVDMCVVDLDR 366 (1096)
T ss_pred ecCCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCch----------hhhhh--hc-ccccceeeEEEEeccc
Confidence 34556667778788888 5888888776566555443222100 00000 11 11237777776542
Q ss_pred --CCEEEEEe---CCCeEEEEEccCCceeeeeeeeccccCCeeEEE--EcCCCCceEEEEecCCCcEEEEeCCCCceeEE
Q 001295 424 --GSLFGVAY---SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIA--FSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 496 (1106)
Q Consensus 424 --g~~las~~---~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~--~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 496 (1106)
+..+++|+ .||+++|..-.-+-.......+.| -..++.+. +.++-.. +++.+-- +.-++..+...-....
T Consensus 367 q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~-~eTrvl~i~~e~ee~~ 443 (1096)
T KOG1897|consen 367 QGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSFI-SETRVLNISEEVEETE 443 (1096)
T ss_pred cCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEec-cceEEEEEccceEEec
Confidence 23455553 689999986543322222223555 34566776 4443332 3333322 2223333322211111
Q ss_pred EeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcC
Q 001295 497 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 576 (1106)
Q Consensus 497 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~ 576 (1106)
..+.......+..+. -+++.|+=.. ...||+++-. .....+....+..... .+.
T Consensus 444 ~~gf~~~~~Tif~S~-i~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~~~ti~~----------------------~~~ 497 (1096)
T KOG1897|consen 444 DPGFSTDEQTIFCST-INGNQLVQVT-SNSIRLVSSA--GLRSEWRPPGKITIGV----------------------VSA 497 (1096)
T ss_pred cccccccCceEEEEc-cCCceEEEEe-cccEEEEcch--hhhhcccCCCceEEEE----------------------Eee
Confidence 112212222221111 1112222111 2235555432 2222222222221111 122
Q ss_pred CCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccC--C----CEEEEEeCCCcEEEEEccCCchhhhhhc
Q 001295 577 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD--G----CLLAVSTNDNGIKILATSDGIRLLRTFE 650 (1106)
Q Consensus 577 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~--~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 650 (1106)
+...++.++.++.+...++..+. ++....+.-...|.|+.++|- + +++++|..+..+.+.-.......+...
T Consensus 498 n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~- 575 (1096)
T KOG1897|consen 498 NASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHE- 575 (1096)
T ss_pred cceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeee-
Confidence 22247777777777777776655 222222222346889999973 2 378888887776655332221111110
Q ss_pred ccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCc
Q 001295 651 NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPN 730 (1106)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~ 730 (1106)
.... ...|-+ ..+.++ -.+..+|.++..||.+.-|.+.......
T Consensus 576 ---~l~~--------~~iPRS-------------------Il~~~~------e~d~~yLlvalgdG~l~~fv~d~~tg~l 619 (1096)
T KOG1897|consen 576 ---QLSG--------EIIPRS-------------------ILLTTF------EGDIHYLLVALGDGALLYFVLDINTGQL 619 (1096)
T ss_pred ---ccCC--------Cccchh-------------------eeeEEe------eccceEEEEEcCCceEEEEEEEcccceE
Confidence 0000 000000 001111 1236788999999998777665432111
Q ss_pred -cceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCC
Q 001295 731 -QCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP 809 (1106)
Q Consensus 731 -~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 809 (1106)
..+.. .-...++.--.|+..++.-+.+.+|.-..+|.-+ ++++...+.- ..
T Consensus 620 sd~Kk~----~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-----------------------~kLv~spls~-ke 671 (1096)
T KOG1897|consen 620 SDRKKV----TLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-----------------------GKLVYSPLSL-KE 671 (1096)
T ss_pred cccccc----ccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-----------------------CcEEEeccch-HH
Confidence 11100 1134455556676666655555566444444322 1111100000 00
Q ss_pred CCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCce--eeeecCCCCCeeEEEEecCCCceEEEeeC-----------C---
Q 001295 810 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGMD-----------D--- 873 (1106)
Q Consensus 810 ~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~--~~~~~~~~~~v~~l~~s~~d~~~la~g~~-----------d--- 873 (1106)
-..+..+.-+.-...++++..+.+++.-++.-+. ++++. -......+++.+ ...++++.+. .
T Consensus 672 v~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~ 749 (1096)
T KOG1897|consen 672 VNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEV 749 (1096)
T ss_pred hhhhcccccccCCceEEEecCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhhcCCcceE
Confidence 0111111111223467777777777777664322 23333 223455666655 3334433321 1
Q ss_pred CcEEEEEeecceEEEEecCc----ccCeeEEEEecC-CCEEEEEcC----------CCcEEEEeCCCcccccceeecccC
Q 001295 874 SSIQIYNVRVDEVKSKLKGH----SKRITGLAFSHA-LNVLVSSGA----------DSQLCVWSSDGWEKQKNRFLQIPT 938 (1106)
Q Consensus 874 g~v~iwd~~~~~~~~~l~~h----~~~V~~l~~s~d-~~~l~s~s~----------Dg~i~vwd~~~~~~~~~~~~~~~~ 938 (1106)
..++++|-++.+.+...+-. ...|.++.|..| +.++++|.. .|.|.|+.+..............+
T Consensus 750 s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~ 829 (1096)
T KOG1897|consen 750 SFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVK 829 (1096)
T ss_pred EEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeec
Confidence 14667776665544332211 124555668888 677777753 367788877662222111111111
Q ss_pred CCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcC-
Q 001295 939 GRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA- 1017 (1106)
Q Consensus 939 ~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~- 1017 (1106)
| ...+...-...++++-...|++|++.+.+.++.-. .|..++..+...-.|..++.|..=++|.+-...
T Consensus 830 G--------av~aL~~fngkllA~In~~vrLye~t~~~eLr~e~--~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~ 899 (1096)
T KOG1897|consen 830 G--------AVYALVEFNGKLLAGINQSVRLYEWTTERELRIEC--NISNPIIALDLQVKGDEIAVGDLMRSITLLQYKG 899 (1096)
T ss_pred c--------ceeehhhhCCeEEEecCcEEEEEEccccceehhhh--cccCCeEEEEEEecCcEEEEeeccceEEEEEEec
Confidence 1 22233333344555667889999999886665543 678899999999999999999887877765554
Q ss_pred -CceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecC
Q 001295 1018 -NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus 1018 -~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
.|...-.- .++.| -|.+++.+-. ++.++-+..+|.+++-..++
T Consensus 900 ~eg~f~evA--rD~~p-------~Wmtaveil~--~d~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 900 DEGNFEEVA--RDYNP-------NWMTAVEILD--DDTYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred cCCceEEee--hhhCc-------cceeeEEEec--CceEEeecccccEEEEEecC
Confidence 33343221 22333 2333566663 56677777889998887653
No 293
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.75 E-value=8.5e-06 Score=92.20 Aligned_cols=310 Identities=10% Similarity=0.053 Sum_probs=171.2
Q ss_pred EEEEecCCCcEEEEeCCCCceeEEEeccCC--CeE-----EEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCC
Q 001295 473 CVITCGDDKTIKVWDATNGAKQYIFEGHEA--PVY-----SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG 545 (1106)
Q Consensus 473 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~--~v~-----~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 545 (1106)
.++.++.++.+.-+|.++|+.+....-... ... .+.-.+.-.+..++.++.+|.+..+|.++++.+.......
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 466777788999999999998876543220 000 0000011122467788889999999999988877665443
Q ss_pred CeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCC---CcCeEEEccCC
Q 001295 546 RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP---ASPRIRFNKDG 622 (1106)
Q Consensus 546 ~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---~v~~v~~s~~~ 622 (1106)
....+... .+..++.+..++.|+.+|..+|+.+.......... ...+... .+
T Consensus 151 ~~~ssP~v-----------------------~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~ 205 (394)
T PRK11138 151 EALSRPVV-----------------------SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AF 205 (394)
T ss_pred ceecCCEE-----------------------ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--EC
Confidence 21111000 02246777888999999999999988775431100 0011111 23
Q ss_pred CEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccc
Q 001295 623 CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRS 702 (1106)
Q Consensus 623 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1106)
..++.++.+|.+..+|..++.. .-....... .+
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~-~W~~~~~~~---------------~~------------------------------- 238 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQL-IWQQRISQP---------------TG------------------------------- 238 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChh-hheeccccC---------------CC-------------------------------
Confidence 4567778889999999888732 211100000 00
Q ss_pred cCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCc
Q 001295 703 LADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGK 782 (1106)
Q Consensus 703 ~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 782 (1106)
.. ..-+++++ ...++ + .+..+++++.+|.+..+|..+++
T Consensus 239 ----------~~-~~~~~~~~------------------~~sP~----v--~~~~vy~~~~~g~l~ald~~tG~------ 277 (394)
T PRK11138 239 ----------AT-EIDRLVDV------------------DTTPV----V--VGGVVYALAYNGNLVALDLRSGQ------ 277 (394)
T ss_pred ----------cc-chhccccc------------------CCCcE----E--ECCEEEEEEcCCeEEEEECCCCC------
Confidence 00 00000000 00010 0 12345556667777766654321
Q ss_pred cccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCC-CCeeEEEEe
Q 001295 783 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFH 860 (1106)
Q Consensus 783 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-~~v~~l~~s 860 (1106)
.+|....+. ...+.. ++..+..++ +|.+..+|..+++.+....... ....+..+.
T Consensus 278 -------~~W~~~~~~--------------~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~ 334 (394)
T PRK11138 278 -------IVWKREYGS--------------VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY 334 (394)
T ss_pred -------EEEeecCCC--------------ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE
Confidence 134322110 011222 344444444 8999999999987765433211 122233332
Q ss_pred cCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeE-EEEecCCCEEEEEcCCCcEEEEeC
Q 001295 861 PQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG-LAFSHALNVLVSSGADSQLCVWSS 923 (1106)
Q Consensus 861 ~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~-l~~s~d~~~l~s~s~Dg~i~vwd~ 923 (1106)
+ ..|+.++.||.|++.|..+|+.+.+.+-....+.+ ..+ .+..|+.++.||.|..++.
T Consensus 335 --~-g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 335 --N-GYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred --C-CEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 3 46677899999999999999988777544333332 223 2457888899998887754
No 294
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.75 E-value=3.9e-06 Score=83.01 Aligned_cols=216 Identities=13% Similarity=0.118 Sum_probs=135.2
Q ss_pred EEEecCCCceEEEeeCCCcEEEEEeec--ceEEEEecC---cccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccc
Q 001295 857 LAFHPQDNNIIAIGMDDSSIQIYNVRV--DEVKSKLKG---HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 931 (1106)
Q Consensus 857 l~~s~~d~~~la~g~~dg~v~iwd~~~--~~~~~~l~~---h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~ 931 (1106)
++.+. +|++||+- .|..|.|-..++ ..++.+.+- ..-.-..++||||+.+||.+...|+|+++|+.......-
T Consensus 3 ~~~~~-~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 3 LALSS-DGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred eeecC-CCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence 45666 88888865 577787766544 223333332 233456799999999999999999999999986432211
Q ss_pred eeecccCCCCCCCCCCceEEEcCCC-------cEEEEEeCCeEEEEecCC-----ceEeeecccCC-CCCCeeEEEECCC
Q 001295 932 RFLQIPTGRTPTAQSDTRVQFHQDQ-------IHFLVVHETQLAIFETTK-----LECVKQWVPRE-SSAPITHATFSCD 998 (1106)
Q Consensus 932 ~~~~~~~~~~~~~~~i~~~~~s~dg-------~~l~~~~d~~v~i~d~~~-----~~~~~~~~~~~-h~~~v~~l~~s~d 998 (1106)
.... ........+|..+.|-+-- .+|+...+|.++-|-+.. .+.-..+.... +...|.++.+.|.
T Consensus 81 ~p~~--~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 81 PPAM--SFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred Cccc--ccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 1101 0111222466777776532 455667888888777632 22333333333 3779999999999
Q ss_pred CCEEEEEEc----CC-------eEEEEEcCCceeEEeeCC---------------------CcccCCCCCCCCccceEEE
Q 001295 999 SQLVYACFL----DA-------TVCVFSAANLKLRCRINP---------------------SAYLPAGVSSSNVHPLVIA 1046 (1106)
Q Consensus 999 ~~~l~t~s~----Dg-------~i~vwd~~~~~~~~~~~~---------------------~~~~~~~~~~~~v~~~~~~ 1046 (1106)
.++|+.|+. |+ -+..|.+-++........ ..+...+.....|. .+.
T Consensus 159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~--kmS 236 (282)
T PF15492_consen 159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIF--KMS 236 (282)
T ss_pred CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceE--EEE
Confidence 998776652 11 266787654433222110 00111111222244 788
Q ss_pred EeCCCCCEEEEEeCCCcEEEEeecCCC--CccCCC
Q 001295 1047 AHPQEPNEFALGLSDGGVHVFEPLESE--GKWGVP 1079 (1106)
Q Consensus 1047 ~~~~d~~~l~t~~~Dg~v~vW~~~~~~--~~~~~~ 1079 (1106)
.+| ||..||+.+.+|.|.+|+++.-. +.|...
T Consensus 237 lSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 237 LSP-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ECC-CCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 889 79999999999999999998776 666654
No 295
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.73 E-value=4.2e-06 Score=87.80 Aligned_cols=224 Identities=14% Similarity=0.124 Sum_probs=138.2
Q ss_pred CCeEEEEEcCCCceeeeecCC--CCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCC
Q 001295 830 GGKISLFNMMTFKTMATFMPP--PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN 907 (1106)
Q Consensus 830 dg~i~vwd~~~~~~~~~~~~~--~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~ 907 (1106)
+|+|..||..+++.+...... .....+..+ + ++..+++++.++.|+.||..+|+.+.+... ...+.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-P-DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-E-ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-E-eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 588999999999988776531 122222233 2 345666678999999999999998877765 22222222 23455
Q ss_pred EEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceEeeecccCCC
Q 001295 908 VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRES 986 (1106)
Q Consensus 908 ~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~~~~~~~~~h 986 (1106)
.++.++.|+.|..+|..+++............. ..........++..++++ .++.|..+|+++|+.+-.......
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA----GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC----STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccceeeeEecccCCcceeeeecccccccc----ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 667777888999999999876443112111110 011222233336666664 589999999999999777654221
Q ss_pred C--CC------eeEEEECCCCCEEEEEEcCCe-EEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEE
Q 001295 987 S--AP------ITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1057 (1106)
Q Consensus 987 ~--~~------v~~l~~s~d~~~l~t~s~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t 1057 (1106)
. .. +..-.+..++ .++.++.++. +.+ |+.+++.+-... ..+ .. . .... ++..|+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-----~~~-----~~--~-~~~~-~~~~l~~ 217 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-----ISG-----IY--S-LPSV-DGGTLYV 217 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-----SS------EC--E-CEEC-CCTEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-----CCC-----cc--C-Ccee-eCCEEEE
Confidence 1 11 1222233345 6666777775 555 999999663222 111 11 1 1233 4678887
Q ss_pred EeCCCcEEEEeecCCCCccC
Q 001295 1058 GLSDGGVHVFEPLESEGKWG 1077 (1106)
Q Consensus 1058 ~~~Dg~v~vW~~~~~~~~~~ 1077 (1106)
++.|+.|..||+.+++..|.
T Consensus 218 ~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 218 TSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EETTTEEEEEETTTTEEEEE
T ss_pred EeCCCEEEEEECCCCCEEeE
Confidence 77999999999999997774
No 296
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.72 E-value=8.1e-06 Score=83.74 Aligned_cols=247 Identities=15% Similarity=0.187 Sum_probs=146.7
Q ss_pred cEEEEEecCCCeEEEEEeccCc-EEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEe
Q 001295 353 PMSMDFHPVQQTLLLVGTNVGD-IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 431 (1106)
Q Consensus 353 v~~~~~sp~g~~llatg~~dg~-i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 431 (1106)
.-.++.+|+....++.+-.-|+ ..+||..+++...... .-...-|.|| -+||+||++|.+.=
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-----------a~~gRHFyGH------g~fs~dG~~LytTE 69 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-----------APPGRHFYGH------GVFSPDGRLLYTTE 69 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-----------CCCCCEEecC------EEEcCCCCEEEEec
Confidence 3467888966657888777664 7899999998775311 1111235667 57999999999863
Q ss_pred -----CCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecC----------------CCcEEEEeCCC
Q 001295 432 -----SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD----------------DKTIKVWDATN 490 (1106)
Q Consensus 432 -----~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~----------------d~~i~iwd~~~ 490 (1106)
..|.|-|||...+ ++.+.++..|.-.-..+.+.|||+.+.++-|+- +-++.+-|..+
T Consensus 70 nd~~~g~G~IgVyd~~~~--~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s 147 (305)
T PF07433_consen 70 NDYETGRGVIGVYDAARG--YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS 147 (305)
T ss_pred cccCCCcEEEEEEECcCC--cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC
Confidence 3488999999932 344456777777778899999998655554542 33566667788
Q ss_pred CceeEE--E--eccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeec
Q 001295 491 GAKQYI--F--EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 566 (1106)
Q Consensus 491 ~~~~~~--~--~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 566 (1106)
|+.+.. + .-|...|..+++..+ |..++..-..|.- ....++.-+.........+...++.. ..-.
T Consensus 148 G~ll~q~~Lp~~~~~lSiRHLa~~~~--G~V~~a~Q~qg~~-----~~~~PLva~~~~g~~~~~~~~p~~~~----~~l~ 216 (305)
T PF07433_consen 148 GALLEQVELPPDLHQLSIRHLAVDGD--GTVAFAMQYQGDP-----GDAPPLVALHRRGGALRLLPAPEEQW----RRLN 216 (305)
T ss_pred CceeeeeecCccccccceeeEEecCC--CcEEEEEecCCCC-----CccCCeEEEEcCCCcceeccCChHHH----HhhC
Confidence 887765 4 337777888886443 3333333222210 00001111111111111111111000 0112
Q ss_pred cceeEEEEcCCCCEEEEE-ECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEE
Q 001295 567 RSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIK 635 (1106)
Q Consensus 567 ~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 635 (1106)
+-+.+++++.++.++++. -..+.+.+||..+++.+...... .+..++-.+++ ++++ +..|.+.
T Consensus 217 ~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~----D~cGva~~~~~-f~~s-sG~G~~~ 280 (305)
T PF07433_consen 217 GYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP----DACGVAPTDDG-FLVS-SGQGQLI 280 (305)
T ss_pred CceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC----ceeeeeecCCc-eEEe-CCCccEE
Confidence 245567777777667554 47889999999999998877633 45667777666 4444 4345543
No 297
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.71 E-value=3.4e-07 Score=89.95 Aligned_cols=226 Identities=15% Similarity=0.209 Sum_probs=140.2
Q ss_pred CCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCc--eeeeeeeeccccC------------CeeEEEEcCCCCceEEEE
Q 001295 411 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD--EVRQHLEIDAHVG------------GVNDIAFSHPNKQLCVIT 476 (1106)
Q Consensus 411 h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~--~~~~~~~l~~h~~------------~V~~~~~s~d~~~~~l~s 476 (1106)
....|+++.|...|.|||+|...|.|.++.-.... ..+-+..+++|.. .|..+.|..++..-.++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35579999999999999999999999999765432 1222334556653 488899988776557777
Q ss_pred ecCCCcEEEEeCCCCc-------------------ee-----------------------EEE-eccCCCeEEEeccccC
Q 001295 477 CGDDKTIKVWDATNGA-------------------KQ-----------------------YIF-EGHEAPVYSVCPHHKE 513 (1106)
Q Consensus 477 ~~~d~~i~iwd~~~~~-------------------~~-----------------------~~~-~~h~~~v~~~~~~~~~ 513 (1106)
.+.|++|++|.+.... ++ +.. ..|.-.+.++.+..+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 8889999999875320 00 001 2456667777764433
Q ss_pred CceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCC-EEEEEECCCeEEE
Q 001295 514 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN-RFLAAGDDFSIKF 592 (1106)
Q Consensus 514 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i 592 (1106)
..+++ ..|=.|.+|+++-...-..+ +..-|..- ..-...|++..|+|... .+.-.+..|.|++
T Consensus 185 --et~lS-aDdLrINLWnl~i~D~sFnI---------VDiKP~nm----eeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 185 --ETLLS-ADDLRINLWNLEIIDGSFNI---------VDIKPHNM----EELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred --heeee-ccceeeeeccccccCCceEE---------EeccCccH----HHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 44444 45788999988753332211 11111100 00001233444555433 3445677899999
Q ss_pred EECCCccee------E--EEccC------CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccc
Q 001295 593 WDMDSVQLL------T--SIDAD------GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 653 (1106)
Q Consensus 593 wd~~~~~~~------~--~~~~~------~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 653 (1106)
-|++...+- . .+.+. +-...|..+.|+++|+++++-+. -++++||++....+++++.-|.
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~ 322 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHC 322 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHH
Confidence 998743211 1 11111 11235778999999999988766 6899999988777776664443
No 298
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.69 E-value=1.6e-05 Score=89.89 Aligned_cols=211 Identities=10% Similarity=0.016 Sum_probs=121.6
Q ss_pred CCeEEEEEcCCCceeeeecCCCCCe-----eEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcc----c---Ce
Q 001295 830 GGKISLFNMMTFKTMATFMPPPPAA-----TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS----K---RI 897 (1106)
Q Consensus 830 dg~i~vwd~~~~~~~~~~~~~~~~v-----~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~----~---~V 897 (1106)
+|.|..+|.++|+.+..+....... .+-... ++ .++.++.+|.+..+|..+|+.+-...... . ..
T Consensus 169 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~ 245 (394)
T PRK11138 169 NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRL 245 (394)
T ss_pred CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcc
Confidence 6777777777777665554321110 111122 23 45667788999999999887665432110 0 01
Q ss_pred eEEEEec--CCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCc
Q 001295 898 TGLAFSH--ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL 975 (1106)
Q Consensus 898 ~~l~~s~--d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~ 975 (1106)
..+.-+| .+..++.++.+|.+..+|..+++..-.... + ....+.. .+++.++...++.+..+|..++
T Consensus 246 ~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~----~------~~~~~~~-~~~~vy~~~~~g~l~ald~~tG 314 (394)
T PRK11138 246 VDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY----G------SVNDFAV-DGGRIYLVDQNDRVYALDTRGG 314 (394)
T ss_pred cccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC----C------CccCcEE-ECCEEEEEcCCCeEEEEECCCC
Confidence 1111122 245677777899999999998764322111 1 1111222 2445555578899999999998
Q ss_pred eEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEE
Q 001295 976 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1055 (1106)
Q Consensus 976 ~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l 1055 (1106)
+.+-...... .....+..+ .+.+|+.++.||.|++.|..+|+.+.+... ..+ .....| .+. +..|
T Consensus 315 ~~~W~~~~~~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~----~~~--~~~s~P---~~~---~~~l 379 (394)
T PRK11138 315 VELWSQSDLL-HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV----DSS--GFLSEP---VVA---DDKL 379 (394)
T ss_pred cEEEcccccC-CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc----CCC--cceeCC---EEE---CCEE
Confidence 7644322111 111222222 256778889999999999999999887652 111 010111 122 3578
Q ss_pred EEEeCCCcEEEEee
Q 001295 1056 ALGLSDGGVHVFEP 1069 (1106)
Q Consensus 1056 ~t~~~Dg~v~vW~~ 1069 (1106)
+.++.||.|+.++.
T Consensus 380 ~v~t~~G~l~~~~~ 393 (394)
T PRK11138 380 LIQARDGTVYAITR 393 (394)
T ss_pred EEEeCCceEEEEeC
Confidence 88899999988764
No 299
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.69 E-value=8.5e-06 Score=83.57 Aligned_cols=185 Identities=12% Similarity=0.141 Sum_probs=127.5
Q ss_pred EEEEecCCCEEEEEe------CCeEEEEEcC-CCceeeeecCCCCCeeEEEEecCCCceEEEee----------------
Q 001295 815 CFALSKNDSYVMSAS------GGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDNNIIAIGM---------------- 871 (1106)
Q Consensus 815 ~l~~s~~~~~l~~~s------dg~i~vwd~~-~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~---------------- 871 (1106)
.-+||+||++|.+.- .|.|-|||.. +.+.+.++..+.-.-..+.+.| |++.|+++.
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecCh
Confidence 368999999999884 2779999999 7778888888777777888999 787776653
Q ss_pred --CCCcEEEEEeecceEEEE--e--cCcccCeeEEEEecCCCEEEEEcCCC-------cEEEEeCCCcccccceeecccC
Q 001295 872 --DDSSIQIYNVRVDEVKSK--L--KGHSKRITGLAFSHALNVLVSSGADS-------QLCVWSSDGWEKQKNRFLQIPT 938 (1106)
Q Consensus 872 --~dg~v~iwd~~~~~~~~~--l--~~h~~~V~~l~~s~d~~~l~s~s~Dg-------~i~vwd~~~~~~~~~~~~~~~~ 938 (1106)
.+-++...|..+|+++.+ + ..|..+|..|++.++|..++..=..| .|-+++-.. . ...+....
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~--~~~~~~p~ 209 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--A--LRLLPAPE 209 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--c--ceeccCCh
Confidence 122455667788888877 4 34888999999999987666543322 133333322 1 01111111
Q ss_pred C-CCCCCCCCceEEEcCCCcEEEEE--eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCe
Q 001295 939 G-RTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT 1010 (1106)
Q Consensus 939 ~-~~~~~~~i~~~~~s~dg~~l~~~--~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~ 1010 (1106)
. -......+-++++++++.+++++ ..+.+.+||..+++.+.... -..+..++-.+++ ++++.+ .|.
T Consensus 210 ~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~----l~D~cGva~~~~~-f~~ssG-~G~ 278 (305)
T PF07433_consen 210 EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP----LPDACGVAPTDDG-FLVSSG-QGQ 278 (305)
T ss_pred HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc----cCceeeeeecCCc-eEEeCC-Ccc
Confidence 0 01122578899999999988874 56789999999999988765 4467777777777 666544 444
No 300
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.67 E-value=3.3e-06 Score=94.07 Aligned_cols=114 Identities=18% Similarity=0.306 Sum_probs=86.4
Q ss_pred EEEEEccCCCEEEEEe----CCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC
Q 001295 416 NRVIWSPDGSLFGVAY----SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 491 (1106)
Q Consensus 416 ~~l~~spdg~~las~~----~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 491 (1106)
+-.+|+|...++|+++ ..|.|-||- ++|++-+.. +..- .+++++|+|..- +|+.|=.-|.+.+|...+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V-t~P~---hatSLCWHpe~~--vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV-TYPV---HATSLCWHPEEF--VLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc-ccce---ehhhhccChHHH--HHhhccccceeEEEecCCc
Confidence 4457999999998886 357888884 455533211 2222 357799999876 7888888999999998777
Q ss_pred ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCce
Q 001295 492 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 538 (1106)
Q Consensus 492 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 538 (1106)
+.......|..+|..+.|+++ |..++++..-|.+.+|..+-.+..
T Consensus 92 e~htv~~th~a~i~~l~wS~~--G~~l~t~d~~g~v~lwr~d~~g~~ 136 (1416)
T KOG3617|consen 92 ETHTVVETHPAPIQGLDWSHD--GTVLMTLDNPGSVHLWRYDVIGEI 136 (1416)
T ss_pred eeeeeccCCCCCceeEEecCC--CCeEEEcCCCceeEEEEeeecccc
Confidence 766666779999999999655 478999999999999988754433
No 301
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.66 E-value=2.2e-07 Score=95.40 Aligned_cols=167 Identities=20% Similarity=0.267 Sum_probs=114.7
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEEccCCce-eeeeeeeccccCCeeEEEEcCCCCce-EEEEecCCCcEEEEeCCCC
Q 001295 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHPNKQL-CVITCGDDKTIKVWDATNG 491 (1106)
Q Consensus 414 ~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~-~~~~~~l~~h~~~V~~~~~s~d~~~~-~l~s~~~d~~i~iwd~~~~ 491 (1106)
.+..+..++++++||++..+....++++..... .+...... -...-+++.|..+.... +....++...+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 345566778888888887777777777665432 11111111 12233444554444431 3334566778888887764
Q ss_pred ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEee-CCCCeeEEEEEecCCCeEEEeeecccee
Q 001295 492 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLG 570 (1106)
Q Consensus 492 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~i~ 570 (1106)
. ..-+-||-..++.++|++++ ++|+++..|..|++-.+...-.+..+. +|...|..++..++..
T Consensus 143 ~-~~~~lGhvSml~dVavS~D~--~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~------------ 207 (390)
T KOG3914|consen 143 R-CEPILGHVSMLLDVAVSPDD--QFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL------------ 207 (390)
T ss_pred C-cchhhhhhhhhheeeecCCC--CEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce------------
Confidence 4 34456899999999987655 899999999999998776655554443 4777788887776653
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEcc
Q 001295 571 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 606 (1106)
Q Consensus 571 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 606 (1106)
|++++.|++|++||+.+|+.+.++..
T Consensus 208 ----------LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 208 ----------LLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred ----------eeecCCCCcEEEEecccCCcccccch
Confidence 89999999999999999998877653
No 302
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.65 E-value=1.2e-07 Score=103.61 Aligned_cols=218 Identities=14% Similarity=0.228 Sum_probs=145.8
Q ss_pred ccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc-CCC
Q 001295 347 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGS 425 (1106)
Q Consensus 347 ~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~ 425 (1106)
.+|+..|+.+-|+|....++|+.+.|..|..||+.+.... |..| ..-...-..|+|+- ++.
T Consensus 111 hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p----~ys~--------------~~w~s~asqVkwnyk~p~ 172 (1081)
T KOG0309|consen 111 HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP----FYST--------------SSWRSAASQVKWNYKDPN 172 (1081)
T ss_pred ecCccceeccccCCCCCcceeeccccccceeeeccCCCcc----eeee--------------ecccccCceeeecccCcc
Confidence 3599999999999999989999999999999999875432 2211 22233566789987 555
Q ss_pred EEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCcee-EEEeccCCCe
Q 001295 426 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-YIFEGHEAPV 504 (1106)
Q Consensus 426 ~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~h~~~v 504 (1106)
.|| .+..+.|++||...|... +..+++|...|+.++|..--.. .+.+++.|++|+.||....... ........+|
T Consensus 173 vla-sshg~~i~vwd~r~gs~p--l~s~K~~vs~vn~~~fnr~~~s-~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~pi 248 (1081)
T KOG0309|consen 173 VLA-SSHGNDIFVWDLRKGSTP--LCSLKGHVSSVNSIDFNRFKYS-EIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPI 248 (1081)
T ss_pred hhh-hccCCceEEEeccCCCcc--eEEecccceeeehHHHhhhhhh-hhcccCCCCceeeecccccccccceeccccCcc
Confidence 555 445677999999987643 3468889999999999765333 5889999999999997743221 1122244566
Q ss_pred EEEeccccCCceEEEEEecCCeEEEEeCCC----------CCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEE
Q 001295 505 YSVCPHHKENIQFIFSTALDGKIKAWLYDN----------LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 574 (1106)
Q Consensus 505 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~ 574 (1106)
+--++.|-.+|.++.---.+..+.+++-++ ...+..+.+|...|....|-..+.. .-.+
T Consensus 249 w~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~-----------~~d~ 317 (1081)
T KOG0309|consen 249 WRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKEC-----------DGDY 317 (1081)
T ss_pred eeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccc-----------cCCC
Confidence 666666666665444333344555544332 2345567777776666555433320 0112
Q ss_pred cCCCCEEEEEECCCeEEEEECCC
Q 001295 575 DTTKNRFLAAGDDFSIKFWDMDS 597 (1106)
Q Consensus 575 ~~~~~~l~~~~~d~~i~iwd~~~ 597 (1106)
...+-+|++-+.|.++++|-+.+
T Consensus 318 d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 318 DSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CccceeEEEeecCCceEeeeccH
Confidence 22234689999999999998754
No 303
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.65 E-value=3.7e-06 Score=81.35 Aligned_cols=188 Identities=9% Similarity=-0.020 Sum_probs=127.1
Q ss_pred eCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecc-e-EEE-EecCcccCeeEEEEecC
Q 001295 829 SGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-E-VKS-KLKGHSKRITGLAFSHA 905 (1106)
Q Consensus 829 sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~-~-~~~-~l~~h~~~V~~l~~s~d 905 (1106)
.|.++++++++.+.......-..-.+.++++++ |++++++.++...|..|.+... + ... ....-++.=.+..|+..
T Consensus 136 ndht~k~~~~~~~s~~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~ 214 (344)
T KOG4532|consen 136 NDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEN 214 (344)
T ss_pred CCcceeEEEEecCcccceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccC
Confidence 378888888875544333221222388999999 9999999999999999998753 2 222 23334455578899999
Q ss_pred CCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCc--EEEE-EeCCeEEEEecCCceEeeecc
Q 001295 906 LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI--HFLV-VHETQLAIFETTKLECVKQWV 982 (1106)
Q Consensus 906 ~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~--~l~~-~~d~~v~i~d~~~~~~~~~~~ 982 (1106)
...+|++..||++.|||++.........- .......++++.+.|++.|- +|.. -.-+.+.+.|++++.....+.
T Consensus 215 ~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s---strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 215 DLQFAVVFQDGTCAIYDVRNMATPMAEIS---STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV 291 (344)
T ss_pred cceEEEEecCCcEEEEEecccccchhhhc---ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence 99999999999999999987443222111 22222447999999998653 2333 356789999999987555443
Q ss_pred cC-----CCC-CCeeEEEECCCCCEEEEEEcCCeEEEEEcCCcee
Q 001295 983 PR-----ESS-APITHATFSCDSQLVYACFLDATVCVFSAANLKL 1021 (1106)
Q Consensus 983 ~~-----~h~-~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~ 1021 (1106)
.. .|. ..|..-.|+.++..+.+.+++. +.=|++.+...
T Consensus 292 i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni~srsR 335 (344)
T KOG4532|consen 292 IPDDVERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNILSRSR 335 (344)
T ss_pred cCccccccccccccccccccCCCcccccccchh-hheeeccccce
Confidence 21 232 3488888888888777776553 45567665443
No 304
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=3e-07 Score=93.24 Aligned_cols=160 Identities=12% Similarity=0.133 Sum_probs=116.6
Q ss_pred hHHHHHHHHHHHhHhcHHHHHHHHHHhhCCCc--------cHHHHHHHHhcCCHHHHHHHhcccccccCccccchhhhHH
Q 001295 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFF--------NMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEI 76 (1106)
Q Consensus 5 ~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~--------~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i 76 (1106)
+.-+.|+|..||..+||.++|..|-++|.+.- ++..++++|++|+...|+.-.+.....-.. ....+-|.+
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK-~~S~lEf~l 193 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKK-EESSLEFQL 193 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh-ccchhhhHH
Confidence 45578999999999999999999999999862 377889999999999888776544211111 122388999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccchhhccCCC-chHHHHHHHH--HHHhhhcc
Q 001295 77 RKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-TKSARSIMLV--ELKKLIEA 153 (1106)
Q Consensus 77 ~~q~~lEll~~~~~~~A~~~l~~~l~~l~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~-~~~~r~~l~~--~l~~~~~~ 153 (1106)
+.|+|+||+..+++.+|+.+.++.|.|....+.++++....++.++....... |.+ -...|=.-++ .++.+..-
T Consensus 194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~~sk---y~~l~~~~rw~~l~~lF~s~a~~l 270 (389)
T KOG0396|consen 194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTSSSK---YLNLLTADRWSVLADLFLSEALKL 270 (389)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccCccc---ccCcccHHHHHHHHHHhhHHHHHH
Confidence 99999999999999999999999999998889999999999998865443332 223 2334445444 34544443
Q ss_pred CCCCcCcCCchhhHhh
Q 001295 154 NPLFRDKLQFPNLKNS 169 (1106)
Q Consensus 154 ~~~~~~~~rl~~l~~q 169 (1106)
.-+.. +.+|..+++-
T Consensus 271 ~~i~~-~~~L~~~l~~ 285 (389)
T KOG0396|consen 271 FGIPI-NPALTIYLQA 285 (389)
T ss_pred hCCCC-CcHHHHHHHh
Confidence 22222 2256666553
No 305
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.59 E-value=1.1e-06 Score=86.44 Aligned_cols=184 Identities=15% Similarity=0.250 Sum_probs=115.3
Q ss_pred ccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCc-----eeEEEeccCC------------CeEEEeccccCCceEE
Q 001295 456 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-----KQYIFEGHEA------------PVYSVCPHHKENIQFI 518 (1106)
Q Consensus 456 h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~h~~------------~v~~~~~~~~~~~~~l 518 (1106)
....|+++.|...|. ++++|...|.|.++.-.... ....|++|.. .|..+.|........+
T Consensus 25 ead~ItaVefd~tg~--YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 25 EADKITAVEFDETGL--YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred ccceeeEEEeccccc--eEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence 345799999998888 89999999999999754322 2234566643 4677777666666778
Q ss_pred EEEecCCeEEEEeCCCCCceeEee--------C-CCCeeEE-------------EEEecCCCeEEEeeeccceeEEEEcC
Q 001295 519 FSTALDGKIKAWLYDNLGSRVDYE--------A-PGRWCTT-------------MAYSADGTRTYQGFRKRSLGVVQFDT 576 (1106)
Q Consensus 519 ~s~~~dg~i~iwd~~~~~~~~~~~--------~-~~~~v~~-------------~~~s~~~~~~~~~~~~~~i~~~~~~~ 576 (1106)
+..+.|.+|++|.+.......... . .++++++ ........+++...+.-.+.++.++.
T Consensus 103 LlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns 182 (460)
T COG5170 103 LLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS 182 (460)
T ss_pred EEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence 888899999999886542211000 0 0011110 00111112444444555788899999
Q ss_pred CCCEEEEEECCCeEEEEECCCcc---eeEEEccCC---CCCCcCeEEEccC-CCEEEEEeCCCcEEEEEccCC
Q 001295 577 TKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADG---GLPASPRIRFNKD-GCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 577 ~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~---~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
+...++++. |=.|.+|++.-.. .+..++.+. -+.-|++..|+|. ...+.-.+..|.|++-|++..
T Consensus 183 D~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~ 254 (460)
T COG5170 183 DKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQS 254 (460)
T ss_pred chheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhh
Confidence 988777654 6689999976422 122222221 1234678889994 455666677899999988744
No 306
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.58 E-value=0.00019 Score=69.70 Aligned_cols=146 Identities=10% Similarity=0.042 Sum_probs=96.1
Q ss_pred EEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEee
Q 001295 463 IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE 542 (1106)
Q Consensus 463 ~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 542 (1106)
+...+|.+. +++.|+..+.+.--|..+|+.+..-. -...+.+-+.. -+ ++++.|+..|.+++.+..++++...+.
T Consensus 16 LVV~~dskT-~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vg--dfVV~GCy~g~lYfl~~~tGs~~w~f~ 90 (354)
T KOG4649|consen 16 LVVCNDSKT-LVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VG--DFVVLGCYSGGLYFLCVKTGSQIWNFV 90 (354)
T ss_pred EEEecCCce-EEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-EC--CEEEEEEccCcEEEEEecchhheeeee
Confidence 344456655 78889999999999999998775432 22344333322 12 579999999999999999887776554
Q ss_pred CCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEcc-C
Q 001295 543 APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-D 621 (1106)
Q Consensus 543 ~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~ 621 (1106)
..+.- -......+++..+.+|+.|+..+..|..+..++...+..+. ...+-+..| +
T Consensus 91 ~~~~v---------------------k~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~--~f~sP~i~~g~ 147 (354)
T KOG4649|consen 91 ILETV---------------------KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG--TFVSPVIAPGD 147 (354)
T ss_pred ehhhh---------------------ccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc--eeccceecCCC
Confidence 33221 11123456667899999999999999999999988776554 233445556 4
Q ss_pred CCEEEEEeCCCcEEEE
Q 001295 622 GCLLAVSTNDNGIKIL 637 (1106)
Q Consensus 622 ~~~l~~~~~dg~i~iw 637 (1106)
+.+ ..+...|.+.--
T Consensus 148 ~sl-y~a~t~G~vlav 162 (354)
T KOG4649|consen 148 GSL-YAAITAGAVLAV 162 (354)
T ss_pred ceE-EEEeccceEEEE
Confidence 443 334444554433
No 307
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.58 E-value=3.8e-05 Score=80.68 Aligned_cols=218 Identities=14% Similarity=0.077 Sum_probs=136.9
Q ss_pred eEEEEec-CCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEec
Q 001295 814 PCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 891 (1106)
Q Consensus 814 ~~l~~s~-~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~ 891 (1106)
.+++|.+ ++.++++-. .+.|..|+..++.... +.... ...+++...++.++++ .. +.+.++|..+++......
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~-~~-~~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVA-DS-GGIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEE-ET-TCEEEEETTTTEEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEE-Ec-CceEEEecCCCcEEEEee
Confidence 3678888 555555544 7899999998876543 22122 7788888326665554 43 456666988876443332
Q ss_pred C-----cccCeeEEEEecCCCEEEEEcCC--------CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcE
Q 001295 892 G-----HSKRITGLAFSHALNVLVSSGAD--------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 958 (1106)
Q Consensus 892 ~-----h~~~V~~l~~s~d~~~l~s~s~D--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~ 958 (1106)
. .....+.+++.++|++.++.... |.|..++.. ++. ....... .....++|+||++.
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~--~~~~~~~-------~~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV--TVVADGL-------GFPNGIAFSPDGKT 147 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE--EEEEEEE-------SSEEEEEEETTSSE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE--EEEecCc-------ccccceEECCcchh
Confidence 2 34668899999999988876544 446666665 221 1111111 13478999999998
Q ss_pred EEEE--eCCeEEEEecCCceE----eeec-ccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCccc
Q 001295 959 FLVV--HETQLAIFETTKLEC----VKQW-VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYL 1031 (1106)
Q Consensus 959 l~~~--~d~~v~i~d~~~~~~----~~~~-~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~ 1031 (1106)
|.++ ..+.|..|++..... ...+ .........-.+++..+|++.++....+.|.++|.+ |+++..+. +
T Consensus 148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~----~ 222 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIE----L 222 (246)
T ss_dssp EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-----
T ss_pred eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEc----C
Confidence 8763 667899888853211 1222 111112347889999999988888889999999977 99888887 4
Q ss_pred CCCCCCCCccceEEEEeCCCCCEEEE
Q 001295 1032 PAGVSSSNVHPLVIAAHPQEPNEFAL 1057 (1106)
Q Consensus 1032 ~~~~~~~~v~~~~~~~~~~d~~~l~t 1057 (1106)
| . -.+..++|...|.+.|+.
T Consensus 223 p-~-----~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 223 P-V-----PRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp S-S-----SSEEEEEEESTTSSEEEE
T ss_pred C-C-----CCEEEEEEECCCCCEEEE
Confidence 4 1 135589996435555443
No 308
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.56 E-value=7.2e-07 Score=85.80 Aligned_cols=250 Identities=13% Similarity=0.159 Sum_probs=140.8
Q ss_pred cEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeC
Q 001295 353 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS 432 (1106)
Q Consensus 353 v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 432 (1106)
|+.+.|+-+- .|+++..++.+.....-++.+.. .|+-.....+ ...+..|+++-.+-+.+--++.+++++.
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~~--~~~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCIS-----LWERDDGIDP--FKVLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEec-----hhhcccCcCc--eeeeeccCCCCCcccccccCCceEecCC
Confidence 6666666654 58888888877777665443332 1211111111 1123344444444444456778999999
Q ss_pred CCeEEEEEccCCceeeeeeeec-cccCCeeEEEEcCCCCceEEEEec-----CCCcEEEEeCCCCceeEEEeccCCCeEE
Q 001295 433 RHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCG-----DDKTIKVWDATNGAKQYIFEGHEAPVYS 506 (1106)
Q Consensus 433 d~~v~iwd~~~~~~~~~~~~l~-~h~~~V~~~~~s~d~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 506 (1106)
||.+.+.+.+.- .+...... .|.+ -.+.+....+. .+.+++ .-+..++|+++-.+.+..-......|.+
T Consensus 110 dg~~~v~s~~~~--~~~~~~i~~~~~~-~as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDKD--LALMSRIPSIHSG-SASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred CceEEEEechHH--Hhhhhhccccccc-ccccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 999999998752 21111111 1221 12233333444 333332 1234556665533322211112234899
Q ss_pred EeccccCCceEEEEEecCCeEEEEeCCCCCcee-EeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEE
Q 001295 507 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 585 (1106)
Q Consensus 507 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 585 (1106)
+|-+|... +++++|+.||.+-+||++....+. .+..|...+..+.|+|... ..|++++
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p--------------------~~Lft~s 243 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNP--------------------EHLFTCS 243 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCc--------------------hheeEec
Confidence 99888765 688999999999999999864433 4556666677777666432 4699999
Q ss_pred CCCeEEEEECCCcceeEEEc-cCCC-----CCCcCe---------------EEEccCCCEEEEEeCCCcEEEEE
Q 001295 586 DDFSIKFWDMDSVQLLTSID-ADGG-----LPASPR---------------IRFNKDGCLLAVSTNDNGIKILA 638 (1106)
Q Consensus 586 ~d~~i~iwd~~~~~~~~~~~-~~~~-----~~~v~~---------------v~~s~~~~~l~~~~~dg~i~iwd 638 (1106)
+||.+..||..+ +.+..-. .... ...+.+ -.|.--|..|++|++-+.|++++
T Consensus 244 edGslw~wdas~-~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 244 EDGSLWHWDAST-TFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred CCCcEEEEcCCC-ceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 999999999864 2222100 0000 011111 12333577888888888888764
No 309
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.56 E-value=2.9e-07 Score=92.05 Aligned_cols=167 Identities=14% Similarity=0.084 Sum_probs=123.8
Q ss_pred EEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCC
Q 001295 354 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR 433 (1106)
Q Consensus 354 ~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 433 (1106)
+.++||-+-.-.-++.+.+-.|-+-|+++|-... +. ..+.|.++.|...+.++..|..+
T Consensus 215 ~~CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f~-sksDVfAlQf~~s~nLv~~GcRn 273 (425)
T KOG2695|consen 215 WSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------FQ-SKSDVFALQFAGSDNLVFNGCRN 273 (425)
T ss_pred hhhhhhhccceeeecccccceeEEEEeecccccc--------------------cc-cchhHHHHHhcccCCeeEecccC
Confidence 3346664322112333446778899999886533 22 46689999999999999999999
Q ss_pred CeEEEEEccCCce--eeeeeeeccccCCeeEEEEcC-CCCceEEEEecCCCcEEEEeCCCCce---eEEEeccCCCeEEE
Q 001295 434 HIVQIYSYHGGDE--VRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAK---QYIFEGHEAPVYSV 507 (1106)
Q Consensus 434 ~~v~iwd~~~~~~--~~~~~~l~~h~~~V~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~~~v~~~ 507 (1106)
|.|...|++.+.. ..+...+ -|...|+++..-. +++ +|++.+.+|+|++||.+--++ ++++.||...-.-+
T Consensus 274 geI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l 350 (425)
T KOG2695|consen 274 GEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYL 350 (425)
T ss_pred CcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccc
Confidence 9999999986411 1111123 4889999998877 555 789999999999999987666 89999998776666
Q ss_pred eccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCC
Q 001295 508 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP 544 (1106)
Q Consensus 508 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 544 (1106)
-++.++....+++++.|...|+|.++.+..+.+++..
T Consensus 351 ~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 351 PAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 6666666678999999999999999987777665544
No 310
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=2.3e-06 Score=88.87 Aligned_cols=299 Identities=15% Similarity=0.150 Sum_probs=192.3
Q ss_pred cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295 742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 821 (1106)
Q Consensus 742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 821 (1106)
|...|+.+..+ ..+++++++-||.++.|.-..- .|........ .|-..|.+++.+.+
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~i--------------------sGvEfVKhFr--aHL~~I~sl~~S~d 64 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRI--------------------SGVEFVKHFR--AHLGVILSLAVSYD 64 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCc--------------------cceeehhhhH--HHHHHHHhhhcccc
Confidence 66666665544 4457899999999998853210 1111111111 26777889999999
Q ss_pred CCEEEEEe--CCeEEEEEcCCCceeeeecC--CCCCeeEEEEecCCC--ceEEEeeCCCcEEEEEeecce--EEEEecCc
Q 001295 822 DSYVMSAS--GGKISLFNMMTFKTMATFMP--PPPAATFLAFHPQDN--NIIAIGMDDSSIQIYNVRVDE--VKSKLKGH 893 (1106)
Q Consensus 822 ~~~l~~~s--dg~i~vwd~~~~~~~~~~~~--~~~~v~~l~~s~~d~--~~la~g~~dg~v~iwd~~~~~--~~~~l~~h 893 (1106)
+.++.+.+ |..++++|+.+...+.-++. ..+.+ ++..++.|. .+-++...+|.+.|+|-.... ....-.-|
T Consensus 65 g~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH 143 (558)
T KOG0882|consen 65 GWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLH 143 (558)
T ss_pred ceeEeeccCcccceeEEEeeccchhhhcccccCCCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccc
Confidence 99999976 68899999987666533321 22222 222333111 233344577899999976533 23333459
Q ss_pred ccCeeEEEEecCCCEEEEEcCCCcEEEEeCCC-cccccce------eecccCCCCCCCCCCceEEEcCCCcEEEE-EeCC
Q 001295 894 SKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNR------FLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHET 965 (1106)
Q Consensus 894 ~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~-~~~~~~~------~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~ 965 (1106)
..+|..+-+.+-+...+|....|.|.-|..+. .+..... .....-+.........++.|+|+|..+++ +.|.
T Consensus 144 ~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Dr 223 (558)
T KOG0882|consen 144 FSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDR 223 (558)
T ss_pred cCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCccc
Confidence 99999999999999999999999999999873 1111110 01111122233357789999999999999 7999
Q ss_pred eEEEEecCCceEeeecccC------------------------------CC-CCCeeEEEECCCCCEEEEEEcCCeEEEE
Q 001295 966 QLAIFETTKLECVKQWVPR------------------------------ES-SAPITHATFSCDSQLVYACFLDATVCVF 1014 (1106)
Q Consensus 966 ~v~i~d~~~~~~~~~~~~~------------------------------~h-~~~v~~l~~s~d~~~l~t~s~Dg~i~vw 1014 (1106)
.|++++..+++.++.+... .| ...-+.+.|...|.+|+.|+-=| |+|.
T Consensus 224 kVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvi 302 (558)
T KOG0882|consen 224 KVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVI 302 (558)
T ss_pred EEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEE
Confidence 9999999999876554311 12 23346778899999999887555 8999
Q ss_pred EcCCceeEEeeCCCc---------c-------cCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEE
Q 001295 1015 SAANLKLRCRINPSA---------Y-------LPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1067 (1106)
Q Consensus 1015 d~~~~~~~~~~~~~~---------~-------~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW 1067 (1106)
++.++...+.+.... + .+.-...+...| .+.+.+ |+.+++++-..+.++++
T Consensus 303 n~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np-~~~~~~-dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 303 NLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNP-LLEFQK-DPTIVCTAFKKNRFYLF 369 (558)
T ss_pred EeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCc-ccccCC-CCeEEEeeeecceEEEE
Confidence 999988766543110 0 000000111122 234555 67788888888888888
No 311
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=7.8e-07 Score=92.19 Aligned_cols=213 Identities=13% Similarity=0.082 Sum_probs=154.8
Q ss_pred CCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec---ceEEEEecCcccCeeEEEEecCCCEEEEEcC-CCcEEEEeCCC
Q 001295 850 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---DEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDG 925 (1106)
Q Consensus 850 ~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~---~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~ 925 (1106)
|...|+.+..+. .+++.+++.||.++.|.-.. -+.+..+..|-..|.+++.+.||.++.|.+. |..++++|+.+
T Consensus 8 hrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 677787777664 67999999999999997543 2455667889999999999999999999887 99999999998
Q ss_pred cccccceeecccCCCCCCCCCCceEEEcCCC--cEEEE--EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCE
Q 001295 926 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ--IHFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL 1001 (1106)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg--~~l~~--~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~ 1001 (1106)
........+..+.+ -..+..++.. ..+++ ..++.+.++|-...-|......+-|..+|.++.+.+-+..
T Consensus 86 ~DminmiKL~~lPg-------~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 86 FDMINMIKLVDLPG-------FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS 158 (558)
T ss_pred cchhhhcccccCCC-------ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc
Confidence 66543322222222 1223333332 13444 3778999999887776665666679999999999999999
Q ss_pred EEEEEcCCeEEEEEcCC------ceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295 1002 VYACFLDATVCVFSAAN------LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus 1002 l~t~s~Dg~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
+++....|.|.-|..+. .++...++....+-.- -...-.+.++.|+| ++..+.+-+.|..|++++..+|+
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f-~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGF-PKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhcc-cccccCccceEEcc-ccCcccccCcccEEEEEEeccch
Confidence 99998899999999873 2222222211111111 01113456899999 79999999999999999999998
No 312
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.51 E-value=1.3e-06 Score=84.17 Aligned_cols=198 Identities=15% Similarity=0.126 Sum_probs=120.4
Q ss_pred eeEEEEecCCCceEEEeeCCCcEEEEEeecceEE------------EEecCcccCeeEEEEecCCCEEEEEcCCCcEEEE
Q 001295 854 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK------------SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 921 (1106)
Q Consensus 854 v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~------------~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vw 921 (1106)
++.+.++. ...|+++..++.+.......+.+. ..+..|+.+-.+-+.+--+..++++..||.+.+.
T Consensus 39 ~~~~~~v~--~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 39 LSKVSLSA--EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEeechh--hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence 66666663 456777777777666655444333 2233343333333333446789999999999999
Q ss_pred eCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEe------CCeEEEEecCCceEeeecccCCCCCCeeEEEE
Q 001295 922 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH------ETQLAIFETTKLECVKQWVPRESSAPITHATF 995 (1106)
Q Consensus 922 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~ 995 (1106)
+.+.-.....+ ....+. ...+.++...+..+.++. -+..++|+++-.+....-. .....|++++-
T Consensus 117 s~~~~~~~~~~---i~~~~~----~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~--~~~~~v~~l~~ 187 (319)
T KOG4714|consen 117 STDKDLALMSR---IPSIHS----GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK--KALDAVTALCS 187 (319)
T ss_pred echHHHhhhhh---cccccc----cccccceeecccEEecCCcceEeeccceeeecccccccccccc--cccccchhhhC
Confidence 98762211111 111111 122334444555555532 2445566654333221111 11345999999
Q ss_pred CCCCCE-EEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecC
Q 001295 996 SCDSQL-VYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus 996 s~d~~~-l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
.|..+. +++|++||.+-+||.........+ +.. + ...++ .+.|+|.++..|++++.||.+..||-++
T Consensus 188 hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~----l~a-h--k~~i~--eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 188 HPAQQHLVCCGTDDGIVGLWDARNVAMPVSL----LKA-H--KAEIW--EVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred CcccccEEEEecCCCeEEEEEcccccchHHH----HHH-h--hhhhh--heeccCCCchheeEecCCCcEEEEcCCC
Confidence 996654 678889999999999887433222 222 2 34477 8999999999999999999999999875
No 313
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.50 E-value=3.6e-07 Score=63.74 Aligned_cols=39 Identities=31% Similarity=0.555 Sum_probs=37.2
Q ss_pred ceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEe
Q 001295 884 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922 (1106)
Q Consensus 884 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd 922 (1106)
|+++.++.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 468899999999999999999999999999999999997
No 314
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.49 E-value=0.00027 Score=74.24 Aligned_cols=224 Identities=20% Similarity=0.225 Sum_probs=140.1
Q ss_pred EEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEc-cCCCEEEEEeC
Q 001295 354 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS-PDGSLFGVAYS 432 (1106)
Q Consensus 354 ~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~las~~~ 432 (1106)
.+++|.+....|+++....+.|..|+..+++.... ... ....+++. ++++++ .+..
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~--------------------~~~--~~~G~~~~~~~g~l~-v~~~ 59 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI--------------------DLP--GPNGMAFDRPDGRLY-VADS 59 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--------------------ESS--SEEEEEEECTTSEEE-EEET
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE--------------------ecC--CCceEEEEccCCEEE-EEEc
Confidence 36789984444788877789999999988765431 111 16667777 665544 4555
Q ss_pred CCeEEEEEccCCceeeeeeeec--c-ccCCeeEEEEcCCCCceEEEEecCC--------CcEEEEeCCCCceeEEEeccC
Q 001295 433 RHIVQIYSYHGGDEVRQHLEID--A-HVGGVNDIAFSHPNKQLCVITCGDD--------KTIKVWDATNGAKQYIFEGHE 501 (1106)
Q Consensus 433 d~~v~iwd~~~~~~~~~~~~l~--~-h~~~V~~~~~s~d~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~h~ 501 (1106)
++ +.++|..+++.. .+.... . .....+.+++.++|. +.++.... +.|..++.. ++...... .-
T Consensus 60 ~~-~~~~d~~~g~~~-~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~ 133 (246)
T PF08450_consen 60 GG-IAVVDPDTGKVT-VLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GL 133 (246)
T ss_dssp TC-EEEEETTTTEEE-EEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EE
T ss_pred Cc-eEEEecCCCcEE-EEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEec-Cc
Confidence 44 566699888643 333332 2 345789999999999 56665433 557777766 55433333 45
Q ss_pred CCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCc-ee---Ee-eCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcC
Q 001295 502 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-RV---DY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 576 (1106)
Q Consensus 502 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~---~~-~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~ 576 (1106)
...+.++|+++.. .++++-+..+.|..+++..... .. .+ ...... +..-.++++.
T Consensus 134 ~~pNGi~~s~dg~-~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-------------------g~pDG~~vD~ 193 (246)
T PF08450_consen 134 GFPNGIAFSPDGK-TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP-------------------GYPDGLAVDS 193 (246)
T ss_dssp SSEEEEEEETTSS-EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS-------------------CEEEEEEEBT
T ss_pred ccccceEECCcch-heeecccccceeEEEeccccccceeeeeeEEEcCCCC-------------------cCCCcceEcC
Confidence 6678899876542 3445777888899988865433 11 11 111110 1233456666
Q ss_pred CCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEc-cCCCEEEEEe
Q 001295 577 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVST 629 (1106)
Q Consensus 577 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~ 629 (1106)
+|+..++....+.|.+++.. |+.+..+.... ..+++++|. ++.+.|++.+
T Consensus 194 ~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~--~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 194 DGNLWVADWGGGRIVVFDPD-GKLLREIELPV--PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp TS-EEEEEETTTEEEEEETT-SCEEEEEE-SS--SSEEEEEEESTTSSEEEEEE
T ss_pred CCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC--CCEEEEEEECCCCCEEEEEe
Confidence 66677777789999999987 88888887662 368899994 6766666544
No 315
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.48 E-value=3e-05 Score=87.15 Aligned_cols=186 Identities=12% Similarity=0.050 Sum_probs=117.9
Q ss_pred EEecCCCEEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCC----cEEEEEeecceEEEEe
Q 001295 817 ALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS----SIQIYNVRVDEVKSKL 890 (1106)
Q Consensus 817 ~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg----~v~iwd~~~~~~~~~l 890 (1106)
=+++||+.+...+ .+.+.+.|.++.+...++.-.. ....+++++ +++++++.+.+. ++..-+..+...+..+
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvf 276 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF 276 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence 3456777665555 5778899999877776655332 457789999 888887775322 2222222111111111
Q ss_pred cCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCccccc-ceeecccCCCCCCCCCCceEEEcCCCcEEEEE--eCCeE
Q 001295 891 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQL 967 (1106)
Q Consensus 891 ~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~d~~v 967 (1106)
.- ..+ -++.++|++... .++.|.+.|..+..... .....+..+ .....+.+||||++++++ .+..|
T Consensus 277 ni--~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVG-----KsPHGV~vSPDGkylyVanklS~tV 345 (635)
T PRK02888 277 NI--ARI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVP-----KNPHGVNTSPDGKYFIANGKLSPTV 345 (635)
T ss_pred ch--HHH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECC-----CCccceEECCCCCEEEEeCCCCCcE
Confidence 00 000 133467877665 36779999988710000 112223333 256899999999999994 67899
Q ss_pred EEEecCCceE------------eeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001295 968 AIFETTKLEC------------VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus 968 ~i~d~~~~~~------------~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
.|+|+++.+. +..... .......+|+++|....|-..|..|..||+.+
T Consensus 346 SVIDv~k~k~~~~~~~~~~~~vvaevev---GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 346 TVIDVRKLDDLFDGKIKPRDAVVAEPEL---GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEEChhhhhhhhccCCccceEEEeecc---CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 9999988653 333332 34456789999999888889999999999986
No 316
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.48 E-value=0.00095 Score=79.03 Aligned_cols=275 Identities=13% Similarity=0.105 Sum_probs=150.6
Q ss_pred ceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhh
Q 001295 568 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 647 (1106)
Q Consensus 568 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 647 (1106)
.|..+.|..+++.++.+..+|.|.+-|..+......-.. ...|.+++|+||++.++..+..+++.+-.-. - .++.
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~v---d~GI~aaswS~Dee~l~liT~~~tll~mT~~-f-~~i~ 144 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNV---DNGISAASWSPDEELLALITGRQTLLFMTKD-F-EPIA 144 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEcccccceeeeeec---cCceEEEeecCCCcEEEEEeCCcEEEEEecc-c-cchh
Confidence 566677777777899999999999998877654332222 2358999999999999999998888765321 1 1111
Q ss_pred hhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCC
Q 001295 648 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS 727 (1106)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~ 727 (1106)
.-.-+...-. ....+.++....-.-+....+.
T Consensus 145 E~~L~~d~~~------------------------------------------------~sk~v~VGwGrkeTqfrgs~gr 176 (1265)
T KOG1920|consen 145 EKPLDADDER------------------------------------------------KSKFVNVGWGRKETQFRGSEGR 176 (1265)
T ss_pred cccccccccc------------------------------------------------ccccceecccccceeeecchhh
Confidence 0000000000 0000111111100011100000
Q ss_pred CCccceecc---cCccccccceEEEEEcCCCceEEEee-----cCceEEEeeccccccCCCCccccccCccccCCCCCCc
Q 001295 728 EPNQCRSLR---LPENLRATKISRLIFTNSGNAILALA-----SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIM 799 (1106)
Q Consensus 728 ~~~~~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 799 (1106)
......... .+.......=+.+.|--||.++++.. ....+++||-.. .+
T Consensus 177 ~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg-----------------------~L 233 (1265)
T KOG1920|consen 177 QAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREG-----------------------AL 233 (1265)
T ss_pred hcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEecccc-----------------------hh
Confidence 000000000 00000223345689999999888743 226788887541 11
Q ss_pred cccccCCCCCCCCeeEEEEecCCCEEEEEe----CCeEEEEEcCC---CceeeeecCCCCCeeEEEEecCCCceEEE---
Q 001295 800 MTNDVTDSNPEEAVPCFALSKNDSYVMSAS----GGKISLFNMMT---FKTMATFMPPPPAATFLAFHPQDNNIIAI--- 869 (1106)
Q Consensus 800 ~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s----dg~i~vwd~~~---~~~~~~~~~~~~~v~~l~~s~~d~~~la~--- 869 (1106)
-... ......-.+++|-|.|..+++-. |+.|.+|.-+. +.....+.....++..++|+. ++.+||+
T Consensus 234 ns~s---e~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns-~sdiLAv~~~ 309 (1265)
T KOG1920|consen 234 NSTS---EPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS-NSDILAVVTS 309 (1265)
T ss_pred hccc---CcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC-CCCceeeeec
Confidence 0000 01223345789999999999774 56799998653 222222333344589999999 8999998
Q ss_pred eeCCCcEEEEEeecce--EEEEecCcccCeeEEEEecCC-CEEEEEcCCCcEEEEeCC
Q 001295 870 GMDDSSIQIYNVRVDE--VKSKLKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSSD 924 (1106)
Q Consensus 870 g~~dg~v~iwd~~~~~--~~~~l~~h~~~V~~l~~s~d~-~~l~s~s~Dg~i~vwd~~ 924 (1106)
......|++|-+.+.. +...+.-..... +.|+|-. ..|..-..+|...++++.
T Consensus 310 ~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 310 NLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred ccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEEE
Confidence 5555569999987642 334444333333 7888743 234433466666666653
No 317
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.46 E-value=0.00016 Score=75.19 Aligned_cols=205 Identities=17% Similarity=0.161 Sum_probs=127.6
Q ss_pred EEEEecCCCEEEEEe---CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEee-cceEEEE-
Q 001295 815 CFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR-VDEVKSK- 889 (1106)
Q Consensus 815 ~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~-~~~~~~~- 889 (1106)
.++++.||+++.+.. .-.|.|.|+...+.+.++.... +..+-=+ .++-+.+-+.||++.-..+. .|+...+
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~--~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPS--GNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEE--ETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEec--CCCceEEEecCCceEEEEECCCCCEeEee
Confidence 356778888877775 4679999999988888776322 2223222 33456677889999998887 4554422
Q ss_pred ---ecCcccCe-eEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCC----CCCCCCCCceEEEcCCCcEEEE
Q 001295 890 ---LKGHSKRI-TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG----RTPTAQSDTRVQFHQDQIHFLV 961 (1106)
Q Consensus 890 ---l~~h~~~V-~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~s~dg~~l~~ 961 (1106)
|..-.+++ ..-+++.++..++-.+.+|.|+--|+................ ..-.++.-..+++++....|.+
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 22222222 233455566666668888888888877654333222222110 0001133456888876655555
Q ss_pred ----EeCC-------eEEEEecCCceEeeecccCCCCCCeeEEEECCCCC-EEEEEE-cCCeEEEEEcCCceeEEeeC
Q 001295 962 ----VHET-------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus 962 ----~~d~-------~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~-~l~t~s-~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
+.++ .|-+||+.+++.+..+.. ..++.+|.++.|.+ +|++.+ .++.+.|||..+|+++.++.
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 2222 588999999999999875 34688999999887 555444 57999999999999999887
No 318
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.46 E-value=5.8e-07 Score=85.09 Aligned_cols=132 Identities=20% Similarity=0.199 Sum_probs=99.2
Q ss_pred HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhhHHHHHHHHHHHhCCCHHHHHHHHHhhcccccccCHHHHHHHHH
Q 001295 38 MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQ 117 (1106)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~l~~~~~~~~~~l~~ 117 (1106)
...++++|++|+++.|+..++....--. .....+.|.|+.|+|+|||..++..+|+.+.|+.+.|......+.++.+..
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~-~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELL-KRNSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHH-hcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5688999999999999999987731111 112349999999999999999999999999999997765446778888889
Q ss_pred Hhccccccc--chhhccCCCchHHHHHHHHHHHhhhccCCCCcCcCCchhhHhhhH
Q 001295 118 LLTLENFRE--NEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSSL 171 (1106)
Q Consensus 118 ll~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~rl~~l~~qa~ 171 (1106)
++...+..+ ...+..+-+. ..|..+.+.+.+.+...-..|..+.|..++.+..
T Consensus 84 lL~~~~~~~~~~s~~~~l~~~-~~~~~la~~~~~~~l~~~~~~~~s~L~~~~~~g~ 138 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELLSP-ERREELAEEFNSAILKSYGLPKESPLEVILKAGL 138 (145)
T ss_pred HHHcCCcccccchHHHHHhCh-HHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHH
Confidence 988876554 2233333333 7788888888877776666666557888877643
No 319
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.46 E-value=2.5e-05 Score=81.93 Aligned_cols=227 Identities=16% Similarity=0.099 Sum_probs=135.4
Q ss_pred cCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeee
Q 001295 372 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 451 (1106)
Q Consensus 372 dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~ 451 (1106)
+|+|..||..+|+.+-...++ .... ...+. ..+++.++.+++.++.|..||..+|+.+....
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~----------------~~~~-~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~ 63 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLG----------------PGIG-GPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFD 63 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECS----------------SSCS-SEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECC----------------CCCC-Cccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEee
Confidence 688999999999888653221 0111 22211 23367777778899999999999998765332
Q ss_pred eeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEE-eccCCC---eEEEeccccCCceEEEEEecCCeE
Q 001295 452 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAP---VYSVCPHHKENIQFIFSTALDGKI 527 (1106)
Q Consensus 452 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~---v~~~~~~~~~~~~~l~s~~~dg~i 527 (1106)
+. +.+.......++ .++.++.++.|+.+|..+|+.+... ...... ......... +..++.+..++.|
T Consensus 64 -~~---~~~~~~~~~~~~---~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~l 134 (238)
T PF13360_consen 64 -LP---GPISGAPVVDGG---RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTSSGKL 134 (238)
T ss_dssp -CS---SCGGSGEEEETT---EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEETCSEE
T ss_pred -cc---ccccceeeeccc---ccccccceeeeEecccCCcceeeeeccccccccccccccCceEe--cCEEEEEeccCcE
Confidence 22 222221222334 3555557789999999999999884 332111 111111112 3578888889999
Q ss_pred EEEeCCCCCceeEeeCCCCee-EEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEcc
Q 001295 528 KAWLYDNLGSRVDYEAPGRWC-TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 606 (1106)
Q Consensus 528 ~iwd~~~~~~~~~~~~~~~~v-~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 606 (1106)
..+|.++++.+.......... ..+....+ ....+.+. ++ .++.+..++.+..+|+.+++.+....
T Consensus 135 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~-----------~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~~- 200 (238)
T PF13360_consen 135 VALDPKTGKLLWKYPVGEPRGSSPISSFSD-----------INGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSKP- 200 (238)
T ss_dssp EEEETTTTEEEEEEESSTT-SS--EEEETT-----------EEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEEEEC-
T ss_pred EEEecCCCcEEEEeecCCCCCCcceeeecc-----------cccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEec-
Confidence 999999988877766543221 10100000 00111111 23 56777777754444999998664333
Q ss_pred CCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCc
Q 001295 607 DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 643 (1106)
Q Consensus 607 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 643 (1106)
.. .+.. ....++..|++++.++.+..||+.+++
T Consensus 201 ~~---~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 201 IS---GIYS-LPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp SS----ECE-CEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred CC---CccC-CceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 11 1222 145678888888899999999999984
No 320
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.45 E-value=6.7e-05 Score=88.30 Aligned_cols=279 Identities=10% Similarity=0.119 Sum_probs=159.0
Q ss_pred cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295 742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 821 (1106)
Q Consensus 742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 821 (1106)
....|.++.|-.+...++.+...|.|.+-|..+ ...... ..-...|.+++||||
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et----------------------~~~eiv----g~vd~GI~aaswS~D 120 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPET----------------------LELEIV----GNVDNGISAASWSPD 120 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccc----------------------cceeee----eeccCceEEEeecCC
Confidence 346899999999999999999999988765442 211110 114678999999999
Q ss_pred CCEEEEEeCCeEEEEEcCCCceeeeecCC-----CCCeeEEEEecCCCceEEEeeCCCcEEEEEeecce-EEEEecCccc
Q 001295 822 DSYVMSASGGKISLFNMMTFKTMATFMPP-----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-VKSKLKGHSK 895 (1106)
Q Consensus 822 ~~~l~~~sdg~i~vwd~~~~~~~~~~~~~-----~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~-~~~~l~~h~~ 895 (1106)
+++++....+...++...+...+....-+ .+....+-|-. ....+ -| ..|...-.+....+ ......-| +
T Consensus 121 ee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGr-keTqf-rg-s~gr~~~~~~~~~ek~~~~~~~~-~ 196 (1265)
T KOG1920|consen 121 EELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGR-KETQF-RG-SEGRQAARQKIEKEKALEQIEQD-D 196 (1265)
T ss_pred CcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccc-cceee-ec-chhhhcccccccccccccchhhc-c
Confidence 99999888544444444444443322111 11122222221 00000 01 11111111111100 00111112 2
Q ss_pred CeeEEEEecCCCEEEEE-----cCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE----EeCCe
Q 001295 896 RITGLAFSHALNVLVSS-----GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV----VHETQ 966 (1106)
Q Consensus 896 ~V~~l~~s~d~~~l~s~-----s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~----~~d~~ 966 (1106)
.=++|.|--||.++|+. ...+.|+|||-+ +.. +..... ....-.+++|-|.|..+++ .+|+.
T Consensus 197 ~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~L------ns~se~--~~~l~~~LsWkPsgs~iA~iq~~~sd~~ 267 (1265)
T KOG1920|consen 197 HKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GAL------NSTSEP--VEGLQHSLSWKPSGSLIAAIQCKTSDSD 267 (1265)
T ss_pred CCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chh------hcccCc--ccccccceeecCCCCeEeeeeecCCCCc
Confidence 23568999999999873 333789999987 322 111111 1124478999999999998 25677
Q ss_pred EEEEecCCceEeeeccc--CCCCCCeeEEEECCCCCEEEE---EEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCcc
Q 001295 967 LAIFETTKLECVKQWVP--RESSAPITHATFSCDSQLVYA---CFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1041 (1106)
Q Consensus 967 v~i~d~~~~~~~~~~~~--~~h~~~v~~l~~s~d~~~l~t---~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1041 (1106)
|.+|.-+..+. ..+.. .....+|..++|+.++..||+ ......|++|-+.+..-..... -..+.. .
T Consensus 268 IvffErNGL~h-g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~--l~~~~~-----~- 338 (1265)
T KOG1920|consen 268 IVFFERNGLRH-GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQE--LQFSQK-----A- 338 (1265)
T ss_pred EEEEecCCccc-cccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEE--Eecccc-----c-
Confidence 99988654332 22211 122344999999999999987 4445569999988776433221 012211 1
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEeec
Q 001295 1042 PLVIAAHPQEPNEFALGLSDGGVHVFEPL 1070 (1106)
Q Consensus 1042 ~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~ 1070 (1106)
.+.|+|.....|..-..+|...+.++.
T Consensus 339 --~~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 339 --LLMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred --cccccCCCceeEEEEecCCcEEEEEEE
Confidence 267777666666665567766555543
No 321
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.41 E-value=2.9e-07 Score=102.75 Aligned_cols=199 Identities=17% Similarity=0.206 Sum_probs=143.8
Q ss_pred CceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCC--cE
Q 001295 841 FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS--QL 918 (1106)
Q Consensus 841 ~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg--~i 918 (1106)
.+..++|..|....+|++|+. +.++|++|+-.|.|++|++.+|.......+|..+|+-+.-+.||..+.+.+.-. ..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 344566777888899999999 889999999999999999999999999999999999999999998877655433 46
Q ss_pred EEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceEeeecccC--CCCCCeeEEEE
Q 001295 919 CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPR--ESSAPITHATF 995 (1106)
Q Consensus 919 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~~~~~~~~--~h~~~v~~l~~ 995 (1106)
.+|++...-. ....+ ..-.++.|+....+-+.+ ......+||+.++....++..+ +.+..-.+..|
T Consensus 1170 aLW~~~s~~~----~~Hsf-------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~F 1238 (1516)
T KOG1832|consen 1170 ALWDASSTGG----PRHSF-------DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHF 1238 (1516)
T ss_pred HHhccccccC----ccccc-------cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccccc
Confidence 7999876211 11111 244788898886655554 4467889999998876664321 12334478899
Q ss_pred CCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295 996 SCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus 996 s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
||+.++++ .|| -+||+...+.+.++..-..-. .=.|+| .|..++.-+ .|||+.+-.
T Consensus 1239 sP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~-----------~G~FHP-~g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1239 SPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYG-----------GGGFHP-SGNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred CCCcceEe---eCc--eeeeeccHHHHhhhhhheecc-----------cccccC-CCceEEeec-----hhhhhHHHH
Confidence 99998877 466 579999888777665211111 234788 467766655 578877654
No 322
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=5.6e-06 Score=92.68 Aligned_cols=191 Identities=15% Similarity=0.150 Sum_probs=134.9
Q ss_pred CCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCccccc
Q 001295 851 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 930 (1106)
Q Consensus 851 ~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~ 930 (1106)
...++|++++ +++++.|+.+|.|++++... .. .+...|+.. ..+|.+++||+.||+|.|-.+.+.+...
T Consensus 39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH---DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhh---cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 3457788885 47999999999999999763 33 444446554 5679999999999999999988755322
Q ss_pred ceeecccCCCCCCCCCCceEEEcCC-----CcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEE
Q 001295 931 NRFLQIPTGRTPTAQSDTRVQFHQD-----QIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC 1005 (1106)
Q Consensus 931 ~~~~~~~~~~~~~~~~i~~~~~s~d-----g~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~ 1005 (1106)
. ..-+ ..+.+++++|| .+.+++|++..+.++.-.-..-..........++|.++.| .|.++|=+
T Consensus 108 ~-----~df~----rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWa 176 (846)
T KOG2066|consen 108 Q-----YDFK----RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWA 176 (846)
T ss_pred e-----EecC----CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEe
Confidence 1 1111 36789999998 5667776554477776443332222222244789999999 57899988
Q ss_pred EcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecC
Q 001295 1006 FLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus 1006 s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
+.+| |+|||+.+++.+..+++....+ .....+-.+.|.+ ...|+.| +--+|+|..+..
T Consensus 177 nd~G-v~vyd~~~~~~l~~i~~p~~~~----R~e~fpphl~W~~--~~~LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 177 NDDG-VKVYDTPTRQRLTNIPPPSQSV----RPELFPPHLHWQD--EDRLVIG-WGDSVKICSIKK 234 (846)
T ss_pred cCCC-cEEEeccccceeeccCCCCCCC----CcccCCCceEecC--CCeEEEe-cCCeEEEEEEec
Confidence 8666 8999999999998888555333 3335555788986 4566655 667799999883
No 323
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.41 E-value=0.00086 Score=65.25 Aligned_cols=143 Identities=11% Similarity=0.085 Sum_probs=93.4
Q ss_pred EecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCCCeEE
Q 001295 358 FHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQ 437 (1106)
Q Consensus 358 ~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~ 437 (1106)
.-+|.+.+++.|+..+.+.--|..+|+..-+.. + ...|.+-+.- -|++++.|...|.+.
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i-----------------l---g~RiE~sa~v-vgdfVV~GCy~g~lY 76 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-----------------L---GVRIECSAIV-VGDFVVLGCYSGGLY 76 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehh-----------------h---CceeeeeeEE-ECCEEEEEEccCcEE
Confidence 445666689999999999999999988765311 1 1233332222 477899999999999
Q ss_pred EEEccCCceeeeeeeeccccCCee-EEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCce
Q 001295 438 IYSYHGGDEVRQHLEIDAHVGGVN-DIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ 516 (1106)
Q Consensus 438 iwd~~~~~~~~~~~~l~~h~~~V~-~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 516 (1106)
+.+.++|+.......+. .|. .....+++. ++..|+.|++.+.-|.++..++...+-..+...+-++.+. ++
T Consensus 77 fl~~~tGs~~w~f~~~~----~vk~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-~~- 148 (354)
T KOG4649|consen 77 FLCVKTGSQIWNFVILE----TVKVRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-DG- 148 (354)
T ss_pred EEEecchhheeeeeehh----hhccceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCC-Cc-
Confidence 99999997765433322 222 223456777 8999999999999999999999886643332222233222 22
Q ss_pred EEEEEecCCeEEE
Q 001295 517 FIFSTALDGKIKA 529 (1106)
Q Consensus 517 ~l~s~~~dg~i~i 529 (1106)
.|+.+...|.+.-
T Consensus 149 sly~a~t~G~vla 161 (354)
T KOG4649|consen 149 SLYAAITAGAVLA 161 (354)
T ss_pred eEEEEeccceEEE
Confidence 3444445554443
No 324
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.39 E-value=2.1e-05 Score=88.35 Aligned_cols=222 Identities=11% Similarity=0.033 Sum_probs=139.0
Q ss_pred cCCCEEEEEe--CCeEEEEEcCCCceeeeecC------C---------CCCee-----EEEEecCCCceEEE-eeCCCcE
Q 001295 820 KNDSYVMSAS--GGKISLFNMMTFKTMATFMP------P---------PPAAT-----FLAFHPQDNNIIAI-GMDDSSI 876 (1106)
Q Consensus 820 ~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~------~---------~~~v~-----~l~~s~~d~~~la~-g~~dg~v 876 (1106)
.||+||..-. +..|...++...++-+.+.- | ...|. .+=+++ ||+.+.. .-..+.+
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~Plpn-DGk~l~~~~ey~~~v 217 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPN-DGKDLDDPKKYRSLF 217 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCC-CCCEeecccceeEEE
Confidence 4888998887 45666666665554333211 1 11121 233445 5554432 2334577
Q ss_pred EEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCC---C-cEEEEeCCCcccccceeecccCCCCCCCCCCceEEE
Q 001295 877 QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD---S-QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 952 (1106)
Q Consensus 877 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D---g-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 952 (1106)
.+.|..+.+...++.--. .-..+++++||+++++.+.+ | ++..-+... ......+... ..-++
T Consensus 218 SvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e--~d~~vvfni~----------~iea~ 284 (635)
T PRK02888 218 TAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE--RDWVVVFNIA----------RIEEA 284 (635)
T ss_pred EEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeecccc--CceEEEEchH----------HHHHh
Confidence 788888777766654322 34568899999999888632 2 222222211 1110011000 01134
Q ss_pred cCCCcEEEEEeCCeEEEEecCC-----ceEeeecccCCCCCCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCcee-----
Q 001295 953 HQDQIHFLVVHETQLAIFETTK-----LECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKL----- 1021 (1106)
Q Consensus 953 s~dg~~l~~~~d~~v~i~d~~~-----~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s-~Dg~i~vwd~~~~~~----- 1021 (1106)
.++|++..+ .++.|.+.|..+ ...+..+.. ......+.+||||+++++++ .+.+|.|.|+.+.+.
T Consensus 285 vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 285 VKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhCCCEEEE-CCCEEEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 557887665 467899999998 455555543 56788999999999976555 588999999988663
Q ss_pred -------EEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecC
Q 001295 1022 -------RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus 1022 -------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
..+++ + | .-|+..+|.+ +|+...|--.|..|..|++.+
T Consensus 361 ~~~~~~vvaeve----v--G-----lGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPE----L--G-----LGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeec----c--C-----CCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 33333 2 2 4477899988 688899999999999999987
No 325
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=4.5e-05 Score=78.51 Aligned_cols=223 Identities=13% Similarity=0.170 Sum_probs=130.7
Q ss_pred ccCCCCcCeEEEEEccCCC-EEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEE
Q 001295 407 LVKDPGVSVNRVIWSPDGS-LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 485 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~spdg~-~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~i 485 (1106)
++.+|...|..++|||..+ +|..++.+.+|+|.|+++...+. .+..| ..+++++|.-|... ++..|...|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 6789999999999999766 78889999999999999976655 45566 78999999999876 8899999999999
Q ss_pred EeCCCCce-eEEEec--cCCCeEEEecccc----CCceEEEEEecCCeEEEEeCCCCCc--eeEeeCC-CCeeEEEEEec
Q 001295 486 WDATNGAK-QYIFEG--HEAPVYSVCPHHK----ENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAP-GRWCTTMAYSA 555 (1106)
Q Consensus 486 wd~~~~~~-~~~~~~--h~~~v~~~~~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~-~~~v~~~~~s~ 555 (1106)
+|++..+- +..+.+ ...+|..++..+. ..|.+++..+.+ +.+|++.-... ....... .+.+.++.+.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99985432 233322 2234443332110 112233333322 44555432111 1111111 11222222222
Q ss_pred CCCeEEE----------------------------------eeeccc---eeEEEEcCCCCEEEE-EECCCeEEEEECCC
Q 001295 556 DGTRTYQ----------------------------------GFRKRS---LGVVQFDTTKNRFLA-AGDDFSIKFWDMDS 597 (1106)
Q Consensus 556 ~~~~~~~----------------------------------~~~~~~---i~~~~~~~~~~~l~~-~~~d~~i~iwd~~~ 597 (1106)
-.+.++. |..... -..+.-.++.++++. ++..+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 1111110 110000 011222334455554 55678999999999
Q ss_pred cceeEEEccCCCCCCcCeEEEcc-CC-CEEEEEeCCCcEEEEEcc
Q 001295 598 VQLLTSIDADGGLPASPRIRFNK-DG-CLLAVSTNDNGIKILATS 640 (1106)
Q Consensus 598 ~~~~~~~~~~~~~~~v~~v~~s~-~~-~~l~~~~~dg~i~iwd~~ 640 (1106)
++.+.++.... +|.+++... ++ .+|++-+ |..++||..+
T Consensus 421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALSE---PVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred hheeeecccCc---ceeecceeecCCcchhhhee-cceEEEEecC
Confidence 99999987652 466655544 33 4555544 5688888654
No 326
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.33 E-value=7.4e-06 Score=92.66 Aligned_cols=181 Identities=15% Similarity=0.174 Sum_probs=133.5
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeE
Q 001295 821 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 899 (1106)
Q Consensus 821 ~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 899 (1106)
++..++.|+ ...+..+|+.+.+..+......+.|+-+.. +++++.+|...|+|.+-|..+.+.++++.+|++.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 344566665 677888999988887777655555666665 6789999999999999999999999999999999987
Q ss_pred EEEecCCCEEEEEcC---------CCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCC--CcEEEEEeCCeEE
Q 001295 900 LAFSHALNVLVSSGA---------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLVVHETQLA 968 (1106)
Q Consensus 900 l~~s~d~~~l~s~s~---------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d--g~~l~~~~d~~v~ 968 (1106)
+.. .|+.|+++|. |..|+|||++..+... ++++..+ ..-+.|.|. .+..+++..|...
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~--PI~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS--PIQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccC--CcccccC-------chhhhhcccccceEEEEeccccee
Confidence 665 5889999875 5678999999854322 3333322 245677775 3444447888888
Q ss_pred EEecCCce-E-eeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEE
Q 001295 969 IFETTKLE-C-VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1015 (1106)
Q Consensus 969 i~d~~~~~-~-~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd 1015 (1106)
+-|..+.. . ........-+..+..+++|+.+..||.|..+|.|.+|.
T Consensus 292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 88843321 1 11111122255699999999999999999999999997
No 327
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.32 E-value=3e-06 Score=85.03 Aligned_cols=153 Identities=14% Similarity=0.132 Sum_probs=112.9
Q ss_pred EEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCC
Q 001295 868 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD 947 (1106)
Q Consensus 868 a~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i 947 (1106)
++.+.+..|-+-++.+|-. ..|. ..+.|.++.|...+.++..|...|.|.+.|++...+-...+....... ..|
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~----Ssv 301 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHD----SSV 301 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcC----cch
Confidence 4455677888889888643 3444 567799999998899999999999999999988643333222222211 366
Q ss_pred ceEEEcC-CCcEEEE-EeCCeEEEEecCCceE---eeecccCCCCCC--eeEEEECCCCCEEEEEEcCCeEEEEEcCCce
Q 001295 948 TRVQFHQ-DQIHFLV-VHETQLAIFETTKLEC---VKQWVPRESSAP--ITHATFSCDSQLVYACFLDATVCVFSAANLK 1020 (1106)
Q Consensus 948 ~~~~~s~-dg~~l~~-~~d~~v~i~d~~~~~~---~~~~~~~~h~~~--v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~ 1020 (1106)
+++..-. ++.+|.+ ..+|+|.+||.+.-++ +.++. +|... -.-+.+.+....++++++|...|||.+..|.
T Consensus 302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe--GHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE--GHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee--cccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence 7776655 5666666 6899999999998888 66665 66433 2334456777888999999999999999999
Q ss_pred eEEeeCCC
Q 001295 1021 LRCRINPS 1028 (1106)
Q Consensus 1021 ~~~~~~~~ 1028 (1106)
++++++..
T Consensus 380 Ll~tipf~ 387 (425)
T KOG2695|consen 380 LLCTIPFP 387 (425)
T ss_pred eeeccCCC
Confidence 99998833
No 328
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.27 E-value=2.4e-06 Score=59.50 Aligned_cols=38 Identities=24% Similarity=0.419 Sum_probs=34.5
Q ss_pred eEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEE
Q 001295 976 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1015 (1106)
Q Consensus 976 ~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd 1015 (1106)
+++..+. +|..+|++|+|+|++.+|++++.|++|++||
T Consensus 2 ~~~~~~~--~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFR--GHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEE--SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEc--CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4556665 8999999999999999999999999999997
No 329
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=6.7e-05 Score=84.96 Aligned_cols=205 Identities=15% Similarity=0.171 Sum_probs=130.7
Q ss_pred EEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccC-eeEEEEecCCCEEEEEcCCCc-----EEEEeCCCccccc-
Q 001295 858 AFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQK- 930 (1106)
Q Consensus 858 ~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~~l~s~s~Dg~-----i~vwd~~~~~~~~- 930 (1106)
+|++ ++..+|.|+.+|.|.+++ .+.+.+..++++... |+.+-...+..+|++.+.|+. |+||+++.-+...
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcC-CCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 4566 778999999999999887 445666888888777 555554445579999888764 8999998754333
Q ss_pred ceee---cccCCCCC-CCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCc--eEeeecccCCCCCCeeEEEECCCCCEEE
Q 001295 931 NRFL---QIPTGRTP-TAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKL--ECVKQWVPRESSAPITHATFSCDSQLVY 1003 (1106)
Q Consensus 931 ~~~~---~~~~~~~~-~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~--~~~~~~~~~~h~~~v~~l~~s~d~~~l~ 1003 (1106)
..++ .......+ .+.++..++.+.+-+.+|+| .+|.|..+.-+-. +..+.-......++|+.+++..|++.++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 2233 22221111 23567889999999999997 7888888753221 1112111123378999999999999844
Q ss_pred EEEcCCeEEEEEcCCcee-EEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCCCcc
Q 001295 1004 ACFLDATVCVFSAANLKL-RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1076 (1106)
Q Consensus 1004 t~s~Dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~~~~ 1076 (1106)
.+..-..|.+|.+..... .+.+. +++.... +.+|++..+. ++.++ +..|.+++.+.-+..|
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld--------~~G~~ln--Css~~~~t~q-fIca~-~e~l~fY~sd~~~~cf 249 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLD--------NNGISLN--CSSFSDGTYQ-FICAG-SEFLYFYDSDGRGPCF 249 (933)
T ss_pred EEEecceeEEEEecCCCcceeeec--------cCCccce--eeecCCCCcc-EEEec-CceEEEEcCCCcceee
Confidence 444567899999884331 22222 2233344 6667763332 44443 5678898887655333
No 330
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=0.00014 Score=74.94 Aligned_cols=98 Identities=16% Similarity=0.168 Sum_probs=80.2
Q ss_pred EEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCc
Q 001295 436 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 515 (1106)
Q Consensus 436 v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 515 (1106)
|++.+..+-+... -+.+|...|..++|||...- ++..++.+..|+|.|+++..++..+..+ ..+++++|.-+. .
T Consensus 175 v~~l~~~~fkssq---~lp~~g~~IrdlafSp~~~G-Ll~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde-~ 248 (463)
T KOG1645|consen 175 VQKLESHDFKSSQ---ILPGEGSFIRDLAFSPFNEG-LLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDE-R 248 (463)
T ss_pred eEEeccCCcchhh---cccccchhhhhhccCccccc-eeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCC-c
Confidence 5555554443332 46688899999999998875 6888999999999999999999999888 899999997665 5
Q ss_pred eEEEEEecCCeEEEEeCCCCCcee
Q 001295 516 QFIFSTALDGKIKAWLYDNLGSRV 539 (1106)
Q Consensus 516 ~~l~s~~~dg~i~iwd~~~~~~~~ 539 (1106)
++|+.|...|.|.+||++..+...
T Consensus 249 h~IYaGl~nG~VlvyD~R~~~~~~ 272 (463)
T KOG1645|consen 249 HVIYAGLQNGMVLVYDMRQPEGPL 272 (463)
T ss_pred ceeEEeccCceEEEEEccCCCchH
Confidence 899999999999999999765543
No 331
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.12 E-value=3.7e-06 Score=51.54 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhHhcHHHHHHHHHHhh
Q 001295 6 RELVFLILQFLDEEKFKETVHKLEQES 32 (1106)
Q Consensus 6 ~~~~~li~q~L~~~g~~~s~~~L~~Es 32 (1106)
+++.+||++||.+.||.+||.+|++||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999997
No 332
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.00022 Score=80.40 Aligned_cols=185 Identities=13% Similarity=0.139 Sum_probs=123.5
Q ss_pred eEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEE
Q 001295 746 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV 825 (1106)
Q Consensus 746 i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l 825 (1106)
+.+.++ .++.++.|+.+|.+++++.+.. .... + .|... ..+|.++
T Consensus 42 is~~av--~~~~~~~GtH~g~v~~~~~~~~-----------------------~~~~-~---~~s~~------~~~Gey~ 86 (846)
T KOG2066|consen 42 ISCCAV--HDKFFALGTHRGAVYLTTCQGN-----------------------PKTN-F---DHSSS------ILEGEYV 86 (846)
T ss_pred HHHHHh--hcceeeeccccceEEEEecCCc-----------------------cccc-c---ccccc------ccCCceE
Confidence 344444 3456888999999999875421 0000 0 02221 5689999
Q ss_pred EEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecC----CCceEEEeeCCCcEEEEEeec-ce-EEEEecCcccCee
Q 001295 826 MSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ----DNNIIAIGMDDSSIQIYNVRV-DE-VKSKLKGHSKRIT 898 (1106)
Q Consensus 826 ~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~----d~~~la~g~~dg~v~iwd~~~-~~-~~~~l~~h~~~V~ 898 (1106)
++++ ||+|.|..+.+.+...++. -..++.+++++|+ ..+.+++|+.-| +.++.-.= |. .-..+..-.++|.
T Consensus 87 asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~ 164 (846)
T KOG2066|consen 87 ASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIH 164 (846)
T ss_pred EEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceE
Confidence 9999 8999999998877766665 3457999999993 156788899888 87876432 11 1123555678999
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecC
Q 001295 899 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT 973 (1106)
Q Consensus 899 ~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~ 973 (1106)
++.|. |.++|-++.+| |+|||+.+.+... .+...........-...+.|.++.+. +.|-..+|+|..++
T Consensus 165 ~i~W~--g~lIAWand~G-v~vyd~~~~~~l~--~i~~p~~~~R~e~fpphl~W~~~~~L-VIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 165 SIKWR--GNLIAWANDDG-VKVYDTPTRQRLT--NIPPPSQSVRPELFPPHLHWQDEDRL-VIGWGDSVKICSIK 233 (846)
T ss_pred EEEec--CcEEEEecCCC-cEEEeccccceee--ccCCCCCCCCcccCCCceEecCCCeE-EEecCCeEEEEEEe
Confidence 99995 88999999998 9999998865432 12222222222234467888877765 44555677777776
No 333
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.09 E-value=0.047 Score=63.91 Aligned_cols=467 Identities=11% Similarity=0.095 Sum_probs=239.9
Q ss_pred CeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEe--ccCCCeEEEeccccCCce----EEEEEecCCeEEEEeC
Q 001295 459 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE--GHEAPVYSVCPHHKENIQ----FIFSTALDGKIKAWLY 532 (1106)
Q Consensus 459 ~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~----~l~s~~~dg~i~iwd~ 532 (1106)
.++..+.+.+.. .++.++.++.+...++..+. ++... .....|.|+.++|.++++ +++.|..+..+.+-
T Consensus 489 ~~ti~~~~~n~s--qVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l-- 563 (1096)
T KOG1897|consen 489 KITIGVVSANAS--QVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMIL-- 563 (1096)
T ss_pred ceEEEEEeecce--EEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEE--
Confidence 344444444444 35555556777777777665 22222 234678898888765543 46666544433332
Q ss_pred CCCCceeEeeCCCCeeEEEEEecCCCeEEEeee-----ccceeEEEEcCCCCEEEEEECCCeEEEEECC--CcceeEEEc
Q 001295 533 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR-----KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD--SVQLLTSID 605 (1106)
Q Consensus 533 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~ 605 (1106)
.+.||...+..... ...+-...+-.+..+|+++..||.+.-|.+. +|..-..-+
T Consensus 564 -------------------~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk 624 (1096)
T KOG1897|consen 564 -------------------TFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKK 624 (1096)
T ss_pred -------------------EECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccc
Confidence 23333321111100 1123334444556789999999998777554 443332222
Q ss_pred cCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccccc
Q 001295 606 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD 685 (1106)
Q Consensus 606 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1106)
.+-+..++.--.|+..++.-+.+..|.-..+|..+.. -.+..+.-..-. .+++..
T Consensus 625 ~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~k-Lv~spls~kev~----------~~c~f~-------------- 679 (1096)
T KOG1897|consen 625 VTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGK-LVYSPLSLKEVN----------HMCPFN-------------- 679 (1096)
T ss_pred cccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCc-EEEeccchHHhh----------hhcccc--------------
Confidence 2333445555566665555555555566666644322 111111000000 000000
Q ss_pred ccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCc
Q 001295 686 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA 765 (1106)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 765 (1106)
++...-.+.....+.+++..++......... +. -......+++.+....+.+.+...
T Consensus 680 -----------------s~a~~d~l~~~~~~~l~i~tid~iqkl~irt-vp-----l~~~prrI~~q~~sl~~~v~s~r~ 736 (1096)
T KOG1897|consen 680 -----------------SDAYPDSLASANGGALTIGTIDEIQKLHIRT-VP-----LGESPRRICYQESSLTFGVLSNRI 736 (1096)
T ss_pred -----------------cccCCceEEEecCCceEEEEecchhhcceee-ec-----CCCChhheEecccceEEEEEeccc
Confidence 0111122233334667777776544322211 21 123445566666444444443321
Q ss_pred eEEEeeccccccCCCCccccccCccccCCCCCCcccc-ccCCCCCCCCeeEEEEecC-CCEEEEEe-----------CCe
Q 001295 766 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN-DVTDSNPEEAVPCFALSKN-DSYVMSAS-----------GGK 832 (1106)
Q Consensus 766 ~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~v~~l~~s~~-~~~l~~~s-----------dg~ 832 (1106)
.... .. .+.......++++|..+-+.... .+...+....+.++.|..| +.++++|. .|.
T Consensus 737 e~~~------~~--~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GR 808 (1096)
T KOG1897|consen 737 ESSA------EY--YGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGR 808 (1096)
T ss_pred ccch------hh--cCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccce
Confidence 1110 00 11111222345566655543332 1111111223444457766 77888772 277
Q ss_pred EEEEEcCCCceeeeecCC--CCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEE
Q 001295 833 ISLFNMMTFKTMATFMPP--PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV 910 (1106)
Q Consensus 833 i~vwd~~~~~~~~~~~~~--~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~ 910 (1106)
|.||.+.....+.....+ .+.+.++..- +|++||. -+..|++|+..+.+.++.-..|...+..+...-.|..++
T Consensus 809 Iivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~ 884 (1096)
T KOG1897|consen 809 IIVFEFEELNSLELVAETVVKGAVYALVEF--NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIA 884 (1096)
T ss_pred EEEEEEecCCceeeeeeeeeccceeehhhh--CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEE
Confidence 899988874444433222 3445555443 5777764 467899999999877777778999999999999999999
Q ss_pred EEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCc----------eEeee
Q 001295 911 SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL----------ECVKQ 980 (1106)
Q Consensus 911 s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~----------~~~~~ 980 (1106)
.|+--+.+.+-..+..+- .+......-.+ ...+++.+-.+..++.+-.++.+.+-...+. +.+..
T Consensus 885 VgDlm~Sitll~y~~~eg---~f~evArD~~p--~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~ 959 (1096)
T KOG1897|consen 885 VGDLMRSITLLQYKGDEG---NFEEVARDYNP--NWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVGK 959 (1096)
T ss_pred EeeccceEEEEEEeccCC---ceEEeehhhCc--cceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhcccceee
Confidence 999888877766554331 12222222222 4677888888888887766666555433221 01111
Q ss_pred cccC------CCCCCeeEE--EECCCCCEEEEEEcCCeEEEE
Q 001295 981 WVPR------ESSAPITHA--TFSCDSQLVYACFLDATVCVF 1014 (1106)
Q Consensus 981 ~~~~------~h~~~v~~l--~~s~d~~~l~t~s~Dg~i~vw 1014 (1106)
|..+ .|..-|.++ ..+|-+..+..|..+|.|-+-
T Consensus 960 ~hlGelvn~f~hg~lv~~~~~s~~~~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen 960 FHLGELVNKFRHGSLVMQLGDSMIPLEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred EEeccceeeeeecceEeeccccccCCCCcEEEEEccceEEEE
Confidence 1110 133334441 334555567888889988765
No 334
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.06 E-value=7e-05 Score=85.08 Aligned_cols=185 Identities=11% Similarity=0.111 Sum_probs=129.5
Q ss_pred CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCC
Q 001295 423 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 502 (1106)
Q Consensus 423 dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 502 (1106)
++..++-|+-...+..+|+.+.+..+. ..-..+.|.-++. +++ ++.+|...|+|.+-|..+.+.++++..|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~---~~v~a~~v~imR~--Nnr--~lf~G~t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRT---TNVSASGVTIMRY--NNR--NLFCGDTRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeee---eeccCCceEEEEe--cCc--EEEeecccceEEeecCCcCceeeeeecccc
Confidence 455677788788899999998776542 2222334655554 566 799999999999999999999999999999
Q ss_pred CeEEEeccccCCceEEEEEec---------CCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEE
Q 001295 503 PVYSVCPHHKENIQFIFSTAL---------DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 573 (1106)
Q Consensus 503 ~v~~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 573 (1106)
.|.++.. .|+.|++||. |.-|++||++..+.+.-+..+.++ .-+.|.|.-
T Consensus 219 siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl---------------- 277 (1118)
T KOG1275|consen 219 SISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSL---------------- 277 (1118)
T ss_pred ceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccc----------------
Confidence 9998864 3468888876 456899999987665443333221 122222221
Q ss_pred EcCCCCEEEEEECCCeEEEEECCC-cce-eEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEc
Q 001295 574 FDTTKNRFLAAGDDFSIKFWDMDS-VQL-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 639 (1106)
Q Consensus 574 ~~~~~~~l~~~~~d~~i~iwd~~~-~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 639 (1106)
...+++++..|...+-|..+ +.+ ...+..+-....+..++++++|+.++.|..+|.|.+|.-
T Consensus 278 ----~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 278 ----TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ----cceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 13477788888888888322 111 222222222335889999999999999999999999973
No 335
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.06 E-value=0.0031 Score=69.98 Aligned_cols=103 Identities=17% Similarity=0.288 Sum_probs=62.8
Q ss_pred ecCCCeEEEEE--------eccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEE
Q 001295 359 HPVQQTLLLVG--------TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 430 (1106)
Q Consensus 359 sp~g~~llatg--------~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 430 (1106)
|||++++|+.- +..+.+.|||+++++... +......+....|||||+++|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 78999866532 123578899998876543 12225678899999999999988
Q ss_pred eCCCeEEEEEccCCceeeeeeeeccc----------------cCCeeEEEEcCCCCceEEEEe-cCCCcEEEE
Q 001295 431 YSRHIVQIYSYHGGDEVRQHLEIDAH----------------VGGVNDIAFSHPNKQLCVITC-GDDKTIKVW 486 (1106)
Q Consensus 431 ~~d~~v~iwd~~~~~~~~~~~~l~~h----------------~~~V~~~~~s~d~~~~~l~s~-~~d~~i~iw 486 (1106)
. ++.|.+++..+++..+. +..|- -+.-..+-||||+++ |+.. -++..|..+
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~ 128 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEY 128 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EE
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceE
Confidence 6 57899999888754432 22220 122366889999995 4333 334444444
No 336
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.05 E-value=0.0007 Score=74.71 Aligned_cols=281 Identities=12% Similarity=0.171 Sum_probs=141.8
Q ss_pred ceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCcccc------------ccCccccCCC--------CCCcccccc
Q 001295 745 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATA------------SVAPQLWQPP--------SGIMMTNDV 804 (1106)
Q Consensus 745 ~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~------------~~~~~~w~~~--------~~~~~~~~~ 804 (1106)
.|+.+.|+++...++++...|.+.||.+..+.......... ...-.+-|+. .|......+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 57899999998899999999999999988765443000000 0011122221 122111112
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeee--ecC------CCCCeeEEEEec----CCC---ceEE
Q 001295 805 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT--FMP------PPPAATFLAFHP----QDN---NIIA 868 (1106)
Q Consensus 805 ~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~--~~~------~~~~v~~l~~s~----~d~---~~la 868 (1106)
.. ..++|++++.| |--++|+|. +|.+.|.|++....+.. +.. ....++++.|+. +|+ -++.
T Consensus 83 ~~--~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DA--KQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp -----S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred ec--cCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 22 47899999997 556999998 89999999987776654 221 234688888872 133 4788
Q ss_pred EeeCCCcEEEEEeec---ceEEEEe----cCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCccccccee--ec-ccC
Q 001295 869 IGMDDSSIQIYNVRV---DEVKSKL----KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF--LQ-IPT 938 (1106)
Q Consensus 869 ~g~~dg~v~iwd~~~---~~~~~~l----~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~--~~-~~~ 938 (1106)
+|+..|.+.+|.+.- +.....+ ..+.++|..+. ..+.++++...... ++ ...
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~------------------~i~~~~G~~a~At~~~~~~l~~ 221 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSII------------------PINADTGESALATISAMQGLSK 221 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEE------------------EEETTT--B-B-BHHHHHGGGG
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEE------------------EEECCCCCcccCchhHhhcccc
Confidence 899999999998752 2111111 12223332222 22333332211100 00 000
Q ss_pred CCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEEC-----CCCCEEEEEEcCCeEEE
Q 001295 939 GRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFS-----CDSQLVYACFLDATVCV 1013 (1106)
Q Consensus 939 ~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s-----~d~~~l~t~s~Dg~i~v 1013 (1106)
+. +...+++++.+..++++...+.+...... ........+++- ..+..|++-..+|.|++
T Consensus 222 g~-------------~i~g~vVvvSe~~irv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i 286 (395)
T PF08596_consen 222 GI-------------SIPGYVVVVSESDIRVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRI 286 (395)
T ss_dssp T-----------------EEEEEE-SSEEEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEE
T ss_pred CC-------------CcCcEEEEEcccceEEEeCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEE
Confidence 10 11235666889999999998887766544 112223334442 35667888899999999
Q ss_pred EEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEee
Q 001295 1014 FSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1069 (1106)
Q Consensus 1014 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~ 1069 (1106)
+.+...+.+..+....... ..... ..++++ +|+.++-.+ ...+.++.+
T Consensus 287 ~SLP~Lkei~~~~l~~~~d----~~~~~--~ssis~-~Gdi~~~~g-psE~~l~sv 334 (395)
T PF08596_consen 287 YSLPSLKEIKSVSLPPPLD----SRRLS--SSSISR-NGDIFYWTG-PSEIQLFSV 334 (395)
T ss_dssp EETTT--EEEEEE-SS-------HHHHT--T-EE-T-TS-EEEE-S-SSEEEEEEE
T ss_pred EECCCchHhhcccCCCccc----ccccc--ccEECC-CCCEEEEeC-cccEEEEEE
Confidence 9999999998877321110 11122 355666 578776665 344444444
No 337
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.05 E-value=0.00059 Score=76.00 Aligned_cols=121 Identities=10% Similarity=0.031 Sum_probs=93.3
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 428 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 428 (1106)
|...|.--+++..+++ ++.|+.-|.+.+++-.+++.... ...+-.+.+..+..|++..++|
T Consensus 32 ~~~~v~lTc~dst~~~-l~~GsS~G~lyl~~R~~~~~~~~------------------~~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEY-LAMGSSAGSVYLYNRHTGEMRKL------------------KNEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCce-EEEecccceEEEEecCchhhhcc------------------cccCccceEEEEEecchhHhhh
Confidence 4556666677888886 99999999999999887766542 1233455677788999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeee--e-ccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC
Q 001295 429 VAYSRHIVQIYSYHGGDEVRQHLE--I-DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 490 (1106)
Q Consensus 429 s~~~d~~v~iwd~~~~~~~~~~~~--l-~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 490 (1106)
.|+..|.|.|+-+..+........ + ..|...|++++|++|+. .+.+|...|+|.+-.+.+
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEech
Confidence 999999999998876433222111 1 23778999999999999 799999999999888776
No 338
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.02 E-value=0.004 Score=72.29 Aligned_cols=214 Identities=12% Similarity=0.090 Sum_probs=112.6
Q ss_pred CCEEEEEeCCCeEEEEEccCCceeeeeeeecc---ccCCe--eEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEe
Q 001295 424 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDA---HVGGV--NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 498 (1106)
Q Consensus 424 g~~las~~~d~~v~iwd~~~~~~~~~~~~l~~---h~~~V--~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 498 (1106)
+..+..++.++.|.-.|..+|+.+-....-.. +...+ ..++.. ++. .++.++.++.|.-+|.++|+.+..+.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~--~V~v~~~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPR--KVFFGTFDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCC--eEEEecCCCeEEEEECCCCCEeeeec
Confidence 44566677789999999999886543211100 00011 011221 213 47777889999999999999987776
Q ss_pred ccCCC--eEEEeccccCCceEEEEEe---------cCCeEEEEeCCCCCceeEeeCCCCeeEEEE-EecCCCeEEEeeec
Q 001295 499 GHEAP--VYSVCPHHKENIQFIFSTA---------LDGKIKAWLYDNLGSRVDYEAPGRWCTTMA-YSADGTRTYQGFRK 566 (1106)
Q Consensus 499 ~h~~~--v~~~~~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~-~s~~~~~~~~~~~~ 566 (1106)
..... -..+.-.+.-.+..++.++ .+|.+..+|..+++.+..+.........+. +.... ... +...
T Consensus 138 ~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~-~~~-~~~g 215 (488)
T cd00216 138 NNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDR-QMW-GPGG 215 (488)
T ss_pred CCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCc-cee-cCCC
Confidence 43221 0001101111113455553 368899999999888776654321110000 00000 000 0000
Q ss_pred cc-eeEEEEcCCCCEEEEEECCC------------------eEEEEECCCcceeEEEccCCCCC----CcCeEEEc----
Q 001295 567 RS-LGVVQFDTTKNRFLAAGDDF------------------SIKFWDMDSVQLLTSIDADGGLP----ASPRIRFN---- 619 (1106)
Q Consensus 567 ~~-i~~~~~~~~~~~l~~~~~d~------------------~i~iwd~~~~~~~~~~~~~~~~~----~v~~v~~s---- 619 (1106)
.. -....+++.+..++.++.++ .|.-+|+.+|+.+-.++...+.. ......+.
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence 01 11234455555677766554 78889999999887765321100 00011111
Q ss_pred cCCC---EEEEEeCCCcEEEEEccCC
Q 001295 620 KDGC---LLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 620 ~~~~---~l~~~~~dg~i~iwd~~~~ 642 (1106)
-++. .+++++.+|.+...|..+|
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG 321 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTG 321 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCC
Confidence 1333 5677778888888888777
No 339
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.01 E-value=0.00055 Score=75.94 Aligned_cols=286 Identities=14% Similarity=0.144 Sum_probs=149.5
Q ss_pred CCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCC
Q 001295 587 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 666 (1106)
Q Consensus 587 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (1106)
.+.+.+||+.+++....... ...+....|+|+|+.++.... +.|.+++..++....-+..+ ...
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~---~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~~~~~lT~dg-~~~----------- 85 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP---PPKLQDAKWSPDGKYIAFVRD-NNLYLRDLATGQETQLTTDG-EPG----------- 85 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E---ETTBSEEEE-SSSTEEEEEET-TEEEEESSTTSEEEESES---TTT-----------
T ss_pred ceeEEEEecCCCceEECcCC---ccccccceeecCCCeeEEEec-CceEEEECCCCCeEEecccc-cee-----------
Confidence 46799999999765544433 235788999999999998875 78998887666211111111 000
Q ss_pred cCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccce
Q 001295 667 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 746 (1106)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i 746 (1106)
+..|-.| |-.++ .--..-
T Consensus 86 ------------------------------------------i~nG~~d-----wvyeE---------------Ev~~~~ 103 (353)
T PF00930_consen 86 ------------------------------------------IYNGVPD-----WVYEE---------------EVFDRR 103 (353)
T ss_dssp ------------------------------------------EEESB-------HHHHH---------------HTSSSS
T ss_pred ------------------------------------------EEcCccc-----eeccc---------------cccccc
Confidence 0000000 00000 000112
Q ss_pred EEEEEcCCCceEEEeecC-ceEEEeeccccc-------------cCCCCccccccCccccCCCCCCccccccCC--CCCC
Q 001295 747 SRLIFTNSGNAILALASN-AIHLLWKWQRTE-------------RNSSGKATASVAPQLWQPPSGIMMTNDVTD--SNPE 810 (1106)
Q Consensus 747 ~~~~~s~~~~~l~~~~~d-g~i~iw~~~~~~-------------~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~--~~~~ 810 (1106)
..+.||||+++|+...-| ..+..+.+.... ....|..-....+.++++.+++........ ....
T Consensus 104 ~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~ 183 (353)
T PF00930_consen 104 SAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQD 183 (353)
T ss_dssp BSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSS
T ss_pred cceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCc
Confidence 457788888877766654 434433332110 111223333445667788777654322220 1145
Q ss_pred CCeeEEEEecCCCEEEEE-e--C---CeEEEEEcCCCceeeeecC-CC---CCeeEEEEe-cCCCceEEEeeCCCcEEEE
Q 001295 811 EAVPCFALSKNDSYVMSA-S--G---GKISLFNMMTFKTMATFMP-PP---PAATFLAFH-PQDNNIIAIGMDDSSIQIY 879 (1106)
Q Consensus 811 ~~v~~l~~s~~~~~l~~~-s--d---g~i~vwd~~~~~~~~~~~~-~~---~~v~~l~~s-~~d~~~la~g~~dg~v~iw 879 (1106)
.-+..+.|.++++.|+.. . + -.+.+.|..++.+...... .. ..-....|. ++++.+|.....||.-+||
T Consensus 184 ~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly 263 (353)
T PF00930_consen 184 YYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLY 263 (353)
T ss_dssp EEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEE
T ss_pred cCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEE
Confidence 668899999999944433 3 2 2377778877655433221 11 223355665 6567777777788866665
Q ss_pred Eee--cceEEEEecCcccCeeE-EEEecCCCEEE-EEcCCC--cEEEE--eCC-CcccccceeecccCCCCCCCCCC-ce
Q 001295 880 NVR--VDEVKSKLKGHSKRITG-LAFSHALNVLV-SSGADS--QLCVW--SSD-GWEKQKNRFLQIPTGRTPTAQSD-TR 949 (1106)
Q Consensus 880 d~~--~~~~~~~l~~h~~~V~~-l~~s~d~~~l~-s~s~Dg--~i~vw--d~~-~~~~~~~~~~~~~~~~~~~~~~i-~~ 949 (1106)
-+. .+. ...+....-.|+. +.|+++++.|. ++..++ .-.+| +++ .++ ..++.... .. ..
T Consensus 264 ~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~---~~~LT~~~-------~~~~~ 332 (353)
T PF00930_consen 264 LYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE---PKCLTCED-------GDHYS 332 (353)
T ss_dssp EEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE---EEESSTTS-------STTEE
T ss_pred EEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC---eEeccCCC-------CCceE
Confidence 554 344 4566656666755 67788877654 555432 34444 454 322 12222221 22 48
Q ss_pred EEEcCCCcEEEE
Q 001295 950 VQFHQDQIHFLV 961 (1106)
Q Consensus 950 ~~~s~dg~~l~~ 961 (1106)
+.|||+|++++.
T Consensus 333 ~~~Spdg~y~v~ 344 (353)
T PF00930_consen 333 ASFSPDGKYYVD 344 (353)
T ss_dssp EEE-TTSSEEEE
T ss_pred EEECCCCCEEEE
Confidence 999999999987
No 340
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.00 E-value=0.0023 Score=70.69 Aligned_cols=268 Identities=14% Similarity=0.202 Sum_probs=139.7
Q ss_pred CcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeE-E-----e------------eeeeeccCcCCc------cccccc
Q 001295 352 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLV-L-----R------------NFKVWDLGACSM------PLQAAL 407 (1106)
Q Consensus 352 ~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~-~-----~------------~~~~~d~~~~~~------~~~~~~ 407 (1106)
.|+++.|+++..- ||+|...|.|.||.+...+... . . .-++.|+..... -++...
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 5899999999775 8899999999999986654332 0 0 112223322111 123334
Q ss_pred cCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeecc------ccCCeeEEEEc-----CCC-CceEEE
Q 001295 408 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDA------HVGGVNDIAFS-----HPN-KQLCVI 475 (1106)
Q Consensus 408 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~------h~~~V~~~~~s-----~d~-~~~~l~ 475 (1106)
+....++|++++.| |=.++|.|+.+|.+.|.|+++...+... .+.. ....|+++.|+ .|+ ..+.++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 56668999999998 5559999999999999999887665431 2222 33468888886 222 124788
Q ss_pred EecCCCcEEEEeCC--C-CceeE----EEeccCCCeEEEeccccCC-------------------ceEEEEEecCCeEEE
Q 001295 476 TCGDDKTIKVWDAT--N-GAKQY----IFEGHEAPVYSVCPHHKEN-------------------IQFIFSTALDGKIKA 529 (1106)
Q Consensus 476 s~~~d~~i~iwd~~--~-~~~~~----~~~~h~~~v~~~~~~~~~~-------------------~~~l~s~~~dg~i~i 529 (1106)
.|...|.+.+|.+. . +.... ....+.++|..+......+ -+-++....+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 88899999999765 1 21111 1224556666665221111 012444455778899
Q ss_pred EeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCC
Q 001295 530 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 609 (1106)
Q Consensus 530 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 609 (1106)
+...+.+...+..........+.+-+-.. ...+..|++-..+|.|++|.+..-+.+..+.....
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~----------------~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~ 303 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTIS----------------RNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPP 303 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-----------------EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS-
T ss_pred EeCCCCcccceeeccccccceEEEEeecc----------------cCCceEEEEEECCCcEEEEECCCchHhhcccCCCc
Confidence 88776554443321111222222211000 11223577888999999999999988888765321
Q ss_pred --CCCcCeEEEccCCCEEEEEeCCCcEEEEEc
Q 001295 610 --LPASPRIRFNKDGCLLAVSTNDNGIKILAT 639 (1106)
Q Consensus 610 --~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 639 (1106)
...+...+++++|..++-.+. ..+.++.+
T Consensus 304 ~d~~~~~~ssis~~Gdi~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 304 LDSRRLSSSSISRNGDIFYWTGP-SEIQLFSV 334 (395)
T ss_dssp --HHHHTT-EE-TTS-EEEE-SS-SEEEEEEE
T ss_pred cccccccccEECCCCCEEEEeCc-ccEEEEEE
Confidence 123556788889987766544 34444443
No 341
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.00099 Score=75.89 Aligned_cols=202 Identities=13% Similarity=0.170 Sum_probs=135.2
Q ss_pred EEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCC-eeEEEEecCCCceEEEeeCCCc-----EEEEEeecc----
Q 001295 816 FALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPA-ATFLAFHPQDNNIIAIGMDDSS-----IQIYNVRVD---- 884 (1106)
Q Consensus 816 l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~-v~~l~~s~~d~~~la~g~~dg~-----v~iwd~~~~---- 884 (1106)
-++++.+..++.|+ +|.|.+.+-. .+.++.+..+... |+.+.... +..+|++-++|+. |+||++..-
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 35678888999998 8998888743 3445777777777 44444433 4468887777664 899998642
Q ss_pred --eEE--EEecC-----cccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCC
Q 001295 885 --EVK--SKLKG-----HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 955 (1106)
Q Consensus 885 --~~~--~~l~~-----h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d 955 (1106)
.++ ..+.. ...++.+++.|.+-+.+|.|-.||.|..+.-+--+....+..-...+ ..+|+.+++..|
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~----~~pITgL~~~~d 182 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG----KEPITGLALRSD 182 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccC----CCCceeeEEecC
Confidence 233 12222 34578899999999999999999999988543322222222222222 258999999999
Q ss_pred CcE-EEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEee
Q 001295 956 QIH-FLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1025 (1106)
Q Consensus 956 g~~-l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~ 1025 (1106)
++. +.++....|.+|.+.... ......+.|+.++.|-.|++...-+++++ +..|.+|+.+.......+
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAF 251 (933)
T ss_pred CceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeee
Confidence 988 445778889999998444 33333457788999999987555355553 567999998754443333
No 342
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=97.98 E-value=6.1e-06 Score=63.53 Aligned_cols=53 Identities=30% Similarity=0.510 Sum_probs=42.7
Q ss_pred cHHHHHHHHhcCCHHHHHHHhcccccccCccccchhhhHHHHHHHHHHHhCCCH
Q 001295 37 NMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDR 90 (1106)
Q Consensus 37 ~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~ 90 (1106)
++..++++|+.|+|+.|+..+.......... ...+.|.|++|+|+||++.++.
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~-~~~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLER-NSKLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhcc-CCCchhHHHHHHHHHHHHcCCc
Confidence 3678999999999999999998885332222 2349999999999999998764
No 343
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.98 E-value=0.001 Score=74.27 Aligned_cols=281 Identities=13% Similarity=0.106 Sum_probs=157.3
Q ss_pred cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295 742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 821 (1106)
Q Consensus 742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 821 (1106)
+...|.--+++..+++++.|++-|.+++|+-..+ ........ +....+..++++++
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~----------------------~~~~~~~~--~~~~~~~~~~vs~~ 87 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTG----------------------EMRKLKNE--GATGITCVRSVSSV 87 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCch----------------------hhhccccc--CccceEEEEEecch
Confidence 4455666678889999999999999999875432 22221111 13445667788888
Q ss_pred CCEEEEEe-CCeEEEEEcCCCceeee------ecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecce----EEEEe
Q 001295 822 DSYVMSAS-GGKISLFNMMTFKTMAT------FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE----VKSKL 890 (1106)
Q Consensus 822 ~~~l~~~s-dg~i~vwd~~~~~~~~~------~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~----~~~~l 890 (1106)
..++|.|+ .|.|.++-+........ -..|...|++++|++ +++.+.+|...|.|..-.+.+.. ....+
T Consensus 88 e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~i 166 (726)
T KOG3621|consen 88 EYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEI 166 (726)
T ss_pred hHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhcccccee
Confidence 88888888 68899988775322111 123678899999999 99999999999999998887721 11222
Q ss_pred cCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCC-CCceEEEcCC----CcEEEEEeCC
Q 001295 891 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQ-SDTRVQFHQD----QIHFLVVHET 965 (1106)
Q Consensus 891 ~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~d----g~~l~~~~d~ 965 (1106)
-.-.+.|..+... ++.+|++...- -.+.+++..+. .++- ..+..+ .-...+|-|. ..-.+++..-
T Consensus 167 l~~ds~IVQlD~~-q~~LLVStl~r--~~Lc~tE~eti-----~QIG--~k~R~~~~~~GACF~~g~~~~q~~~IycaRP 236 (726)
T KOG3621|consen 167 LSEDSEIVQLDYL-QSYLLVSTLTR--CILCQTEAETI-----TQIG--KKPRKSLIDFGACFFPGQCKAQKPQIYCARP 236 (726)
T ss_pred eccCcceEEeecc-cceehHhhhhh--hheeecchhHH-----HHhc--CCCcCCccccceEEeeccccCCCceEEEecC
Confidence 2344566666665 34445544332 23444443221 1110 000001 1233444443 3344445555
Q ss_pred eEEEEecCC-ceEeeecccC---------------------------CCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcC
Q 001295 966 QLAIFETTK-LECVKQWVPR---------------------------ESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1017 (1106)
Q Consensus 966 ~v~i~d~~~-~~~~~~~~~~---------------------------~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~ 1017 (1106)
..|+|.++- |..+++...+ .|.-....+.+-.++ .+++-++-| |+|+|..
T Consensus 237 G~RlWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~-~vLa~te~G-iyv~d~~ 314 (726)
T KOG3621|consen 237 GLRLWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSD-RVLAWTEVG-IYVFDSN 314 (726)
T ss_pred CCceEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecc-eEEEeecce-EEEEEec
Confidence 567776543 3333221110 000111112222233 333333334 8999988
Q ss_pred CceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295 1018 NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus 1018 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
+...+.-.+ + ...|. .++- +++-|+.-..||.+++..+.+.+
T Consensus 315 ~~~v~l~se-------~--~~DI~--dVs~---~~neiFvL~~d~~l~~~sv~s~q 356 (726)
T KOG3621|consen 315 NSQVYLWSE-------G--GHDIL--DVSH---CGNEIFVLNLDRGLKVESVASRQ 356 (726)
T ss_pred cceEEEeec-------C--CCcee--EEee---cCceEEEEecCCceeEEEeehhH
Confidence 877765543 1 11122 2332 36666667778888888776655
No 344
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.97 E-value=0.0015 Score=73.13 Aligned_cols=223 Identities=10% Similarity=0.105 Sum_probs=116.6
Q ss_pred cceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCC
Q 001295 744 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 823 (1106)
Q Consensus 744 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~ 823 (1106)
.....+.++|+|+.+++ +.+|...|+..... +. ...+.....+|.+.++
T Consensus 33 ~~p~~ls~npngr~v~V-~g~geY~iyt~~~~----------------------r~--------k~~G~g~~~vw~~~n~ 81 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLV-CGDGEYEIYTALAW----------------------RN--------KAFGSGLSFVWSSRNR 81 (443)
T ss_dssp S--SEEEE-TTSSEEEE-EETTEEEEEETTTT----------------------EE--------EEEEE-SEEEE-TSSE
T ss_pred cCCeeEEECCCCCEEEE-EcCCEEEEEEccCC----------------------cc--------cccCceeEEEEecCcc
Confidence 34688999999997777 67777777752210 00 0223446688888666
Q ss_pred EEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEe
Q 001295 824 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS 903 (1106)
Q Consensus 824 ~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s 903 (1106)
+.+.-.+++|.|+.--+.+....+... ..+..+-. |.+|...+.+ .|.+||..+++.++++... +|..|.|+
T Consensus 82 yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~----G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws 153 (443)
T PF04053_consen 82 YAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG----GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWS 153 (443)
T ss_dssp EEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-
T ss_pred EEEEECCCeEEEEEcCccccceEEcCC-cccceEEc----CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEE
Confidence 555444788999733233332333321 12333332 6677776644 8999999999999998744 38999999
Q ss_pred cCCCEEEEEcCCCcEEEEeCCCccc------ccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceE
Q 001295 904 HALNVLVSSGADSQLCVWSSDGWEK------QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC 977 (1106)
Q Consensus 904 ~d~~~l~s~s~Dg~i~vwd~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~ 977 (1106)
++|.+++-.+.+ ++.|++.+.... .....+...... ...|.+.+|..| - ++......++. +-.|+.
T Consensus 154 ~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~d-~-fiYtT~~~lkY--l~~Ge~ 225 (443)
T PF04053_consen 154 DDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEI---SERIKSGCWVED-C-FIYTTSNHLKY--LVNGET 225 (443)
T ss_dssp TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT-E-EEEE-TTEEEE--EETTEE
T ss_pred CCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEe---cceeEEEEEEcC-E-EEEEcCCeEEE--EEcCCc
Confidence 999999999876 478877554200 000001111110 136788899887 3 33333336666 333332
Q ss_pred --eeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001295 978 --VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus 978 --~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
+..+ ..++.=+.+.+....|.....|+.|..+.++.
T Consensus 226 ~~i~~l-----d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 226 GIIAHL-----DKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EEEEE------SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred ceEEEc-----CCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 3332 45677778888777888888888888887654
No 345
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.96 E-value=1.1e-05 Score=53.94 Aligned_cols=32 Identities=38% Similarity=0.527 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHhHhcHHHHHHHHHHhhCCC
Q 001295 4 LSRELVFLILQFLDEEKFKETVHKLEQESGFF 35 (1106)
Q Consensus 4 ~~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~ 35 (1106)
.++++.++|+|||...||.+|+++|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999974
No 346
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.95 E-value=0.0039 Score=72.33 Aligned_cols=245 Identities=10% Similarity=0.060 Sum_probs=137.8
Q ss_pred CEEEEEe-CCeEEEEEcCCCceeeeecCCCCC-----e-eEEEEecCCCceEEEee---------CCCcEEEEEeecceE
Q 001295 823 SYVMSAS-GGKISLFNMMTFKTMATFMPPPPA-----A-TFLAFHPQDNNIIAIGM---------DDSSIQIYNVRVDEV 886 (1106)
Q Consensus 823 ~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~-----v-~~l~~s~~d~~~la~g~---------~dg~v~iwd~~~~~~ 886 (1106)
..++.++ ++.|.-+|.++++.+..+...... + ....+. ++ ++++++ .+|.|+-+|..+|+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KK-LVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CC-EEEEeccccccccCCCCcEEEEEECCCCce
Confidence 4555555 899999999999988776543321 1 122232 23 444554 367899999999988
Q ss_pred EEEecCccc--------------------Ce-eEEEEecCCCEEEEEcCCC------------------cEEEEeCCCcc
Q 001295 887 KSKLKGHSK--------------------RI-TGLAFSHALNVLVSSGADS------------------QLCVWSSDGWE 927 (1106)
Q Consensus 887 ~~~l~~h~~--------------------~V-~~l~~s~d~~~l~s~s~Dg------------------~i~vwd~~~~~ 927 (1106)
+-++..... .| .+.++.+.+..++.++.|+ .|.-.|.++++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 766543211 11 1234455567777777665 68888998887
Q ss_pred cccceeecccCCCC-CCCCCCceEEE-cCCCc---EEEE-EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCE
Q 001295 928 KQKNRFLQIPTGRT-PTAQSDTRVQF-HQDQI---HFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL 1001 (1106)
Q Consensus 928 ~~~~~~~~~~~~~~-~~~~~i~~~~~-s~dg~---~l~~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~ 1001 (1106)
..-........... .......-... .-+|. .+++ +.+|.+...|.++|+.+-..... ...++.+| ..
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-----~~~~~~~~--~~ 340 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-----EQPMAYDP--GL 340 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-----ccccccCC--ce
Confidence 64322111110000 00000000000 12343 3444 47899999999999987654321 11233444 23
Q ss_pred EEEE------------------EcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCc
Q 001295 1002 VYAC------------------FLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGG 1063 (1106)
Q Consensus 1002 l~t~------------------s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~ 1063 (1106)
++.+ ..+|.|.-.|..+|+.+-+..................-.+.. .+..|++++.||.
T Consensus 341 vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~ 417 (488)
T cd00216 341 VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGY 417 (488)
T ss_pred EEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCCCe
Confidence 3332 236788888999998887665321100000000010001111 3578889999999
Q ss_pred EEEEeecCCCCccCCCC
Q 001295 1064 VHVFEPLESEGKWGVPP 1080 (1106)
Q Consensus 1064 v~vW~~~~~~~~~~~~~ 1080 (1106)
|+.+|..+|+..|...-
T Consensus 418 l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 418 FRAFDATTGKELWKFRT 434 (488)
T ss_pred EEEEECCCCceeeEEEC
Confidence 99999999998888643
No 347
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.94 E-value=0.0028 Score=66.22 Aligned_cols=244 Identities=14% Similarity=0.155 Sum_probs=142.0
Q ss_pred eeEEEEecCCCEEEEEe----C-------CeEEEEEcCCCceeeeecCCCC-------CeeEEEEecCCCceEEEee--C
Q 001295 813 VPCFALSKNDSYVMSAS----G-------GKISLFNMMTFKTMATFMPPPP-------AATFLAFHPQDNNIIAIGM--D 872 (1106)
Q Consensus 813 v~~l~~s~~~~~l~~~s----d-------g~i~vwd~~~~~~~~~~~~~~~-------~v~~l~~s~~d~~~la~g~--~ 872 (1106)
.-.+..+||++.+.+++ . .-|.+||..+......+.-... ....+++|. |++++.+.. -
T Consensus 38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~-dgk~~~V~N~TP 116 (342)
T PF06433_consen 38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSA-DGKFLYVQNFTP 116 (342)
T ss_dssp SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-T-TSSEEEEEEESS
T ss_pred CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEcc-CCcEEEEEccCC
Confidence 34577899999888763 1 2399999999877765432221 223467777 777766543 3
Q ss_pred CCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEE
Q 001295 873 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 952 (1106)
Q Consensus 873 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 952 (1106)
-.+|.|.|+..++.+.++.-.. ...+--+. .+-+.+.+.||++.-..++...+...+....+..... .....-++
T Consensus 117 a~SVtVVDl~~~kvv~ei~~PG--C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~d--p~f~~~~~ 191 (342)
T PF06433_consen 117 ATSVTVVDLAAKKVVGEIDTPG--CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDD--PLFEHPAY 191 (342)
T ss_dssp SEEEEEEETTTTEEEEEEEGTS--EEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS---B-S--EE
T ss_pred CCeEEEEECCCCceeeeecCCC--EEEEEecC-CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCc--ccccccce
Confidence 3578888888888877765321 11121122 2457788899999999888433322222222222111 12233444
Q ss_pred cC-CCcEEEEEeCCeEEEEecCCceEe--eecccC------CC--CCCeeEEEECCCCCEEEEEEcC---C-------eE
Q 001295 953 HQ-DQIHFLVVHETQLAIFETTKLECV--KQWVPR------ES--SAPITHATFSCDSQLVYACFLD---A-------TV 1011 (1106)
Q Consensus 953 s~-dg~~l~~~~d~~v~i~d~~~~~~~--~~~~~~------~h--~~~v~~l~~s~d~~~l~t~s~D---g-------~i 1011 (1106)
+. +++++.++.+|.|+--|+...... ..|..- .+ .+...-+++.+....|++-... + .|
T Consensus 192 ~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteV 271 (342)
T PF06433_consen 192 SRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEV 271 (342)
T ss_dssp ETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEE
T ss_pred ECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEE
Confidence 44 456666788888888887655421 222110 00 1233456777766665544322 1 48
Q ss_pred EEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEE-eCCCcEEEEeecCCC
Q 001295 1012 CVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG-LSDGGVHVFEPLESE 1073 (1106)
Q Consensus 1012 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~-~~Dg~v~vW~~~~~~ 1073 (1106)
.++|+.+++.+.++. +.+. +. +|..+.++.-+|++. ..++.|.+||..+|+
T Consensus 272 Wv~D~~t~krv~Ri~----l~~~-----~~--Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 272 WVYDLKTHKRVARIP----LEHP-----ID--SIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp EEEETTTTEEEEEEE----EEEE-----ES--EEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred EEEECCCCeEEEEEe----CCCc-----cc--eEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 889999999999987 3322 33 677777665577655 458999999999998
No 348
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.92 E-value=0.00048 Score=75.72 Aligned_cols=114 Identities=18% Similarity=0.186 Sum_probs=81.3
Q ss_pred CCCeeEEEEecC-CCEEEEE----e-CCe----EEEEEcCCCceeee---ecCCCCCeeEEEEecCCCceEEEeeCCCcE
Q 001295 810 EEAVPCFALSKN-DSYVMSA----S-GGK----ISLFNMMTFKTMAT---FMPPPPAATFLAFHPQDNNIIAIGMDDSSI 876 (1106)
Q Consensus 810 ~~~v~~l~~s~~-~~~l~~~----s-dg~----i~vwd~~~~~~~~~---~~~~~~~v~~l~~s~~d~~~la~g~~dg~v 876 (1106)
.....++.||-. ...+.+. + +|. -.+|+....+..+. --.....|.+++++| +...|+.|+.||+|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI 283 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence 344467777753 3333333 2 343 45677765443221 123567899999999 88999999999999
Q ss_pred EEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCc
Q 001295 877 QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 926 (1106)
Q Consensus 877 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~ 926 (1106)
.+||...+.. .+..+.-..+.++|+|+|..+++|+.-|.+.+||+.-.
T Consensus 284 iLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 284 ILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 9999876632 23334556789999999999999999999999998753
No 349
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.85 E-value=0.05 Score=63.39 Aligned_cols=77 Identities=12% Similarity=0.125 Sum_probs=47.6
Q ss_pred CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeE-EEEecCCCEE
Q 001295 831 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG-LAFSHALNVL 909 (1106)
Q Consensus 831 g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~-l~~s~d~~~l 909 (1106)
|.|.-+|+.+++..-............ +.- .+.+++.++.||.++.+|..+|+.+-+.+-.....-+ +.|.-+|+..
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t-~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~qY 518 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGV-LAT-AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQY 518 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcc-eEE-CCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEEE
Confidence 458888888888776654322212222 112 3457777888999999999999998877654322111 3344455543
No 350
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.84 E-value=0.0052 Score=65.61 Aligned_cols=175 Identities=14% Similarity=0.177 Sum_probs=87.8
Q ss_pred CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeC---CC-cEEEEEeec-ceEEEEecCccc--CeeEEEEe
Q 001295 831 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DS-SIQIYNVRV-DEVKSKLKGHSK--RITGLAFS 903 (1106)
Q Consensus 831 g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~---dg-~v~iwd~~~-~~~~~~l~~h~~--~V~~l~~s 903 (1106)
..|.-.|+.+|+....+. ....+..+.|||.|..+|+.+-+ +. .-|||-+.+ +.....+..|.. .+..=-|+
T Consensus 168 ~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~ 246 (386)
T PF14583_consen 168 CRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWV 246 (386)
T ss_dssp EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-
T ss_pred ceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccccccc
Confidence 445566777776544444 45567889999977777777543 22 236777664 444455544432 23444589
Q ss_pred cCCCEEEEEc-----CCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCC------------
Q 001295 904 HALNVLVSSG-----ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHET------------ 965 (1106)
Q Consensus 904 ~d~~~l~s~s-----~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~------------ 965 (1106)
|||..|.--+ .+..|.-+|+.+++... +.... .-..+-.++||++++. +.|.
T Consensus 247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~--~~~~p--------~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~ 316 (386)
T PF14583_consen 247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR--LMEMP--------WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKI 316 (386)
T ss_dssp TTSS-EEEEEEETTT--EEEEEE-TTT--EEE--EEEE---------SEEEEEE-TTSSEEEEEE---------------
T ss_pred CCCCEEEEEeecCCCCceEEEeeCCCCCCceE--EEeCC--------ceeeeEEcCCCCEEEecCCCCCcccccccccee
Confidence 9998776532 34567777888765321 22221 1235666789999987 5442
Q ss_pred ----eEEEEecCCceEeeecc------cCCCCCCe--eEEEECCCCCEEE-EEEcCCeEEEEEc
Q 001295 966 ----QLAIFETTKLECVKQWV------PRESSAPI--THATFSCDSQLVY-ACFLDATVCVFSA 1016 (1106)
Q Consensus 966 ----~v~i~d~~~~~~~~~~~------~~~h~~~v--~~l~~s~d~~~l~-t~s~Dg~i~vwd~ 1016 (1106)
-|+++++..++...... ...|...+ -...|||||++++ +....|...||-+
T Consensus 317 ~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 317 ENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp ----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred cCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 46678887766542211 11111112 3578999999965 4556677666644
No 351
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.83 E-value=0.0029 Score=64.59 Aligned_cols=217 Identities=11% Similarity=0.106 Sum_probs=116.0
Q ss_pred eecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCc-ccCeeEEEEecCCCEEEEEcCCCcEEEEeCC
Q 001295 846 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH-SKRITGLAFSHALNVLVSSGADSQLCVWSSD 924 (1106)
Q Consensus 846 ~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~ 924 (1106)
.+.+-...+..++|.|++++++|+....+.|..++. +|+.++++.-. .+-.-+|++..++.++++.-.++.+.+.++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 455556679999999966788999999999988886 47877766432 3457889998888888877779999999984
Q ss_pred Ccccc--cceeecccCCC-CCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCC---ceEeee-----cc-cCCCCCCee
Q 001295 925 GWEKQ--KNRFLQIPTGR-TPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK---LECVKQ-----WV-PRESSAPIT 991 (1106)
Q Consensus 925 ~~~~~--~~~~~~~~~~~-~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~---~~~~~~-----~~-~~~h~~~v~ 991 (1106)
..... ........-+. ...+.....++|++.++.|.++ ...-..+|.+.. ...+.. +. .......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 42211 11111111111 1223468999999987766665 444455665543 111110 11 112355688
Q ss_pred EEEECCCC-CEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEE
Q 001295 992 HATFSCDS-QLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1067 (1106)
Q Consensus 992 ~l~~s~d~-~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW 1067 (1106)
++++.|.. .+++.......|..+| .+|+.+..+....... +-....-.|-.|+|.+ +|++.++ ++-+..+++
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~-gl~~~~~QpEGIa~d~-~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFH-GLSKDIPQPEGIAFDP-DGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGG-G-SS---SEEEEEE-T-T--EEEE-ETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCccc-CcccccCCccEEEECC-CCCEEEE-cCCceEEEe
Confidence 99998854 5566677788899999 7788777666222110 1001123456899998 6755554 454444443
No 352
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.82 E-value=0.0096 Score=66.93 Aligned_cols=198 Identities=15% Similarity=0.162 Sum_probs=106.7
Q ss_pred EEEecCCCEEEEEeCC------------eEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec
Q 001295 816 FALSKNDSYVMSASGG------------KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 883 (1106)
Q Consensus 816 l~~s~~~~~l~~~sdg------------~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~ 883 (1106)
++.+|.|-.+|...|. .|+||+... +.+..+.-..+.+.++.|+. +.. |++-..||.+++||+..
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG-~ll~~i~w~~~~iv~~~wt~-~e~-LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG-KLLSSIPWDSGRIVGMGWTD-DEE-LVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC-CEeEEEEECCCCEEEEEECC-CCe-EEEEEcCCEEEEEeCCC
Confidence 4555555555555433 589998764 55555544448899999987 554 44566899999999863
Q ss_pred ce------EEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccc-cceee-cccCCCC--CCCCCCc-eEEE
Q 001295 884 DE------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ-KNRFL-QIPTGRT--PTAQSDT-RVQF 952 (1106)
Q Consensus 884 ~~------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~-~~~~~-~~~~~~~--~~~~~i~-~~~~ 952 (1106)
.. .+....-....+....+..+|-.+. ..++.+.+- .+.... ..+.+ ..+.... ....... ...+
T Consensus 111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l 186 (410)
T PF04841_consen 111 EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL 186 (410)
T ss_pred ceeechhhhccccCcccccccccccCCCCEEEE--CCCCeEEEE--eCccccchhhccccCCCcccccccccccccceEe
Confidence 22 1111111223333334444553333 334433332 322211 00011 1111000 0000111 1234
Q ss_pred cCCCcEEEE-EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295 953 HQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus 953 s~dg~~l~~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
+.+....+. ..++.+.+.+....+. + ...+++..|++||+|++||.-..+|.+.|...+-.+..+.+.
T Consensus 187 ~~~~~~~i~~~~g~~i~~i~~~~~~~---i---~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 187 SSDRVVEILLANGETIYIIDENSFKQ---I---DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred ecCcceEEEEecCCEEEEEEcccccc---c---cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 445444444 4555566444332211 1 124689999999999999999999999999877777776666
No 353
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.80 E-value=0.00025 Score=77.91 Aligned_cols=129 Identities=11% Similarity=0.097 Sum_probs=90.5
Q ss_pred cceeeeccCCCCcEEEEEecCCCeEEEEEec----cCc----EEEEecCCcceeEEeeeeeeccCcCCccccccccCCCC
Q 001295 341 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTN----VGD----IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 412 (1106)
Q Consensus 341 ~~~~~~~~h~~~v~~~~~sp~g~~llatg~~----dg~----i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~ 412 (1106)
.++...........++.||-...+.+.|-.. +|. -.+|++..++.. ...+ +--...
T Consensus 196 lEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klq-rvsv---------------tsipL~ 259 (545)
T PF11768_consen 196 LEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQ-RVSV---------------TSIPLP 259 (545)
T ss_pred EEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCcee-EEEE---------------EEEecC
Confidence 3444445555667888999865554544322 343 446666544322 1111 123456
Q ss_pred cCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCc
Q 001295 413 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA 492 (1106)
Q Consensus 413 ~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 492 (1106)
..|.|++++|+.+.|+.|+.||+|++||...+... +..+.-..+.++|+|+|. ++++|+..|.+.+||+.-.-
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCceEEEEEeecCc
Confidence 68999999999999999999999999999876322 223455689999999999 89999999999999986443
No 354
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.79 E-value=0.016 Score=59.18 Aligned_cols=187 Identities=9% Similarity=0.091 Sum_probs=103.5
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 428 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 428 (1106)
-.+++..++|+|+...|+|+....+.|...+.+ |+.+.+.. +.+ -+..-.|++..++.+++
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl 80 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVL 80 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE------------------SS--SSEEEEEE-STTEEEE
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-----------------CCC-CCCceeEEEECCCEEEE
Confidence 445799999999988889988888999888864 77765432 233 24678889988887777
Q ss_pred EEeCCCeEEEEEccCCce---eeeee--ee--c-cccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC---CceeEEE
Q 001295 429 VAYSRHIVQIYSYHGGDE---VRQHL--EI--D-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---GAKQYIF 497 (1106)
Q Consensus 429 s~~~d~~v~iwd~~~~~~---~~~~~--~l--~-~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~ 497 (1106)
+--.++.+.++++..... ..... .+ . .+...+-.++|.+.++. |+.+-+..-..|+.+.. +..+...
T Consensus 81 ~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~ 158 (248)
T PF06977_consen 81 SEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVS 158 (248)
T ss_dssp EETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred EEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeec
Confidence 666689999999843221 11111 11 1 35567999999999885 44445555555555443 2222211
Q ss_pred --------eccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCC---------CeeEEEEEecCCC
Q 001295 498 --------EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG---------RWCTTMAYSADGT 558 (1106)
Q Consensus 498 --------~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~ 558 (1106)
......+.++.+++. .+++++....+..|..+| ..++.+..+.... .....|+|.++|+
T Consensus 159 ~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~ 234 (248)
T PF06977_consen 159 DDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN 234 (248)
T ss_dssp E-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--
T ss_pred cccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC
Confidence 123345778888765 457888888899999998 4444443333322 2345566666654
No 355
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.78 E-value=0.0034 Score=70.29 Aligned_cols=216 Identities=16% Similarity=0.157 Sum_probs=118.2
Q ss_pred CCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEE
Q 001295 810 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 889 (1106)
Q Consensus 810 ~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~ 889 (1106)
...+..+.++|+|++++++++|...|+.....+... .+.-...+|++ +++ +|+-..+++|.|+.--+.+....
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA-----FGSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE-----EEE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc-----cCceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence 344788999999999999999999999854433322 23456788988 565 55566688999974333333223
Q ss_pred ecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEE
Q 001295 890 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI 969 (1106)
Q Consensus 890 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i 969 (1106)
++.. ..+..+-. |.+|...+.+ .|.+||+.+++.. ..... ..|..+.|+++|.+++...+..+.|
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i-----~~i~v-----~~vk~V~Ws~~g~~val~t~~~i~i 169 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLI-----RRIDV-----SAVKYVIWSDDGELVALVTKDSIYI 169 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EE-----EEESS------E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHccee-----eEEec-----CCCcEEEEECCCCEEEEEeCCeEEE
Confidence 3322 12333322 8888777665 7999999986542 22221 1478999999999999987888888
Q ss_pred EecCCc--------------eEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCcee--EEeeCCCcccCC
Q 001295 970 FETTKL--------------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL--RCRINPSAYLPA 1033 (1106)
Q Consensus 970 ~d~~~~--------------~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~--~~~~~~~~~~~~ 1033 (1106)
++.+.. ..+..+ ...|.+.+|..| .++..+.. .|+- +-.|+. ++.+.
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~E~-----~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld------- 232 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIHEI-----SERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLD------- 232 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEEEE------S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-S-------
T ss_pred EEecchhcccccccCchhceEEEEEe-----cceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcC-------
Confidence 776544 222221 568999999766 44444444 6665 334433 33332
Q ss_pred CCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecC
Q 001295 1034 GVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus 1034 ~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
..++ -+.+.+ ..+.+.....|+.|..+.++-
T Consensus 233 ----~~~y--llgy~~-~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 233 ----KPLY--LLGYLP-KENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp ----S--E--EEEEET-TTTEEEEE-TT--EEEEE--H
T ss_pred ----CceE--EEEEEc-cCCEEEEEECCCCEEEEEECH
Confidence 1245 455666 357888888999998887654
No 356
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.72 E-value=1.2e-05 Score=87.64 Aligned_cols=204 Identities=15% Similarity=0.242 Sum_probs=127.7
Q ss_pred CCCCcEEEEEecCCC-eEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc-CCCE
Q 001295 349 QGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSL 426 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~-~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 426 (1106)
....+.|++++-+.+ -+++.|..+|.|.+-.+....-- ...+..+|....++++|++ |...
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~ 117 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNH 117 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHH
Confidence 456677888776544 58999999999999887643221 1123578888999999999 7788
Q ss_pred EEEEe----CCCeEEEEEccCC--ceeeeeeeecc-ccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC-ceeEEEe
Q 001295 427 FGVAY----SRHIVQIYSYHGG--DEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFE 498 (1106)
Q Consensus 427 las~~----~d~~v~iwd~~~~--~~~~~~~~l~~-h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~ 498 (1106)
||.|- .|..+.|||+.++ .+.... .+.+ -.....+++|..+.+ ++.+|...+.+.++|++.. .....+
T Consensus 118 LAagldkhrnds~~~Iwdi~s~ltvPke~~-~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv- 193 (783)
T KOG1008|consen 118 LAAGLDKHRNDSSLKIWDINSLLTVPKESP-LFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV- 193 (783)
T ss_pred HHhhhhhhcccCCccceecccccCCCcccc-ccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh-
Confidence 88873 4567999999986 221111 1222 345667899998887 7899999999999998732 222222
Q ss_pred ccCCCeEEEeccccCCceEEEEEecCCeEEEEe-CCCCCceeEeeCC-----CCeeEEEEEecCCCeEEEeeeccceeEE
Q 001295 499 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL-YDNLGSRVDYEAP-----GRWCTTMAYSADGTRTYQGFRKRSLGVV 572 (1106)
Q Consensus 499 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd-~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~~~~~~~~~~i~~~ 572 (1106)
.+..+..+.+.|- .+.++++-. ||.|-+|| .++.+.......+ ...+..++|.|...
T Consensus 194 -nTk~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt-------------- 256 (783)
T KOG1008|consen 194 -NTKYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT-------------- 256 (783)
T ss_pred -hhhhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc--------------
Confidence 2233444454442 224666555 99999999 4443332211111 11355555555432
Q ss_pred EEcCCCCEEEEE-ECCCeEEEEECC
Q 001295 573 QFDTTKNRFLAA-GDDFSIKFWDMD 596 (1106)
Q Consensus 573 ~~~~~~~~l~~~-~~d~~i~iwd~~ 596 (1106)
| .+++. -..++|+++++.
T Consensus 257 -----g-lla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 257 -----G-LLAVLSRDSITIRLYDIC 275 (783)
T ss_pred -----c-hhhhhccCcceEEEeccc
Confidence 1 23333 356788998874
No 357
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.70 E-value=0.022 Score=61.02 Aligned_cols=287 Identities=14% Similarity=0.094 Sum_probs=135.2
Q ss_pred EEEEcCCCceEEEeec-CceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEE
Q 001295 748 RLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM 826 (1106)
Q Consensus 748 ~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~ 826 (1106)
.=+|.++|+.|+.+++ +|.-.+|-+ |+.++...+. ... .........++++.+.++
T Consensus 40 ~~~ft~dG~kllF~s~~dg~~nly~l--------------------DL~t~~i~QL--Tdg-~g~~~~g~~~s~~~~~~~ 96 (386)
T PF14583_consen 40 QNCFTDDGRKLLFASDFDGNRNLYLL--------------------DLATGEITQL--TDG-PGDNTFGGFLSPDDRALY 96 (386)
T ss_dssp S--B-TTS-EEEEEE-TTSS-EEEEE--------------------ETTT-EEEE-----S-S-B-TTT-EE-TTSSEEE
T ss_pred CCCcCCCCCEEEEEeccCCCcceEEE--------------------EcccCEEEEC--ccC-CCCCccceEEecCCCeEE
Confidence 3467889987777666 555444433 3334443332 110 111122456778888877
Q ss_pred EEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEec-CCCceEEEee---C-------------------CCcEEEEEee
Q 001295 827 SAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP-QDNNIIAIGM---D-------------------DSSIQIYNVR 882 (1106)
Q Consensus 827 ~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~-~d~~~la~g~---~-------------------dg~v~iwd~~ 882 (1106)
... +..|+-.|+++.+....+.....-+-...|.. .|+..++-.- . ...|...|+.
T Consensus 97 Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~ 176 (386)
T PF14583_consen 97 YVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK 176 (386)
T ss_dssp EEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred EEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Confidence 655 57899999998876655655555554455542 2455443221 1 1235555667
Q ss_pred cceEEEEecCcccCeeEEEEecCCCEEEEEc----CCCc-EEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCc
Q 001295 883 VDEVKSKLKGHSKRITGLAFSHALNVLVSSG----ADSQ-LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI 957 (1106)
Q Consensus 883 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s----~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~ 957 (1106)
+|+....+. -..-+..+.|||....++.=+ .|.. -|||-+.+.......+..... ...+..=-|.|||.
T Consensus 177 tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-----~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 177 TGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-----GESVGHEFWVPDGS 250 (386)
T ss_dssp T--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-----TEEEEEEEE-TTSS
T ss_pred CCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-----CcccccccccCCCC
Confidence 776544443 344567789999765555433 3332 367765543222211111111 12445668999999
Q ss_pred EEEE-Ee-----CCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCC----------------eEEEEE
Q 001295 958 HFLV-VH-----ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----------------TVCVFS 1015 (1106)
Q Consensus 958 ~l~~-~~-----d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg----------------~i~vwd 1015 (1106)
.|.. +. +..|.-+|..+++...... ..+-..+..++||++++-=+.|. -|++++
T Consensus 251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~----~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~ 326 (386)
T PF14583_consen 251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLME----MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFD 326 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-TTT--EEEEEE----E-SEEEEEE-TTSSEEEEEE-------------------EEEEEE
T ss_pred EEEEEeecCCCCceEEEeeCCCCCCceEEEe----CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEec
Confidence 8876 32 3357788998886644322 22455677789999887544432 577788
Q ss_pred cCCceeEEeeCC-Cccc-CCCCCCCCccceEEEEeCCCCCE-EEEEeCCCcEEEEeec
Q 001295 1016 AANLKLRCRINP-SAYL-PAGVSSSNVHPLVIAAHPQEPNE-FALGLSDGGVHVFEPL 1070 (1106)
Q Consensus 1016 ~~~~~~~~~~~~-~~~~-~~~~~~~~v~~~~~~~~~~d~~~-l~t~~~Dg~v~vW~~~ 1070 (1106)
+..++......- ..+. -.++ .. +.--...|+|+ ++. |.++...|...|+-++
T Consensus 327 ~~~~~~~~l~~h~~sw~v~~~~-~q-~~hPhp~FSPD-gk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 327 VEAGRFRKLARHDTSWKVLDGD-RQ-VTHPHPSFSPD-GKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp TTTTEEEEEEE-------BTTB-SS-TT----EE-TT-SSEEEEEE-TTSS-EEEEEE
T ss_pred cccCceeeeeeccCcceeecCC-Cc-cCCCCCccCCC-CCEEEEECCCCCCccEEEEe
Confidence 887765422210 0011 1111 11 11125899994 555 5677778877776554
No 358
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.012 Score=65.65 Aligned_cols=207 Identities=13% Similarity=0.128 Sum_probs=145.0
Q ss_pred CeeEEEEecCCCEEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeC---CCcEEEEEeecceE
Q 001295 812 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DSSIQIYNVRVDEV 886 (1106)
Q Consensus 812 ~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~---dg~v~iwd~~~~~~ 886 (1106)
....+++++.+..+.... ++.|.+.|..+.+......... ....+++++ +++.+.++.. ++++.+.|..+++.
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeE
Confidence 345688888888665554 6899999988777666654222 678899999 5655544443 68999999998888
Q ss_pred EEEecCcccCeeEEEEecCCCEEEEEc-CCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE--e
Q 001295 887 KSKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--H 963 (1106)
Q Consensus 887 ~~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~ 963 (1106)
+.....-..+ ..++++|+|..+..+. .++.|.+.|..+..... ...............+.++|+|.++.+. .
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~----~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR----GSVGSLVGVGTGPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec----cccccccccCCCCceEEECCCCCEEEEEecc
Confidence 8775443344 8899999999665554 78899999977643221 0000001111355889999999977773 2
Q ss_pred C--CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC-CeEEEEEcCCceeEEeeC
Q 001295 964 E--TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-ATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus 964 d--~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D-g~i~vwd~~~~~~~~~~~ 1026 (1106)
+ +.+...|..++.....-...+-. ....+.++|+|+++.+.... +.+.+-|..+......+.
T Consensus 228 ~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 228 SGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred CCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 2 58999999988877652221222 56778999999998877444 889999999988877655
No 359
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.63 E-value=0.0011 Score=73.89 Aligned_cols=185 Identities=13% Similarity=0.109 Sum_probs=117.0
Q ss_pred CCCeeEEEEecCCCEEEEEe---CC--eEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCc--EEEEEee
Q 001295 810 EEAVPCFALSKNDSYVMSAS---GG--KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS--IQIYNVR 882 (1106)
Q Consensus 810 ~~~v~~l~~s~~~~~l~~~s---dg--~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~--v~iwd~~ 882 (1106)
...+..-+|+|+++.++..+ .+ .+.++++.+++...... ..+.-..-+|||++.+++++...||. |+++|+.
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~ 270 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD 270 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence 45566678999999877664 23 49999999877655544 33445567899954555566667774 5566766
Q ss_pred cceEEEEecCcccCeeEEEEecCCCEEEEEcC-CCc--EEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEE
Q 001295 883 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQ--LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 959 (1106)
Q Consensus 883 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l 959 (1106)
++. +..+..-.+.-+.=.|+|||++|+-.+. .|. |.+.+.+.... . .+. ..+. .-..-.+||||+++
T Consensus 271 ~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--~-riT-~~~~-----~~~~p~~SpdG~~i 340 (425)
T COG0823 271 GKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--T-RLT-FSGG-----GNSNPVWSPDGDKI 340 (425)
T ss_pred CCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce--e-Eee-ccCC-----CCcCccCCCCCCEE
Confidence 665 3345544444446789999999887654 444 55556665433 1 111 1111 11377899999999
Q ss_pred EEEe--CCe--EEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC
Q 001295 960 LVVH--ETQ--LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1008 (1106)
Q Consensus 960 ~~~~--d~~--v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D 1008 (1106)
+... ++. |.++|+.++..++.+. +........|.++|+.+...+.-
T Consensus 341 ~~~~~~~g~~~i~~~~~~~~~~~~~lt---~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 341 VFESSSGGQWDIDKNDLASGGKIRILT---STYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEEeccCCceeeEEeccCCCCcEEEcc---ccccCCCCCcCCCCceEEEeccC
Confidence 9843 454 7777777666444432 23444566788888887765533
No 360
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.61 E-value=0.15 Score=59.60 Aligned_cols=149 Identities=12% Similarity=0.079 Sum_probs=87.4
Q ss_pred cEEEEEeecceEEEEecCcccCeeE---------EEEecCCC---EEEEEcCCCcEEEEeCCCcccccceee--------
Q 001295 875 SIQIYNVRVDEVKSKLKGHSKRITG---------LAFSHALN---VLVSSGADSQLCVWSSDGWEKQKNRFL-------- 934 (1106)
Q Consensus 875 ~v~iwd~~~~~~~~~l~~h~~~V~~---------l~~s~d~~---~l~s~s~Dg~i~vwd~~~~~~~~~~~~-------- 934 (1106)
+|.-.|+++|+..-.++.....+.. +....+|+ .++.+..+|.+.+.|-.+++.......
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~ 351 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT 351 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence 5666788899888766542221211 22224666 788999999999999999876311000
Q ss_pred --cccCCCCC---------------------CCCC--CceEEEcCCCcEEEE-EeC------------------------
Q 001295 935 --QIPTGRTP---------------------TAQS--DTRVQFHQDQIHFLV-VHE------------------------ 964 (1106)
Q Consensus 935 --~~~~~~~~---------------------~~~~--i~~~~~s~dg~~l~~-~~d------------------------ 964 (1106)
....+... ..+. =..++++|+..++.+ ..+
T Consensus 352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (527)
T TIGR03075 352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT 431 (527)
T ss_pred ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence 00000000 0000 012567776665554 111
Q ss_pred ---------CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295 965 ---------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus 965 ---------~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
+.|.-+|+.+++.+-...... ....+. +.-.+.+++.++.||.++.+|..||+.+-+..
T Consensus 432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~--p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~ 499 (527)
T TIGR03075 432 IKPPPDDHMGSLIAWDPITGKIVWEHKEDF--PLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFK 499 (527)
T ss_pred cCCCCCCCceeEEEEeCCCCceeeEecCCC--CCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence 357788888887765543211 111111 12255577778889999999999999998877
No 361
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.56 E-value=0.0037 Score=69.81 Aligned_cols=161 Identities=16% Similarity=0.152 Sum_probs=95.4
Q ss_pred CCCCcEEEEEecCCCeEEEEEecc---CcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCC
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNV---GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 425 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~d---g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 425 (1106)
....+..-+|+|+++.+....-.. ..+.++|+++++.....+ +.+ .-..-+|||||+
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-----------------~~g---~~~~P~fspDG~ 250 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-----------------FNG---NNGAPAFSPDGS 250 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-----------------cCC---ccCCccCCCCCC
Confidence 567788889999999754443333 349999999887654321 122 344568999999
Q ss_pred EEEEEe-CCCe--EEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCc--EEEEeCCCCceeEEEecc
Q 001295 426 LFGVAY-SRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDATNGAKQYIFEGH 500 (1106)
Q Consensus 426 ~las~~-~d~~--v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~h 500 (1106)
+||.+. .||. |.+.|+.++...+ +..-.+.-..=.|+|||+. ++.+.+..|. |.+.|.+.+.. ..+...
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~ 324 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGSQV-TRLTFS 324 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCCce-eEeecc
Confidence 998764 4554 6666777766332 3333333346789999997 3445555565 44455554443 333322
Q ss_pred CCCeEEEeccccCCceEEEEEec-CCe--EEEEeCCCCCc
Q 001295 501 EAPVYSVCPHHKENIQFIFSTAL-DGK--IKAWLYDNLGS 537 (1106)
Q Consensus 501 ~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~ 537 (1106)
.+.-..-.| +++|++++..+. +|. |.+.|+.+...
T Consensus 325 ~~~~~~p~~--SpdG~~i~~~~~~~g~~~i~~~~~~~~~~ 362 (425)
T COG0823 325 GGGNSNPVW--SPDGDKIVFESSSGGQWDIDKNDLASGGK 362 (425)
T ss_pred CCCCcCccC--CCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence 222223344 456667776664 344 55555555443
No 362
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.54 E-value=0.18 Score=56.75 Aligned_cols=137 Identities=18% Similarity=0.231 Sum_probs=77.6
Q ss_pred EEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCc-c
Q 001295 817 ALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH-S 894 (1106)
Q Consensus 817 ~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h-~ 894 (1106)
.++.+....+... ++.+.+.+....+. +. ..+++..+++|| ++++||.-..+|.+.|.+..-.+.+..+.-. .
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~ 259 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSK 259 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcC
Confidence 3445555555444 56666555433211 22 346799999999 9999999999999999886655566555443 3
Q ss_pred cCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCC
Q 001295 895 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK 974 (1106)
Q Consensus 895 ~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~ 974 (1106)
.....+.|.-+...++.- ...|.+..... ..+.|.-++..++...-..++|+.-+.
T Consensus 260 ~~p~~~~WCG~dav~l~~--~~~l~lvg~~~----------------------~~~~~~~~~~~~l~~E~DG~riit~~~ 315 (410)
T PF04841_consen 260 SPPKQMAWCGNDAVVLSW--EDELLLVGPDG----------------------DSISFWYDGPVILVSEIDGVRIITSTS 315 (410)
T ss_pred CCCcEEEEECCCcEEEEe--CCEEEEECCCC----------------------CceEEeccCceEEeccCCceEEEeCCc
Confidence 345566665432222221 22233332111 234454455544445444578877666
Q ss_pred ceEeeecc
Q 001295 975 LECVKQWV 982 (1106)
Q Consensus 975 ~~~~~~~~ 982 (1106)
.+.+....
T Consensus 316 ~~~l~~Vp 323 (410)
T PF04841_consen 316 HEFLQRVP 323 (410)
T ss_pred eEEEEECC
Confidence 66655543
No 363
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.50 E-value=0.051 Score=58.18 Aligned_cols=234 Identities=11% Similarity=0.122 Sum_probs=133.4
Q ss_pred CCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEeCCe
Q 001295 753 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK 832 (1106)
Q Consensus 753 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~ 832 (1106)
..++.|+.|+++| +.++++.. ....... .....|..+...++-+.+++-+|+.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~---------------------~~~~~~i-----~~~~~I~ql~vl~~~~~llvLsd~~ 57 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSD---------------------PSKPTRI-----LKLSSITQLSVLPELNLLLVLSDGQ 57 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecC---------------------CccceeE-----eecceEEEEEEecccCEEEEEcCCc
Confidence 4567789998888 77777621 0001110 1344499999999999999999999
Q ss_pred EEEEEcCCCceeeee--------------cCCCCCeeEEE--EecCCCceEEEeeCCCcEEEEEeecc-----eEEEEec
Q 001295 833 ISLFNMMTFKTMATF--------------MPPPPAATFLA--FHPQDNNIIAIGMDDSSIQIYNVRVD-----EVKSKLK 891 (1106)
Q Consensus 833 i~vwd~~~~~~~~~~--------------~~~~~~v~~l~--~s~~d~~~la~g~~dg~v~iwd~~~~-----~~~~~l~ 891 (1106)
+.++++......... ......+...+ -...+..+|+++. ...|.+|..... +..+++.
T Consensus 58 l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~ 136 (275)
T PF00780_consen 58 LYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS 136 (275)
T ss_pred cEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE
Confidence 999998764443311 01122344444 1121345555554 458999888753 3455554
Q ss_pred CcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCC-----CCCCCCCceEEEcCCCcEEEEEeCCe
Q 001295 892 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR-----TPTAQSDTRVQFHQDQIHFLVVHETQ 966 (1106)
Q Consensus 892 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~s~dg~~l~~~~d~~ 966 (1106)
- ...+.+++|. ++.|+.|..++ ..+.|+.++.... ........ .........+.--+++.+|++ .+..
T Consensus 137 l-p~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~-~~~~ 209 (275)
T PF00780_consen 137 L-PDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSE--LLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLC-YDNI 209 (275)
T ss_pred c-CCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceE--EeCccCCcchhhhcccCCCceEEEEeCCceEEEE-ecce
Confidence 3 3678899998 56777777665 7888998754322 11111100 000011222333334555554 3333
Q ss_pred EEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295 967 LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus 967 v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
-.+.|. .|+..+.... .-...+.++++ ...||++.+. +.|.||++.++++++.+.
T Consensus 210 g~fv~~-~G~~~r~~~i-~W~~~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 210 GVFVNK-NGEPSRKSTI-QWSSAPQSVAY--SSPYLIAFSS-NSIEVRSLETGELVQTIP 264 (275)
T ss_pred EEEEcC-CCCcCcccEE-EcCCchhEEEE--ECCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence 333343 3333221000 11345667776 3458776654 569999999999998876
No 364
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.46 E-value=0.11 Score=59.33 Aligned_cols=245 Identities=14% Similarity=0.133 Sum_probs=123.5
Q ss_pred CcEEEEEecCCCeEEEEEeccC----cEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEE
Q 001295 352 SPMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 427 (1106)
Q Consensus 352 ~v~~~~~sp~g~~llatg~~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 427 (1106)
.+...++||||++++++-+..| .|+|.|+++|+.+.. .+ .. ..-..++|.+|++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i-----------------~~--~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GI-----------------EN--PKFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EE-----------------EE--EESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cc-----------------cc--cccceEEEeCCCCEE
Confidence 3446789999998666656655 499999999977653 11 11 112239999999888
Q ss_pred EEEeCC-----------CeEEEEEccCCceeeeeeeeccccCC--eeEEEEcCCCCceEEEEecC-C-CcEEEEeCCCC-
Q 001295 428 GVAYSR-----------HIVQIYSYHGGDEVRQHLEIDAHVGG--VNDIAFSHPNKQLCVITCGD-D-KTIKVWDATNG- 491 (1106)
Q Consensus 428 as~~~d-----------~~v~iwd~~~~~~~~~~~~l~~h~~~--V~~~~~s~d~~~~~l~s~~~-d-~~i~iwd~~~~- 491 (1106)
.....+ ..|..|++.++..-. ...+.+.... ...+..++|++.+++.+.+. + ..+.+-|+..+
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG 263 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence 776533 247888887764321 1234443333 57888999999633323332 2 35778888765
Q ss_pred ---ceeEEEeccCCCe-EEEeccccCCceEEEEEe---cCCeEEEEeCCCCCc---eeEeeCCCCeeEEEEEecCCCeEE
Q 001295 492 ---AKQYIFEGHEAPV-YSVCPHHKENIQFIFSTA---LDGKIKAWLYDNLGS---RVDYEAPGRWCTTMAYSADGTRTY 561 (1106)
Q Consensus 492 ---~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~~~ 561 (1106)
.....+......+ ..+... .+ .+++... ..+.|...++..... ...+..+...
T Consensus 264 ~~~~~~~~l~~~~~~~~~~v~~~--~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~-------------- 326 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGVEYYVDHH--GD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDED-------------- 326 (414)
T ss_dssp TSS-SEEEEEESSSS-EEEEEEE--TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSS--------------
T ss_pred CCcCCcEEEeCCCCceEEEEEcc--CC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCc--------------
Confidence 2333333333333 333321 22 3333332 235566666665442 1111112111
Q ss_pred EeeeccceeEEEEcCCCCEEEEE-EC--CCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEe--C--CCcE
Q 001295 562 QGFRKRSLGVVQFDTTKNRFLAA-GD--DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST--N--DNGI 634 (1106)
Q Consensus 562 ~~~~~~~i~~~~~~~~~~~l~~~-~~--d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~--~--dg~i 634 (1106)
.....+...+++|+.. .. ...|+++++..+.....+.... ...|..+...+++..+.... . -+++
T Consensus 327 -------~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~-~g~v~~~~~~~~~~~~~~~~ss~~~P~~~ 398 (414)
T PF02897_consen 327 -------VSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPE-AGSVSGVSGDFDSDELRFSYSSFTTPPTV 398 (414)
T ss_dssp -------EEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSS-SSEEEEEES-TT-SEEEEEEEETTEEEEE
T ss_pred -------eeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCc-ceEEeccCCCCCCCEEEEEEeCCCCCCEE
Confidence 1111122223344443 23 3468889998344444444332 12344555455555444322 2 3567
Q ss_pred EEEEccCC
Q 001295 635 KILATSDG 642 (1106)
Q Consensus 635 ~iwd~~~~ 642 (1106)
..||+.++
T Consensus 399 y~~d~~t~ 406 (414)
T PF02897_consen 399 YRYDLATG 406 (414)
T ss_dssp EEEETTTT
T ss_pred EEEECCCC
Confidence 77787776
No 365
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.11 Score=58.12 Aligned_cols=241 Identities=15% Similarity=0.158 Sum_probs=155.7
Q ss_pred CeeEEEEecCCCEEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEE
Q 001295 812 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 889 (1106)
Q Consensus 812 ~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~ 889 (1106)
....+.+.+++..+.... ...+...+................-..+++++.+.+..+....++.|.+.|..+.+....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 455678888886555554 234555555421111111111134567788884455777777779999999877766655
Q ss_pred ecCcccCeeEEEEecCCCEEEEEcC---CCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE--eC
Q 001295 890 LKGHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE 964 (1106)
Q Consensus 890 l~~h~~~V~~l~~s~d~~~l~s~s~---Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~d 964 (1106)
..--. .-..++++++++.+..+.. ++++.+.|-.+.+.... ...+. ....++++|+|..+.+. .+
T Consensus 112 ~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~----~~vG~-----~P~~~a~~p~g~~vyv~~~~~ 181 (381)
T COG3391 112 IPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT----IPVGN-----TPTGVAVDPDGNKVYVTNSDD 181 (381)
T ss_pred eeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE----EecCC-----CcceEEECCCCCeEEEEecCC
Confidence 43222 4578999999987776655 67788888777543222 22232 22889999999988874 58
Q ss_pred CeEEEEecCCceEeeeccc---CCCCCCeeEEEECCCCCEEEEEEcC---CeEEEEEcCCceeEEeeCCCcccCCCCCCC
Q 001295 965 TQLAIFETTKLECVKQWVP---RESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRCRINPSAYLPAGVSSS 1038 (1106)
Q Consensus 965 ~~v~i~d~~~~~~~~~~~~---~~h~~~v~~l~~s~d~~~l~t~s~D---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1106)
+.|.+.|..+....+ ... -.-......+.++|||.++...... +.+.+.|..++.....-... ..
T Consensus 182 ~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~--------~~ 252 (381)
T COG3391 182 NTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV--------GS 252 (381)
T ss_pred CeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc--------cc
Confidence 999999987776664 110 0113455788999999987666544 58999999998877652211 11
Q ss_pred CccceEEEEeCCCCCEEEEEe-CCCcEEEEeecCCC
Q 001295 1039 NVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLESE 1073 (1106)
Q Consensus 1039 ~v~~~~~~~~~~d~~~l~t~~-~Dg~v~vW~~~~~~ 1073 (1106)
. .+..+.+.| +|..+.+.. ..+.+.+-|-.+..
T Consensus 253 ~-~~~~v~~~p-~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 253 G-APRGVAVDP-AGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred C-CCCceeECC-CCCEEEEEecCCCeEEEEeCCCCc
Confidence 1 344688889 577776664 44788888877755
No 366
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0013 Score=68.68 Aligned_cols=110 Identities=10% Similarity=0.160 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHhHhcHHHHHHHHHHhhCCCcc----------HHHHHHHHhcCCHHHHHHHhcccc-cccCccccchhhh
Q 001295 6 RELVFLILQFLDEEKFKETVHKLEQESGFFFN----------MKYFEDEVHNGNWDDVEKYLSGFT-KVDDNRYSMKIFF 74 (1106)
Q Consensus 6 ~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~----------~~~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~~ 74 (1106)
+.+..+|..++...|..+.+..|-+|+|...+ +.++-+++.+|+-.-|++.+.... .+.+. ...+.|
T Consensus 117 ~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~--~s~LE~ 194 (394)
T KOG2817|consen 117 QVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK--SSSLEF 194 (394)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc--cccHHH
Confidence 34689999999999999999999999999853 788899999999999998886532 11111 234999
Q ss_pred HHHHHHHHHHHhCCCHH--HHHHHHHhhcccccccCHHHHHHHHH
Q 001295 75 EIRKQKYLEALDKHDRA--KAVEILVKDLKVFSTFNEELFKEITQ 117 (1106)
Q Consensus 75 ~i~~q~~lEll~~~~~~--~A~~~l~~~l~~l~~~~~~~~~~l~~ 117 (1106)
.+..+.|++++..|... +|++..|+.++|+...+..+++.|--
T Consensus 195 ~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~ 239 (394)
T KOG2817|consen 195 KLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMG 239 (394)
T ss_pred HHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHH
Confidence 99999999999999888 99999999999996655444554433
No 367
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.38 E-value=0.033 Score=65.27 Aligned_cols=148 Identities=13% Similarity=0.053 Sum_probs=87.8
Q ss_pred CCCeeEEEEecCCCceEEEee------CCC--cEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCC-CcEEEE
Q 001295 851 PPAATFLAFHPQDNNIIAIGM------DDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD-SQLCVW 921 (1106)
Q Consensus 851 ~~~v~~l~~s~~d~~~la~g~------~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-g~i~vw 921 (1106)
...+...++|| +++.+|... .|+ .|.+++. .+.......+. ..+.-.|+|||+.|++.... ..+++.
T Consensus 349 ~~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 349 MGNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred ccCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEe
Confidence 34678999999 777666554 244 4555554 23322222332 37889999999988877533 222222
Q ss_pred -----------eCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEE---EecCCceEeee-----cc
Q 001295 922 -----------SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI---FETTKLECVKQ-----WV 982 (1106)
Q Consensus 922 -----------d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i---~d~~~~~~~~~-----~~ 982 (1106)
+++.++... .....|..+.|||||+.++...+++|.+ -....|. ... +.
T Consensus 425 ~~~~~gql~~~~vd~ge~~~-----------~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~ 492 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS-----------RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVG 492 (591)
T ss_pred ccCCCceEEEEeccCchhhh-----------ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEee
Confidence 333322110 1124689999999999999966788877 4444443 111 11
Q ss_pred cCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEc
Q 001295 983 PRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1016 (1106)
Q Consensus 983 ~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~ 1016 (1106)
.+-...+.++.|..++.++ ++..++...+|.+
T Consensus 493 -~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 493 -PGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred -cccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 1223346889999999865 4555555555554
No 368
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.29 E-value=0.00014 Score=79.66 Aligned_cols=199 Identities=13% Similarity=0.174 Sum_probs=131.5
Q ss_pred CCCeeEEEEecCC--CEEEEEe-CCeEEEEEcCCCcee--eeecCCCCCeeEEEEecCCCceEEEee----CCCcEEEEE
Q 001295 810 EEAVPCFALSKND--SYVMSAS-GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGM----DDSSIQIYN 880 (1106)
Q Consensus 810 ~~~v~~l~~s~~~--~~l~~~s-dg~i~vwd~~~~~~~--~~~~~~~~~v~~l~~s~~d~~~la~g~----~dg~v~iwd 880 (1106)
...+.|++..-+. -.+++|. +|.|.+-........ ....++....++++|++-|..+||.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 3445666655443 3667776 799888877643322 334566778999999998888999874 456899999
Q ss_pred eecc--eE--EEEecC-cccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcC-
Q 001295 881 VRVD--EV--KSKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ- 954 (1106)
Q Consensus 881 ~~~~--~~--~~~l~~-h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~- 954 (1106)
+.++ -+ -..|.+ -.....+++|-.|.+++.+|...+.+.++|++...... ..+.+ ..+..+..+|
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~-~svnT--------k~vqG~tVdp~ 206 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV-SSVNT--------KYVQGITVDPF 206 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhh-hhhhh--------hhcccceecCC
Confidence 9876 11 122222 33456689999999999999999999999987321111 11111 2457788899
Q ss_pred CCcEEEEEeCCeEEEEe-cCCceE-eeecccC--CCCCCeeEEEECCCCC-EEEEEEcC-CeEEEEEcC
Q 001295 955 DQIHFLVVHETQLAIFE-TTKLEC-VKQWVPR--ESSAPITHATFSCDSQ-LVYACFLD-ATVCVFSAA 1017 (1106)
Q Consensus 955 dg~~l~~~~d~~v~i~d-~~~~~~-~~~~~~~--~h~~~v~~l~~s~d~~-~l~t~s~D-g~i~vwd~~ 1017 (1106)
.+.|++...|+.|.+|| ..+-+- +..+... .-...+..++|+|... .|++.+.| ++|+.+|+.
T Consensus 207 ~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 207 SPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 88999998899999999 333222 2222110 0123489999999554 45555555 689999874
No 369
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.27 E-value=0.008 Score=71.03 Aligned_cols=150 Identities=12% Similarity=0.120 Sum_probs=97.1
Q ss_pred CCceEEEEecCCCcEEEEeCCCCceeEEEeccCCC-eEEEecccc---CCceEEEEEecCCeEEEEeCCCCCceeE-eeC
Q 001295 469 NKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP-VYSVCPHHK---ENIQFIFSTALDGKIKAWLYDNLGSRVD-YEA 543 (1106)
Q Consensus 469 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~ 543 (1106)
.+.++|........|+-.|++.|+.+..+..|... |..++-... -+....+.|-.++.+..||.+-.+.... -..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 34434555566788999999999999999988755 777652211 0124567788899999999986432111 000
Q ss_pred CCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCC
Q 001295 544 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC 623 (1106)
Q Consensus 544 ~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 623 (1106)
+. ......+.|++-+.+| +||+|+.+|.||+||-...+....+.+-+ .+|..|..+.||+
T Consensus 572 k~-----------------Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG--~pI~~iDvt~DGk 631 (794)
T PF08553_consen 572 KQ-----------------YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLG--DPIIGIDVTADGK 631 (794)
T ss_pred cc-----------------cccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCC--CCeeEEEecCCCc
Confidence 00 0111234444444443 49999999999999954333333344333 4799999999999
Q ss_pred EEEEEeCCCcEEEEEc
Q 001295 624 LLAVSTNDNGIKILAT 639 (1106)
Q Consensus 624 ~l~~~~~dg~i~iwd~ 639 (1106)
++++.+. ..+.+++.
T Consensus 632 wilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 632 WILATCK-TYLLLIDT 646 (794)
T ss_pred EEEEeec-ceEEEEEE
Confidence 9887665 57777775
No 370
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.26 E-value=0.013 Score=68.48 Aligned_cols=188 Identities=12% Similarity=0.059 Sum_probs=104.3
Q ss_pred CCeeEEEEecCCCEEEEEe-------CC--eEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCC--------
Q 001295 811 EAVPCFALSKNDSYVMSAS-------GG--KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD-------- 873 (1106)
Q Consensus 811 ~~v~~l~~s~~~~~l~~~s-------dg--~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~d-------- 873 (1106)
..+...+++|||+.++... |. .|.+++... .. ..+.. ....+.-.|+| ++..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence 3578899999999887654 32 466666532 22 22221 22478899999 77766665422
Q ss_pred ----CcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEE---EeCCCcccccceeecccCCCCCCCCC
Q 001295 874 ----SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCV---WSSDGWEKQKNRFLQIPTGRTPTAQS 946 (1106)
Q Consensus 874 ----g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~v---wd~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1106)
+.+++.++..++... ...+.|..+.|||||..|+... ++.|.+ -....++...........+.. ..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence 233333444433322 2345799999999999988766 467776 343344311111111211111 23
Q ss_pred CceEEEcCCCcEEEEEeCC--eEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEE
Q 001295 947 DTRVQFHQDQIHFLVVHET--QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1012 (1106)
Q Consensus 947 i~~~~~s~dg~~l~~~~d~--~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~ 1012 (1106)
+..+.|..++.+++...++ .+...++..... ..+.......++.+|+=+++ .|+.+..+|.+.
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~-~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNS-DALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecCCccc-cccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 5789999999976554333 344444442222 12222223567777777653 344455565433
No 371
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0016 Score=71.68 Aligned_cols=94 Identities=18% Similarity=0.434 Sum_probs=73.0
Q ss_pred CCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeE-EEEEccCCCEEE
Q 001295 350 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN-RVIWSPDGSLFG 428 (1106)
Q Consensus 350 ~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~-~l~~spdg~~la 428 (1106)
.-.|..+.|+|.-. |+|++..+|.|.+..+. .+++ |+ +.-|...++ +++|.|||+.||
T Consensus 20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRl-------wt------------ip~p~~~v~~sL~W~~DGklla 78 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRL-------WT------------IPIPGENVTASLCWRPDGKLLA 78 (665)
T ss_pred ccceEEEEEcCccc-hhheeccCCcEEEEEec-ccee-------Ee------------ccCCCCccceeeeecCCCCEEE
Confidence 35788999999988 79999999999998877 4443 33 344555666 999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEc
Q 001295 429 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS 466 (1106)
Q Consensus 429 s~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s 466 (1106)
+|-.||+|++.|+.++..+... ...-...|.++-|.
T Consensus 79 Vg~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 79 VGFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWD 114 (665)
T ss_pred EEecCCeEEEEEccCCCceecc--ccccccchheeecc
Confidence 9999999999999998766532 22234567777775
No 372
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.16 E-value=0.13 Score=54.88 Aligned_cols=220 Identities=13% Similarity=0.089 Sum_probs=125.9
Q ss_pred EEEecCCCEEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEec--
Q 001295 816 FALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-- 891 (1106)
Q Consensus 816 l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~-- 891 (1106)
..|.++...|+... .+.|.-|+..+++. ..+... +.+.++..-. .+..|+++ +.-+++++..++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p-~~~~~~~~~d-~~g~Lv~~--~~g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSP-GGFSSGALID-AGGRLIAC--EHGVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECC-CCcccceeec-CCCeEEEE--ccccEEEeccCCceeEEeccc
Confidence 34666777666655 68899999876543 333322 2334444333 33344433 2346777776555432221
Q ss_pred --C-cccCeeEEEEecCCCEEEEEcC-----C----CcEEEEeCCC-cccccceeecccCCCCCCCCCCceEEEcCCCcE
Q 001295 892 --G-HSKRITGLAFSHALNVLVSSGA-----D----SQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 958 (1106)
Q Consensus 892 --~-h~~~V~~l~~s~d~~~l~s~s~-----D----g~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~ 958 (1106)
+ -...-+.+...|+|.+.++... . ..-.+|.+.. +. ......++. .....++||||++.
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~-----~~~l~~~~~---~~~NGla~SpDg~t 176 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG-----VVRLLDDDL---TIPNGLAFSPDGKT 176 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC-----EEEeecCcE---EecCceEECCCCCE
Confidence 1 1245667888999988876544 1 1124555552 21 122222211 13478999999988
Q ss_pred EEEE--eCCeEEEEecCC--ceE---eeecccCCCCCCeeEEEECCCCCEEEEEEcCC-eEEEEEcCCceeEEeeCCCcc
Q 001295 959 FLVV--HETQLAIFETTK--LEC---VKQWVPRESSAPITHATFSCDSQLVYACFLDA-TVCVFSAANLKLRCRINPSAY 1030 (1106)
Q Consensus 959 l~~~--~d~~v~i~d~~~--~~~---~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg-~i~vwd~~~~~~~~~~~~~~~ 1030 (1106)
|..+ ..+.|.-|++.. +.. ........+.+..-.++...+|.+-+++-.+| .|.+|+.+ |+++..+.
T Consensus 177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~---- 251 (307)
T COG3386 177 LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK---- 251 (307)
T ss_pred EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE----
Confidence 8775 457788877652 211 11112222356667788888888875554454 89999988 99998887
Q ss_pred cCCCCCCCCccceEEEEeCCCCCEEEEEe
Q 001295 1031 LPAGVSSSNVHPLVIAAHPQEPNEFALGL 1059 (1106)
Q Consensus 1031 ~~~~~~~~~v~~~~~~~~~~d~~~l~t~~ 1059 (1106)
+|. ..+..++|-..+.+.|.+.+
T Consensus 252 lP~------~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 252 LPV------KRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CCC------CCCccceEeCCCcCEEEEEe
Confidence 442 12236788754556554443
No 373
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.13 E-value=0.057 Score=53.97 Aligned_cols=102 Identities=16% Similarity=0.281 Sum_probs=69.6
Q ss_pred CCcEEEEEecCCCeEEEEEeccCc-EEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEE
Q 001295 351 SSPMSMDFHPVQQTLLLVGTNVGD-IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 429 (1106)
Q Consensus 351 ~~v~~~~~sp~g~~llatg~~dg~-i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 429 (1106)
..-..++|+|.-.+-++.+-.-|+ ..++|..+........- ....-+-+|. .|||||++|..
T Consensus 68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s-----------~~~RHfyGHG------vfs~dG~~LYA 130 (366)
T COG3490 68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVS-----------QEGRHFYGHG------VFSPDGRLLYA 130 (366)
T ss_pred cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEec-----------ccCceeeccc------ccCCCCcEEEe
Confidence 344567888877655666655554 67888887766543110 0111245664 59999999987
Q ss_pred EeCC-----CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCc
Q 001295 430 AYSR-----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 471 (1106)
Q Consensus 430 ~~~d-----~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~ 471 (1106)
.-.| |.|-|||...+ .....++..|.-.-..+.|.+||+.
T Consensus 131 TEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrt 175 (366)
T COG3490 131 TENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRT 175 (366)
T ss_pred ecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcE
Confidence 6433 78999999843 4555678888888899999999995
No 374
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.12 E-value=0.15 Score=54.33 Aligned_cols=232 Identities=13% Similarity=0.074 Sum_probs=131.7
Q ss_pred EEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCCCe
Q 001295 356 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 435 (1106)
Q Consensus 356 ~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 435 (1106)
-.|.+++..|+.+.-..+.|.-||..+++... +.. .+.+.++..-.++..|+++. .|
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~~~-p~~~~~~~~~d~~g~Lv~~~-~g- 86 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------FPS-PGGFSSGALIDAGGRLIACE-HG- 86 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------EEC-CCCcccceeecCCCeEEEEc-cc-
Confidence 34677777778777778999999998775432 111 22334444444455555542 33
Q ss_pred EEEEEccCCceeeeeeeec-cc-cCCeeEEEEcCCCCceEEEEecC------C---CcEEEEeCC-CCceeEEEeccCCC
Q 001295 436 VQIYSYHGGDEVRQHLEID-AH-VGGVNDIAFSHPNKQLCVITCGD------D---KTIKVWDAT-NGAKQYIFEGHEAP 503 (1106)
Q Consensus 436 v~iwd~~~~~~~~~~~~l~-~h-~~~V~~~~~s~d~~~~~l~s~~~------d---~~i~iwd~~-~~~~~~~~~~h~~~ 503 (1106)
+.+++.+++..+..+.... +. ...-+.+...|+|. +.++... + ..-.||-+. .+..++.+..+-..
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~ 164 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTI 164 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEe
Confidence 6777876665433222221 21 24567889999998 3443322 0 112455444 56777777766677
Q ss_pred eEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEE
Q 001295 504 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 583 (1106)
Q Consensus 504 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 583 (1106)
-+.++|++++. .+.++=+..+.|.-|++...... .... ...+.+ ....+..-.++...+|++.++
T Consensus 165 ~NGla~SpDg~-tly~aDT~~~~i~r~~~d~~~g~----~~~~-~~~~~~---------~~~~G~PDG~~vDadG~lw~~ 229 (307)
T COG3386 165 PNGLAFSPDGK-TLYVADTPANRIHRYDLDPATGP----IGGR-RGFVDF---------DEEPGLPDGMAVDADGNLWVA 229 (307)
T ss_pred cCceEECCCCC-EEEEEeCCCCeEEEEecCcccCc----cCCc-ceEEEc---------cCCCCCCCceEEeCCCCEEEe
Confidence 78899877653 34444455688888877631100 0000 001111 011112233566666776655
Q ss_pred EECC-CeEEEEECCCcceeEEEccCCCCCCcCeEEEcc-CCCEEEEEeC
Q 001295 584 AGDD-FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN 630 (1106)
Q Consensus 584 ~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~ 630 (1106)
+..+ +.|.+|+.+ |+++..+.... ..+++++|-- +.+.|.+.+.
T Consensus 230 a~~~g~~v~~~~pd-G~l~~~i~lP~--~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 230 AVWGGGRVVRFNPD-GKLLGEIKLPV--KRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred cccCCceEEEECCC-CcEEEEEECCC--CCCccceEeCCCcCEEEEEec
Confidence 4444 399999998 99998887763 3577888854 4555554443
No 375
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.12 E-value=0.029 Score=66.50 Aligned_cols=146 Identities=10% Similarity=0.114 Sum_probs=97.8
Q ss_pred CCceEEE-eeCCCcEEEEEeecceEEEEecCcccC-eeEEEEecC-------CCEEEEEcCCCcEEEEeCCCccccccee
Q 001295 863 DNNIIAI-GMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHA-------LNVLVSSGADSQLCVWSSDGWEKQKNRF 933 (1106)
Q Consensus 863 d~~~la~-g~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d-------~~~l~s~s~Dg~i~vwd~~~~~~~~~~~ 933 (1106)
+.++|+. ......|+-.|+..|+.+..+..|... |..+ .|+ ....+.|-.+..+..||.+-.. ..+
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~ 566 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKL 566 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCC---Cce
Confidence 4444443 345678999999999999999988754 5544 443 2344556677789999987532 111
Q ss_pred ecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEE
Q 001295 934 LQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV 1013 (1106)
Q Consensus 934 ~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~v 1013 (1106)
...............|++-+.+|...+.+.+|.||+||--..+....+. +-..+|..|..+.||+||++.+ +..+.+
T Consensus 567 v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp--~lG~pI~~iDvt~DGkwilaTc-~tyLlL 643 (794)
T PF08553_consen 567 VDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALP--GLGDPIIGIDVTADGKWILATC-KTYLLL 643 (794)
T ss_pred eeccccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCC--CCCCCeeEEEecCCCcEEEEee-cceEEE
Confidence 1111111122245678888888887777899999999954333222222 5578999999999999988665 667777
Q ss_pred EEc
Q 001295 1014 FSA 1016 (1106)
Q Consensus 1014 wd~ 1016 (1106)
++.
T Consensus 644 i~t 646 (794)
T PF08553_consen 644 IDT 646 (794)
T ss_pred EEE
Confidence 775
No 376
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.09 E-value=0.1 Score=57.59 Aligned_cols=94 Identities=18% Similarity=0.291 Sum_probs=61.8
Q ss_pred EEEEccCCCEEEEEeCCCeEEE---EEccC-C--ce---eeeeeeecccc-CCeeEEEEcCC---C------CceEEEEe
Q 001295 417 RVIWSPDGSLFGVAYSRHIVQI---YSYHG-G--DE---VRQHLEIDAHV-GGVNDIAFSHP---N------KQLCVITC 477 (1106)
Q Consensus 417 ~l~~spdg~~las~~~d~~v~i---wd~~~-~--~~---~~~~~~l~~h~-~~V~~~~~s~d---~------~~~~l~s~ 477 (1106)
.++.+|++++||.+..+..+.+ |+... + +. +.-...+.... ..|+++.+-|= . ....++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4688999999999988877665 64421 1 11 11111122111 46777766442 1 12289999
Q ss_pred cCCCcEEEEeCCCCceeEEEeccCCCeEEEeccc
Q 001295 478 GDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHH 511 (1106)
Q Consensus 478 ~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 511 (1106)
..+|.|++|. ++|..+..-.-|..+|..+....
T Consensus 86 ~ssG~vrfyt-e~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYT-ENGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEe-ccchHHHHHhcCccceEEEEecc
Confidence 9999999999 68888777667899999887543
No 377
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.08 E-value=0.12 Score=56.59 Aligned_cols=223 Identities=13% Similarity=0.073 Sum_probs=119.4
Q ss_pred CcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC----CCEEEEEeC---------C-CeEEE
Q 001295 373 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD----GSLFGVAYS---------R-HIVQI 438 (1106)
Q Consensus 373 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd----g~~las~~~---------d-~~v~i 438 (1106)
+.|++.|..+.+.+....+.- ..+-..+..+.|..+ -.+|++|+. . |.|.+
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~---------------~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v 66 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEP---------------NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILV 66 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEET---------------TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEE
T ss_pred cEEEEEeCCCCeEEEEEECCC---------------CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEE
Confidence 357888888887776544431 111112333344433 467887752 2 88999
Q ss_pred EEccCC----ceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCc-eeEEEe-ccCCCeEEEecccc
Q 001295 439 YSYHGG----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFE-GHEAPVYSVCPHHK 512 (1106)
Q Consensus 439 wd~~~~----~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~h~~~v~~~~~~~~ 512 (1106)
+++... ..++..... ...++|++++-. .+. ++++. .+.|.+|++...+ ....-. .....+.++.. .
T Consensus 67 ~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~-~~~--lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~ 138 (321)
T PF03178_consen 67 FEISESPENNFKLKLIHST-EVKGPVTAICSF-NGR--LVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--F 138 (321)
T ss_dssp EEECSS-----EEEEEEEE-EESS-EEEEEEE-TTE--EEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--E
T ss_pred EEEEcccccceEEEEEEEE-eecCcceEhhhh-CCE--EEEee--cCEEEEEEccCcccchhhheecceEEEEEEec--c
Confidence 999984 233333222 457889999876 343 34444 3789999998877 433222 12335666653 2
Q ss_pred CCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEE
Q 001295 513 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 592 (1106)
Q Consensus 513 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 592 (1106)
. ++++.|.....+.++.++..... ..-++-..... .+.++.+-++++.++++..+|.+.+
T Consensus 139 ~--~~I~vgD~~~sv~~~~~~~~~~~---------l~~va~d~~~~---------~v~~~~~l~d~~~~i~~D~~gnl~~ 198 (321)
T PF03178_consen 139 K--NYILVGDAMKSVSLLRYDEENNK---------LILVARDYQPR---------WVTAAEFLVDEDTIIVGDKDGNLFV 198 (321)
T ss_dssp T--TEEEEEESSSSEEEEEEETTTE----------EEEEEEESS-B---------EEEEEEEE-SSSEEEEEETTSEEEE
T ss_pred c--cEEEEEEcccCEEEEEEEccCCE---------EEEEEecCCCc---------cEEEEEEecCCcEEEEEcCCCeEEE
Confidence 3 48889988888887755542211 11111111111 2333444433346888999999998
Q ss_pred EECCC-------c--ceeEEEccCCCCCCcCeE---EEcc--CC------CEEEEEeCCCcEEEEEc
Q 001295 593 WDMDS-------V--QLLTSIDADGGLPASPRI---RFNK--DG------CLLAVSTNDNGIKILAT 639 (1106)
Q Consensus 593 wd~~~-------~--~~~~~~~~~~~~~~v~~v---~~s~--~~------~~l~~~~~dg~i~iwd~ 639 (1106)
+.... + +.......+-+ ..|+++ ++.| .+ ..++.++.+|.|.+.-.
T Consensus 199 l~~~~~~~~~~~~~~~L~~~~~f~lg-~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p 264 (321)
T PF03178_consen 199 LRYNPEIPNSRDGDPKLERISSFHLG-DIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLIP 264 (321)
T ss_dssp EEE-SS-SSTTTTTTBEEEEEEEE-S-S-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEEE
T ss_pred EEECCCCcccccccccceeEEEEECC-CccceEEEEEeeecCCCCcccccceEEEEecCCEEEEEEe
Confidence 87652 2 22222222221 245555 4444 12 24888889999985533
No 378
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.07 E-value=0.26 Score=49.46 Aligned_cols=209 Identities=13% Similarity=0.053 Sum_probs=121.6
Q ss_pred eeEEEEecCCCE-EEEEe-CCe-EEEEEcCCCceeeeecCCCCC--eeEEEEecCCCceEEEeeCC-----CcEEEEEee
Q 001295 813 VPCFALSKNDSY-VMSAS-GGK-ISLFNMMTFKTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDD-----SSIQIYNVR 882 (1106)
Q Consensus 813 v~~l~~s~~~~~-l~~~s-dg~-i~vwd~~~~~~~~~~~~~~~~--v~~l~~s~~d~~~la~g~~d-----g~v~iwd~~ 882 (1106)
...++++|.-.. ++.+- -|+ ..++|..+.+.+.++....+. --.=.||| ||.+|...-.| |.|-|||..
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecc
Confidence 345777776543 34444 354 678898887766655432221 11236899 88888765333 689999987
Q ss_pred cc-eEEEEecCcccCeeEEEEecCCCEEEEEcCC------------------CcEEEEeCCCcccccceeecccCCCCCC
Q 001295 883 VD-EVKSKLKGHSKRITGLAFSHALNVLVSSGAD------------------SQLCVWSSDGWEKQKNRFLQIPTGRTPT 943 (1106)
Q Consensus 883 ~~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~ 943 (1106)
.+ +.+.++..|.-.-..|.|.+||+.|+.+... -++.+-|..+++...+..+.... .
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l----~ 224 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASL----R 224 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhh----h
Confidence 53 5667888888777889999999999987541 11233333333322222211101 1
Q ss_pred CCCCceEEEcCCCcEEEEE-eCC-----eEEEEecCCceEeeecccC-----CCCCCeeEEEECCCCCEEEEEEcC-CeE
Q 001295 944 AQSDTRVQFHQDQIHFLVV-HET-----QLAIFETTKLECVKQWVPR-----ESSAPITHATFSCDSQLVYACFLD-ATV 1011 (1106)
Q Consensus 944 ~~~i~~~~~s~dg~~l~~~-~d~-----~v~i~d~~~~~~~~~~~~~-----~h~~~v~~l~~s~d~~~l~t~s~D-g~i 1011 (1106)
..+++.++..+||+.++.+ ..| ---+=-...++.+.-+... .-...|-+|+...+..+++..+-. ...
T Consensus 225 ~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~ 304 (366)
T COG3490 225 QLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRA 304 (366)
T ss_pred hcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeE
Confidence 1367788888888877763 211 1111111122222222111 113457788888767776655544 467
Q ss_pred EEEEcCCceeEEeeC
Q 001295 1012 CVFSAANLKLRCRIN 1026 (1106)
Q Consensus 1012 ~vwd~~~~~~~~~~~ 1026 (1106)
.+||..+|+.+....
T Consensus 305 vi~da~tG~vv~~a~ 319 (366)
T COG3490 305 VIWDAATGAVVSEAA 319 (366)
T ss_pred EEEEcCCCcEEeccc
Confidence 889999999886544
No 379
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.04 E-value=0.25 Score=56.55 Aligned_cols=239 Identities=12% Similarity=0.104 Sum_probs=125.1
Q ss_pred eeEEEEecCCCEEEEEe--CC----eEEEEEcCCCceeeee-cCCCCCeeEEEEecCCCceEEEee-CC----------C
Q 001295 813 VPCFALSKNDSYVMSAS--GG----KISLFNMMTFKTMATF-MPPPPAATFLAFHPQDNNIIAIGM-DD----------S 874 (1106)
Q Consensus 813 v~~l~~s~~~~~l~~~s--dg----~i~vwd~~~~~~~~~~-~~~~~~v~~l~~s~~d~~~la~g~-~d----------g 874 (1106)
+....+||||+++|.+- +| .|+++|+.+++.+... .. .....+.|.+ |++.|+... .+ .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECT-TSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeC-CCCEEEEEEeCcccccccCCCCc
Confidence 34678999999999773 33 4999999999776432 21 1123499999 655544443 22 2
Q ss_pred cEEEEEeecceE--EEEecCcccC--eeEEEEecCCCEEEEEcCC----CcEEEEeCCCc--ccccceeecccCCCCCCC
Q 001295 875 SIQIYNVRVDEV--KSKLKGHSKR--ITGLAFSHALNVLVSSGAD----SQLCVWSSDGW--EKQKNRFLQIPTGRTPTA 944 (1106)
Q Consensus 875 ~v~iwd~~~~~~--~~~l~~h~~~--V~~l~~s~d~~~l~s~s~D----g~i~vwd~~~~--~~~~~~~~~~~~~~~~~~ 944 (1106)
.|+.|.+.+... ...+...... ...+..++|+++|+..... ..+.+-++..+ .......+....
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~------ 276 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE------ 276 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS------
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC------
Confidence 377788766432 2334443332 5678899999998754322 34677777764 111222222211
Q ss_pred CCCceEEEcCCCcEEEEE----eCCeEEEEecCCceE---eeecccCCCCC--CeeEEEECCCCCE-EEEEEcCC--eEE
Q 001295 945 QSDTRVQFHQDQIHFLVV----HETQLAIFETTKLEC---VKQWVPRESSA--PITHATFSCDSQL-VYACFLDA--TVC 1012 (1106)
Q Consensus 945 ~~i~~~~~s~dg~~l~~~----~d~~v~i~d~~~~~~---~~~~~~~~h~~--~v~~l~~s~d~~~-l~t~s~Dg--~i~ 1012 (1106)
..+....-...+.+++.+ ..+.|...++.+... ...+. .|.. .+..+.. .+.+ ++....++ .|+
T Consensus 277 ~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~--~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~ 352 (414)
T PF02897_consen 277 DGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI--PEDEDVSLEDVSL--FKDYLVLSYRENGSSRLR 352 (414)
T ss_dssp SS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE----SSSEEEEEEEE--ETTEEEEEEEETTEEEEE
T ss_pred CceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc--CCCCceeEEEEEE--ECCEEEEEEEECCccEEE
Confidence 122333333355454443 346788888877653 22333 3344 3455544 4444 44555555 488
Q ss_pred EEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCC---CcEEEEeecCCC
Q 001295 1013 VFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD---GGVHVFEPLESE 1073 (1106)
Q Consensus 1013 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~D---g~v~vW~~~~~~ 1073 (1106)
++++..+.....+. ++.. +.+. .+...+....+.++.++- ++++.+|+.+++
T Consensus 353 v~~~~~~~~~~~~~----~p~~---g~v~--~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 353 VYDLDDGKESREIP----LPEA---GSVS--GVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEETT-TEEEEEEE----SSSS---SEEE--EEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EEECCCCcEEeeec----CCcc---eEEe--ccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 99998444444443 2221 1122 344444333344443322 367788888877
No 380
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.01 E-value=0.0017 Score=44.44 Aligned_cols=39 Identities=33% Similarity=0.559 Sum_probs=34.9
Q ss_pred ceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEe
Q 001295 884 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922 (1106)
Q Consensus 884 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd 922 (1106)
++++..+..|...|+++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 455677788999999999999999999999999999996
No 381
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.99 E-value=0.011 Score=63.95 Aligned_cols=150 Identities=12% Similarity=0.123 Sum_probs=96.3
Q ss_pred CCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEE-----EEEecCCeEEEEeCCCCCce-eEee
Q 001295 469 NKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI-----FSTALDGKIKAWLYDNLGSR-VDYE 542 (1106)
Q Consensus 469 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-----~s~~~dg~i~iwd~~~~~~~-~~~~ 542 (1106)
...+++.++.....++--|++.|+.+..+.-|.. |+-+.+.++..+..+ +.|-.|..|.-||.+-...- ....
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 3444677888888899999999999999987766 666666565544333 45566888999998843331 1100
Q ss_pred CCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCC
Q 001295 543 APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG 622 (1106)
Q Consensus 543 ~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 622 (1106)
.+-.|+ +...+.|.+-..+| ++++|+.+|.||+||-...+....+.+-+ ..|..|..+.||
T Consensus 423 ------q~kqy~----------~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG--~~I~hVdvtadG 483 (644)
T KOG2395|consen 423 ------QSKQYS----------TKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLG--DAIKHVDVTADG 483 (644)
T ss_pred ------eccccc----------cccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccC--CceeeEEeeccC
Confidence 000000 11123333333333 59999999999999974333334445444 378999999999
Q ss_pred CEEEEEeCCCcEEEEEc
Q 001295 623 CLLAVSTNDNGIKILAT 639 (1106)
Q Consensus 623 ~~l~~~~~dg~i~iwd~ 639 (1106)
++|++.+. ..+.+.++
T Consensus 484 Kwil~Tc~-tyLlLi~t 499 (644)
T KOG2395|consen 484 KWILATCK-TYLLLIDT 499 (644)
T ss_pred cEEEEecc-cEEEEEEE
Confidence 99876664 56666665
No 382
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.89 E-value=0.066 Score=58.66 Aligned_cols=179 Identities=13% Similarity=0.196 Sum_probs=102.4
Q ss_pred CCEEEEEe----------C-CeEEEEEcCCC----ceeeee--cCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecc
Q 001295 822 DSYVMSAS----------G-GKISLFNMMTF----KTMATF--MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 884 (1106)
Q Consensus 822 ~~~l~~~s----------d-g~i~vwd~~~~----~~~~~~--~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~ 884 (1106)
..++++|. . |.|.++++... ..+..+ ....++|++++-- ++++++ +. ++.|++|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~-~~-g~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVV-AV-GNKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEE-EE-TTEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEE-ee-cCEEEEEEccCc
Confidence 46787773 1 77999999874 122211 2246789988876 344443 33 589999999987
Q ss_pred e-EEEEecC-cccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-
Q 001295 885 E-VKSKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV- 961 (1106)
Q Consensus 885 ~-~~~~l~~-h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~- 961 (1106)
+ ....-.- ....++++... +.+++.|+....+.++.++.... .......... ...+.++.|-+|+..+++
T Consensus 118 ~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~---~l~~va~d~~--~~~v~~~~~l~d~~~~i~~ 190 (321)
T PF03178_consen 118 KTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENN---KLILVARDYQ--PRWVTAAEFLVDEDTIIVG 190 (321)
T ss_dssp SSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE----EEEEEEESS---BEEEEEEEE-SSSEEEEE
T ss_pred ccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCC---EEEEEEecCC--CccEEEEEEecCCcEEEEE
Confidence 7 4433221 22245555554 66999999888898886654111 1111111111 135778888866655555
Q ss_pred EeCCeEEEEecCC-----------ceEeeecccCCCCCCeeEE---EECCC--CC------EEEEEEcCCeEEEE
Q 001295 962 VHETQLAIFETTK-----------LECVKQWVPRESSAPITHA---TFSCD--SQ------LVYACFLDATVCVF 1014 (1106)
Q Consensus 962 ~~d~~v~i~d~~~-----------~~~~~~~~~~~h~~~v~~l---~~s~d--~~------~l~t~s~Dg~i~vw 1014 (1106)
-.+|.+.++.... ...+..+. ....|+++ ++.|. +. .++.++.+|.|.+.
T Consensus 191 D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~---lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 191 DKDGNLFVLRYNPEIPNSRDGDPKLERISSFH---LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp ETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE----SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cCCCeEEEEEECCCCcccccccccceeEEEEE---CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 4778999887752 12233332 25678888 65552 22 37788899998844
No 383
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.89 E-value=0.27 Score=52.54 Aligned_cols=222 Identities=13% Similarity=0.141 Sum_probs=124.8
Q ss_pred cCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEE----------
Q 001295 820 KNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK---------- 889 (1106)
Q Consensus 820 ~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~---------- 889 (1106)
..++.|+.|.++.|.+++........... +...|..+...+ +-+.|++-+ |+.++++++........
T Consensus 5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~-~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDGLYVYDLSDPSKPTRIL-KLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCCEEEEEecCCccceeEe-ecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 46778888885449999983322222222 233499999998 555555443 59999999876433321
Q ss_pred ----ecCcccCeeEEE--EecC-CCEEEEEcCCCcEEEEeCCCccccc---ceeecccCCCCCCCCCCceEEEcCCCcEE
Q 001295 890 ----LKGHSKRITGLA--FSHA-LNVLVSSGADSQLCVWSSDGWEKQK---NRFLQIPTGRTPTAQSDTRVQFHQDQIHF 959 (1106)
Q Consensus 890 ----l~~h~~~V~~l~--~s~d-~~~l~s~s~Dg~i~vwd~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~s~dg~~l 959 (1106)
-......+...+ -... ...|+.+ ...+|.+|......... ..-+... ..+..++|. +..+
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp-------~~~~~i~~~--~~~i 151 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLP-------DPPSSIAFL--GNKI 151 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcC-------CCcEEEEEe--CCEE
Confidence 011223344333 1123 3445544 44589998887632211 1112211 367888888 6777
Q ss_pred EEEeCCeEEEEecCCceEeeecccCC----------CCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEE--eeCC
Q 001295 960 LVVHETQLAIFETTKLECVKQWVPRE----------SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC--RINP 1027 (1106)
Q Consensus 960 ~~~~d~~v~i~d~~~~~~~~~~~~~~----------h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~--~~~~ 1027 (1106)
+++..+...+.|+.++.....+.... ...++..+... ++.+|++- |..-.+.|. .|+... .+.
T Consensus 152 ~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~- 226 (275)
T PF00780_consen 152 CVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQ- 226 (275)
T ss_pred EEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEE-
Confidence 77778889999999776654433211 12344444444 45676643 333333343 443332 222
Q ss_pred CcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295 1028 SAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus 1028 ~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
.. ..|..+++.. .+|++.+. +.|.||++.+++
T Consensus 227 ---W~-------~~p~~~~~~~---pyli~~~~-~~iEV~~~~~~~ 258 (275)
T PF00780_consen 227 ---WS-------SAPQSVAYSS---PYLIAFSS-NSIEVRSLETGE 258 (275)
T ss_pred ---cC-------CchhEEEEEC---CEEEEECC-CEEEEEECcCCc
Confidence 11 1244677753 46666664 559999999997
No 384
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0046 Score=68.30 Aligned_cols=94 Identities=10% Similarity=0.130 Sum_probs=76.1
Q ss_pred CCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCee-EEEEecCCCEEEEEcCCCcEEEEeCCCcccc
Q 001295 851 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT-GLAFSHALNVLVSSGADSQLCVWSSDGWEKQ 929 (1106)
Q Consensus 851 ~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~-~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~ 929 (1106)
...+..+.|+| .-.++|++..+|.|-+..+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|++++...
T Consensus 20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 34688899999 88899999999999999988 777888887777777 9999999999999999999999999997654
Q ss_pred cceeecccCCCCCCCCCCceEEEc
Q 001295 930 KNRFLQIPTGRTPTAQSDTRVQFH 953 (1106)
Q Consensus 930 ~~~~~~~~~~~~~~~~~i~~~~~s 953 (1106)
....... ...|.++-|+
T Consensus 98 ~~~~~s~-------e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSV-------ETDISKGIWD 114 (665)
T ss_pred ecccccc-------ccchheeecc
Confidence 4321111 1356667775
No 385
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.032 Score=65.84 Aligned_cols=99 Identities=17% Similarity=0.228 Sum_probs=69.6
Q ss_pred EEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCC
Q 001295 365 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG 444 (1106)
Q Consensus 365 llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~ 444 (1106)
.++.|+..|.|...|+...-.-. .| -..-.++|++++|+.||+.++.|-.+|.|.+||+..+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~-----~~-------------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPL-----HQ-------------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchh-----hc-------------CCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence 48888888999888876531100 00 1223569999999999999999999999999999998
Q ss_pred ceeeeeeeeccccCC---eeEEEEcCCCCceEEEEecCCCcEEEEeC
Q 001295 445 DEVRQHLEIDAHVGG---VNDIAFSHPNKQLCVITCGDDKTIKVWDA 488 (1106)
Q Consensus 445 ~~~~~~~~l~~h~~~---V~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 488 (1106)
+.++.+ ..|..+ |..+.+..++. .++++...|. +|.+
T Consensus 163 k~l~~i---~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 163 KILKVI---TEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWKL 202 (1206)
T ss_pred cceeee---eecCCccceEEEEEEeCCCc--EEEEccCCCc--eEEE
Confidence 877643 334433 44444555555 5788877776 5654
No 386
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.58 E-value=0.48 Score=50.19 Aligned_cols=190 Identities=11% Similarity=0.083 Sum_probs=91.3
Q ss_pred EEEEecCCCEEEEEeCCeEEEEEcC-CCce-eeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecC
Q 001295 815 CFALSKNDSYVMSASGGKISLFNMM-TFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG 892 (1106)
Q Consensus 815 ~l~~s~~~~~l~~~sdg~i~vwd~~-~~~~-~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~ 892 (1106)
.+....++..++++..|. ||... .++. ........+.+..+..++ |+++++++.......-||--...-...-+.
T Consensus 108 ~i~~l~~~~~~l~~~~G~--iy~T~DgG~tW~~~~~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~ 184 (302)
T PF14870_consen 108 GITALGDGSAELAGDRGA--IYRTTDGGKTWQAVVSETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRN 184 (302)
T ss_dssp EEEEEETTEEEEEETT----EEEESSTTSSEEEEE-S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--
T ss_pred EEEEcCCCcEEEEcCCCc--EEEeCCCCCCeeEcccCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccC
Confidence 344434444444444444 33332 2222 222334456788888898 899999886555555676432111122233
Q ss_pred cccCeeEEEEecCCCEEEEEcCCCcEEEEeCC-CcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEe
Q 001295 893 HSKRITGLAFSHALNVLVSSGADSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE 971 (1106)
Q Consensus 893 h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d 971 (1106)
-+.+|.+|.|+||+.+.+.+ ..|.|+.=+.. ..+.-....... ......+..++|.+++...+++..+.+.+ .
T Consensus 185 ~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~----~~~~~~~ld~a~~~~~~~wa~gg~G~l~~-S 258 (302)
T PF14870_consen 185 SSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPI----KTNGYGILDLAYRPPNEIWAVGGSGTLLV-S 258 (302)
T ss_dssp SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TT----SS--S-EEEEEESSSS-EEEEESTT-EEE-E
T ss_pred ccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCc----ccCceeeEEEEecCCCCEEEEeCCccEEE-e
Confidence 56889999999998776644 78888877622 211100000111 01112468899999999999888886543 4
Q ss_pred cCCceEeeecc-cCCCCCCeeEEEECCCCCEEEEEEcCCeEEEE
Q 001295 972 TTKLECVKQWV-PRESSAPITHATFSCDSQLVYACFLDATVCVF 1014 (1106)
Q Consensus 972 ~~~~~~~~~~~-~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vw 1014 (1106)
.+.|+--..-. ...-...++.|.|.++.+-++.| .||.|--|
T Consensus 259 ~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 259 TDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp SSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred CCCCccceECccccCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 44443322211 11224568899998776666655 68877554
No 387
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.56 E-value=0.0058 Score=41.61 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=29.0
Q ss_pred CCCCCeeEEEECCCCCEEEEEEcCCeEEEEE
Q 001295 985 ESSAPITHATFSCDSQLVYACFLDATVCVFS 1015 (1106)
Q Consensus 985 ~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd 1015 (1106)
.|...|.++.|.+++.++++++.|+.+++|+
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 6788999999999999999999999999996
No 388
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.55 E-value=0.89 Score=49.76 Aligned_cols=111 Identities=22% Similarity=0.260 Sum_probs=58.3
Q ss_pred CcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC----CCEE
Q 001295 352 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD----GSLF 427 (1106)
Q Consensus 352 ~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd----g~~l 427 (1106)
..+.|+|.|||+ ++++ ...|.|++++ ..+.... .+. ++ ..+..........++|+|+ +.+.
T Consensus 3 ~P~~~a~~pdG~-l~v~-e~~G~i~~~~-~~g~~~~--~v~--~~--------~~v~~~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 3 NPRSMAFLPDGR-LLVA-ERSGRIWVVD-KDGSLKT--PVA--DL--------PEVFADGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp SEEEEEEETTSC-EEEE-ETTTEEEEEE-TTTEECE--EEE--E---------TTTBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred CceEEEEeCCCc-EEEE-eCCceEEEEe-CCCcCcc--eec--cc--------ccccccccCCcccceeccccCCCCEEE
Confidence 568999999998 4554 6689999999 4444311 110 00 0124455678899999994 4433
Q ss_pred EEEeCC--------CeEEEEEccCC--ce--eeee-eeec---cccCCeeEEEEcCCCCceEEEEec
Q 001295 428 GVAYSR--------HIVQIYSYHGG--DE--VRQH-LEID---AHVGGVNDIAFSHPNKQLCVITCG 478 (1106)
Q Consensus 428 as~~~d--------~~v~iwd~~~~--~~--~~~~-~~l~---~h~~~V~~~~~s~d~~~~~l~s~~ 478 (1106)
++.+.. ..|.-|....+ .. .+.+ ..+. .....-..|+|.|||. +++.+|+
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~ 133 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGD 133 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCC
Confidence 433321 24555555443 11 1111 1111 1234557799999995 3444443
No 389
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.53 E-value=0.78 Score=50.80 Aligned_cols=40 Identities=10% Similarity=-0.130 Sum_probs=33.9
Q ss_pred CCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295 987 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus 987 ~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
...+.+|+.+|++++.|+...=|.|.++|+.++..+..++
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK 346 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK 346 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc
Confidence 4568899999999988887777999999999998877665
No 390
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.43 E-value=0.056 Score=58.79 Aligned_cols=145 Identities=10% Similarity=0.099 Sum_probs=99.3
Q ss_pred ceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCE--E-----EEEcCCCcEEEEeCCCcccccceeeccc
Q 001295 865 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNV--L-----VSSGADSQLCVWSSDGWEKQKNRFLQIP 937 (1106)
Q Consensus 865 ~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~--l-----~s~s~Dg~i~vwd~~~~~~~~~~~~~~~ 937 (1106)
-+|.++..-..++--|+..|+.+.++.-|.+ |+-+.+.|+++. | +.|=.|..|.-||.+-.... .+...
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---kl~~~ 422 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---KLAVV 422 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc---eeeee
Confidence 3455556667888889999999999998877 888889887642 2 23556777888987742221 22222
Q ss_pred CCCCC-CCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEc
Q 001295 938 TGRTP-TAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1016 (1106)
Q Consensus 938 ~~~~~-~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~ 1016 (1106)
.++.- ....-.|.+-..+|..++.+.+|.|++||- .+..-++.. .+-..+|..+..+.||++|++.+ +..+.+-++
T Consensus 423 q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAl-PgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTAL-PGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcc-cccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 22221 113445667777777666689999999998 444434333 25688999999999999988665 666666665
No 391
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.42 E-value=3.6 Score=50.06 Aligned_cols=213 Identities=15% Similarity=0.080 Sum_probs=113.5
Q ss_pred CCEEEEEeCCCeEEEEEccCCceeeeeeeeccccC------CeeEEEEcC----------------CCCceEEEEecCCC
Q 001295 424 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVG------GVNDIAFSH----------------PNKQLCVITCGDDK 481 (1106)
Q Consensus 424 g~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~------~V~~~~~s~----------------d~~~~~l~s~~~d~ 481 (1106)
+..|..++.++.|.-.|..+|+.+-.... ..... ....+++.. .+. .++.++.|+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~-~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~--rV~~~T~Dg 270 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDP-KLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR--RIILPTSDA 270 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcC-CCCcccccccccccceEEecCCcccccccccccccccCC--EEEEecCCC
Confidence 45566667777788888888876543211 11000 011222211 233 477788899
Q ss_pred cEEEEeCCCCceeEEEeccCCCeE-------------EEeccccCCceEEEEEec----------CCeEEEEeCCCCCce
Q 001295 482 TIKVWDATNGAKQYIFEGHEAPVY-------------SVCPHHKENIQFIFSTAL----------DGKIKAWLYDNLGSR 538 (1106)
Q Consensus 482 ~i~iwd~~~~~~~~~~~~h~~~v~-------------~~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~ 538 (1106)
.+.-.|.++|+.+..+.. .+.|. .+.-.|.-.+..++.|+. +|.|+-+|.++++.+
T Consensus 271 ~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 271 RLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred eEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 999999999999877642 22221 000001101235666643 689999999999988
Q ss_pred eEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEE------------------ECCCeEEEEECCCcce
Q 001295 539 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA------------------GDDFSIKFWDMDSVQL 600 (1106)
Q Consensus 539 ~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~------------------~~d~~i~iwd~~~~~~ 600 (1106)
..+.......... ...+. .+.......-...+++++...++.+ ...+.|.-.|+++|+.
T Consensus 350 W~~~~g~p~~~~~--~~~g~-~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~ 426 (764)
T TIGR03074 350 WAWDPGNPDPTAP--PAPGE-TYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKE 426 (764)
T ss_pred eEEecCCCCcccC--CCCCC-EeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCce
Confidence 8765321111100 01111 1111111111223333333332221 1245677888999998
Q ss_pred eEEEccCCCC-------CCcCeEEEcc-CCC---EEEEEeCCCcEEEEEccCCc
Q 001295 601 LTSIDADGGL-------PASPRIRFNK-DGC---LLAVSTNDNGIKILATSDGI 643 (1106)
Q Consensus 601 ~~~~~~~~~~-------~~v~~v~~s~-~~~---~l~~~~~dg~i~iwd~~~~~ 643 (1106)
.-.++...|. ....-+.+.. +|+ .++.++.+|.+.++|.++|+
T Consensus 427 ~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 427 RWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred EEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 8777642221 0011122322 553 78999999999999999993
No 392
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.41 E-value=0.029 Score=66.23 Aligned_cols=101 Identities=16% Similarity=0.295 Sum_probs=76.1
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCce-eeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCee
Q 001295 821 NDSYVMSAS-GGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 898 (1106)
Q Consensus 821 ~~~~l~~~s-dg~i~vwd~~~~~~-~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 898 (1106)
.+-+++.|+ .|.+...|+...-. ...-..-.++|++++|+. +|++++.|-.+|.|.+||+..++.++.+..|..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 455677787 57888888765311 122222356899999999 999999999999999999999999999988877776
Q ss_pred EEEE---ecCCCEEEEEcCCCcEEEEeCC
Q 001295 899 GLAF---SHALNVLVSSGADSQLCVWSSD 924 (1106)
Q Consensus 899 ~l~~---s~d~~~l~s~s~Dg~i~vwd~~ 924 (1106)
++-+ ..++..+.++..-|. +|.+.
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 6554 456667888887775 66654
No 393
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.40 E-value=1.2 Score=48.64 Aligned_cols=243 Identities=13% Similarity=0.119 Sum_probs=119.6
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEcCCCce---eeee----cCCCCCeeEEEEecC---CCceEEEeeCC--------
Q 001295 812 AVPCFALSKNDSYVMSASGGKISLFNMMTFKT---MATF----MPPPPAATFLAFHPQ---DNNIIAIGMDD-------- 873 (1106)
Q Consensus 812 ~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~---~~~~----~~~~~~v~~l~~s~~---d~~~la~g~~d-------- 873 (1106)
..++|+|.|||+++++-..|.|++++ ..+.. +..+ .........++++|+ ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 35789999999988876699999999 33332 2222 223446789999982 24444444321
Q ss_pred CcEEEEEeecc-------e-EEEEecC---cccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCC-
Q 001295 874 SSIQIYNVRVD-------E-VKSKLKG---HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT- 941 (1106)
Q Consensus 874 g~v~iwd~~~~-------~-~~~~l~~---h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~- 941 (1106)
..|.-|....+ + ++..+.. ....-..|+|.|||.+.++.+..+.- -...........++.+.....
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~--~~~~~~~~~~G~ilri~~dG~~ 159 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGND--DNAQDPNSLRGKILRIDPDGSI 159 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTG--GGGCSTTSSTTEEEEEETTSSB
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCc--ccccccccccceEEEecccCcC
Confidence 24444544433 1 1122222 12234569999999888877665430 000000000111111111000
Q ss_pred ------------C------CCCCCceEEEcCC-CcEEEE--EeCCeEEEEecCCceEe----------------------
Q 001295 942 ------------P------TAQSDTRVQFHQD-QIHFLV--VHETQLAIFETTKLECV---------------------- 978 (1106)
Q Consensus 942 ------------~------~~~~i~~~~~s~d-g~~l~~--~~d~~v~i~d~~~~~~~---------------------- 978 (1106)
. .-.....++|.|. |.++++ +.+..=.|.-+..+.-.
T Consensus 160 p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 0 0013357899999 887777 44433233223222110
Q ss_pred -----eecccCCCCCCeeEEEECC-------CCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEE
Q 001295 979 -----KQWVPRESSAPITHATFSC-------DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1046 (1106)
Q Consensus 979 -----~~~~~~~h~~~v~~l~~s~-------d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1046 (1106)
..+.. .+...++.+.|-. +|.++++.-..+.|....++++..+.... ..+ . .....++.++
T Consensus 240 ~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~-~---~~~~r~~~v~ 312 (331)
T PF07995_consen 240 PGFVPPVFAY-PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEE--EFL-G---GFGGRPRDVA 312 (331)
T ss_dssp TTS---SEEE-TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE--EEC-T---TSSS-EEEEE
T ss_pred CCcCccceee-cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceE--Ecc-c---cCCCCceEEE
Confidence 00001 1235566677653 45566666656778888877553332221 111 1 1112456899
Q ss_pred EeCCCCCEEEEEeCCCcEE
Q 001295 1047 AHPQEPNEFALGLSDGGVH 1065 (1106)
Q Consensus 1047 ~~~~d~~~l~t~~~Dg~v~ 1065 (1106)
+.| ||.++++.+.+|.|.
T Consensus 313 ~~p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 313 QGP-DGALYVSDDSDGKIY 330 (331)
T ss_dssp EET-TSEEEEEE-TTTTEE
T ss_pred EcC-CCeEEEEECCCCeEe
Confidence 999 788888888888774
No 394
>PHA02713 hypothetical protein; Provisional
Probab=96.30 E-value=0.38 Score=56.81 Aligned_cols=225 Identities=12% Similarity=0.071 Sum_probs=113.1
Q ss_pred eEEEEEcCCCceee--eecCCCCCeeEEEEecCCCceEEEeeCC------CcEEEEEeecceE--EEEecCcccCeeEEE
Q 001295 832 KISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDD------SSIQIYNVRVDEV--KSKLKGHSKRITGLA 901 (1106)
Q Consensus 832 ~i~vwd~~~~~~~~--~~~~~~~~v~~l~~s~~d~~~la~g~~d------g~v~iwd~~~~~~--~~~l~~h~~~V~~l~ 901 (1106)
.+..||..+.+... .+...... .+++. - ++.++++|+.+ ..+..||..+..- +..+....... ++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~- 347 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-V-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SL- 347 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-E-CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eE-
Confidence 46677777654322 22211111 22333 3 67788888854 3477888776532 22222111111 22
Q ss_pred EecCCCEEEEEcCCC-----cEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eC-----------
Q 001295 902 FSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE----------- 964 (1106)
Q Consensus 902 ~s~d~~~l~s~s~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d----------- 964 (1106)
..-+|+..+.||.++ ++..||..+.+ +..+....... .....+ .-+|+..+.| .+
T Consensus 348 ~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~---W~~~~~mp~~r---~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~ 419 (557)
T PHA02713 348 AVIDDTIYAIGGQNGTNVERTIECYTMGDDK---WKMLPDMPIAL---SSYGMC--VLDQYIYIIGGRTEHIDYTSVHHM 419 (557)
T ss_pred EEECCEEEEECCcCCCCCCceEEEEECCCCe---EEECCCCCccc---ccccEE--EECCEEEEEeCCCccccccccccc
Confidence 233678888888764 37788877632 22221111110 011122 2356666664 22
Q ss_pred ------------CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC------CeEEEEEcCC-ceeEEee
Q 001295 965 ------------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD------ATVCVFSAAN-LKLRCRI 1025 (1106)
Q Consensus 965 ------------~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D------g~i~vwd~~~-~~~~~~~ 1025 (1106)
..+..||..+.+-...-.. .......-+..-+++..+.|+.+ ..|..||..+ .+-...-
T Consensus 420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m--~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 420 NSIDMEEDTHSSNKVIRYDTVNNIWETLPNF--WTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred ccccccccccccceEEEECCCCCeEeecCCC--CcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence 2477888877654322111 01111111223356666667654 2467888887 4433211
Q ss_pred CCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCC--cEEEEeecCCCCccCCCCCCCC
Q 001295 1026 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG--GVHVFEPLESEGKWGVPPPVDN 1084 (1106)
Q Consensus 1026 ~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg--~v~vW~~~~~~~~~~~~~~~~~ 1084 (1106)
. ++.. .....++.. ++++.++|+.|| ++..+|+.+.+ |....|.-.
T Consensus 498 ~----m~~~-----r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~--W~~~~~~~~ 545 (557)
T PHA02713 498 T----TESR-----LSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE--WNHICHQHS 545 (557)
T ss_pred c----cCcc-----cccceeEEE--CCEEEEEeeecceeehhhcCccccc--ccchhhhcC
Confidence 1 2211 111123333 588999999998 77788888766 777666543
No 395
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.25 E-value=2.7 Score=46.86 Aligned_cols=288 Identities=12% Similarity=0.088 Sum_probs=151.4
Q ss_pred CceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEec-----CCCEEEEEe
Q 001295 755 GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-----NDSYVMSAS 829 (1106)
Q Consensus 755 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~-----~~~~l~~~s 829 (1106)
...+++|+..|.++||+.....+.+..-. +.. ....+|..+..-. +...||+-.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~ll----------------lE~-----~l~~PILqv~~G~F~s~~~~~~LaVLh 95 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLL----------------LET-----QLKDPILQVECGKFVSGSEDLQLAVLH 95 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEE----------------EEE-----ecCCcEEEEEeccccCCCCcceEEEec
Confidence 45788999999999998754333222111 111 1355666665432 344667766
Q ss_pred CCeEEEEEcCC--Cc-------eeeeecCCCC--CeeEEEEecC----CCceEEEeeCCCcEEEEEeecceEEEEecCcc
Q 001295 830 GGKISLFNMMT--FK-------TMATFMPPPP--AATFLAFHPQ----DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS 894 (1106)
Q Consensus 830 dg~i~vwd~~~--~~-------~~~~~~~~~~--~v~~l~~s~~----d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~ 894 (1106)
-..+.||.+.. +. .+..+..|.- ....+++-|- +..+|.+-+-||.+.+|+-+.......+.+ .
T Consensus 96 P~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~ 174 (418)
T PF14727_consen 96 PRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-F 174 (418)
T ss_pred CCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-C
Confidence 78888888731 11 1111112221 1222222221 236888999999999999766544444444 2
Q ss_pred cCeeEEEEecCCCEEEEEcCCCcEEEEeCCCccccccee-------ecccCCCC----------CCCCCCceEEEcCCCc
Q 001295 895 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF-------LQIPTGRT----------PTAQSDTRVQFHQDQI 957 (1106)
Q Consensus 895 ~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~-------~~~~~~~~----------~~~~~i~~~~~s~dg~ 957 (1106)
---..++|.+.-..+++++.+..+.-|....-....... -....+.. ...-.+..+.++....
T Consensus 175 llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~ 254 (418)
T PF14727_consen 175 LLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSES 254 (418)
T ss_pred CCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCc
Confidence 223457888888899999999888888753211000000 00000000 0001122233333444
Q ss_pred EEEEEeCCeEEEEecCCceEeeecccCCCCCC--eeEEEECCCCC---EEEEEEcCCeEEEEEcCCceeEEeeCCCcccC
Q 001295 958 HFLVVHETQLAIFETTKLECVKQWVPRESSAP--ITHATFSCDSQ---LVYACFLDATVCVFSAANLKLRCRINPSAYLP 1032 (1106)
Q Consensus 958 ~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~--v~~l~~s~d~~---~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~ 1032 (1106)
.+++-.++.+.+.+.. |........+..... ++.+.+..++. .++.++.++++.||.=.+..--+.+ +
T Consensus 255 ~IvvLger~Lf~l~~~-G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l------~ 327 (418)
T PF14727_consen 255 DIVVLGERSLFCLKDN-GSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQL------P 327 (418)
T ss_pred eEEEEecceEEEEcCC-CeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCC------C
Confidence 5555566667776663 454444333221111 11111122322 4788889999999985443333332 2
Q ss_pred CCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCCCcc
Q 001295 1033 AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1076 (1106)
Q Consensus 1033 ~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~~~~ 1076 (1106)
+. .| .+.++..++-...|++-+.+|.|.+-=+-|.....
T Consensus 328 ~~----PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~~ 366 (418)
T PF14727_consen 328 HV----PV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSLF 366 (418)
T ss_pred CC----CE-EEEecccCCCCceEEEEcCCCcEEEEEeCCCCccc
Confidence 11 12 22333333335689999999999988776655333
No 396
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.22 E-value=1.3 Score=45.26 Aligned_cols=186 Identities=9% Similarity=0.125 Sum_probs=114.6
Q ss_pred CCeeEEEEecCCCEEEEEe-CC--eEEEEEcCCCceeeeecCCCC-CeeEEEEecCCCceEEEeeCCCcEEEEEeecceE
Q 001295 811 EAVPCFALSKNDSYVMSAS-GG--KISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 886 (1106)
Q Consensus 811 ~~v~~l~~s~~~~~l~~~s-dg--~i~vwd~~~~~~~~~~~~~~~-~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~ 886 (1106)
.-...+.|..+|.++-+.+ -| .|+.+|+.+++......-... ---.++.. ++++....-.++...+||..+.+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence 3345678878888777776 44 699999999988766442221 12344554 456777778899999999999998
Q ss_pred EEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCC
Q 001295 887 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET 965 (1106)
Q Consensus 887 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~ 965 (1106)
+.++.-. +.=+.|+ .|++.|+..+....|.++|.++.+.... +.+.....+ -..+.-+-|- +|...|=. ...
T Consensus 123 ~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~--i~V~~~g~p-v~~LNELE~i-~G~IyANVW~td 195 (264)
T PF05096_consen 123 IGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRT--IQVTDNGRP-VSNLNELEYI-NGKIYANVWQTD 195 (264)
T ss_dssp EEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEE--EE-EETTEE----EEEEEEE-TTEEEEEETTSS
T ss_pred EEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEE--EEEEECCEE-CCCcEeEEEE-cCEEEEEeCCCC
Confidence 8888643 4456777 5677777777777899999887654332 222222111 1233445554 56555544 667
Q ss_pred eEEEEecCCceEeeecccC----------CC---CCCeeEEEECCCCCEE-EEE
Q 001295 966 QLAIFETTKLECVKQWVPR----------ES---SAPITHATFSCDSQLV-YAC 1005 (1106)
Q Consensus 966 ~v~i~d~~~~~~~~~~~~~----------~h---~~~v~~l~~s~d~~~l-~t~ 1005 (1106)
.|...|..+|+++..+... .+ ..-...||+.|....| +||
T Consensus 196 ~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 196 RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 8888899999987765321 01 3457899998876654 444
No 397
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.21 E-value=0.11 Score=57.73 Aligned_cols=158 Identities=13% Similarity=0.169 Sum_probs=91.6
Q ss_pred CCCeeEEEEecCCCceEEEee--CCCcEEEEEeecceEEEEecCcccCeeEEEEecC----CCEEEEEcCCCcEEEEeCC
Q 001295 851 PPAATFLAFHPQDNNIIAIGM--DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA----LNVLVSSGADSQLCVWSSD 924 (1106)
Q Consensus 851 ~~~v~~l~~s~~d~~~la~g~--~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d----~~~l~s~s~Dg~i~vwd~~ 924 (1106)
-.++..++|.. +.+.+.+.- .+|.+++=| .+.+..| ..|.+++|.|- ...|...-....|.||.+.
T Consensus 19 iHPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 34688899974 444444432 344444322 2344444 45899999985 3345555566789999987
Q ss_pred Ccccccceee--cccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCc--eEeeecccCCCCCCeeEEEECCCC
Q 001295 925 GWEKQKNRFL--QIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKL--ECVKQWVPRESSAPITHATFSCDS 999 (1106)
Q Consensus 925 ~~~~~~~~~~--~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~--~~~~~~~~~~h~~~v~~l~~s~d~ 999 (1106)
.........+ +.-+-..+.+--...+.|+|....|++ .....-.++++... +....+. ..+.|.|.+|..||
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~---~~G~IhCACWT~DG 167 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK---TSGLIHCACWTKDG 167 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc---CCceEEEEEecCcC
Confidence 3322222222 222111121223467899999999988 43333344555433 3333332 26789999999999
Q ss_pred CEEEEEEc-CCeEEEEEcCCc
Q 001295 1000 QLVYACFL-DATVCVFSAANL 1019 (1106)
Q Consensus 1000 ~~l~t~s~-Dg~i~vwd~~~~ 1019 (1106)
+.|+.+-. .=.-+|||-...
T Consensus 168 ~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred CEEEEEeCCeEEEEEecCchh
Confidence 99776542 234688986544
No 398
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.17 E-value=1.1 Score=45.81 Aligned_cols=204 Identities=13% Similarity=0.155 Sum_probs=120.3
Q ss_pred ccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccc-cccCCCCCCCCeeEEEEe
Q 001295 741 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT-NDVTDSNPEEAVPCFALS 819 (1106)
Q Consensus 741 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~v~~l~~s 819 (1106)
+-...+.+++|+|+.+.|++..+.....||=- ..|.++. ..+.+ -.....|.+.
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt----------------------~~GdlirtiPL~g---~~DpE~Ieyi 137 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELT----------------------KEGDLIRTIPLTG---FSDPETIEYI 137 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEe----------------------cCCceEEEecccc---cCChhHeEEe
Confidence 34556999999999999999988766555421 1333322 22322 3345567888
Q ss_pred cCCCEEEEEe-CCeEEEEEcCCCceeeee----------cCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecce---
Q 001295 820 KNDSYVMSAS-GGKISLFNMMTFKTMATF----------MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE--- 885 (1106)
Q Consensus 820 ~~~~~l~~~s-dg~i~vwd~~~~~~~~~~----------~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~--- 885 (1106)
.+|+++++-- ++.+.++.+........+ ...+...-.++|+| ..+.|..+-+-.-+.||.+..+.
T Consensus 138 g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l 216 (316)
T COG3204 138 GGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSL 216 (316)
T ss_pred cCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCccc
Confidence 8888877776 788888877644322111 11244577899999 55566666777777777765322
Q ss_pred EEEEecCcc-------cCeeEEEEecC-CCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCc
Q 001295 886 VKSKLKGHS-------KRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI 957 (1106)
Q Consensus 886 ~~~~l~~h~-------~~V~~l~~s~d-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~ 957 (1106)
.......++ ..|.++.|.+. +.+|+-+.+++.+.-.|....-........-..|-.........++..++|.
T Consensus 217 ~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~ 296 (316)
T COG3204 217 SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN 296 (316)
T ss_pred ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCC
Confidence 111111222 34667778754 5667777778877777776532211111222222222223446788888888
Q ss_pred EEEEEeCCeEEEE
Q 001295 958 HFLVVHETQLAIF 970 (1106)
Q Consensus 958 ~l~~~~d~~v~i~ 970 (1106)
..+++.-+-.+.+
T Consensus 297 lYIvSEPnlfy~F 309 (316)
T COG3204 297 LYIVSEPNLFYRF 309 (316)
T ss_pred EEEEecCCcceec
Confidence 7777655544433
No 399
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.13 E-value=0.11 Score=44.74 Aligned_cols=102 Identities=11% Similarity=0.242 Sum_probs=62.6
Q ss_pred eEEEEEcC---C-CceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295 746 ISRLIFTN---S-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 821 (1106)
Q Consensus 746 i~~~~~s~---~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 821 (1106)
|+++++.. + .+.|++++.|..|++|+-.. . ..++. ....|++++-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e------------------------~-~~Ei~---e~~~v~~L~~~~~ 53 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE------------------------I-VAEIT---ETDKVTSLCSLGG 53 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc------------------------E-EEEEe---cccceEEEEEcCC
Confidence 44555543 3 25799999999999996321 1 11111 4667888888777
Q ss_pred CCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCC---CceEEEeeCCCcEEE
Q 001295 822 DSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQD---NNIIAIGMDDSSIQI 878 (1106)
Q Consensus 822 ~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d---~~~la~g~~dg~v~i 878 (1106)
+++...-.+|+|-+|+-.. .+...+ ....++++++...+ -.-|++|-.+|.|-+
T Consensus 54 ~~F~Y~l~NGTVGvY~~~~--RlWRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 54 GRFAYALANGTVGVYDRSQ--RLWRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred CEEEEEecCCEEEEEeCcc--eeeeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 5544444489999998643 223333 23346666665422 247889999998753
No 400
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.07 E-value=0.91 Score=47.40 Aligned_cols=145 Identities=13% Similarity=0.059 Sum_probs=89.3
Q ss_pred CCeeEEEEecCCCEEEEEe--CCe--EEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEE-eecce
Q 001295 811 EAVPCFALSKNDSYVMSAS--GGK--ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN-VRVDE 885 (1106)
Q Consensus 811 ~~v~~l~~s~~~~~l~~~s--dg~--i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd-~~~~~ 885 (1106)
..+.+.+++++++.++... ++. ++++... ....... ....++.-.|++ ++.+.+....+...+++. ..+++
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCc
Confidence 3688999999999887765 444 5555443 3333322 233788889999 687777777677777774 23332
Q ss_pred EE-EEecC--cccCeeEEEEecCCCEEEEEc---CCCcEEEEeCCCcccc-c---ceeecccCCCCCCCCCCceEEEcCC
Q 001295 886 VK-SKLKG--HSKRITGLAFSHALNVLVSSG---ADSQLCVWSSDGWEKQ-K---NRFLQIPTGRTPTAQSDTRVQFHQD 955 (1106)
Q Consensus 886 ~~-~~l~~--h~~~V~~l~~s~d~~~l~s~s---~Dg~i~vwd~~~~~~~-~---~~~~~~~~~~~~~~~~i~~~~~s~d 955 (1106)
.. ..+.. -...|+++.+||||..+|... .++.|.|=-+...... . ......... ....+..+.|.++
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~---~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPP---LLSDVTDVAWSDD 176 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccc---ccCcceeeeecCC
Confidence 21 11211 112899999999999887665 3567777655432221 1 111111111 1246789999999
Q ss_pred CcEEEEE
Q 001295 956 QIHFLVV 962 (1106)
Q Consensus 956 g~~l~~~ 962 (1106)
+.+++.+
T Consensus 177 ~~L~V~~ 183 (253)
T PF10647_consen 177 STLVVLG 183 (253)
T ss_pred CEEEEEe
Confidence 9988874
No 401
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.06 E-value=0.35 Score=50.52 Aligned_cols=150 Identities=16% Similarity=0.058 Sum_probs=88.5
Q ss_pred CeeEEEEecCCCceEEEee-CCCcEEEEEeecceEEEEe-cCcccCeeEEEEecCCCEEEEEcCCCcEEEEe-CCCcccc
Q 001295 853 AATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDEVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWS-SDGWEKQ 929 (1106)
Q Consensus 853 ~v~~l~~s~~d~~~la~g~-~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd-~~~~~~~ 929 (1106)
.+.+.++|+ ++..+|... .++.-.+|-...+.....+ .+ ..++.-.|++++...+....+...+++. ...++..
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999 666655544 3333344433333323332 33 3788889999988877777777777774 2232221
Q ss_pred cceeecccCCCCCCCCCCceEEEcCCCcEEEEEe----CCeEEEEecC---Cc--eEe-eeccc-CCCCCCeeEEEECCC
Q 001295 930 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----ETQLAIFETT---KL--ECV-KQWVP-RESSAPITHATFSCD 998 (1106)
Q Consensus 930 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~----d~~v~i~d~~---~~--~~~-~~~~~-~~h~~~v~~l~~s~d 998 (1106)
...+...... ..|..+.+||||..+|... ++.|.+--+. .+ ..+ ..... ......++.+.|.++
T Consensus 102 -~~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 102 -PVEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD 176 (253)
T ss_pred -eEEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence 1112211110 1689999999999999833 5677766543 22 011 00110 122568999999999
Q ss_pred CCEEEEEEcCCe
Q 001295 999 SQLVYACFLDAT 1010 (1106)
Q Consensus 999 ~~~l~t~s~Dg~ 1010 (1106)
+.+++.+...+.
T Consensus 177 ~~L~V~~~~~~~ 188 (253)
T PF10647_consen 177 STLVVLGRSAGG 188 (253)
T ss_pred CEEEEEeCCCCC
Confidence 998776654443
No 402
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.04 E-value=2.6 Score=44.79 Aligned_cols=231 Identities=12% Similarity=0.034 Sum_probs=111.9
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeec---CCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec-ceE-
Q 001295 812 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFM---PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEV- 886 (1106)
Q Consensus 812 ~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~---~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~-~~~- 886 (1106)
...++.|..+ ..+++|..+. .+...+.++.-..+. .-.+....+.... ++..++. +..|.|+. ... |+.
T Consensus 63 ~l~~I~f~~~-~g~ivG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l~-~~~G~iy~--T~DgG~tW 136 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAELA-GDRGAIYR--TTDGGKTW 136 (302)
T ss_dssp EEEEEEEETT-EEEEEEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEEE-ETT--EEE--ESSTTSSE
T ss_pred eEEEEEecCC-ceEEEcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEEE-cCCCcEEE--eCCCCCCe
Confidence 3567777643 4555565553 333333444333322 1123334444433 3434443 44555433 322 322
Q ss_pred EEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCe
Q 001295 887 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQ 966 (1106)
Q Consensus 887 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~ 966 (1106)
......-.+.+..+.-++||++++++..-....-||-... ......... ...|..+.|+|++...+++..+.
T Consensus 137 ~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~---~w~~~~r~~-----~~riq~~gf~~~~~lw~~~~Gg~ 208 (302)
T PF14870_consen 137 QAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT---TWQPHNRNS-----SRRIQSMGFSPDGNLWMLARGGQ 208 (302)
T ss_dssp EEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S---S-EEEE--S-----SS-EEEEEE-TTS-EEEEETTTE
T ss_pred eEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCc---cceEEccCc-----cceehhceecCCCCEEEEeCCcE
Confidence 1223344577889999999999998877666677775421 112222221 14789999999999888888888
Q ss_pred EEEEe-cCCceEeee--cccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccce
Q 001295 967 LAIFE-TTKLECVKQ--WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1043 (1106)
Q Consensus 967 v~i~d-~~~~~~~~~--~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1043 (1106)
|+.=+ ....+.... .........+..++|.+++...|+|+ .|++. ...+.|+--.+.......+.. .+
T Consensus 209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~-~S~DgGktW~~~~~~~~~~~n-----~~-- 279 (302)
T PF14870_consen 209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL-VSTDGGKTWQKDRVGENVPSN-----LY-- 279 (302)
T ss_dssp EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE-EESSTTSS-EE-GGGTTSSS----------
T ss_pred EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE-EeCCCCccceECccccCCCCc-----eE--
Confidence 88876 222222111 11112244589999999988877665 56554 366777665554422223322 55
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEE
Q 001295 1044 VIAAHPQEPNEFALGLSDGGVHVF 1067 (1106)
Q Consensus 1044 ~~~~~~~d~~~l~t~~~Dg~v~vW 1067 (1106)
.+.|.+ ++.-.+.+.||.|--|
T Consensus 280 ~i~f~~--~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 280 RIVFVN--PDKGFVLGQDGVLLRY 301 (302)
T ss_dssp EEEEEE--TTEEEEE-STTEEEEE
T ss_pred EEEEcC--CCceEEECCCcEEEEe
Confidence 788886 3455555678887655
No 403
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.02 E-value=0.4 Score=41.40 Aligned_cols=66 Identities=14% Similarity=0.181 Sum_probs=47.8
Q ss_pred eeEEEE---cCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeC
Q 001295 460 VNDIAF---SHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 532 (1106)
Q Consensus 460 V~~~~~---s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 532 (1106)
|+++++ ..||.. .|+.|+.|..|++|+ ....+..+.. ...|.+++-.. . ..++.+..+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~-eLlvGs~D~~IRvf~--~~e~~~Ei~e-~~~v~~L~~~~--~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGEN-ELLVGSDDFEIRVFK--GDEIVAEITE-TDKVTSLCSLG--G-GRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcc-eEEEecCCcEEEEEe--CCcEEEEEec-ccceEEEEEcC--C-CEEEEEecCCEEEEEeC
Confidence 445554 446655 799999999999997 4466777764 45677776332 2 57999999999999865
No 404
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=95.98 E-value=0.0077 Score=55.31 Aligned_cols=82 Identities=21% Similarity=0.295 Sum_probs=65.7
Q ss_pred cccchhhhHHHHHHHHHHHhCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccchhhccCCC-------chHH
Q 001295 67 RYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-------TKSA 139 (1106)
Q Consensus 67 ~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~l~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~-------~~~~ 139 (1106)
++.. ++|+++.+.||||+.++..++|..++++.-..+...+.+++++|+.+....++.+++....+++ .+.+
T Consensus 25 EL~~-lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~~Ky~i~ms~~s 103 (133)
T cd08044 25 ELSQ-LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAKLFRSNKYVIRMSRDA 103 (133)
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHHHHHhCCEEEEECHHH
Confidence 4444 9999999999999999999999999998877777778999999999998888887776665555 3455
Q ss_pred HHHHHHHHHh
Q 001295 140 RSIMLVELKK 149 (1106)
Q Consensus 140 r~~l~~~l~~ 149 (1106)
-..|+..|++
T Consensus 104 ~~lL~~~L~~ 113 (133)
T cd08044 104 YSLLLRFLES 113 (133)
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 405
>PRK10115 protease 2; Provisional
Probab=95.97 E-value=4.7 Score=49.00 Aligned_cols=196 Identities=9% Similarity=0.031 Sum_probs=100.8
Q ss_pred CCeeEEEEecCCCEEEEEeC--C----eEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeC-C-----CcEEE
Q 001295 811 EAVPCFALSKNDSYVMSASG--G----KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-D-----SSIQI 878 (1106)
Q Consensus 811 ~~v~~l~~s~~~~~l~~~sd--g----~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~-d-----g~v~i 878 (1106)
-.+..+.+|||+++|+.+.| | .|++.|+.++..+...-... -..++|++ |++.|+.... + ..|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~-D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWAN-DSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEee-CCCEEEEEEecCCCCCCCEEEE
Confidence 34667889999999998863 3 48899998876432221111 14699999 6654444432 2 36788
Q ss_pred EEeecc--eEEEEecCcccCee-EEEEecCCCEEEEEc---CCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEE
Q 001295 879 YNVRVD--EVKSKLKGHSKRIT-GLAFSHALNVLVSSG---ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 952 (1106)
Q Consensus 879 wd~~~~--~~~~~l~~h~~~V~-~l~~s~d~~~l~s~s---~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 952 (1106)
+++.++ +....+........ .+..+.|+++++..+ .++.+.+|+...........+....+ ....+.
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~- 276 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKD------HEYSLD- 276 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCC------CEEEEE-
Confidence 888877 33333443223333 333455888766443 34568888853321111111111111 112222
Q ss_pred cCCCcEEEEEeC----CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcC
Q 001295 953 HQDQIHFLVVHE----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1017 (1106)
Q Consensus 953 s~dg~~l~~~~d----~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~ 1017 (1106)
...+.+++.... ..|...++.+......+........|..+.++ .+.++++...+|.-+++-++
T Consensus 277 ~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 277 HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 223333333321 23444455421111223221113468888887 33556667777775555443
No 406
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.89 E-value=0.028 Score=54.51 Aligned_cols=104 Identities=15% Similarity=0.201 Sum_probs=71.8
Q ss_pred CCEEEEEe-CCeEEEEEcCCCc-eeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcc-cCee
Q 001295 822 DSYVMSAS-GGKISLFNMMTFK-TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRIT 898 (1106)
Q Consensus 822 ~~~l~~~s-dg~i~vwd~~~~~-~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~-~~V~ 898 (1106)
+.-+++|. +|.|.+|+..... ....+......|.+..-.-+++.+..++..||.|+.|++.-++.+...-.|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 34455565 9999999876322 2122222223344433333356689999999999999999998888877787 6666
Q ss_pred EEEEecCCCEEEEE--cCCCcEEEEeCCC
Q 001295 899 GLAFSHALNVLVSS--GADSQLCVWSSDG 925 (1106)
Q Consensus 899 ~l~~s~d~~~l~s~--s~Dg~i~vwd~~~ 925 (1106)
.+..+..++.|+++ |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 66677777778777 7888888888765
No 407
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=95.86 E-value=0.0091 Score=55.50 Aligned_cols=82 Identities=20% Similarity=0.302 Sum_probs=59.5
Q ss_pred cccchhhhHHHHHHHHHHHhCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccchhhccCCC-------chHH
Q 001295 67 RYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-------TKSA 139 (1106)
Q Consensus 67 ~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~l~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~-------~~~~ 139 (1106)
++.. ++|+|+.|.||+|+..++.++|..++.+.-..+...+.+++++|..+....++.+++....++. .+.+
T Consensus 36 EL~~-lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~~~~~~r~~Ky~I~ls~~s 114 (142)
T PF04494_consen 36 ELSR-LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENELARLFRSNKYVIRLSRDS 114 (142)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSHHHHHHHCSGEEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccHHHHHHHhCCeeEEECHHH
Confidence 3455 9999999999999999999999999998877787778888999988777766665554443433 3455
Q ss_pred HHHHHHHHHh
Q 001295 140 RSIMLVELKK 149 (1106)
Q Consensus 140 r~~l~~~l~~ 149 (1106)
-..|+..|++
T Consensus 115 ~~lL~~fL~~ 124 (142)
T PF04494_consen 115 FSLLLQFLQE 124 (142)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555543
No 408
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.82 E-value=0.032 Score=39.84 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=28.5
Q ss_pred CcCeEEEEEccCCCEEEEEeCCCeEEEEEcc
Q 001295 412 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYH 442 (1106)
Q Consensus 412 ~~~V~~l~~spdg~~las~~~d~~v~iwd~~ 442 (1106)
...|.+++|||...+||.++.+|.|.++.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4479999999999999999999999999983
No 409
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.82 E-value=0.91 Score=53.50 Aligned_cols=235 Identities=9% Similarity=0.080 Sum_probs=127.2
Q ss_pred ecCCCEEEEEe-C------CeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCceEEEeeCC-C-----cEEEEEeec
Q 001295 819 SKNDSYVMSAS-G------GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDD-S-----SIQIYNVRV 883 (1106)
Q Consensus 819 s~~~~~l~~~s-d------g~i~vwd~~~~~~~~~--~~~~~~~v~~l~~s~~d~~~la~g~~d-g-----~v~iwd~~~ 883 (1106)
+..+.++++|+ + ..+..+|..++..... +. ....-.++++. ++.+.++|+.| | ++..||..+
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE--CCEEEEEccccCCCcccceEEEecCCC
Confidence 33455666665 3 3488888887644322 22 22224445554 57899999999 3 677888776
Q ss_pred ce--EEEEecCcccCeeEEEEecCCCEEEEEcCCCc-----EEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCC
Q 001295 884 DE--VKSKLKGHSKRITGLAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 956 (1106)
Q Consensus 884 ~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg 956 (1106)
.+ .+..+........... -+|.+.|+||.||. +..||..+.+ +......... .-..-+..-+|
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~---W~~va~m~~~-----r~~~gv~~~~g 428 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNK---WTPVAPMLTR-----RSGHGVAVLGG 428 (571)
T ss_pred CceeccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCc---ccccCCCCcc-----eeeeEEEEECC
Confidence 54 2222322222222122 26888999999964 6677766632 1111111000 11122333466
Q ss_pred cEEEE-EeC------CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCC-----eEEEEEcCCceeEEe
Q 001295 957 IHFLV-VHE------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKLRCR 1024 (1106)
Q Consensus 957 ~~l~~-~~d------~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg-----~i~vwd~~~~~~~~~ 1024 (1106)
+..++ |.+ ..+..||..+......-.... ...-..++ .-++...+.|+.|+ +|..||..+.+-...
T Consensus 429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v 506 (571)
T KOG4441|consen 429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT-RRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV 506 (571)
T ss_pred EEEEEcCcCCCccccceEEEEcCCCCceeecCCccc-ccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence 66666 323 468899988876544322111 11111122 23667777788776 377788887765533
Q ss_pred eCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCC-----cEEEEeecCCCCccCCCCC
Q 001295 1025 INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG-----GVHVFEPLESEGKWGVPPP 1081 (1106)
Q Consensus 1025 ~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg-----~v~vW~~~~~~~~~~~~~~ 1081 (1106)
-. +... .....++-. ++...++|+.|| +|..||..+.+ |....+
T Consensus 507 ~~----m~~~-----rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~~ 555 (571)
T KOG4441|consen 507 AP----MTSP-----RSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT--WTEVTE 555 (571)
T ss_pred cc----Cccc-----cccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc--eeeCCC
Confidence 21 1211 111123333 578889999888 57778877765 665554
No 410
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.81 E-value=4.4 Score=45.65 Aligned_cols=156 Identities=12% Similarity=0.030 Sum_probs=85.7
Q ss_pred CCeeEEEEcCCCCceEEEEec--CCCcEEEEeCCCCceeEEEeccCCCeEEEeccccC--CceEEEEEecCCeEEEEeCC
Q 001295 458 GGVNDIAFSHPNKQLCVITCG--DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE--NIQFIFSTALDGKIKAWLYD 533 (1106)
Q Consensus 458 ~~V~~~~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~~l~s~~~dg~i~iwd~~ 533 (1106)
.+|..++|. ||++ +++|.- ..|.+++=| .+.+. .-..|..++|.|.. +...+++.-..+.|.+|.+.
T Consensus 20 HPvhGlaWT-DGkq-VvLT~L~l~~gE~kfGd---s~viG----qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQ-VVLTDLQLHNGEPKFGD---SKVIG----QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEec-CCCE-EEEEeeeeeCCccccCC---ccEee----ccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 478999996 7776 455532 223332222 12233 33468888887652 22357777888999999876
Q ss_pred CCCcee--EeeCCCCee-EEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCc--ceeEEEccCC
Q 001295 534 NLGSRV--DYEAPGRWC-TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV--QLLTSIDADG 608 (1106)
Q Consensus 534 ~~~~~~--~~~~~~~~v-~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~ 608 (1106)
...... -+......+ ..+-.-|+| +.|+|....|+.-.....-.++++... +....++..
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQG--------------CVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~- 155 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQG--------------CVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTS- 155 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCc--------------ccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCC-
Confidence 321110 000000000 011112222 568888877776554444445555433 333334333
Q ss_pred CCCCcCeEEEccCCCEEEEEeCC-CcEEEEEc
Q 001295 609 GLPASPRIRFNKDGCLLAVSTND-NGIKILAT 639 (1106)
Q Consensus 609 ~~~~v~~v~~s~~~~~l~~~~~d-g~i~iwd~ 639 (1106)
+.|.|.+|.+||+.|+++-.. =.-++||-
T Consensus 156 --G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 156 --GLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred --ceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 459999999999998877543 23567874
No 411
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.74 E-value=1.3 Score=48.23 Aligned_cols=192 Identities=14% Similarity=0.147 Sum_probs=93.4
Q ss_pred eEEEEecCCCEEEEEe---C----CeEEEEEcCCCceeeeecCCCC---CeeEEEEecCCCceEEEee------------
Q 001295 814 PCFALSKNDSYVMSAS---G----GKISLFNMMTFKTMATFMPPPP---AATFLAFHPQDNNIIAIGM------------ 871 (1106)
Q Consensus 814 ~~l~~s~~~~~l~~~s---d----g~i~vwd~~~~~~~~~~~~~~~---~v~~l~~s~~d~~~la~g~------------ 871 (1106)
..+-.-|+|+.++++- + |.+.+.|-++.+.......... --..+-+.| ..+.+++..
T Consensus 133 HT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~ 211 (461)
T PF05694_consen 133 HTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFN 211 (461)
T ss_dssp EEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---
T ss_pred ceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCC
Confidence 3445557898888772 2 4588999888877766543222 234566677 556666543
Q ss_pred --------CCCcEEEEEeecceEEEEecCcc--cCeeEEEEecC--CCEEEE-EcCCCcEEEE-eCCCcccccceeeccc
Q 001295 872 --------DDSSIQIYNVRVDEVKSKLKGHS--KRITGLAFSHA--LNVLVS-SGADSQLCVW-SSDGWEKQKNRFLQIP 937 (1106)
Q Consensus 872 --------~dg~v~iwd~~~~~~~~~l~~h~--~~V~~l~~s~d--~~~l~s-~s~Dg~i~vw-d~~~~~~~~~~~~~~~ 937 (1106)
...++.+||+.+.+.++++.--. .....|.|.++ ..+=++ +.-.++|..| ..+.++-.....+.+.
T Consensus 212 ~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip 291 (461)
T PF05694_consen 212 PEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIP 291 (461)
T ss_dssp TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE-
T ss_pred hhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECC
Confidence 23489999999999999886533 23566777654 333222 2233344444 3233332223333332
Q ss_pred CCC-------------CCCCCCCceEEEcCCCcEEEEE--eCCeEEEEecCCc---eEeeecccCCC-------------
Q 001295 938 TGR-------------TPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKL---ECVKQWVPRES------------- 986 (1106)
Q Consensus 938 ~~~-------------~~~~~~i~~~~~s~dg~~l~~~--~d~~v~i~d~~~~---~~~~~~~~~~h------------- 986 (1106)
... .....-|+.+..|.|.++|.++ ..|.|+.||+..- +.+.+....+-
T Consensus 292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~ 371 (461)
T PF05694_consen 292 AKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKR 371 (461)
T ss_dssp -EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS----
T ss_pred CcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccc
Confidence 211 0012467899999999999995 7899999999763 33433332221
Q ss_pred -CCCeeEEEECCCCCEEEEEE
Q 001295 987 -SAPITHATFSCDSQLVYACF 1006 (1106)
Q Consensus 987 -~~~v~~l~~s~d~~~l~t~s 1006 (1106)
.+...-|..|-||+.|...+
T Consensus 372 l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 372 LRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp --S----EEE-TTSSEEEEE-
T ss_pred cCCCCCeEEEccCCeEEEEEe
Confidence 12346788899999987654
No 412
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.73 E-value=3.2 Score=50.45 Aligned_cols=220 Identities=13% Similarity=0.144 Sum_probs=118.3
Q ss_pred eEEEeeCCCcEEEEEeecceEEEEecCcccC--------eeEEEEe----------------cCCCEEEEEcCCCcEEEE
Q 001295 866 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR--------ITGLAFS----------------HALNVLVSSGADSQLCVW 921 (1106)
Q Consensus 866 ~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~--------V~~l~~s----------------~d~~~l~s~s~Dg~i~vw 921 (1106)
.|..++.++.|+-.|..+|+.+-++...... ...+++- .++..|+.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 5555677788888888888887666432210 1223332 134578888899999988
Q ss_pred eCCCccccccee----ecccCCCCCCCCCCceEEEcC---CCcEEEEEe----------CCeEEEEecCCceEeeecccC
Q 001295 922 SSDGWEKQKNRF----LQIPTGRTPTAQSDTRVQFHQ---DQIHFLVVH----------ETQLAIFETTKLECVKQWVPR 984 (1106)
Q Consensus 922 d~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~s~---dg~~l~~~~----------d~~v~i~d~~~~~~~~~~~~~ 984 (1106)
|.++++.....- +....+.......-..+.-+| ++..++.+. +|.|+-+|+++|+.+-.+...
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 998887532100 000000000000000111112 344444321 578999999999987665431
Q ss_pred C----------------CCCCeeEEEECCCCCEEEEEE------------------cCCeEEEEEcCCceeEEeeCCCcc
Q 001295 985 E----------------SSAPITHATFSCDSQLVYACF------------------LDATVCVFSAANLKLRCRINPSAY 1030 (1106)
Q Consensus 985 ~----------------h~~~v~~l~~s~d~~~l~t~s------------------~Dg~i~vwd~~~~~~~~~~~~~~~ 1030 (1106)
. ....-..+++.++...++.+. ..++|.-.|.+||+..-.++..++
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 0 011113445555555544322 124566679999998877762110
Q ss_pred -cCCCCCCCCccceEEEEeCCCCC---EEEEEeCCCcEEEEeecCCCCccCCC-CCCCCCCC
Q 001295 1031 -LPAGVSSSNVHPLVIAAHPQEPN---EFALGLSDGGVHVFEPLESEGKWGVP-PPVDNGST 1087 (1106)
Q Consensus 1031 -~~~~~~~~~v~~~~~~~~~~d~~---~l~t~~~Dg~v~vW~~~~~~~~~~~~-~~~~~~~~ 1087 (1106)
+-+- +..-.++.+.+...+|+ .++.++.+|.+++.|-.+|+..|..+ +|...+.+
T Consensus 436 D~WD~--D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e~~vp~~~~ 495 (764)
T TIGR03074 436 DLWDM--DVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEEVPVPQGAV 495 (764)
T ss_pred ccccc--cccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeeceeecCCccCC
Confidence 0000 11111222223221453 78999999999999999999777632 34343433
No 413
>PHA02713 hypothetical protein; Provisional
Probab=95.57 E-value=0.72 Score=54.49 Aligned_cols=188 Identities=10% Similarity=0.061 Sum_probs=95.7
Q ss_pred cCCCEEEEEe-C------CeEEEEEcCCCceee--eecCCCCCeeEEEEecCCCceEEEeeCCC-----cEEEEEeecce
Q 001295 820 KNDSYVMSAS-G------GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDE 885 (1106)
Q Consensus 820 ~~~~~l~~~s-d------g~i~vwd~~~~~~~~--~~~~~~~~v~~l~~s~~d~~~la~g~~dg-----~v~iwd~~~~~ 885 (1106)
-++...+.|+ + ..+..||..+..... .+....... +++. - ++++.+.|+.++ .+..||..+.+
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~-~-~g~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV-I-DDTIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE-E-CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence 3666667665 3 237788877654321 121111112 2222 2 688888898765 47889987643
Q ss_pred --EEEEecCcccCeeEEEEecCCCEEEEEcCCC-----------------------cEEEEeCCCcccccceeecccCCC
Q 001295 886 --VKSKLKGHSKRITGLAFSHALNVLVSSGADS-----------------------QLCVWSSDGWEKQKNRFLQIPTGR 940 (1106)
Q Consensus 886 --~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-----------------------~i~vwd~~~~~~~~~~~~~~~~~~ 940 (1106)
.+..+.........++ -+|+..+.||.++ .+..||..+.+ +..+......
T Consensus 379 W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~---W~~v~~m~~~ 453 (557)
T PHA02713 379 WKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI---WETLPNFWTG 453 (557)
T ss_pred EEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe---EeecCCCCcc
Confidence 3223222111122222 3688888888653 36677766532 1111111100
Q ss_pred CCCCCCCceEEEcCCCcEEEEE-eC------CeEEEEecCC-ceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCC--e
Q 001295 941 TPTAQSDTRVQFHQDQIHFLVV-HE------TQLAIFETTK-LECVKQWVPRESSAPITHATFSCDSQLVYACFLDA--T 1010 (1106)
Q Consensus 941 ~~~~~~i~~~~~s~dg~~l~~~-~d------~~v~i~d~~~-~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg--~ 1010 (1106)
.....+..-+|+..++| .+ ..+..||..+ .+-...-...........+.+ +|+..++|+.|| +
T Consensus 454 -----r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~ 526 (557)
T PHA02713 454 -----TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYML 526 (557)
T ss_pred -----cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceee
Confidence 11112223345555554 22 2467899887 443222111111222222233 788888999888 7
Q ss_pred EEEEEcCCceeE
Q 001295 1011 VCVFSAANLKLR 1022 (1106)
Q Consensus 1011 i~vwd~~~~~~~ 1022 (1106)
+..||..+.+-.
T Consensus 527 ~e~yd~~~~~W~ 538 (557)
T PHA02713 527 QDTFNVYTYEWN 538 (557)
T ss_pred hhhcCccccccc
Confidence 777887776544
No 414
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.52 E-value=1.3 Score=45.21 Aligned_cols=170 Identities=7% Similarity=0.047 Sum_probs=112.1
Q ss_pred ecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEE
Q 001295 890 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLA 968 (1106)
Q Consensus 890 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~ 968 (1106)
+.|-...|.++.|+|+.+.|++......-.||=...|+.....++.... ....+.+..+|++.++- .++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~-------DpE~Ieyig~n~fvi~dER~~~l~ 153 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS-------DPETIEYIGGNQFVIVDERDRALY 153 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC-------ChhHeEEecCCEEEEEehhcceEE
Confidence 3454555999999999999999998888888876777765554444432 34778999999998884 778888
Q ss_pred EEecCCceEeeec-----cc--CCC-CCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCC---
Q 001295 969 IFETTKLECVKQW-----VP--RES-SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSS--- 1037 (1106)
Q Consensus 969 i~d~~~~~~~~~~-----~~--~~h-~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--- 1037 (1106)
++.+.....+... .. ..+ ....-.++|+|....|..+-+-.=+.||.+..+..--... ....+..
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~----~~~~~~~~~~ 229 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVH----ASLDPTADRD 229 (316)
T ss_pred EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccc----cccCcccccc
Confidence 8877655322221 11 122 5567889999999999888877777777765332111110 0001000
Q ss_pred ---CCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCC
Q 001295 1038 ---SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1072 (1106)
Q Consensus 1038 ---~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~ 1072 (1106)
..+. ++.|.+..+.+|+-+.+++.|...+....
T Consensus 230 ~f~~DvS--gl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 230 LFVLDVS--GLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred eEeeccc--cceecCCCCcEEEEecCCceEEEEecCCC
Confidence 0133 67888777778888888887776665543
No 415
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=95.46 E-value=8.5 Score=46.50 Aligned_cols=105 Identities=11% Similarity=0.121 Sum_probs=67.4
Q ss_pred EEEecCCCEEEEEeCCeEEEEEcCCCceeeeec--CCCCCeeEEEEecCCCceEEEeeCCCcEEEEEe--ecceEEEEec
Q 001295 816 FALSKNDSYVMSASGGKISLFNMMTFKTMATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV--RVDEVKSKLK 891 (1106)
Q Consensus 816 l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~--~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~--~~~~~~~~l~ 891 (1106)
.+..|...++.+|-...+++||+...++++... .-...|+.+.+ .+..+++|+.--.|..+.. ...++ ..+.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~~~~y~~~~n~l-~~fa 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVHFVRYRREDNQL-IVFA 1014 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee---cceEEEEeeccceEEEEEEecCCCeE-EEEe
Confidence 345577778888888999999998877765533 23456777777 4467777776666655443 33443 3343
Q ss_pred C--cccCeeEEEEecCCCEEEEEcCCCcEEEEeCCC
Q 001295 892 G--HSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 925 (1106)
Q Consensus 892 ~--h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~ 925 (1106)
. -...|+++.+- |-..+|.++.=|.+.+-.+..
T Consensus 1015 dD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred CCCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence 2 22346666554 556788888778777766544
No 416
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.43 E-value=0.04 Score=53.48 Aligned_cols=108 Identities=12% Similarity=0.027 Sum_probs=59.4
Q ss_pred EEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCceEeeecccCCC
Q 001295 908 VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRES 986 (1106)
Q Consensus 908 ~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~~~~~~~~~~h 986 (1106)
.|..-+.||.|+-+++..-+........... ....---+..+++ +.++.|.+|....-.........+
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e----------~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~- 100 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDE----------GQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG- 100 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhc----------ceeecccCceEEeecccceEEEecCCccchHHHhhhcc-
Confidence 3445567888888877653221110000000 0111122334445 689999999876322222211111
Q ss_pred CCCee-EEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295 987 SAPIT-HATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus 987 ~~~v~-~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
...|. .+.-..++.+..+++.||.||.|++.-++.+....
T Consensus 101 ~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g 141 (238)
T KOG2444|consen 101 EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG 141 (238)
T ss_pred cccceeccccccccceeEEeccCCceeeeccccCceeeeec
Confidence 22222 23333466688899999999999999988887655
No 417
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.35 E-value=0.051 Score=38.83 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=29.9
Q ss_pred CCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCce
Q 001295 987 SAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1020 (1106)
Q Consensus 987 ~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~ 1020 (1106)
...|.+++|+|...+||.++.||.|.++++ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 567999999999999999999999999998 444
No 418
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.23 E-value=4.5 Score=48.72 Aligned_cols=95 Identities=13% Similarity=0.103 Sum_probs=60.2
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCeEEEEEcCC-CceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEE
Q 001295 809 PEEAVPCFALSKNDSYVMSASGGKISLFNMMT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 887 (1106)
Q Consensus 809 ~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~-~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~ 887 (1106)
....|..+.++++|++++..+...|.|..+.. +..-..+.+....|.|=.+.- +..++.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~~------------------- 142 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFFT------------------- 142 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhcc-------------------
Confidence 45678999999999999998877777766642 111122333333333333322 222221
Q ss_pred EEecCcccCeeEEEEecC---CCEEEEEcCCCcEEEEeCCCc
Q 001295 888 SKLKGHSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDGW 926 (1106)
Q Consensus 888 ~~l~~h~~~V~~l~~s~d---~~~l~s~s~Dg~i~vwd~~~~ 926 (1106)
..+...|..+.|+|. +..|+.-..|+++|+||+...
T Consensus 143 ---~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 143 ---SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred ---CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 123455777888886 478888999999999999753
No 419
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.15 E-value=3.6 Score=40.42 Aligned_cols=141 Identities=16% Similarity=0.149 Sum_probs=79.5
Q ss_pred cCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccC--------CCeEEEeccccCCceEEEEEecCCeEE
Q 001295 457 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE--------APVYSVCPHHKENIQFIFSTALDGKIK 528 (1106)
Q Consensus 457 ~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~--------~~v~~~~~~~~~~~~~l~s~~~dg~i~ 528 (1106)
..+.+.-..+|+|+ +++..-.|-.- +.....|....-+.+|. +--+.++|..+ ...+-++-+.+-.|.
T Consensus 108 knR~NDgkvdP~Gr--yy~GtMad~~~-~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d-~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGR--YYGGTMADFGD-DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSD-AKKFYYIDSLNYEVD 183 (310)
T ss_pred hcccccCccCCCCc--eeeeeeccccc-cccccccEEEEeccCCCceeeehhccCCcccccccc-CcEEEEEccCceEEe
Confidence 44667777899999 43321111110 11111222222233332 23345677633 234566667788888
Q ss_pred EEeCCCCCc-------eeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCccee
Q 001295 529 AWLYDNLGS-------RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL 601 (1106)
Q Consensus 529 iwd~~~~~~-------~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 601 (1106)
-||.+-... +..+.... +. =..-||| +++..+|+..++.-..++|...|..+|+.+
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~-~~--e~~~PDG--------------m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L 246 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQ-PF--ESLEPDG--------------MTIDTEGNLYVATFNGGTVQKVDPTTGKIL 246 (310)
T ss_pred eeecCCCcccccCcceeEEeccCC-Cc--CCCCCCc--------------ceEccCCcEEEEEecCcEEEEECCCCCcEE
Confidence 888542211 11111100 00 0112333 344567788888889999999999999999
Q ss_pred EEEccCCCCCCcCeEEEcc
Q 001295 602 TSIDADGGLPASPRIRFNK 620 (1106)
Q Consensus 602 ~~~~~~~~~~~v~~v~~s~ 620 (1106)
..+... ...++|++|--
T Consensus 247 ~eiklP--t~qitsccFgG 263 (310)
T KOG4499|consen 247 LEIKLP--TPQITSCCFGG 263 (310)
T ss_pred EEEEcC--CCceEEEEecC
Confidence 999877 56899999965
No 420
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.03 E-value=1.6 Score=42.77 Aligned_cols=142 Identities=11% Similarity=0.089 Sum_probs=84.4
Q ss_pred CCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcc--------cCeeEEEEecCCCEEE-EEcCCCcEEEEe
Q 001295 852 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS--------KRITGLAFSHALNVLV-SSGADSQLCVWS 922 (1106)
Q Consensus 852 ~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~--------~~V~~l~~s~d~~~l~-s~s~Dg~i~vwd 922 (1106)
...+.-..+| +|++.+-...|-. .++....+.+..-+.+|. +--+.++|+.|.+.+. .-+.+-+|.-||
T Consensus 109 nR~NDgkvdP-~Gryy~GtMad~~-~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d 186 (310)
T KOG4499|consen 109 NRLNDGKVDP-DGRYYGGTMADFG-DDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD 186 (310)
T ss_pred cccccCccCC-CCceeeeeecccc-ccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence 3455566788 8888543222211 122222333333333333 2235688988776654 445566787787
Q ss_pred --CCCcccccceeec-ccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceEeeecccCCCCCCeeEEEECC
Q 001295 923 --SDGWEKQKNRFLQ-IPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSC 997 (1106)
Q Consensus 923 --~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~ 997 (1106)
..+|.......+- ............-.++...+|.+.++. ..++|.-.|..+|+.+..+... ...|+|+||--
T Consensus 187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP--t~qitsccFgG 263 (310)
T KOG4499|consen 187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP--TPQITSCCFGG 263 (310)
T ss_pred cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC--CCceEEEEecC
Confidence 6666544432222 111111111234566777788887775 6789999999999999988754 78999999954
No 421
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.93 E-value=7 Score=43.61 Aligned_cols=138 Identities=15% Similarity=0.131 Sum_probs=78.7
Q ss_pred CCeeEEEEecCCCEEEEEe------------CC-eEEEEEcCC--Cce--eeeecCCCCCeeEEEEecCCCceEEEeeCC
Q 001295 811 EAVPCFALSKNDSYVMSAS------------GG-KISLFNMMT--FKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDD 873 (1106)
Q Consensus 811 ~~v~~l~~s~~~~~l~~~s------------dg-~i~vwd~~~--~~~--~~~~~~~~~~v~~l~~s~~d~~~la~g~~d 873 (1106)
.....|+|.++|+++++-. .+ .|.+++-.+ ++. ...+.........+++.+ ++ +++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence 4467899999999887742 23 677776542 322 233333344568899988 77 444 3444
Q ss_pred CcEEEE-Eeec-------ce-EEEEecC----cccCeeEEEEecCCCEEEEEcCC-------------------CcEEEE
Q 001295 874 SSIQIY-NVRV-------DE-VKSKLKG----HSKRITGLAFSHALNVLVSSGAD-------------------SQLCVW 921 (1106)
Q Consensus 874 g~v~iw-d~~~-------~~-~~~~l~~----h~~~V~~l~~s~d~~~l~s~s~D-------------------g~i~vw 921 (1106)
.|..| |... .+ ++..+.. +......++|.|||.+.++.+.. |.|.-+
T Consensus 91 -~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 -DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred -eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 34433 4321 11 2222322 23447789999999887766631 334444
Q ss_pred eCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE
Q 001295 922 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 961 (1106)
Q Consensus 922 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 961 (1106)
+.++++. .....+. .....++|+++|+++++
T Consensus 170 ~pdg~~~-----e~~a~G~----rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 170 NPDGGKL-----RVVAHGF----QNPYGHSVDSWGDVFFC 200 (367)
T ss_pred ecCCCeE-----EEEecCc----CCCccceECCCCCEEEE
Confidence 4444321 1122222 24578999999999887
No 422
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.79 E-value=1.4 Score=48.17 Aligned_cols=203 Identities=11% Similarity=0.159 Sum_probs=93.6
Q ss_pred CceEEE-eeCCCcEEEEEeec----ceEEEEecC---cc----cCeeEEEEecCCCEEEEEcC--C----CcEEEEeCCC
Q 001295 864 NNIIAI-GMDDSSIQIYNVRV----DEVKSKLKG---HS----KRITGLAFSHALNVLVSSGA--D----SQLCVWSSDG 925 (1106)
Q Consensus 864 ~~~la~-g~~dg~v~iwd~~~----~~~~~~l~~---h~----~~V~~l~~s~d~~~l~s~s~--D----g~i~vwd~~~ 925 (1106)
.++|+. |-..+.|+|+|+.+ .++.+.+.. +. ..-..+-.-|+|..++|+=. + |-+.+.|-++
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 445554 55888999999984 345555543 11 11122333478988888632 2 3477777766
Q ss_pred cccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEe---------------------CCeEEEEecCCceEeeecccC
Q 001295 926 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH---------------------ETQLAIFETTKLECVKQWVPR 984 (1106)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~---------------------d~~v~i~d~~~~~~~~~~~~~ 984 (1106)
.+..... ....+. ..--..+.+.|.-+.++++. ..++.+||+.+.+.++.+...
T Consensus 167 f~v~g~W--e~~~~~---~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg 241 (461)
T PF05694_consen 167 FEVKGRW--EKDRGP---QPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG 241 (461)
T ss_dssp --EEEE----SB-TT---------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-
T ss_pred cccccee--ccCCCC---CCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC
Confidence 4432211 111111 12336678888888777632 247999999999999998875
Q ss_pred CCCCCeeEEEECCC--CCE-EEEEEcCCeEEEEEc-CCcee----EEeeCCCc---c-cCC-----CCCCCCccceEEEE
Q 001295 985 ESSAPITHATFSCD--SQL-VYACFLDATVCVFSA-ANLKL----RCRINPSA---Y-LPA-----GVSSSNVHPLVIAA 1047 (1106)
Q Consensus 985 ~h~~~v~~l~~s~d--~~~-l~t~s~Dg~i~vwd~-~~~~~----~~~~~~~~---~-~~~-----~~~~~~v~~~~~~~ 1047 (1106)
.....+..|.|..+ ..+ ++.+...++|..|-- +.++- +..+.... . +|. +... -.++.|..
T Consensus 242 ~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P--~LitDI~i 319 (461)
T PF05694_consen 242 EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVP--PLITDILI 319 (461)
T ss_dssp TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE--------EEE
T ss_pred CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCC--CceEeEEE
Confidence 54445777887654 444 333334555555533 44432 22222110 0 100 0000 11236777
Q ss_pred eCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295 1048 HPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus 1048 ~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
|.+|..+.++.=.+|.|+.+||++..
T Consensus 320 SlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 320 SLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp -TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred ccCCCEEEEEcccCCcEEEEecCCCC
Confidence 77554445566689999999999876
No 423
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.69 E-value=5.6 Score=40.27 Aligned_cols=259 Identities=11% Similarity=0.052 Sum_probs=153.3
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEE
Q 001295 809 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 887 (1106)
Q Consensus 809 ~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~ 887 (1106)
.......++-+|||..-.++. .+.|--.|-.+++....--+....-..|..-| |+..-++-+.. .|.-.|-++.+..
T Consensus 60 ~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~evt 137 (353)
T COG4257 60 NGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEVT 137 (353)
T ss_pred CCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccceE
Confidence 345566788889998888777 57777778888877665555555667778888 44444432222 4555555554322
Q ss_pred -EE--ecCcccCeeEEEEecCCCEEEEEcCC---------CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCC
Q 001295 888 -SK--LKGHSKRITGLAFSHALNVLVSSGAD---------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 955 (1106)
Q Consensus 888 -~~--l~~h~~~V~~l~~s~d~~~l~s~s~D---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d 955 (1106)
.. ++.-........|.++|.+-+++... +.|++|+... | .....++..||
T Consensus 138 ~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq-------------G-----~gpyGi~atpd 199 (353)
T COG4257 138 RFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ-------------G-----GGPYGICATPD 199 (353)
T ss_pred EeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC-------------C-----CCCcceEECCC
Confidence 11 12234557788899999988887532 3455555433 2 24578999999
Q ss_pred CcEEEEE-eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCC
Q 001295 956 QIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG 1034 (1106)
Q Consensus 956 g~~l~~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1034 (1106)
|....++ .++.|...|..++.....-....-...-..+.-+|.|+.-++....+.+.-||-.+.. -..+. +|..
T Consensus 200 Gsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eyp----LPgs 274 (353)
T COG4257 200 GSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYP----LPGS 274 (353)
T ss_pred CcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeee----CCCC
Confidence 9988874 5566666676665322222222212233445557788887887777888888866554 33333 3322
Q ss_pred CCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC-CccCCCCCCCCCCCCCCCCCCCCCC
Q 001295 1035 VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE-GKWGVPPPVDNGSTSSMPATPPVGG 1098 (1106)
Q Consensus 1035 ~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 1098 (1106)
...-+ ++.... .+..-.+--..|.|.-+|..+.. ..+..++| ..|.+..++..--+|.
T Consensus 275 --~arpy--s~rVD~-~grVW~sea~agai~rfdpeta~ftv~p~pr~-n~gn~ql~gr~ge~W~ 333 (353)
T COG4257 275 --KARPY--SMRVDR-HGRVWLSEADAGAIGRFDPETARFTVLPIPRP-NSGNIQLDGRPGELWF 333 (353)
T ss_pred --CCCcc--eeeecc-CCcEEeeccccCceeecCcccceEEEecCCCC-CCCceeccCCCCceee
Confidence 11122 333332 23444444556778888887777 66666666 4446666555544443
No 424
>PRK10115 protease 2; Provisional
Probab=94.64 E-value=15 Score=44.87 Aligned_cols=245 Identities=10% Similarity=0.040 Sum_probs=114.6
Q ss_pred cceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCC
Q 001295 744 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 823 (1106)
Q Consensus 744 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~ 823 (1106)
..+..+.++||+++|+.+.+.+.-.-++ +.+.++.+|..+...+.+ . -..++|++|++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~-----------------l~v~d~~tg~~l~~~i~~---~--~~~~~w~~D~~ 184 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYG-----------------IRFRNLETGNWYPELLDN---V--EPSFVWANDSW 184 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEE-----------------EEEEECCCCCCCCccccC---c--ceEEEEeeCCC
Confidence 4567788999999887775542222221 123344455433222221 1 14599999998
Q ss_pred EEEEEe-C------CeEEEEEcCCC--ceeeeecCCCCCee-EEEEecCCCceEEEeeC---CCcEEEEEee--cceEEE
Q 001295 824 YVMSAS-G------GKISLFNMMTF--KTMATFMPPPPAAT-FLAFHPQDNNIIAIGMD---DSSIQIYNVR--VDEVKS 888 (1106)
Q Consensus 824 ~l~~~s-d------g~i~vwd~~~~--~~~~~~~~~~~~v~-~l~~s~~d~~~la~g~~---dg~v~iwd~~--~~~~~~ 888 (1106)
.|+... + ..|+.+++.++ +....+........ .+..+. ++++++..+. ++.+.+|+.. +++...
T Consensus 185 ~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~ 263 (686)
T PRK10115 185 TFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTT-SKHYVVIHLASATTSEVLLLDAELADAEPFV 263 (686)
T ss_pred EEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcC-CCCEEEEEEECCccccEEEEECcCCCCCceE
Confidence 777664 2 25788888877 33333443333333 333343 6666555443 3478888842 333222
Q ss_pred EecCcccCeeEEEEecCCCEEEEEcCC-CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE--EeCC
Q 001295 889 KLKGHSKRITGLAFSHALNVLVSSGAD-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHET 965 (1106)
Q Consensus 889 ~l~~h~~~V~~l~~s~d~~~l~s~s~D-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~--~~d~ 965 (1106)
.+..-.+....+. +..+.+++....+ ...+|..+.-........+..... ...+..+.+. +.+|+. ..++
T Consensus 264 ~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~----~~~i~~~~~~--~~~l~~~~~~~g 336 (686)
T PRK10115 264 FLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRE----NIMLEGFTLF--TDWLVVEERQRG 336 (686)
T ss_pred EEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCC----CCEEEEEEEE--CCEEEEEEEeCC
Confidence 2221122222222 2233333333222 233344332211111122221111 1245667776 334444 3555
Q ss_pred e--EEEEecCCceEeeecccCCCCCCeeEEEEC--CCCC-EEEEEEc---CCeEEEEEcCCce
Q 001295 966 Q--LAIFETTKLECVKQWVPRESSAPITHATFS--CDSQ-LVYACFL---DATVCVFSAANLK 1020 (1106)
Q Consensus 966 ~--v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s--~d~~-~l~t~s~---Dg~i~vwd~~~~~ 1020 (1106)
. +.+++..++. +..+.... ...+..+.++ +++. ++++.+. -+.++.+|..+++
T Consensus 337 ~~~l~~~~~~~~~-~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 337 LTSLRQINRKTRE-VIGIAFDD-PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEEEEcCCCCc-eEEecCCC-CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 4 5555654333 33322111 1223334444 4444 4444432 3679999998875
No 425
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.61 E-value=5 Score=40.59 Aligned_cols=201 Identities=13% Similarity=0.134 Sum_probs=127.1
Q ss_pred CeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccce
Q 001295 853 AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNR 932 (1106)
Q Consensus 853 ~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~ 932 (1106)
.-..++-+| ||..-.++...|.|--.|..+|+....--+....-..|..-|||..-++-+.. -|.-.|-++.+..
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt--- 137 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT--- 137 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE---
Confidence 345677778 88888888888888888888888776666666666778888998877765444 3555555554332
Q ss_pred eecccCCCCCCCCCCceEEEcCCCcEEEEEeCC----------eEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEE
Q 001295 933 FLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET----------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV 1002 (1106)
Q Consensus 933 ~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~----------~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l 1002 (1106)
.......+.. .......|.++|++..++..| .|++|+.. ....-+.|+..|||..-
T Consensus 138 ~f~lp~~~a~--~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP------------qG~gpyGi~atpdGsvw 203 (353)
T COG4257 138 RFPLPLEHAD--ANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP------------QGGGPYGICATPDGSVW 203 (353)
T ss_pred EeecccccCC--CcccceeeCCCccEEEeeccccceecCcccCceeeeccC------------CCCCCcceEECCCCcEE
Confidence 1222222222 577889999999999885433 34455443 24456788999999988
Q ss_pred EEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC-CccCCCCC
Q 001295 1003 YACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE-GKWGVPPP 1081 (1106)
Q Consensus 1003 ~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~-~~~~~~~~ 1081 (1106)
++.-.+..|...|-.++... ++....-+..+ .. .+--+| -+..-+|....+.++.+|.++.. ..|.++..
T Consensus 204 yaslagnaiaridp~~~~ae-v~p~P~~~~~g-----sR--riwsdp-ig~~wittwg~g~l~rfdPs~~sW~eypLPgs 274 (353)
T COG4257 204 YASLAGNAIARIDPFAGHAE-VVPQPNALKAG-----SR--RIWSDP-IGRAWITTWGTGSLHRFDPSVTSWIEYPLPGS 274 (353)
T ss_pred EEeccccceEEcccccCCcc-eecCCCccccc-----cc--ccccCc-cCcEEEeccCCceeeEeCcccccceeeeCCCC
Confidence 87777777777787776332 33311211212 11 232334 36667777777788888776655 34444433
No 426
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.49 E-value=6 Score=40.61 Aligned_cols=189 Identities=11% Similarity=0.080 Sum_probs=102.2
Q ss_pred ccceEEEEEcCCCceEEEeecCc--eEEEeeccccccCCCCccccccCccccCCCCCCccc-cccCCCCCCCCeeEEEEe
Q 001295 743 ATKISRLIFTNSGNAILALASNA--IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT-NDVTDSNPEEAVPCFALS 819 (1106)
Q Consensus 743 ~~~i~~~~~s~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~v~~l~~s 819 (1106)
..-...+.|..++..+-+++.-| .++.+|+ .+|+... ..+. ...--..++..
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~----------------------~tg~~~~~~~l~---~~~FgEGit~~ 98 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDL----------------------ETGKVLQSVPLP---PRYFGEGITIL 98 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEET----------------------TTSSEEEEEE-T---TT--EEEEEEE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEEC----------------------CCCcEEEEEECC---ccccceeEEEE
Confidence 34456788888888777777765 4554444 4554332 1121 22233445554
Q ss_pred cCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcc-----
Q 001295 820 KNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS----- 894 (1106)
Q Consensus 820 ~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~----- 894 (1106)
.|.-+.++--++...+||..+.+.+.++.-. +.=..++. |++.|+..+....++++|..+.+....+.-..
T Consensus 99 ~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv 174 (264)
T PF05096_consen 99 GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPV 174 (264)
T ss_dssp TTEEEEEESSSSEEEEEETTTTEEEEEEE-S-SS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE-
T ss_pred CCEEEEEEecCCeEEEEccccceEEEEEecC-CcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEEC
Confidence 4433333334899999999999988887643 45566663 55666666667789999988776666554321
Q ss_pred cCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeccc-------CCCCCCCCCCceEEEcCCCcEEEE
Q 001295 895 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP-------TGRTPTAQSDTRVQFHQDQIHFLV 961 (1106)
Q Consensus 895 ~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~~~s~dg~~l~~ 961 (1106)
..++-|.|- +|...|=.=....|..-|..+|+.....-+... ....+...-...+|+.|....+.+
T Consensus 175 ~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~v 247 (264)
T PF05096_consen 175 SNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFV 247 (264)
T ss_dssp --EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEE
T ss_pred CCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEE
Confidence 245556665 566555554555566667777654332211111 111111234578999887666555
No 427
>PRK13684 Ycf48-like protein; Provisional
Probab=94.43 E-value=9.4 Score=41.83 Aligned_cols=156 Identities=10% Similarity=0.051 Sum_probs=89.4
Q ss_pred CCCeeEEEEecCCCceEEEeeCCCcEEE-EEeecceEEEE-ecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCccc
Q 001295 851 PPAATFLAFHPQDNNIIAIGMDDSSIQI-YNVRVDEVKSK-LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK 928 (1106)
Q Consensus 851 ~~~v~~l~~s~~d~~~la~g~~dg~v~i-wd~~~~~~~~~-l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~ 928 (1106)
...+..+.+.+ ++.++++|. .|.+.. ++ ..++.-.. -.+-...++++.+.++++.++.+ ..|.+++=..+.++.
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 45688999999 777776654 565543 22 11221222 22334678999999998877654 567654322333221
Q ss_pred ccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEeeeccc-CCCCCCeeEEEECCCCCEEEEEEc
Q 001295 929 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYACFL 1007 (1106)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~-~~h~~~v~~l~~s~d~~~l~t~s~ 1007 (1106)
.......... ....+..+++.+++..++++.+|.+.. ....++.-..... ..-....+.+.|..+++.+++| .
T Consensus 248 --W~~~~~~~~~--~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~ 321 (334)
T PRK13684 248 --WSKPIIPEIT--NGYGYLDLAYRTPGEIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-Q 321 (334)
T ss_pred --cccccCCccc--cccceeeEEEcCCCCEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-C
Confidence 1111111000 112467889999999888888876653 4444443322221 1113467888888777776655 6
Q ss_pred CCeEEEEEc
Q 001295 1008 DATVCVFSA 1016 (1106)
Q Consensus 1008 Dg~i~vwd~ 1016 (1106)
.|.|--|+-
T Consensus 322 ~G~il~~~~ 330 (334)
T PRK13684 322 RGVLLRYVG 330 (334)
T ss_pred CceEEEecC
Confidence 888887763
No 428
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.34 E-value=0.032 Score=64.27 Aligned_cols=178 Identities=13% Similarity=0.189 Sum_probs=103.5
Q ss_pred CeEEEEEcC--CCceeeee-----cCCCCCeeEEEEecC--CCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEE
Q 001295 831 GKISLFNMM--TFKTMATF-----MPPPPAATFLAFHPQ--DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA 901 (1106)
Q Consensus 831 g~i~vwd~~--~~~~~~~~-----~~~~~~v~~l~~s~~--d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~ 901 (1106)
|.+.||++. .|+....+ ......+.-+.|.|- +.-++..+..++.|++........ ..+++|+..++.++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence 678888876 34433222 112223344444331 456777888889998877665332 45667887777765
Q ss_pred -----------EecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCC-------Cc--EEEE
Q 001295 902 -----------FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-------QI--HFLV 961 (1106)
Q Consensus 902 -----------~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d-------g~--~l~~ 961 (1106)
.||||..+|.++.||.++.|.+.-..+...+++...+.|.. ....|..|... +. ++++
T Consensus 232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p~vC~lc~~~~~~~v~i~~w~~~It 309 (1283)
T KOG1916|consen 232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HPRVCWLCHKQEILVVSIGKWVLRIT 309 (1283)
T ss_pred HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CCceeeeeccccccCCccceeEEEEe
Confidence 48999999999999999999876555555555555544432 22233334432 22 2333
Q ss_pred E--eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCC------------EEEEEEcCCeEEEEEc
Q 001295 962 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ------------LVYACFLDATVCVFSA 1016 (1106)
Q Consensus 962 ~--~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~------------~l~t~s~Dg~i~vwd~ 1016 (1106)
+ ....+++|.....+|.-.+. ...|..+. -+||+ .++.-+-|++|.+|.=
T Consensus 310 ttd~nre~k~w~~a~w~Cll~~~----~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn 373 (1283)
T KOG1916|consen 310 TTDVNREEKFWAEAPWQCLLDKL----IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQN 373 (1283)
T ss_pred cccCCcceeEeeccchhhhhhhc----ccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhc
Confidence 3 23568888877777763222 22333333 23332 1334556788888863
No 429
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=2.5 Score=40.69 Aligned_cols=178 Identities=10% Similarity=0.034 Sum_probs=97.4
Q ss_pred CCCEEEEEe---CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCe
Q 001295 821 NDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI 897 (1106)
Q Consensus 821 ~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V 897 (1106)
+|.++.+.+ ...|++||+.+++.+..-.-....+..=-...-+..+.+-.-.+|.-.+||..+.+++..+.- .+.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence 456666655 367999999998887654322222211111111334555566789999999999888777653 2333
Q ss_pred eEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCce
Q 001295 898 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE 976 (1106)
Q Consensus 898 ~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~ 976 (1106)
+.++ .|++-|+.++...+++.-|.++....... .....+..- ..+..+-|- ||...|- -....|...|.++|+
T Consensus 134 WgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v-~VT~~g~pv--~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGr 207 (262)
T COG3823 134 WGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTV-QVTDDGVPV--SKLNELEWV-DGELYANVWQTTRIARIDPDSGR 207 (262)
T ss_pred eeee--cCCcceEeeCCceEEEecCHHHhhhcceE-EEEECCeec--ccccceeee-ccEEEEeeeeecceEEEcCCCCc
Confidence 4444 46666777776777777776664332211 111122110 112222221 3444333 244555556666776
Q ss_pred EeeecccC----------CCCCCeeEEEECCCC-CEEEEE
Q 001295 977 CVKQWVPR----------ESSAPITHATFSCDS-QLVYAC 1005 (1106)
Q Consensus 977 ~~~~~~~~----------~h~~~v~~l~~s~d~-~~l~t~ 1005 (1106)
.+..+... .|..-...|++.|++ ++++||
T Consensus 208 V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 208 VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 65554322 234466788998887 455655
No 430
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.77 E-value=1.3 Score=51.61 Aligned_cols=124 Identities=10% Similarity=0.139 Sum_probs=76.8
Q ss_pred ecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEec-CcccCeeEEEEe--cCCCEEEEEcCCCcEEEEeC
Q 001295 847 FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-GHSKRITGLAFS--HALNVLVSSGADSQLCVWSS 923 (1106)
Q Consensus 847 ~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~-~h~~~V~~l~~s--~d~~~l~s~s~Dg~i~vwd~ 923 (1106)
+.......+-+.-|. -++..++-+....+.|||...+.+..+-. ...+.|.++.|. |||+.+.+.|-.+.|.++.-
T Consensus 25 ~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 25 FETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred EecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 333334455555555 45555555555689999998876432221 356789999985 78999999999999999853
Q ss_pred CCc----ccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEec
Q 001295 924 DGW----EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFET 972 (1106)
Q Consensus 924 ~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~ 972 (1106)
... .......+....-....+..|....|-++|.+++ +..+++.|+|-
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV-~sGNqlfv~dk 155 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVV-GSGNQLFVFDK 155 (631)
T ss_pred cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEE-EeCCEEEEECC
Confidence 211 1111111211111111224788999999998655 45677888764
No 431
>PHA03098 kelch-like protein; Provisional
Probab=93.74 E-value=3 Score=49.51 Aligned_cols=188 Identities=7% Similarity=-0.009 Sum_probs=91.4
Q ss_pred cCCCEEEEEe-C------CeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCceEEEeeCCC-----cEEEEEeecce
Q 001295 820 KNDSYVMSAS-G------GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDE 885 (1106)
Q Consensus 820 ~~~~~l~~~s-d------g~i~vwd~~~~~~~~~--~~~~~~~v~~l~~s~~d~~~la~g~~dg-----~v~iwd~~~~~ 885 (1106)
.++..++.|+ + ..+..||..+.+.... +.........+. - ++++++.|+.++ .+..||..+++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--F-NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--E-CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 4556666665 2 2477888876554322 111111222222 2 677888888663 57778876643
Q ss_pred E--EEEecCcccCeeEEEEecCCCEEEEEcCC------CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCc
Q 001295 886 V--KSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI 957 (1106)
Q Consensus 886 ~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~ 957 (1106)
- ...+...... .+++ .-+++..+.||.+ ..+..||..+.+ +..+...... .. ...+..-+++
T Consensus 370 W~~~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~---W~~~~~~p~~----r~-~~~~~~~~~~ 439 (534)
T PHA03098 370 WREEPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNK---WSKGSPLPIS----HY-GGCAIYHDGK 439 (534)
T ss_pred eeeCCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCe---eeecCCCCcc----cc-CceEEEECCE
Confidence 2 2222111111 1122 2366777777732 357888887633 1111111100 01 1122334556
Q ss_pred EEEEEe-C--------CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCceeE
Q 001295 958 HFLVVH-E--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1022 (1106)
Q Consensus 958 ~l~~~~-d--------~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D-----g~i~vwd~~~~~~~ 1022 (1106)
.++.|+ . ..+.+||..+.+-...-...........+.+ +++.++.|+.+ ..|.+||..+.+-.
T Consensus 440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 555542 1 2388899887654332111111111112222 67777777654 46888888776543
No 432
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.68 E-value=1.6 Score=50.90 Aligned_cols=124 Identities=10% Similarity=0.098 Sum_probs=76.1
Q ss_pred CeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEe-ccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCc
Q 001295 459 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS 537 (1106)
Q Consensus 459 ~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 537 (1106)
...-+.-|.-++ ..+..+...++.|||.+.+.....-. ...+.|.++.|...++++.+++.|..+.|.++--.....
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 444455555555 34444556689999999887554332 357899999999999999999999999999984321000
Q ss_pred eeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEEC
Q 001295 538 RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM 595 (1106)
Q Consensus 538 ~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 595 (1106)
... ...-..+..+. +..++..+|....|.++|..++++ ++.+.|++-
T Consensus 109 ~~~-~p~w~~i~~i~--------i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 109 TNK-GPSWAPIRKID--------ISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred hcC-CcccceeEEEE--------eecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 000 00001122222 223344466677777777655544 357788764
No 433
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=93.54 E-value=23 Score=43.10 Aligned_cols=111 Identities=11% Similarity=-0.003 Sum_probs=71.5
Q ss_pred ceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEE--EcCCceeEEee
Q 001295 948 TRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVF--SAANLKLRCRI 1025 (1106)
Q Consensus 948 ~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vw--d~~~~~~~~~~ 1025 (1106)
.-.+..|-..++.++-...+++||+-..+..+......-...|+++.+ .+..++.|...-.|.++ +-+..+++.-.
T Consensus 937 ~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fa 1014 (1205)
T KOG1898|consen 937 PVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFA 1014 (1205)
T ss_pred cceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEe
Confidence 345677877788888889999999988877666554333567788877 45678877766555554 44444444322
Q ss_pred CCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecC
Q 001295 1026 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus 1026 ~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
.+..|.. |. .+.+. |-..++.+..=|.+.+-++..
T Consensus 1015 --dD~~pR~-----Vt--~~~~l--D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1015 --DDPVPRH-----VT--ALELL--DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred --CCCccce-----ee--EEEEe--cCCceeeccccCcEEEEECCC
Confidence 2233322 33 44444 567888888888887777654
No 434
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.26 E-value=4.4 Score=47.89 Aligned_cols=193 Identities=9% Similarity=0.065 Sum_probs=100.5
Q ss_pred eEEEEecCCCEEEEEe-C-C-----eEEEEEcCCCceee--eecCCCCCeeEEEEecCCCceEEEeeCCC-----cEEEE
Q 001295 814 PCFALSKNDSYVMSAS-G-G-----KISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIY 879 (1106)
Q Consensus 814 ~~l~~s~~~~~l~~~s-d-g-----~i~vwd~~~~~~~~--~~~~~~~~v~~l~~s~~d~~~la~g~~dg-----~v~iw 879 (1106)
.++++- ++...++|+ | | ++..||..+.+... .+...........+ +|.+.|+|+.|| +|..|
T Consensus 326 ~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l---~g~iYavGG~dg~~~l~svE~Y 401 (571)
T KOG4441|consen 326 VGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL---DGKLYAVGGFDGEKSLNSVECY 401 (571)
T ss_pred ccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE---CCEEEEEeccccccccccEEEe
Confidence 344443 556667776 6 3 47788887665433 12222222222222 789999999997 46777
Q ss_pred Eeecce--EEEEecCcccCeeEEEEecCCCEEEEEcCCC------cEEEEeCCCcccccceeecccCCCCCCCCCCceEE
Q 001295 880 NVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGADS------QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 951 (1106)
Q Consensus 880 d~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 951 (1106)
|..+.+ .+..+.........+ .-+|+..+.||.|+ ++..||..+..=.....+..... -..++
T Consensus 402 Dp~~~~W~~va~m~~~r~~~gv~--~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~-------~~g~a 472 (571)
T KOG4441|consen 402 DPVTNKWTPVAPMLTRRSGHGVA--VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS-------GFGVA 472 (571)
T ss_pred cCCCCcccccCCCCcceeeeEEE--EECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc-------cceEE
Confidence 776543 222222211212222 23688888888664 46777777643222112222111 12233
Q ss_pred EcCCCcEEEE-EeCC-----eEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCC-----eEEEEEcCCce
Q 001295 952 FHQDQIHFLV-VHET-----QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLK 1020 (1106)
Q Consensus 952 ~s~dg~~l~~-~~d~-----~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg-----~i~vwd~~~~~ 1020 (1106)
.-++...++ |.|+ +|..||..+.+-...-........+....+ +++..++|+.|| +|..||..+.+
T Consensus 473 -~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 473 -VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred -EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence 334555555 5444 488899887765444222111222222222 566677787775 47777766655
Q ss_pred eE
Q 001295 1021 LR 1022 (1106)
Q Consensus 1021 ~~ 1022 (1106)
-.
T Consensus 550 W~ 551 (571)
T KOG4441|consen 550 WT 551 (571)
T ss_pred ee
Confidence 44
No 435
>PRK13684 Ycf48-like protein; Provisional
Probab=93.24 E-value=15 Score=40.19 Aligned_cols=157 Identities=11% Similarity=0.016 Sum_probs=87.2
Q ss_pred ccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecC
Q 001295 894 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT 973 (1106)
Q Consensus 894 ~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~ 973 (1106)
...+.++.+.+++.+++++ ..|.+.. ..+.+. ......... ....+..+.+.++++.++++..|.+.+=..+
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~-s~~~gg-~tW~~~~~~-----~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d 243 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYS-TWEPGQ-TAWTPHQRN-----SSRRLQSMGFQPDGNLWMLARGGQIRFNDPD 243 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEE-EcCCCC-CeEEEeeCC-----CcccceeeeEcCCCCEEEEecCCEEEEccCC
Confidence 4568899999998766555 4554432 111111 011112111 1246789999999998888877776533344
Q ss_pred CceEeeecccC--CCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCC
Q 001295 974 KLECVKQWVPR--ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1051 (1106)
Q Consensus 974 ~~~~~~~~~~~--~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d 1051 (1106)
.+..-...... .-...+.++.+.+++..++++ .+|.|. ...+.|+.-..+......+. ..+ .+.|..
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~-----~~~--~~~~~~-- 312 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPS-----NFY--KIVFLD-- 312 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCc-----ceE--EEEEeC--
Confidence 44332211110 113457889999988766654 677665 45565654443321111111 133 566664
Q ss_pred CCEEEEEeCCCcEEEEee
Q 001295 1052 PNEFALGLSDGGVHVFEP 1069 (1106)
Q Consensus 1052 ~~~l~t~~~Dg~v~vW~~ 1069 (1106)
++..+..+..|.|..|+-
T Consensus 313 ~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 313 PEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred CCceEEECCCceEEEecC
Confidence 344555667899887764
No 436
>PHA03098 kelch-like protein; Provisional
Probab=93.23 E-value=5.2 Score=47.56 Aligned_cols=193 Identities=13% Similarity=0.087 Sum_probs=93.2
Q ss_pred CCceEEEeeCCC------cEEEEEeecceEEE--EecCcccCeeEEEEecCCCEEEEEcCC-----CcEEEEeCCCcccc
Q 001295 863 DNNIIAIGMDDS------SIQIYNVRVDEVKS--KLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQ 929 (1106)
Q Consensus 863 d~~~la~g~~dg------~v~iwd~~~~~~~~--~l~~h~~~V~~l~~s~d~~~l~s~s~D-----g~i~vwd~~~~~~~ 929 (1106)
++.+++.|+.++ .+..||..+.+-.. .+.........+ .-+++..+.||.+ ..+..||..+.+
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~-- 369 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESK-- 369 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCc--
Confidence 566777776543 57778877654321 111111111222 2367788888865 346777776632
Q ss_pred cceeecccCCCCCCCCCCceEEEcCCCcEEEEEe---C----CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEE
Q 001295 930 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH---E----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV 1002 (1106)
Q Consensus 930 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~---d----~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l 1002 (1106)
+........ + ..-.++ ..-+++..+.|+ + +.+..||..+.+-...-.... ...-.++ ...++...
T Consensus 370 -W~~~~~lp~--~--r~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~-~r~~~~~-~~~~~~iy 441 (534)
T PHA03098 370 -WREEPPLIF--P--RYNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI-SHYGGCA-IYHDGKIY 441 (534)
T ss_pred -eeeCCCcCc--C--CccceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc-cccCceE-EEECCEEE
Confidence 111111110 0 011122 233556556542 1 458899988765432211111 1111122 22356666
Q ss_pred EEEEcC--------CeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCC-----CcEEEEee
Q 001295 1003 YACFLD--------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEP 1069 (1106)
Q Consensus 1003 ~t~s~D--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~D-----g~v~vW~~ 1069 (1106)
+.|+.+ ..+.+||..+++-...-. .+..... . .++.. ++.+++.|+.+ +.+.++|+
T Consensus 442 v~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~----~~~~r~~---~--~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 510 (534)
T PHA03098 442 VIGGISYIDNIKVYNIVESYNPVTNKWTELSS----LNFPRIN---A--SLCIF--NNKIYVVGGDKYEYYINEIEVYDD 510 (534)
T ss_pred EECCccCCCCCcccceEEEecCCCCceeeCCC----CCccccc---c--eEEEE--CCEEEEEcCCcCCcccceeEEEeC
Confidence 666543 238888988776543211 1111001 1 12222 46788888765 46777877
Q ss_pred cCCCCccCCCC
Q 001295 1070 LESEGKWGVPP 1080 (1106)
Q Consensus 1070 ~~~~~~~~~~~ 1080 (1106)
.+.+ |....
T Consensus 511 ~~~~--W~~~~ 519 (534)
T PHA03098 511 KTNT--WTLFC 519 (534)
T ss_pred CCCE--EEecC
Confidence 7655 65443
No 437
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.18 E-value=3 Score=40.22 Aligned_cols=183 Identities=11% Similarity=0.110 Sum_probs=100.7
Q ss_pred CCceEEEeeCCC--cEEEEEeecceEEEEecCcccCeeEEEEecCCCEEE-EEcCCCcEEEEeCCCcccccceeecccCC
Q 001295 863 DNNIIAIGMDDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDGWEKQKNRFLQIPTG 939 (1106)
Q Consensus 863 d~~~la~g~~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~-s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~ 939 (1106)
+++++.+.+.-| .|++||+.+|+.+..-.-....+..=-...-|..+. -.=.||.-.++|.++.+... ...-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg-----~~~y 129 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELG-----RFSY 129 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhc-----cccc
Confidence 567777766544 799999999887754332222222111111122222 22357778888888744322 1111
Q ss_pred CCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceEeeecccCCCCCCee---EEEECCCCCEEEEEEcCCeEEEEE
Q 001295 940 RTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPIT---HATFSCDSQLVYACFLDATVCVFS 1015 (1106)
Q Consensus 940 ~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~---~l~~s~d~~~l~t~s~Dg~i~vwd 1015 (1106)
.-.......|++.|+.+ ....++.-|.++......+.......+|. .+.|- ||...|-.=.+..|...+
T Consensus 130 ------~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~ 202 (262)
T COG3823 130 ------EGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARID 202 (262)
T ss_pred ------CCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEc
Confidence 11344555666666664 44566666766655444433222233333 33332 676666665666677778
Q ss_pred cCCceeEEeeCCCcccCCC----CCCCCccceEEEEeCCCCCEEEEEe
Q 001295 1016 AANLKLRCRINPSAYLPAG----VSSSNVHPLVIAAHPQEPNEFALGL 1059 (1106)
Q Consensus 1016 ~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~d~~~l~t~~ 1059 (1106)
.++|+.+..+..+...+.- ......+ .+++.|+.+++++||-
T Consensus 203 p~sGrV~~widlS~L~~~~~~~~~~~nvlN--GIA~~~~~~r~~iTGK 248 (262)
T COG3823 203 PDSGRVVAWIDLSGLLKELNLDKSNDNVLN--GIAHDPQQDRFLITGK 248 (262)
T ss_pred CCCCcEEEEEEccCCchhcCcccccccccc--ceeecCcCCeEEEecC
Confidence 8999988877654433221 1122234 7999997667777773
No 438
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.05 E-value=13 Score=38.72 Aligned_cols=223 Identities=14% Similarity=0.200 Sum_probs=121.5
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEEccCC----ceeeeeeeecc-----ccCCeeEEEEcCCCCc----------eEE
Q 001295 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG----DEVRQHLEIDA-----HVGGVNDIAFSHPNKQ----------LCV 474 (1106)
Q Consensus 414 ~V~~l~~spdg~~las~~~d~~v~iwd~~~~----~~~~~~~~l~~-----h~~~V~~~~~s~d~~~----------~~l 474 (1106)
.-+.|+++|.+.+-++....+...+||.... .......++.. -....+.+.|+..... ..+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 4578999999988888777889999998711 11111112221 2345777888754331 136
Q ss_pred EEecCCCcEEEEeCCCCce-----eEEEe-ccCCCe-EEEeccccCCceEEEEE-ecCCeEEEEeCCCCCcee--EeeCC
Q 001295 475 ITCGDDKTIKVWDATNGAK-----QYIFE-GHEAPV-YSVCPHHKENIQFIFST-ALDGKIKAWLYDNLGSRV--DYEAP 544 (1106)
Q Consensus 475 ~s~~~d~~i~iwd~~~~~~-----~~~~~-~h~~~v-~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~--~~~~~ 544 (1106)
+.+++||+|.-|...-+.. ...+. +..+.| ..+++.....+.+|+.+ -..++|.++|-.-..... .+..+
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 7788999999998532222 11222 112222 33444333333445444 357888888754221110 01000
Q ss_pred CCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEcc----
Q 001295 545 GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK---- 620 (1106)
Q Consensus 545 ~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---- 620 (1106)
. + -.-|.|-+-..+ ...--++...-.+++..=+.+..-|.|-+||. .|..++.+...+....-+.++..|
T Consensus 184 ~--i-PagyAPFnIqni--g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 184 A--L-PAGYAPFNVQNL--GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred C--C-CCCCCCcceEEE--CCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 0 0 000111100000 00001111122333333455566789999998 678888886555555566777765
Q ss_pred --CCCEEEEEeCCCcEEEEEccCC
Q 001295 621 --DGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 621 --~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
.|.+|+---.||+|..+|..++
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSG 281 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCC
Confidence 4778887778999999999887
No 439
>PHA02790 Kelch-like protein; Provisional
Probab=92.99 E-value=5.8 Score=46.12 Aligned_cols=184 Identities=10% Similarity=-0.019 Sum_probs=88.6
Q ss_pred cCCCEEEEEe-C-----CeEEEEEcCCCceee--eecCCCCCeeEEEEecCCCceEEEeeCCC--cEEEEEeecce--EE
Q 001295 820 KNDSYVMSAS-G-----GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDE--VK 887 (1106)
Q Consensus 820 ~~~~~l~~~s-d-----g~i~vwd~~~~~~~~--~~~~~~~~v~~l~~s~~d~~~la~g~~dg--~v~iwd~~~~~--~~ 887 (1106)
.++..+++|+ + .++..||..+.+... .+.........+ .- ++++.++|+.++ .+..||..+++ .+
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PA-NNKLYVVGGLPNPTSVERWFHGDAAWVNM 346 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EE-CCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence 3455566665 3 246778877654322 222111122222 23 778888888643 57788876543 22
Q ss_pred EEecCcccCeeEEEEecCCCEEEEEcCCC---cEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeC
Q 001295 888 SKLKGHSKRITGLAFSHALNVLVSSGADS---QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE 964 (1106)
Q Consensus 888 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d 964 (1106)
..+....... .+..-+|+..+.||.++ .+..||..+.+ +......... .-...+..-+|+..+.|
T Consensus 347 ~~l~~~r~~~--~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~---W~~~~~m~~~-----r~~~~~~~~~~~IYv~G-- 414 (480)
T PHA02790 347 PSLLKPRCNP--AVASINNVIYVIGGHSETDTTTEYLLPNHDQ---WQFGPSTYYP-----HYKSCALVFGRRLFLVG-- 414 (480)
T ss_pred CCCCCCCccc--EEEEECCEEEEecCcCCCCccEEEEeCCCCE---EEeCCCCCCc-----cccceEEEECCEEEEEC--
Confidence 2232111111 12233678888888654 46778876532 2221111100 01112233456655555
Q ss_pred CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCce
Q 001295 965 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLK 1020 (1106)
Q Consensus 965 ~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D-----g~i~vwd~~~~~ 1020 (1106)
|.+.+||.++.+-...-......... +++ .-+|+..+.|+.+ .+|.+||..+++
T Consensus 415 G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 415 RNAEFYCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CceEEecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 35678888766543221111101112 222 2266777777654 246666665543
No 440
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.88 E-value=3.8 Score=45.71 Aligned_cols=150 Identities=9% Similarity=0.088 Sum_probs=79.6
Q ss_pred cCeeEEEEecCCCEEEEEc-----------CCC-cEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE
Q 001295 895 KRITGLAFSHALNVLVSSG-----------ADS-QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 962 (1106)
Q Consensus 895 ~~V~~l~~s~d~~~l~s~s-----------~Dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 962 (1106)
.....|+|.++|+++++-. ..+ .|.+++-..+.-.......+..+. .....+++.++| ++++.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l----~~p~Gi~~~~~G-lyV~~ 88 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEEL----SMVTGLAVAVGG-VYVAT 88 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCC----CCccceeEecCC-EEEeC
Confidence 3456788999988877653 223 677776543221111111111221 245789999999 44443
Q ss_pred eCCeEEEE-ecCCc-----e---EeeecccCC--CCCCeeEEEECCCCCEEEEEEcC-------------------CeEE
Q 001295 963 HETQLAIF-ETTKL-----E---CVKQWVPRE--SSAPITHATFSCDSQLVYACFLD-------------------ATVC 1012 (1106)
Q Consensus 963 ~d~~v~i~-d~~~~-----~---~~~~~~~~~--h~~~v~~l~~s~d~~~l~t~s~D-------------------g~i~ 1012 (1106)
...|..| |.... + .+..+.... +......++|.|||.+.++-+.. |.|.
T Consensus 89 -~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~ 167 (367)
T TIGR02604 89 -PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLF 167 (367)
T ss_pred -CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEE
Confidence 4445544 44321 1 112232211 23457889999999876644421 3455
Q ss_pred EEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCC
Q 001295 1013 VFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG 1062 (1106)
Q Consensus 1013 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg 1062 (1106)
-++.++++.. .+. .+ ...+..++|++ +|+++++-..++
T Consensus 168 r~~pdg~~~e-~~a------~G----~rnp~Gl~~d~-~G~l~~tdn~~~ 205 (367)
T TIGR02604 168 RYNPDGGKLR-VVA------HG----FQNPYGHSVDS-WGDVFFCDNDDP 205 (367)
T ss_pred EEecCCCeEE-EEe------cC----cCCCccceECC-CCCEEEEccCCC
Confidence 5555554432 111 12 13345799998 688887655443
No 441
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.87 E-value=13 Score=43.44 Aligned_cols=181 Identities=11% Similarity=0.094 Sum_probs=94.7
Q ss_pred CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEe----cCcccCeeEEEEecCC
Q 001295 831 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL----KGHSKRITGLAFSHAL 906 (1106)
Q Consensus 831 g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l----~~h~~~V~~l~~s~d~ 906 (1106)
-.|+||++. |..+..+.-..+.+..+.|+. + .-|++...||+++||++.. +.+... ......|..+.|..+|
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~-~-eeLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSD-D-EELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccC-C-ceEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCc
Confidence 348888875 455555444445899999996 4 4566678999999999763 222221 1223345555555555
Q ss_pred CEEEEEcCCCcEE-EEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE--EeCC--eEEEEecCC--ceEee
Q 001295 907 NVLVSSGADSQLC-VWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHET--QLAIFETTK--LECVK 979 (1106)
Q Consensus 907 ~~l~s~s~Dg~i~-vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~--~~d~--~v~i~d~~~--~~~~~ 979 (1106)
-.+.+. +|.+. +-+++.... ..+.-..+.. ..-.+...-+++..... .-+. ...++-.+. .+...
T Consensus 140 Vavlt~--~g~v~~i~~~~~~~~---~~~~diP~~~---~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~ 211 (829)
T KOG2280|consen 140 VAVLTV--SGQVILINGVEEPKL---RKMPDIPYNE---LPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHA 211 (829)
T ss_pred eEEEec--CCcEEEEcCCCcchh---hhCCCCCCcc---CCCcceeEecCCCcceeEEeechhhhhcccceecccccccc
Confidence 333333 33333 333332111 0011101110 01123333233221111 1110 011111111 11111
Q ss_pred ecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295 980 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus 980 ~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
+. .-...+..+.+||+.++|+-=..+|.|.+-+++..+..+.+.
T Consensus 212 -~~--~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 212 -LS--WPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred -cC--CCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 11 113578899999999999999999999999999988888877
No 442
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.86 E-value=4.9 Score=39.55 Aligned_cols=154 Identities=14% Similarity=0.200 Sum_probs=85.0
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEcC--CCceeeeecCCCCCeeEEEEecCCCceEEEeeCCC------cEEEE---E
Q 001295 812 AVPCFALSKNDSYVMSASGGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS------SIQIY---N 880 (1106)
Q Consensus 812 ~v~~l~~s~~~~~l~~~sdg~i~vwd~~--~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg------~v~iw---d 880 (1106)
....++.+..+.++++++.++|.+|++. ..+.+.+|..- +.|..+.++. .|.+|++--++. .+|+| .
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhh
Confidence 3455555554555555668889999988 44556667644 7899999999 899999854332 55665 2
Q ss_pred ee--cceEE-EEecCc---------------------ccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccc--cceee
Q 001295 881 VR--VDEVK-SKLKGH---------------------SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ--KNRFL 934 (1106)
Q Consensus 881 ~~--~~~~~-~~l~~h---------------------~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~--~~~~~ 934 (1106)
.. ..+.+ ..+-|| +.++.+++-.|-..-|+.|+. +++.+|.+...... ....+
T Consensus 97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~~~~~~~l 175 (215)
T PF14761_consen 97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQSEKFSFL 175 (215)
T ss_pred hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEecccccEE
Confidence 21 11111 122232 234566666665444555554 46899987764331 11112
Q ss_pred cccCCCCCCCCCCceEEEcC-----CCcEEEEEeCCeEEEEecC
Q 001295 935 QIPTGRTPTAQSDTRVQFHQ-----DQIHFLVVHETQLAIFETT 973 (1106)
Q Consensus 935 ~~~~~~~~~~~~i~~~~~s~-----dg~~l~~~~d~~v~i~d~~ 973 (1106)
...... -+....|.| -+.|+|..++..++++.+.
T Consensus 176 DFe~~l-----~~~~~~~~p~~v~ic~~yiA~~s~~ev~Vlkl~ 214 (215)
T PF14761_consen 176 DFERSL-----IDHIDNFKPTQVAICEGYIAVMSDLEVLVLKLE 214 (215)
T ss_pred echhhh-----hheecCceEEEEEEEeeEEEEecCCEEEEEEEe
Confidence 211100 011112222 3567777777777777653
No 443
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.72 E-value=2 Score=51.91 Aligned_cols=99 Identities=14% Similarity=0.130 Sum_probs=65.3
Q ss_pred CeeEEEEecCCC--EEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEE
Q 001295 812 AVPCFALSKNDS--YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 889 (1106)
Q Consensus 812 ~v~~l~~s~~~~--~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~ 889 (1106)
...++.|.|.-. .++.-.|+.|++..+........--.-....++++|+| .|+.+++|...|++.-|... ++....
T Consensus 157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik~~ 234 (1405)
T KOG3630|consen 157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIKSE 234 (1405)
T ss_pred ccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEecc-ccceeeEecCCCeEEEeecc-cceeec
Confidence 345667776543 23333488888887753222211112345689999999 99999999999999988743 443333
Q ss_pred ecC----cccCeeEEEEecCCCEEEEE
Q 001295 890 LKG----HSKRITGLAFSHALNVLVSS 912 (1106)
Q Consensus 890 l~~----h~~~V~~l~~s~d~~~l~s~ 912 (1106)
+.+ ...+|.+|+|-....+|++-
T Consensus 235 ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 235 IPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred ccCCCcCCCcceeEEEEecceeEEEEe
Confidence 322 24679999998777777653
No 444
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.59 E-value=4.6 Score=46.85 Aligned_cols=59 Identities=15% Similarity=0.287 Sum_probs=36.5
Q ss_pred CCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeee-eeeccccCCeeEEEEcCCCC
Q 001295 409 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH-LEIDAHVGGVNDIAFSHPNK 470 (1106)
Q Consensus 409 ~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~-~~l~~h~~~V~~~~~s~d~~ 470 (1106)
-.|. .+..+.||.+.. |++...+|+++||++.... +... .........|..+.|..+|-
T Consensus 81 w~~~-~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 81 WKHG-ELIGMGWSDDEE-LICVQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred hcCC-CeeeecccCCce-EEEEeccceEEEeecchhh-hcccccccccccCceeEEEEecCce
Confidence 3444 788999997665 5556799999999987532 2211 01122334566666666654
No 445
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.35 E-value=22 Score=39.75 Aligned_cols=151 Identities=9% Similarity=-0.019 Sum_probs=84.2
Q ss_pred eeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCce
Q 001295 897 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE 976 (1106)
Q Consensus 897 V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~ 976 (1106)
...+..++||.+++.+..-..++-||-.. . ....+.... ...+..+.|.+++..++++..|.+.. ....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~--~-~W~~~~~~~-----~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~ 311 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQ--P-YWQPHNRAS-----ARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGL 311 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCC--c-ceEEecCCC-----ccceeeeeEcCCCCEEEEeCCceEEE-ecCCCC
Confidence 44556778887777665444334444322 0 011122221 13678899999999998887777644 333332
Q ss_pred -----EeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCC
Q 001295 977 -----CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1051 (1106)
Q Consensus 977 -----~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d 1051 (1106)
.........-...++++.|.+++..+++| .+|.+.... +.|+.-.........+ ...+ .+.|.+
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~-----~~ly--~v~f~~-- 380 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIA-----ANLY--SVKFFD-- 380 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCC-----ccee--EEEEcC--
Confidence 11221111113458999999888877665 688777654 5555543332111111 2255 788775
Q ss_pred CCEEEEEeCCCcEEEE
Q 001295 1052 PNEFALGLSDGGVHVF 1067 (1106)
Q Consensus 1052 ~~~l~t~~~Dg~v~vW 1067 (1106)
.+.....+.+|.|.-|
T Consensus 381 ~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 381 DKKGFVLGNDGVLLRY 396 (398)
T ss_pred CCceEEEeCCcEEEEe
Confidence 3455555668887655
No 446
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.20 E-value=23 Score=39.65 Aligned_cols=158 Identities=8% Similarity=0.074 Sum_probs=85.7
Q ss_pred CCCCceEEEEecCCCcEEEEeCCCCc-----eeEEEeccCCCeEEEeccc--cCCceEEEEEecCCeEEEEeCCCCCcee
Q 001295 467 HPNKQLCVITCGDDKTIKVWDATNGA-----KQYIFEGHEAPVYSVCPHH--KENIQFIFSTALDGKIKAWLYDNLGSRV 539 (1106)
Q Consensus 467 ~d~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~h~~~v~~~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 539 (1106)
++++. .++.|+..|.++|++...+. .+-+. .-..+|..+..-. .......++.-.-..+.+|.+.......
T Consensus 34 ~~~~d-~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~ 111 (418)
T PF14727_consen 34 PSGSD-KIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTV 111 (418)
T ss_pred CCCcc-EEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCc
Confidence 34444 79999999999999986433 11121 2457787776321 1112233344556677777663221110
Q ss_pred EeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcC----C-CCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcC
Q 001295 540 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT----T-KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASP 614 (1106)
Q Consensus 540 ~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~----~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~ 614 (1106)
.++.. ..+. .++..+-......+++.| . ..++.+-+.||.+.+|+-+.......+... --.-
T Consensus 112 ---~~g~~-~~L~------~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~---llPg 178 (418)
T PF14727_consen 112 ---EHGNQ-YQLE------LIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDF---LLPG 178 (418)
T ss_pred ---ccCcE-EEEE------EEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCC---CCCc
Confidence 00000 0000 000010011111122222 1 246777899999999998765544444432 1234
Q ss_pred eEEEccCCCEEEEEeCCCcEEEEEc
Q 001295 615 RIRFNKDGCLLAVSTNDNGIKILAT 639 (1106)
Q Consensus 615 ~v~~s~~~~~l~~~~~dg~i~iwd~ 639 (1106)
.+.|.+....+++++.+..+.-|..
T Consensus 179 Pl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 179 PLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred CeEEeecCCEEEEecCceeEEEecH
Confidence 5899999899999998888877754
No 447
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.92 E-value=1.8 Score=52.27 Aligned_cols=146 Identities=13% Similarity=0.103 Sum_probs=93.6
Q ss_pred CCCeeEEEEecCCCEEEEEe--C-CeEEEEEcCCCceee-----eecCC------CCCeeEEEEecCCCceEEEeeCCCc
Q 001295 810 EEAVPCFALSKNDSYVMSAS--G-GKISLFNMMTFKTMA-----TFMPP------PPAATFLAFHPQDNNIIAIGMDDSS 875 (1106)
Q Consensus 810 ~~~v~~l~~s~~~~~l~~~s--d-g~i~vwd~~~~~~~~-----~~~~~------~~~v~~l~~s~~d~~~la~g~~dg~ 875 (1106)
...+..+.+.+|+...++.. + ..|..||+.+...-. -+..| ..-..++.|.|.-....|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 44566777788877666554 3 358999987543221 11111 2335677788743445677788999
Q ss_pred EEEEEeecc-eEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcC
Q 001295 876 IQIYNVRVD-EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 954 (1106)
Q Consensus 876 v~iwd~~~~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 954 (1106)
|++..+.-. .....+ .....+++++|+|-|+.++.|-..|++.-|...-..+ ..+..-.......|.+++|-.
T Consensus 180 l~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik-----~~ip~Pp~~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK-----SEIPEPPVEENYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeeccccee-----ecccCCCcCCCcceeEEEEec
Confidence 998876532 222222 2456789999999999999999999999887554211 111111111135788999988
Q ss_pred CCcEEEE
Q 001295 955 DQIHFLV 961 (1106)
Q Consensus 955 dg~~l~~ 961 (1106)
.-.++++
T Consensus 254 t~eflvv 260 (1405)
T KOG3630|consen 254 TQEFLVV 260 (1405)
T ss_pred ceeEEEE
Confidence 8888877
No 448
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.89 E-value=14 Score=36.50 Aligned_cols=149 Identities=11% Similarity=0.127 Sum_probs=86.5
Q ss_pred ceEEEeeCCCcEEEEEee--cceEEEEecCcccCeeEEEEecCCCEEEEEcCC------CcEEEE-eCCCcccccceeec
Q 001295 865 NIIAIGMDDSSIQIYNVR--VDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVW-SSDGWEKQKNRFLQ 935 (1106)
Q Consensus 865 ~~la~g~~dg~v~iwd~~--~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------g~i~vw-d~~~~~~~~~~~~~ 935 (1106)
..|..+...+.|.+|++. ..+.+.+|..- +.|..+.++..|++|++-=.+ ..+|+| |.+...........
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 344444667789999988 34566666644 789999999999999986332 256665 22211000000000
Q ss_pred ccCCC------------------CCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceE-ee-----ecc---cCCC-C
Q 001295 936 IPTGR------------------TPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC-VK-----QWV---PRES-S 987 (1106)
Q Consensus 936 ~~~~~------------------~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~-~~-----~~~---~~~h-~ 987 (1106)
...|| .+....+.+++..|-..-|+++.++.+.+|.+..... .. .+. ...| +
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~ 187 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN 187 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecC
Confidence 00010 1122466888888887778888889999998765443 11 110 0011 2
Q ss_pred CCeeEEEECCCCCEEEEEEcCCeEEEEEcC
Q 001295 988 APITHATFSCDSQLVYACFLDATVCVFSAA 1017 (1106)
Q Consensus 988 ~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~ 1017 (1106)
-.+..++| .+.|+|..+ |-.++++.+.
T Consensus 188 ~~p~~v~i--c~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 188 FKPTQVAI--CEGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred ceEEEEEE--EeeEEEEec-CCEEEEEEEe
Confidence 23455565 466888765 6677777653
No 449
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=91.87 E-value=2.2 Score=48.67 Aligned_cols=78 Identities=15% Similarity=0.324 Sum_probs=53.7
Q ss_pred CcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC
Q 001295 412 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 491 (1106)
Q Consensus 412 ~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 491 (1106)
...++++.-+|.|+-++.+..||+|++|+.......+ +.....+-..+.|...| +++...|+.+--|. ++|
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk----i~~~~~p~~nlv~tnhg----l~~~tsdrr~la~~-~dg 84 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK----ICEEAKPKENLVFTNHG----LVTATSDRRALAWK-EDG 84 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhh----hhhhcCCccceeeeccc----eEEEeccchhheee-ccC
Confidence 4467888888999999999999999999987643321 22233455566776554 56666788888886 566
Q ss_pred ceeEEEe
Q 001295 492 AKQYIFE 498 (1106)
Q Consensus 492 ~~~~~~~ 498 (1106)
-..+.|.
T Consensus 85 vvqqqfd 91 (1636)
T KOG3616|consen 85 VVQQQFD 91 (1636)
T ss_pred cchhhcc
Confidence 5544443
No 450
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.78 E-value=0.39 Score=55.90 Aligned_cols=163 Identities=15% Similarity=0.170 Sum_probs=93.5
Q ss_pred CCCCcEEEEEe----cCCCeEEEEEeccCcEEEEecC--CcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc
Q 001295 349 QGSSPMSMDFH----PVQQTLLLVGTNVGDIGLWEVG--SRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 422 (1106)
Q Consensus 349 h~~~v~~~~~s----p~g~~llatg~~dg~i~iwd~~--~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 422 (1106)
-.+.|-.++|- |.++. + -|...|||++ .|+......+++ ...-...+.-+.|.|
T Consensus 131 f~G~v~dl~fah~~~pk~~~-~-----vg~lfVy~vd~l~G~iq~~l~v~~--------------~~p~gs~~~~V~wcp 190 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGRR-L-----VGELFVYDVDVLQGEIQPQLEVTP--------------ITPYGSDPQLVSWCP 190 (1283)
T ss_pred CCCCcccccccccCChHHHH-H-----hhhhheeehHhhccccccceEEee--------------cCcCCCCcceeeecc
Confidence 45667777774 33331 2 2678899876 344433222222 222223344555555
Q ss_pred ---CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEE-----------cCCCCceEEEEecCCCcEEEEeC
Q 001295 423 ---DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF-----------SHPNKQLCVITCGDDKTIKVWDA 488 (1106)
Q Consensus 423 ---dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~-----------s~d~~~~~l~s~~~d~~i~iwd~ 488 (1106)
+.-++..+-.+++|++..+++... . .+.+|...+..++| ||||+ .|+....||.++.|.+
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~--~--l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALR--S--LFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQI 264 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHH--H--HHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceeee
Confidence 677787788889999887776443 1 35678888777665 78888 7888888888887765
Q ss_pred C-----CCceeEEEeccCCCeEEEeccccCC---------ceEEEEEec-CCeEEEEeCCCCCce
Q 001295 489 T-----NGAKQYIFEGHEAPVYSVCPHHKEN---------IQFIFSTAL-DGKIKAWLYDNLGSR 538 (1106)
Q Consensus 489 ~-----~~~~~~~~~~h~~~v~~~~~~~~~~---------~~~l~s~~~-dg~i~iwd~~~~~~~ 538 (1106)
. ..+|+...+.|++.-. +||....+ -.++++++. ...+++|......+.
T Consensus 265 yi~g~~~~rclhewkphd~~p~-vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 265 YITGKIVHRCLHEWKPHDKHPR-VCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeccccHhhhhccCCCCCCCc-eeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 3 2345556666663221 12221111 123444443 556888865544443
No 451
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.68 E-value=10 Score=41.91 Aligned_cols=157 Identities=15% Similarity=0.119 Sum_probs=91.5
Q ss_pred eEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccC------CceEEEEEecCCeEEEEeCCC
Q 001295 461 NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE------NIQFIFSTALDGKIKAWLYDN 534 (1106)
Q Consensus 461 ~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~------~~~~l~s~~~dg~i~iwd~~~ 534 (1106)
.-+-...++..+++..|+....++--|++.|+.+-.+.-|...| +.+.|.. +.+.|+ |-.+..|.-.|.+.
T Consensus 470 ~K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~ 546 (776)
T COG5167 470 EKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRA 546 (776)
T ss_pred hhceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEE-eecccceEEecccc
Confidence 33344444555567778888889999999999999998777653 3443332 122344 44444454445554
Q ss_pred CCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcC
Q 001295 535 LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASP 614 (1106)
Q Consensus 535 ~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~ 614 (1106)
.+..........-.+.-.|+ +. ......++++++..|.|++||.-..+....+.+-+. .|.
T Consensus 547 ~gNKi~v~esKdY~tKn~Fs----------------s~-~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~--aIk 607 (776)
T COG5167 547 RGNKIKVVESKDYKTKNKFS----------------SG-MTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGD--AIK 607 (776)
T ss_pred cCCceeeeeehhcccccccc----------------cc-ccccCceEEEecCCCceeeehhhcchhhhcCccccc--cee
Confidence 33211111111111111111 11 112234799999999999999655444444444433 688
Q ss_pred eEEEccCCCEEEEEeCCCcEEEEEcc
Q 001295 615 RIRFNKDGCLLAVSTNDNGIKILATS 640 (1106)
Q Consensus 615 ~v~~s~~~~~l~~~~~dg~i~iwd~~ 640 (1106)
.+..+.+|+++++.+. ..+.+-|+.
T Consensus 608 ~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 608 HIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred eeEeecCCcEEEEeec-ceEEEEecc
Confidence 8999999999887776 467777764
No 452
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=91.50 E-value=17 Score=38.79 Aligned_cols=189 Identities=11% Similarity=0.074 Sum_probs=101.7
Q ss_pred eeEEEEecCCCEEEE--Ee-C----------CeEEEEEcCCCceeeeecCC------CCCeeEEEEecCCC----ceEEE
Q 001295 813 VPCFALSKNDSYVMS--AS-G----------GKISLFNMMTFKTMATFMPP------PPAATFLAFHPQDN----NIIAI 869 (1106)
Q Consensus 813 v~~l~~s~~~~~l~~--~s-d----------g~i~vwd~~~~~~~~~~~~~------~~~v~~l~~s~~d~----~~la~ 869 (1106)
|..+...+++++-+. |. + -+|.+||+.+.+.++++.-. ......+.+...++ .++..
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 455666666664442 22 1 26889999999988775422 34567777776322 23333
Q ss_pred e-eCCCcEEEEEeecceEEEEecCcc-------------------cCeeEEEEec---CCCEEEEEcCCCcEEEEeCCCc
Q 001295 870 G-MDDSSIQIYNVRVDEVKSKLKGHS-------------------KRITGLAFSH---ALNVLVSSGADSQLCVWSSDGW 926 (1106)
Q Consensus 870 g-~~dg~v~iwd~~~~~~~~~l~~h~-------------------~~V~~l~~s~---d~~~l~s~s~Dg~i~vwd~~~~ 926 (1106)
+ ...+.|.|||+.+++..+.+..+. +.+.+++.+| |+++|.-..-.+ -++|.+.+.
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~ 161 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS 161 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH
Confidence 3 344689999999887665554322 2355566654 566666554433 244544432
Q ss_pred cccccee---------ecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCce---EeeecccCCC-CCCeeE
Q 001295 927 EKQKNRF---------LQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE---CVKQWVPRES-SAPITH 992 (1106)
Q Consensus 927 ~~~~~~~---------~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~---~~~~~~~~~h-~~~v~~ 992 (1106)
-...... .+.. |... .....++++++|..+.+ ...+.|..|+..+.- ....+..... -..+..
T Consensus 162 ~L~~~~~~~~~~~~~~v~~l-G~k~--~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~ 238 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDL-GDKG--SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDG 238 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEE-EE-----SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEE
T ss_pred HhhCccccccccccccceec-cccC--CCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccce
Confidence 1111000 0010 1100 13467899999998888 588899999988621 1122222222 346788
Q ss_pred EEECC--CCCEEEEE
Q 001295 993 ATFSC--DSQLVYAC 1005 (1106)
Q Consensus 993 l~~s~--d~~~l~t~ 1005 (1106)
+.+.+ +|.+.+..
T Consensus 239 ~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 239 LKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEE-T--TS-EEEEE
T ss_pred eeeccccCceEEEEE
Confidence 88888 66655544
No 453
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=91.32 E-value=13 Score=43.43 Aligned_cols=131 Identities=12% Similarity=0.189 Sum_probs=77.8
Q ss_pred CCceEEEcCCCcEEEE-EeCC-----eEEEEecCCceEeeeccc-CCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001295 946 SDTRVQFHQDQIHFLV-VHET-----QLAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus 946 ~i~~~~~s~dg~~l~~-~~d~-----~v~i~d~~~~~~~~~~~~-~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
.-..+.|-|.|..+++ +.|| .|.++.-+..+. ..+.. -+-...+..++|.-....++.+ ....|++|-..+
T Consensus 248 ~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrH-Gef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkN 325 (1243)
T COG5290 248 MEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRH-GEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKN 325 (1243)
T ss_pred chhccccccCCceeeeeccCCCCCcceEEEEccCCccc-CCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccc
Confidence 4467899999999998 5444 366665443221 11110 0224456777787666666644 567899998776
Q ss_pred ceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCCCccCCCCCCCCCCCCC
Q 001295 1019 LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSS 1089 (1106)
Q Consensus 1019 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~~~~~~~~~~~~~~~~~ 1089 (1106)
..-.-... .+.|. +. -+.|+|...+.|...+ .+.|..-..+....+-....|+|+|+..-
T Consensus 326 yhWYLK~e--~~ip~------~s--~vkwhpe~~nTl~f~d-~~~I~~V~f~~k~~~~~s~~p~d~g~~~V 385 (1243)
T COG5290 326 YHWYLKVE--RQIPG------IS--YVKWHPEEKNTLLFRD-GERILRVFFSEKKTHHGSEYPFDNGTSYV 385 (1243)
T ss_pred eEEEEEEe--ecCCC------cc--eeeeccccCcEEEEec-CCeEEEEEeehhhhcCCcccCccCCceEE
Confidence 65433222 23332 33 5889997666666543 34444444444444456678899987643
No 454
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.18 E-value=26 Score=38.26 Aligned_cols=163 Identities=12% Similarity=0.119 Sum_probs=90.8
Q ss_pred CCCeeEEEEecCCCceEEEeeCCCc------EEEEEeec--c--eEE-----EEecCccc--------CeeEEEEecCCC
Q 001295 851 PPAATFLAFHPQDNNIIAIGMDDSS------IQIYNVRV--D--EVK-----SKLKGHSK--------RITGLAFSHALN 907 (1106)
Q Consensus 851 ~~~v~~l~~s~~d~~~la~g~~dg~------v~iwd~~~--~--~~~-----~~l~~h~~--------~V~~l~~s~d~~ 907 (1106)
-+.+..+.+.+.++.+++ .+++|. ++.+++.. + ..+ ..+..-.+ -.-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~~~a-vSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYA-VSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEE-EECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 345788888863555555 455666 65555543 1 001 11222222 234788888888
Q ss_pred EEEEEcCC------CcEEEEeCCCcccccceeecccC---------CCCCCCCCCceEEEcCCCcEEEEE------eCC-
Q 001295 908 VLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPT---------GRTPTAQSDTRVQFHQDQIHFLVV------HET- 965 (1106)
Q Consensus 908 ~l~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~---------~~~~~~~~i~~~~~s~dg~~l~~~------~d~- 965 (1106)
++++.=.+ ..|+.++.. ++..... .++. .....+....+++++|||+.|.++ .|+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~--~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~ 174 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRF--PVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP 174 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceE--ccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc
Confidence 88887777 778777766 4432211 1111 112234677899999999955442 222
Q ss_pred -e-------EE--EEecCC-ceEeeeccc--CC-----CCCCeeEEEECCCCCEEEEEE-----cCCeEEEEEcC
Q 001295 966 -Q-------LA--IFETTK-LECVKQWVP--RE-----SSAPITHATFSCDSQLVYACF-----LDATVCVFSAA 1017 (1106)
Q Consensus 966 -~-------v~--i~d~~~-~~~~~~~~~--~~-----h~~~v~~l~~s~d~~~l~t~s-----~Dg~i~vwd~~ 1017 (1106)
. ++ .||..+ ++....+.. .. ....|+.+.+-+++++|+.-= ....++|+.+.
T Consensus 175 ~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 175 RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 1 44 455554 323333322 11 356889999999999877431 23455555443
No 455
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=91.17 E-value=48 Score=41.21 Aligned_cols=174 Identities=11% Similarity=0.143 Sum_probs=104.9
Q ss_pred CCCCeeEEEEe---c----CCCEEEEEeCCeEEEEEcCCC---------------ceeeeec---CCCCCeeEEEEecCC
Q 001295 809 PEEAVPCFALS---K----NDSYVMSASGGKISLFNMMTF---------------KTMATFM---PPPPAATFLAFHPQD 863 (1106)
Q Consensus 809 ~~~~v~~l~~s---~----~~~~l~~~sdg~i~vwd~~~~---------------~~~~~~~---~~~~~v~~l~~s~~d 863 (1106)
...+|..|+|. . ..++|++-....+.|+...-. ..+..+. ....+...++|+|.+
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 57788888888 2 224777777777888772211 1112222 123356678888877
Q ss_pred CceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCC
Q 001295 864 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT 943 (1106)
Q Consensus 864 ~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 943 (1106)
.+.||+.+..|...||++..... .+.. . +-++....|.| +.|....
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~-----~~~~-~----------~~~~~~~~gsi-~~d~~e~----------------- 203 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPK-----RKSS-N----------LRLSRNISGSI-IFDPEEL----------------- 203 (765)
T ss_pred cceEEEEeccCcEEEEEeccccc-----cCCc-c----------eeeccCCCccc-cCCCccc-----------------
Confidence 77888888888888888721110 0011 1 11112222333 2232220
Q ss_pred CCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCC--CCEEEEEEcCCeEEEEEcCCc
Q 001295 944 AQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCD--SQLVYACFLDATVCVFSAANL 1019 (1106)
Q Consensus 944 ~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d--~~~l~t~s~Dg~i~vwd~~~~ 1019 (1106)
..-..+.|.++-..|+++....+.++|+++......+........|..+.-+++ +..++.. ...|...++.+.
T Consensus 204 -s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~ 278 (765)
T PF10214_consen 204 -SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS 278 (765)
T ss_pred -CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence 133578899998999999999999999998766442332344678999999887 3333332 367888888763
No 456
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.82 E-value=0.032 Score=59.97 Aligned_cols=146 Identities=18% Similarity=0.190 Sum_probs=98.7
Q ss_pred EEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEE
Q 001295 747 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM 826 (1106)
Q Consensus 747 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~ 826 (1106)
....+-+.+..++.++.+..+..||-..... .. .........++|+.++..++
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq~~----------------------le-----~n~tg~aldm~wDkegdvla 90 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQVI----------------------LE-----LNPTGKALDMAWDKEGDVLA 90 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhccee----------------------cc-----cCCchhHhhhhhccccchhh
Confidence 3455666666688888888887776432111 11 11344455677777777666
Q ss_pred EEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEec
Q 001295 827 SAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH 904 (1106)
Q Consensus 827 ~~s--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~ 904 (1106)
... .+.+.+||+.+......-.+....-.-+.|++ +...++.|...|.+.|++..+.+.+...-.|..+++++++.+
T Consensus 91 vlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l 169 (615)
T KOG2247|consen 91 VLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL 169 (615)
T ss_pred hhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence 554 68999999986543322222222223378999 888999999999999999888776666555999999999998
Q ss_pred CCCEEEEEcCCCcEEEE
Q 001295 905 ALNVLVSSGADSQLCVW 921 (1106)
Q Consensus 905 d~~~l~s~s~Dg~i~vw 921 (1106)
.+ +.+.++.|..+.+-
T Consensus 170 Ed-~vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 170 ED-YVILCDCDNTLSVT 185 (615)
T ss_pred cc-eeeecCcHHHHHHh
Confidence 75 56667777655443
No 457
>PHA02790 Kelch-like protein; Provisional
Probab=90.52 E-value=15 Score=42.61 Aligned_cols=185 Identities=7% Similarity=-0.044 Sum_probs=91.4
Q ss_pred CCceEEEeeCCC-----cEEEEEeecceEE--EEecCcccCeeEEEEecCCCEEEEEcCCC--cEEEEeCCCccccccee
Q 001295 863 DNNIIAIGMDDS-----SIQIYNVRVDEVK--SKLKGHSKRITGLAFSHALNVLVSSGADS--QLCVWSSDGWEKQKNRF 933 (1106)
Q Consensus 863 d~~~la~g~~dg-----~v~iwd~~~~~~~--~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg--~i~vwd~~~~~~~~~~~ 933 (1106)
++.++++|+.++ .+..||..+++-. ..+....... +++ .-++...+.||.++ ++..||..+++ +..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~---W~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAA---WVN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCe---EEE
Confidence 567777787653 4667887765422 2222111111 222 34677778887643 57778765432 111
Q ss_pred ecccCCCCCCCCCCceEEEcCCCcEEEEE-eC---CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCC
Q 001295 934 LQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE---TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA 1009 (1106)
Q Consensus 934 ~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d---~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg 1009 (1106)
+..... + .-...+..-+|+..+.| .+ ..+..||..+.+-...-......... ++ ..-+|+..+.| |
T Consensus 346 ~~~l~~--~---r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~G---G 415 (480)
T PHA02790 346 MPSLLK--P---RCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVG---R 415 (480)
T ss_pred CCCCCC--C---CcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEEC---C
Confidence 111110 0 11122233456666663 32 35778888766543321111111111 22 23356666665 4
Q ss_pred eEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCC-----CcEEEEeecCCC
Q 001295 1010 TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1073 (1106)
Q Consensus 1010 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~D-----g~v~vW~~~~~~ 1073 (1106)
.+.+||..+.+-...-. ++..+... .++.. ++++.+.||.+ .++..+|+.+.+
T Consensus 416 ~~e~ydp~~~~W~~~~~----m~~~r~~~-----~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 416 NAEFYCESSNTWTLIDD----PIYPRDNP-----ELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ceEEecCCCCcEeEcCC----CCCCcccc-----EEEEE--CCEEEEECCcCCCcccceEEEEECCCCe
Confidence 57788887765442211 22211111 23333 57888888865 357788887755
No 458
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.42 E-value=1.1 Score=30.97 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=26.3
Q ss_pred cCeEEEEEccC-C--CEEEEEeCCCeEEEEEccCC
Q 001295 413 VSVNRVIWSPD-G--SLFGVAYSRHIVQIYSYHGG 444 (1106)
Q Consensus 413 ~~V~~l~~spd-g--~~las~~~d~~v~iwd~~~~ 444 (1106)
+.|.++.|||+ + .+|+.+-..+.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 46899999984 4 58888877899999999853
No 459
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.24 E-value=0.78 Score=31.74 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=26.4
Q ss_pred CCcEEEEEecCCC--eEEEEEeccCcEEEEecCC
Q 001295 351 SSPMSMDFHPVQQ--TLLLVGTNVGDIGLWEVGS 382 (1106)
Q Consensus 351 ~~v~~~~~sp~g~--~llatg~~dg~i~iwd~~~ 382 (1106)
+.|.+++|||... .||+....-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3689999997544 4788888889999999985
No 460
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.14 E-value=6.6 Score=47.41 Aligned_cols=84 Identities=11% Similarity=0.175 Sum_probs=54.6
Q ss_pred CCCeeEEEECCCCCEEEEEEcCCeEEEEEcC----------Cc--eeEEe-eCCCcccCCCCCCCCccceEEEEeCC--C
Q 001295 987 SAPITHATFSCDSQLVYACFLDATVCVFSAA----------NL--KLRCR-INPSAYLPAGVSSSNVHPLVIAAHPQ--E 1051 (1106)
Q Consensus 987 ~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~----------~~--~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--d 1051 (1106)
.-.|..|.++|+|++||..+..|. .|-.+. .| ...|+ +.....+... +.......+.|+|. +
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~--~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTS--NSSLEIKQVRWHPWSES 160 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccC--CCCceEEEEEEcCCCCC
Confidence 346889999999999998887654 443432 11 22333 2222222222 22244458999985 2
Q ss_pred CCEEEEEeCCCcEEEEeecCCC
Q 001295 1052 PNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus 1052 ~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
+..|+.-.+|++++++|+...+
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCeEEEEecCCEEEEEecCCCC
Confidence 5788888999999999998766
No 461
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=90.05 E-value=36 Score=38.04 Aligned_cols=200 Identities=10% Similarity=-0.059 Sum_probs=103.6
Q ss_pred EecCCCEEEEEeCCeEEEEEcCCCceeeeecCCC--CCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcc-
Q 001295 818 LSKNDSYVMSASGGKISLFNMMTFKTMATFMPPP--PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS- 894 (1106)
Q Consensus 818 ~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~--~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~- 894 (1106)
..-+++.++...+|.|.-+|..++..+....... ..+..-.+.. +|+ |..++.+|.++.+|..+|+.+-......
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence 3446666666568888888888877654333221 2233333333 565 6668889989999988898887766555
Q ss_pred cCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEe--CCeEEEEec
Q 001295 895 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--ETQLAIFET 972 (1106)
Q Consensus 895 ~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~--d~~v~i~d~ 972 (1106)
-.+..-..-.++ .+..++.|+.+.-.+-.+++..-...... . .. ..+..-....++..++... ++.+.-.|.
T Consensus 143 ~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~--~-~~--~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~ 216 (370)
T COG1520 143 PYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPA--P-LS--LSIYGSPAIASGTVYVGSDGYDGILYALNA 216 (370)
T ss_pred eEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCC--c-cc--cccccCceeecceEEEecCCCcceEEEEEc
Confidence 112222222233 23333355666666666554322111110 0 00 0111111134444444443 556777788
Q ss_pred CCceEeeeccc---CCCCCCeeEEEECC-----CCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295 973 TKLECVKQWVP---RESSAPITHATFSC-----DSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus 973 ~~~~~~~~~~~---~~h~~~v~~l~~s~-----d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
.+|...-.... .+.. .+....... .+.-+..++.++.+...|..+|+.+-+..
T Consensus 217 ~~G~~~w~~~~~~~~~~~-~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~ 277 (370)
T COG1520 217 EDGTLKWSQKVSQTIGRT-AISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFP 277 (370)
T ss_pred cCCcEeeeeeeecccCcc-cccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEe
Confidence 77776555211 0111 110011111 11223566778888889999999887776
No 462
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.80 E-value=12 Score=46.68 Aligned_cols=146 Identities=15% Similarity=0.215 Sum_probs=92.5
Q ss_pred eCCCcEEEEEeecceEEEEecCcccCeeEEEEe--------cCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCC--
Q 001295 871 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS--------HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR-- 940 (1106)
Q Consensus 871 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s--------~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~-- 940 (1106)
+-|..+.+|+..++.....+.+-+..|..|..- |.=++|...+.--.|.++-+.-.+.... ......+
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~--~~~f~~~~~ 173 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGE--LSIFNTSFK 173 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCc--cccccccee
Confidence 357889999999988888888888888877653 2323443333344466665443221111 0111110
Q ss_pred -CCCCCCCceEEEcCCCcEEEEEeCCeEE--EEecCCc----eEeee--------------ccc-CCCCCCeeEEEECCC
Q 001295 941 -TPTAQSDTRVQFHQDQIHFLVVHETQLA--IFETTKL----ECVKQ--------------WVP-RESSAPITHATFSCD 998 (1106)
Q Consensus 941 -~~~~~~i~~~~~s~dg~~l~~~~d~~v~--i~d~~~~----~~~~~--------------~~~-~~h~~~v~~l~~s~d 998 (1106)
......|.++....+|+.+.+|.||.|+ +|....+ +|-+. +.. ..+.++|..|++...
T Consensus 174 i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred eecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 0112467889999999999999888544 2222221 11110 111 256789999999988
Q ss_pred CCEEEEEEcCCeEEEEEcCC
Q 001295 999 SQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus 999 ~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
...|.+-++-|+|.+||+..
T Consensus 254 R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeeeccCceEEEEEccC
Confidence 88899999999999999976
No 463
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.76 E-value=1.2 Score=30.40 Aligned_cols=33 Identities=12% Similarity=0.220 Sum_probs=24.2
Q ss_pred eccCCCCcEEEEEecCCCeEEEEEecc--CcEEEE
Q 001295 346 TLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLW 378 (1106)
Q Consensus 346 ~~~h~~~v~~~~~sp~g~~llatg~~d--g~i~iw 378 (1106)
.......-.+.+|||||++|+.+...+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344556778999999999988888777 776666
No 464
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.43 E-value=41 Score=37.69 Aligned_cols=152 Identities=10% Similarity=0.059 Sum_probs=84.8
Q ss_pred eeEEEEecCCCceEEEeeCCCcEEEEEeecceE--EEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccc
Q 001295 854 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV--KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 931 (1106)
Q Consensus 854 v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~ 931 (1106)
...+..++ ++.++++|.....++-||- |.. ...-......++++.|.+++.+++.+ .+|.+ +|..+.++....
T Consensus 241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEED 315 (398)
T ss_pred eeeEEEcC-CCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccc
Confidence 34456667 7777777654333333442 221 11112234568999999998877755 55654 344444321100
Q ss_pred -eeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecc-cCCCCCCeeEEEECCCCCEEEEEEcCC
Q 001295 932 -RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV-PRESSAPITHATFSCDSQLVYACFLDA 1009 (1106)
Q Consensus 932 -~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~-~~~h~~~v~~l~~s~d~~~l~t~s~Dg 1009 (1106)
........ .....+..+.|.+++..++++..|.+..-. ..++.-.... ...-....+.+.|.++++.+++| .+|
T Consensus 316 ~~f~~~~~~--~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G 391 (398)
T PLN00033 316 FDFEEADIK--SRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDG 391 (398)
T ss_pred cceeecccC--CCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCc
Confidence 01111100 011257889999999999999888776654 3333322211 11224578899998887777766 688
Q ss_pred eEEEE
Q 001295 1010 TVCVF 1014 (1106)
Q Consensus 1010 ~i~vw 1014 (1106)
.|.-|
T Consensus 392 ~il~~ 396 (398)
T PLN00033 392 VLLRY 396 (398)
T ss_pred EEEEe
Confidence 77655
No 465
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.17 E-value=6.2 Score=49.71 Aligned_cols=69 Identities=12% Similarity=0.140 Sum_probs=44.8
Q ss_pred CCceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCcee
Q 001295 946 SDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1021 (1106)
Q Consensus 946 ~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~ 1021 (1106)
.+.+..+......+.....+.+.+|+.........+...++.. +.++..++++-.||.+..||...+..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 200 ESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQLE-------SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccccC-------ccCCceEEEEEecCCEEeeecCCCce
Confidence 3444444445555555555666666655444444443322222 88999999999999999999999866
No 466
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=89.04 E-value=53 Score=42.58 Aligned_cols=149 Identities=13% Similarity=0.172 Sum_probs=87.7
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 428 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 428 (1106)
|...++.|.-+++|++ += -.|+.++.||..+. .|... -..-...++.+.-.-||+..|
T Consensus 361 H~A~LTgv~~~~~ge~-lR--lHd~~LY~~d~~~~---------~Wk~~----------~~~~d~~~S~Ls~qgdG~lYA 418 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQ-LR--LHDDRLYQFDPNTA---------RWKPP----------PDKSDTPFSSLSRQGDGKLYA 418 (1774)
T ss_pred HHHHhhccccCCCCCe-EE--eecCceeeeccccc---------eecCC----------CCcccchhhhhcccCCCceEe
Confidence 5667778888888875 32 35788888887654 23210 012233555566556676665
Q ss_pred EEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC------ceeE--EEecc
Q 001295 429 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG------AKQY--IFEGH 500 (1106)
Q Consensus 429 s~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~------~~~~--~~~~h 500 (1106)
.++. .|-|+..+.... ..-..|.+...+++|.- .+.++-....+.+|++... +... .+.+-
T Consensus 419 ---k~~~-~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG 487 (1774)
T PF11725_consen 419 ---KDDD-TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG 487 (1774)
T ss_pred ---cCCC-ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC
Confidence 2221 134555443211 12345777888899984 4777777778899998753 1112 23333
Q ss_pred CCCeEEEeccccCCceEEEEEecCCeEEEEeCCC
Q 001295 501 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 534 (1106)
Q Consensus 501 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 534 (1106)
.....+|.++ . ..|+.+..+|.++.=++..
T Consensus 488 ~a~A~~VgLs--~--drLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 488 KAQAQSVGLS--N--DRLFVADSEGKLYSADLPA 517 (1774)
T ss_pred chhhhheeec--C--CeEEEEeCCCCEEeccccc
Confidence 3345555543 3 2688889999888877764
No 467
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=88.52 E-value=43 Score=36.81 Aligned_cols=148 Identities=11% Similarity=0.154 Sum_probs=84.5
Q ss_pred CeEEEEEcC--CCceeeeecC-------CCCCeeEEEE--ecCCCc-eEEEeeCCCcEEEEEeec-------ceEEEEec
Q 001295 831 GKISLFNMM--TFKTMATFMP-------PPPAATFLAF--HPQDNN-IIAIGMDDSSIQIYNVRV-------DEVKSKLK 891 (1106)
Q Consensus 831 g~i~vwd~~--~~~~~~~~~~-------~~~~v~~l~~--s~~d~~-~la~g~~dg~v~iwd~~~-------~~~~~~l~ 891 (1106)
.+|++|.+. ++. +..+.. ....+..+|+ ++.++. ++++...+|.+..|.+.. ++++++|.
T Consensus 127 n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~ 205 (381)
T PF02333_consen 127 NSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK 205 (381)
T ss_dssp -EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE
T ss_pred CeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec
Confidence 469999876 332 332221 1224556665 443444 666678899999888752 24677776
Q ss_pred CcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEc--CCC-cEEEEE--eCCe
Q 001295 892 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH--QDQ-IHFLVV--HETQ 966 (1106)
Q Consensus 892 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--~dg-~~l~~~--~d~~ 966 (1106)
.- ..+-.++......+|..+-+|.-|+-|+.+.........+....+. .....+..+++- .++ .||+++ .+++
T Consensus 206 ~~-sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~-~l~aDvEGlaly~~~~g~gYLivSsQG~~s 283 (381)
T PF02333_consen 206 VG-SQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGD-GLVADVEGLALYYGSDGKGYLIVSSQGDNS 283 (381)
T ss_dssp -S-S-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSS-SB-S-EEEEEEEE-CCC-EEEEEEEGGGTE
T ss_pred CC-CcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeeccccc-ccccCccceEEEecCCCCeEEEEEcCCCCe
Confidence 53 3688888988888999999998787777765433333333332221 112355666663 343 466664 6778
Q ss_pred EEEEecCCc-eEeeec
Q 001295 967 LAIFETTKL-ECVKQW 981 (1106)
Q Consensus 967 v~i~d~~~~-~~~~~~ 981 (1106)
..||+.+.. ..+..|
T Consensus 284 f~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 284 FAVYDREGPNAYVGSF 299 (381)
T ss_dssp EEEEESSTT--EEEEE
T ss_pred EEEEecCCCCcccceE
Confidence 999998753 334443
No 468
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=88.31 E-value=36 Score=35.61 Aligned_cols=207 Identities=10% Similarity=0.109 Sum_probs=121.4
Q ss_pred CeeEEEEecCCCEEEEEe-CCeEEEEEcC------CC-ceeeeecC-----CCCCeeEEEEecCCCce------------
Q 001295 812 AVPCFALSKNDSYVMSAS-GGKISLFNMM------TF-KTMATFMP-----PPPAATFLAFHPQDNNI------------ 866 (1106)
Q Consensus 812 ~v~~l~~s~~~~~l~~~s-dg~i~vwd~~------~~-~~~~~~~~-----~~~~v~~l~~s~~d~~~------------ 866 (1106)
..+.|+++|.+.+-++.. -+...+||.. .. .++-++.. .....+.+.|+. ...+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccccee
Confidence 357899999987776665 5889999986 11 22333332 234577788875 2222
Q ss_pred EEEeeCCCcEEEEEeecceE-----EEEecC-cccCe-eEEEEecC--CCEEEEE-cCCCcEEEEeCCCccccc-ceee-
Q 001295 867 IAIGMDDSSIQIYNVRVDEV-----KSKLKG-HSKRI-TGLAFSHA--LNVLVSS-GADSQLCVWSSDGWEKQK-NRFL- 934 (1106)
Q Consensus 867 la~g~~dg~v~iwd~~~~~~-----~~~l~~-h~~~V-~~l~~s~d--~~~l~s~-s~Dg~i~vwd~~~~~~~~-~~~~- 934 (1106)
++.+++||+|.=|...-+.. ...+.. ..+.| ..+++... +.+|..+ -..++|.|+|-.-.+... ....
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 46678999999998532211 122221 12334 34666533 4555444 467889999754321100 0000
Q ss_pred -cccCCCCCCCCCCceEEEcCCCcEEEE-E-------------eCCeEEEEecCCceEeeecccCCCCCCeeEEEECC--
Q 001295 935 -QIPTGRTPTAQSDTRVQFHQDQIHFLV-V-------------HETQLAIFETTKLECVKQWVPRESSAPITHATFSC-- 997 (1106)
Q Consensus 935 -~~~~~~~~~~~~i~~~~~s~dg~~l~~-~-------------~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~-- 997 (1106)
.+..+. ....+.- -.++++++ + .-|.|-+||.. +..++.+...+.-...+.|+..|
T Consensus 183 P~iPagy-----APFnIqn-ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~ 255 (336)
T TIGR03118 183 PALPAGY-----APFNVQN-LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPES 255 (336)
T ss_pred CCCCCCC-----CCcceEE-ECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhh
Confidence 001111 1111111 12333333 2 22578999986 67777776556666777888865
Q ss_pred ----CCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295 998 ----DSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus 998 ----d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
.|.+|+---.||+|-.||..+|+.+..+.
T Consensus 256 FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 256 FGSLSGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred hCCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence 66778877789999999999999888877
No 469
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=88.29 E-value=34 Score=35.34 Aligned_cols=187 Identities=13% Similarity=0.117 Sum_probs=0.0
Q ss_pred CCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec---ceEEEEecCcccCe
Q 001295 822 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---DEVKSKLKGHSKRI 897 (1106)
Q Consensus 822 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~---~~~~~~l~~h~~~V 897 (1106)
+++...+. +..++|+|+.+......+..-.-.-.+-.+.- .|++..++..|.-+-++|+.+ ..+..........-
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v-sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~ 174 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV-SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDT 174 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe-cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCc
Q ss_pred eEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceE
Q 001295 898 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC 977 (1106)
Q Consensus 898 ~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~ 977 (1106)
..++.| |++-..+..|+-+.+-|+.. ..-..+.++......+..+..+++-.+++...++ +.+-|..+.+.
T Consensus 175 ~~v~IS--Gn~AYvA~~d~GL~ivDVSn------p~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~eg-vlivd~s~~ss 245 (370)
T COG5276 175 HDVAIS--GNYAYVAWRDGGLTIVDVSN------PHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEG-VLIVDVSGPSS 245 (370)
T ss_pred eeEEEe--cCeEEEEEeCCCeEEEEccC------CCCCeEEEEEecCCceEEEEecCCeeEEEEcccc-eEEEecCCCCC
Q ss_pred eeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001295 978 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus 978 ~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
...+-......++.--.|.=.+++...+..+.-+.+-|+.+
T Consensus 246 p~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 246 PTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred ceEeeccccCCcccccceecccceeeeeccccCceeEeccC
No 470
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=88.26 E-value=2 Score=46.22 Aligned_cols=159 Identities=13% Similarity=0.084 Sum_probs=98.9
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceee-ee-cCCCC----Cee-EEEEecCCCceEEEeeCCCcEEEE-E
Q 001295 809 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMA-TF-MPPPP----AAT-FLAFHPQDNNIIAIGMDDSSIQIY-N 880 (1106)
Q Consensus 809 ~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~-~~-~~~~~----~v~-~l~~s~~d~~~la~g~~dg~v~iw-d 880 (1106)
....+..+-..|||+.+..-+..++.++++.+..... ++ ....+ .|+ .+..-. ++.-|.+++.||-|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 4566788899999999998888899999887643321 11 11111 222 222223 67778889999999877 4
Q ss_pred eecc-e----EEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCC
Q 001295 881 VRVD-E----VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 955 (1106)
Q Consensus 881 ~~~~-~----~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d 955 (1106)
+..+ . .++.++-...+|..+.--.+.+-+++-+..|++.++.....+. .+.... ...+..+++||.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~----lL~~~~-----~~~~~~~~~Sp~ 368 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKL----LLFERA-----YQAPQLVAMSPN 368 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcc----eehhhh-----hcCcceeeeCcc
Confidence 4432 1 1222222223333333333456678888899988876544221 111111 125678999999
Q ss_pred CcEEEEEeCCeEEEEecCCceE
Q 001295 956 QIHFLVVHETQLAIFETTKLEC 977 (1106)
Q Consensus 956 g~~l~~~~d~~v~i~d~~~~~~ 977 (1106)
+.++++-..++++++.+++...
T Consensus 369 ~~~Ll~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 369 QAYLLSEDQGKIRLAQLENRNP 390 (733)
T ss_pred cchheeecCCceEEEEecCCCC
Confidence 9999998889999998876544
No 471
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=88.02 E-value=18 Score=39.36 Aligned_cols=162 Identities=12% Similarity=0.126 Sum_probs=90.3
Q ss_pred cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCee-EEEEec
Q 001295 742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP-CFALSK 820 (1106)
Q Consensus 742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~-~l~~s~ 820 (1106)
....+..+-..|||+.+.+-+. .++.++++........ . +-+-..|. ....|+ .+..-.
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r--k-------l~~dspg~----------~~~~Vte~l~lL~ 278 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR--K-------LVDDSPGD----------SRHQVTEQLYLLS 278 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh--h-------hhhcCCCc----------hHHHHHHHHHHHh
Confidence 3456778889999998877666 6778887764332111 1 11110110 001111 111122
Q ss_pred CCCEEEEEe-CCeEEEE-EcCCC-----ceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCc
Q 001295 821 NDSYVMSAS-GGKISLF-NMMTF-----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH 893 (1106)
Q Consensus 821 ~~~~l~~~s-dg~i~vw-d~~~~-----~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h 893 (1106)
.|..+.+++ ||.|.-| |+... ..++.++-...++..+.-.. +.+-+++-+.+|++.++.....+.+-. ..-
T Consensus 279 Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~-~~~ 356 (733)
T COG4590 279 GGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLF-ERA 356 (733)
T ss_pred CceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceeh-hhh
Confidence 444455555 7877766 44321 12233333334444444333 456677788899998887554443322 222
Q ss_pred ccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCc
Q 001295 894 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 926 (1106)
Q Consensus 894 ~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~ 926 (1106)
-..+.-+++||.+.+|++-.. |.++++.+++.
T Consensus 357 ~~~~~~~~~Sp~~~~Ll~e~~-gki~~~~l~Nr 388 (733)
T COG4590 357 YQAPQLVAMSPNQAYLLSEDQ-GKIRLAQLENR 388 (733)
T ss_pred hcCcceeeeCcccchheeecC-CceEEEEecCC
Confidence 235667899999999987654 56999988773
No 472
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=87.99 E-value=46 Score=36.56 Aligned_cols=198 Identities=16% Similarity=0.274 Sum_probs=102.5
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEE----cCCCCceEEEEec-CC---CcEEEEeCC--CC
Q 001295 422 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF----SHPNKQLCVITCG-DD---KTIKVWDAT--NG 491 (1106)
Q Consensus 422 pdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~----s~d~~~~~l~s~~-~d---~~i~iwd~~--~~ 491 (1106)
|...+++....++-+.+||+.... ++. +. .+.++.+.. .-.|+..-|+.++ .+ .+|++|.+. ++
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~-lq~---~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g 139 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKE-LQS---LP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG 139 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-E-EEE---E---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT
T ss_pred cccceEEEEeCCCCEEEEcCCCcE-EEe---ec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC
Confidence 355677777788889999998743 332 22 234444433 1234432244443 22 479999765 34
Q ss_pred ceeEEEec-------cCCCeEEEeccccC-Cc-eEEEEEecCCeEEEEeCCCC-CceeEeeCCCCeeEEEEEecCCCeEE
Q 001295 492 AKQYIFEG-------HEAPVYSVCPHHKE-NI-QFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTY 561 (1106)
Q Consensus 492 ~~~~~~~~-------h~~~v~~~~~~~~~-~~-~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~ 561 (1106)
. +..+.. ....+..+|+..++ ++ -+++....+|.+..|.+... ...... ..|..+..
T Consensus 140 ~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~----~lVR~f~~-------- 206 (381)
T PF02333_consen 140 E-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSA----TLVREFKV-------- 206 (381)
T ss_dssp E-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEE----EEEEEEE---------
T ss_pred c-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEee----EEEEEecC--------
Confidence 3 333322 12346778865432 33 47777888999988877521 111100 01222211
Q ss_pred EeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCC-----cceeEEEccCCCCCCcCeEEEcc--CC--CEEEEEeCCC
Q 001295 562 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-----VQLLTSIDADGGLPASPRIRFNK--DG--CLLAVSTNDN 632 (1106)
Q Consensus 562 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~s~--~~--~~l~~~~~dg 632 (1106)
...+-.+..+....+|+.+-++.-|+-|+.+- ++.+....+..-...|-.+++-. ++ .+|++.-.++
T Consensus 207 ----~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~ 282 (381)
T PF02333_consen 207 ----GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDN 282 (381)
T ss_dssp ----SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGT
T ss_pred ----CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCC
Confidence 11344455566666788888888888888752 22232333322234566677643 33 3444444577
Q ss_pred cEEEEEccCC
Q 001295 633 GIKILATSDG 642 (1106)
Q Consensus 633 ~i~iwd~~~~ 642 (1106)
+..||+....
T Consensus 283 sf~Vy~r~~~ 292 (381)
T PF02333_consen 283 SFAVYDREGP 292 (381)
T ss_dssp EEEEEESSTT
T ss_pred eEEEEecCCC
Confidence 8999998754
No 473
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=87.51 E-value=57 Score=37.11 Aligned_cols=71 Identities=11% Similarity=0.211 Sum_probs=47.2
Q ss_pred CcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC
Q 001295 412 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 490 (1106)
Q Consensus 412 ~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 490 (1106)
..+|.++.+..+|.+. +|+.|| +..||..+++.++.. ......+|..+.-+-.|+ +..|+.+| |.+.+.+.
T Consensus 164 d~~V~aLv~D~~g~lW-vgT~dG-L~~fd~~~gkalql~--s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G 234 (671)
T COG3292 164 DTPVVALVFDANGRLW-VGTPDG-LSYFDAGRGKALQLA--SPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEG 234 (671)
T ss_pred CccceeeeeeccCcEE-EecCCc-ceEEccccceEEEcC--CCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhh
Confidence 4578889998888654 577788 778888887765421 112235777777777776 56666555 66666444
No 474
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=87.32 E-value=26 Score=40.68 Aligned_cols=147 Identities=14% Similarity=0.123 Sum_probs=74.4
Q ss_pred CCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEE
Q 001295 872 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 951 (1106)
Q Consensus 872 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 951 (1106)
..+...++|. .|.++..+.........+...++|.+++..+ ..+..+|+... .... .....+. ...=..+.
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~-v~~~--~~l~~~~---~~~HHD~~ 196 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGK-VIWE--YDLPGGY---YDFHHDID 196 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEE--EE--TTE---E-B-S-EE
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCC-EEEe--eecCCcc---cccccccE
Confidence 3445555553 2444444433222222266778888887666 56777777542 2111 1111110 00115678
Q ss_pred EcCCCcEEEEEe--------------CCeEEEEecCCceEeeecccCCCC-------------------------CCeeE
Q 001295 952 FHQDQIHFLVVH--------------ETQLAIFETTKLECVKQWVPRESS-------------------------APITH 992 (1106)
Q Consensus 952 ~s~dg~~l~~~~--------------d~~v~i~d~~~~~~~~~~~~~~h~-------------------------~~v~~ 992 (1106)
.-|+|++|+.+. +..|..+| .+|+.+..|....|- --+.+
T Consensus 197 ~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Ns 275 (477)
T PF05935_consen 197 ELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINS 275 (477)
T ss_dssp E-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEE
T ss_pred ECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCc
Confidence 889999988754 33567777 888887776654431 23688
Q ss_pred EEECC-CCCEEEEEEcCCeEEEEEcCCceeEEeeCCC
Q 001295 993 ATFSC-DSQLVYACFLDATVCVFSAANLKLRCRINPS 1028 (1106)
Q Consensus 993 l~~s~-d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~ 1028 (1106)
+.+.+ ++.+|+++=.-..|...|..+++..-.+...
T Consensus 276 i~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 276 IDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp EEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred cEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 99988 5555555544558888999999988877643
No 475
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.52 E-value=4.4 Score=43.84 Aligned_cols=124 Identities=10% Similarity=0.133 Sum_probs=80.9
Q ss_pred cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEE
Q 001295 348 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 427 (1106)
Q Consensus 348 ~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 427 (1106)
...++|.++.||+|.+ ++|+--.+++|.+.+....+.....+ ...+..+..|....|+.+ .-+
T Consensus 64 ~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~---------------~~ck~k~~~IlGF~W~~s-~e~ 126 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYT---------------QECKTKNANILGFCWTSS-TEI 126 (657)
T ss_pred cCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHH---------------HHhccCcceeEEEEEecC-eeE
Confidence 3557999999999999 69999999999999974332211000 012333456899999876 567
Q ss_pred EEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC
Q 001295 428 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 491 (1106)
Q Consensus 428 as~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 491 (1106)
|..+..| +-+|.+...+ +.+...+.|...|.--.|+++..-.+++|+-..+++.=+-++++
T Consensus 127 A~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 127 AFITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EEEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 7666666 7777765432 22223567888999999999988544444434444444444443
No 476
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=86.48 E-value=3.6 Score=40.05 Aligned_cols=31 Identities=32% Similarity=0.555 Sum_probs=25.1
Q ss_pred cCeEEEEEccCC------CEEEEEeCCCeEEEEEccC
Q 001295 413 VSVNRVIWSPDG------SLFGVAYSRHIVQIYSYHG 443 (1106)
Q Consensus 413 ~~V~~l~~spdg------~~las~~~d~~v~iwd~~~ 443 (1106)
..|.+++|||-| -+||+.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 379999999943 3678889999999998764
No 477
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=86.21 E-value=34 Score=40.75 Aligned_cols=111 Identities=12% Similarity=0.234 Sum_probs=72.3
Q ss_pred CCeeEEEEec--CCCEEEEEe-CCeEEEEEcCC-------C----c---------eeeeecCCCCCeeEEEEe--cCCCc
Q 001295 811 EAVPCFALSK--NDSYVMSAS-GGKISLFNMMT-------F----K---------TMATFMPPPPAATFLAFH--PQDNN 865 (1106)
Q Consensus 811 ~~v~~l~~s~--~~~~l~~~s-dg~i~vwd~~~-------~----~---------~~~~~~~~~~~v~~l~~s--~~d~~ 865 (1106)
..|..|.+.. +...|+.+. ||.|.+|.+++ . . +...+. -...+..+++. . ..+
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~r 178 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSR 178 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cce
Confidence 3455555443 445666666 79999998632 0 0 011111 23467889988 6 788
Q ss_pred eEEEeeCCCcEEEEEeecc--eEE-EEecCcccCeeEEEEecCC------CEEEEEcCCCcEEEEeC
Q 001295 866 IIAIGMDDSSIQIYNVRVD--EVK-SKLKGHSKRITGLAFSHAL------NVLVSSGADSQLCVWSS 923 (1106)
Q Consensus 866 ~la~g~~dg~v~iwd~~~~--~~~-~~l~~h~~~V~~l~~s~d~------~~l~s~s~Dg~i~vwd~ 923 (1106)
+||+++....|.||-.... +.. ..-..|...|-+|+|-++. .+|++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 9999998888888866542 111 1111266779999997653 27888999999999888
No 478
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=86.11 E-value=42 Score=36.69 Aligned_cols=173 Identities=17% Similarity=0.202 Sum_probs=93.9
Q ss_pred cccceEEEEEcCCCceEEEeecCce------EEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeE
Q 001295 742 RATKISRLIFTNSGNAILALASNAI------HLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 815 (1106)
Q Consensus 742 ~~~~i~~~~~s~~~~~l~~~~~dg~------i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~ 815 (1106)
.-+.+..+.+.+++..+++.+++|. +..+++..... ..........+.+-+. .|..... ..-...+
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~-~G~~~~~------~~~D~Eg 89 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG-GIGGVTILDMIPLRDP-DGQPFPK------NGLDPEG 89 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC-CccceEeccceeccCC-CCCcCCc------CCCChhH
Confidence 3466788999977667888888777 55555443111 0011111111111121 1221110 1225567
Q ss_pred EEEecCCCEEEEEe-C------CeEEEEEcCCCceeeeec---------------CCCCCeeEEEEecCCCceEEEeeCC
Q 001295 816 FALSKNDSYVMSAS-G------GKISLFNMMTFKTMATFM---------------PPPPAATFLAFHPQDNNIIAIGMDD 873 (1106)
Q Consensus 816 l~~s~~~~~l~~~s-d------g~i~vwd~~~~~~~~~~~---------------~~~~~v~~l~~s~~d~~~la~g~~d 873 (1106)
|++.++|.++++.- + ..|..++.. ++....+. ..+...-+++++| +++.|.++.+.
T Consensus 90 i~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~ 167 (326)
T PF13449_consen 90 IAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMES 167 (326)
T ss_pred eEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECc
Confidence 88878888877775 5 568888866 55544431 1234578999999 78855554432
Q ss_pred C-------c-------EEEEEe--ec-ceEE----EEecC-----cccCeeEEEEecCCCEEEEE-----cCCCcEEEEe
Q 001295 874 S-------S-------IQIYNV--RV-DEVK----SKLKG-----HSKRITGLAFSHALNVLVSS-----GADSQLCVWS 922 (1106)
Q Consensus 874 g-------~-------v~iwd~--~~-~~~~----~~l~~-----h~~~V~~l~~s~d~~~l~s~-----s~Dg~i~vwd 922 (1106)
. . ++|+.. .+ ++.. ..+.. ....|..+.+-+++++|+-= +....++|+.
T Consensus 168 ~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~ 247 (326)
T PF13449_consen 168 PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYR 247 (326)
T ss_pred cccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEE
Confidence 2 1 555544 33 2222 22222 35678889999998877632 1234555555
Q ss_pred CC
Q 001295 923 SD 924 (1106)
Q Consensus 923 ~~ 924 (1106)
+.
T Consensus 248 v~ 249 (326)
T PF13449_consen 248 VD 249 (326)
T ss_pred EE
Confidence 44
No 479
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.76 E-value=8.3 Score=47.96 Aligned_cols=170 Identities=12% Similarity=0.193 Sum_probs=99.4
Q ss_pred CCCCcceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeE
Q 001295 337 EDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN 416 (1106)
Q Consensus 337 ~~~~~~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~ 416 (1106)
..+|..+..-+.|...=+.+-+-|.=.+.-+ +.|+.+.+|+++++..... +.+-+..|.
T Consensus 65 ~~IP~el~eq~~~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~-------------------~d~~shtIl 123 (1311)
T KOG1900|consen 65 VNIPDELLEQFSNIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAE-------------------YDGLSHTIL 123 (1311)
T ss_pred ccCCHHHHHHhcCcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCcccc-------------------ccchhhhhe
Confidence 5566666666666555555555554332233 5689999999998654432 233344455
Q ss_pred EEE--------EccCCCEEEEEeCCCeEEEEEccCCceeeee------eeeccccCCeeEEEEcCCCCceEEEEecCCCc
Q 001295 417 RVI--------WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH------LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT 482 (1106)
Q Consensus 417 ~l~--------~spdg~~las~~~d~~v~iwd~~~~~~~~~~------~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~ 482 (1106)
.|. |-|.=++|+..+.--.|.|+-+.-.+..... ..+.-....|+|+....+|+ +|++| .||
T Consensus 124 ~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~~G-~dg- 199 (1311)
T KOG1900|consen 124 KVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFFAG-RDG- 199 (1311)
T ss_pred eeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEEee-cCC-
Confidence 444 3333445555544556777655432221111 11222345789999888888 55555 455
Q ss_pred EEEEeCC----CC---c-e----------------eEEEe-ccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCC
Q 001295 483 IKVWDAT----NG---A-K----------------QYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 534 (1106)
Q Consensus 483 i~iwd~~----~~---~-~----------------~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 534 (1106)
.+|.+. +| + + +-.+. .+..+|..+.+.. ....+.+-+..|+|.+||+..
T Consensus 200 -~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~--SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 200 -NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN--SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred -CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc--ccceeeeeccCceEEEEEccC
Confidence 455432 21 1 1 11122 5677899998744 447899999999999999976
No 480
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=85.49 E-value=57 Score=35.12 Aligned_cols=210 Identities=9% Similarity=-0.032 Sum_probs=102.5
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCe--EEEEEcCCCcee---------------eeecCCCCCeeEEEEecCCCceEEEee
Q 001295 809 PEEAVPCFALSKNDSYVMSASGGK--ISLFNMMTFKTM---------------ATFMPPPPAATFLAFHPQDNNIIAIGM 871 (1106)
Q Consensus 809 ~~~~v~~l~~s~~~~~l~~~sdg~--i~vwd~~~~~~~---------------~~~~~~~~~v~~l~~s~~d~~~la~g~ 871 (1106)
+...|+++...+..+.|++-+|+. ++++++...... ...-++.......+........++++.
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A 120 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA 120 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence 577899999999999998888766 999998533210 011123333344444431222334444
Q ss_pred CCCcEEEEEeecc----eEEEEe---cC-cccCeeEEEEecC--CCEEEEEcCCCcEEEEeCCC--cccccceeecccCC
Q 001295 872 DDSSIQIYNVRVD----EVKSKL---KG-HSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDG--WEKQKNRFLQIPTG 939 (1106)
Q Consensus 872 ~dg~v~iwd~~~~----~~~~~l---~~-h~~~V~~l~~s~d--~~~l~s~s~Dg~i~vwd~~~--~~~~~~~~~~~~~~ 939 (1106)
...+|.++..... .....+ .. -..++..+..+++ ...|..|+..+-..++++.. ........-.....
T Consensus 121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~ 200 (302)
T smart00036 121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEE 200 (302)
T ss_pred cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccc
Confidence 5567777644321 111110 00 1123333333333 45666666542344555533 11111000000000
Q ss_pred CCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCc
Q 001295 940 RTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1019 (1106)
Q Consensus 940 ~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~ 1019 (1106)
.. ....++..-+++.+|+ +.|....+.|....+..+.... .-...+.++++. ..+|++-. +..|.|+++.++
T Consensus 201 ~~---~~p~~i~~l~~~e~Ll-c~~~~~v~Vn~~G~~~~r~~~l-~w~~~p~~~~~~--~pyll~~~-~~~ievr~l~~~ 272 (302)
T smart00036 201 TS---LKPISVVQVPRDEFLL-CYDEFGVFVNLYGKRRSRNPIL-HWEFMPESFAYH--SPYLLAFH-DNGIEIRSIKTG 272 (302)
T ss_pred cc---cCceEEEEECCCeEEE-EECcEEEEEeCCCCccccceEE-EcCCcccEEEEE--CCEEEEEc-CCcEEEEECCCC
Confidence 00 0223343344554444 4444455555543122111110 113456677776 45766554 556999999999
Q ss_pred eeEEeeC
Q 001295 1020 KLRCRIN 1026 (1106)
Q Consensus 1020 ~~~~~~~ 1026 (1106)
+++..+.
T Consensus 273 ~l~q~i~ 279 (302)
T smart00036 273 ELLQELA 279 (302)
T ss_pred ceEEEEe
Confidence 9988776
No 481
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=85.42 E-value=3.9 Score=35.58 Aligned_cols=78 Identities=23% Similarity=0.321 Sum_probs=54.0
Q ss_pred cchhHHHHHHHHHHHhHhcHHHHHHHHHHhhCCCcc-HH-HHHHHHhcCCHHHHHHHhcccccccCccccchhhhHHHHH
Q 001295 2 SSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFN-MK-YFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQ 79 (1106)
Q Consensus 2 ~~~~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~-~~-~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q 79 (1106)
..+.+|-...|.+|++..| +.+-+++|.|+++. ++ +| |+.++.|.... .+. ---...+.
T Consensus 32 ~~L~~E~~~Fi~~Fi~~rG---nlKe~e~~lgiSYPTvR~rL---------d~ii~~lg~~~-~~~------~~~~~~~~ 92 (113)
T PF09862_consen 32 ARLSPEQLEFIKLFIKNRG---NLKEMEKELGISYPTVRNRL---------DKIIEKLGYEE-DEE------EEEEDERK 92 (113)
T ss_pred hcCCHHHHHHHHHHHHhcC---CHHHHHHHHCCCcHHHHHHH---------HHHHHHhCCCC-Ccc------cccchhHH
Confidence 4677888899999999999 88899999999998 32 22 22233332211 111 11235678
Q ss_pred HHHHHHhCCC--HHHHHHHHH
Q 001295 80 KYLEALDKHD--RAKAVEILV 98 (1106)
Q Consensus 80 ~~lEll~~~~--~~~A~~~l~ 98 (1106)
..|+.|++|+ .++|++.|+
T Consensus 93 ~IL~~L~~GeIs~eeA~~~Lk 113 (113)
T PF09862_consen 93 EILDKLEKGEISVEEALEILK 113 (113)
T ss_pred HHHHHHHcCCCCHHHHHHHhC
Confidence 8999999998 677888774
No 482
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=85.10 E-value=3.5 Score=48.59 Aligned_cols=136 Identities=14% Similarity=0.149 Sum_probs=76.9
Q ss_pred cEEEEEecC-CCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEc--cCCCEEEE
Q 001295 353 PMSMDFHPV-QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS--PDGSLFGV 429 (1106)
Q Consensus 353 v~~~~~sp~-g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s--pdg~~las 429 (1106)
|+.+....- |..+|+.+..||.|.+|.+++--......-.-.|-..............-...++.+++. ...++||+
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV 182 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV 182 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence 444444332 233788889999999998643110000000000000000000000112234489999998 78889999
Q ss_pred EeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCC----ceEEEEecCCCcEEEEeC
Q 001295 430 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK----QLCVITCGDDKTIKVWDA 488 (1106)
Q Consensus 430 ~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~----~~~l~s~~~d~~i~iwd~ 488 (1106)
++....|.||-....+.-.....-..|...|-+|+|.++.. ...+++++-.|.+.+|++
T Consensus 183 SsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 183 SSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 98888888886654211111101113667899999987651 136888899999999887
No 483
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.90 E-value=5 Score=40.65 Aligned_cols=75 Identities=13% Similarity=0.100 Sum_probs=52.4
Q ss_pred EecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccC-------CCCcCeEEEEEccCCCEEEEE
Q 001295 358 FHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK-------DPGVSVNRVIWSPDGSLFGVA 430 (1106)
Q Consensus 358 ~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-------~h~~~V~~l~~spdg~~las~ 430 (1106)
+..++.+ |.+-+.+|.+++||+.+++.+... ..+. .++. .....|..+.++.+|.-|++-
T Consensus 18 l~~~~~~-Ll~iT~~G~l~vWnl~~~k~~~~~-~Si~-----------pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l 84 (219)
T PF07569_consen 18 LECNGSY-LLAITSSGLLYVWNLKKGKAVLPP-VSIA-----------PLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL 84 (219)
T ss_pred EEeCCCE-EEEEeCCCeEEEEECCCCeeccCC-ccHH-----------HHhcccccccCCCCCcEEEEEEcCCCCEEEEE
Confidence 5567887 556688999999999998876531 1111 1122 466789999999999887776
Q ss_pred eCCCeEEEEEccCCce
Q 001295 431 YSRHIVQIYSYHGGDE 446 (1106)
Q Consensus 431 ~~d~~v~iwd~~~~~~ 446 (1106)
+ +|....|+.+-+..
T Consensus 85 s-ng~~y~y~~~L~~W 99 (219)
T PF07569_consen 85 S-NGDSYSYSPDLGCW 99 (219)
T ss_pred e-CCCEEEecccccee
Confidence 5 57788888765443
No 484
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.39 E-value=27 Score=38.88 Aligned_cols=93 Identities=10% Similarity=0.099 Sum_probs=62.6
Q ss_pred cCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCC---CEEEEEECCC
Q 001295 512 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK---NRFLAAGDDF 588 (1106)
Q Consensus 512 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~d~ 588 (1106)
++.|..++-.|.+|.+.++-.+..+.-..+......|.|-.++-+. +++.....-.+..++|+|+. ..++.-..|+
T Consensus 112 s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~-~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sdn 190 (741)
T KOG4460|consen 112 SPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE-RFFTSSTSLTLKQAAWHPSSILDPHLVLLTSDN 190 (741)
T ss_pred cCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc-eeeccCCceeeeeccccCCccCCceEEEEecCc
Confidence 4556788888889987776544334444444444445555554443 55555555567778999985 7788889999
Q ss_pred eEEEEECCCcceeEEEc
Q 001295 589 SIKFWDMDSVQLLTSID 605 (1106)
Q Consensus 589 ~i~iwd~~~~~~~~~~~ 605 (1106)
.||+||+...+.+....
T Consensus 191 viRiy~lS~~telylqp 207 (741)
T KOG4460|consen 191 VIRIYSLSEPTELYLQP 207 (741)
T ss_pred EEEEEecCCcchhhccC
Confidence 99999998776664443
No 485
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=84.39 E-value=31 Score=31.19 Aligned_cols=119 Identities=13% Similarity=0.116 Sum_probs=66.6
Q ss_pred EEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc-----CCCEEEE
Q 001295 355 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-----DGSLFGV 429 (1106)
Q Consensus 355 ~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-----dg~~las 429 (1106)
.-.|.....- |++++..|.|.|.+.......... + ..+. .+..-...|++++-.+ +...|+.
T Consensus 3 iGkfDG~~pc-L~~aT~~gKV~IH~ph~~~~~~~~----~-----~~~i---~~LNin~~italaaG~l~~~~~~D~Lli 69 (136)
T PF14781_consen 3 IGKFDGVHPC-LACATTGGKVFIHNPHERGQRTGR----Q-----DSDI---SFLNINQEITALAAGRLKPDDGRDCLLI 69 (136)
T ss_pred EEEeCCCcee-EEEEecCCEEEEECCCcccccccc----c-----cCce---eEEECCCceEEEEEEecCCCCCcCEEEE
Confidence 3445555553 777778899999987654322110 0 0000 0122234677776444 3456776
Q ss_pred EeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCC--ceEEEEecCCCcEEEEeCCCCc
Q 001295 430 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK--QLCVITCGDDKTIKVWDATNGA 492 (1106)
Q Consensus 430 ~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~--~~~l~s~~~d~~i~iwd~~~~~ 492 (1106)
|+. ..+..||+.....+- ++.-.+.|+++.+-.-+. ..+++.| .++.|.-+|.+-.+
T Consensus 70 Gt~-t~llaYDV~~N~d~F----yke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e 128 (136)
T PF14781_consen 70 GTQ-TSLLAYDVENNSDLF----YKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNE 128 (136)
T ss_pred ecc-ceEEEEEcccCchhh----hhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcE
Confidence 664 569999999876553 334456788887732211 1134444 46778777744333
No 486
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=84.26 E-value=62 Score=34.50 Aligned_cols=147 Identities=14% Similarity=0.131 Sum_probs=82.7
Q ss_pred cEEEEeCCCCceeEEEecc------CCCeEEEeccccCC----ceEEEEEecCCeEEEEeCCCCCceeEeeCC-------
Q 001295 482 TIKVWDATNGAKQYIFEGH------EAPVYSVCPHHKEN----IQFIFSTALDGKIKAWLYDNLGSRVDYEAP------- 544 (1106)
Q Consensus 482 ~i~iwd~~~~~~~~~~~~h------~~~v~~~~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------- 544 (1106)
.|.+||+.+++.++++.-. ...+..+.+..... +...++-+..+.|.++|+.+++........
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 6778999999888776522 34566666654322 334445555678999999875443221110
Q ss_pred ------------CCeeEEEEEec---CCCeEE----------------------------------EeeeccceeEEEEc
Q 001295 545 ------------GRWCTTMAYSA---DGTRTY----------------------------------QGFRKRSLGVVQFD 575 (1106)
Q Consensus 545 ------------~~~v~~~~~s~---~~~~~~----------------------------------~~~~~~~i~~~~~~ 575 (1106)
...+..++.++ +++.++ .|.+......+.++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 11255666655 544222 12222355667888
Q ss_pred CCCCEEEEEECCCeEEEEECCCc---ceeEEEccCCC-CCCcCeEEEcc--CCCEEEEE
Q 001295 576 TTKNRFLAAGDDFSIKFWDMDSV---QLLTSIDADGG-LPASPRIRFNK--DGCLLAVS 628 (1106)
Q Consensus 576 ~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~-~~~v~~v~~s~--~~~~l~~~ 628 (1106)
++|..+++--..+.|..|+..+. +....+..... ...+..+.+.+ +|.+.+..
T Consensus 195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 89998888889999999998761 12222222222 34556777777 66555544
No 487
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=84.00 E-value=1.3e+02 Score=38.03 Aligned_cols=417 Identities=14% Similarity=0.100 Sum_probs=0.0
Q ss_pred CcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccC-CCCcCeEEEEEcc-CCCEEEE
Q 001295 352 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK-DPGVSVNRVIWSP-DGSLFGV 429 (1106)
Q Consensus 352 ~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~h~~~V~~l~~sp-dg~~las 429 (1106)
...+++.-|||. |..|..+-.=+|.--..-..+.+ +. ....-=..+|.|| ||.+-++
T Consensus 366 aPvala~a~DGS--l~VGDfNyIRRI~~dg~v~tIl~-------------------L~~t~~sh~Yy~AvsPvdgtlyvS 424 (1899)
T KOG4659|consen 366 APVALAYAPDGS--LIVGDFNYIRRISQDGQVSTILT-------------------LGLTDTSHSYYIAVSPVDGTLYVS 424 (1899)
T ss_pred ceeeEEEcCCCc--EEEccchheeeecCCCceEEEEE-------------------ecCCCccceeEEEecCcCceEEec
Q ss_pred EeCCCeEEEEEccCCceeeeeeeeccccCCeeE----------------------EEEcCCCCceEEEEecCCCcEEEEe
Q 001295 430 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVND----------------------IAFSHPNKQLCVITCGDDKTIKVWD 487 (1106)
Q Consensus 430 ~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~----------------------~~~s~d~~~~~l~s~~~d~~i~iwd 487 (1106)
--..+.|.--.--.++....-...-.-++.+.- |+|+.+|.. +|+-|.. |++-|
T Consensus 425 dp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~l-YfaD~t~---IR~iD 500 (1899)
T KOG4659|consen 425 DPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNL-YFADGTR---IRVID 500 (1899)
T ss_pred CCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcE-EEecccE---EEEec
Q ss_pred CCCCceeEEEeccCCCeE-------------EEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEe
Q 001295 488 ATNGAKQYIFEGHEAPVY-------------SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 554 (1106)
Q Consensus 488 ~~~~~~~~~~~~h~~~v~-------------~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 554 (1106)
++|-.-..+..|..... .+.| |.. |+..-.|+++.+.|
T Consensus 501 -~~giIstlig~~~~~~~p~~C~~~~kl~~~~leW-PT~----LaV~Pmdnsl~Vld----------------------- 551 (1899)
T KOG4659|consen 501 -TTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEW-PTS----LAVDPMDNSLLVLD----------------------- 551 (1899)
T ss_pred -cCceEEEeccCCCCccCccccccccchhheeeec-ccc----eeecCCCCeEEEee-----------------------
Q ss_pred cCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcE
Q 001295 555 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGI 634 (1106)
Q Consensus 555 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 634 (1106)
.-..+.+++++...+..+.--...+=++..... .+..|.....-.+++++++|.+.++-++...|
T Consensus 552 -------------~nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~s--kla~H~tl~~~r~Iavg~~G~lyvaEsD~rri 616 (1899)
T KOG4659|consen 552 -------------TNVVLRITVVHRVRIILGRPTHCDLANATSSAS--KLADHRTLLIQRDIAVGTDGALYVAESDGRRI 616 (1899)
T ss_pred -------------cceEEEEccCccEEEEcCCccccccCCCchhhh--hhhhhhhhhhhhceeecCCceEEEEeccchhh
Q ss_pred EEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccC
Q 001295 635 KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEES 714 (1106)
Q Consensus 635 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 714 (1106)
.-...-+....+..+.+......+.....-.+|+........+
T Consensus 617 Nrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A------------------------------------- 659 (1899)
T KOG4659|consen 617 NRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQA------------------------------------- 659 (1899)
T ss_pred hheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhcc-------------------------------------
Q ss_pred CCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCC
Q 001295 715 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQP 794 (1106)
Q Consensus 715 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~ 794 (1106)
+-..+.+++++|||...++-..+-.|+--.-+....++....-..
T Consensus 660 ---------------------------~lnsp~alaVsPdg~v~IAD~gN~rIr~Vs~~~~~~~~sr~YEi~-------- 704 (1899)
T KOG4659|consen 660 ---------------------------KLNSPYALAVSPDGDVIIADSGNSRIRKVSARMAKYDGSRTYEIT-------- 704 (1899)
T ss_pred ---------------------------ccCCcceEEECCCCcEEEecCCchhhhhhhhcccccCCCceeecc--------
Q ss_pred CCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe---CCeEEEEEc---CCCceeeeecCCCCCeeEEEEecCCCceEE
Q 001295 795 PSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS---GGKISLFNM---MTFKTMATFMPPPPAATFLAFHPQDNNIIA 868 (1106)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s---dg~i~vwd~---~~~~~~~~~~~~~~~v~~l~~s~~d~~~la 868 (1106)
....-.--.|+.+|+..-+.+ ..++..|.. .+...+.++....+.+..+.-.. ++....
T Consensus 705 --------------~p~~QE~Y~Fnr~GqH~sTvsliTget~ynFtY~v~ss~~~lsei~~a~Gn~l~ilrd~-~s~~~~ 769 (1899)
T KOG4659|consen 705 --------------DPERQEKYTFNRHGQHSSTVSLITGETFYNFTYQVDSSIGMLSEITDASGNVLRVLRDN-DSLFDL 769 (1899)
T ss_pred --------------CcccceeEEEeccceeeeeEEEEeceeEEEEEEecCCCcchhhhhhhcCCcEEEEEecC-CCCcce
Q ss_pred EeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCC-CcEEEEeCC
Q 001295 869 IGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD-SQLCVWSSD 924 (1106)
Q Consensus 869 ~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-g~i~vwd~~ 924 (1106)
-..-+|++..--......+..+......-..+.+.-....|++-..| |.-.+|+.+
T Consensus 770 ~~~~~~q~~~l~~~~~g~L~~vSt~d~~~~~~ty~g~tglL~Tk~d~tg~~~~yeYD 826 (1899)
T KOG4659|consen 770 ETTLGGQTTLLMSAYDGTLEQVSTRDATSRDATYLGYTGLLLTKRDDTGTAVVYEYD 826 (1899)
T ss_pred eecCCCcEEEEEEecCCceeEeccCCCccceeeeeccccceeeeecccceEEEEccc
No 488
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=83.93 E-value=85 Score=35.83 Aligned_cols=75 Identities=21% Similarity=0.318 Sum_probs=47.7
Q ss_pred eccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCC
Q 001295 346 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 425 (1106)
Q Consensus 346 ~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 425 (1106)
.+.-...|.++.|.-.|. +-.|+.|| +..+|..+++.+.... ......|.++.-+-.|+
T Consensus 160 ~ll~d~~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql~s------------------~~~dk~I~al~~d~qg~ 218 (671)
T COG3292 160 PLLKDTPVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQLAS------------------PPLDKAINALIADVQGR 218 (671)
T ss_pred ccccCccceeeeeeccCc--EEEecCCc-ceEEccccceEEEcCC------------------CcchhhHHHHHHHhcCc
Confidence 334567899999999998 44456554 5567777777665310 11114566666655665
Q ss_pred EEEEEeCCCeEEEEEccC
Q 001295 426 LFGVAYSRHIVQIYSYHG 443 (1106)
Q Consensus 426 ~las~~~d~~v~iwd~~~ 443 (1106)
|.+|+.+| |.+.+..+
T Consensus 219 -LWVGTdqG-v~~~e~~G 234 (671)
T COG3292 219 -LWVGTDQG-VYLQEAEG 234 (671)
T ss_pred -EEEEeccc-eEEEchhh
Confidence 55677777 77777766
No 489
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.86 E-value=4.8 Score=40.78 Aligned_cols=67 Identities=9% Similarity=0.171 Sum_probs=46.0
Q ss_pred EccCCCEEEEEeCCCeEEEEEccCCceeeeee----eec-------cccCCeeEEEEcCCCCceEEEEecCCCcEEEEeC
Q 001295 420 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL----EID-------AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA 488 (1106)
Q Consensus 420 ~spdg~~las~~~d~~v~iwd~~~~~~~~~~~----~l~-------~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 488 (1106)
+..++.+|++.+.+|.+++||+.+++.+.... .+. .....|..+.++.+|. -+++-+ +|..+.|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~--PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV--PIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC--EEEEEe-CCCEEEecc
Confidence 44579999999999999999999887643220 121 3456677888887776 445444 466777774
Q ss_pred C
Q 001295 489 T 489 (1106)
Q Consensus 489 ~ 489 (1106)
.
T Consensus 95 ~ 95 (219)
T PF07569_consen 95 D 95 (219)
T ss_pred c
Confidence 3
No 490
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.74 E-value=22 Score=39.52 Aligned_cols=42 Identities=19% Similarity=0.186 Sum_probs=31.6
Q ss_pred ccceEEEEeCCC--CCEEEEEeCCCcEEEEeecCCCCccCCCCC
Q 001295 1040 VHPLVIAAHPQE--PNEFALGLSDGGVHVFEPLESEGKWGVPPP 1081 (1106)
Q Consensus 1040 v~~~~~~~~~~d--~~~l~t~~~Dg~v~vW~~~~~~~~~~~~~~ 1081 (1106)
+....++|+|+. ...|+.-+.|+.+++++.+.....|-.+.+
T Consensus 166 ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylqpge 209 (741)
T KOG4460|consen 166 LTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQPGE 209 (741)
T ss_pred eeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhccCCC
Confidence 444478899864 467888888999999999988866655443
No 491
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.44 E-value=18 Score=39.50 Aligned_cols=141 Identities=6% Similarity=0.061 Sum_probs=85.3
Q ss_pred eeEEEEecCCCceEEEeeCCCcEEEEEeecc--eEEEEe-cCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCccccc
Q 001295 854 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD--EVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 930 (1106)
Q Consensus 854 v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~--~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~ 930 (1106)
.+.+-|.. .++.|+ +...|.+.=|-+... ...-.+ ....++|.++.||+|.+.||.--.|.+|.+.+....+...
T Consensus 25 sngvFfDD-aNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 25 SNGVFFDD-ANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred ccceeecc-CcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence 34455543 333333 334455666655432 111122 2345689999999999999999999999999985432211
Q ss_pred ceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCc-eEeeecccCCCCCCeeEEEECCCCCEEE
Q 001295 931 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL-ECVKQWVPRESSAPITHATFSCDSQLVY 1003 (1106)
Q Consensus 931 ~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~-~~~~~~~~~~h~~~v~~l~~s~d~~~l~ 1003 (1106)
.....+......|...+|+.. .-+|...+..+.+|-.... +.++... .|+..|.-..|.++-+.++
T Consensus 103 ----~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVk--s~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 103 ----EYTQECKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVK--SHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred ----HHHHHhccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhh--hcccCccEEEEccccceEe
Confidence 111112222235788899877 6667767777777765432 2233332 5677888889999888643
No 492
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.44 E-value=96 Score=38.22 Aligned_cols=249 Identities=11% Similarity=0.055 Sum_probs=115.4
Q ss_pred EEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEE
Q 001295 749 LIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA 828 (1106)
Q Consensus 749 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~ 828 (1106)
.++..-|+.+.+|+.+|.+.+|.+........... .. ....... .-+..+|..+...+.-.++.+-
T Consensus 20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~-~~---------~~~~~~~----~~~kk~i~~l~~~~~~~~ll~l 85 (877)
T KOG2063|consen 20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVEL-VT---------ETVKFEK----EFSKKPINKLLVCASLELLLIL 85 (877)
T ss_pred hHHHHhCCEEEEEcCCCcEEEEeccccccccchhh-hc---------chhHHhh----hhccchhHHHhhcchhcchhee
Confidence 44556677899999999999998765322111100 00 0000110 1135677777777777788888
Q ss_pred eCCeEEEEEcCCCceeeeecCCCCCeeEEEEe--cC-CC--ceEEEee-CCCc-EEEEEeecceEEEEecCcccCeeEEE
Q 001295 829 SGGKISLFNMMTFKTMATFMPPPPAATFLAFH--PQ-DN--NIIAIGM-DDSS-IQIYNVRVDEVKSKLKGHSKRITGLA 901 (1106)
Q Consensus 829 sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s--~~-d~--~~la~g~-~dg~-v~iwd~~~~~~~~~l~~h~~~V~~l~ 901 (1106)
+|+.|.++++.+.+.... ..+-..+...+.. +. .+ .+.++.+ .... ...|+-..+..+..--+-.....+++
T Consensus 86 ~dsqi~~~~l~~~~~~~~-~~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 164 (877)
T KOG2063|consen 86 SDSQIAVHKLPELEPVPS-GTRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARA 164 (877)
T ss_pred cCCcceeeecCccccccc-ccccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhc
Confidence 899999998876655211 1111111111110 00 01 1222222 1111 12222222222211111112222233
Q ss_pred EecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEeee-
Q 001295 902 FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQ- 980 (1106)
Q Consensus 902 ~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~- 980 (1106)
| .+..+.++-.+....+|.-.++......+..... ...-..+.--.++..++.+.|+...+-|.......+.
T Consensus 165 ~--~~~~~c~~~~~~~~ii~~~~~~~~~~~~~s~~~~-----~s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~~~~~~~ 237 (877)
T KOG2063|consen 165 W--CGHIVCLGLKKSYYIINNTSKGVGPNLFPSSMDN-----ESRKPLIKSLSDQSELLLGKDNIGVVVDLNGIIAQRGT 237 (877)
T ss_pred c--cceeEEEeecceeEEEecCCCccccceeeecccc-----ccCCCeEEEecCCceEEEccCceEEEEecCCcccCCCc
Confidence 3 2444444444344444544443211111111100 0122345555666677777777777777543221111
Q ss_pred cccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEee
Q 001295 981 WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1025 (1106)
Q Consensus 981 ~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~ 1025 (1106)
+. -+....++.+ +.-|+++-+ ++.|.||+..++.+++.+
T Consensus 238 l~---ws~~P~~v~~--~~PYlIa~~-~~~veI~s~~~~qlvQSI 276 (877)
T KOG2063|consen 238 LV---WSEVPLSVVV--ESPYLIALL-DRSVEIRSKLDGQLVQSI 276 (877)
T ss_pred eE---ecccchhhcc--cCceEEEEc-cccEEEEeccCHHHhhcc
Confidence 00 0112222222 456777654 669999999999888776
No 493
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=82.42 E-value=37 Score=38.48 Aligned_cols=108 Identities=7% Similarity=0.063 Sum_probs=0.0
Q ss_pred CCCceEEEcCCCcEEEEEe-CCeEEEEecCCceEeeecccC-----CCCCCeeEEEECCCC------CEEEEEE------
Q 001295 945 QSDTRVQFHQDQIHFLVVH-ETQLAIFETTKLECVKQWVPR-----ESSAPITHATFSCDS------QLVYACF------ 1006 (1106)
Q Consensus 945 ~~i~~~~~s~dg~~l~~~~-d~~v~i~d~~~~~~~~~~~~~-----~h~~~v~~l~~s~d~------~~l~t~s------ 1006 (1106)
.....++|.|||++|++-. .|.|++++..++......... ........|+++|+- .+|....
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~ 109 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD 109 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Q ss_pred ----cCCeEEEEEcCCc--------eeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCC
Q 001295 1007 ----LDATVCVFSAANL--------KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG 1062 (1106)
Q Consensus 1007 ----~Dg~i~vwd~~~~--------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg 1062 (1106)
....|.-|.+... .++..+. ....|... .|.|.| ||.++++.++.+
T Consensus 110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP----~~~~H~Gg-----rI~FgP-DG~LYVs~GD~g 167 (454)
T TIGR03606 110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLP----AGNDHNGG-----RLVFGP-DGKIYYTIGEQG 167 (454)
T ss_pred CCccCCcEEEEEEecCCCCccccceEEEecCC----CCCCcCCc-----eEEECC-CCcEEEEECCCC
No 494
>PRK13615 lipoprotein LpqB; Provisional
Probab=81.74 E-value=1.2e+02 Score=35.76 Aligned_cols=153 Identities=9% Similarity=-0.028 Sum_probs=87.9
Q ss_pred eeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCC-cccccce
Q 001295 854 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNR 932 (1106)
Q Consensus 854 v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~-~~~~~~~ 932 (1106)
..+++.++ ++..+|....++.++++... +.....+. ...++.-.|.++| ++-++..+...++..... ++.. ..
T Consensus 336 ~~s~avS~-dg~~~A~v~~~~~l~vg~~~-~~~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~-~v 409 (557)
T PRK13615 336 ADAATLSA-DGRQAAVRNASGVWSVGDGD-RDAVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGH-PV 409 (557)
T ss_pred cccceEcC-CCceEEEEcCCceEEEecCC-Ccceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceE-Ee
Confidence 37889999 88888888778878887655 22222222 2246667787777 555544433455554433 2211 11
Q ss_pred eecccCCCCCCCCCCceEEEcCCCcEEEEEe----CCeEEEEecC--Cc--eEe--eecccCCCCCCeeEEEECCCCCEE
Q 001295 933 FLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----ETQLAIFETT--KL--ECV--KQWVPRESSAPITHATFSCDSQLV 1002 (1106)
Q Consensus 933 ~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~----d~~v~i~d~~--~~--~~~--~~~~~~~h~~~v~~l~~s~d~~~l 1002 (1106)
..... ....|..+..|+||..++.-. .++|.+--+. .+ ..+ ...........+.++.|..+++++
T Consensus 410 ~v~~~-----~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~la 484 (557)
T PRK13615 410 AVSWT-----ATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVA 484 (557)
T ss_pred ecccc-----CCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEE
Confidence 11111 124799999999999998832 3566653332 22 122 111111123489999999999986
Q ss_pred EEEE---cCCeEEEEEcC
Q 001295 1003 YACF---LDATVCVFSAA 1017 (1106)
Q Consensus 1003 ~t~s---~Dg~i~vwd~~ 1017 (1106)
+.+. .+..+++..+.
T Consensus 485 Vl~~~~~~~~~v~~v~v~ 502 (557)
T PRK13615 485 TLTLAPDGERQVELHQVG 502 (557)
T ss_pred EEeccCCCCceEEEEECC
Confidence 6552 33556666665
No 495
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.53 E-value=33 Score=43.50 Aligned_cols=33 Identities=36% Similarity=0.644 Sum_probs=27.1
Q ss_pred CCcEEEEEecCCCeEEEEEeccCcEEEEecCCcc
Q 001295 351 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE 384 (1106)
Q Consensus 351 ~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~ 384 (1106)
.....++|+|... ++|.|+..|.|.++-...-+
T Consensus 36 ~~~~~~afD~~q~-llai~t~tg~i~~yg~~~ve 68 (993)
T KOG1983|consen 36 STPSALAFDPTQG-LLAIGTRTGAIKIYGQPGVE 68 (993)
T ss_pred CCCcceeeccccc-eEEEEEecccEEEecccceE
Confidence 3567789999988 79999999999999765443
No 496
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=81.51 E-value=24 Score=39.07 Aligned_cols=144 Identities=8% Similarity=0.085 Sum_probs=83.9
Q ss_pred CCceE-EEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCC--------CEEEEEcCCCcEEEEeCCC-cccccce
Q 001295 863 DNNII-AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL--------NVLVSSGADSQLCVWSSDG-WEKQKNR 932 (1106)
Q Consensus 863 d~~~l-a~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~--------~~l~s~s~Dg~i~vwd~~~-~~~~~~~ 932 (1106)
+..+| ..|..-..++--|+.-|+.+..+.-|..- -|.|.|+. +.|+-.|..+ |.--|.+- +.+. .
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~s-vFrIDPR~~gNKi--~ 552 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYS-VFRIDPRARGNKI--K 552 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccc-eEEecccccCCce--e
Confidence 44444 44555567888888999999999988775 47787753 3555555444 33333322 1111 1
Q ss_pred eecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeE
Q 001295 933 FLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1011 (1106)
Q Consensus 933 ~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i 1011 (1106)
......-.. ...-.+.. ...+.++|+ +..|.|++||--..+....++ +-...|..+..+.+|+++++.+ ..++
T Consensus 553 v~esKdY~t--Kn~Fss~~-tTesGyIa~as~kGDirLyDRig~rAKtalP--~lG~aIk~idvta~Gk~ilaTC-k~yl 626 (776)
T COG5167 553 VVESKDYKT--KNKFSSGM-TTESGYIAAASRKGDIRLYDRIGKRAKTALP--GLGDAIKHIDVTANGKHILATC-KNYL 626 (776)
T ss_pred eeeehhccc--cccccccc-cccCceEEEecCCCceeeehhhcchhhhcCc--ccccceeeeEeecCCcEEEEee-cceE
Confidence 111111000 01112222 234456666 677899999976544433333 5578999999999999987666 4466
Q ss_pred EEEEcC
Q 001295 1012 CVFSAA 1017 (1106)
Q Consensus 1012 ~vwd~~ 1017 (1106)
.+-|+.
T Consensus 627 lL~d~~ 632 (776)
T COG5167 627 LLTDVP 632 (776)
T ss_pred EEEecc
Confidence 666653
No 497
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=80.63 E-value=1.1e+02 Score=37.96 Aligned_cols=78 Identities=18% Similarity=0.143 Sum_probs=52.6
Q ss_pred CCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEee----CCCc----ccCCCCCCC-CccceEEEEeCCCCCEEEE
Q 001295 987 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI----NPSA----YLPAGVSSS-NVHPLVIAAHPQEPNEFAL 1057 (1106)
Q Consensus 987 ~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~----~~~~----~~~~~~~~~-~v~~~~~~~~~~d~~~l~t 1057 (1106)
...|.+++...-+.+++.+..||+|.++|-.+.+.+... .... ....|-+-. .-.++.++||| .+..++.
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSP-t~c~~v~ 337 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSP-TMCSLVQ 337 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECc-ccceEEE
Confidence 567888988888889999999999999999888766554 2111 001110000 00234588999 4778888
Q ss_pred EeCCCcEE
Q 001295 1058 GLSDGGVH 1065 (1106)
Q Consensus 1058 ~~~Dg~v~ 1065 (1106)
-..||.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 88888865
No 498
>PLN02193 nitrile-specifier protein
Probab=80.61 E-value=1.2e+02 Score=35.22 Aligned_cols=154 Identities=9% Similarity=0.058 Sum_probs=75.2
Q ss_pred CCceEEEeeCCC-----cEEEEEeecceE--EEEecC-cccCeeEEEEecCCCEEEEEcCCC-----cEEEEeCCCcccc
Q 001295 863 DNNIIAIGMDDS-----SIQIYNVRVDEV--KSKLKG-HSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQ 929 (1106)
Q Consensus 863 d~~~la~g~~dg-----~v~iwd~~~~~~--~~~l~~-h~~~V~~l~~s~d~~~l~s~s~Dg-----~i~vwd~~~~~~~ 929 (1106)
++++++.|+.++ .+.+||+.+.+- +..+.. ...+-...+..-++++.+.|+.++ .+..||+.+.+
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~-- 305 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKK-- 305 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCE--
Confidence 667888887653 588888876432 222210 111111112223567777777653 35677776532
Q ss_pred cceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeC----CeEEEEecCCceEeeecccC--CCCCCeeEEEECCCCCEE
Q 001295 930 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE----TQLAIFETTKLECVKQWVPR--ESSAPITHATFSCDSQLV 1002 (1106)
Q Consensus 930 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d----~~v~i~d~~~~~~~~~~~~~--~h~~~v~~l~~s~d~~~l 1002 (1106)
+..+........ ...-..++ .-+++.++. +.+ ..+.+||+.+.+-...-... .......+ +..-+++++
T Consensus 306 -W~~~~~~~~~~~-~R~~~~~~-~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~-~~~~~~~iy 381 (470)
T PLN02193 306 -WFHCSTPGDSFS-IRGGAGLE-VVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFA-SAAVGKHIV 381 (470)
T ss_pred -EEeCCCCCCCCC-CCCCcEEE-EECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeE-EEEECCEEE
Confidence 111211111000 00111222 235666655 333 46899999887654332110 00111112 222366777
Q ss_pred EEEEcC--------------CeEEEEEcCCceeE
Q 001295 1003 YACFLD--------------ATVCVFSAANLKLR 1022 (1106)
Q Consensus 1003 ~t~s~D--------------g~i~vwd~~~~~~~ 1022 (1106)
+.|+.+ ..+.+||..+.+-.
T Consensus 382 v~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~ 415 (470)
T PLN02193 382 IFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE 415 (470)
T ss_pred EECCccCCccccccCccceeccEEEEEcCcCEEE
Confidence 777753 24788898887654
No 499
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=80.39 E-value=1e+02 Score=34.39 Aligned_cols=159 Identities=13% Similarity=0.055 Sum_probs=81.8
Q ss_pred CCCEEEEEeCCeEEEEEcCCCceeeeecCCC-CCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcc---cC
Q 001295 821 NDSYVMSASGGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS---KR 896 (1106)
Q Consensus 821 ~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~-~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~---~~ 896 (1106)
+|+.++...++.+..+|..+++......... ..+..-.+-. ++ .+..++.+|.+.-.+..+|+.+-....-. ..
T Consensus 111 ~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~-~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~ 188 (370)
T COG1520 111 DGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVG-DG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLS 188 (370)
T ss_pred CCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEc-Cc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccc
Confidence 7875555558899999998888887776555 1122222222 33 33334467888888888887765533211 11
Q ss_pred eeEEEEecCCCEEEEEcC--CCcEEEEeCCCcccccceeecccCCCCCC--CCCCceEEEcCCCcEEEEEeCCeEEEEec
Q 001295 897 ITGLAFSHALNVLVSSGA--DSQLCVWSSDGWEKQKNRFLQIPTGRTPT--AQSDTRVQFHQDQIHFLVVHETQLAIFET 972 (1106)
Q Consensus 897 V~~l~~s~d~~~l~s~s~--Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s~dg~~l~~~~d~~v~i~d~ 972 (1106)
+.+-....++ .+..+.. ++.+.-.|..++............+.... ...+..-..--++...+.+.++.+...|.
T Consensus 189 ~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~ 267 (370)
T COG1520 189 IYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDA 267 (370)
T ss_pred cccCceeecc-eEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEc
Confidence 1111112233 3333433 55566666666554433222222222110 00111111222333334456677888888
Q ss_pred CCceEeeecc
Q 001295 973 TKLECVKQWV 982 (1106)
Q Consensus 973 ~~~~~~~~~~ 982 (1106)
.+++.+-.+.
T Consensus 268 ~~G~~~W~~~ 277 (370)
T COG1520 268 DTGELIWSFP 277 (370)
T ss_pred CCCceEEEEe
Confidence 8888776655
No 500
>PRK13614 lipoprotein LpqB; Provisional
Probab=79.73 E-value=1.3e+02 Score=35.62 Aligned_cols=161 Identities=11% Similarity=0.125 Sum_probs=86.8
Q ss_pred CeeEEEEecCCCceEEEeeCCCcEEEEEeecceEE-EEecCcccCeeEEEEecCCCEEEEEcCCC--cEEEEeCCC-ccc
Q 001295 853 AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFSHALNVLVSSGADS--QLCVWSSDG-WEK 928 (1106)
Q Consensus 853 ~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~-~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg--~i~vwd~~~-~~~ 928 (1106)
.+.+.+.++ ++..+|....|+. .+|-...+... ..+.+ ..++.-.|.++| ++-++..+. .|....-.. ++.
T Consensus 344 ~~~s~avS~-~g~~~A~~~~~~~-~l~~~~~g~~~~~~~~g--~~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~ 418 (573)
T PRK13614 344 GPASPAESP-VSQTVAFLNGSRT-TLYTVSPGQPARALTSG--STLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEG 418 (573)
T ss_pred cccceeecC-CCceEEEecCCCc-EEEEecCCCcceeeecC--CCccCCcccCCC-CEEEeeCCCCceEEEEecCCCccc
Confidence 678899999 8888888777762 33432223322 23333 246777888887 555554433 444443221 111
Q ss_pred ccceeecccCCCCCCCCCCceEEEcCCCcEEEEE--eCCe--EEEEec---CCceEeee--cccCCCCCCeeEEEECCCC
Q 001295 929 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQ--LAIFET---TKLECVKQ--WVPRESSAPITHATFSCDS 999 (1106)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~d~~--v~i~d~---~~~~~~~~--~~~~~h~~~v~~l~~s~d~ 999 (1106)
........... -.....|..+..|+||..+++- .++. |.|--+ ..+..... ...-.+...+.++.|..++
T Consensus 419 ~~~~~~~v~~~-~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~ 497 (573)
T PRK13614 419 AQAPTVTLTAD-WLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDS 497 (573)
T ss_pred ccccceeeccc-ccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCC
Confidence 00000000000 0001248999999999999882 4665 665433 23431111 1111224688999999999
Q ss_pred CEEEEEE---cCCeEEEEEcCCc
Q 001295 1000 QLVYACF---LDATVCVFSAANL 1019 (1106)
Q Consensus 1000 ~~l~t~s---~Dg~i~vwd~~~~ 1019 (1106)
.+++.+. .+..+++..+..+
T Consensus 498 sl~V~~~~~~~~~~~~~v~v~~g 520 (573)
T PRK13614 498 TVVVTKASATSNVVPELLSVDAG 520 (573)
T ss_pred EEEEEeccCCCcceEEEEEeCCC
Confidence 8877654 2345666676544
Done!