Query 001295
Match_columns 1106
No_of_seqs 845 out of 4316
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 20:48:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001295.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001295hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 5.3E-67 1.8E-71 632.4 73.1 566 344-1068 10-577 (577)
2 1nr0_A Actin interacting prote 100.0 9E-66 3.1E-70 621.4 66.2 578 349-1070 17-610 (611)
3 2ymu_A WD-40 repeat protein; u 100.0 2.6E-61 9E-66 582.6 65.3 563 297-1015 7-577 (577)
4 1nr0_A Actin interacting prote 100.0 3.5E-61 1.2E-65 581.3 65.7 537 346-1017 55-610 (611)
5 3sfz_A APAF-1, apoptotic pepti 100.0 3E-61 1E-65 635.9 61.7 595 346-1070 611-1248(1249)
6 1pgu_A Actin interacting prote 100.0 1.3E-58 4.5E-63 564.2 59.5 560 348-1071 16-614 (615)
7 3sfz_A APAF-1, apoptotic pepti 100.0 4.8E-57 1.6E-61 595.8 61.6 568 407-1074 610-1210(1249)
8 2oaj_A Protein SNI1; WD40 repe 100.0 3.7E-56 1.3E-60 555.5 64.6 628 343-1060 10-818 (902)
9 1pgu_A Actin interacting prote 100.0 6.7E-55 2.3E-59 531.4 60.9 523 342-1018 55-614 (615)
10 2oaj_A Protein SNI1; WD40 repe 100.0 2.4E-54 8.2E-59 539.2 55.4 593 408-1080 13-794 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 3.3E-46 1.1E-50 470.5 57.6 465 347-1014 10-501 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 3E-44 1E-48 452.6 50.6 466 407-1068 8-502 (814)
13 1vyh_C Platelet-activating fac 100.0 3.7E-44 1.3E-48 409.8 39.8 305 347-772 105-409 (410)
14 1vyh_C Platelet-activating fac 100.0 6.1E-40 2.1E-44 374.9 38.7 306 408-924 104-410 (410)
15 1got_B GT-beta; complex (GTP-b 100.0 7.1E-39 2.4E-43 356.5 42.0 294 341-771 45-340 (340)
16 2pbi_B Guanine nucleotide-bind 100.0 7.5E-39 2.6E-43 357.9 42.1 296 342-771 55-354 (354)
17 3ow8_A WD repeat-containing pr 100.0 8.1E-39 2.8E-43 351.9 39.4 287 452-924 27-320 (321)
18 3ow8_A WD repeat-containing pr 100.0 1.9E-38 6.6E-43 348.9 40.6 287 408-881 28-319 (321)
19 1r5m_A SIR4-interacting protei 100.0 1.4E-38 4.7E-43 367.9 39.7 339 409-924 42-424 (425)
20 1got_B GT-beta; complex (GTP-b 100.0 6E-38 2E-42 349.0 40.4 286 450-922 48-340 (340)
21 3frx_A Guanine nucleotide-bind 100.0 6.4E-38 2.2E-42 345.1 39.7 303 344-774 10-317 (319)
22 2ynn_A Coatomer subunit beta'; 100.0 1E-37 3.4E-42 341.1 39.3 252 344-642 6-260 (304)
23 4g56_B MGC81050 protein; prote 100.0 2.8E-38 9.5E-43 353.5 34.9 319 708-1073 18-345 (357)
24 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.4E-37 4.6E-42 346.8 39.4 208 407-641 10-225 (345)
25 2ynn_A Coatomer subunit beta'; 100.0 2.2E-37 7.6E-42 338.4 39.9 289 451-925 7-302 (304)
26 4g56_B MGC81050 protein; prote 100.0 1.8E-38 6.3E-43 354.9 31.7 322 354-884 9-344 (357)
27 3iz6_a 40S ribosomal protein R 100.0 3.1E-38 1.1E-42 357.1 33.5 299 407-885 61-377 (380)
28 3iz6_a 40S ribosomal protein R 100.0 6.7E-38 2.3E-42 354.4 36.1 302 342-773 57-374 (380)
29 4gqb_B Methylosome protein 50; 100.0 5.5E-38 1.9E-42 347.6 34.0 295 742-1073 29-333 (344)
30 3frx_A Guanine nucleotide-bind 100.0 4.9E-37 1.7E-41 338.1 41.1 214 407-642 12-228 (319)
31 1r5m_A SIR4-interacting protei 100.0 2.8E-37 9.6E-42 356.9 39.9 365 344-882 39-424 (425)
32 2pm9_A Protein WEB1, protein t 100.0 6.6E-39 2.3E-43 369.4 25.9 332 413-925 13-414 (416)
33 2pbi_B Guanine nucleotide-bind 100.0 1.1E-36 3.8E-41 340.3 42.0 289 407-880 59-354 (354)
34 4gqb_B Methylosome protein 50; 100.0 1.6E-37 5.5E-42 343.9 34.2 257 349-642 29-290 (344)
35 2xzm_R RACK1; ribosome, transl 100.0 2.1E-36 7.1E-41 337.2 40.2 216 407-641 16-244 (343)
36 3vl1_A 26S proteasome regulato 100.0 6.2E-37 2.1E-41 353.3 35.5 263 351-642 57-323 (420)
37 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.1E-36 3.7E-41 339.5 36.1 301 741-1074 13-338 (345)
38 1gxr_A ESG1, transducin-like e 100.0 2.8E-36 9.6E-41 336.3 38.6 324 349-882 8-336 (337)
39 4ery_A WD repeat-containing pr 100.0 1.3E-35 4.3E-40 326.7 43.2 248 347-642 20-269 (312)
40 1erj_A Transcriptional repress 100.0 7E-36 2.4E-40 339.6 40.8 303 410-925 62-389 (393)
41 2pm9_A Protein WEB1, protein t 100.0 4.6E-38 1.6E-42 362.4 22.9 366 349-884 11-415 (416)
42 4ery_A WD repeat-containing pr 100.0 1.4E-35 4.9E-40 326.2 41.0 291 450-924 16-311 (312)
43 2j04_B YDR362CP, TAU91; beta p 100.0 2.6E-37 9E-42 359.1 28.5 235 340-642 123-387 (524)
44 1k32_A Tricorn protease; prote 100.0 9.9E-35 3.4E-39 372.6 55.0 526 349-1073 13-639 (1045)
45 3vl1_A 26S proteasome regulato 100.0 3.9E-36 1.3E-40 346.6 35.2 346 413-925 57-419 (420)
46 1erj_A Transcriptional repress 100.0 1.8E-35 6.3E-40 336.1 39.8 275 342-642 56-342 (393)
47 1gxr_A ESG1, transducin-like e 100.0 7.2E-36 2.4E-40 333.0 35.0 320 411-923 8-335 (337)
48 2xzm_R RACK1; ribosome, transl 100.0 9.1E-35 3.1E-39 324.0 41.9 254 344-642 14-286 (343)
49 2hes_X YDR267CP; beta-propelle 100.0 3.1E-35 1.1E-39 325.4 37.8 253 347-642 11-281 (330)
50 3gre_A Serine/threonine-protei 100.0 1.3E-36 4.3E-41 352.5 26.1 373 357-922 34-437 (437)
51 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.1E-34 3.7E-39 336.7 42.3 317 407-925 113-442 (445)
52 2hes_X YDR267CP; beta-propelle 100.0 4.2E-35 1.4E-39 324.3 36.8 291 741-1071 12-328 (330)
53 3v7d_B Cell division control p 100.0 1.1E-34 3.9E-39 338.9 42.2 341 407-922 116-460 (464)
54 4aow_A Guanine nucleotide-bind 100.0 9.6E-35 3.3E-39 324.4 38.5 308 342-775 29-338 (340)
55 4aow_A Guanine nucleotide-bind 100.0 2.1E-34 7.3E-39 321.5 41.0 211 407-642 33-247 (340)
56 1k32_A Tricorn protease; prote 100.0 7.7E-34 2.6E-38 364.3 50.7 493 341-1020 43-639 (1045)
57 3gre_A Serine/threonine-protei 100.0 4.3E-36 1.5E-40 348.0 25.3 382 419-1015 34-437 (437)
58 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6.8E-34 2.3E-38 330.0 43.7 319 346-883 114-442 (445)
59 3v7d_B Cell division control p 100.0 1.5E-33 5.3E-38 329.4 43.9 319 345-881 116-461 (464)
60 2j04_B YDR362CP, TAU91; beta p 100.0 9.8E-36 3.4E-40 345.9 24.6 354 545-1018 133-517 (524)
61 3zwl_B Eukaryotic translation 100.0 6.9E-34 2.4E-38 321.4 37.4 302 407-927 27-348 (369)
62 3dm0_A Maltose-binding peripla 100.0 3.6E-34 1.2E-38 351.7 37.4 252 347-642 379-633 (694)
63 3k26_A Polycomb protein EED; W 100.0 6.5E-35 2.2E-39 329.5 26.3 318 407-925 13-366 (366)
64 4a11_B DNA excision repair pro 100.0 1.5E-33 5E-38 323.7 36.8 356 372-925 22-405 (408)
65 4e54_B DNA damage-binding prot 100.0 5.2E-34 1.8E-38 329.2 31.0 240 347-629 116-363 (435)
66 1sq9_A Antiviral protein SKI8; 100.0 2.6E-33 8.8E-38 320.3 36.2 299 450-926 9-396 (397)
67 4a11_B DNA excision repair pro 100.0 1.7E-33 5.7E-38 323.2 33.7 361 587-1071 22-405 (408)
68 3dm0_A Maltose-binding peripla 100.0 4.8E-33 1.6E-37 341.7 39.4 211 407-642 377-593 (694)
69 3zwl_B Eukaryotic translation 100.0 2.6E-32 8.8E-37 308.5 41.8 307 340-775 22-347 (369)
70 3i2n_A WD repeat-containing pr 100.0 7.4E-33 2.5E-37 311.4 35.3 299 452-926 13-354 (357)
71 2pm7_B Protein transport prote 100.0 9.3E-33 3.2E-37 300.6 34.4 254 347-641 6-285 (297)
72 3ei3_B DNA damage-binding prot 100.0 7.8E-33 2.7E-37 314.3 34.4 249 347-642 70-340 (383)
73 3ei3_B DNA damage-binding prot 100.0 8.1E-33 2.8E-37 314.2 34.0 308 592-1018 57-382 (383)
74 4e54_B DNA damage-binding prot 100.0 8.3E-34 2.8E-38 327.5 26.2 311 408-887 115-434 (435)
75 3i2n_A WD repeat-containing pr 100.0 1.8E-32 6.1E-37 308.3 35.9 322 407-886 13-356 (357)
76 3k26_A Polycomb protein EED; W 100.0 1.6E-32 5.6E-37 309.8 35.0 310 348-773 16-365 (366)
77 1k8k_C P40, ARP2/3 complex 41 100.0 1.8E-32 6.1E-37 310.3 35.2 244 349-641 7-274 (372)
78 1sq9_A Antiviral protein SKI8; 100.0 1.2E-32 4.2E-37 314.6 33.6 253 345-649 10-329 (397)
79 1k8k_C P40, ARP2/3 complex 41 100.0 1.5E-32 5E-37 311.0 33.8 324 408-885 4-363 (372)
80 2j04_A TAU60, YPL007P, hypothe 100.0 4.8E-34 1.6E-38 319.6 20.8 327 455-1006 13-349 (588)
81 3odt_A Protein DOA1; ubiquitin 100.0 6.5E-32 2.2E-36 297.4 36.7 246 342-642 9-256 (313)
82 4h5i_A Guanine nucleotide-exch 100.0 8.5E-33 2.9E-37 309.8 29.4 294 457-926 14-344 (365)
83 3dwl_C Actin-related protein 2 100.0 1.4E-33 4.7E-38 320.0 22.7 257 349-640 10-280 (377)
84 2j04_A TAU60, YPL007P, hypothe 100.0 8.5E-34 2.9E-38 317.6 19.9 314 349-871 14-349 (588)
85 4h5i_A Guanine nucleotide-exch 100.0 3.1E-32 1.1E-36 305.2 32.8 203 809-1019 132-344 (365)
86 4aez_A CDC20, WD repeat-contai 100.0 1.3E-31 4.4E-36 305.8 38.2 295 340-774 81-380 (401)
87 3odt_A Protein DOA1; ubiquitin 100.0 2E-31 6.7E-36 293.5 37.9 285 449-928 10-299 (313)
88 3dwl_C Actin-related protein 2 100.0 7.4E-33 2.5E-37 313.9 25.4 245 742-1017 10-280 (377)
89 4gga_A P55CDC, cell division c 100.0 4E-31 1.4E-35 303.7 39.0 299 414-904 107-416 (420)
90 4ggc_A P55CDC, cell division c 100.0 8.8E-31 3E-35 289.1 38.8 283 414-925 27-315 (318)
91 4gga_A P55CDC, cell division c 100.0 1.1E-30 3.9E-35 299.9 40.7 280 351-773 106-394 (420)
92 2pm7_B Protein transport prote 100.0 3.2E-31 1.1E-35 288.4 33.5 248 808-1071 7-285 (297)
93 4aez_A CDC20, WD repeat-contai 100.0 4E-31 1.4E-35 301.7 34.8 290 409-891 88-388 (401)
94 3bg1_A Protein SEC13 homolog; 100.0 8.6E-32 2.9E-36 295.7 25.8 226 407-642 8-248 (316)
95 3dw8_B Serine/threonine-protei 100.0 8.5E-31 2.9E-35 304.7 34.6 273 347-642 25-374 (447)
96 3f3f_A Nucleoporin SEH1; struc 100.0 1.7E-30 5.8E-35 291.0 34.2 226 407-642 6-250 (351)
97 3bg1_A Protein SEC13 homolog; 100.0 2.1E-31 7.2E-36 292.6 26.1 246 808-1071 11-293 (316)
98 1p22_A F-BOX/WD-repeat protein 100.0 5.8E-30 2E-34 295.6 36.0 233 348-642 131-366 (435)
99 3mmy_A MRNA export factor; mRN 100.0 5.1E-30 1.8E-34 289.5 34.0 300 407-881 34-344 (368)
100 4ggc_A P55CDC, cell division c 100.0 1.9E-29 6.6E-34 278.3 37.8 282 746-1073 28-317 (318)
101 1yfq_A Cell cycle arrest prote 100.0 4.2E-30 1.4E-34 286.9 32.9 294 407-880 6-321 (342)
102 1yfq_A Cell cycle arrest prote 100.0 2.6E-30 9.1E-35 288.6 30.1 245 348-642 9-283 (342)
103 1p22_A F-BOX/WD-repeat protein 100.0 6.9E-30 2.3E-34 295.0 34.0 275 453-927 129-416 (435)
104 3jrp_A Fusion protein of prote 100.0 5.8E-30 2E-34 290.4 32.4 254 348-642 9-288 (379)
105 3mmy_A MRNA export factor; mRN 100.0 8.5E-30 2.9E-34 287.7 32.4 256 340-642 28-305 (368)
106 3dw8_B Serine/threonine-protei 100.0 1.2E-29 4E-34 295.1 34.3 304 742-1069 27-444 (447)
107 2aq5_A Coronin-1A; WD40 repeat 100.0 3.7E-30 1.3E-34 294.1 29.5 252 351-642 35-300 (402)
108 3f3f_A Nucleoporin SEH1; struc 100.0 1.7E-29 5.8E-34 282.9 31.4 260 346-642 7-338 (351)
109 2aq5_A Coronin-1A; WD40 repeat 100.0 4.5E-29 1.5E-33 285.1 31.6 287 747-1073 38-344 (402)
110 3jrp_A Fusion protein of prote 100.0 7.4E-29 2.5E-33 281.3 31.3 250 809-1073 10-289 (379)
111 2w18_A PALB2, fancn, partner a 100.0 5.5E-28 1.9E-32 253.8 34.6 293 460-923 42-355 (356)
112 2xyi_A Probable histone-bindin 100.0 1.2E-28 4.1E-33 283.6 31.6 267 343-642 121-411 (430)
113 3bws_A Protein LP49; two-domai 100.0 7.1E-28 2.4E-32 278.6 36.9 356 349-925 26-432 (433)
114 1l0q_A Surface layer protein; 100.0 5.6E-27 1.9E-31 267.0 40.1 329 425-961 3-364 (391)
115 1l0q_A Surface layer protein; 100.0 5E-27 1.7E-31 267.4 39.6 227 363-642 2-234 (391)
116 2vdu_B TRNA (guanine-N(7)-)-me 100.0 9.6E-28 3.3E-32 278.3 33.3 257 351-639 5-337 (450)
117 2w18_A PALB2, fancn, partner a 100.0 7.1E-28 2.4E-32 252.9 28.7 277 707-1070 54-356 (356)
118 3jro_A Fusion protein of prote 100.0 2.2E-28 7.4E-33 301.5 27.7 255 347-642 6-286 (753)
119 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.2E-27 7.6E-32 275.2 34.6 247 809-1077 101-397 (450)
120 4gq1_A NUP37; propeller, trans 100.0 4.6E-28 1.6E-32 274.7 28.0 348 350-882 15-388 (393)
121 3vu4_A KMHSV2; beta-propeller 100.0 2.5E-27 8.6E-32 264.5 33.1 297 408-841 15-337 (355)
122 4gq1_A NUP37; propeller, trans 100.0 2E-28 6.8E-33 277.8 23.7 267 348-639 87-387 (393)
123 3bws_A Protein LP49; two-domai 100.0 3.5E-27 1.2E-31 272.8 34.4 296 413-883 123-432 (433)
124 3vu4_A KMHSV2; beta-propeller 100.0 5.8E-27 2E-31 261.6 34.5 294 569-1020 22-338 (355)
125 3jro_A Fusion protein of prote 100.0 1.4E-27 4.6E-32 294.4 30.4 251 808-1073 7-287 (753)
126 3lrv_A PRE-mRNA-splicing facto 100.0 1.1E-27 3.9E-32 266.7 26.9 198 809-1019 124-334 (343)
127 2xyi_A Probable histone-bindin 100.0 1.5E-26 5E-31 266.2 33.3 212 407-642 123-354 (430)
128 3lrv_A PRE-mRNA-splicing facto 100.0 6E-27 2E-31 260.8 26.8 280 464-925 43-333 (343)
129 1nir_A Nitrite reductase; hemo 100.0 1.5E-25 5.2E-30 262.9 39.3 334 357-893 144-524 (543)
130 1nir_A Nitrite reductase; hemo 99.9 1.7E-25 5.7E-30 262.5 37.7 332 465-982 145-522 (543)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 6.9E-24 2.4E-28 241.6 28.0 302 457-906 62-409 (415)
132 2ecf_A Dipeptidyl peptidase IV 99.9 7.2E-23 2.5E-27 254.1 36.6 258 350-640 36-366 (741)
133 2hqs_A Protein TOLB; TOLB, PAL 99.9 2E-23 7E-28 237.7 27.6 242 350-642 62-345 (415)
134 2ecf_A Dipeptidyl peptidase IV 99.9 5.4E-23 1.8E-27 255.3 32.4 327 412-926 36-460 (741)
135 1xfd_A DIP, dipeptidyl aminope 99.9 2.5E-23 8.6E-28 257.6 27.5 235 351-642 17-290 (723)
136 2z3z_A Dipeptidyl aminopeptida 99.9 1.3E-21 4.5E-26 241.2 32.1 249 352-640 27-341 (706)
137 2z3z_A Dipeptidyl aminopeptida 99.9 2.2E-21 7.4E-26 239.3 33.4 284 743-1073 81-437 (706)
138 1ri6_A Putative isomerase YBHE 99.9 4.8E-21 1.7E-25 213.4 31.5 300 709-1050 8-333 (343)
139 1xfd_A DIP, dipeptidyl aminope 99.9 1.5E-21 5.1E-26 241.6 29.4 384 503-1025 18-450 (723)
140 1ri6_A Putative isomerase YBHE 99.9 9.3E-21 3.2E-25 211.1 31.4 248 809-1076 36-313 (343)
141 3u4y_A Uncharacterized protein 99.9 4.5E-20 1.5E-24 204.3 36.0 240 356-642 3-253 (331)
142 3u4y_A Uncharacterized protein 99.9 3.2E-20 1.1E-24 205.6 31.2 285 750-1073 4-306 (331)
143 3vgz_A Uncharacterized protein 99.9 1.3E-19 4.4E-24 202.7 35.1 273 743-1062 40-335 (353)
144 1pby_B Quinohemoprotein amine 99.9 2.3E-20 7.8E-25 207.3 27.7 267 756-1074 2-313 (337)
145 1pby_B Quinohemoprotein amine 99.9 4.6E-20 1.6E-24 204.9 29.3 181 830-1026 114-318 (337)
146 3vgz_A Uncharacterized protein 99.9 1.7E-19 5.8E-24 201.8 33.9 246 347-642 37-304 (353)
147 3hfq_A Uncharacterized protein 99.9 2.1E-19 7.2E-24 200.3 31.6 246 809-1071 38-317 (347)
148 2oit_A Nucleoporin 214KDA; NH2 99.8 1E-18 3.6E-23 199.1 35.6 315 743-1071 36-405 (434)
149 2ojh_A Uncharacterized protein 99.8 6.9E-20 2.4E-24 199.1 23.4 233 809-1062 40-293 (297)
150 3hfq_A Uncharacterized protein 99.8 7E-19 2.4E-23 196.1 31.0 278 714-1022 14-323 (347)
151 1z68_A Fibroblast activation p 99.8 2.9E-19 1E-23 220.6 29.0 286 745-1073 61-445 (719)
152 2ojh_A Uncharacterized protein 99.8 3.1E-19 1.1E-23 193.9 25.7 243 340-632 31-293 (297)
153 2oit_A Nucleoporin 214KDA; NH2 99.8 1.7E-18 5.9E-23 197.4 32.1 259 350-640 36-332 (434)
154 1z68_A Fibroblast activation p 99.8 3.6E-19 1.2E-23 219.8 28.1 334 572-1026 21-451 (719)
155 1jmx_B Amine dehydrogenase; ox 99.8 1E-18 3.6E-23 195.0 26.7 237 815-1074 4-328 (349)
156 4a5s_A Dipeptidyl peptidase 4 99.8 7.8E-18 2.7E-22 207.4 35.4 233 351-642 17-295 (740)
157 3o4h_A Acylamino-acid-releasin 99.8 2E-18 6.9E-23 207.1 26.8 234 349-639 20-274 (582)
158 3o4h_A Acylamino-acid-releasin 99.8 1.5E-18 5.2E-23 208.1 25.5 271 456-925 20-315 (582)
159 4a5s_A Dipeptidyl peptidase 4 99.8 8.5E-17 2.9E-21 198.2 39.6 328 571-1026 21-457 (740)
160 3scy_A Hypothetical bacterial 99.8 4.6E-17 1.6E-21 182.4 33.9 275 713-1023 24-344 (361)
161 3scy_A Hypothetical bacterial 99.8 9.1E-17 3.1E-21 180.0 36.3 230 745-996 101-360 (361)
162 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.2E-17 4E-22 187.1 28.5 251 810-1072 39-342 (365)
163 1jmx_B Amine dehydrogenase; ox 99.8 1.4E-17 4.7E-22 185.8 27.6 304 462-893 4-335 (349)
164 2oiz_A Aromatic amine dehydrog 99.8 3E-16 1E-20 174.4 30.0 221 812-1053 109-360 (361)
165 1jof_A Carboxy-CIS,CIS-muconat 99.7 1.6E-16 5.6E-21 177.8 26.8 251 744-1020 40-343 (365)
166 3pe7_A Oligogalacturonate lyas 99.7 2.9E-16 1E-20 177.9 28.4 207 408-642 26-274 (388)
167 3pe7_A Oligogalacturonate lyas 99.7 3E-16 1E-20 177.9 27.6 250 345-642 25-330 (388)
168 2oiz_A Aromatic amine dehydrog 99.7 4.2E-15 1.4E-19 165.2 31.0 304 479-907 29-360 (361)
169 3fvz_A Peptidyl-glycine alpha- 99.7 4.6E-15 1.6E-19 163.1 26.3 251 810-1072 23-323 (329)
170 3fvz_A Peptidyl-glycine alpha- 99.7 1.6E-14 5.4E-19 158.8 30.4 250 351-641 24-322 (329)
171 1qks_A Cytochrome CD1 nitrite 99.7 1.2E-13 4.1E-18 160.9 38.5 341 512-982 164-546 (567)
172 3c5m_A Oligogalacturonate lyas 99.7 2.3E-15 7.8E-20 171.1 23.6 298 414-886 37-387 (396)
173 1q7f_A NHL, brain tumor CG1071 99.7 2.1E-14 7.1E-19 154.7 29.8 243 809-1072 28-281 (286)
174 1qks_A Cytochrome CD1 nitrite 99.7 1.4E-13 4.8E-18 160.3 38.7 330 580-1026 169-546 (567)
175 3c5m_A Oligogalacturonate lyas 99.7 3.2E-15 1.1E-19 169.9 22.1 238 353-642 38-330 (396)
176 3azo_A Aminopeptidase; POP fam 99.7 8.4E-15 2.9E-19 178.8 26.6 335 452-923 18-409 (662)
177 3azo_A Aminopeptidase; POP fam 99.6 1.7E-14 5.8E-19 176.1 28.0 243 346-639 19-321 (662)
178 1q7f_A NHL, brain tumor CG1071 99.6 1.7E-13 5.7E-18 147.5 32.7 249 349-642 28-281 (286)
179 4a2l_A BT_4663, two-component 99.6 1.8E-10 6.1E-15 143.0 63.2 545 350-1071 87-659 (795)
180 4a2l_A BT_4663, two-component 99.6 3E-10 1E-14 140.9 62.9 545 350-1073 42-616 (795)
181 2gop_A Trilobed protease; beta 99.6 1.3E-13 4.6E-18 153.1 27.9 220 812-1070 60-330 (347)
182 3e5z_A Putative gluconolactona 99.6 5.6E-13 1.9E-17 144.2 28.9 243 345-642 22-287 (296)
183 2dg1_A DRP35, lactonase; beta 99.6 6E-13 2E-17 146.9 27.8 283 744-1071 6-314 (333)
184 2gop_A Trilobed protease; beta 99.6 3.3E-13 1.1E-17 150.0 25.8 221 351-641 15-291 (347)
185 3dsm_A Uncharacterized protein 99.6 8.9E-13 3E-17 144.4 28.0 238 811-1073 44-303 (328)
186 2xdw_A Prolyl endopeptidase; a 99.5 7.3E-13 2.5E-17 162.3 29.5 246 349-642 123-415 (710)
187 3e5z_A Putative gluconolactona 99.5 1.5E-12 5E-17 140.9 28.2 238 743-1022 27-290 (296)
188 3no2_A Uncharacterized protein 99.5 7.3E-13 2.5E-17 140.3 25.1 253 821-1089 4-270 (276)
189 3v9f_A Two-component system se 99.5 1.2E-08 4E-13 126.4 65.9 606 350-1071 18-656 (781)
190 2z2n_A Virginiamycin B lyase; 99.5 2.5E-11 8.6E-16 131.4 36.9 281 742-1073 13-297 (299)
191 3sjl_D Methylamine dehydrogena 99.5 9.8E-12 3.4E-16 134.9 32.9 204 813-1026 139-371 (386)
192 3dsm_A Uncharacterized protein 99.5 2.1E-12 7.1E-17 141.5 27.7 274 713-1026 14-309 (328)
193 2xdw_A Prolyl endopeptidase; a 99.5 3.3E-12 1.1E-16 156.5 32.5 245 742-1020 123-416 (710)
194 2mad_H Methylamine dehydrogena 99.5 5.3E-11 1.8E-15 131.9 38.5 203 814-1025 128-357 (373)
195 2bkl_A Prolyl endopeptidase; m 99.5 3.1E-13 1.1E-17 165.1 21.6 241 809-1073 119-399 (695)
196 2z2n_A Virginiamycin B lyase; 99.5 5.1E-11 1.7E-15 129.0 36.7 237 744-1020 57-297 (299)
197 2dg1_A DRP35, lactonase; beta 99.5 2.1E-11 7.2E-16 134.4 33.8 244 347-631 41-300 (333)
198 1rwi_B Serine/threonine-protei 99.5 2.9E-12 9.9E-17 136.5 26.0 238 812-1073 25-266 (270)
199 3sjl_D Methylamine dehydrogena 99.5 3.9E-12 1.3E-16 138.0 26.1 277 750-1073 39-365 (386)
200 2bkl_A Prolyl endopeptidase; m 99.5 1.4E-12 4.7E-17 159.4 24.8 245 349-642 119-398 (695)
201 1rwi_B Serine/threonine-protei 99.5 5.5E-12 1.9E-16 134.3 25.7 239 352-642 25-265 (270)
202 3v9f_A Two-component system se 99.5 2.6E-08 9E-13 123.2 60.9 509 351-1017 115-655 (781)
203 2mad_H Methylamine dehydrogena 99.5 8.6E-11 2.9E-15 130.1 34.3 237 815-1073 70-352 (373)
204 3no2_A Uncharacterized protein 99.4 1E-11 3.5E-16 131.5 24.1 212 365-629 7-231 (276)
205 3c75_H MADH, methylamine dehyd 99.4 3.9E-11 1.3E-15 133.0 27.2 205 814-1025 180-409 (426)
206 2qc5_A Streptogramin B lactona 99.4 9.6E-10 3.3E-14 118.9 35.0 278 742-1070 18-299 (300)
207 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.7E-10 6E-15 125.8 29.1 256 348-641 15-299 (314)
208 1yr2_A Prolyl oligopeptidase; 99.4 3.3E-11 1.1E-15 148.2 25.7 281 704-1021 116-444 (741)
209 1yr2_A Prolyl oligopeptidase; 99.4 1.8E-11 6E-16 150.6 22.9 245 349-642 161-442 (741)
210 2qc5_A Streptogramin B lactona 99.4 2.5E-09 8.5E-14 115.6 36.6 238 349-639 18-258 (300)
211 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.2E-10 4.2E-15 127.0 26.1 245 744-1018 18-299 (314)
212 3c75_H MADH, methylamine dehyd 99.3 2.3E-10 7.7E-15 126.9 24.7 239 815-1073 122-404 (426)
213 3hrp_A Uncharacterized protein 99.3 7.4E-10 2.5E-14 124.6 28.4 248 811-1069 131-408 (409)
214 3hrp_A Uncharacterized protein 99.3 1.3E-09 4.4E-14 122.6 30.2 255 351-639 131-408 (409)
215 3dr2_A Exported gluconolactona 99.3 7.6E-10 2.6E-14 119.8 26.6 240 344-635 38-301 (305)
216 3g4e_A Regucalcin; six bladed 99.3 1.6E-09 5.5E-14 116.7 28.5 237 350-630 12-261 (297)
217 3g4e_A Regucalcin; six bladed 99.3 8.6E-10 2.9E-14 118.8 25.7 228 745-1007 14-261 (297)
218 2qe8_A Uncharacterized protein 99.3 1.3E-10 4.6E-15 128.0 19.7 270 744-1064 17-314 (343)
219 1xip_A Nucleoporin NUP159; bet 99.2 1.1E-10 3.8E-15 127.4 17.7 173 811-1004 38-230 (388)
220 1mda_H Methylamine dehydrogena 99.2 2.5E-10 8.6E-15 124.5 19.0 198 814-1026 127-354 (368)
221 3iuj_A Prolyl endopeptidase; h 99.2 1.1E-09 3.8E-14 133.1 26.4 245 349-642 127-406 (693)
222 4a0p_A LRP6, LRP-6, low-densit 99.2 2.5E-05 8.5E-10 92.1 65.0 526 364-1073 8-551 (628)
223 2qe8_A Uncharacterized protein 99.2 1.2E-09 4E-14 120.4 23.4 248 351-631 17-311 (343)
224 2ghs_A AGR_C_1268P; regucalcin 99.2 5.7E-09 1.9E-13 113.9 28.5 228 352-631 50-292 (326)
225 1xip_A Nucleoporin NUP159; bet 99.2 2.9E-10 1E-14 124.1 17.4 177 414-629 39-232 (388)
226 2ghs_A AGR_C_1268P; regucalcin 99.2 7.6E-09 2.6E-13 112.9 28.4 225 746-1008 51-292 (326)
227 1kb0_A Quinohemoprotein alcoho 99.2 1E-08 3.4E-13 123.2 31.4 203 855-1071 246-567 (677)
228 1kb0_A Quinohemoprotein alcoho 99.2 4.3E-09 1.5E-13 126.3 27.5 80 831-912 457-537 (677)
229 3iuj_A Prolyl endopeptidase; h 99.1 5.7E-09 1.9E-13 126.8 27.7 242 742-1022 127-409 (693)
230 3dr2_A Exported gluconolactona 99.1 7.7E-09 2.6E-13 111.8 25.8 229 743-1012 44-301 (305)
231 3q7m_A Lipoprotein YFGL, BAMB; 99.1 3.4E-08 1.2E-12 110.5 31.8 158 423-606 52-216 (376)
232 3s94_A LRP-6, low-density lipo 99.1 2.6E-05 8.8E-10 91.9 56.8 503 412-1073 39-553 (619)
233 1yiq_A Quinohemoprotein alcoho 99.1 7.3E-09 2.5E-13 124.7 26.9 79 831-911 455-534 (689)
234 1yiq_A Quinohemoprotein alcoho 99.1 1.9E-08 6.5E-13 121.0 29.3 187 856-1056 239-533 (689)
235 2ece_A 462AA long hypothetical 99.1 4.8E-08 1.6E-12 106.3 28.5 238 753-1006 93-399 (462)
236 2ece_A 462AA long hypothetical 99.1 4.2E-08 1.4E-12 106.7 27.7 230 820-1059 93-399 (462)
237 1mda_H Methylamine dehydrogena 99.0 7.3E-09 2.5E-13 113.0 20.5 249 364-650 33-354 (368)
238 3s94_A LRP-6, low-density lipo 99.0 5.5E-05 1.9E-09 89.1 54.2 198 811-1020 349-553 (619)
239 3hxj_A Pyrrolo-quinoline quino 99.0 8.5E-09 2.9E-13 113.1 20.1 177 418-638 25-201 (330)
240 4a0p_A LRP6, LRP-6, low-densit 99.0 0.00018 6.2E-09 84.8 58.4 505 349-1025 35-556 (628)
241 3hxj_A Pyrrolo-quinoline quino 98.9 4.4E-08 1.5E-12 107.4 22.0 218 355-638 24-241 (330)
242 3q7m_A Lipoprotein YFGL, BAMB; 98.9 3.2E-07 1.1E-11 102.6 28.1 235 822-1079 103-345 (376)
243 1fwx_A Nitrous oxide reductase 98.9 2.7E-07 9.4E-12 104.2 26.3 329 472-927 16-433 (595)
244 1fwx_A Nitrous oxide reductase 98.9 5.3E-08 1.8E-12 109.9 20.4 237 820-1073 99-433 (595)
245 2hz6_A Endoplasmic reticulum t 98.9 6.3E-10 2.2E-14 123.5 4.6 190 863-1079 8-200 (369)
246 2hz6_A Endoplasmic reticulum t 98.9 4.7E-10 1.6E-14 124.5 3.4 186 821-1026 8-200 (369)
247 1kv9_A Type II quinohemoprotei 98.8 4.6E-06 1.6E-10 99.9 33.1 167 856-1026 234-496 (668)
248 2iwa_A Glutamine cyclotransfer 98.8 7.7E-07 2.6E-11 91.2 22.1 216 842-1073 10-239 (266)
249 2iwa_A Glutamine cyclotransfer 98.8 8.6E-07 2.9E-11 90.8 22.2 200 812-1019 22-238 (266)
250 1kv9_A Type II quinohemoprotei 98.8 3.9E-06 1.3E-10 100.6 31.6 81 873-961 437-517 (668)
251 3ei3_A DNA damage-binding prot 98.7 0.00082 2.8E-08 84.7 52.4 224 824-1071 708-999 (1158)
252 1npe_A Nidogen, entactin; glyc 98.7 9.5E-06 3.2E-10 85.3 29.7 202 812-1026 37-246 (267)
253 3ott_A Two-component system se 98.7 0.0026 8.8E-08 78.0 63.0 533 350-1071 62-626 (758)
254 2ad6_A Methanol dehydrogenase 98.7 1.4E-05 4.9E-10 93.5 31.7 196 815-1026 239-502 (571)
255 3nol_A Glutamine cyclotransfer 98.6 1.1E-06 3.8E-11 88.5 18.4 201 842-1058 32-243 (262)
256 1w6s_A Methanol dehydrogenase 98.6 1.4E-05 5E-10 93.2 30.5 166 856-1026 245-511 (599)
257 3nol_A Glutamine cyclotransfer 98.6 2.1E-06 7.1E-11 86.6 20.1 187 812-1007 44-244 (262)
258 3nok_A Glutaminyl cyclase; bet 98.6 6.9E-07 2.4E-11 89.9 16.4 196 843-1058 45-253 (268)
259 2ad6_A Methanol dehydrogenase 98.6 1.7E-05 5.9E-10 92.8 31.2 83 872-962 442-524 (571)
260 3nok_A Glutaminyl cyclase; bet 98.6 2.6E-06 9E-11 85.7 19.6 184 811-1006 55-253 (268)
261 1flg_A Protein (quinoprotein e 98.5 0.00022 7.5E-09 83.5 37.3 397 424-911 68-545 (582)
262 3ei3_A DNA damage-binding prot 98.5 0.0084 2.9E-07 75.6 58.7 215 787-1016 807-1060(1158)
263 1npe_A Nidogen, entactin; glyc 98.5 0.00011 3.8E-09 77.0 30.5 223 351-623 36-263 (267)
264 1w6s_A Methanol dehydrogenase 98.5 0.00015 5E-09 84.7 33.8 82 872-961 451-532 (599)
265 2fp8_A Strictosidine synthase; 98.5 5.7E-05 2E-09 81.9 28.3 238 812-1073 20-315 (322)
266 3mbr_X Glutamine cyclotransfer 98.5 1.1E-05 3.9E-10 80.6 20.4 201 842-1058 10-222 (243)
267 3mbr_X Glutamine cyclotransfer 98.5 2.2E-05 7.6E-10 78.5 22.5 187 810-1006 20-222 (243)
268 1flg_A Protein (quinoprotein e 98.5 0.00017 5.7E-09 84.5 33.6 150 874-1026 291-524 (582)
269 2p4o_A Hypothetical protein; p 98.4 0.00013 4.5E-09 78.3 29.7 246 337-631 18-278 (306)
270 2fp8_A Strictosidine synthase; 98.4 0.0001 3.5E-09 79.8 27.4 253 351-641 19-313 (322)
271 2p4o_A Hypothetical protein; p 98.4 0.00018 6.2E-09 77.1 28.8 226 744-1009 32-279 (306)
272 2xbg_A YCF48-like protein; pho 98.4 0.0013 4.6E-08 70.9 35.4 277 743-1068 35-319 (327)
273 2xe4_A Oligopeptidase B; hydro 98.4 4.4E-05 1.5E-09 93.1 26.2 159 352-534 175-354 (751)
274 3qqz_A Putative uncharacterize 98.3 0.00028 9.6E-09 71.8 26.9 217 846-1067 21-249 (255)
275 2xe4_A Oligopeptidase B; hydro 98.3 4.8E-05 1.6E-09 92.8 24.3 193 812-1016 175-398 (751)
276 3qqz_A Putative uncharacterize 98.3 0.00054 1.9E-08 69.6 27.7 203 349-595 25-251 (255)
277 3ott_A Two-component system se 98.2 0.026 8.9E-07 69.0 55.8 494 412-1073 21-547 (758)
278 1k3i_A Galactose oxidase precu 98.2 0.00012 4.2E-09 87.9 25.1 238 811-1060 243-530 (656)
279 1ijq_A LDL receptor, low-densi 98.2 0.00091 3.1E-08 71.8 29.4 207 810-1026 29-246 (316)
280 3v64_C Agrin; beta propeller, 98.2 0.00087 3E-08 73.1 29.0 238 812-1073 35-277 (349)
281 3v64_C Agrin; beta propeller, 98.2 0.0015 5.1E-08 71.2 30.6 205 811-1026 73-283 (349)
282 4hw6_A Hypothetical protein, I 98.2 0.00051 1.8E-08 77.2 27.0 249 812-1070 140-432 (433)
283 3tc9_A Hypothetical hydrolase; 98.2 0.00051 1.7E-08 77.2 27.0 247 812-1070 138-429 (430)
284 3v65_B Low-density lipoprotein 98.1 0.00064 2.2E-08 75.3 27.0 206 810-1026 115-326 (386)
285 3p5b_L Low density lipoprotein 98.1 0.0018 6.3E-08 71.9 29.7 208 810-1026 111-328 (400)
286 2xbg_A YCF48-like protein; pho 98.1 0.007 2.4E-07 65.2 33.6 193 811-1015 122-319 (327)
287 3v65_B Low-density lipoprotein 98.1 0.002 7E-08 71.2 29.1 215 345-605 110-326 (386)
288 3p5b_L Low density lipoprotein 98.0 0.0027 9.3E-08 70.5 29.9 230 823-1073 84-322 (400)
289 1ijq_A LDL receptor, low-densi 98.0 0.0077 2.6E-07 64.5 32.5 224 372-642 9-239 (316)
290 1k3i_A Galactose oxidase precu 98.0 0.00031 1E-08 84.4 23.3 246 815-1073 190-499 (656)
291 3amr_A 3-phytase; beta-propell 98.0 0.0019 6.5E-08 68.0 24.6 197 821-1026 39-272 (355)
292 3tc9_A Hypothetical hydrolase; 97.9 0.0036 1.2E-07 70.2 27.6 256 351-640 137-429 (430)
293 3sov_A LRP-6, low-density lipo 97.9 0.0021 7.2E-08 68.7 24.5 228 824-1073 6-240 (318)
294 1n7d_A LDL receptor, low-densi 97.9 0.00014 4.9E-09 87.2 16.2 207 811-1026 406-622 (699)
295 4hw6_A Hypothetical protein, I 97.9 0.005 1.7E-07 69.1 27.8 253 351-640 139-432 (433)
296 3kya_A Putative phosphatase; s 97.8 0.0061 2.1E-07 68.3 27.4 253 812-1073 140-477 (496)
297 3kya_A Putative phosphatase; s 97.8 0.0052 1.8E-07 68.8 26.0 253 745-1022 140-479 (496)
298 3m0c_C LDL receptor, low-densi 97.8 0.0082 2.8E-07 72.3 29.5 208 810-1026 423-640 (791)
299 3sov_A LRP-6, low-density lipo 97.7 0.012 4.2E-07 62.7 27.3 209 351-605 35-246 (318)
300 2xzh_A Clathrin heavy chain 1; 97.6 0.083 2.9E-06 54.4 32.4 248 355-642 71-333 (365)
301 3amr_A 3-phytase; beta-propell 97.6 0.011 3.6E-07 62.4 23.1 189 865-1070 41-262 (355)
302 2xzh_A Clathrin heavy chain 1; 97.5 0.12 4E-06 53.3 29.3 95 831-926 227-333 (365)
303 3m0c_C LDL receptor, low-densi 97.5 0.057 1.9E-06 65.0 31.2 207 412-642 423-633 (791)
304 1bpo_A Protein (clathrin); cla 97.5 0.17 5.8E-06 54.3 30.7 248 355-642 70-332 (494)
305 1bpo_A Protein (clathrin); cla 97.5 0.18 6.2E-06 54.1 30.2 234 574-926 73-332 (494)
306 2p9w_A MAL S 1 allergenic prot 97.4 0.021 7.1E-07 59.6 21.8 202 811-1017 13-264 (334)
307 2ism_A Putative oxidoreductase 97.4 0.044 1.5E-06 59.5 25.6 231 812-1059 32-333 (352)
308 3a9g_A Putative uncharacterize 97.4 0.11 3.8E-06 56.2 28.7 231 811-1059 29-330 (354)
309 1n7d_A LDL receptor, low-densi 97.3 0.0016 5.6E-08 78.0 14.4 217 343-605 398-622 (699)
310 2g8s_A Glucose/sorbosone dehyd 97.2 0.064 2.2E-06 58.2 25.1 240 812-1070 19-351 (353)
311 2ism_A Putative oxidoreductase 97.2 0.17 5.9E-06 54.8 28.5 109 349-477 29-152 (352)
312 3a9g_A Putative uncharacterize 97.2 0.29 1E-05 52.9 30.3 110 349-478 27-153 (354)
313 3ii7_A Kelch-like protein 7; p 97.0 0.17 5.7E-06 53.7 25.8 228 823-1078 13-277 (306)
314 2p9w_A MAL S 1 allergenic prot 97.0 0.02 6.8E-07 59.8 17.2 168 893-1070 11-214 (334)
315 2vpj_A Kelch-like protein 12; 97.0 0.099 3.4E-06 55.3 23.1 232 821-1078 14-283 (301)
316 2xn4_A Kelch-like protein 2; s 96.9 0.17 5.8E-06 53.5 24.4 229 822-1078 16-281 (302)
317 2xtc_A F-box-like/WD repeat-co 96.9 0.00056 1.9E-08 54.5 3.4 36 1-36 1-36 (90)
318 3pbp_A Nucleoporin NUP82; beta 96.8 0.068 2.3E-06 57.4 19.3 108 816-925 26-158 (452)
319 2vpj_A Kelch-like protein 12; 96.6 0.22 7.4E-06 52.6 22.2 188 820-1022 61-282 (301)
320 2nxp_A Transcription initiatio 96.5 0.0033 1.1E-07 58.0 6.2 82 67-149 48-136 (156)
321 1zgk_A Kelch-like ECH-associat 96.5 0.31 1.1E-05 51.6 22.9 231 820-1078 23-292 (308)
322 4asc_A Kelch repeat and BTB do 96.4 0.61 2.1E-05 49.5 24.2 224 830-1079 12-283 (315)
323 2j4b_A TAF5, transcription ini 96.3 0.0021 7.3E-08 57.7 3.4 81 67-149 29-116 (138)
324 3das_A Putative oxidoreductase 96.3 1.5 5E-05 46.7 28.0 233 810-1058 31-325 (347)
325 1cru_A Protein (soluble quinop 96.3 0.99 3.4E-05 50.5 26.0 104 811-914 27-163 (454)
326 3pbp_A Nucleoporin NUP82; beta 96.2 0.056 1.9E-06 58.1 14.4 126 351-486 66-208 (452)
327 3ii7_A Kelch-like protein 7; p 96.2 0.35 1.2E-05 51.1 21.2 188 820-1022 54-276 (306)
328 2j49_A Transcription initiatio 96.2 0.0016 5.5E-08 59.0 2.0 82 66-149 30-118 (148)
329 2g8s_A Glucose/sorbosone dehyd 96.2 1.9 6.3E-05 46.5 26.8 113 350-477 17-148 (353)
330 1uuj_A Platelet-activating fac 96.1 0.0028 9.6E-08 50.2 2.6 56 5-60 10-67 (88)
331 2xn4_A Kelch-like protein 2; s 95.9 0.69 2.4E-05 48.7 21.8 187 821-1022 61-280 (302)
332 3sre_A PON1, serum paraoxonase 95.9 0.73 2.5E-05 49.2 21.5 186 414-629 51-285 (355)
333 1xi4_A Clathrin heavy chain; a 95.9 0.39 1.3E-05 59.8 20.9 236 814-1073 69-333 (1630)
334 2uvk_A YJHT; unknown function, 95.8 1.2 4E-05 48.2 23.3 198 821-1026 65-350 (357)
335 4asc_A Kelch repeat and BTB do 95.7 1.1 3.9E-05 47.3 22.3 193 817-1024 41-283 (315)
336 1xi4_A Clathrin heavy chain; a 95.7 0.32 1.1E-05 60.6 19.1 246 356-641 71-331 (1630)
337 2be1_A Serine/threonine-protei 95.6 0.097 3.3E-06 55.5 12.8 199 865-1076 11-236 (339)
338 2uvk_A YJHT; unknown function, 95.5 1.2 4.2E-05 48.1 22.3 91 821-915 19-128 (357)
339 2woz_A Kelch repeat and BTB do 95.5 2.4 8.3E-05 44.8 24.2 222 831-1078 24-292 (318)
340 1tl2_A L10, protein (tachylect 95.4 0.11 3.8E-06 50.3 11.2 148 812-968 42-204 (236)
341 3sbq_A Nitrous-oxide reductase 95.4 2.4 8.4E-05 47.1 23.0 195 820-1019 140-409 (638)
342 3s25_A Hypothetical 7-bladed b 95.3 2.9 0.0001 43.6 22.9 172 819-1020 22-218 (302)
343 1tl2_A L10, protein (tachylect 95.2 0.12 4.1E-06 50.0 10.8 147 853-1011 42-203 (236)
344 1zgk_A Kelch-like ECH-associat 95.0 1.4 4.8E-05 46.4 20.3 187 821-1022 70-291 (308)
345 3sbq_A Nitrous-oxide reductase 95.0 5.8 0.0002 44.2 29.6 100 811-913 323-453 (638)
346 2woz_A Kelch repeat and BTB do 94.7 1.9 6.5E-05 45.6 20.2 193 817-1024 52-293 (318)
347 3das_A Putative oxidoreductase 94.7 5.3 0.00018 42.3 29.5 114 349-478 30-158 (347)
348 2zwa_A Leucine carboxyl methyl 94.0 3.6 0.00012 49.0 22.4 198 820-1022 396-639 (695)
349 2be1_A Serine/threonine-protei 93.5 3.1 0.00011 43.9 18.1 115 425-544 11-140 (339)
350 1cru_A Protein (soluble quinop 93.4 6.9 0.00023 43.6 22.0 110 895-1007 27-163 (454)
351 3s25_A Hypothetical 7-bladed b 93.2 9.2 0.00031 39.8 25.5 175 816-1019 58-256 (302)
352 3sre_A PON1, serum paraoxonase 92.9 11 0.00039 40.0 30.2 167 350-535 49-253 (355)
353 3b7f_A Glycosyl hydrolase, BNR 92.8 13 0.00044 40.5 27.4 259 810-1078 54-377 (394)
354 3qhy_B Beta-lactamase inhibito 92.0 7.9 0.00027 39.8 18.8 222 812-1071 25-246 (282)
355 3qhy_B Beta-lactamase inhibito 90.4 17 0.00059 37.2 20.1 184 812-1019 64-247 (282)
356 2wg3_C Hedgehog-interacting pr 89.0 32 0.0011 38.2 25.4 115 351-479 14-158 (463)
357 2zwa_A Leucine carboxyl methyl 87.5 23 0.00077 42.0 20.2 198 863-1077 397-639 (695)
358 3q6k_A 43.2 kDa salivary prote 86.2 39 0.0013 36.1 21.0 156 831-1018 123-306 (381)
359 2wg3_C Hedgehog-interacting pr 83.2 17 0.00059 40.3 15.2 113 895-1008 14-159 (463)
360 3uc1_A DNA gyrase subunit A; D 81.4 55 0.0019 34.2 25.1 159 809-974 93-279 (327)
361 4gq2_M Nucleoporin NUP120; bet 81.1 6.6 0.00023 48.5 11.9 81 988-1073 236-319 (950)
362 3no0_A DNA gyrase subunit A; D 77.3 66 0.0022 32.6 21.0 114 809-926 66-197 (276)
363 4hvt_A Ritya.17583.B, post-pro 76.3 1.3E+02 0.0044 35.5 24.1 194 815-1020 133-383 (711)
364 3b7f_A Glycosyl hydrolase, BNR 72.8 1.1E+02 0.0037 33.0 23.1 205 864-1078 22-267 (394)
365 4gq2_M Nucleoporin NUP120; bet 71.6 90 0.0031 38.4 18.2 73 568-640 237-316 (950)
366 3no0_A DNA gyrase subunit A; D 67.0 1.1E+02 0.0038 30.9 20.4 196 812-1018 25-246 (276)
367 3f7f_A Nucleoporin NUP120; nuc 58.4 30 0.001 40.2 9.5 37 989-1027 223-259 (729)
368 4fhn_B Nucleoporin NUP120; pro 55.0 79 0.0027 39.9 13.7 40 568-607 239-278 (1139)
369 4gco_A Protein STI-1; structur 51.0 61 0.0021 27.9 8.6 99 14-119 22-125 (126)
370 4fhn_B Nucleoporin NUP120; pro 50.9 12 0.0004 47.5 5.2 43 988-1030 238-280 (1139)
371 2d68_A FOP, FGFR1OP; alpha hel 50.8 13 0.00043 29.3 3.3 29 7-35 20-48 (82)
372 4hvt_A Ritya.17583.B, post-pro 48.0 4E+02 0.014 31.3 27.8 180 831-1020 216-431 (711)
373 2lni_A Stress-induced-phosphop 45.2 1.2E+02 0.0042 25.4 9.9 90 7-102 18-112 (133)
374 3uc1_A DNA gyrase subunit A; D 44.4 2.9E+02 0.0099 28.6 26.5 202 811-1018 42-279 (327)
375 1suu_A DNA gyrase subunit A; t 43.5 2.9E+02 0.0099 28.4 28.6 191 820-1019 6-232 (312)
376 3mkr_A Coatomer subunit epsilo 43.4 85 0.0029 32.0 9.7 83 7-100 66-156 (291)
377 3zwu_A Alkaline phosphatase PH 42.9 54 0.0018 37.4 8.4 59 946-1005 477-548 (592)
378 1wp5_A Topoisomerase IV; broke 42.0 3.1E+02 0.011 28.3 27.2 238 820-1071 3-277 (323)
379 1zi0_A DNA gyrase subunit A; b 41.2 3.1E+02 0.011 28.1 27.2 236 821-1071 2-277 (307)
380 4a9v_A PHOX; hydrolase, beta-p 41.0 63 0.0022 36.4 8.3 60 946-1006 477-549 (592)
381 2wpv_A GET4, UPF0363 protein Y 38.6 1.3E+02 0.0043 31.1 9.6 108 38-176 17-125 (312)
382 1wp5_A Topoisomerase IV; broke 37.9 3.6E+02 0.012 27.9 26.1 150 753-925 3-174 (323)
383 3q6k_A 43.2 kDa salivary prote 37.7 4E+02 0.014 28.3 23.5 62 435-497 124-197 (381)
384 1elw_A TPR1-domain of HOP; HOP 36.3 1.7E+02 0.0058 23.6 10.3 102 8-116 7-113 (118)
385 3mkr_A Coatomer subunit epsilo 35.6 2E+02 0.0069 29.1 11.0 16 45-60 141-156 (291)
386 3kci_A Probable E3 ubiquitin-p 34.7 4.4E+02 0.015 27.9 28.5 287 705-1018 9-345 (389)
387 3zwu_A Alkaline phosphatase PH 34.5 66 0.0022 36.7 7.3 58 854-912 478-548 (592)
388 4ga2_A E3 SUMO-protein ligase 31.7 1.7E+02 0.0059 25.7 8.7 94 21-121 13-111 (150)
389 3f7f_A Nucleoporin NUP120; nuc 31.7 2.4E+02 0.0082 32.8 11.3 30 577-606 230-259 (729)
390 4a9v_A PHOX; hydrolase, beta-p 31.6 1.1E+02 0.0036 34.6 8.2 60 853-913 477-549 (592)
391 2vgx_A Chaperone SYCD; alterna 30.9 2.7E+02 0.0093 24.4 10.0 85 10-100 26-115 (148)
392 4g26_A Pentatricopeptide repea 30.4 2.7E+02 0.0094 31.0 11.7 79 16-99 116-200 (501)
393 3qou_A Protein YBBN; thioredox 30.0 1.7E+02 0.0057 29.6 9.3 104 11-121 123-231 (287)
394 1suu_A DNA gyrase subunit A; t 29.2 4.8E+02 0.016 26.7 29.7 198 753-974 6-231 (312)
395 3upv_A Heat shock protein STI1 29.1 1.9E+02 0.0066 24.1 8.3 87 9-101 8-99 (126)
396 3sz7_A HSC70 cochaperone (SGT) 29.1 1.7E+02 0.0058 26.1 8.3 87 9-101 15-106 (164)
397 3mez_A Mannose-specific lectin 29.0 2.5E+02 0.0087 23.4 8.5 79 898-1004 22-100 (111)
398 4gcn_A Protein STI-1; structur 28.9 1.7E+02 0.0059 24.8 7.9 101 15-117 18-124 (127)
399 1zbp_A Hypothetical protein VP 28.8 72 0.0025 31.8 5.6 67 12-85 4-75 (273)
400 2zux_A YESW protein; beta-prop 28.1 6.8E+02 0.023 28.1 19.8 181 349-542 177-408 (591)
401 4asv_A Small glutamine-rich te 27.7 19 0.00065 28.7 1.0 19 1-19 15-33 (92)
402 2zux_A YESW protein; beta-prop 27.7 6.9E+02 0.024 28.0 22.1 42 456-498 177-246 (591)
403 2xcb_A PCRH, regulatory protei 27.1 3E+02 0.01 23.6 9.8 84 11-100 24-112 (142)
404 1na0_A Designed protein CTPR3; 27.1 2.5E+02 0.0086 22.7 9.9 100 11-117 15-119 (125)
405 2dba_A Smooth muscle cell asso 26.4 3E+02 0.01 23.4 11.0 104 8-118 31-142 (148)
406 4gyw_A UDP-N-acetylglucosamine 26.4 6.2E+02 0.021 29.6 14.3 14 87-100 124-137 (723)
407 3kci_A Probable E3 ubiquitin-p 26.2 6E+02 0.021 26.8 24.4 199 424-640 62-292 (389)
408 2qfc_A PLCR protein; TPR, HTH, 26.1 2.8E+02 0.0097 27.8 10.3 96 7-102 77-183 (293)
409 1kdl_A YOPD protein; yersinia, 25.6 40 0.0014 19.3 1.7 14 5-18 4-17 (26)
410 3bu8_A Telomeric repeat-bindin 24.6 2E+02 0.007 27.3 7.3 100 69-180 109-209 (235)
411 3ma5_A Tetratricopeptide repea 23.3 1.2E+02 0.004 24.5 5.4 53 44-102 17-69 (100)
412 3q49_B STIP1 homology and U bo 21.9 3E+02 0.01 23.0 8.3 87 9-101 13-104 (137)
413 3hym_B Cell division cycle pro 21.8 5.3E+02 0.018 25.7 11.7 103 9-118 93-202 (330)
414 2kck_A TPR repeat; tetratricop 21.6 2.2E+02 0.0074 22.6 7.0 84 15-102 16-105 (112)
415 2xz2_A CSTF-50, isoform B; RNA 21.5 93 0.0032 23.0 3.5 31 5-35 16-46 (66)
416 1hxi_A PEX5, peroxisome target 21.5 1.8E+02 0.0061 24.5 6.4 52 10-61 22-78 (121)
417 1oyi_A Double-stranded RNA-bin 21.3 51 0.0017 26.0 2.3 30 6-37 16-45 (82)
418 3lpz_A GET4 (YOR164C homolog); 21.2 2.2E+02 0.0076 29.5 7.8 23 38-60 16-41 (336)
419 1elr_A TPR2A-domain of HOP; HO 20.9 3.4E+02 0.012 22.1 9.1 94 9-102 8-107 (131)
420 1sqj_A OXG-RCBH, oligoxylogluc 20.6 1.1E+03 0.037 27.9 23.3 165 851-1021 14-203 (789)
421 3u4t_A TPR repeat-containing p 20.3 5.4E+02 0.019 24.8 11.0 91 9-102 7-102 (272)
422 3urz_A Uncharacterized protein 20.2 3.8E+02 0.013 25.0 9.3 107 6-119 5-132 (208)
423 2yhc_A BAMD, UPF0169 lipoprote 20.0 2E+02 0.0069 27.5 7.3 97 7-104 6-126 (225)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=5.3e-67 Score=632.42 Aligned_cols=566 Identities=23% Similarity=0.361 Sum_probs=469.1
Q ss_pred eeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC
Q 001295 344 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 423 (1106)
Q Consensus 344 ~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd 423 (1106)
.++.+|++.|+|++|||||++ ||+|+.|++|+|||. +++.+. .+.+|.+.|++++||||
T Consensus 10 ~~L~GH~~~V~~~a~spdg~~-las~~~d~~v~iWd~-~~~~~~-------------------~l~gh~~~V~~l~fspd 68 (577)
T 2ymu_A 10 NRLEAHSSSVRGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQ-------------------TLTGHSSSVWGVAFSPD 68 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEECT-TSCEEE-------------------EEECCSSCEEEEEECTT
T ss_pred eEECCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEEC-CCCEEE-------------------EEeCCCCCEEEEEECCC
Confidence 345569999999999999995 999999999999995 566654 37899999999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCC
Q 001295 424 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 503 (1106)
Q Consensus 424 g~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 503 (1106)
|++||+++.|++|+|||+. ++.+. .+.+|...|.+++|+|+++ +|++++.|+.+++|+.. ........+|...
T Consensus 69 g~~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~~ 141 (577)
T 2ymu_A 69 GQTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHSSS 141 (577)
T ss_dssp SSEEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCSSC
T ss_pred CCEEEEEeCCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccc-cceeeeccCCCCc
Confidence 9999999999999999975 44443 6889999999999999999 89999999999999955 4556777889999
Q ss_pred eEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEE
Q 001295 504 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 583 (1106)
Q Consensus 504 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 583 (1106)
|.++.++++ +..+++++.++.+++|+... ........+...+..+.++|+ +.++++
T Consensus 142 v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~---------------------~~~l~~ 197 (577)
T 2ymu_A 142 VWGVAFSPD--GQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPD---------------------GQTIAS 197 (577)
T ss_dssp EEEEEECTT--SSCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEEEEECTT---------------------SSCEEE
T ss_pred eeeeeeecC--Cccceecccccceeccccce-eeeeeccCCCcceeeeeecCC---------------------CCEEEE
Confidence 999997654 46899999999999998653 333344445555555555554 457999
Q ss_pred EECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCC
Q 001295 584 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 663 (1106)
Q Consensus 584 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (1106)
++.|+.|++||. +++.+..+..+ ...|.+++|+|++++|++++.|+.|++||... +.+..+.+|...+.
T Consensus 198 ~~~d~~v~~w~~-~~~~~~~~~~~--~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~--~~~~~~~~~~~~v~------ 266 (577)
T 2ymu_A 198 ASDDKTVKLWNR-NGQLLQTLTGH--SSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVN------ 266 (577)
T ss_dssp EETTSEEEEECT-TSCEEEEEECC--SSCEEEEEECTTSSCEEEEETTSCEEEECTTS--CEEEEECCCSSCEE------
T ss_pred EcCCCEEEEEeC-CCcEEEEEecC--CCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC--CEEEEEecCCCCEE------
Confidence 999999999996 56777888766 44799999999999999999999999999643 34444555443322
Q ss_pred CCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccc
Q 001295 664 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA 743 (1106)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 743 (1106)
.+.+.+++..+++++.|+.+++|+... .....+ .+|.
T Consensus 267 -----------------------------------~v~~~~d~~~l~~~~~d~~i~~w~~~~----~~~~~~----~~h~ 303 (577)
T 2ymu_A 267 -----------------------------------GVAFRPDGQTIASASDDKTVKLWNRNG----QLLQTL----TGHS 303 (577)
T ss_dssp -----------------------------------EEEECTTSSEEEEEETTSCEEEEETTS----CEEEEE----CCCS
T ss_pred -----------------------------------EEEEcCCCCEEEEEeCCCEEEEEeCCC----cEEEEE----ecCC
Confidence 123456788999999999999999653 122222 3588
Q ss_pred cceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCC
Q 001295 744 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 823 (1106)
Q Consensus 744 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~ 823 (1106)
..|.+++|+|+++.+++++.|+.+++|++... .... +. .|...+.+++|+|+++
T Consensus 304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~----------------------~~~~--~~--~~~~~v~~~~~s~~g~ 357 (577)
T 2ymu_A 304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ----------------------HLQT--LT--GHSSSVWGVAFSPDGQ 357 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSC----------------------EEEE--EC--CCSSCEEEEEECTTSS
T ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC----------------------eeEE--Ee--CCCCCEEEEEECCCCC
Confidence 99999999999999999999999999986521 1111 22 2888999999999999
Q ss_pred EEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEE
Q 001295 824 YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF 902 (1106)
Q Consensus 824 ~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~ 902 (1106)
+|++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|
T Consensus 358 ~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~ 434 (577)
T 2ymu_A 358 TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAF 434 (577)
T ss_dssp EEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEE
T ss_pred EEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEE
Confidence 999998 899999995 5678888999999999999999 9999999999999999995 57888999999999999999
Q ss_pred ecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCceEeeec
Q 001295 903 SHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQW 981 (1106)
Q Consensus 903 s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~~~~~~ 981 (1106)
+||+++|++++.|++|++||... + .+....+|. ..|.+++|+||+++|++ +.|+.|++||. +++++..+
T Consensus 435 s~d~~~l~~~~~d~~v~~w~~~~-~-----~~~~~~~~~---~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~ 504 (577)
T 2ymu_A 435 SPDDQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL 504 (577)
T ss_dssp CTTSSEEEEEETTSEEEEEETTS-C-----EEEEEECCS---SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEE
T ss_pred CCCCCEEEEEcCCCEEEEEECCC-C-----EEEEEcCCC---CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEE
Confidence 99999999999999999999754 2 233344554 37899999999999999 58899999995 57777777
Q ss_pred ccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCC
Q 001295 982 VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD 1061 (1106)
Q Consensus 982 ~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~D 1061 (1106)
. +|...|++++|+|||++||+++.||+|+|||. +++.+..+. +|.. .|. .++|+| |+++|++++.|
T Consensus 505 ~--~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~-------~h~~-~v~--~~~fs~-dg~~l~s~~~D 570 (577)
T 2ymu_A 505 T--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-------GHSS-SVW--GVAFSP-DGQTIASASSD 570 (577)
T ss_dssp E--CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE-------CCSS-CEE--EEEECT-TSSCEEEEETT
T ss_pred e--CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc-------CCCC-CEE--EEEEcC-CCCEEEEEeCC
Confidence 6 89999999999999999999999999999996 677777665 4433 366 899999 78999999999
Q ss_pred CcEEEEe
Q 001295 1062 GGVHVFE 1068 (1106)
Q Consensus 1062 g~v~vW~ 1068 (1106)
|+|++||
T Consensus 571 ~~i~~Wd 577 (577)
T 2ymu_A 571 KTVKLWN 577 (577)
T ss_dssp SCEEEEC
T ss_pred CEEEEeC
Confidence 9999997
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=9e-66 Score=621.38 Aligned_cols=578 Identities=14% Similarity=0.135 Sum_probs=450.9
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 428 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 428 (1106)
+.+.+.+++|||||++ ||+++ +++|+|||+.+++... .+.+|...|++++|||||++||
T Consensus 17 ~~g~~~~~~~spdg~~-l~~~~-~~~v~l~~~~~~~~~~-------------------~~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred ccCceeEEeeCCCCCE-EEeCC-CCEEEEecCCCcccCe-------------------EecCCCCceEEEEECCCCcEEE
Confidence 5788999999999995 88877 5799999998877655 3789999999999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCC----CcEEEEeCCCCceeEEEeccCCCe
Q 001295 429 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD----KTIKVWDATNGAKQYIFEGHEAPV 504 (1106)
Q Consensus 429 s~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~h~~~v 504 (1106)
+|+.|++|+|||+.+++... ...+.+|.+.|.+++|+||++ .|++++.+ +.|++|| +++....+.+|...|
T Consensus 76 sg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v 150 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAM 150 (611)
T ss_dssp EEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCE
T ss_pred EEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCCc
Confidence 99999999999997655432 235788999999999999999 67777654 3677776 567778899999999
Q ss_pred EEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEE
Q 001295 505 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 584 (1106)
Q Consensus 505 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 584 (1106)
.+++|+++.. ..|++|+.|++|++||..+.+....+..|...|.+++|+|+++ +|+++
T Consensus 151 ~~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~---------------------~las~ 208 (611)
T 1nr0_A 151 NSVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS---------------------LFAST 208 (611)
T ss_dssp EEEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSS---------------------EEEEE
T ss_pred eEEEECCCCC-eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCC---------------------EEEEE
Confidence 9999977542 3699999999999999887766677777777777777777665 79999
Q ss_pred ECCCeEEEEECCCcceeEEEccC-----CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccC
Q 001295 585 GDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT 659 (1106)
Q Consensus 585 ~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 659 (1106)
+.|+.|++||+.+++.+..+... .|...|.+++|+|++++|++++.|++|++||+.++ +....+..+....
T Consensus 209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~-~~~~~~~~~~~~~--- 284 (611)
T 1nr0_A 209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL-KVEKTIPVGTRIE--- 284 (611)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSGG---
T ss_pred ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCC-ceeeeecCCCCcc---
Confidence 99999999999999988887421 34568999999999999999999999999999887 3333332211000
Q ss_pred CCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCc
Q 001295 660 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 739 (1106)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 739 (1106)
........++..+++++.|+.+++|+..... .... .
T Consensus 285 -------------------------------------~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~---~~~~----~ 320 (611)
T 1nr0_A 285 -------------------------------------DQQLGIIWTKQALVSISANGFINFVNPELGS---IDQV----R 320 (611)
T ss_dssp -------------------------------------GCEEEEEECSSCEEEEETTCCEEEEETTTTE---EEEE----E
T ss_pred -------------------------------------ceeEEEEEcCCEEEEEeCCCcEEEEeCCCCC---cceE----E
Confidence 0000011256789999999999999976532 1111 1
Q ss_pred cccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEe
Q 001295 740 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 819 (1106)
Q Consensus 740 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s 819 (1106)
.+|...|.+++|+|++++|++++.|+.|++||+.. +....... ..|...|.+++|+
T Consensus 321 ~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~----------------------~~~~~~~~--~~h~~~v~~~~~s 376 (611)
T 1nr0_A 321 YGHNKAITALSSSADGKTLFSADAEGHINSWDIST----------------------GISNRVFP--DVHATMITGIKTT 376 (611)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------CCEEECSS--CSCSSCEEEEEEC
T ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC----------------------Cceeeecc--cCCcceEEEEEEC
Confidence 35899999999999999999999999999998763 22222111 2388999999999
Q ss_pred cCCCEEEEEe-CCeEEEEEcCCCceeee---ecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCccc
Q 001295 820 KNDSYVMSAS-GGKISLFNMMTFKTMAT---FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 895 (1106)
Q Consensus 820 ~~~~~l~~~s-dg~i~vwd~~~~~~~~~---~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~ 895 (1106)
+++. +++++ |+++++|++.++..... .........+++|+| ++.+++++ .++.+++|+ .++ +..+. |..
T Consensus 377 ~~~~-l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~ 449 (611)
T 1nr0_A 377 SKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DGDIAVAA-CYKHIAIYS--HGK-LTEVP-ISY 449 (611)
T ss_dssp TTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-TSSCEEEE-ESSEEEEEE--TTE-EEEEE-CSS
T ss_pred CCCc-EEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-CCcEEEEE-eCceEEEEe--CCc-eeeee-cCC
Confidence 8775 55555 99999999887543321 011234568899999 78777776 467899998 444 55554 888
Q ss_pred CeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCC
Q 001295 896 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK 974 (1106)
Q Consensus 896 ~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~ 974 (1106)
.+.+++|+|||++||+|+.|++|++||+.++.... ... .+|. ..|.+++|+|||++|++ +.|+.|++||+.+
T Consensus 450 ~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~-~~h~---~~v~~v~fspdg~~las~s~d~~v~~w~~~~ 522 (611)
T 1nr0_A 450 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT-IVHP---AEITSVAFSNNGAFLVATDQSRKVIPYSVAN 522 (611)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-EECS---SCEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred CceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-cCCC---CceEEEEECCCCCEEEEEcCCCCEEEEEcCC
Confidence 89999999999999999999999999998753211 112 2333 47899999999999999 5899999999988
Q ss_pred -ceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEE-eeCCCcccCCCCCCCCccceEEEEeCCCC
Q 001295 975 -LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC-RINPSAYLPAGVSSSNVHPLVIAAHPQEP 1052 (1106)
Q Consensus 975 -~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~d~ 1052 (1106)
++++......+|...|++++|+|||++||+|+.|++|+|||+.++.... .. ..+|....|. +++|+| |+
T Consensus 523 ~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~------~~~h~~~~v~--~v~fs~-d~ 593 (611)
T 1nr0_A 523 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII------KGAHAMSSVN--SVIWLN-ET 593 (611)
T ss_dssp TTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEE------TTSSTTSCEE--EEEEEE-TT
T ss_pred CCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchh------hccCcccCee--EEEEcC-CC
Confidence 6665442233599999999999999999999999999999998875321 11 1244234466 899999 56
Q ss_pred CEEEEEeCCCcEEEEeec
Q 001295 1053 NEFALGLSDGGVHVFEPL 1070 (1106)
Q Consensus 1053 ~~l~t~~~Dg~v~vW~~~ 1070 (1106)
+ |++++.||+|++|++.
T Consensus 594 ~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 594 T-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp E-EEEEETTSCEEEEECC
T ss_pred E-EEEecCCCCEEEEecc
Confidence 6 9999999999999973
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.6e-61 Score=582.57 Aligned_cols=563 Identities=23% Similarity=0.355 Sum_probs=459.1
Q ss_pred ccccCCCCCCcccccccccCcccccCCCCCC-----CCCCCCCCCCCCCcceeeecc-CCCCcEEEEEecCCCeEEEEEe
Q 001295 297 SKRTRPIGISDEINLPVNVLPVSFTGHSHSH-----SHSQAFSTPEDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGT 370 (1106)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~llatg~ 370 (1106)
+++.++.||.+.| ..+.|++++... .....+|. ...+....+. |...|++++|||||++ ||+|+
T Consensus 7 ~e~~~L~GH~~~V------~~~a~spdg~~las~~~d~~v~iWd---~~~~~~~~l~gh~~~V~~l~fspdg~~-las~~ 76 (577)
T 2ymu_A 7 KERNRLEAHSSSV------RGVAFSPDGQTIASASDDKTVKLWN---RNGQLLQTLTGHSSSVWGVAFSPDGQT-IASAS 76 (577)
T ss_dssp CEEEEECCCSSCE------EEEEECTTSSCEEEEETTSEEEEEC---TTSCEEEEEECCSSCEEEEEECTTSSE-EEEEE
T ss_pred EEeeEECCCCCcE------EEEEECCCCCEEEEEeCCCEEEEEE---CCCCEEEEEeCCCCCEEEEEECCCCCE-EEEEe
Confidence 4566777887763 445555554421 11233444 2344555555 9999999999999995 99999
Q ss_pred ccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeee
Q 001295 371 NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH 450 (1106)
Q Consensus 371 ~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~ 450 (1106)
.|++|+|||.. ++.+. .+.+|...|.+++|+||+++|++++.|+.+++|+.......
T Consensus 77 ~d~~i~vWd~~-~~~~~-------------------~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~--- 133 (577)
T 2ymu_A 77 DDKTVKLWNRN-GQLLQ-------------------TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ--- 133 (577)
T ss_dssp TTSCEEEEETT-SCEEE-------------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEE---
T ss_pred CCCEEEEEECC-CCEEE-------------------EEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceee---
Confidence 99999999964 55554 36899999999999999999999999999999998764332
Q ss_pred eeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEE
Q 001295 451 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 530 (1106)
Q Consensus 451 ~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 530 (1106)
...+|...|.++.|+|++. .+++++.++.+++|+. ..........|...|.++.+++ ++.+|++++.|+.|++|
T Consensus 134 -~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~w 207 (577)
T 2ymu_A 134 -TLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP--DGQTIASASDDKTVKLW 207 (577)
T ss_dssp -EECCCSSCEEEEEECTTSS--CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECT--TSSCEEEEETTSEEEEE
T ss_pred -eccCCCCceeeeeeecCCc--cceecccccceecccc-ceeeeeeccCCCcceeeeeecC--CCCEEEEEcCCCEEEEE
Confidence 4678999999999999999 7899999999999994 5556777788999999999765 45789999999999999
Q ss_pred eCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCC
Q 001295 531 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL 610 (1106)
Q Consensus 531 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 610 (1106)
|.. .+....+..+...|.+++|+|+++ ++++++.|+.|++||. +++.+..+..+ .
T Consensus 208 ~~~-~~~~~~~~~~~~~v~~~~~s~dg~---------------------~l~~~~~d~~i~~w~~-~~~~~~~~~~~--~ 262 (577)
T 2ymu_A 208 NRN-GQLLQTLTGHSSSVRGVAFSPDGQ---------------------TIASASDDKTVKLWNR-NGQLLQTLTGH--S 262 (577)
T ss_dssp CTT-SCEEEEEECCSSCEEEEEECTTSS---------------------CEEEEETTSCEEEECT-TSCEEEEECCC--S
T ss_pred eCC-CcEEEEEecCCCCEEEEEECCCCC---------------------EEEEEeCCCEEEEEeC-CCCEEEEEecC--C
Confidence 964 455556666766676666666655 7999999999999996 56777777766 4
Q ss_pred CCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccc
Q 001295 611 PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM 690 (1106)
Q Consensus 611 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1106)
..|.+++|+|+++++++++.|+.|++|+... +....+.+|...+.
T Consensus 263 ~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~--~~~~~~~~h~~~v~--------------------------------- 307 (577)
T 2ymu_A 263 SSVNGVAFRPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVW--------------------------------- 307 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTS--CEEEEECCCSSCEE---------------------------------
T ss_pred CCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC--cEEEEEecCCCCeE---------------------------------
Confidence 5799999999999999999999999999643 34445555544322
Q ss_pred cccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEe
Q 001295 691 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW 770 (1106)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw 770 (1106)
...+.+++..+++++.|+.+++|+.... ....+ .+|...|.+++|+|+++.+++++.|+.+++|
T Consensus 308 --------~~~~~~~~~~l~t~~~d~~i~~w~~~~~----~~~~~----~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~ 371 (577)
T 2ymu_A 308 --------GVAFSPDGQTIASASDDKTVKLWNRNGQ----HLQTL----TGHSSSVWGVAFSPDGQTIASASDDKTVKLW 371 (577)
T ss_dssp --------EEEECTTSSEEEEEETTSCEEEEETTSC----EEEEE----CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred --------EEEECCCCCEEEEEeCCCeEEEEeCCCC----eeEEE----eCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 1234567889999999999999997642 22222 3478899999999999999999999999999
Q ss_pred eccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecC
Q 001295 771 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP 849 (1106)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~ 849 (1106)
+... ..+.. +. .|...|.+++|+|++++|++++ |+.|++||. +++.+..+.+
T Consensus 372 ~~~~-----------------------~~~~~-~~--~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~ 424 (577)
T 2ymu_A 372 NRNG-----------------------QLLQT-LT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG 424 (577)
T ss_dssp ETTC-----------------------CEEEE-EE--CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEEC
T ss_pred cCCC-----------------------CEEEE-ec--CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecC
Confidence 8531 11111 22 2888999999999999999998 899999995 5678888999
Q ss_pred CCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccc
Q 001295 850 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ 929 (1106)
Q Consensus 850 ~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~ 929 (1106)
|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|+||+++|++++.|++|++||... +
T Consensus 425 ~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~-- 499 (577)
T 2ymu_A 425 HSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q-- 499 (577)
T ss_dssp CSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS-C--
T ss_pred CCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-C--
Confidence 999999999999 8999999999999999996 5778889999999999999999999999999999999999643 2
Q ss_pred cceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC
Q 001295 930 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1008 (1106)
Q Consensus 930 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D 1008 (1106)
.+....+|. ..|.+++|+|||++|++ +.|+.|++||. +++++..+. +|...|++++|+|||++|++++.|
T Consensus 500 ---~~~~~~~h~---~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~--~h~~~v~~~~fs~dg~~l~s~~~D 570 (577)
T 2ymu_A 500 ---LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--GHSSSVWGVAFSPDGQTIASASSD 570 (577)
T ss_dssp ---EEEEEECCS---SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE--CCSSCEEEEEECTTSSCEEEEETT
T ss_pred ---EEEEEeCCC---CCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc--CCCCCEEEEEEcCCCCEEEEEeCC
Confidence 344455555 37999999999999999 58899999996 577777776 899999999999999999999999
Q ss_pred CeEEEEE
Q 001295 1009 ATVCVFS 1015 (1106)
Q Consensus 1009 g~i~vwd 1015 (1106)
++|++||
T Consensus 571 ~~i~~Wd 577 (577)
T 2ymu_A 571 KTVKLWN 577 (577)
T ss_dssp SCEEEEC
T ss_pred CEEEEeC
Confidence 9999997
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.5e-61 Score=581.30 Aligned_cols=537 Identities=15% Similarity=0.196 Sum_probs=426.0
Q ss_pred eccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCC
Q 001295 346 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 425 (1106)
Q Consensus 346 ~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 425 (1106)
..+|.+.|++++|||||++ ||+|+.||+|+|||+.+++..... .+.+|.+.|.+++|+|||+
T Consensus 55 ~~~h~~~v~~~~~spdg~~-lasg~~d~~v~lWd~~~~~~~~~~-----------------~~~~~~~~v~~v~fs~dg~ 116 (611)
T 1nr0_A 55 YTEHSHQTTVAKTSPSGYY-CASGDVHGNVRIWDTTQTTHILKT-----------------TIPVFSGPVKDISWDSESK 116 (611)
T ss_dssp ECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEESSSTTCCEEE-----------------EEECSSSCEEEEEECTTSC
T ss_pred ecCCCCceEEEEECCCCcE-EEEEeCCCCEEEeECCCCcceeeE-----------------eecccCCceEEEEECCCCC
Confidence 3469999999999999995 999999999999999766543211 2578999999999999999
Q ss_pred EEEEEeCC----CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccC
Q 001295 426 LFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 501 (1106)
Q Consensus 426 ~las~~~d----~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 501 (1106)
+||+++.+ +.|++|| +++... .+.+|...|.+++|+|++.. .|++|+.|++|++||..+++++..+.+|.
T Consensus 117 ~l~~~~~~~~~~~~v~~wd--~~~~~~---~l~gh~~~v~~v~f~p~~~~-~l~s~s~D~~v~lwd~~~~~~~~~l~~H~ 190 (611)
T 1nr0_A 117 RIAAVGEGRERFGHVFLFD--TGTSNG---NLTGQARAMNSVDFKPSRPF-RIISGSDDNTVAIFEGPPFKFKSTFGEHT 190 (611)
T ss_dssp EEEEEECCSSCSEEEEETT--TCCBCB---CCCCCSSCEEEEEECSSSSC-EEEEEETTSCEEEEETTTBEEEEEECCCS
T ss_pred EEEEEECCCCceeEEEEee--CCCCcc---eecCCCCCceEEEECCCCCe-EEEEEeCCCeEEEEECCCCeEeeeecccc
Confidence 99998865 4677777 444443 58899999999999999874 59999999999999999999999999999
Q ss_pred CCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEee-------CCCCeeEEEEEecCCCeEEEeeeccceeEEEE
Q 001295 502 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-------APGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 574 (1106)
Q Consensus 502 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~ 574 (1106)
..|.+++|++ ++.+|++++.|++|++||+.+++....+. .|...|.+++|+|++
T Consensus 191 ~~V~~v~fsp--dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg----------------- 251 (611)
T 1nr0_A 191 KFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG----------------- 251 (611)
T ss_dssp SCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS-----------------
T ss_pred CceEEEEECC--CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCC-----------------
Confidence 9999999876 45799999999999999998877665553 455555555555554
Q ss_pred cCCCCEEEEEECCCeEEEEECCCcceeEEEccCCC-CCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccc
Q 001295 575 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 653 (1106)
Q Consensus 575 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 653 (1106)
++|++++.|++|++||+.+++.+..+..+.. ...+..+.| ++..+++++.|+.+++|+..++ .....+.+|.
T Consensus 252 ----~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~-~~~~~~~gh~ 324 (611)
T 1nr0_A 252 ----TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELG-SIDQVRYGHN 324 (611)
T ss_dssp ----SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTT-EEEEEECCCS
T ss_pred ----CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCC-CcceEEcCCC
Confidence 5899999999999999999999888864321 112334555 7889999999999999998877 4555556665
Q ss_pred cccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccce
Q 001295 654 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR 733 (1106)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~ 733 (1106)
..+. ...+.+++..+++++.|++|++||+.......
T Consensus 325 ~~v~-----------------------------------------~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~--- 360 (611)
T 1nr0_A 325 KAIT-----------------------------------------ALSSSADGKTLFSADAEGHINSWDISTGISNR--- 360 (611)
T ss_dssp SCEE-----------------------------------------EEEECTTSSEEEEEETTSCEEEEETTTCCEEE---
T ss_pred CCEE-----------------------------------------EEEEeCCCCEEEEEeCCCcEEEEECCCCceee---
Confidence 5433 22345678999999999999999998643211
Q ss_pred ecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCe
Q 001295 734 SLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV 813 (1106)
Q Consensus 734 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v 813 (1106)
....+|...|.+++|++++ .+++++.|+.+++|+......... ..... ......
T Consensus 361 ---~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~-----------------~~~~~-----~~~~~~ 414 (611)
T 1nr0_A 361 ---VFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSS-----------------KAVAN-----KLSSQP 414 (611)
T ss_dssp ---CSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTT-----------------SCCEE-----ECSSCE
T ss_pred ---ecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCcccccc-----------------ceeee-----ecCCCC
Confidence 1113588899999999876 588999999999998764221100 00000 023456
Q ss_pred eEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceE--EEEec
Q 001295 814 PCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV--KSKLK 891 (1106)
Q Consensus 814 ~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~--~~~l~ 891 (1106)
.+++++|+++.++++.++.+++|+ .++ +..+. |...+.+++|+| |+++||+|+.|++|++||+.+++. +.. .
T Consensus 415 ~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~-~ 488 (611)
T 1nr0_A 415 LGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT-I 488 (611)
T ss_dssp EEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEE-E
T ss_pred cEEEEeCCCcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeec-c
Confidence 789999999999888899999998 333 45554 778899999999 999999999999999999988654 334 6
Q ss_pred CcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCC-cccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEE
Q 001295 892 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAI 969 (1106)
Q Consensus 892 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i 969 (1106)
+|...|++|+|+|||++|++++.|++|++|++.+ ++.... ....+|. ..|.+++|+|||++|++ +.|+.|++
T Consensus 489 ~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~---~~~~~H~---~~V~~v~fspdg~~lasgs~D~~v~l 562 (611)
T 1nr0_A 489 VHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT---NSWTFHT---AKVACVSWSPDNVRLATGSLDNSVIV 562 (611)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC---CCCCCCS---SCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeee---eeeeecc---cceeEEEECCCCCEEEEEECCCcEEE
Confidence 7999999999999999999999999999999987 332110 0122244 48999999999999999 58999999
Q ss_pred EecCCceE-e-eecccCCC-CCCeeEEEECCCCCEEEEEEcCCeEEEEEcC
Q 001295 970 FETTKLEC-V-KQWVPRES-SAPITHATFSCDSQLVYACFLDATVCVFSAA 1017 (1106)
Q Consensus 970 ~d~~~~~~-~-~~~~~~~h-~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~ 1017 (1106)
||+.++.. . ..+ .+| ...|++++|+||++ |++++.|++|++|++.
T Consensus 563 W~~~~~~~~~~~~~--~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 563 WNMNKPSDHPIIIK--GAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EETTCTTSCCEEET--TSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred EECCCcccccchhh--ccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 99988653 2 333 378 89999999999998 9999999999999973
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3e-61 Score=635.95 Aligned_cols=595 Identities=15% Similarity=0.167 Sum_probs=488.8
Q ss_pred eccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCC
Q 001295 346 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 425 (1106)
Q Consensus 346 ~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 425 (1106)
..+|.+.|++++|||+|++ +|+|+.||+|+|||+.+++.+.. +.+|.+.|.+++|+|||+
T Consensus 611 ~~~h~~~v~~~~~s~~~~~-l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~~ 670 (1249)
T 3sfz_A 611 VRPHTDAVYHACFSQDGQR-IASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFSSDDS 670 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTTSS
T ss_pred EecccccEEEEEECCCCCE-EEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEecCCC
Confidence 4459999999999999995 99999999999999999987763 689999999999999999
Q ss_pred EEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeE
Q 001295 426 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 505 (1106)
Q Consensus 426 ~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 505 (1106)
+||+++.|++|+|||+.+++.+. .+.+|...|.+++|+|++...++++|+.|+.|++||+.+++++..+.+|...|.
T Consensus 671 ~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~ 747 (1249)
T 3sfz_A 671 YIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVN 747 (1249)
T ss_dssp EEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEE
T ss_pred EEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEE
Confidence 99999999999999999988765 678999999999999975554899999999999999999999999999999999
Q ss_pred EEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCC-------------CCeeEEEEEecCCCeEEEe---------
Q 001295 506 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP-------------GRWCTTMAYSADGTRTYQG--------- 563 (1106)
Q Consensus 506 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~~~~~--------- 563 (1106)
+++|+++ +.++++++.||.|++||+.+......+... ...+.+++|+|+|+.++.+
T Consensus 748 ~~~~sp~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d 825 (1249)
T 3sfz_A 748 HCRFSPD--DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFD 825 (1249)
T ss_dssp EEEECSS--TTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEE
T ss_pred EEEEecC--CCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEE
Confidence 9998764 479999999999999999887665544321 2367788899998865543
Q ss_pred ------------eeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCC
Q 001295 564 ------------FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 631 (1106)
Q Consensus 564 ------------~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 631 (1106)
.+...+..++|+|++.++++++.|+.|++||+.++..+..+.+| ...|.+++|+|+++++++++.|
T Consensus 826 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h--~~~v~~v~~spdg~~l~s~s~d 903 (1249)
T 3sfz_A 826 IHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGH--LSWVHGVMFSPDGSSFLTASDD 903 (1249)
T ss_dssp TTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETT
T ss_pred ecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCC--ccceEEEEECCCCCEEEEEeCC
Confidence 23457888999999999999999999999999999999988866 4589999999999999999999
Q ss_pred CcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCcccc
Q 001295 632 NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT 711 (1106)
Q Consensus 632 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 711 (1106)
|.|++|++.+.... ........ ......+....++.
T Consensus 904 g~v~vw~~~~~~~~-~~~~~~~~-------------------------------------------~~~~~~~~~~~~~~ 939 (1249)
T 3sfz_A 904 QTIRVWETKKVCKN-SAIVLKQE-------------------------------------------IDVVFQENETMVLA 939 (1249)
T ss_dssp SCEEEEEHHHHHSC-CSSSEEEE-------------------------------------------EEEEEETTEEEEEE
T ss_pred CeEEEEEcccccee-eeecccce-------------------------------------------eeEEEcCCCcEEEE
Confidence 99999998643111 10000000 00011122333444
Q ss_pred ccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccc
Q 001295 712 EESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQL 791 (1106)
Q Consensus 712 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 791 (1106)
....+.+.+|...... .. ......+.+++|+|+++++++++.+|.+++|++..
T Consensus 940 ~~~~~~~~~~~~~~~~----~~------~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~----------------- 992 (1249)
T 3sfz_A 940 VDNIRGLQLIAGKTGQ----ID------YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN----------------- 992 (1249)
T ss_dssp EESSSSEEEEEESSCC----EE------EECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT-----------------
T ss_pred ecCCcceEEEecCcce----EE------EcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC-----------------
Confidence 5555566666554321 11 11456799999999999999999999999998763
Q ss_pred cCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEe
Q 001295 792 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG 870 (1106)
Q Consensus 792 w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g 870 (1106)
+..... +. +|...|++++|+|++++|++++ ||.|++||+.+++... +..|...|.+++|+| ++ .++++
T Consensus 993 -----~~~~~~-~~--~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~-~l~~~ 1061 (1249)
T 3sfz_A 993 -----NRVFSS-GV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS-RLLSW 1061 (1249)
T ss_dssp -----TSCEEE-CC--CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-EEEEE
T ss_pred -----Cceeee-cc--cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-CC-cEEEE
Confidence 222211 22 3889999999999999999998 8999999999987764 557899999999999 65 56788
Q ss_pred eCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceE
Q 001295 871 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV 950 (1106)
Q Consensus 871 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 950 (1106)
+.||.|++||+.+++.+..+.+|.+.|++++|+||+++|++++.|++|++||+.+++. +....+|. ..|.++
T Consensus 1062 ~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~-----~~~l~~h~---~~v~~~ 1133 (1249)
T 3sfz_A 1062 SFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP-----LHELKGHN---GCVRCS 1133 (1249)
T ss_dssp ESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC-----SBCCCCCS---SCEEEE
T ss_pred ECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce-----eeeeccCC---CcEEEE
Confidence 9999999999999999999999999999999999999999999999999999988653 34444554 478999
Q ss_pred EEcCCCcEEEE-EeCCeEEEEecCCceEeeecc-------cCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeE
Q 001295 951 QFHQDQIHFLV-VHETQLAIFETTKLECVKQWV-------PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1022 (1106)
Q Consensus 951 ~~s~dg~~l~~-~~d~~v~i~d~~~~~~~~~~~-------~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~ 1022 (1106)
+|+|||++|++ +.|+.|++||+.+++++..+. ..+|...|++++|+|||++|++++ |+|++||+.+++.+
T Consensus 1134 ~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~ 1211 (1249)
T 3sfz_A 1134 AFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSS 1211 (1249)
T ss_dssp EECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCC
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCcee
Confidence 99999999999 578999999999998877651 136889999999999999999885 99999999999887
Q ss_pred EeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeec
Q 001295 1023 CRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1070 (1106)
Q Consensus 1023 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~ 1070 (1106)
..+. +| ...+. .++|+| |+++|++++.||.|++|++.
T Consensus 1212 ~~~~-------~~-~~~i~--~~~~s~-dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1212 QTFY-------TN-GTNLK--KIHVSP-DFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp CCCC-------CS-SCCCC--CCEECS-SSCCEEEECTTCCEEEECCC
T ss_pred eeee-------cc-CCccc--EEEECC-CCCEEEEecCCcEEEEEeec
Confidence 6654 22 22255 789999 78999999999999999985
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.3e-58 Score=564.19 Aligned_cols=560 Identities=12% Similarity=0.151 Sum_probs=457.5
Q ss_pred cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCc----ceeEEeeeeeeccCcCCccccccccCCCCcC-eEEEEEcc
Q 001295 348 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR----ERLVLRNFKVWDLGACSMPLQAALVKDPGVS-VNRVIWSP 422 (1106)
Q Consensus 348 ~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~-V~~l~~sp 422 (1106)
.|...|++++|||+|++ ||+|+ ++.|+|||+.++ +... .+.+|... |.+++|+|
T Consensus 16 ~~~~~v~~~~~spdg~~-l~~~~-~~~v~v~~~~~~~~~~~~~~-------------------~~~~h~~~~v~~~~~sp 74 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNA-IAYPC-GKSAFVRCLDDGDSKVPPVV-------------------QFTGHGSSVVTTVKFSP 74 (615)
T ss_dssp CCTTCCCCCEEETTTTE-EEEEE-TTEEEEEECCSSCCSSCSEE-------------------EECTTTTSCEEEEEECS
T ss_pred CccCceeEEEECCCCCE-EEEec-CCeEEEEECCCCCCccccce-------------------EEecCCCceEEEEEECc
Confidence 48899999999999995 77777 789999999987 5554 37899999 99999999
Q ss_pred --CCCEEEEEeCCCeEEEEEccCCc-----eeeeeeeeccccCCeeEEEEcCCCCceEEEEecCC----CcEEEEeCCCC
Q 001295 423 --DGSLFGVAYSRHIVQIYSYHGGD-----EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD----KTIKVWDATNG 491 (1106)
Q Consensus 423 --dg~~las~~~d~~v~iwd~~~~~-----~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d----~~i~iwd~~~~ 491 (1106)
++++||+++.||.|+|||+.+++ .......+.+|...|.+++|+|+++ ++++++.+ +.|++|| ++
T Consensus 75 ~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~~ 150 (615)
T 1pgu_A 75 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--SG 150 (615)
T ss_dssp STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--TC
T ss_pred CCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--CC
Confidence 99999999999999999997651 1223346778999999999999999 78888877 6888887 67
Q ss_pred ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCC---eeEEEEEecC-CCeEEEeeecc
Q 001295 492 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR---WCTTMAYSAD-GTRTYQGFRKR 567 (1106)
Q Consensus 492 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~~~~~~~~~ 567 (1106)
+.+..+.+|...|.+++|+++.. .++++++.|+.|++||+.+.+....+..+.. .|.+++|+|+ +
T Consensus 151 ~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------- 219 (615)
T 1pgu_A 151 NSLGEVSGHSQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSG---------- 219 (615)
T ss_dssp CEEEECCSCSSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTC----------
T ss_pred CcceeeecCCccEEEEEECCCCC-cEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCC----------
Confidence 78899999999999999976542 3899999999999999988777777777766 6666666665 5
Q ss_pred ceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEE-c---cCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCc
Q 001295 568 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI-D---ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 643 (1106)
Q Consensus 568 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~---~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 643 (1106)
+++++++.|+.|++||+.+++.+..+ . .+ ...|.+++|+ ++++|++++.||.|++||+.++
T Consensus 220 -----------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~- 284 (615)
T 1pgu_A 220 -----------EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV--QGGIFALSWL-DSQKFATVGADATIRVWDVTTS- 284 (615)
T ss_dssp -----------CEEEEEETTCCEEEEETTTCCEEEECCBTTBCC--CSCEEEEEES-SSSEEEEEETTSEEEEEETTTT-
T ss_pred -----------CEEEEEeCCCeEEEEECCCCCEeEEeccccccc--CCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC-
Confidence 47999999999999999999999888 3 44 4579999999 9999999999999999999887
Q ss_pred hhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEec
Q 001295 644 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 723 (1106)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~ 723 (1106)
+....+..+...... .......+++..+++++.++.+++|++
T Consensus 285 ~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~l~~~~~~g~i~~~d~ 326 (615)
T 1pgu_A 285 KCVQKWTLDKQQLGN--------------------------------------QQVGVVATGNGRIISLSLDGTLNFYEL 326 (615)
T ss_dssp EEEEEEECCTTCGGG--------------------------------------CEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred cEEEEEcCCCCcccC--------------------------------------ceeEEEeCCCCeEEEEECCCCEEEEEC
Confidence 444444333110000 000011126788999999999999998
Q ss_pred CCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccc
Q 001295 724 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 803 (1106)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 803 (1106)
..... ...+ .+|...|.+++| |+ +++++.||.|++|++. .
T Consensus 327 ~~~~~---~~~~----~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~-------------------------~---- 366 (615)
T 1pgu_A 327 GHDEV---LKTI----SGHNKGITALTV-NP---LISGSYDGRIMEWSSS-------------------------S---- 366 (615)
T ss_dssp TEEEE---EEEE----CCCSSCEEEEET-TT---TEEEETTSCEEETTTT-------------------------E----
T ss_pred CCCcE---EEEE----eCCCCCEEEEEe-cC---cEEECCCCeEEEEEch-------------------------h----
Confidence 75221 1111 348899999999 88 9999999999999764 0
Q ss_pred cCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEee
Q 001295 804 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 882 (1106)
Q Consensus 804 ~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~ 882 (1106)
+. ..|...|.+++| +++..+++++ |+.|++||+.+++... .+.+++|+| ++.+++++ .++.+++|++.
T Consensus 367 ~~-~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~-------~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~ 435 (615)
T 1pgu_A 367 MH-QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS-------QPKVASANN-DGFTAVLT-NDDDLLILQSF 435 (615)
T ss_dssp EE-CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS-------CEEEEEECS-SSEEEEEE-TTSEEEEEETT
T ss_pred hc-CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC-------CceEEEEcC-CCCEEEEe-CCCceEEEecc
Confidence 01 238899999999 6677778777 9999999988765433 688999999 88888877 78999999999
Q ss_pred cceEEEEecCcccCeeEEEEecCCCEEEEEcC-CCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE
Q 001295 883 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 961 (1106)
Q Consensus 883 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 961 (1106)
+++.+..+. |...+++++|+ +++|++++. |+.|++||+.+++... ....+|. ..|.+++|+|+|++|++
T Consensus 436 ~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~----~~~~~~~---~~v~~~~~s~~g~~l~~ 505 (615)
T 1pgu_A 436 TGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF----DLKTPLR---AKPSYISISPSETYIAA 505 (615)
T ss_dssp TCCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEE----ECSSCCS---SCEEEEEECTTSSEEEE
T ss_pred CCceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccc----cccCCcc---CceEEEEECCCCCEEEE
Confidence 999888887 88999999999 889999999 9999999998854311 3333443 48899999999999999
Q ss_pred -EeCCeEEEEecCCceEeeecccCC-CCCCeeEEEECC----------CCCEEEEEEcCCeEEEEEcCCc-eeEEeeCCC
Q 001295 962 -VHETQLAIFETTKLECVKQWVPRE-SSAPITHATFSC----------DSQLVYACFLDATVCVFSAANL-KLRCRINPS 1028 (1106)
Q Consensus 962 -~~d~~v~i~d~~~~~~~~~~~~~~-h~~~v~~l~~s~----------d~~~l~t~s~Dg~i~vwd~~~~-~~~~~~~~~ 1028 (1106)
+.|+.|++||+.+++.+..+. + |...|++++|+| ++++|++++.||+|++||+.++ +.+..+.
T Consensus 506 ~~~dg~i~iw~~~~~~~~~~~~--~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-- 581 (615)
T 1pgu_A 506 GDVMGKILLYDLQSREVKTSRW--AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN-- 581 (615)
T ss_dssp EETTSCEEEEETTTTEEEECCS--CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT--
T ss_pred cCCCCeEEEeeCCCCcceeEee--cCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh--
Confidence 488999999999999988765 5 899999999999 9999999999999999999998 6666654
Q ss_pred cccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecC
Q 001295 1029 AYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus 1029 ~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
+| ...|. .++|+| |++ |++++.||.|++|++++
T Consensus 582 -----~h-~~~v~--~l~~s~-~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 582 -----AH-KDGVN--NLLWET-PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp -----SS-TTCEE--EEEEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred -----cC-ccceE--EEEEcC-CCC-eEEecCCceEEEEeeec
Confidence 33 33366 899999 677 99999999999999976
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.8e-57 Score=595.85 Aligned_cols=568 Identities=17% Similarity=0.217 Sum_probs=465.4
Q ss_pred ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295 407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 486 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 486 (1106)
.+.+|.+.|++++|||||++||+|+.||+|+|||+.+++.+. .+.+|.+.|.+++|+|+++ ++++|+.|++|+||
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIW 684 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEE
Confidence 478999999999999999999999999999999999988665 6789999999999999999 89999999999999
Q ss_pred eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeec
Q 001295 487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 566 (1106)
Q Consensus 487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 566 (1106)
|+.+++.+..+.+|...|.+++|++..++.++++|+.||.|++||++++.....+..|...|.+++|+|+++
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~-------- 756 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE-------- 756 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTT--------
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCC--------
Confidence 999999999999999999999998877778999999999999999999888888888877777777776665
Q ss_pred cceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCC-----------CCCCcCeEEEccCCCEEEEEeCCCcEE
Q 001295 567 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG-----------GLPASPRIRFNKDGCLLAVSTNDNGIK 635 (1106)
Q Consensus 567 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~v~~s~~~~~l~~~~~dg~i~ 635 (1106)
++++++.||.|++||+.+++....+.... ....+.+++|+|+|+++++++ ++.+.
T Consensus 757 -------------~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~ 822 (1249)
T 3sfz_A 757 -------------LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVL 822 (1249)
T ss_dssp -------------EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEE
T ss_pred -------------EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEE
Confidence 79999999999999999988777664321 123688999999999999988 58999
Q ss_pred EEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCC
Q 001295 636 ILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN 715 (1106)
Q Consensus 636 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 715 (1106)
+||..++........+|...+ ....+.+++..+++++.+
T Consensus 823 ~~d~~~~~~~~~~~~~~~~~v-----------------------------------------~~~~~sp~~~~l~~~~~d 861 (1249)
T 3sfz_A 823 LFDIHTSGLLAEIHTGHHSTI-----------------------------------------QYCDFSPYDHLAVIALSQ 861 (1249)
T ss_dssp EEETTTCCEEEEEECSSSSCC-----------------------------------------CEEEECSSTTEEEEECSS
T ss_pred EEEecCCCceeEEcCCCCCce-----------------------------------------EEEEEcCCCCEEEEEeCC
Confidence 999988733222222332221 123345678899999999
Q ss_pred CceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCcc------------
Q 001295 716 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKA------------ 783 (1106)
Q Consensus 716 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~------------ 783 (1106)
+.+++|++........ + .+|...|.+++|+|+++.+++++.||.+++|++...........
T Consensus 862 g~v~vwd~~~~~~~~~-----~--~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1249)
T 3sfz_A 862 YCVELWNIDSRLKVAD-----C--RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENE 934 (1249)
T ss_dssp SCEEEEETTTTEEEEE-----E--CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTE
T ss_pred CeEEEEEcCCCceeee-----c--CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCC
Confidence 9999999986322111 1 35889999999999999999999999999999865321110000
Q ss_pred --c----cccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeE
Q 001295 784 --T----ASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATF 856 (1106)
Q Consensus 784 --~----~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~ 856 (1106)
. ....+.++...++..... +...+.+++++|+++++++|+ +|.|++||+.+++....+.+|...|++
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~ 1008 (1249)
T 3sfz_A 935 TMVLAVDNIRGLQLIAGKTGQIDYL------PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRH 1008 (1249)
T ss_dssp EEEEEEESSSSEEEEEESSCCEEEE------CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCC
T ss_pred cEEEEecCCcceEEEecCcceEEEc------ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEE
Confidence 0 001122333333333221 466799999999999999999 899999999999999999999999999
Q ss_pred EEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecc
Q 001295 857 LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQI 936 (1106)
Q Consensus 857 l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~ 936 (1106)
++|+| ++++|++++.||.|++||+.+++.. .+.+|...|.+++|++++ .+++++.|++|++||+.+++.. ..
T Consensus 1009 l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~-----~~ 1080 (1249)
T 3sfz_A 1009 IQFTA-DGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIE-----RD 1080 (1249)
T ss_dssp EEECS-SSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCC-----EE
T ss_pred EEECC-CCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCcee-----EE
Confidence 99999 8999999999999999999998876 456899999999999975 6788999999999999987642 23
Q ss_pred cCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEE
Q 001295 937 PTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1015 (1106)
Q Consensus 937 ~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd 1015 (1106)
..+|. ..|.+++|+||++++++ +.|+.|++||+.+++++..+. +|...|++++|+|||++|++|+.||+|++||
T Consensus 1081 ~~~~~---~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~--~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A 1081 FTCHQ---GTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK--GHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp EECCS---SCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCC--CCSSCEEEEEECSSSSEEEEEETTSCCCEEE
T ss_pred EcccC---CcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeec--cCCCcEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 33444 37899999999999999 588999999999999888776 8899999999999999999999999999999
Q ss_pred cCCceeEEeeCCCccc--CCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCCC
Q 001295 1016 AANLKLRCRINPSAYL--PAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1074 (1106)
Q Consensus 1016 ~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~~ 1074 (1106)
+.+++.+..+...... ..+| ...+. .++|+| |+.+|++++ |.|++||+.+++.
T Consensus 1156 ~~~~~~~~~~~~~~~~~~~~~~-~~~v~--~l~fs~-dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1156 VSDGQLLHSCAPISVEEGTATH-GGWVT--DVCFSP-DSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp SSSSCCCCCCCCCC-------C-CSCCC--EEEECT-TSSCEEEES--SSEEEBCSSSCBC
T ss_pred CCCCceEEEecccccccccccc-CceEE--EEEECC-CCCEEEECC--CeEEEEECCCCce
Confidence 9999887765321111 1122 33366 899999 789999885 9999999999883
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-56 Score=555.52 Aligned_cols=628 Identities=10% Similarity=0.083 Sum_probs=434.5
Q ss_pred eeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc
Q 001295 343 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 422 (1106)
Q Consensus 343 ~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 422 (1106)
.....+|.+.|++++|+|+|+ +||+|+.||+|+|||..+.+.... ..|...|.+++|+|
T Consensus 10 ~~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~~--------------------~~~~~~V~~l~fsp 68 (902)
T 2oaj_A 10 ETNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVIK--------------------LEDRSAIKEMRFVK 68 (902)
T ss_dssp EEEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEEE--------------------CSSCCCEEEEEEET
T ss_pred cccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEEE--------------------cCCCCCEEEEEEcC
Confidence 344567999999999999999 599999999999999987665432 35788999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCcee--------
Q 001295 423 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-------- 494 (1106)
Q Consensus 423 dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-------- 494 (1106)
|++|++++.|++|+|||+.+++.+. .+. |.+.|++++|+|+++ ++++|+.||+|++||+.++++.
T Consensus 69 -g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~ 141 (902)
T 2oaj_A 69 -GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQ 141 (902)
T ss_dssp -TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHH
T ss_pred -CCEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceecccc
Confidence 8899999999999999999988765 343 678999999999999 8999999999999999988764
Q ss_pred ---EEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCC--eEEEeeeccce
Q 001295 495 ---YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT--RTYQGFRKRSL 569 (1106)
Q Consensus 495 ---~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~~~~~~~~~~i 569 (1106)
..+.+|.+.|.+++|++.. +..+++|+.||.| +||+++......+..+...- .+.+. .....++...+
T Consensus 142 ~~~~~~~~h~~~V~sl~~sp~~-~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~h~~~V 214 (902)
T 2oaj_A 142 KSSFFPAARLSPIVSIQWNPRD-IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPF-----APGGDFSEKTNEKRTPKV 214 (902)
T ss_dssp HHHTCSSSCCCCCCEEEEETTE-EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTT-----CCCSTTCCCTTSCBCCCE
T ss_pred ccccccccCCCCeEEEEEccCC-CCEEEEEeCCCcE-EEECCCCceEEEEecccCCc-----CCCcccccccccccCCCe
Confidence 2346799999999998742 3689999999999 99999877666555431000 00000 00001122357
Q ss_pred eEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEc-----cCC-----------CCCCcCeEEEc----cCC-CEEEEE
Q 001295 570 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-----ADG-----------GLPASPRIRFN----KDG-CLLAVS 628 (1106)
Q Consensus 570 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~-----------~~~~v~~v~~s----~~~-~~l~~~ 628 (1106)
.+++|+|++.+|++++.|+.|++||+.+++++.... .+. +...|.+++|+ |++ .++++|
T Consensus 215 ~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg 294 (902)
T 2oaj_A 215 IQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISH 294 (902)
T ss_dssp EEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeC
Confidence 777788888899999999999999999998876421 121 23368899995 443 567788
Q ss_pred eCC-----CcEEEEEccC-Cc------hhh-hhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCC
Q 001295 629 TND-----NGIKILATSD-GI------RLL-RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPG 695 (1106)
Q Consensus 629 ~~d-----g~i~iwd~~~-~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1106)
+.+ +.+.+|++.. +. ..+ ..+......... .+. ....+.....
T Consensus 295 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-------~~~-----------------~~~~v~~~~~ 350 (902)
T 2oaj_A 295 KSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIF-------PLP-----------------TNVPIVNILP 350 (902)
T ss_dssp ECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEE-------CCS-----------------SSSCEEEEEE
T ss_pred CCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEE-------ecC-----------------CCCceEEEEE
Confidence 665 3788998531 10 000 000000000000 000 0000000000
Q ss_pred ---CCCCccccCCCCccccccCCCceeeEecCCCCCCccc--------------e--------------------ecccC
Q 001295 696 ---MNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC--------------R--------------------SLRLP 738 (1106)
Q Consensus 696 ---~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~--------------~--------------------~~~~~ 738 (1106)
.........+...+++++.|+.+++|++......... . ....+
T Consensus 351 ~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~ 430 (902)
T 2oaj_A 351 IPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYL 430 (902)
T ss_dssp CCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCS
T ss_pred CCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCc
Confidence 0000001123446788888999999998543211000 0 00001
Q ss_pred ccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEE
Q 001295 739 ENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL 818 (1106)
Q Consensus 739 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~ 818 (1106)
-.+|...+..++|+|+++.+++++.|++|++||+..+..... .++... +.. ..+.+|...|.+++|
T Consensus 431 l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~---------~~~~~~----l~~-~~~~~h~~~V~svaf 496 (902)
T 2oaj_A 431 LKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN---------ASFEVN----LSR-TLNKAKELAVDKISF 496 (902)
T ss_dssp CCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT---------BCEEEE----HHH-HTTCSSSCCEEEEEE
T ss_pred ccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCC---------ceEEee----chh-hcCCCCCCceeEEEe
Confidence 134555666677889999999999999999999875421100 000000 000 001138899999999
Q ss_pred ecCCCEEEEEe-CCeEEEEEcCCCc---------------------------------------------eeeeecCCCC
Q 001295 819 SKNDSYVMSAS-GGKISLFNMMTFK---------------------------------------------TMATFMPPPP 852 (1106)
Q Consensus 819 s~~~~~l~~~s-dg~i~vwd~~~~~---------------------------------------------~~~~~~~~~~ 852 (1106)
+||+++||+|+ ||+|+|||+.+++ ++..+.+|.+
T Consensus 497 spdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~ 576 (902)
T 2oaj_A 497 AAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKG 576 (902)
T ss_dssp ETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSC
T ss_pred cCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCC
Confidence 99999999999 9999999998652 3567888999
Q ss_pred CeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEE-----Eec-CcccCeeEEEEe-----cCC---CEEEEEcCCCcE
Q 001295 853 AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-----KLK-GHSKRITGLAFS-----HAL---NVLVSSGADSQL 918 (1106)
Q Consensus 853 ~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~-----~l~-~h~~~V~~l~~s-----~d~---~~l~s~s~Dg~i 918 (1106)
.|++++||| || +||+|+.|++|+|||+.++..+. .+. +|.+.|++|+|+ ||| ++|++|+.|++|
T Consensus 577 ~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv 654 (902)
T 2oaj_A 577 KTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEV 654 (902)
T ss_dssp SEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEE
T ss_pred cEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcE
Confidence 999999999 88 99999999999999998877653 343 899999999999 886 899999999999
Q ss_pred EEEeC---CCcccccceeecccCCCCC--CCCCCceEE-Ec----------------------CCCcEEEEEeCCeEEEE
Q 001295 919 CVWSS---DGWEKQKNRFLQIPTGRTP--TAQSDTRVQ-FH----------------------QDQIHFLVVHETQLAIF 970 (1106)
Q Consensus 919 ~vwd~---~~~~~~~~~~~~~~~~~~~--~~~~i~~~~-~s----------------------~dg~~l~~~~d~~v~i~ 970 (1106)
++||+ .+++. ...+.+|.. ....|..++ |+ +++..|+++ +..|++|
T Consensus 655 ~~wd~~p~~~g~~-----~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~-~~~ir~~ 728 (902)
T 2oaj_A 655 ITYKILPASGGKF-----DVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG-FDDIRLI 728 (902)
T ss_dssp EEEEEEECGGGCE-----EEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC-SSEEEEE
T ss_pred EEEEEecCCCCcE-----EEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe-ccceEEE
Confidence 99999 55543 222222210 013555565 55 556555544 8899999
Q ss_pred ecCCceEeeecccCCCCCCeeEE---E------ECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCcc
Q 001295 971 ETTKLECVKQWVPRESSAPITHA---T------FSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1041 (1106)
Q Consensus 971 d~~~~~~~~~~~~~~h~~~v~~l---~------~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1041 (1106)
++.++++.+... .|.-.+.++ . |++++..|++++.||+|++|++.+++++..+......-. ..+.
T Consensus 729 ~~~~~k~~~k~~--~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~~~~----~~~~ 802 (902)
T 2oaj_A 729 TLGKSKSTHKGF--KYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPFPIAA----KYIT 802 (902)
T ss_dssp CTTCCCEEEEEC--SSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSSCCCH----HHHT
T ss_pred eCccccceeeEc--ccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccCCccccc----cccc
Confidence 999999987764 455566665 5 788999999999999999999999999988773221110 0011
Q ss_pred ceEEEEeCCCCCEEEEEeC
Q 001295 1042 PLVIAAHPQEPNEFALGLS 1060 (1106)
Q Consensus 1042 ~~~~~~~~~d~~~l~t~~~ 1060 (1106)
...|.+ +|+.++-.+.
T Consensus 803 --~~~~~~-~G~~~~~~~~ 818 (902)
T 2oaj_A 803 --ESSVLR-NGDIAIRVSE 818 (902)
T ss_dssp --TCEECT-TSCEEEECSS
T ss_pred --ceEEcC-CCCEEEEeCh
Confidence 356666 5777665543
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6.7e-55 Score=531.45 Aligned_cols=523 Identities=13% Similarity=0.159 Sum_probs=437.6
Q ss_pred ceeeeccCCCC-cEEEEEec--CCCeEEEEEeccCcEEEEecCCc------ceeEEeeeeeeccCcCCccccccccCCCC
Q 001295 342 TVTRTLNQGSS-PMSMDFHP--VQQTLLLVGTNVGDIGLWEVGSR------ERLVLRNFKVWDLGACSMPLQAALVKDPG 412 (1106)
Q Consensus 342 ~~~~~~~h~~~-v~~~~~sp--~g~~llatg~~dg~i~iwd~~~~------~~~~~~~~~~~d~~~~~~~~~~~~~~~h~ 412 (1106)
......+|.+. |++++|+| +|++ ||+|+.||.|+|||+.++ +.... ..+.+|.
T Consensus 55 ~~~~~~~h~~~~v~~~~~sp~~~~~~-l~s~~~dg~v~vw~~~~~~~~~~~~~~~~-----------------~~~~~~~ 116 (615)
T 1pgu_A 55 PVVQFTGHGSSVVTTVKFSPIKGSQY-LCSGDESGKVIVWGWTFDKESNSVEVNVK-----------------SEFQVLA 116 (615)
T ss_dssp SEEEECTTTTSCEEEEEECSSTTCCE-EEEEETTSEEEEEEEEEEGGGTEEEEEEE-----------------EEEECCS
T ss_pred cceEEecCCCceEEEEEECcCCCCCE-EEEecCCCEEEEEeCCCCccccccccccc-----------------chhhccc
Confidence 34444559999 99999999 9995 999999999999999765 11111 1357899
Q ss_pred cCeEEEEEccCCCEEEEEeCC----CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeC
Q 001295 413 VSVNRVIWSPDGSLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA 488 (1106)
Q Consensus 413 ~~V~~l~~spdg~~las~~~d----~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 488 (1106)
..|.+++|+|++++|++++.+ +.|.+|| +++.+. .+.+|...|.+++|+|+++. ++++++.|+.|++||+
T Consensus 117 ~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~---~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~v~vwd~ 190 (615)
T 1pgu_A 117 GPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLG---EVSGHSQRINACHLKQSRPM-RSMTVGDDGSVVFYQG 190 (615)
T ss_dssp SCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEE---ECCSCSSCEEEEEECSSSSC-EEEEEETTTEEEEEET
T ss_pred ccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcce---eeecCCccEEEEEECCCCCc-EEEEEeCCCcEEEEeC
Confidence 999999999999999999987 6888888 444443 67899999999999999975 6999999999999999
Q ss_pred CCCceeEEEeccCC---CeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEe-e---CCCCeeEEEEEecCCCeEE
Q 001295 489 TNGAKQYIFEGHEA---PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-E---APGRWCTTMAYSADGTRTY 561 (1106)
Q Consensus 489 ~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~---~~~~~v~~~~~s~~~~~~~ 561 (1106)
.+++.+..+.+|.. .|.+++|+++ ++.+|++++.||.|++||+.+.+....+ . .+...|.+++|+ ++.
T Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~--- 265 (615)
T 1pgu_A 191 PPFKFSASDRTHHKQGSFVRDVEFSPD-SGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQ--- 265 (615)
T ss_dssp TTBEEEEEECSSSCTTCCEEEEEECST-TCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSS---
T ss_pred CCcceeeeecccCCCCceEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCC---
Confidence 99999999999999 9999998764 1479999999999999999988877776 4 666667777666 554
Q ss_pred EeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCC--CCCcCeEEEccCCCEEEEEeCCCcEEEEEc
Q 001295 562 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG--LPASPRIRFNKDGCLLAVSTNDNGIKILAT 639 (1106)
Q Consensus 562 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 639 (1106)
++++++.|+.|++||+.+++.+..+..+.. ...+.++.|. ++.++++++.||.|++||+
T Consensus 266 ------------------~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~ 326 (615)
T 1pgu_A 266 ------------------KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYEL 326 (615)
T ss_dssp ------------------EEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEET
T ss_pred ------------------EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEEC
Confidence 799999999999999999999988876521 1346677775 8999999999999999999
Q ss_pred cCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCcee
Q 001295 640 SDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSK 719 (1106)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 719 (1106)
.++ +.+..+.+|...+.. ..+ ++ +++++.|+.++
T Consensus 327 ~~~-~~~~~~~~~~~~v~~-----------------------------------------~~~-~~---l~~~~~dg~i~ 360 (615)
T 1pgu_A 327 GHD-EVLKTISGHNKGITA-----------------------------------------LTV-NP---LISGSYDGRIM 360 (615)
T ss_dssp TEE-EEEEEECCCSSCEEE-----------------------------------------EET-TT---TEEEETTSCEE
T ss_pred CCC-cEEEEEeCCCCCEEE-----------------------------------------EEe-cC---cEEECCCCeEE
Confidence 876 555666665543321 112 22 89999999999
Q ss_pred eEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCc
Q 001295 720 VWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIM 799 (1106)
Q Consensus 720 vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 799 (1106)
+|++. .+. ..|...|.+++| +++..+++++.|+.+++|++.....
T Consensus 361 ~w~~~---------~~~---~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~---------------------- 405 (615)
T 1pgu_A 361 EWSSS---------SMH---QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEF---------------------- 405 (615)
T ss_dssp ETTTT---------EEE---CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEEC----------------------
T ss_pred EEEch---------hhc---CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcc----------------------
Confidence 99987 111 348899999999 6678899999999999998763211
Q ss_pred cccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeC-CCcEEE
Q 001295 800 MTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DSSIQI 878 (1106)
Q Consensus 800 ~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~-dg~v~i 878 (1106)
...+.+++++|++.+++++.++.+.+|++.+++.+..+. +...+++++|+ +++|++++. ||.|++
T Consensus 406 ----------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~l~~~~~~d~~i~~ 471 (615)
T 1pgu_A 406 ----------GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS---QNYVAVGLEEGNTIQV 471 (615)
T ss_dssp ----------SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSEEEEEETTTSCEEE
T ss_pred ----------cCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc---CCEEEEeecCCCeEEE
Confidence 125788999999999999888999999999999888887 78899999998 679999999 999999
Q ss_pred EEeecceEE-EEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCC-CCCCCCCCceEEEcC--
Q 001295 879 YNVRVDEVK-SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG-RTPTAQSDTRVQFHQ-- 954 (1106)
Q Consensus 879 wd~~~~~~~-~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~s~-- 954 (1106)
||+.+++.. ..+.+|...|++++|+|++++|++++.||.|++||+.+++. +....+ |. ..|.+++|+|
T Consensus 472 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~h~---~~v~~~~~sp~~ 543 (615)
T 1pgu_A 472 FKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV-----KTSRWAFRT---SKINAISWKPAE 543 (615)
T ss_dssp EETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----EECCSCCCS---SCEEEEEECCCC
T ss_pred EECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcc-----eeEeecCCC---CceeEEEEcCcc
Confidence 999988766 77889999999999999999999999999999999998654 333333 43 4899999999
Q ss_pred --------CCcEEEE-EeCCeEEEEecCCc-eEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001295 955 --------DQIHFLV-VHETQLAIFETTKL-ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus 955 --------dg~~l~~-~~d~~v~i~d~~~~-~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
++++|++ +.|+.|++||+.++ +++..+. +|...|++++|+||++ |++++.||+|++|++++
T Consensus 544 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 544 KGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--AHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp ------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT--SSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred ccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh--cCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 9999999 57899999999998 6777765 8999999999999999 99999999999999875
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-54 Score=539.18 Aligned_cols=593 Identities=11% Similarity=0.074 Sum_probs=417.6
Q ss_pred cCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEe
Q 001295 408 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 487 (1106)
Q Consensus 408 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd 487 (1106)
..+|.+.|++++|+|++++||+|+.||+|+||+..+.+... ...|...|.+++|+| |+ +|++++.|++|+|||
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~----~~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI----KLEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS 85 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE----ECSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE----EcCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence 45899999999999999999999999999999998766443 235788999999999 77 899999999999999
Q ss_pred CCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCce-----------eEeeCCCCeeEEEEEecC
Q 001295 488 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-----------VDYEAPGRWCTTMAYSAD 556 (1106)
Q Consensus 488 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~v~~~~~s~~ 556 (1106)
+.+++++..+. |...|++++|++ ++++|++|+.||.|++||+++.... ..+..|...|.+++|+|+
T Consensus 86 ~~~~~~~~~~~-~~~~V~~v~~sp--~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 86 LYSQKVLTTVF-VPGKITSIDTDA--SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp TTTCSEEEEEE-CSSCEEEEECCT--TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred CCCCcEEEEEc-CCCCEEEEEECC--CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 99999999887 778999999865 4579999999999999999875432 111234444555555443
Q ss_pred CCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccC----------------CCCCCcCeEEEcc
Q 001295 557 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD----------------GGLPASPRIRFNK 620 (1106)
Q Consensus 557 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----------------~~~~~v~~v~~s~ 620 (1106)
+ +..+++++.|+.| +||+.+++.+..+..+ .+...|.+++|+|
T Consensus 163 ~--------------------~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp 221 (902)
T 2oaj_A 163 D--------------------IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP 221 (902)
T ss_dssp E--------------------EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT
T ss_pred C--------------------CCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC
Confidence 2 2468899999999 9999999998888754 1235699999999
Q ss_pred CCCEEEEEeCCCcEEEEEccCCchhhh--hh---cccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCC
Q 001295 621 DGCLLAVSTNDNGIKILATSDGIRLLR--TF---ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPG 695 (1106)
Q Consensus 621 ~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1106)
+|++|++++.||.|++||+.++ +.+. .+ ..|... ...+.. .+.. ..++. ...
T Consensus 222 dg~~lasgs~Dg~i~lWd~~~g-~~~~~r~l~~~~~~~~~-~~~~~~---~~~~-----------------~~~V~-~v~ 278 (902)
T 2oaj_A 222 NSLHIITIHEDNSLVFWDANSG-HMIMARTVFETEINVPQ-PDYIRD---SSTN-----------------AAKIS-KVY 278 (902)
T ss_dssp TSSEEEEEETTCCEEEEETTTC-CEEEEECSSCSCTTSCC-TTCCCC---CSSC-----------------CCEEE-EEE
T ss_pred CCCEEEEEECCCeEEEEECCCC-cEEEEEeecccccCCCC-CcCCCC---Cccc-----------------cCCee-EEE
Confidence 9999999999999999999887 3322 11 111100 000000 0000 00000 000
Q ss_pred CCCCccccCCC-CccccccCC-----CceeeEecCCCCC---------------CccceecccCccccccceEEEEEcC-
Q 001295 696 MNGDVRSLADV-KPRITEESN-----DKSKVWKLTELSE---------------PNQCRSLRLPENLRATKISRLIFTN- 753 (1106)
Q Consensus 696 ~~~~~~~~~~~-~~l~~~~~d-----~~i~vw~~~~~~~---------------~~~~~~~~~~~~~~~~~i~~~~~s~- 753 (1106)
| .....+++ ..+++++.+ ..+.+|++..... ....+.+.+ .+...|.++.+.+
T Consensus 279 w--~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~ 353 (902)
T 2oaj_A 279 W--MCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPL---PTNVPIVNILPIPR 353 (902)
T ss_dssp E--EECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECC---SSSSCEEEEEECCS
T ss_pred E--EecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEec---CCCCceEEEEECCC
Confidence 0 00012332 445666554 3788888532100 000111111 2456788888765
Q ss_pred ---------CCceEEEeecCceEEEeeccccccCCC---------Cc--c-----ccccCccccCCCC---CCccccccC
Q 001295 754 ---------SGNAILALASNAIHLLWKWQRTERNSS---------GK--A-----TASVAPQLWQPPS---GIMMTNDVT 805 (1106)
Q Consensus 754 ---------~~~~l~~~~~dg~i~iw~~~~~~~~~~---------~~--~-----~~~~~~~~w~~~~---~~~~~~~~~ 805 (1106)
+...+++++.|+.+++|++..+..... +. . ......++|+... +.. ...+.
T Consensus 354 ~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~-~~~l~ 432 (902)
T 2oaj_A 354 QSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNK-DYLLK 432 (902)
T ss_dssp SCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCC-CCSCC
T ss_pred CCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCC-CCccc
Confidence 334688888999999999854321100 00 0 0001122343210 111 11233
Q ss_pred CCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceee--ee---------cCCCCCeeEEEEecCCCceEEEeeCC
Q 001295 806 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMA--TF---------MPPPPAATFLAFHPQDNNIIAIGMDD 873 (1106)
Q Consensus 806 ~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~--~~---------~~~~~~v~~l~~s~~d~~~la~g~~d 873 (1106)
+ |...+.+++|+|++++|++|+ |++|++||+.++.... .+ .+|...|++++|+| |+++||+|+.|
T Consensus 433 G--~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~D 509 (902)
T 2oaj_A 433 G--GVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIET 509 (902)
T ss_dssp C--SBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETT
T ss_pred C--CcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecC
Confidence 3 777888899999999999999 9999999998874321 11 17888999999999 99999999999
Q ss_pred CcEEEEEeecc---------------------------------------------eEEEEecCcccCeeEEEEecCCCE
Q 001295 874 SSIQIYNVRVD---------------------------------------------EVKSKLKGHSKRITGLAFSHALNV 908 (1106)
Q Consensus 874 g~v~iwd~~~~---------------------------------------------~~~~~l~~h~~~V~~l~~s~d~~~ 908 (1106)
|+|+|||+.++ +++..+.+|.+.|++|+||||| +
T Consensus 510 gtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~ 588 (902)
T 2oaj_A 510 GDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-F 588 (902)
T ss_dssp SCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-E
T ss_pred cEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-E
Confidence 99999999876 3477889999999999999999 9
Q ss_pred EEEEcCCCcEEEEeCCCcccccceeecccC-CCCCCCCCCceEEEc-----CCC---cEEEE-EeCCeEEEEec---CCc
Q 001295 909 LVSSGADSQLCVWSSDGWEKQKNRFLQIPT-GRTPTAQSDTRVQFH-----QDQ---IHFLV-VHETQLAIFET---TKL 975 (1106)
Q Consensus 909 l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~s-----~dg---~~l~~-~~d~~v~i~d~---~~~ 975 (1106)
||+|+.|++|+|||+++........+.... +|. ..|.+++|+ ||| ++|++ +.|++|++||+ .+|
T Consensus 589 lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~---~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g 665 (902)
T 2oaj_A 589 VGIAYAAGSLMLIDRRGPAIIYMENIREISGAQS---ACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGG 665 (902)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCC---CCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGG
T ss_pred EEEEeCCCcEEEEECCCCeEEEEeehhHhccccc---cceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCC
Confidence 999999999999999875432211122332 555 489999999 885 88888 58999999999 788
Q ss_pred eEeeecccC---CCCCCeeEEE-EC----------------------CCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCc
Q 001295 976 ECVKQWVPR---ESSAPITHAT-FS----------------------CDSQLVYACFLDATVCVFSAANLKLRCRINPSA 1029 (1106)
Q Consensus 976 ~~~~~~~~~---~h~~~v~~l~-~s----------------------~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~ 1029 (1106)
++...+... .|.++|.+++ |+ +++.+|+++ +..|+||++.+++..++..
T Consensus 666 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~--- 740 (902)
T 2oaj_A 666 KFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGF--- 740 (902)
T ss_dssp CEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEEC---
T ss_pred cEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeEc---
Confidence 887766521 1357888887 65 455555544 8899999999998887653
Q ss_pred ccCCCCCCCCccceEE---E------EeCCCCCEEEEEeCCCcEEEEeecCCC--CccCCCC
Q 001295 1030 YLPAGVSSSNVHPLVI---A------AHPQEPNEFALGLSDGGVHVFEPLESE--GKWGVPP 1080 (1106)
Q Consensus 1030 ~~~~~~~~~~v~~~~~---~------~~~~d~~~l~t~~~Dg~v~vW~~~~~~--~~~~~~~ 1080 (1106)
+|. ..+. ++ . |++ ++..|++++.||+|++|++.+.+ ..+.+++
T Consensus 741 ----~~~-~~~~--~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~ 794 (902)
T 2oaj_A 741 ----KYP-LAAT--GLSYISTVEKNNDRK-NLTVIITLEINGHLRVFTIPDFKEQMSEHIPF 794 (902)
T ss_dssp ----SSC-EEEE--EEEEEEEECSSSCEE-EEEEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred ----ccc-eeee--EEEEEEecccccccc-CceEEEEEeCCCcEEEEECcchHHHhhccCCc
Confidence 111 1133 33 4 666 68899999999999999999999 4444433
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.3e-46 Score=470.46 Aligned_cols=465 Identities=17% Similarity=0.223 Sum_probs=372.8
Q ss_pred ccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCE
Q 001295 347 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 426 (1106)
Q Consensus 347 ~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 426 (1106)
.+|.+.|++++|||+|++ ||+|+.||.|+|||+.+++.+.. +.+|.+.|.+++|+|++++
T Consensus 10 ~~h~~~v~~i~~sp~~~~-la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~s~~~~~ 69 (814)
T 3mkq_A 10 SNRSDRVKGIDFHPTEPW-VLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKFIARKNW 69 (814)
T ss_dssp EEECSCEEEEEECSSSSE-EEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEEGGGTE
T ss_pred ecCCCceEEEEECCCCCE-EEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEEeCCCCE
Confidence 349999999999999995 99999999999999999887663 6789999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC-ceeEEEeccCCCeE
Q 001295 427 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVY 505 (1106)
Q Consensus 427 las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~ 505 (1106)
|++++.||.|+|||+.+++.+. .+.+|.+.|.+++|+|+++ +|++++.|++|++||+.++ .....+.+|...|.
T Consensus 70 l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~ 144 (814)
T 3mkq_A 70 IIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVM 144 (814)
T ss_dssp EEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEE
T ss_pred EEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEE
Confidence 9999999999999999988665 5788999999999999999 7999999999999999987 77788999999999
Q ss_pred EEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCC-CeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEE
Q 001295 506 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG-RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 584 (1106)
Q Consensus 506 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 584 (1106)
+++|++. ++..|++++.||.|++||+........+..+. ..+..++|+|. +++.+++++
T Consensus 145 ~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-------------------~~~~~l~~~ 204 (814)
T 3mkq_A 145 CVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL-------------------PDKPYMITA 204 (814)
T ss_dssp EEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCS-------------------TTCCEEEEE
T ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEEC-------------------CCCCEEEEE
Confidence 9999762 44799999999999999998776655554433 44444444441 056689999
Q ss_pred ECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCC
Q 001295 585 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 664 (1106)
Q Consensus 585 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1106)
+.||.|++||+.+++.+..+..+ ...|.+++|+|+++++++++.||.|++||..++ +....+
T Consensus 205 ~~dg~i~~~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~--------------- 266 (814)
T 3mkq_A 205 SDDLTIKIWDYQTKSCVATLEGH--MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTL--------------- 266 (814)
T ss_dssp CTTSEEEEEETTTTEEEEEEECC--SSCEEEEEECSSSSEEEEEETTSCEEEEETTTC-SEEEEE---------------
T ss_pred eCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEe---------------
Confidence 99999999999999999988866 447999999999999999999999999998765 221111
Q ss_pred CCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCcccccc
Q 001295 665 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 744 (1106)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 744 (1106)
..+..
T Consensus 267 ---------------------------------------------------------------------------~~~~~ 271 (814)
T 3mkq_A 267 ---------------------------------------------------------------------------NVGLE 271 (814)
T ss_dssp ---------------------------------------------------------------------------CCSSS
T ss_pred ---------------------------------------------------------------------------ecCCC
Confidence 11556
Q ss_pred ceEEEEEcCCCceE-EEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCC
Q 001295 745 KISRLIFTNSGNAI-LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 823 (1106)
Q Consensus 745 ~i~~~~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~ 823 (1106)
.+.+++|+|++..+ ++++.++.+.+|++.. ....+.++|+++
T Consensus 272 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~g~ 314 (814)
T 3mkq_A 272 RSWCIATHPTGRKNYIASGFDNGFTVLSLGN-------------------------------------DEPTLSLDPVGK 314 (814)
T ss_dssp SEEEEEECTTCGGGEEEEEETTEEEEEECSC-------------------------------------CSCCEEECSSSE
T ss_pred cEEEEEEccCCCceEEEEEeCCCEEEEEcCC-------------------------------------CCceeEECCCCC
Confidence 88999999998753 6666677788887431 123577889999
Q ss_pred EEEEEe-CC---eEE------EEEcCCCcee----eeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEE
Q 001295 824 YVMSAS-GG---KIS------LFNMMTFKTM----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 889 (1106)
Q Consensus 824 ~l~~~s-dg---~i~------vwd~~~~~~~----~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~ 889 (1106)
.+++++ +. .+. .|++..+... ..+..+...+.+++|+| ++++|++++ ||.+.+|++......
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~~~~~~~~-- 390 (814)
T 3mkq_A 315 LVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYTALAWRNK-- 390 (814)
T ss_dssp EEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEETTTTEEE--
T ss_pred EEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEECcccccc--
Confidence 988876 32 122 2333333322 33455667899999999 999999998 899999998654432
Q ss_pred ecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCC---cEEEE-EeCC
Q 001295 890 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ---IHFLV-VHET 965 (1106)
Q Consensus 890 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg---~~l~~-~~d~ 965 (1106)
+.+.|.+++|+||+++|++++.||+|++|+.-. ++. ..+..++|+|+| .+|++ +.++
T Consensus 391 ---~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~-------------~~~---~~v~~~~~s~dg~~~~~l~~~~~d~ 451 (814)
T 3mkq_A 391 ---AFGKCQDFVWGPDSNSYALIDETGQIKYYKNFK-------------EVT---SWSVPMHSAIDRLFSGALLGVKSDG 451 (814)
T ss_dssp ---EEEECSEEEECTTSSCEEEECTTCCEEEEETTE-------------ECT---TCCCCCSSCCCEEECSSSEEEEETT
T ss_pred ---CCCceEEEEEeCCCCeEEEEeCCCcEEEEECCC-------------Ccc---ceEEcCCcCccceecceEEEEecCC
Confidence 356789999999999999999999999996432 121 256888999998 45555 7999
Q ss_pred eEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEE------EcCCeEEEE
Q 001295 966 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC------FLDATVCVF 1014 (1106)
Q Consensus 966 ~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~------s~Dg~i~vw 1014 (1106)
.|++||+.+++.+..+. .|.. .++|+|||++|+++ +.++.+.+|
T Consensus 452 ~v~~~d~~~~~~~~~~~--~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~ 501 (814)
T 3mkq_A 452 FVYFFDWDNGTLVRRID--VNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLL 501 (814)
T ss_dssp EEEEECTTTCCEEEEES--SCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEE
T ss_pred EEEEEECCcCcEEEEEe--cCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEE
Confidence 99999999999988875 3333 99999999999999 555555554
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3e-44 Score=452.64 Aligned_cols=466 Identities=16% Similarity=0.211 Sum_probs=375.8
Q ss_pred ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295 407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 486 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 486 (1106)
.+.+|.+.|.+++|||+|++||+++.||.|+|||+.+++.+. .+.+|.+.|.+++|+|+++ +|++|+.||.|++|
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVF 82 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEE
T ss_pred eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEE
Confidence 478999999999999999999999999999999999987665 5778999999999999999 89999999999999
Q ss_pred eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCC-CceeEeeCCCCeeEEEEEec-CCCeEEEee
Q 001295 487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSA-DGTRTYQGF 564 (1106)
Q Consensus 487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~~~~~~ 564 (1106)
|+.+++.+..+.+|...|.+++|+++ +.+|++++.||.|++||+++. .....+..+...+.+++|+| ++
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~------- 153 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPT--KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP------- 153 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSS--SSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEE-------
T ss_pred ECCCCcEEEEEecCCCCEEEEEEeCC--CCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCC-------
Confidence 99999999999999999999998764 478999999999999999876 34445666667677777666 44
Q ss_pred eccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEcc--CCCEEEEEeCCCcEEEEEccCC
Q 001295 565 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--DGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 565 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~--~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
+.+++++.||.|++||+.+++....+..+. ...+.+++|+| ++.++++++.||.|++||..++
T Consensus 154 --------------~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 218 (814)
T 3mkq_A 154 --------------STFASGCLDRTVKVWSLGQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218 (814)
T ss_dssp --------------EEEEEEETTSEEEEEETTCSSCSEEEECCC-TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT
T ss_pred --------------CEEEEEeCCCeEEEEECCCCcceeEEecCC-CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 379999999999999999888887776543 24789999999 9999999999999999998766
Q ss_pred chhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEe
Q 001295 643 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 722 (1106)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~ 722 (1106)
.....+
T Consensus 219 -~~~~~~------------------------------------------------------------------------- 224 (814)
T 3mkq_A 219 -SCVATL------------------------------------------------------------------------- 224 (814)
T ss_dssp -EEEEEE-------------------------------------------------------------------------
T ss_pred -cEEEEE-------------------------------------------------------------------------
Confidence 221111
Q ss_pred cCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccc
Q 001295 723 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 802 (1106)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 802 (1106)
.+|...|.+++|+|+++.+++++.||.|++|++.. +.....
T Consensus 225 -----------------~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~----------------------~~~~~~ 265 (814)
T 3mkq_A 225 -----------------EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST----------------------YKVEKT 265 (814)
T ss_dssp -----------------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT----------------------CSEEEE
T ss_pred -----------------cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC----------------------CcEEEE
Confidence 12667899999999999999999999999998763 222211
Q ss_pred ccCCCCCCCCeeEEEEecCCC--EEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCc---EE
Q 001295 803 DVTDSNPEEAVPCFALSKNDS--YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS---IQ 877 (1106)
Q Consensus 803 ~~~~~~~~~~v~~l~~s~~~~--~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~---v~ 877 (1106)
+. .+...+.+++|+|+++ +++++.++.+.+|++.... ..+.++| +++++++++.+.. +.
T Consensus 266 -~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~-~g~~~~~~~~~~~~~~~~ 329 (814)
T 3mkq_A 266 -LN--VGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE------------PTLSLDP-VGKLVWSGGKNAAASDIF 329 (814)
T ss_dssp -EC--CSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS------------CCEEECS-SSEEEEECCTTSCTTCEE
T ss_pred -ee--cCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC------------ceeEECC-CCCEEEECcccccceeee
Confidence 12 2678899999999997 5777779999999876532 3467788 8888888876653 11
Q ss_pred E------EEeecceE----EEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCC
Q 001295 878 I------YNVRVDEV----KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD 947 (1106)
Q Consensus 878 i------wd~~~~~~----~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i 947 (1106)
. |++..+.. ...+..|...+.+++|+|+|++|++++ |+.+.+|++....... ...+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~-------------~~~i 395 (814)
T 3mkq_A 330 TAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKA-------------FGKC 395 (814)
T ss_dssp EEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE-------------EEEC
T ss_pred eeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccccC-------------CCce
Confidence 1 22233322 244566778899999999999999998 8999999986532211 1357
Q ss_pred ceEEEcCCCcEEEEE-eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCC---CEEEEEEcCCeEEEEEcCCceeEE
Q 001295 948 TRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS---QLVYACFLDATVCVFSAANLKLRC 1023 (1106)
Q Consensus 948 ~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~---~~l~t~s~Dg~i~vwd~~~~~~~~ 1023 (1106)
.+++|+|||++++++ .++.|++|+.- .+|...+.+++|+||+ ++|++++.|++|++||+.+++.+.
T Consensus 396 ~~~~~spdg~~la~~~~~g~v~l~~~~----------~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~ 465 (814)
T 3mkq_A 396 QDFVWGPDSNSYALIDETGQIKYYKNF----------KEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVR 465 (814)
T ss_dssp SEEEECTTSSCEEEECTTCCEEEEETT----------EECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEE
T ss_pred EEEEEeCCCCeEEEEeCCCcEEEEECC----------CCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEE
Confidence 899999999999995 78999999632 2567889999999999 688999999999999999999998
Q ss_pred eeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEE------eCCCcEEEEe
Q 001295 1024 RINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG------LSDGGVHVFE 1068 (1106)
Q Consensus 1024 ~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~------~~Dg~v~vW~ 1068 (1106)
.+. +| .. .+.|+| ||++|+++ +.++.+.+|.
T Consensus 466 ~~~-------~~----~~--~v~~s~-dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 466 RID-------VN----AK--DVIWSD-NGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp EES-------SC----EE--EEEECT-TSSEEEEEECCCSSCSCSEEEEEE
T ss_pred EEe-------cC----CC--EEEEcC-CCCEEEEEEcCcccCCceEEEEEe
Confidence 877 21 11 689999 79999999 6555555554
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.7e-44 Score=409.83 Aligned_cols=305 Identities=16% Similarity=0.316 Sum_probs=260.9
Q ss_pred ccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCE
Q 001295 347 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 426 (1106)
Q Consensus 347 ~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 426 (1106)
.+|.+.|++++|+|+++ ++++|+.||+|+|||+.+++... .+.+|.+.|.+++|+|+|++
T Consensus 105 ~gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~-------------------~l~~h~~~V~~v~~~~~~~~ 164 (410)
T 1vyh_C 105 SGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFER-------------------TLKGHTDSVQDISFDHSGKL 164 (410)
T ss_dssp ECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCE-------------------EECCCSSCEEEEEECTTSSE
T ss_pred cccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEE-------------------EEeccCCcEEEEEEcCCCCE
Confidence 46999999999999999 59999999999999999988765 37899999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEE
Q 001295 427 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 506 (1106)
Q Consensus 427 las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 506 (1106)
|++|+.|++|+|||+.+++.+. .+.+|...|.+++|+|++. +|++|+.|++|++||+.++.++.++.+|...|.+
T Consensus 165 l~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~ 239 (410)
T 1vyh_C 165 LASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRM 239 (410)
T ss_dssp EEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred EEEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEE
Confidence 9999999999999999887665 6889999999999999999 8999999999999999999999999999999999
Q ss_pred EeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEEC
Q 001295 507 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 586 (1106)
Q Consensus 507 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 586 (1106)
+.+++ ++.+|++|+.|+.|++||+.+......+..|...|.+++|+|++......... ..........+.++++|+.
T Consensus 240 ~~~~~--~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~sgs~ 316 (410)
T 1vyh_C 240 VRPNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT-GSETKKSGKPGPFLLSGSR 316 (410)
T ss_dssp EEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC-SCC-------CCEEEEEET
T ss_pred EEECC--CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhc-cccccccCCCCCEEEEEeC
Confidence 99754 55899999999999999999998888899999999999999986421110000 0111223345778999999
Q ss_pred CCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCC
Q 001295 587 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 666 (1106)
Q Consensus 587 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (1106)
|+.|++||+.+++++..+.+|. ..|.+++|+|++++|++|+.||.|++||+.++ +.+..+
T Consensus 317 D~~i~iwd~~~~~~~~~~~~h~--~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~-~~~~~~----------------- 376 (410)
T 1vyh_C 317 DKTIKMWDVSTGMCLMTLVGHD--NWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTL----------------- 376 (410)
T ss_dssp TSEEEEEETTTTEEEEEEECCS--SCEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEE-----------------
T ss_pred CCeEEEEECCCCceEEEEECCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEE-----------------
Confidence 9999999999999999998764 47999999999999999999999999998765 222211
Q ss_pred cCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccce
Q 001295 667 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 746 (1106)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i 746 (1106)
.+|...|
T Consensus 377 -------------------------------------------------------------------------~~h~~~v 383 (410)
T 1vyh_C 377 -------------------------------------------------------------------------NAHEHFV 383 (410)
T ss_dssp -------------------------------------------------------------------------ECCSSCE
T ss_pred -------------------------------------------------------------------------cCCCCcE
Confidence 1277889
Q ss_pred EEEEEcCCCceEEEeecCceEEEeec
Q 001295 747 SRLIFTNSGNAILALASNAIHLLWKW 772 (1106)
Q Consensus 747 ~~~~~s~~~~~l~~~~~dg~i~iw~~ 772 (1106)
.+++|+|++.+|++++.|+.|++|++
T Consensus 384 ~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 384 TSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 99999999999999999999999975
No 14
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=6.1e-40 Score=374.90 Aligned_cols=306 Identities=21% Similarity=0.348 Sum_probs=262.3
Q ss_pred cCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEe
Q 001295 408 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 487 (1106)
Q Consensus 408 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd 487 (1106)
+.+|.++|++++|+|++++|++|+.||+|+|||+.+++... .+.+|.+.|.+++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 57899999999999999999999999999999999987665 6889999999999999999 899999999999999
Q ss_pred CCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeecc
Q 001295 488 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 567 (1106)
Q Consensus 488 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~ 567 (1106)
+.+++++..+.+|...|.+++|+++ +.+|++|+.|++|++||++++.....+..|...+.++.+++++.
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p~--~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~--------- 247 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMPN--GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT--------- 247 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSS--SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS---------
T ss_pred CCCCceeEEEcCCCCCEEEEEEeCC--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCC---------
Confidence 9999999999999999999998764 47999999999999999999888888887777777766666655
Q ss_pred ceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhh
Q 001295 568 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 647 (1106)
Q Consensus 568 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 647 (1106)
++++++.|+.|++||+.+++....+..|. ..|.+++|+|++.+. ...
T Consensus 248 ------------~l~s~s~D~~v~vwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~-------------------~~~ 294 (410)
T 1vyh_C 248 ------------LIASCSNDQTVRVWVVATKECKAELREHR--HVVECISWAPESSYS-------------------SIS 294 (410)
T ss_dssp ------------EEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECCSCGGG-------------------GGG
T ss_pred ------------EEEEEcCCCeEEEEECCCCceeeEecCCC--ceEEEEEEcCccccc-------------------chh
Confidence 79999999999999999998888887664 468888888754210 000
Q ss_pred hhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCC
Q 001295 648 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS 727 (1106)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~ 727 (1106)
..
T Consensus 295 ~~------------------------------------------------------------------------------ 296 (410)
T 1vyh_C 295 EA------------------------------------------------------------------------------ 296 (410)
T ss_dssp GC------------------------------------------------------------------------------
T ss_pred hh------------------------------------------------------------------------------
Confidence 00
Q ss_pred CCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCC
Q 001295 728 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS 807 (1106)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 807 (1106)
. +
T Consensus 297 --------------~------------~---------------------------------------------------- 298 (410)
T 1vyh_C 297 --------------T------------G---------------------------------------------------- 298 (410)
T ss_dssp --------------C------------S----------------------------------------------------
T ss_pred --------------c------------c----------------------------------------------------
Confidence 0 0
Q ss_pred CCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceE
Q 001295 808 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 886 (1106)
Q Consensus 808 ~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~ 886 (1106)
. .......++.+|++|+ |++|++||+.++.++..+.+|...|++++|+| ++++|++|+.||.|++||+.++++
T Consensus 299 -~----~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~D~~i~vwd~~~~~~ 372 (410)
T 1vyh_C 299 -S----ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRC 372 (410)
T ss_dssp -C----C-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCC
T ss_pred -c----cccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCce
Confidence 0 0001112467888888 89999999999999999999999999999999 899999999999999999999999
Q ss_pred EEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCC
Q 001295 887 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 924 (1106)
Q Consensus 887 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~ 924 (1106)
+..+.+|...|++++|+|++.+|++|+.|++|++|+++
T Consensus 373 ~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 373 MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 99999999999999999999999999999999999863
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=7.1e-39 Score=356.51 Aligned_cols=294 Identities=20% Similarity=0.322 Sum_probs=253.4
Q ss_pred cceeeec-cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEE
Q 001295 341 KTVTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 419 (1106)
Q Consensus 341 ~~~~~~~-~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 419 (1106)
.+....+ +|.+.|++++|+|+|+ +|++|+.||+|+|||+.+++.+.. +..|...|.+++
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~~ 104 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCA 104 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEEE
Confidence 3344444 4999999999999999 599999999999999999887653 578899999999
Q ss_pred EccCCCEEEEEeCCCeEEEEEccCCce-eeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEe
Q 001295 420 WSPDGSLFGVAYSRHIVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 498 (1106)
Q Consensus 420 ~spdg~~las~~~d~~v~iwd~~~~~~-~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 498 (1106)
|+|+|++|++|+.|+.|++||+.+++. ......+.+|.+.|.++.|++++. +++++.|++|++||+.+++.+..+.
T Consensus 105 ~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~ 181 (340)
T 1got_B 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFT 181 (340)
T ss_dssp ECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEc
Confidence 999999999999999999999987642 233446789999999999998875 8899999999999999999999999
Q ss_pred ccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCC
Q 001295 499 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 578 (1106)
Q Consensus 499 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~ 578 (1106)
+|.+.|.+++|++ ++.++++|+.|+.|++||+++......+..|...|.+++|+|+++
T Consensus 182 ~h~~~v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~-------------------- 239 (340)
T 1got_B 182 GHTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN-------------------- 239 (340)
T ss_dssp CCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSS--------------------
T ss_pred CCCCceEEEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCC--------------------
Confidence 9999999999876 457999999999999999998888777877777777777666665
Q ss_pred CEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhccccccccc
Q 001295 579 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR 658 (1106)
Q Consensus 579 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 658 (1106)
+|++++.|+.|++||+.+++.+..+........|.+++|+|+|++|++|+.||.|++||+.++ .....+
T Consensus 240 -~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~~--------- 308 (340)
T 1got_B 240 -AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVL--------- 308 (340)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEE---------
T ss_pred -EEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC-cEeeEe---------
Confidence 799999999999999999988888765554557899999999999999999999999998765 211111
Q ss_pred CCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccC
Q 001295 659 TSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP 738 (1106)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~ 738 (1106)
T Consensus 309 -------------------------------------------------------------------------------- 308 (340)
T 1got_B 309 -------------------------------------------------------------------------------- 308 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccceEEEEEcCCCceEEEeecCceEEEee
Q 001295 739 ENLRATKISRLIFTNSGNAILALASNAIHLLWK 771 (1106)
Q Consensus 739 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~ 771 (1106)
.+|...|.+++|+|++.+|++++.|+.|++|+
T Consensus 309 -~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 309 -AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp -ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -ecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 23778899999999999999999999999996
No 16
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=7.5e-39 Score=357.86 Aligned_cols=296 Identities=18% Similarity=0.283 Sum_probs=255.3
Q ss_pred ceeeec-cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEE
Q 001295 342 TVTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 420 (1106)
Q Consensus 342 ~~~~~~-~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 420 (1106)
.....+ +|.+.|++++|+|++++ |++|+.||+|+|||..+++.... +..|...|.+++|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~-l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 114 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRR-IVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACAY 114 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCE-EEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEEE
Confidence 344444 59999999999999995 99999999999999998877653 5678889999999
Q ss_pred ccCCCEEEEEeCCCeEEEEEccCCce---eeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEE
Q 001295 421 SPDGSLFGVAYSRHIVQIYSYHGGDE---VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 497 (1106)
Q Consensus 421 spdg~~las~~~d~~v~iwd~~~~~~---~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 497 (1106)
+|+|.+||+|+.|+.+++|++..... ......+.+|...|.+++|+|++. .|++++.|++|++||+++++++..+
T Consensus 115 sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~ 192 (354)
T 2pbi_B 115 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSF 192 (354)
T ss_dssp CTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEE
Confidence 99999999999999999999875421 122335778999999999999999 7999999999999999999999999
Q ss_pred eccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCC
Q 001295 498 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 577 (1106)
Q Consensus 498 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~ 577 (1106)
.+|...|.++++++++++.+|++|+.||.|++||++++.....+..|...|.+++|+|++.
T Consensus 193 ~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~------------------- 253 (354)
T 2pbi_B 193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGD------------------- 253 (354)
T ss_dssp ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-------------------
T ss_pred cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCC-------------------
Confidence 9999999999998887788999999999999999999888878877777777777666665
Q ss_pred CCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccc
Q 001295 578 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS 657 (1106)
Q Consensus 578 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 657 (1106)
+|++++.|+.|++||+++++.+..+..+.....+.+++|+|++++|++|+.|+.|++||+.++. .+..+
T Consensus 254 --~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~-~~~~l-------- 322 (354)
T 2pbi_B 254 --AFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS-RVSIL-------- 322 (354)
T ss_dssp --EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS-EEEEE--------
T ss_pred --EEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc-eEEEE--------
Confidence 7999999999999999999888877655544568899999999999999999999999987662 11111
Q ss_pred cCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceeccc
Q 001295 658 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL 737 (1106)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~ 737 (1106)
T Consensus 323 -------------------------------------------------------------------------------- 322 (354)
T 2pbi_B 323 -------------------------------------------------------------------------------- 322 (354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccceEEEEEcCCCceEEEeecCceEEEee
Q 001295 738 PENLRATKISRLIFTNSGNAILALASNAIHLLWK 771 (1106)
Q Consensus 738 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~ 771 (1106)
.+|...|.+++|+|++++|++++.|+.|++|+
T Consensus 323 --~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 323 --FGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp --CCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred --ECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 13778999999999999999999999999995
No 17
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.1e-39 Score=351.93 Aligned_cols=287 Identities=22% Similarity=0.330 Sum_probs=247.6
Q ss_pred eeccccCCeeEEEEcCC----CCceEEEEecCCCcEEEEeCCCCce--eEEEeccCCCeEEEeccccCCceEEEEEecCC
Q 001295 452 EIDAHVGGVNDIAFSHP----NKQLCVITCGDDKTIKVWDATNGAK--QYIFEGHEAPVYSVCPHHKENIQFIFSTALDG 525 (1106)
Q Consensus 452 ~l~~h~~~V~~~~~s~d----~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 525 (1106)
.+.+|.+.|++++|+|+ +. +|+||+.|++|+|||+.+++. ...+.+|...|.+++|+++ +.++++++.|+
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~--~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~--~~~l~s~s~D~ 102 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSE--TVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHT--LPIAASSSLDA 102 (321)
T ss_dssp ETTSSSSCEEEEEEC-------C--EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSS--SSEEEEEETTS
T ss_pred ecccCCCcEEEEEEecCCCCCCC--EEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCC--CCEEEEEeCCC
Confidence 46789999999999985 45 799999999999999987754 4578999999999998654 47999999999
Q ss_pred eEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEc
Q 001295 526 KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID 605 (1106)
Q Consensus 526 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 605 (1106)
+|++||+.++.....+..+...+.+++|+|++ ++|++++.|+.|++|++.+++....+.
T Consensus 103 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg---------------------~~l~~g~~dg~v~i~~~~~~~~~~~~~ 161 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS---------------------QYLATGTHVGKVNIFGVESGKKEYSLD 161 (321)
T ss_dssp EEEEEETTTTEEEEEEECCTTCCCCEEECTTS---------------------SEEEEECTTSEEEEEETTTCSEEEEEE
T ss_pred cEEEEECCCCCEEEEEeCCCccEEEEEECCCC---------------------CEEEEEcCCCcEEEEEcCCCceeEEec
Confidence 99999999877776666665555555555554 589999999999999999999888887
Q ss_pred cCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccccc
Q 001295 606 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD 685 (1106)
Q Consensus 606 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1106)
.+. ..+.+++|+|++++|++|+.||.|++||+.++. .+..
T Consensus 162 ~~~--~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~-~~~~------------------------------------- 201 (321)
T 3ow8_A 162 TRG--KFILSIAYSPDGKYLASGAIDGIINIFDIATGK-LLHT------------------------------------- 201 (321)
T ss_dssp CSS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEE-------------------------------------
T ss_pred CCC--ceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-EEEE-------------------------------------
Confidence 664 478999999999999999999999999986651 1000
Q ss_pred ccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCc
Q 001295 686 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA 765 (1106)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 765 (1106)
T Consensus 202 -------------------------------------------------------------------------------- 201 (321)
T 3ow8_A 202 -------------------------------------------------------------------------------- 201 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCcee
Q 001295 766 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM 844 (1106)
Q Consensus 766 ~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~ 844 (1106)
+. +|...|.+++|+|++++|++++ |++|++||+.+++..
T Consensus 202 --------------------------------------~~--~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~ 241 (321)
T 3ow8_A 202 --------------------------------------LE--GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA 241 (321)
T ss_dssp --------------------------------------EC--CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEE
T ss_pred --------------------------------------Ec--ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCccee
Confidence 00 1667788999999999999998 899999999999999
Q ss_pred eeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCC
Q 001295 845 ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 924 (1106)
Q Consensus 845 ~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~ 924 (1106)
..+.+|...|.+++|+| ++++|++|+.||+|++||+.+++++..+.+|.+.|++++|+|++++|++++.|++|++||..
T Consensus 242 ~~~~~h~~~v~~~~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 242 GTLSGHASWVLNVAFCP-DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999 89999999999999999999999999999999999999999999999999999999999963
No 18
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.9e-38 Score=348.93 Aligned_cols=287 Identities=18% Similarity=0.296 Sum_probs=249.6
Q ss_pred cCCCCcCeEEEEEccC----CCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcE
Q 001295 408 VKDPGVSVNRVIWSPD----GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 483 (1106)
Q Consensus 408 ~~~h~~~V~~l~~spd----g~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i 483 (1106)
+.+|.+.|++++|+|+ +++|++|+.|++|+|||+.+++. .....+.+|...|.+++|++++. ++++++.|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i 104 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHI 104 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcE
Confidence 5799999999999985 67999999999999999987653 23346889999999999999999 89999999999
Q ss_pred EEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEe
Q 001295 484 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 563 (1106)
Q Consensus 484 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~ 563 (1106)
++||+.+++.+..+..|...+.+++|++ ++++|++++.||.|++||+++......+..+...+.+++|+|+++
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~----- 177 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSP--DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGK----- 177 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECT--TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSS-----
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECC--CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCC-----
Confidence 9999999999999999999999999865 457999999999999999998887777777666666666666554
Q ss_pred eeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCc
Q 001295 564 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 643 (1106)
Q Consensus 564 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 643 (1106)
+|++++.|+.|++||+.+++.+..+..+ ...|.+++|+|++++|++|+.|+.|++||+.++.
T Consensus 178 ----------------~lasg~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~ 239 (321)
T 3ow8_A 178 ----------------YLASGAIDGIINIFDIATGKLLHTLEGH--AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN 239 (321)
T ss_dssp ----------------EEEEEETTSCEEEEETTTTEEEEEECCC--SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC
T ss_pred ----------------EEEEEcCCCeEEEEECCCCcEEEEEccc--CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc
Confidence 8999999999999999999999998866 4479999999999999999999999999986541
Q ss_pred hhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEec
Q 001295 644 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 723 (1106)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~ 723 (1106)
....
T Consensus 240 -~~~~--------------------------------------------------------------------------- 243 (321)
T 3ow8_A 240 -LAGT--------------------------------------------------------------------------- 243 (321)
T ss_dssp -EEEE---------------------------------------------------------------------------
T ss_pred -eeEE---------------------------------------------------------------------------
Confidence 0000
Q ss_pred CCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccc
Q 001295 724 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 803 (1106)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 803 (1106)
T Consensus 244 -------------------------------------------------------------------------------- 243 (321)
T 3ow8_A 244 -------------------------------------------------------------------------------- 243 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEe
Q 001295 804 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 881 (1106)
Q Consensus 804 ~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~ 881 (1106)
+ .+|...|.+++|+|++++|++++ |++|++||+.+++++.++.+|...|.+++|+| ++++|++++.||.|+|||.
T Consensus 244 ~--~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 244 L--SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG-NGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp E--CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCCEEEEEC
T ss_pred E--cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEeC
Confidence 0 01777889999999999999998 89999999999999999999999999999999 8999999999999999996
No 19
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-38 Score=367.89 Aligned_cols=339 Identities=15% Similarity=0.195 Sum_probs=274.1
Q ss_pred CCCCcCeEEEEEccCCC-EEEEEeCCCeEEEEEc----cCCce------eeee-eeec------cccCCeeEEEEcCCCC
Q 001295 409 KDPGVSVNRVIWSPDGS-LFGVAYSRHIVQIYSY----HGGDE------VRQH-LEID------AHVGGVNDIAFSHPNK 470 (1106)
Q Consensus 409 ~~h~~~V~~l~~spdg~-~las~~~d~~v~iwd~----~~~~~------~~~~-~~l~------~h~~~V~~~~~s~d~~ 470 (1106)
..|.+.|.+++|+|+|+ +||+|+.|+.|++||+ .+++. ...+ ..+. +|.+.|.+++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 45668999999999999 9999999999999999 88772 2211 1111 2688999999999999
Q ss_pred ceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCe---
Q 001295 471 QLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW--- 547 (1106)
Q Consensus 471 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--- 547 (1106)
+|++|+.|+.|++|| .+++.+..+.+|...|.+++|++ ++.+|++++.||.|++||+.+......+..+...
T Consensus 122 --~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 196 (425)
T 1r5m_A 122 --SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS 196 (425)
T ss_dssp --EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred --EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence 899999999999999 78888999999999999999865 4579999999999999999988777766665543
Q ss_pred eEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEE
Q 001295 548 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV 627 (1106)
Q Consensus 548 v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 627 (1106)
+....+.+++. .+..+.|++++ .+++++.++.|++||+.+++.+..+..+ ...|.+++|+|++++|++
T Consensus 197 ~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~ 264 (425)
T 1r5m_A 197 INAENHSGDGS---------LGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGH--HGPISVLEFNDTNKLLLS 264 (425)
T ss_dssp ---------CC---------CBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCC--SSCEEEEEEETTTTEEEE
T ss_pred eeeccccCCcc---------eeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccC--CCceEEEEECCCCCEEEE
Confidence 11111112111 24455555543 4889999999999999999998888766 447999999999999999
Q ss_pred EeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCC
Q 001295 628 STNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK 707 (1106)
Q Consensus 628 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (1106)
++.||.|++||+.++. ....
T Consensus 265 ~~~d~~i~i~d~~~~~-~~~~----------------------------------------------------------- 284 (425)
T 1r5m_A 265 ASDDGTLRIWHGGNGN-SQNC----------------------------------------------------------- 284 (425)
T ss_dssp EETTSCEEEECSSSBS-CSEE-----------------------------------------------------------
T ss_pred EcCCCEEEEEECCCCc-cceE-----------------------------------------------------------
Confidence 9999999999876541 0000
Q ss_pred ccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCcccccc
Q 001295 708 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV 787 (1106)
Q Consensus 708 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 787 (1106)
T Consensus 285 -------------------------------------------------------------------------------- 284 (425)
T 1r5m_A 285 -------------------------------------------------------------------------------- 284 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCce
Q 001295 788 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 866 (1106)
Q Consensus 788 ~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~ 866 (1106)
+ ..|...|.+++|+|++ ++++++ |+.|++||+.+++.+..+..|...|.+++|+| ++++
T Consensus 285 ----------------~--~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~ 344 (425)
T 1r5m_A 285 ----------------F--YGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ-DGQK 344 (425)
T ss_dssp ----------------E--CCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT-TSSE
T ss_pred ----------------e--cCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC-CCCE
Confidence 0 0156678889999988 778777 89999999999999999999999999999999 8999
Q ss_pred EEEeeCCCcEEEEEeecce--------------------EEEEecCccc--CeeEEEEecCCCEEEEEcCCCcEEEEeCC
Q 001295 867 IAIGMDDSSIQIYNVRVDE--------------------VKSKLKGHSK--RITGLAFSHALNVLVSSGADSQLCVWSSD 924 (1106)
Q Consensus 867 la~g~~dg~v~iwd~~~~~--------------------~~~~l~~h~~--~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~ 924 (1106)
|++++.||.|++||+.+++ ++..+.+|.. .|++++|+|++++|++++.||.|++|+++
T Consensus 345 l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 345 YAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred EEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 9999999999999999988 8999999977 99999999999999999999999999986
No 20
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6e-38 Score=349.05 Aligned_cols=286 Identities=14% Similarity=0.259 Sum_probs=245.5
Q ss_pred eeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEE
Q 001295 450 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 529 (1106)
Q Consensus 450 ~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 529 (1106)
..++.+|.+.|.+++|+|+++ +|++|+.|++|++||+.+++.+..+..|...|.+++|++ ++.+|++|+.|+.|++
T Consensus 48 ~~~l~gH~~~v~~~~~s~d~~--~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~s~~~d~~v~i 123 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGTDSR--LLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP--SGNYVACGGLDNICSI 123 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSS--EEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECT--TSSEEEEEETTCEEEE
T ss_pred heeecCCCCceEEEEECCCCC--EEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECC--CCCEEEEEeCCCeEEE
Confidence 346889999999999999999 899999999999999999999999999999999999866 4579999999999999
Q ss_pred EeCCCCCc----eeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEc
Q 001295 530 WLYDNLGS----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID 605 (1106)
Q Consensus 530 wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 605 (1106)
||+.+... ...+..|...+.++.|++++. +++++.|+.|++||+.+++.+..+.
T Consensus 124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~----------------------l~s~s~d~~i~~wd~~~~~~~~~~~ 181 (340)
T 1got_B 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ----------------------IVTSSGDTTCALWDIETGQQTTTFT 181 (340)
T ss_dssp EETTTCSBSCEEEEEEECCSSCEEEEEEEETTE----------------------EEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EECccCCCcceeEEEecCCCccEEEEEECCCCc----------------------EEEEECCCcEEEEECCCCcEEEEEc
Confidence 99987542 234556666677777666654 8999999999999999999999988
Q ss_pred cCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccccc
Q 001295 606 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD 685 (1106)
Q Consensus 606 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1106)
+| ...|.+++|+|+++++++|+.|+.|++||+.++. ....
T Consensus 182 ~h--~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~-~~~~------------------------------------- 221 (340)
T 1got_B 182 GH--TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-CRQT------------------------------------- 221 (340)
T ss_dssp CC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS-EEEE-------------------------------------
T ss_pred CC--CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe-eEEE-------------------------------------
Confidence 66 4479999999999999999999999999986551 0000
Q ss_pred ccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCc
Q 001295 686 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA 765 (1106)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 765 (1106)
T Consensus 222 -------------------------------------------------------------------------------- 221 (340)
T 1got_B 222 -------------------------------------------------------------------------------- 221 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCcee
Q 001295 766 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM 844 (1106)
Q Consensus 766 ~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~ 844 (1106)
+ .+|...|.+++|+|++++|++++ ||+|++||+.+++.+
T Consensus 222 --------------------------------------~--~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~ 261 (340)
T 1got_B 222 --------------------------------------F--TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261 (340)
T ss_dssp --------------------------------------E--CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred --------------------------------------E--cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE
Confidence 0 01666788888888888888888 788888888877766
Q ss_pred eeecC--CCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEe
Q 001295 845 ATFMP--PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922 (1106)
Q Consensus 845 ~~~~~--~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd 922 (1106)
..+.. +...|++++|+| ++++|++|+.||.|++||+.+++.+..+.+|.+.|++++|+|||.+|+||+.|++|+|||
T Consensus 262 ~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 262 MTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEccCCcccceEEEEECC-CCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 66542 334799999999 999999999999999999999999999999999999999999999999999999999997
No 21
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6.4e-38 Score=345.11 Aligned_cols=303 Identities=20% Similarity=0.271 Sum_probs=247.0
Q ss_pred eeec-cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc
Q 001295 344 TRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 422 (1106)
Q Consensus 344 ~~~~-~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 422 (1106)
..++ +|.+.|++++|+|++..+|++|+.|++|++||+.+........+ ..+.+|...|.+++|+|
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~--------------~~~~~h~~~v~~~~~s~ 75 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV--------------RSFKGHSHIVQDCTLTA 75 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEE--------------EEEECCSSCEEEEEECT
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccc--------------eEEeCCcccEEEEEECC
Confidence 3344 49999999999998744799999999999999875433211111 14689999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCC
Q 001295 423 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 502 (1106)
Q Consensus 423 dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 502 (1106)
+|++|++|+.|++|+|||+.+++.+. .+.+|...|.+++|+|++. +|++|+.|++|++||++ ++++..+.+|..
T Consensus 76 dg~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~ 149 (319)
T 3frx_A 76 DGAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLGHND 149 (319)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECCCSS
T ss_pred CCCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEeccCC
Confidence 99999999999999999999988665 6889999999999999999 89999999999999985 667889999999
Q ss_pred CeEEEeccccC----CceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCC
Q 001295 503 PVYSVCPHHKE----NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 578 (1106)
Q Consensus 503 ~v~~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~ 578 (1106)
.|.++.+.+.. ++..+++++.|+.|++||+++......+..|...|.+++|+|+++
T Consensus 150 ~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~-------------------- 209 (319)
T 3frx_A 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT-------------------- 209 (319)
T ss_dssp CEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSS--------------------
T ss_pred cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCC--------------------
Confidence 99999987643 345899999999999999998777777777777777776666665
Q ss_pred CEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhccccccccc
Q 001295 579 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR 658 (1106)
Q Consensus 579 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 658 (1106)
+|++++.|+.|++||+.+++.+..+..+ ..|.+++|+|++.++++++.+ .+++|++... .....+..+...
T Consensus 210 -~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~-~~~~~~~~~~~~--- 280 (319)
T 3frx_A 210 -LIASAGKDGEIMLWNLAAKKAMYTLSAQ---DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ-YLVDDLRPEFAG--- 280 (319)
T ss_dssp -EEEEEETTCEEEEEETTTTEEEEEEECC---SCEEEEEECSSSSEEEEEETT-EEEEEEETTE-EEEEEECCCCTT---
T ss_pred -EEEEEeCCCeEEEEECCCCcEEEEecCC---CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC-eeeeccCccccc---
Confidence 7999999999999999999999888754 359999999999999998865 5999998765 222111100000
Q ss_pred CCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccC
Q 001295 659 TSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP 738 (1106)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~ 738 (1106)
.
T Consensus 281 -------------------------------------------------------------------------------~ 281 (319)
T 3frx_A 281 -------------------------------------------------------------------------------Y 281 (319)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred ccccccceEEEEEcCCCceEEEeecCceEEEeeccc
Q 001295 739 ENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR 774 (1106)
Q Consensus 739 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 774 (1106)
...+...+.+++|+|+|++|++++.||.|++|++.+
T Consensus 282 ~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 282 SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp CGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred ccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 012566789999999999999999999999999763
No 22
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1e-37 Score=341.13 Aligned_cols=252 Identities=21% Similarity=0.357 Sum_probs=217.9
Q ss_pred eeecc-CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc
Q 001295 344 TRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 422 (1106)
Q Consensus 344 ~~~~~-h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 422 (1106)
..++. |.+.|++++|||+|++ |++|+.||+|+|||+.+++.+.. +..|...|.+++|+|
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~-l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~~~ 65 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPW-VLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKFIA 65 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSE-EEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEEG
T ss_pred EEeecCCCCceEEEEECCCCCE-EEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEEeC
Confidence 34444 9999999999999995 99999999999999999877653 678999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC-ceeEEEeccC
Q 001295 423 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHE 501 (1106)
Q Consensus 423 dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~ 501 (1106)
++++|++|+.|++|++||+.+++.+. .+.+|.+.|.+++|+|+++ +|++|+.|++|++||++++ .....+.+|.
T Consensus 66 ~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~ 140 (304)
T 2ynn_A 66 RKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHE 140 (304)
T ss_dssp GGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECCCC
T ss_pred CCCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcccC
Confidence 99999999999999999999988665 6889999999999999999 8999999999999999987 4557889999
Q ss_pred CCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeC-CCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCE
Q 001295 502 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 580 (1106)
Q Consensus 502 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~ 580 (1106)
..|.+++|+|. ++.+|++|+.|++|++||++.......+.. +...+..+.+++. +++.+
T Consensus 141 ~~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-------------------~~~~~ 200 (304)
T 2ynn_A 141 HFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL-------------------PDKPY 200 (304)
T ss_dssp SCEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCS-------------------TTCCE
T ss_pred CcEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEc-------------------CCCCE
Confidence 99999999764 346899999999999999987665554432 3344555554432 24568
Q ss_pred EEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 581 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 581 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
+++++.|+.|++||+.+++++..+.+|. ..|.+++|+|++++|++|+.||+|++||..++
T Consensus 201 l~s~s~D~~i~iWd~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 201 MITASDDLTIKIWDYQTKSCVATLEGHM--SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred EEEEcCCCeEEEEeCCCCccceeeCCCC--CCEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 9999999999999999999999998774 47999999999999999999999999998776
No 23
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.8e-38 Score=353.47 Aligned_cols=319 Identities=15% Similarity=0.202 Sum_probs=230.4
Q ss_pred ccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCcccccc
Q 001295 708 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV 787 (1106)
Q Consensus 708 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 787 (1106)
.++.++.+.....|++..... ..|...|.+++|+|||++|++++.|.. ++||..
T Consensus 18 ~~~~~~g~~~~~~w~~p~~~p-----------~~H~~~V~~v~fSpDG~~las~s~d~~-~~wd~~-------------- 71 (357)
T 4g56_B 18 LYFQSNGSSKGSAWGRPVTAP-----------ACMEVQIGAVRYRRDGALLLAASSLSS-RTWGGS-------------- 71 (357)
T ss_dssp ---------------------------------CCCSEEEEEEECSSSCEEEEEECSSS-SSCCEE--------------
T ss_pred eEEecCCCccccccCCCCCCc-----------ccccCCEEEEEECCCCCEEEEEcCCCC-ccccCe--------------
Confidence 445555567778888753211 348899999999999999999998532 344321
Q ss_pred CccccCCCCCCccccc-cCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceee----eecCCCCCeeEEEEecC
Q 001295 788 APQLWQPPSGIMMTND-VTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMA----TFMPPPPAATFLAFHPQ 862 (1106)
Q Consensus 788 ~~~~w~~~~~~~~~~~-~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~----~~~~~~~~v~~l~~s~~ 862 (1106)
+.+|+..++...... ....+|...|.+++|+|++++++++.||+|+|||+.+++... ...+|...|++++|+|
T Consensus 72 -v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp- 149 (357)
T 4g56_B 72 -IWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS- 149 (357)
T ss_dssp -EEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-
T ss_pred -EEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-
Confidence 234444444321111 111237888999999999987776669999999998876543 3457899999999999
Q ss_pred CCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCC-EEEEEcCCCcEEEEeCCCcccccceeecccCCCC
Q 001295 863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT 941 (1106)
Q Consensus 863 d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~-~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 941 (1106)
++++|++|+.||.|++||+.+++++..+.+|...|++++|++++. ++++++.|++|++||+.+++....... ..+
T Consensus 150 dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~---~~~- 225 (357)
T 4g56_B 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF---CAS- 225 (357)
T ss_dssp SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC---TTC-
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee---ccc-
Confidence 899999999999999999999999999999999999999999875 789999999999999998654322111 111
Q ss_pred CCCCCCceEEEcCCC-cEEEE-EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCC-CEEEEEEcCCeEEEEEcCC
Q 001295 942 PTAQSDTRVQFHQDQ-IHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus 942 ~~~~~i~~~~~s~dg-~~l~~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~-~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
...+.+++|+|++ .+|++ +.|+.|++||+.+++++..+. +|...|++++|+|++ ++||+|+.|++|+|||+.+
T Consensus 226 --~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~ 301 (357)
T 4g56_B 226 --DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA--VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF 301 (357)
T ss_dssp --CSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC--CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred --cccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe--ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence 1367899999985 56777 478999999999999888876 889999999999987 5799999999999999999
Q ss_pred ceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295 1019 LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus 1019 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
++.+..+. | ...|. +++|+|.|+.+|++++.||+|++|++.+..
T Consensus 302 ~~~~~~~~--------H-~~~V~--~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 302 SEVFRDLS--------H-RDFVT--GVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp CEEEEECC--------C-SSCEE--EEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred CcEeEECC--------C-CCCEE--EEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 98876542 3 33366 899999889999999999999999997654
No 24
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=346.75 Aligned_cols=208 Identities=16% Similarity=0.236 Sum_probs=173.5
Q ss_pred ccCCCCc-CeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEE
Q 001295 407 LVKDPGV-SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 485 (1106)
Q Consensus 407 ~~~~h~~-~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~i 485 (1106)
.+.+|.. .|++++|+|+|++||+|+.|++|+|||+.++..........+|...|.+++|+|+++ +|++|+.|++|++
T Consensus 10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~--~l~s~s~D~~v~i 87 (345)
T 3fm0_A 10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN--YLASASFDATTCI 87 (345)
T ss_dssp EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS--EEEEEETTSCEEE
T ss_pred eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC--EEEEEECCCcEEE
Confidence 4678887 999999999999999999999999999998765443334578999999999999999 8999999999999
Q ss_pred EeCCCC--ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCce---eEeeCCCCeeEEEEEecCCCeE
Q 001295 486 WDATNG--AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR---VDYEAPGRWCTTMAYSADGTRT 560 (1106)
Q Consensus 486 wd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~~ 560 (1106)
||+.++ +++..+.+|...|.+++|++ ++++|++|+.|+.|++||++..... ..+..|...|.+++|
T Consensus 88 w~~~~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~------- 158 (345)
T 3fm0_A 88 WKKNQDDFECVTTLEGHENEVKSVAWAP--SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVW------- 158 (345)
T ss_dssp EEECCC-EEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEE-------
T ss_pred EEccCCCeEEEEEccCCCCCceEEEEeC--CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEE-------
Confidence 998876 45788999999999999976 4579999999999999999875432 234445555555555
Q ss_pred EEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCccee--EEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEE
Q 001295 561 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL--TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 638 (1106)
Q Consensus 561 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 638 (1106)
+|++.+|++++.|+.|++||..+++.. ..+.+| ...|.+++|+|+|++|++++.|++|++|+
T Consensus 159 --------------~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h--~~~v~~l~~sp~g~~l~s~s~D~~v~iW~ 222 (345)
T 3fm0_A 159 --------------HPSQELLASASYDDTVKLYREEEDDWVCCATLEGH--ESTVWSLAFDPSGQRLASCSDDRTVRIWR 222 (345)
T ss_dssp --------------CSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred --------------CCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC--CCceEEEEECCCCCEEEEEeCCCeEEEec
Confidence 455558999999999999999887644 455544 56899999999999999999999999998
Q ss_pred ccC
Q 001295 639 TSD 641 (1106)
Q Consensus 639 ~~~ 641 (1106)
...
T Consensus 223 ~~~ 225 (345)
T 3fm0_A 223 QYL 225 (345)
T ss_dssp EEC
T ss_pred ccc
Confidence 643
No 25
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.2e-37 Score=338.39 Aligned_cols=289 Identities=20% Similarity=0.278 Sum_probs=248.1
Q ss_pred eeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEE
Q 001295 451 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 530 (1106)
Q Consensus 451 ~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 530 (1106)
.++.+|.+.|.+++|+|+++ +|++|+.||+|++||+.++..+..+.+|..+|.+++|+++. ++|++|+.|+.|++|
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~--~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEP--WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK--NWIIVGSDDFRIRVF 82 (304)
T ss_dssp EEEEEECSCEEEEEECSSSS--EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG--TEEEEEETTSEEEEE
T ss_pred EeecCCCCceEEEEECCCCC--EEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCC--CEEEEECCCCEEEEE
Confidence 36889999999999999999 89999999999999999999999999999999999987654 799999999999999
Q ss_pred eCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCc-ceeEEEccCCC
Q 001295 531 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV-QLLTSIDADGG 609 (1106)
Q Consensus 531 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~ 609 (1106)
|+.+++....+..|...|.+++|+|+++ ++++++.|++|++||+.++ .....+.+|
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~---------------------~l~sgs~D~~v~lWd~~~~~~~~~~~~~h-- 139 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKP---------------------YVLSGSDDLTVKLWNWENNWALEQTFEGH-- 139 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSS---------------------EEEEEETTSCEEEEEGGGTTEEEEEECCC--
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCCCC---------------------EEEEECCCCeEEEEECCCCcchhhhhccc--
Confidence 9999888888888888777777777665 7999999999999999887 445566665
Q ss_pred CCCcCeEEEcc-CCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccc
Q 001295 610 LPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAA 688 (1106)
Q Consensus 610 ~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1106)
...|.+++|+| ++.+|++|+.|++|++||+.++.... .
T Consensus 140 ~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~-~---------------------------------------- 178 (304)
T 2ynn_A 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF-T---------------------------------------- 178 (304)
T ss_dssp CSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSE-E----------------------------------------
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccc-e----------------------------------------
Confidence 45799999999 68999999999999999986541000 0
Q ss_pred cccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEE
Q 001295 689 SMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL 768 (1106)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 768 (1106)
+
T Consensus 179 ---------------------------------------------------------------------~---------- 179 (304)
T 2ynn_A 179 ---------------------------------------------------------------------L---------- 179 (304)
T ss_dssp ---------------------------------------------------------------------E----------
T ss_pred ---------------------------------------------------------------------e----------
Confidence 0
Q ss_pred EeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEec--CCCEEEEEe-CCeEEEEEcCCCceee
Q 001295 769 LWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK--NDSYVMSAS-GGKISLFNMMTFKTMA 845 (1106)
Q Consensus 769 iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~--~~~~l~~~s-dg~i~vwd~~~~~~~~ 845 (1106)
. ..+...+..+.++| ++++|++++ |++|++||+.+++++.
T Consensus 180 -----------------------------------~--~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~ 222 (304)
T 2ynn_A 180 -----------------------------------T--TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222 (304)
T ss_dssp -----------------------------------E--CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEE
T ss_pred -----------------------------------c--cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccce
Confidence 0 01344566666665 678999998 8999999999999999
Q ss_pred eecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCC--EEEEEcCCCcEEEEeC
Q 001295 846 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN--VLVSSGADSQLCVWSS 923 (1106)
Q Consensus 846 ~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~--~l~s~s~Dg~i~vwd~ 923 (1106)
++.+|...|.+++|+| ++.+|++|+.||+|++||+.+++++..+..|...+.+++|+|++. ++++|+.|| +.+|++
T Consensus 223 ~~~~h~~~v~~~~~~p-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~ 300 (304)
T 2ynn_A 223 TLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSL 300 (304)
T ss_dssp EEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEEC
T ss_pred eeCCCCCCEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEe
Confidence 9999999999999999 899999999999999999999999999999999999999999875 588887766 778887
Q ss_pred CC
Q 001295 924 DG 925 (1106)
Q Consensus 924 ~~ 925 (1106)
..
T Consensus 301 ~~ 302 (304)
T 2ynn_A 301 GN 302 (304)
T ss_dssp C-
T ss_pred cc
Confidence 65
No 26
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.8e-38 Score=354.94 Aligned_cols=322 Identities=14% Similarity=0.181 Sum_probs=233.0
Q ss_pred EEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeC-
Q 001295 354 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS- 432 (1106)
Q Consensus 354 ~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~- 432 (1106)
..+.+.+++. ++.++.+.....|++.... ...|+..|.+++|||||++||+|+.
T Consensus 9 sg~d~g~~~~--~~~~~g~~~~~~w~~p~~~-----------------------p~~H~~~V~~v~fSpDG~~las~s~d 63 (357)
T 4g56_B 9 SGVDLGTENL--YFQSNGSSKGSAWGRPVTA-----------------------PACMEVQIGAVRYRRDGALLLAASSL 63 (357)
T ss_dssp --------------------------------------------------------CCCSEEEEEEECSSSCEEEEEECS
T ss_pred cCCCCCccce--EEecCCCccccccCCCCCC-----------------------cccccCCEEEEEECCCCCEEEEEcCC
Confidence 4455666665 3444445777888875421 3579999999999999999999997
Q ss_pred -----CCeEEEEEccCCceeee-eeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCcee----EEEeccCC
Q 001295 433 -----RHIVQIYSYHGGDEVRQ-HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ----YIFEGHEA 502 (1106)
Q Consensus 433 -----d~~v~iwd~~~~~~~~~-~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~~~h~~ 502 (1106)
|+.|++|+..++..... .....+|...|.+++|+|+++ +++++.||+|+|||+.+++.. ....+|..
T Consensus 64 ~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~---~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~ 140 (357)
T 4g56_B 64 SSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG---ILVASDSGAVELWEILEKESLLVNKFAKYEHDD 140 (357)
T ss_dssp SSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE---EEEEETTSCEEEC--------CCCCEEECCCSS
T ss_pred CCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC---EEEEECCCEEEEeeccccceeEEEeeccCCCCC
Confidence 78899999887754322 123457899999999999986 567788999999999987754 34558999
Q ss_pred CeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEE
Q 001295 503 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 582 (1106)
Q Consensus 503 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 582 (1106)
.|.+++|++ ++++|++|+.|+.|++||++++.....+..|...|.+++|++++. ..++
T Consensus 141 ~V~~v~~sp--dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~--------------------~~~~ 198 (357)
T 4g56_B 141 IVKTLSVFS--DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD--------------------TIFL 198 (357)
T ss_dssp CEEEEEECS--SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCS--------------------SCEE
T ss_pred CEEEEEECC--CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC--------------------ceee
Confidence 999999865 457999999999999999999888888888888888888888764 2588
Q ss_pred EEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccC-CCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCC
Q 001295 583 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD-GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE 661 (1106)
Q Consensus 583 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 661 (1106)
+++.|+.|++||+++++....+....+...+.+++|+|+ +.+|++|+.|+.|++||+.++ +..+.+
T Consensus 199 s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~~~~~------------ 265 (357)
T 4g56_B 199 SCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-DSAQTS------------ 265 (357)
T ss_dssp EEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-GGCEEE------------
T ss_pred eeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC-cEeEEE------------
Confidence 999999999999999988877766656667899999996 578999999999999998765 111100
Q ss_pred CCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccc
Q 001295 662 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 741 (1106)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 741 (1106)
T Consensus 266 -------------------------------------------------------------------------------- 265 (357)
T 4g56_B 266 -------------------------------------------------------------------------------- 265 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295 742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 821 (1106)
Q Consensus 742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 821 (1106)
..|...|++++|+|+
T Consensus 266 -----------------------------------------------------------------~~~~~~v~~l~~sp~ 280 (357)
T 4g56_B 266 -----------------------------------------------------------------AVHSQNITGLAYSYH 280 (357)
T ss_dssp -----------------------------------------------------------------CCCSSCEEEEEECSS
T ss_pred -----------------------------------------------------------------eccceeEEEEEEcCC
Confidence 015667888888887
Q ss_pred C-CEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecc
Q 001295 822 D-SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 884 (1106)
Q Consensus 822 ~-~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~ 884 (1106)
+ ++|++++ |++|+|||+.+++++..+ +|...|++++|+|.++.+||+|+.||+|++|++.+.
T Consensus 281 ~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 281 SSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp SSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred CCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 6 5788888 899999999988877655 699999999999877899999999999999999764
No 27
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.1e-38 Score=357.13 Aligned_cols=299 Identities=13% Similarity=0.217 Sum_probs=244.6
Q ss_pred ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295 407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 486 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 486 (1106)
.+.+|.+.|++++|+|++++|++|+.|++|+|||+.+++... .+.+|...|.+++|+|+++ +|++|+.|+.|++|
T Consensus 61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw 135 (380)
T 3iz6_a 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIF 135 (380)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEE
T ss_pred cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEE
Confidence 478999999999999999999999999999999999987655 6788999999999999999 89999999999999
Q ss_pred eCCCCc-------eeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEe-----eCCCCeeEEEEEe
Q 001295 487 DATNGA-------KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-----EAPGRWCTTMAYS 554 (1106)
Q Consensus 487 d~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~s 554 (1106)
|+.+.. ....+.+|.+.|.++.|.+..+ ..|++|+.|++|++||+.++.....+ ..|...|.+++++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 214 (380)
T 3iz6_a 136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE-TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214 (380)
T ss_dssp ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSS-SCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred ECCCCccccCCccceeeccCCCcceEEEEEecCCC-CEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence 987532 3456889999999999876543 57999999999999999987766555 3344445555544
Q ss_pred cCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECC-CcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCc
Q 001295 555 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD-SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG 633 (1106)
Q Consensus 555 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 633 (1106)
+ ++++++++|+.|+.|++||++ .++.+..+.+| ...|.+++|+|++++|++|+.||+
T Consensus 215 ~--------------------~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h--~~~v~~v~~~p~~~~l~s~s~D~~ 272 (380)
T 3iz6_a 215 S--------------------LNANMFISGSCDTTVRLWDLRITSRAVRTYHGH--EGDINSVKFFPDGQRFGTGSDDGT 272 (380)
T ss_dssp S--------------------SSCCEEEEEETTSCEEEEETTTTCCCCEEECCC--SSCCCEEEECTTSSEEEEECSSSC
T ss_pred c--------------------CCCCEEEEEECCCeEEEEECCCCCcceEEECCc--CCCeEEEEEecCCCeEEEEcCCCe
Confidence 3 145589999999999999997 45777888766 457999999999999999999999
Q ss_pred EEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCcccccc
Q 001295 634 IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEE 713 (1106)
Q Consensus 634 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 713 (1106)
|++||+.++. .+..+..+
T Consensus 273 i~lwd~~~~~-~~~~~~~~------------------------------------------------------------- 290 (380)
T 3iz6_a 273 CRLFDMRTGH-QLQVYNRE------------------------------------------------------------- 290 (380)
T ss_dssp EEEEETTTTE-EEEEECCC-------------------------------------------------------------
T ss_pred EEEEECCCCc-EEEEeccc-------------------------------------------------------------
Confidence 9999997762 11111000
Q ss_pred CCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccC
Q 001295 714 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 793 (1106)
Q Consensus 714 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~ 793 (1106)
+..
T Consensus 291 ---------------------------------------~~~-------------------------------------- 293 (380)
T 3iz6_a 291 ---------------------------------------PDR-------------------------------------- 293 (380)
T ss_dssp ---------------------------------------CSS--------------------------------------
T ss_pred ---------------------------------------ccc--------------------------------------
Confidence 000
Q ss_pred CCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeee----cCCCCCeeEEEEecCCCceEE
Q 001295 794 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF----MPPPPAATFLAFHPQDNNIIA 868 (1106)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~----~~~~~~v~~l~~s~~d~~~la 868 (1106)
. ..+...|++++|+|+|++|++|+ ||.|++||+.+++....+ .+|.+.|++++|+| ++++|+
T Consensus 294 ----------~--~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~ 360 (380)
T 3iz6_a 294 ----------N--DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSS-DGSALC 360 (380)
T ss_dssp ----------S--CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECS-SSSEEE
T ss_pred ----------c--ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECC-CCCEEE
Confidence 0 01334578899999999999998 899999999888877766 67999999999999 999999
Q ss_pred EeeCCCcEEEEEeecce
Q 001295 869 IGMDDSSIQIYNVRVDE 885 (1106)
Q Consensus 869 ~g~~dg~v~iwd~~~~~ 885 (1106)
+|+.||+|+||++...+
T Consensus 361 sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 361 TGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EECTTSCEEEEECCSSS
T ss_pred EeeCCCCEEEEecCCCc
Confidence 99999999999987643
No 28
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6.7e-38 Score=354.42 Aligned_cols=302 Identities=19% Similarity=0.304 Sum_probs=250.3
Q ss_pred ceeeec-cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEE
Q 001295 342 TVTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 420 (1106)
Q Consensus 342 ~~~~~~-~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 420 (1106)
...+++ +|.+.|++++|+|+|++ |++|+.||+|+|||+.+++.... +.+|...|.+++|
T Consensus 57 ~~~~~l~gH~~~V~~~~~sp~~~~-l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v~~~~~ 116 (380)
T 3iz6_a 57 VCCRTLQGHSGKVYSLDWTPEKNW-IVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWVMECAF 116 (380)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTCCCCEE
T ss_pred EEeecccccccEEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCccceE-------------------EecCCCCEEEEEE
Confidence 344444 49999999999999995 99999999999999999877653 6789999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEEccCCce----eeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEE
Q 001295 421 SPDGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 496 (1106)
Q Consensus 421 spdg~~las~~~d~~v~iwd~~~~~~----~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 496 (1106)
+|+|++||+|+.|+.|++||+.+... ......+.+|.+.|.++.|+|++.. .|++|+.|++|++||+.+++.+..
T Consensus 117 s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~~ 195 (380)
T 3iz6_a 117 APNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRISI 195 (380)
T ss_dssp CTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEEE
T ss_pred CCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEEE
Confidence 99999999999999999999975421 1122357899999999999998654 699999999999999999999988
Q ss_pred E-----eccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCC-CCceeEeeCCCCeeEEEEEecCCCeEEEeeecccee
Q 001295 497 F-----EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 570 (1106)
Q Consensus 497 ~-----~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~ 570 (1106)
+ .+|...|.+++|++ .++.+|++|+.|+.|++||++. ......+..|...|.+++|+|+++
T Consensus 196 ~~~~~~~~h~~~v~~~~~~~-~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~------------ 262 (380)
T 3iz6_a 196 FGSEFPSGHTADVLSLSINS-LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ------------ 262 (380)
T ss_dssp ECCCSSSSCCSCEEEEEECS-SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS------------
T ss_pred eecccCCCCccCeEEEEeec-CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC------------
Confidence 8 68999999999864 3457999999999999999984 455566777777666666666654
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCC-----CCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchh
Q 001295 571 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-----LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 645 (1106)
Q Consensus 571 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 645 (1106)
+|++++.|++|++||+.+++.+..+..+.. ...|.+++|+|+|++|++|+.||.|++||..++. .
T Consensus 263 ---------~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~-~ 332 (380)
T 3iz6_a 263 ---------RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE-M 332 (380)
T ss_dssp ---------EEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCC-E
T ss_pred ---------eEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCc-e
Confidence 799999999999999999999888765422 2348899999999999999999999999987652 1
Q ss_pred hhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCC
Q 001295 646 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 725 (1106)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 725 (1106)
...+.
T Consensus 333 ~~~~~--------------------------------------------------------------------------- 337 (380)
T 3iz6_a 333 VLNLG--------------------------------------------------------------------------- 337 (380)
T ss_dssp EEEEC---------------------------------------------------------------------------
T ss_pred EEEEe---------------------------------------------------------------------------
Confidence 11110
Q ss_pred CCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeecc
Q 001295 726 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ 773 (1106)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~ 773 (1106)
....+|...|.+++|+|++++|++++.|+.|++|++.
T Consensus 338 -----------~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 338 -----------TLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp -----------CSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred -----------cccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 0002378899999999999999999999999999976
No 29
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.5e-38 Score=347.56 Aligned_cols=295 Identities=15% Similarity=0.161 Sum_probs=229.3
Q ss_pred cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCC-ccccccCCCCCCCCeeEEEEec
Q 001295 742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI-MMTNDVTDSNPEEAVPCFALSK 820 (1106)
Q Consensus 742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~~~~~~v~~l~~s~ 820 (1106)
+...|.+++|+|||++|++++ |+++++|+.... +|+..... ..........+...|.+++|+|
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 92 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLW---------------LFKDPCAAPNEGFCSAGVQTEAGVADLTWVG 92 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEE---------------EESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeeceee---------------eeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence 567799999999999777665 778888874321 11111100 0000000012567899999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCceeee----ecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCccc
Q 001295 821 NDSYVMSAS-GGKISLFNMMTFKTMAT----FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 895 (1106)
Q Consensus 821 ~~~~l~~~s-dg~i~vwd~~~~~~~~~----~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~ 895 (1106)
++ .|++|+ ||+|+|||+.+++.+.. +.+|...|++++|+| ++++|++|+.||+|++||+.+++++..+.+|.+
T Consensus 93 d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 170 (344)
T 4gqb_B 93 ER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA 170 (344)
T ss_dssp TT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence 96 455666 99999999998876544 458999999999999 999999999999999999999999999999999
Q ss_pred CeeEEEEecCC-CEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCC-CcEEEE-EeCCeEEEEec
Q 001295 896 RITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLV-VHETQLAIFET 972 (1106)
Q Consensus 896 ~V~~l~~s~d~-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d-g~~l~~-~~d~~v~i~d~ 972 (1106)
.|++++|++++ .+|++++.|++|++||+.+++.... +.. ..+. ..+.+++|+|+ +++|++ +.|+.|++||+
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~~-~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~ 244 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ--IGC-SAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVDT 244 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE--CC-----C---CCEEEEEECSSCTTEEEEEETTSEEEEEES
T ss_pred ceEEEEecCCCCCceeeeccccccccccccccceeee--eec-ceee---ccceeeeecCCCCcceEEeccCCcEEEEEC
Confidence 99999999998 4789999999999999998664321 111 1111 35789999995 567777 57899999999
Q ss_pred CCceEeeecccCCCCCCeeEEEECCCC-CEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCC
Q 001295 973 TKLECVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1051 (1106)
Q Consensus 973 ~~~~~~~~~~~~~h~~~v~~l~~s~d~-~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d 1051 (1106)
++++++..+. +|...|++++|+||+ ++||+|+.|++|+|||+.+++++. +. +|.. .|. +++|+|++
T Consensus 245 ~~~~~~~~~~--~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~-------~H~~-~V~--~v~~sp~~ 311 (344)
T 4gqb_B 245 KSTSCVLSSA--VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ-------AHRD-FVR--DATWSPLN 311 (344)
T ss_dssp CC--CCEEEE--CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC-------CCSS-CEE--EEEECSSS
T ss_pred CCCcEEEEEc--CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec-------CCCC-CEE--EEEEeCCC
Confidence 9999988876 899999999999998 579999999999999999998653 22 4433 366 89999965
Q ss_pred CCEEEEEeCCCcEEEEeecCCC
Q 001295 1052 PNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus 1052 ~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
..+|++++.||+|++|++.+..
T Consensus 312 ~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 312 HSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp TTEEEEEETTSCEEEEECCC--
T ss_pred CeEEEEEcCCCeEEEEECCCCC
Confidence 5678899999999999998754
No 30
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.9e-37 Score=338.08 Aligned_cols=214 Identities=19% Similarity=0.288 Sum_probs=184.2
Q ss_pred ccCCCCcCeEEEEEccCC-CEEEEEeCCCeEEEEEccCCce--eeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcE
Q 001295 407 LVKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGGDE--VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 483 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~spdg-~~las~~~d~~v~iwd~~~~~~--~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i 483 (1106)
.+.+|.+.|.+++|+|++ ++|++|+.|++|++|++.+... -.....+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v 89 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL 89 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence 478999999999999965 8999999999999999975332 223457889999999999999999 89999999999
Q ss_pred EEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEe
Q 001295 484 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 563 (1106)
Q Consensus 484 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~ 563 (1106)
++||+.+++.+..+.+|...|.+++|++ ++.+|++|+.|++|++||++. .....+..|...+.++.+.|.+.
T Consensus 90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~----- 161 (319)
T 3frx_A 90 RLWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEK----- 161 (319)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC-------
T ss_pred EEEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCC-----
Confidence 9999999999999999999999999865 457999999999999999964 55667778888888888887654
Q ss_pred eeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 564 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 564 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
..+++..+++++.|+.|++||+.+++....+.+| ...|.+++|+|++++|++++.||.|++||+.++
T Consensus 162 ----------~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h--~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~ 228 (319)
T 3frx_A 162 ----------ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH--NSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228 (319)
T ss_dssp --------------CCEEEEEETTSCEEEEETTTTEEEEEECCC--CSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred ----------CCCCccEEEEEeCCCEEEEEECCcchhheeecCC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 2334567999999999999999999988888766 457999999999999999999999999998665
No 31
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-37 Score=356.90 Aligned_cols=365 Identities=11% Similarity=0.140 Sum_probs=270.8
Q ss_pred eeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEec----CCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEE
Q 001295 344 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEV----GSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 419 (1106)
Q Consensus 344 ~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~----~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 419 (1106)
.....|.+.|++++|+|+|+.+||+|+.||.|+|||+ .+++.+..... ...+. ..........+|.+.|.+++
T Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~v~~~~ 115 (425)
T 1r5m_A 39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTI-IAELR--HPFALSASSGKTTNQVTCLA 115 (425)
T ss_dssp CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEE-EEEEE--CCCCCC------CBCEEEEE
T ss_pred eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccc-ccccc--ccccccccccCCCCceEEEE
Confidence 3344577999999999999934999999999999999 88773110000 00000 00000001234788999999
Q ss_pred EccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEec
Q 001295 420 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 499 (1106)
Q Consensus 420 ~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 499 (1106)
|+|++++|++++.||.|++|| .+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..+..
T Consensus 116 ~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~ 189 (425)
T 1r5m_A 116 WSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQHFEL 189 (425)
T ss_dssp ECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred EcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEEeec
Confidence 999999999999999999999 4444444 5788999999999999999 899999999999999999999999988
Q ss_pred cCCC---------------eEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEee
Q 001295 500 HEAP---------------VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 564 (1106)
Q Consensus 500 h~~~---------------v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~ 564 (1106)
+... +.+++|++. ..+++++.||.|++||+.+......+..+...+.+++|+|+++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~------ 260 (425)
T 1r5m_A 190 KETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK------ 260 (425)
T ss_dssp C---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT------
T ss_pred cccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC------
Confidence 8777 888888764 3699999999999999999887777777777777777766665
Q ss_pred eccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCch
Q 001295 565 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 644 (1106)
Q Consensus 565 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 644 (1106)
+|++++.|+.|++||+.+++.+..+..+ ...|.+++|+|++ ++++++.|+.|++||+.++ .
T Consensus 261 ---------------~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-~ 321 (425)
T 1r5m_A 261 ---------------LLLSASDDGTLRIWHGGNGNSQNCFYGH--SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN-T 321 (425)
T ss_dssp ---------------EEEEEETTSCEEEECSSSBSCSEEECCC--SSCEEEEEEETTT-EEEEEETTSEEEEEETTTT-E
T ss_pred ---------------EEEEEcCCCEEEEEECCCCccceEecCC--CccEEEEEECCCC-EEEEEeCCCcEEEEECCCC-c
Confidence 7999999999999999999999988765 4479999999999 9999999999999998765 2
Q ss_pred hhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecC
Q 001295 645 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 724 (1106)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 724 (1106)
.+..+
T Consensus 322 ~~~~~--------------------------------------------------------------------------- 326 (425)
T 1r5m_A 322 LLALS--------------------------------------------------------------------------- 326 (425)
T ss_dssp EEEEE---------------------------------------------------------------------------
T ss_pred EeEec---------------------------------------------------------------------------
Confidence 11111
Q ss_pred CCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccccc
Q 001295 725 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 804 (1106)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 804 (1106)
..|...|.+++|+|+++++++++.||.|++|++..... ..
T Consensus 327 ---------------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~----------------------~~--- 366 (425)
T 1r5m_A 327 ---------------IVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNS----------------------KS--- 366 (425)
T ss_dssp ---------------ECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC---------------------------
T ss_pred ---------------ccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCcc----------------------ce---
Confidence 11456778888888888888888888888888653110 00
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCC--CeeEEEEecCCCceEEEeeCCCcEEEEEee
Q 001295 805 TDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDSSIQIYNVR 882 (1106)
Q Consensus 805 ~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~--~v~~l~~s~~d~~~la~g~~dg~v~iwd~~ 882 (1106)
..+. ...++. +.......+..+.+|.. .|++++|+| ++++|++++.||.|++||+.
T Consensus 367 ---------~~~~---------~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 367 ---------RSLY---------GNRDGI---LNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ---------------------------------CEECCEEEEECCTTCCCCEEEEEECT-TSSEEEEEESSSCCEEEECC
T ss_pred ---------eeee---------cccccc---cCcccchhhhhhcCcccCCceEEEEccC-CCceEEEEecCceEEEEeec
Confidence 0000 001222 22223346778888866 999999999 89999999999999999975
No 32
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-39 Score=369.36 Aligned_cols=332 Identities=13% Similarity=0.187 Sum_probs=270.4
Q ss_pred cCeEEEEEccCCC-EEEEE----------eCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCC
Q 001295 413 VSVNRVIWSPDGS-LFGVA----------YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 481 (1106)
Q Consensus 413 ~~V~~l~~spdg~-~las~----------~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~ 481 (1106)
..|.+++|+|+|+ +|++| +.|+.|+|||+.+++.......+ .|...|.+++|+|+++ +|++|+.|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~--~l~~~~~dg 89 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNK--IIAGALDNG 89 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSS--CEEEEESSS
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCC--eEEEEccCC
Confidence 3688999999997 99999 88999999999987643222233 5899999999999999 799999999
Q ss_pred cEEEEeCCC----CceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCC------ceeEe---eCCCCee
Q 001295 482 TIKVWDATN----GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG------SRVDY---EAPGRWC 548 (1106)
Q Consensus 482 ~i~iwd~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~---~~~~~~v 548 (1106)
.|++||+.+ .+.+..+.+|...|.+++|+++. +.+|++++.||.|++||+.+.. ....+ ..+...+
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 168 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ-DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV 168 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS-TTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCC-CCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCe
Confidence 999999987 45788999999999999997652 4689999999999999998876 22222 3444555
Q ss_pred EEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCC----CCCcCeEEEccCC-C
Q 001295 549 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----LPASPRIRFNKDG-C 623 (1106)
Q Consensus 549 ~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~v~~v~~s~~~-~ 623 (1106)
.+++|+|++ +.++++++.|+.|++||+.+++.+..+..+.. ...+.+++|+|++ .
T Consensus 169 ~~~~~~~~~--------------------~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (416)
T 2pm9_A 169 ISLAWNQSL--------------------AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNST 228 (416)
T ss_dssp CEEEECSSC--------------------TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTT
T ss_pred eEEEeCCCC--------------------CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCC
Confidence 555555552 35799999999999999999999988876531 4579999999987 6
Q ss_pred EEEEEeCCC---cEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCc
Q 001295 624 LLAVSTNDN---GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV 700 (1106)
Q Consensus 624 ~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1106)
++++++.|+ .|++||+.++......
T Consensus 229 ~l~~~~~d~~~~~i~~~d~~~~~~~~~~---------------------------------------------------- 256 (416)
T 2pm9_A 229 RVATATGSDNDPSILIWDLRNANTPLQT---------------------------------------------------- 256 (416)
T ss_dssp EEEEEECCSSSCCCCEEETTSTTSCSBC----------------------------------------------------
T ss_pred EEEEEECCCCCceEEEEeCCCCCCCcEE----------------------------------------------------
Confidence 999999998 9999998664111000
Q ss_pred cccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCC
Q 001295 701 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS 780 (1106)
Q Consensus 701 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 780 (1106)
T Consensus 257 -------------------------------------------------------------------------------- 256 (416)
T 2pm9_A 257 -------------------------------------------------------------------------------- 256 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccCccccCCCCCCccccccCCCCCCCCeeEEEEec-CCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEE
Q 001295 781 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLA 858 (1106)
Q Consensus 781 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~ 858 (1106)
+. .+|...|.+++|+| ++++|++++ ||.|++||+.+++.+..+.+|...|.+++
T Consensus 257 -----------------------~~-~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~ 312 (416)
T 2pm9_A 257 -----------------------LN-QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTK 312 (416)
T ss_dssp -----------------------CC-SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEE
T ss_pred -----------------------ee-cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEE
Confidence 00 01667788888988 888899888 89999999999999999999999999999
Q ss_pred EecCCC-ceEEEeeCCCcEEEEEeecceEEEEec-----------------------------------CcccCeeEEEE
Q 001295 859 FHPQDN-NIIAIGMDDSSIQIYNVRVDEVKSKLK-----------------------------------GHSKRITGLAF 902 (1106)
Q Consensus 859 ~s~~d~-~~la~g~~dg~v~iwd~~~~~~~~~l~-----------------------------------~h~~~V~~l~~ 902 (1106)
|+| ++ .+|++++.||.|++||+.+++...... .|...+++++|
T Consensus 313 ~s~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (416)
T 2pm9_A 313 FAP-EAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHW 391 (416)
T ss_dssp ECT-TCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEE
T ss_pred ECC-CCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEE
Confidence 999 66 899999999999999998765332211 16778889999
Q ss_pred ecCCCEEEEEcCCCcEEEEeCCC
Q 001295 903 SHALNVLVSSGADSQLCVWSSDG 925 (1106)
Q Consensus 903 s~d~~~l~s~s~Dg~i~vwd~~~ 925 (1106)
+|||++|++++.|++|+||++.+
T Consensus 392 s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 392 AFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp ETTTEEECBCTTSSCBCCBCCCC
T ss_pred eeCCeEEEEeCCCCeEEEEEecc
Confidence 99999999999999999999986
No 33
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.1e-36 Score=340.32 Aligned_cols=289 Identities=14% Similarity=0.184 Sum_probs=248.6
Q ss_pred ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295 407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 486 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 486 (1106)
.+.+|.+.|++++|+||+++||+|+.|++|+|||..+++... .+..|...|.+++|+|++. ++++|+.|+.+++|
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVY 133 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEE
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEE
Confidence 368999999999999999999999999999999999887655 5667899999999999999 89999999999999
Q ss_pred eCCCC------ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeE
Q 001295 487 DATNG------AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT 560 (1106)
Q Consensus 487 d~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 560 (1106)
++... .....+.+|...|.+++|+++ +..|++++.|++|++||+++++....+..|...|.++.++++.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~--- 208 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNS--DMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE--- 208 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECSS--SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCS---
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCC---
Confidence 98643 346778899999999998754 4689999999999999999988888888888877777776532
Q ss_pred EEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEcc
Q 001295 561 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 640 (1106)
Q Consensus 561 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 640 (1106)
++++|++++.|+.|++||+++++++..+..| ...|.+++|+|++.+|++++.|++|++||++
T Consensus 209 ----------------~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h--~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~ 270 (354)
T 2pbi_B 209 ----------------TGNTFVSGGCDKKAMVWDMRSGQCVQAFETH--ESDVNSVRYYPSGDAFASGSDDATCRLYDLR 270 (354)
T ss_dssp ----------------SCCEEEEEETTSCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ----------------CCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CCCeEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 2457999999999999999999999998866 4479999999999999999999999999986
Q ss_pred CCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceee
Q 001295 641 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV 720 (1106)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v 720 (1106)
++. .+.
T Consensus 271 ~~~-~~~------------------------------------------------------------------------- 276 (354)
T 2pbi_B 271 ADR-EVA------------------------------------------------------------------------- 276 (354)
T ss_dssp TTE-EEE-------------------------------------------------------------------------
T ss_pred CCc-EEE-------------------------------------------------------------------------
Confidence 541 000
Q ss_pred EecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcc
Q 001295 721 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM 800 (1106)
Q Consensus 721 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 800 (1106)
++..
T Consensus 277 ------------------------------------------------~~~~---------------------------- 280 (354)
T 2pbi_B 277 ------------------------------------------------IYSK---------------------------- 280 (354)
T ss_dssp ------------------------------------------------EECC----------------------------
T ss_pred ------------------------------------------------EEcC----------------------------
Confidence 0000
Q ss_pred ccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEE
Q 001295 801 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 879 (1106)
Q Consensus 801 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iw 879 (1106)
..+...+.+++|+|++++|++|+ |++|++||+.+++.+..+.+|...|++++|+| ++++||+|+.||+|+||
T Consensus 281 ------~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~sp-dg~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 281 ------ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTLRVW 353 (354)
T ss_dssp ------TTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEE
T ss_pred ------CCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECC-CCCEEEEEcCCCCEEec
Confidence 00234577899999999999998 89999999999999999999999999999999 99999999999999999
Q ss_pred E
Q 001295 880 N 880 (1106)
Q Consensus 880 d 880 (1106)
+
T Consensus 354 ~ 354 (354)
T 2pbi_B 354 A 354 (354)
T ss_dssp C
T ss_pred C
Confidence 5
No 34
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.6e-37 Score=343.87 Aligned_cols=257 Identities=15% Similarity=0.180 Sum_probs=202.1
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCc-cccccccCCCCcCeEEEEEccCCCEE
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSM-PLQAALVKDPGVSVNRVIWSPDGSLF 427 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~h~~~V~~l~~spdg~~l 427 (1106)
|...|.+++|||||+ +|++++ |+++++||... ..|+...... .........|...|.+++|+||+ +|
T Consensus 29 ~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l 96 (344)
T 4gqb_B 29 MERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSL---------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GI 96 (344)
T ss_dssp CCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEE---------EEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EE
T ss_pred ccCCEEEEEECCCCC-EEEEEe-CCceEEeecee---------eeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eE
Confidence 667899999999999 577776 78899997321 1111100000 00011123456789999999985 68
Q ss_pred EEEeCCCeEEEEEccCCceeeee-eeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEE
Q 001295 428 GVAYSRHIVQIYSYHGGDEVRQH-LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 506 (1106)
Q Consensus 428 as~~~d~~v~iwd~~~~~~~~~~-~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 506 (1106)
++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|+|+ +|++|+.|++|++||+.+++++..+.+|...|.+
T Consensus 97 ~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~ 174 (344)
T 4gqb_B 97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTC 174 (344)
T ss_dssp EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEE
Confidence 89999999999999998765432 24568999999999999999 8999999999999999999999999999999999
Q ss_pred EeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeC--CCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEE
Q 001295 507 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 584 (1106)
Q Consensus 507 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 584 (1106)
++|+++.. .+|++++.|++|++||+++.+....+.. +...+.+++|+|++ ++++++|
T Consensus 175 ~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~--------------------~~~l~sg 233 (344)
T 4gqb_B 175 VAASPHKD-SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQ--------------------SEVFVFG 233 (344)
T ss_dssp EEECSSCT-TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSC--------------------TTEEEEE
T ss_pred EEecCCCC-CceeeeccccccccccccccceeeeeecceeeccceeeeecCCC--------------------CcceEEe
Confidence 99976653 5889999999999999998877665532 33345555555543 2468899
Q ss_pred ECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCC-CEEEEEeCCCcEEEEEccCC
Q 001295 585 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 585 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~ 642 (1106)
+.|+.|++||+++++++..+.+|. ..|++++|+|++ ++|++|+.|++|++||+.++
T Consensus 234 ~~dg~v~~wd~~~~~~~~~~~~h~--~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~ 290 (344)
T 4gqb_B 234 DENGTVSLVDTKSTSCVLSSAVHS--QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS 290 (344)
T ss_dssp ETTSEEEEEESCC--CCEEEECCS--SCEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred ccCCcEEEEECCCCcEEEEEcCCC--CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence 999999999999999999998774 479999999987 68999999999999998765
No 35
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.1e-36 Score=337.25 Aligned_cols=216 Identities=20% Similarity=0.304 Sum_probs=181.5
Q ss_pred ccCCCCcCeEEEEE-----cc-CCCEEEEEeCCCeEEEEEccCCce----eeeeeeeccccCCeeEEEEcCCCCceEEEE
Q 001295 407 LVKDPGVSVNRVIW-----SP-DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVIT 476 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~-----sp-dg~~las~~~d~~v~iwd~~~~~~----~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s 476 (1106)
.+.+|.+.|++++| ++ |+++||+|+.|++|+|||+.+++. ......+.+|...|.+++|+|++. ++++
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~s 93 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAIS 93 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEEE
Confidence 47899999999999 77 999999999999999999986532 123446889999999999999999 8999
Q ss_pred ecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEee---CCCCeeEEEEE
Q 001295 477 CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAY 553 (1106)
Q Consensus 477 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~ 553 (1106)
|+.|++|++||+++++.+..+.+|...|.+++|+++ +.+|++++.|+.|++||+.. ....... .+...+.+++|
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~--~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD--NRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSS--TTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEE
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCC--CCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeee
Confidence 999999999999999999999999999999998764 47999999999999999973 3332222 56677888888
Q ss_pred ecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCc
Q 001295 554 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG 633 (1106)
Q Consensus 554 s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 633 (1106)
+|++.. ...+.|.+.++++++.|+.|++||. .++....+..| ...|.+++|+|+|++|++|+.||.
T Consensus 171 ~~~~~~-----------~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h--~~~v~~~~~s~~g~~l~sgs~dg~ 236 (343)
T 2xzm_R 171 SPIMKS-----------ANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAH--ESNVNHLSISPNGKYIATGGKDKK 236 (343)
T ss_dssp CCCCCS-----------CSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECC--SSCEEEEEECTTSSEEEEEETTCE
T ss_pred cccccc-----------ccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCc--cccceEEEECCCCCEEEEEcCCCe
Confidence 887641 1123456678999999999999994 55666677666 457999999999999999999999
Q ss_pred EEEEEccC
Q 001295 634 IKILATSD 641 (1106)
Q Consensus 634 i~iwd~~~ 641 (1106)
|++||+.+
T Consensus 237 v~iwd~~~ 244 (343)
T 2xzm_R 237 LLIWDILN 244 (343)
T ss_dssp EEEEESSC
T ss_pred EEEEECCC
Confidence 99999743
No 36
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.2e-37 Score=353.27 Aligned_cols=263 Identities=13% Similarity=0.145 Sum_probs=228.2
Q ss_pred CCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEE
Q 001295 351 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 430 (1106)
Q Consensus 351 ~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 430 (1106)
+.+++++|+|+|++ |++|+.||.|++||+.+++... .+..| ..+....|+|++++||+|
T Consensus 57 ~~~~~~~~s~~g~~-l~~~~~d~~v~i~d~~~~~~~~-------------------~~~~~-~~~~~~~~~~~~~~l~~~ 115 (420)
T 3vl1_A 57 DAGKGNTFEKVGSH-LYKARLDGHDFLFNTIIRDGSK-------------------MLKRA-DYTAVDTAKLQMRRFILG 115 (420)
T ss_dssp BCCTTCEEEEEETT-EEEEEETTEEEEEECCSEETTT-------------------TSCSC-CEEEEEEECSSSCEEEEE
T ss_pred ccccceeeeecCCe-EEEEEcCCcEEEEEecccceee-------------------EEecC-CceEEEEEecCCCEEEEE
Confidence 44668999999996 8999999999999998876543 23445 455666889999999999
Q ss_pred eCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEecc
Q 001295 431 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 510 (1106)
Q Consensus 431 ~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 510 (1106)
+.|+.|++||+.+++... .+.+|.+.|.+++|+|+++ +|++|+.|++|++||+.+++.+..+.+|...|.+++|+
T Consensus 116 ~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 116 TTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190 (420)
T ss_dssp ETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred ECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence 999999999999887654 5679999999999999999 89999999999999999999999999999999999997
Q ss_pred ccCCceEEEEEecCCeEEEEeCCCCCceeEeeC---CCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECC
Q 001295 511 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA---PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 587 (1106)
Q Consensus 511 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 587 (1106)
++ +.+|++++.||.|++||+++.+....+.. +...+.++++.+++...........+..++|+|+++++++++.|
T Consensus 191 ~~--~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 268 (420)
T 3vl1_A 191 DR--GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVS 268 (420)
T ss_dssp TT--TTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETT
T ss_pred CC--CCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCC
Confidence 64 47999999999999999999888777764 56789999999887755555556688889999999999999999
Q ss_pred CeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCC-EEEEEeCCCcEEEEEccCC
Q 001295 588 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 588 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~~ 642 (1106)
|.|++||+.+++.+..+.. .+...|.+++|+|++. +|++|+.||.|++||+.++
T Consensus 269 g~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 323 (420)
T 3vl1_A 269 GVITVHNVFSKEQTIQLPS-KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSP 323 (420)
T ss_dssp SCEEEEETTTCCEEEEECC-TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred CeEEEEECCCCceeEEccc-ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999999988777753 2345799999999999 9999999999999999876
No 37
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=339.51 Aligned_cols=301 Identities=16% Similarity=0.194 Sum_probs=238.7
Q ss_pred cccc-ceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEe
Q 001295 741 LRAT-KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 819 (1106)
Q Consensus 741 ~~~~-~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s 819 (1106)
+|.. .|..++|+|+|++|++++.|+.|++|++...... ....... +|...|.+++|+
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~--------------------~~~~~~~--~h~~~v~~~~~s 70 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI--------------------CKSVLSE--GHQRTVRKVAWS 70 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE--------------------EEEEECS--SCSSCEEEEEEC
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce--------------------eeeeecc--ccCCcEEEEEEC
Confidence 3666 8999999999999999999999999997632110 0000112 389999999999
Q ss_pred cCCCEEEEEe-CCeEEEEEcCCC--ceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecc---eEEEEecCc
Q 001295 820 KNDSYVMSAS-GGKISLFNMMTF--KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKSKLKGH 893 (1106)
Q Consensus 820 ~~~~~l~~~s-dg~i~vwd~~~~--~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~---~~~~~l~~h 893 (1106)
|++++|++++ |++|++|++.++ +++..+.+|...|.+++|+| ++++|++|+.|+.|++||+.++ +++..+.+|
T Consensus 71 p~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h 149 (345)
T 3fm0_A 71 PCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH 149 (345)
T ss_dssp TTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC
T ss_pred CCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc
Confidence 9999999999 999999998866 45778999999999999999 8999999999999999999875 456788999
Q ss_pred ccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEec
Q 001295 894 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFET 972 (1106)
Q Consensus 894 ~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~ 972 (1106)
...|.+++|+|++.+|++++.|++|++|++.+++. .+.....+|. ..|.+++|+|+|++|++ +.|+.|++||.
T Consensus 150 ~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~---~~~~~~~~h~---~~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW---VCCATLEGHE---STVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp CSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE---EEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE---EEEEEecCCC---CceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 99999999999999999999999999999887532 2233445555 48999999999999999 58999999996
Q ss_pred CCc---------------eEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEe--eCCCcccCCCC
Q 001295 973 TKL---------------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCR--INPSAYLPAGV 1035 (1106)
Q Consensus 973 ~~~---------------~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~--~~~~~~~~~~~ 1035 (1106)
... +++..+. ..|...|++++|+|++.+|++++.|+.|++|+...+..... +........+|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h 302 (345)
T 3fm0_A 224 YLPGNEQGVACSGSDPSWKCICTLS-GFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH 302 (345)
T ss_dssp ECTTCTTCCCCC---CEEEEEEEEC-SSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSS
T ss_pred ccCCCCccceeeccCCccceeEEec-CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccc
Confidence 321 2333332 24889999999999999999999999999999876532100 00001112234
Q ss_pred CCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCCC
Q 001295 1036 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1074 (1106)
Q Consensus 1036 ~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~~ 1074 (1106)
...|. +++|+|+++.+|++|+.||+|++|++.+.+.
T Consensus 303 -~~~V~--~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 303 -SQDVN--CVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp -SSCEE--EEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred -cCcEe--EeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 33366 8999996556999999999999999999874
No 38
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.8e-36 Score=336.33 Aligned_cols=324 Identities=15% Similarity=0.173 Sum_probs=265.9
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 428 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 428 (1106)
|.+.|.+++|||||+. ++++..++.+.+|+......... ..+|...|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~~-~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQM-QPVPFPPDALIGPGIPRHARQIN-------------------TLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSCE-EECCCCTTSSSSTTCCSEEEEEE-------------------EECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCCE-EEeecCCCcEeccccCCccccce-------------------eccCCCceEEEEEecCCcEEE
Confidence 5678999999999995 77777677776776554333221 357999999999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeeeec--cccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCc--eeEEEeccCCCe
Q 001295 429 VAYSRHIVQIYSYHGGDEVRQHLEID--AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA--KQYIFEGHEAPV 504 (1106)
Q Consensus 429 s~~~d~~v~iwd~~~~~~~~~~~~l~--~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~h~~~v 504 (1106)
+++ ||.|++||+.+++.......+. +|...|.+++|+|+++ ++++++.|+.|++||+.+++ ....+.+|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 998 9999999999877555444444 7999999999999999 89999999999999999887 667888999999
Q ss_pred EEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEE
Q 001295 505 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 584 (1106)
Q Consensus 505 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 584 (1106)
.+++|++ ++.++++++.||.|++||+++.+....+..+...+.+++|+|+++ +++++
T Consensus 145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------------~l~~~ 201 (337)
T 1gxr_A 145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT---------------------KLWTG 201 (337)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS---------------------EEEEE
T ss_pred EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCC---------------------EEEEE
Confidence 9999866 457999999999999999998777777776766666666666554 79999
Q ss_pred ECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCC
Q 001295 585 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 664 (1106)
Q Consensus 585 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1106)
+.|+.|++||+.+++.+..+... ..+.+++|+|+++++++++.++.|++||+.++. ..
T Consensus 202 ~~dg~i~~~d~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~-~~------------------ 259 (337)
T 1gxr_A 202 GLDNTVRSWDLREGRQLQQHDFT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-KY------------------ 259 (337)
T ss_dssp ETTSEEEEEETTTTEEEEEEECS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSC-EE------------------
T ss_pred ecCCcEEEEECCCCceEeeecCC---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCC-eE------------------
Confidence 99999999999999988887533 358999999999999999999999999976541 00
Q ss_pred CCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCcccccc
Q 001295 665 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 744 (1106)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 744 (1106)
T Consensus 260 -------------------------------------------------------------------------------- 259 (337)
T 1gxr_A 260 -------------------------------------------------------------------------------- 259 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCE
Q 001295 745 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 824 (1106)
Q Consensus 745 ~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ 824 (1106)
. + ..|...|.+++|+|++++
T Consensus 260 -----------------------~-----------------------------------~--~~~~~~v~~~~~~~~~~~ 279 (337)
T 1gxr_A 260 -----------------------Q-----------------------------------L--HLHESCVLSLKFAYCGKW 279 (337)
T ss_dssp -----------------------E-----------------------------------E--CCCSSCEEEEEECTTSSE
T ss_pred -----------------------E-----------------------------------E--cCCccceeEEEECCCCCE
Confidence 0 0 015666788888888888
Q ss_pred EEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEee
Q 001295 825 VMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 882 (1106)
Q Consensus 825 l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~ 882 (1106)
|++++ ||.|++||+.+++.+... .|...|.+++|+| ++++|++++.||.|++|++.
T Consensus 280 l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 280 FVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISV-DDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECT-TSCEEEEEETTSCEEEEEEE
T ss_pred EEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECC-CCCEEEEecCCCeEEEEEEe
Confidence 88887 788888888887776544 3778899999999 89999999999999999973
No 39
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.3e-35 Score=326.68 Aligned_cols=248 Identities=18% Similarity=0.277 Sum_probs=213.2
Q ss_pred ccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCE
Q 001295 347 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 426 (1106)
Q Consensus 347 ~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 426 (1106)
.+|.+.|++++|+|+|++ |++|+.||.|+|||+.+++... .+.+|...|.+++|+|++++
T Consensus 20 ~gh~~~v~~~~~s~~~~~-l~s~~~dg~i~iw~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~ 79 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEK-------------------TISGHKLGISDVAWSSDSNL 79 (312)
T ss_dssp CCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECTTSSE
T ss_pred cccCCcEEEEEECCCCCE-EEEeeCCCeEEEEeCCCcccch-------------------hhccCCCceEEEEEcCCCCE
Confidence 459999999999999995 9999999999999999887665 36889999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEE
Q 001295 427 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 506 (1106)
Q Consensus 427 las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 506 (1106)
|++++.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ ++++|+.|+.|++||+++++.+..+..|...|.+
T Consensus 80 l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~ 154 (312)
T 4ery_A 80 LVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 154 (312)
T ss_dssp EEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred EEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEE
Confidence 9999999999999999987665 6789999999999999999 8999999999999999999999999999999999
Q ss_pred EeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeC-CCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEE
Q 001295 507 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 585 (1106)
Q Consensus 507 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 585 (1106)
++|++ ++.+|++++.||.|++||+++......+.. +.. .+..++|+|+++++++++
T Consensus 155 ~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~l~~~~ 211 (312)
T 4ery_A 155 VHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---------------------PVSFVKFSPNGKYILAAT 211 (312)
T ss_dssp EEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCC---------------------CEEEEEECTTSSEEEEEE
T ss_pred EEEcC--CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCC---------------------ceEEEEECCCCCEEEEEc
Confidence 99865 457999999999999999988765554322 222 344455566666899999
Q ss_pred CCCeEEEEECCCcceeEEEccCCCCCCcCeEEEc-cCCCEEEEEeCCCcEEEEEccCC
Q 001295 586 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 586 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
.|+.|++||+.+++.+..+..+..........++ +++.+|++|+.||.|++||+.++
T Consensus 212 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 212 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp TTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC
T ss_pred CCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc
Confidence 9999999999999999998877553333344444 58899999999999999998776
No 40
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=7e-36 Score=339.58 Aligned_cols=303 Identities=18% Similarity=0.301 Sum_probs=228.2
Q ss_pred CCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeecccc------------------CCeeEEEEcCCCCc
Q 001295 410 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV------------------GGVNDIAFSHPNKQ 471 (1106)
Q Consensus 410 ~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~------------------~~V~~~~~s~d~~~ 471 (1106)
+|...|.+++|||||++||+|+ +++++||++.+++.+. .+.+|. ..|.+++|+|+++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~- 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK- 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEECTTSS-
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence 6899999999999999999986 6889999999988665 333332 2499999999999
Q ss_pred eEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEE
Q 001295 472 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM 551 (1106)
Q Consensus 472 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 551 (1106)
+|++|+.|++|+|||+.+++.+..+.+|...|.+++|+++ +.+|++++.|++|++||+++
T Consensus 137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~--~~~l~s~s~d~~v~iwd~~~----------------- 196 (393)
T 1erj_A 137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS--GDKLVSGSGDRTVRIWDLRT----------------- 196 (393)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT--SSEEEEEETTSEEEEEETTT-----------------
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCC--CCEEEEecCCCcEEEEECCC-----------------
Confidence 8999999999999999999999999999999988887654 35677777777777776653
Q ss_pred EEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEcc-CCCEEEEEeC
Q 001295 552 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN 630 (1106)
Q Consensus 552 ~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~ 630 (1106)
++....+..+ ..+.+++|+| ++++|++|+.
T Consensus 197 ----------------------------------------------~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~s~ 227 (393)
T 1erj_A 197 ----------------------------------------------GQCSLTLSIE---DGVTTVAVSPGDGKYIAAGSL 227 (393)
T ss_dssp ----------------------------------------------TEEEEEEECS---SCEEEEEECSTTCCEEEEEET
T ss_pred ----------------------------------------------CeeEEEEEcC---CCcEEEEEECCCCCEEEEEcC
Confidence 3222233222 2477899999 8999999999
Q ss_pred CCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccc
Q 001295 631 DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRI 710 (1106)
Q Consensus 631 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 710 (1106)
||.|++||+.++ ..+..+....
T Consensus 228 d~~v~iwd~~~~-~~~~~~~~~~--------------------------------------------------------- 249 (393)
T 1erj_A 228 DRAVRVWDSETG-FLVERLDSEN--------------------------------------------------------- 249 (393)
T ss_dssp TSCEEEEETTTC-CEEEEEC------------------------------------------------------------
T ss_pred CCcEEEEECCCC-cEEEeecccc---------------------------------------------------------
Confidence 999999998776 2211110000
Q ss_pred cccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCcc
Q 001295 711 TEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQ 790 (1106)
Q Consensus 711 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 790 (1106)
....+|...|.+++|+|+++.|++++.|+.|++||+.....
T Consensus 250 --------------------------~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~------------- 290 (393)
T 1erj_A 250 --------------------------ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN------------- 290 (393)
T ss_dssp -----------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------------
T ss_pred --------------------------cCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCC-------------
Confidence 00012566677777777777777777777777776542000
Q ss_pred ccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEe
Q 001295 791 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG 870 (1106)
Q Consensus 791 ~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g 870 (1106)
..... ....+.+...+.+|...|.+++|+| ++.+|++|
T Consensus 291 ----------------------~~~~~-------------------~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sg 328 (393)
T 1erj_A 291 ----------------------KSDSK-------------------TPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSG 328 (393)
T ss_dssp ---------------------------------------------------CEEEEEECCSSCEEEEEECG-GGCEEEEE
T ss_pred ----------------------ccccc-------------------CCCCCcceEEEecccCcEEEEEECC-CCCEEEEE
Confidence 00000 0012344556778999999999999 89999999
Q ss_pred eCCCcEEEEEeecceEEEEecCcccCeeEEEEec------CCCEEEEEcCCCcEEEEeCCC
Q 001295 871 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH------ALNVLVSSGADSQLCVWSSDG 925 (1106)
Q Consensus 871 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~------d~~~l~s~s~Dg~i~vwd~~~ 925 (1106)
+.||.|++||+.+++.+..+.+|...|.+++|++ ++.+||+|+.||+|+||++..
T Consensus 329 s~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 329 SKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 9999999999999999999999999999999986 688999999999999999865
No 41
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-38 Score=362.36 Aligned_cols=366 Identities=14% Similarity=0.184 Sum_probs=269.8
Q ss_pred CCCCcEEEEEecCCCeEEEEE----------eccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEE
Q 001295 349 QGSSPMSMDFHPVQQTLLLVG----------TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 418 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg----------~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 418 (1106)
+...|.+++|||+|+.++++| +.|+.|+|||+.+++.... + ....|...|.++
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~--~---------------~~~~~~~~v~~~ 73 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP--I---------------ASLQVDSKFNDL 73 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC--S---------------CCCCCSSCEEEE
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE--E---------------EEEecCCceEEE
Confidence 446799999999998679999 8899999999998763210 0 124688999999
Q ss_pred EEccCCCEEEEEeCCCeEEEEEccCCce-eeeeeeeccccCCeeEEEEcCC-CCceEEEEecCCCcEEEEeCCCCc----
Q 001295 419 IWSPDGSLFGVAYSRHIVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHP-NKQLCVITCGDDKTIKVWDATNGA---- 492 (1106)
Q Consensus 419 ~~spdg~~las~~~d~~v~iwd~~~~~~-~~~~~~l~~h~~~V~~~~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~---- 492 (1106)
+|+|++++|++++.||.|++||+.+... ......+.+|...|.+++|+|+ +. +|++++.|+.|++||+.+++
T Consensus 74 ~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~ 151 (416)
T 2pm9_A 74 DWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESPS 151 (416)
T ss_dssp EECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCTT
T ss_pred EECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCccccc
Confidence 9999999999999999999999987211 1133367899999999999999 66 79999999999999999886
Q ss_pred --eeE---EEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCC------CCeeEEEEEecCCCeEE
Q 001295 493 --KQY---IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP------GRWCTTMAYSADGTRTY 561 (1106)
Q Consensus 493 --~~~---~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~~~ 561 (1106)
... .+.+|...|.+++|+++. +.+|++++.||.|++||+++.+....+..+ ...+.+++|+|++.
T Consensus 152 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--- 227 (416)
T 2pm9_A 152 NYTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNS--- 227 (416)
T ss_dssp TCCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCT---
T ss_pred cccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCC---
Confidence 333 346799999999997652 368999999999999999987776666655 44555555555542
Q ss_pred EeeeccceeEEEEcCCCCEEEEEECCC---eEEEEECCCc-ceeEEEc-cCCCCCCcCeEEEcc-CCCEEEEEeCCCcEE
Q 001295 562 QGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSV-QLLTSID-ADGGLPASPRIRFNK-DGCLLAVSTNDNGIK 635 (1106)
Q Consensus 562 ~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~-~~~~~~~-~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~ 635 (1106)
.++++++.|+ .|++||++++ +.+..+. .| ...|.+++|+| ++++|++++.||.|+
T Consensus 228 -----------------~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~l~s~~~dg~v~ 288 (416)
T 2pm9_A 228 -----------------TRVATATGSDNDPSILIWDLRNANTPLQTLNQGH--QKGILSLDWCHQDEHLLLSSGRDNTVL 288 (416)
T ss_dssp -----------------TEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCC--SSCEEEEEECSSCSSCEEEEESSSEEE
T ss_pred -----------------CEEEEEECCCCCceEEEEeCCCCCCCcEEeecCc--cCceeEEEeCCCCCCeEEEEeCCCCEE
Confidence 4788999998 9999999986 5566665 44 45799999999 999999999999999
Q ss_pred EEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCC
Q 001295 636 ILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN 715 (1106)
Q Consensus 636 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 715 (1106)
+||+.++ +.+..+.
T Consensus 289 ~wd~~~~-~~~~~~~----------------------------------------------------------------- 302 (416)
T 2pm9_A 289 LWNPESA-EQLSQFP----------------------------------------------------------------- 302 (416)
T ss_dssp EECSSSC-CEEEEEE-----------------------------------------------------------------
T ss_pred EeeCCCC-ccceeec-----------------------------------------------------------------
Confidence 9998776 2222111
Q ss_pred CceeeEecCCCCCCccceecccCccccccceEEEEEcCCC-ceEEEeecCceEEEeeccccccCCCCccccccCccccCC
Q 001295 716 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSG-NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQP 794 (1106)
Q Consensus 716 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~ 794 (1106)
.|...|.+++|+|++ ..+++++.|+.|++|++.....
T Consensus 303 -------------------------~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~----------------- 340 (416)
T 2pm9_A 303 -------------------------ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN----------------- 340 (416)
T ss_dssp -------------------------CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC-----------------
T ss_pred -------------------------CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC-----------------
Confidence 266778899999999 8999999999999999763110
Q ss_pred CCCCccccccCCCCCCC-----CeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEE
Q 001295 795 PSGIMMTNDVTDSNPEE-----AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI 869 (1106)
Q Consensus 795 ~~~~~~~~~~~~~~~~~-----~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~ 869 (1106)
.. . ... ......+.+.+..++.+.. +. .... .....|...+.+++|+| ++++||+
T Consensus 341 -----~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~-~~~~~~~~~~~~~~~s~-dg~~la~ 400 (416)
T 2pm9_A 341 -----TL----D--EQETETKQQESETDFWNNVSREESKEK--PS-----VFHL-QAPTWYGEPSPAAHWAF-GGKLVQI 400 (416)
T ss_dssp -----SS----C--C----------------------CCSC--CC-----SSCC-CCCSTTCCCSCCCEEET-TTEEECB
T ss_pred -----Cc----c--cccccccccCCcccccccccccccccc--cc-----cccc-cCCccccCCccceEEee-CCeEEEE
Confidence 00 0 110 0011112222222221110 10 0111 22334677888999999 9999999
Q ss_pred eeCCCcEEEEEeecc
Q 001295 870 GMDDSSIQIYNVRVD 884 (1106)
Q Consensus 870 g~~dg~v~iwd~~~~ 884 (1106)
|+.||.|+||++.+.
T Consensus 401 ~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 401 TPDGKGVSITNPKIS 415 (416)
T ss_dssp CTTSSCBCCBCCCCC
T ss_pred eCCCCeEEEEEeccC
Confidence 999999999998764
No 42
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.4e-35 Score=326.24 Aligned_cols=291 Identities=22% Similarity=0.408 Sum_probs=249.5
Q ss_pred eeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEE
Q 001295 450 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 529 (1106)
Q Consensus 450 ~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 529 (1106)
..++.+|...|.+++|+|+++ +|++|+.|+.|++||+.+++....+.+|...|.+++|++ ++++|++++.|+.|++
T Consensus 16 ~~~~~gh~~~v~~~~~s~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 16 KFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS--DSNLLVSASDDKTLKI 91 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEE
T ss_pred EEEEcccCCcEEEEEECCCCC--EEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcC--CCCEEEEECCCCEEEE
Confidence 346889999999999999999 899999999999999999999999999999999999876 4579999999999999
Q ss_pred EeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCC
Q 001295 530 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 609 (1106)
Q Consensus 530 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 609 (1106)
||+++.+....+..|...|.+++|+|+++ ++++++.|+.|++||+.+++.+..+..+.
T Consensus 92 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~---------------------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~- 149 (312)
T 4ery_A 92 WDVSSGKCLKTLKGHSNYVFCCNFNPQSN---------------------LIVSGSFDESVRIWDVKTGKCLKTLPAHS- 149 (312)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSS---------------------EEEEEETTSCEEEEETTTCCEEEEECCCS-
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEcCCCC---------------------EEEEEeCCCcEEEEECCCCEEEEEecCCC-
Confidence 99998887777777777666666666554 79999999999999999999998887664
Q ss_pred CCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccccccccc
Q 001295 610 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS 689 (1106)
Q Consensus 610 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1106)
..|.+++|+|++++|++++.||.|++||+.++. .+..+
T Consensus 150 -~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~---------------------------------------- 187 (312)
T 4ery_A 150 -DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-CLKTL---------------------------------------- 187 (312)
T ss_dssp -SCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEEE----------------------------------------
T ss_pred -CcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeeEE----------------------------------------
Confidence 479999999999999999999999999986551 00000
Q ss_pred ccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEE
Q 001295 690 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 769 (1106)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 769 (1106)
T Consensus 188 -------------------------------------------------------------------------------- 187 (312)
T 4ery_A 188 -------------------------------------------------------------------------------- 187 (312)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeec
Q 001295 770 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM 848 (1106)
Q Consensus 770 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~ 848 (1106)
. ..+...+.+++|+|++++|++++ ||.|++||+.+++.+..+.
T Consensus 188 ----------------------------------~--~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 231 (312)
T 4ery_A 188 ----------------------------------I--DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 231 (312)
T ss_dssp ----------------------------------C--CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC
T ss_pred ----------------------------------e--ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE
Confidence 0 01445677888999999999888 8999999999998888888
Q ss_pred CCCCCee--EEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEc--CCCcEEEEeCC
Q 001295 849 PPPPAAT--FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG--ADSQLCVWSSD 924 (1106)
Q Consensus 849 ~~~~~v~--~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s--~Dg~i~vwd~~ 924 (1106)
+|...+. ...+++.++.+|++|+.||.|++||+.+++++..+.+|.+.|.+++|+|++.+|++++ .|++|++|+.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 232 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 8876543 3355544889999999999999999999999999999999999999999999999987 69999999864
No 43
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-37 Score=359.13 Aligned_cols=235 Identities=10% Similarity=0.048 Sum_probs=171.8
Q ss_pred CcceeeeccCCCCcEEEEEecCC---------CeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCC
Q 001295 340 PKTVTRTLNQGSSPMSMDFHPVQ---------QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 410 (1106)
Q Consensus 340 ~~~~~~~~~h~~~v~~~~~sp~g---------~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 410 (1106)
..+...++.+...|++|+|+|++ + +||+|+.++..
T Consensus 123 ~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~----------------------------------- 166 (524)
T 2j04_B 123 GKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMD----------------------------------- 166 (524)
T ss_dssp CCSCEEEEECCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC--------------------------------------
T ss_pred CCcceEEEECCCceeEEEecccCCCCccCcCCe-EEEEEEecccC-----------------------------------
Confidence 34455666789999999999997 5 58888755310
Q ss_pred CCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceee-eeeeeccccCCeeEEEEcCC------CCceEEEEecCCCcE
Q 001295 411 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR-QHLEIDAHVGGVNDIAFSHP------NKQLCVITCGDDKTI 483 (1106)
Q Consensus 411 h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~-~~~~l~~h~~~V~~~~~s~d------~~~~~l~s~~~d~~i 483 (1106)
-..+|++++||+++.|++|+|||+.+++... ....+.+|.+.|.+++|+|+ +. +|++++.||+|
T Consensus 167 -------~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~--~LAs~s~Dgtv 237 (524)
T 2j04_B 167 -------EPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG--CLSFVSQEGTI 237 (524)
T ss_dssp ----------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSC--EEEEEETTSCE
T ss_pred -------CccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCc--eEEEEecCCeE
Confidence 0136899999999999999999998876432 12346678899999999997 45 89999999999
Q ss_pred EEEeCCCCce-----------eEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCc-eeEeeCCCCeeEEE
Q 001295 484 KVWDATNGAK-----------QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTM 551 (1106)
Q Consensus 484 ~iwd~~~~~~-----------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~ 551 (1106)
+|||+.++.. ...+.+|...|++++|++. ..|++|+.||+|++||+++... ...+..|...|.++
T Consensus 238 rlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~---~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv 314 (524)
T 2j04_B 238 NFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP---TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSV 314 (524)
T ss_dssp EEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS---SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEE
T ss_pred EEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC---CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEE
Confidence 9999987642 3578899999999999753 4799999999999999987543 34567777777766
Q ss_pred --EEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEe
Q 001295 552 --AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST 629 (1106)
Q Consensus 552 --~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 629 (1106)
+|++++. .+|++++.|++|++||+++++.+..+.++.....|.+++|+|+++.+++++
T Consensus 315 ~~~~s~~g~--------------------~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~ 374 (524)
T 2j04_B 315 STAYSDFED--------------------TVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSD 374 (524)
T ss_dssp EEECCTTSC--------------------CEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEEC
T ss_pred EEEcCCCCC--------------------eEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeC
Confidence 3444441 479999999999999999988777766554323478999999999999999
Q ss_pred CCCcEEEEEccCC
Q 001295 630 NDNGIKILATSDG 642 (1106)
Q Consensus 630 ~dg~i~iwd~~~~ 642 (1106)
.|++|++||++++
T Consensus 375 ~d~tv~lwd~~~~ 387 (524)
T 2j04_B 375 GASSLRAVPSRAA 387 (524)
T ss_dssp SSSEEEEEETTCT
T ss_pred CCCcEEEEECccc
Confidence 9999999998765
No 44
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=9.9e-35 Score=372.59 Aligned_cols=526 Identities=11% Similarity=0.058 Sum_probs=371.5
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 428 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 428 (1106)
+...+.+.+||| ++ ||..+. +.|.+|++.+++... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~--~~-iaf~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DR-IIFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEET--TE-EEEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeC--CE-EEEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 456789999996 44 555554 789999998876543 578999999999999999999
Q ss_pred EEeCC------CeEEEEEccCCceeeeeeeeccccCCe-------eEEEEcCCCCceEEEEecCC------CcEEEEeCC
Q 001295 429 VAYSR------HIVQIYSYHGGDEVRQHLEIDAHVGGV-------NDIAFSHPNKQLCVITCGDD------KTIKVWDAT 489 (1106)
Q Consensus 429 s~~~d------~~v~iwd~~~~~~~~~~~~l~~h~~~V-------~~~~~s~d~~~~~l~s~~~d------~~i~iwd~~ 489 (1106)
+++.+ ..|++||+.+++.. .+..|...+ ..++|+|||+ ++++++.+ ..|++||+.
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~~----~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEIK----RITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEEE----ECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCeE----EcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88643 47999999987632 477888888 9999999998 67777754 468888887
Q ss_pred CCceeEEEeccCCCeEEEeccccCCceEEEEEecC------------CeEEEEeCCCCCceeEeeCCCCeeEEEEEecCC
Q 001295 490 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------------GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 557 (1106)
Q Consensus 490 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 557 (1106)
+++.. .+..+. ...++|++ | ++++++.+ ...++|..........+..+...+.++.|+++
T Consensus 143 ~g~~~-~l~~~~--~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d- 214 (1045)
T 1k32_A 143 GINFV-PLNLGP--ATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH- 214 (1045)
T ss_dssp GTEEE-ECCSCS--CSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-
T ss_pred CCCeE-EecCCC--cceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-
Confidence 77653 333332 33556654 5 78887532 34555543332333344455555555555544
Q ss_pred CeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCC-cceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEE
Q 001295 558 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 636 (1106)
Q Consensus 558 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 636 (1106)
..+++++.++.+.+|.+.. +.....+..+. .+...+|+|||++|+.+. ++.|++
T Consensus 215 ---------------------~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~---~~~~~~~SpDG~~la~~~-~~~i~~ 269 (1045)
T 1k32_A 215 ---------------------RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT---DYYPRHLNTDGRRILFSK-GGSIYI 269 (1045)
T ss_dssp ---------------------EEEEEECTTSSCEEEEEETTSCSCEECCCCC---SSCEEEEEESSSCEEEEE-TTEEEE
T ss_pred ---------------------EEEEEEeccCceEEEEEeCCCCcceEecCCC---CcceeeEcCCCCEEEEEe-CCEEEE
Confidence 2456677788888997653 44445554443 367789999999998885 789999
Q ss_pred EEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCC
Q 001295 637 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 716 (1106)
Q Consensus 637 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 716 (1106)
|+.... . +..+..+...
T Consensus 270 ~d~~~~-~-l~~l~~~~~~------------------------------------------------------------- 286 (1045)
T 1k32_A 270 FNPDTE-K-IEKIEIGDLE------------------------------------------------------------- 286 (1045)
T ss_dssp ECTTTC-C-EEECCCCCCC-------------------------------------------------------------
T ss_pred ecCCce-E-eeeeccCccc-------------------------------------------------------------
Confidence 987322 1 1111110000
Q ss_pred ceeeEecCCCCCCccceecccCccccccceEEEEEc-CCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCC
Q 001295 717 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT-NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 795 (1106)
Q Consensus 717 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~ 795 (1106)
..... ..+...+..++|+ |+|+.+++++ ++.+.+|++.
T Consensus 287 -------------~~~~~-----~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~---------------------- 325 (1045)
T 1k32_A 287 -------------SPEDR-----IISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVS---------------------- 325 (1045)
T ss_dssp -------------BCCSE-----EEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTT----------------------
T ss_pred -------------ccccc-----cccccccceeeecCCCCCEEEEEE-cCEEEEEcCC----------------------
Confidence 00000 1145678899999 9999888887 7788888754
Q ss_pred CCCccccccCCCCCCC-CeeEEEEecCCCEEEEEe-CCeEE-EEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeC
Q 001295 796 SGIMMTNDVTDSNPEE-AVPCFALSKNDSYVMSAS-GGKIS-LFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD 872 (1106)
Q Consensus 796 ~~~~~~~~~~~~~~~~-~v~~l~~s~~~~~l~~~s-dg~i~-vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~ 872 (1106)
++.... +. .+.. .+..++|+ ||+.|++++ ++.+. +|++.+++... +.+|...+..++||| |+++||+++.
T Consensus 326 ~~~~~~--~~--~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~Sp-DG~~la~~~~ 398 (1045)
T 1k32_A 326 GTYVLK--VP--EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDR-NGKFAVVAND 398 (1045)
T ss_dssp SSBEEE--CS--CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECT-TSSEEEEEET
T ss_pred CCceEE--cc--CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECC-CCCEEEEECC
Confidence 222221 11 1555 78999999 999999988 57788 89998776543 447888899999999 9999999999
Q ss_pred CCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCC----------cEEEEeCCCcccccceeecccCCCCC
Q 001295 873 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS----------QLCVWSSDGWEKQKNRFLQIPTGRTP 942 (1106)
Q Consensus 873 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg----------~i~vwd~~~~~~~~~~~~~~~~~~~~ 942 (1106)
++.|++||+.+++....+.+|...|.+++|||||++|++++.++ .|++||+.+++. .....+.
T Consensus 399 ~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~------~~l~~~~- 471 (1045)
T 1k32_A 399 RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI------FAATTEN- 471 (1045)
T ss_dssp TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE------EECSCSS-
T ss_pred CCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE------EEeeCCC-
Confidence 99999999999998888888999999999999999999887654 899999988541 1122222
Q ss_pred CCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCceE-----------------------------------------eee
Q 001295 943 TAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLEC-----------------------------------------VKQ 980 (1106)
Q Consensus 943 ~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~~-----------------------------------------~~~ 980 (1106)
..+..++|+|||++|+. +.++...+|+...... .+.
T Consensus 472 --~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~ 549 (1045)
T 1k32_A 472 --SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRS 549 (1045)
T ss_dssp --SBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGC
T ss_pred --cccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHce
Confidence 25678999999999988 4555555665432211 000
Q ss_pred cccCCCCCCeeEEEECCCCCEEEE-------------EEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEE
Q 001295 981 WVPRESSAPITHATFSCDSQLVYA-------------CFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAA 1047 (1106)
Q Consensus 981 ~~~~~h~~~v~~l~~s~d~~~l~t-------------~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1047 (1106)
.....|...+..++++|||+++++ ...+..|++||+.+++..... .+ +. .++|
T Consensus 550 ~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-------~~-----v~--~~~~ 615 (1045)
T 1k32_A 550 SPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK-------NN-----LT--DLRL 615 (1045)
T ss_dssp EECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE-------EE-----EE--EEEE
T ss_pred EEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee-------cC-----cc--eEEE
Confidence 111245678999999999988875 123557899999988754222 11 33 7899
Q ss_pred eCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295 1048 HPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus 1048 ~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
+| ||+.|++++.| .|++||+.+++
T Consensus 616 S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 616 SA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp CT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred CC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 99 79999998866 89999998876
No 45
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.9e-36 Score=346.55 Aligned_cols=346 Identities=12% Similarity=0.109 Sum_probs=277.3
Q ss_pred cCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCc
Q 001295 413 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA 492 (1106)
Q Consensus 413 ~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 492 (1106)
..+++++|+|+|++|++++.|+.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++||+.+++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence 345689999999999999999999999999876544 34455 4455667899999 89999999999999999999
Q ss_pred eeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEE
Q 001295 493 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 572 (1106)
Q Consensus 493 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~ 572 (1106)
....+.+|...|.+++|+++ +.+|++++.|+.|++||+++.+....+..|...|.+++|+|+++
T Consensus 131 ~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-------------- 194 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFPS--GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGR-------------- 194 (420)
T ss_dssp EEEETTSSSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTT--------------
T ss_pred eeeecccccCccEEEEECCC--CCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCC--------------
Confidence 99888999999999999764 47999999999999999999888888888888777777777665
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCC-CCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcc
Q 001295 573 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG-GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 651 (1106)
Q Consensus 573 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 651 (1106)
+|++++.|+.|++||+.+++.+..+..+. +...+.+++|.+++... ..
T Consensus 195 -------~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------------------~~---- 243 (420)
T 3vl1_A 195 -------NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ--------------------LH---- 243 (420)
T ss_dssp -------EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS--------------------CG----
T ss_pred -------EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce--------------------ee----
Confidence 79999999999999999999998887542 33456666665432110 00
Q ss_pred cccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCcc
Q 001295 652 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 731 (1106)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~ 731 (1106)
T Consensus 244 -------------------------------------------------------------------------------- 243 (420)
T 3vl1_A 244 -------------------------------------------------------------------------------- 243 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCC
Q 001295 732 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE 811 (1106)
Q Consensus 732 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 811 (1106)
..+...+.+++|+|+++++++++.||.|++||+.. +........ .|..
T Consensus 244 --------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~----------------------~~~~~~~~~--~~~~ 291 (420)
T 3vl1_A 244 --------EISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFS----------------------KEQTIQLPS--KFTC 291 (420)
T ss_dssp --------GGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTT----------------------CCEEEEECC--TTSS
T ss_pred --------ecccCcccceEEcCCCCEEEEEcCCCeEEEEECCC----------------------CceeEEccc--ccCC
Confidence 01334566778899999999999999999998753 222221122 2788
Q ss_pred CeeEEEEecCCC-EEEEEe-CCeEEEEEcCCCce-eeeecC-CCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecc---
Q 001295 812 AVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKT-MATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD--- 884 (1106)
Q Consensus 812 ~v~~l~~s~~~~-~l~~~s-dg~i~vwd~~~~~~-~~~~~~-~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~--- 884 (1106)
.|.+++|+|+++ +|++++ ||.|++||+.+++. +..+.. |...|.++.+ + ++++|++++.||.|++|++...
T Consensus 292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~l~s~~~d~~v~iw~~~~~~~~ 369 (420)
T 3vl1_A 292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-A-AGALFVSSGFDTSIKLDIISDPESE 369 (420)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-E-TTEEEEEETTTEEEEEEEECCTTCC
T ss_pred CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-C-CCCEEEEecCCccEEEEeccCCCCC
Confidence 999999999999 999998 89999999998754 666666 5667777755 5 6789999999999999998763
Q ss_pred ------eEEEEecCcccCeeEEEEecCCC---EEEEEcCCCcEEEEeCCC
Q 001295 885 ------EVKSKLKGHSKRITGLAFSHALN---VLVSSGADSQLCVWSSDG 925 (1106)
Q Consensus 885 ------~~~~~l~~h~~~V~~l~~s~d~~---~l~s~s~Dg~i~vwd~~~ 925 (1106)
.....+.+|.+.|.+++|+|++. .|++++.+|.+.+|+++.
T Consensus 370 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 370 RPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp SCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred ccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 22234667999999999999999 788888899999999875
No 46
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.8e-35 Score=336.13 Aligned_cols=275 Identities=14% Similarity=0.221 Sum_probs=206.4
Q ss_pred ceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEc
Q 001295 342 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 421 (1106)
Q Consensus 342 ~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 421 (1106)
.+...+.|.+.|+|++|||||++ ||+|+ +++++||++.+++.+.......-... ............+...|.+++|+
T Consensus 56 ~~~~~~~h~~~V~~v~fspdg~~-la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~v~~v~~s 132 (393)
T 1erj_A 56 ELHKSLDHTSVVCCVKFSNDGEY-LATGC-NKTTQVYRVSDGSLVARLSDDSAANK-DPENLNTSSSPSSDLYIRSVCFS 132 (393)
T ss_dssp EEEEEEECSSCCCEEEECTTSSE-EEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEEC
T ss_pred eeEEecCCCCEEEEEEECCCCCE-EEEEc-CCcEEEEEecCCCEEEEecCcccccc-ccccccccccCCCceeEEEEEEC
Confidence 34556679999999999999995 88876 78999999999887653211000000 00000011112344569999999
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccC
Q 001295 422 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 501 (1106)
Q Consensus 422 pdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 501 (1106)
|||++||+|+.|++|+|||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||++++++...+. +.
T Consensus 133 ~dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~ 206 (393)
T 1erj_A 133 PDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IE 206 (393)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CS
T ss_pred CCCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cC
Confidence 999999999999999999999987655 6889999999999999999 89999999999999999999888886 56
Q ss_pred CCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEE
Q 001295 502 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 581 (1106)
Q Consensus 502 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l 581 (1106)
..+.+++|++. ++.+|++|+.||.|++||++++.....+..... .. ..+...+.+++|+|++.+|
T Consensus 207 ~~v~~~~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~-------------~~-~~h~~~v~~v~~~~~g~~l 271 (393)
T 1erj_A 207 DGVTTVAVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENE-------------SG-TGHKDSVYSVVFTRDGQSV 271 (393)
T ss_dssp SCEEEEEECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC--------------------CCCSSCEEEEEECTTSSEE
T ss_pred CCcEEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeeccccc-------------CC-CCCCCCEEEEEECCCCCEE
Confidence 78999998752 557999999999999999988765554421100 00 0112245555566666689
Q ss_pred EEEECCCeEEEEECCCc------------ceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 582 LAAGDDFSIKFWDMDSV------------QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 582 ~~~~~d~~i~iwd~~~~------------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
++++.|+.|++||+.+. .+...+.+| ...|.+++|+|++.+|++|+.|+.|++||..++
T Consensus 272 ~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~ 342 (393)
T 1erj_A 272 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 342 (393)
T ss_dssp EEEETTSEEEEEEC---------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred EEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 99999999999999763 234455544 457999999999999999999999999998776
No 47
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=7.2e-36 Score=333.04 Aligned_cols=320 Identities=13% Similarity=0.154 Sum_probs=259.6
Q ss_pred CCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC
Q 001295 411 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 490 (1106)
Q Consensus 411 h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 490 (1106)
|.+.|.+++|||||++++++..++.+.+|+....... . ...+|...|.+++|+|+++ ++++++ |+.|++||+.+
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~h~~~v~~~~~~~~~~--~l~~~~-dg~i~iw~~~~ 81 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQ--I-NTLNHGEVVCAVTISNPTR--HVYTGG-KGCVKVWDISH 81 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEE--E-EEECCSSCCCEEEECSSSS--EEEEEC-BSEEEEEETTS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCcccc--c-eeccCCCceEEEEEecCCc--EEEEcC-CCeEEEEECCC
Confidence 4568999999999999999887777777655443222 2 3447999999999999999 788888 99999999987
Q ss_pred Cce---eEEEe--ccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCC--ceeEeeCCCCeeEEEEEecCCCeEEEe
Q 001295 491 GAK---QYIFE--GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG--SRVDYEAPGRWCTTMAYSADGTRTYQG 563 (1106)
Q Consensus 491 ~~~---~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~~~~~ 563 (1106)
+.. +..+. +|...|.+++|++ ++++|++++.||.|++||+.+.. ....+..+...+.+++|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-------- 151 (337)
T 1gxr_A 82 PGNKSPVSQLDCLNRDNYIRSCKLLP--DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-------- 151 (337)
T ss_dssp TTCCSCSEEEECSCTTSBEEEEEECT--TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT--------
T ss_pred CCceeeeecccccCCCCcEEEEEEcC--CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECC--------
Confidence 653 34444 7999999999876 45799999999999999998766 2334444555555555554
Q ss_pred eeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCc
Q 001295 564 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 643 (1106)
Q Consensus 564 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 643 (1106)
+++++++++.|+.|++||+.+++.+..+..+ ...+.+++|+|++++|++++.||.|++||+.++.
T Consensus 152 -------------~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 216 (337)
T 1gxr_A 152 -------------DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH--TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR 216 (337)
T ss_dssp -------------TSSEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred -------------CCCEEEEEeCCCcEEEEeCCCCceeeeeecc--cCceEEEEECCCCCEEEEEecCCcEEEEECCCCc
Confidence 4558999999999999999999999888765 4479999999999999999999999999986551
Q ss_pred hhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEec
Q 001295 644 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 723 (1106)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~ 723 (1106)
....
T Consensus 217 -~~~~--------------------------------------------------------------------------- 220 (337)
T 1gxr_A 217 -QLQQ--------------------------------------------------------------------------- 220 (337)
T ss_dssp -EEEE---------------------------------------------------------------------------
T ss_pred -eEee---------------------------------------------------------------------------
Confidence 0000
Q ss_pred CCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccc
Q 001295 724 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 803 (1106)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 803 (1106)
.
T Consensus 221 ----------------------------------------------~--------------------------------- 221 (337)
T 1gxr_A 221 ----------------------------------------------H--------------------------------- 221 (337)
T ss_dssp ----------------------------------------------E---------------------------------
T ss_pred ----------------------------------------------e---------------------------------
Confidence 0
Q ss_pred cCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEee
Q 001295 804 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 882 (1106)
Q Consensus 804 ~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~ 882 (1106)
.+...+.+++|+|+++++++++ ++.|++||+.+++. ..+..|...|.+++|+| ++++|++++.||.|++||+.
T Consensus 222 ----~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 222 ----DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp ----ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred ----cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECC-CCCEEEEecCCCcEEEEECC
Confidence 0344577788888888888887 78888898887665 45677899999999999 89999999999999999999
Q ss_pred cceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeC
Q 001295 883 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 923 (1106)
Q Consensus 883 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~ 923 (1106)
+++.+... .|...|++++|+|++++|++++.||.|++|++
T Consensus 296 ~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 296 YGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 98877544 58899999999999999999999999999996
No 48
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=9.1e-35 Score=323.96 Aligned_cols=254 Identities=19% Similarity=0.296 Sum_probs=200.3
Q ss_pred eeec-cCCCCcEEEEE-----ec-CCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeE
Q 001295 344 TRTL-NQGSSPMSMDF-----HP-VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN 416 (1106)
Q Consensus 344 ~~~~-~h~~~v~~~~~-----sp-~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~ 416 (1106)
...+ +|.+.|++++| ++ +++ +|++|+.|++|+|||+.+++.... .......+.+|...|.
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~------------~~~~~~~l~~h~~~V~ 80 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGY------------FGIPHKALTGHNHFVS 80 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSB------------SEEEEEEECCCSSCEE
T ss_pred eeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCcccc------------cccccchhccCCCceE
Confidence 3344 49999999999 77 888 599999999999999976542110 0001124789999999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEE
Q 001295 417 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 496 (1106)
Q Consensus 417 ~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 496 (1106)
+++|+|++.+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||+.. .....
T Consensus 81 ~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~-~~~~~ 154 (343)
T 2xzm_R 81 DLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILG-ECKFS 154 (343)
T ss_dssp EEEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSS-CEEEE
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccC-Cceee
Confidence 99999999999999999999999999987665 6789999999999999999 899999999999999874 33444
Q ss_pred Ee---ccCCCeEEEeccccCC--------ceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeee
Q 001295 497 FE---GHEAPVYSVCPHHKEN--------IQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 565 (1106)
Q Consensus 497 ~~---~h~~~v~~~~~~~~~~--------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~ 565 (1106)
.. +|...|.+++|++... +.+|++++.||.|++||.. ......+..|...|.+++|+|++
T Consensus 155 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s~~g-------- 225 (343)
T 2xzm_R 155 SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNG-------- 225 (343)
T ss_dssp CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEECTTS--------
T ss_pred eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEECCCC--------
Confidence 33 7899999999876542 2689999999999999943 33444555666656655555555
Q ss_pred ccceeEEEEcCCCCEEEEEECCCeEEEEECC-CcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 566 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD-SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 566 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
++|++++.|+.|++||+. .......+.. . ..|.+++|+|++.+++++ .|+.|++|++.++
T Consensus 226 -------------~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~--~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 226 -------------KYIATGGKDKKLLIWDILNLTYPQREFDA-G--STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQ 286 (343)
T ss_dssp -------------SEEEEEETTCEEEEEESSCCSSCSEEEEC-S--SCEEEEEECSSSCEEEEE-ESSCEEEEESSSC
T ss_pred -------------CEEEEEcCCCeEEEEECCCCcccceeecC-C--CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCC
Confidence 489999999999999994 4445555432 2 359999999999988765 4778999998765
No 49
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-35 Score=325.38 Aligned_cols=253 Identities=17% Similarity=0.231 Sum_probs=196.4
Q ss_pred ccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCE
Q 001295 347 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 426 (1106)
Q Consensus 347 ~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 426 (1106)
.+|.+.|++++|+|+ +||+|+.|++|+|||+.++.......+ ...+|...|.+++|+|++++
T Consensus 11 ~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~---------------~~~~h~~~v~~v~~sp~~~~ 72 (330)
T 2hes_X 11 KLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVL---------------DETAHKKAIRSVAWRPHTSL 72 (330)
T ss_dssp ECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEE---------------CTTCCCSCEEEEEECTTSSE
T ss_pred ccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEE---------------ecCCccCCEEEEEECCCCCE
Confidence 349999999999998 599999999999999987532111100 02349999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCc----eeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC----CceeEEEe
Q 001295 427 FGVAYSRHIVQIYSYHGGD----EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN----GAKQYIFE 498 (1106)
Q Consensus 427 las~~~d~~v~iwd~~~~~----~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~ 498 (1106)
||+|+.|++|+|||+.... .......+.+|...|.+++|+|+++ +|++|+.|++|++||+.. .+++..+.
T Consensus 73 las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~~~~~~~~~ 150 (330)
T 2hes_X 73 LAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEEYECISVLQ 150 (330)
T ss_dssp EEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCCCEEEEEEC
T ss_pred EEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCCeEEEEEec
Confidence 9999999999999996432 1233446889999999999999999 899999999999999943 25678899
Q ss_pred ccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCC--CceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcC
Q 001295 499 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 576 (1106)
Q Consensus 499 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~ 576 (1106)
+|...|.+++|+++ +.+|++++.|++|++||.... .....+..|...|.+++|+|++.
T Consensus 151 ~h~~~v~~v~~~p~--~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~------------------ 210 (330)
T 2hes_X 151 EHSQDVKHVIWHPS--EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG------------------ 210 (330)
T ss_dssp CCSSCEEEEEECSS--SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSS------------------
T ss_pred cCCCceEEEEECCC--CCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCC------------------
Confidence 99999999999765 479999999999999998765 34556667777777777766621
Q ss_pred CCCEEEEEECCCeEEEEECCCc--------ceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 577 TKNRFLAAGDDFSIKFWDMDSV--------QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 577 ~~~~l~~~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
+.++++++.|++|++||+.++ .....+.. .+...|.+++|++++ +|++++.||.|++|+..++
T Consensus 211 -~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 211 -VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD-VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp -SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS-CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred -eeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc-ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 336899999999999998764 23333332 135579999999765 8999999999999998654
No 50
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-36 Score=352.48 Aligned_cols=373 Identities=11% Similarity=0.141 Sum_probs=268.3
Q ss_pred EEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc-CCCEEEEEeCCCe
Q 001295 357 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGVAYSRHI 435 (1106)
Q Consensus 357 ~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las~~~d~~ 435 (1106)
.|+|+++. +++++ .|+. +++.+.. +..+|.+.|++++|+| ++++||+|+.||+
T Consensus 34 ~f~~~~~~-~~~~~------~w~~-~g~~~~~------------------~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~ 87 (437)
T 3gre_A 34 EFGPIQEI-VRSPN------MGNL-RGKLIAT------------------LMENEPNSITSSAVSPGETPYLITGSDQGV 87 (437)
T ss_dssp GGCCCCCC-CCCCC------GGGC-CCCEEEE------------------ECTTTTSCEEEEEEECSSSCEEEEEETTSE
T ss_pred hcCCcccc-ccccc------cccc-cceEEee------------------eccCCCCceEEEEECCCCCCEEEEecCCce
Confidence 37888885 65544 4774 3555443 2388999999999999 9999999999999
Q ss_pred EEEEEccC---CceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCC---CCceeEEEec----------
Q 001295 436 VQIYSYHG---GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT---NGAKQYIFEG---------- 499 (1106)
Q Consensus 436 v~iwd~~~---~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~~---------- 499 (1106)
|+|||+.+ +........+ +|...|.+++|+|+++ +|++|+.|++|++||+. +++.+..+.+
T Consensus 88 v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~ 164 (437)
T 3gre_A 88 IKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKN 164 (437)
T ss_dssp EEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGG
T ss_pred EEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccC
Confidence 99999987 5433323233 5999999999999999 89999999999999995 6666555443
Q ss_pred --cCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeC--CCCeeEEEEEecCCCeEEEeeeccceeEEEEc
Q 001295 500 --HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 575 (1106)
Q Consensus 500 --h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~ 575 (1106)
+...+.++.+...+++.+|++++.||.|++||+++.+....+.. |...|.+++|+|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~------------------ 226 (437)
T 3gre_A 165 FGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEEC------------------ 226 (437)
T ss_dssp GSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTS------------------
T ss_pred cccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCC------------------
Confidence 34455555554556779999999999999999998887777766 55556666555554
Q ss_pred CCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEc----cCCCEEEEEeCCCcEEEEEccCCchhhhhhcc
Q 001295 576 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN----KDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 651 (1106)
Q Consensus 576 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 651 (1106)
++|++++.||.|++||+++++.+..+.... ...|.+++|+ +++.+|++|+.||.|++||+.++ +....+.+
T Consensus 227 ---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~ 301 (437)
T 3gre_A 227 ---CVLILGTTRGIIDIWDIRFNVLIRSWSFGD-HAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG-HCQYAFIN 301 (437)
T ss_dssp ---CEEEEEETTSCEEEEETTTTEEEEEEBCTT-CEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT-EEEEEEES
T ss_pred ---CEEEEEcCCCeEEEEEcCCccEEEEEecCC-CCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC-cEEEEEEc
Confidence 489999999999999999999998886322 3368899555 56889999999999999999887 44444433
Q ss_pred cccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCcc
Q 001295 652 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 731 (1106)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~ 731 (1106)
|.
T Consensus 302 ~~------------------------------------------------------------------------------ 303 (437)
T 3gre_A 302 SD------------------------------------------------------------------------------ 303 (437)
T ss_dssp SS------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 22
Q ss_pred ceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCC
Q 001295 732 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE 811 (1106)
Q Consensus 732 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 811 (1106)
..+..+.|+|+++.+ .+.. +.+..|..
T Consensus 304 ------------~~~~~~~~~~~~~~l----~~~~-------------------------------------~~~~~~~~ 330 (437)
T 3gre_A 304 ------------EQPSMEHFLPIEKGL----EELN-------------------------------------FCGIRSLN 330 (437)
T ss_dssp ------------SCCCGGGGSCBCSSG----GGCC-------------------------------------CCCCCSGG
T ss_pred ------------CCCccceeccccccc----ccce-------------------------------------ecccccCC
Confidence 222222333433322 0000 11112778
Q ss_pred CeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCC---CeeEEEEecCCCceEEEeeCCCcEEEEEeecceEE
Q 001295 812 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP---AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 887 (1106)
Q Consensus 812 ~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~---~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~ 887 (1106)
.|++++|+ ++++|++++ ||.|++||+.+++....+.+|.. .+....+++ ...+++.. |+...+...
T Consensus 331 ~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~ 400 (437)
T 3gre_A 331 ALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSV 400 (437)
T ss_dssp GGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC-------
T ss_pred ceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeec-ceEEEEEe--------ccccccccc
Confidence 89999999 788999998 99999999999999988887643 455566666 44444433 333344555
Q ss_pred EEecCcccCeeEEEEecC--CCEEEEEcCCCcEEEEe
Q 001295 888 SKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWS 922 (1106)
Q Consensus 888 ~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~i~vwd 922 (1106)
..+..|.+.|++++|+++ +.+|++|+.||.|+||+
T Consensus 401 ~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 401 DDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred CcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 666789999999999998 78999999999999995
No 51
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.1e-34 Score=336.72 Aligned_cols=317 Identities=20% Similarity=0.327 Sum_probs=269.4
Q ss_pred ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295 407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 486 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 486 (1106)
.+.+|.+.|.. +++++|++|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+ +. ++++|+.|++|++|
T Consensus 113 ~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vw 184 (445)
T 2ovr_B 113 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVW 184 (445)
T ss_dssp EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEE
T ss_pred EecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEE
Confidence 36789887643 355679999999999999999999988665 678999999999997 44 79999999999999
Q ss_pred eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeec
Q 001295 487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 566 (1106)
Q Consensus 487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 566 (1106)
|+.+++.+..+.+|...|.++.++ + ..+++|+.||.|++||+.+.+....+..+...+.++++ ++
T Consensus 185 d~~~~~~~~~~~~h~~~v~~~~~~--~--~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~--------- 249 (445)
T 2ovr_B 185 NAETGECIHTLYGHTSTVRCMHLH--E--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG--------- 249 (445)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEE--T--TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS---------
T ss_pred ECCcCcEEEEECCCCCcEEEEEec--C--CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC---------
Confidence 999999999999999999999974 2 57999999999999999998888888888777777766 33
Q ss_pred cceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhh
Q 001295 567 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 646 (1106)
Q Consensus 567 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 646 (1106)
+++++++.||.|++||+.+++.+..+..+ ...|.+++| ++.++++++.||.|++||+.++. .+
T Consensus 250 ------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~-~~ 312 (445)
T 2ovr_B 250 ------------RRVVSGAYDFMVKVWDPETETCLHTLQGH--TNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGN-CI 312 (445)
T ss_dssp ------------SCEEEEETTSCEEEEEGGGTEEEEEECCC--SSCEEEEEE--CSSEEEEEETTSCEEEEETTTCC-EE
T ss_pred ------------CEEEEEcCCCEEEEEECCCCcEeEEecCC--CCceEEEEE--CCCEEEEEeCCCeEEEEECCCCC-EE
Confidence 36999999999999999999999998866 447888888 88999999999999999987651 11
Q ss_pred hhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCC
Q 001295 647 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 726 (1106)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 726 (1106)
..+.
T Consensus 313 ~~~~---------------------------------------------------------------------------- 316 (445)
T 2ovr_B 313 HTLT---------------------------------------------------------------------------- 316 (445)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred EEEc----------------------------------------------------------------------------
Confidence 0000
Q ss_pred CCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCC
Q 001295 727 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 806 (1106)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 806 (1106)
T Consensus 317 -------------------------------------------------------------------------------- 316 (445)
T 2ovr_B 317 -------------------------------------------------------------------------------- 316 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecC---CCCCeeEEEEecCCCceEEEeeCCCcEEEEEee
Q 001295 807 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP---PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 882 (1106)
Q Consensus 807 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~---~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~ 882 (1106)
+|...+.++.+ +++++++++ ||.|++||+.+++.+..+.. |...|++++|+ +.+|++|+.||.|++||+.
T Consensus 317 -~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 317 -GHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp -CCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETT
T ss_pred -CCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC---CCEEEEEeCCCeEEEEECC
Confidence 14445555555 466888888 89999999999998888876 78889999995 4699999999999999999
Q ss_pred cceEEEEe-----cCcccCeeEEEEecCCCEEEEEcCCCc----EEEEeCCC
Q 001295 883 VDEVKSKL-----KGHSKRITGLAFSHALNVLVSSGADSQ----LCVWSSDG 925 (1106)
Q Consensus 883 ~~~~~~~l-----~~h~~~V~~l~~s~d~~~l~s~s~Dg~----i~vwd~~~ 925 (1106)
+++.+..+ .+|.+.|++++|+|++.+|++++.||+ |.|||++.
T Consensus 391 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 391 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp TCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 99998888 578899999999999999999999998 99999976
No 52
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-35 Score=324.32 Aligned_cols=291 Identities=13% Similarity=0.165 Sum_probs=225.3
Q ss_pred ccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEec
Q 001295 741 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 820 (1106)
Q Consensus 741 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 820 (1106)
+|...|.+++|+++ +|++++.|+.|++|++..... .... .+....|...|.+++|+|
T Consensus 12 ~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~--------------------~~~~-~~~~~~h~~~v~~v~~sp 68 (330)
T 2hes_X 12 LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF--------------------TLID-VLDETAHKKAIRSVAWRP 68 (330)
T ss_dssp CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC--------------------EEEE-EECTTCCCSCEEEEEECT
T ss_pred cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe--------------------EEEE-EEecCCccCCEEEEEECC
Confidence 58899999999998 899999999999999763210 0111 011113889999999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCC-------CceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec----ceEEE
Q 001295 821 NDSYVMSAS-GGKISLFNMMT-------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV----DEVKS 888 (1106)
Q Consensus 821 ~~~~l~~~s-dg~i~vwd~~~-------~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~----~~~~~ 888 (1106)
++++|++++ |++|++||+.. .+.+..+.+|...|.+++|+| ++++||+|+.|++|++||+.. .+++.
T Consensus 69 ~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~ 147 (330)
T 2hes_X 69 HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECIS 147 (330)
T ss_dssp TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEE
T ss_pred CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEE
Confidence 999999999 99999999853 345677889999999999999 899999999999999999943 36778
Q ss_pred EecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCC--CcEEEE-EeCC
Q 001295 889 KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLV-VHET 965 (1106)
Q Consensus 889 ~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d--g~~l~~-~~d~ 965 (1106)
.+.+|...|++++|+|++.+|++++.|++|++||+.++. ..++....+|.. .|.+++|+|+ +.+|++ +.|+
T Consensus 148 ~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~---~~~~~~~~~h~~---~v~~~~~~~~~~~~~l~s~s~D~ 221 (330)
T 2hes_X 148 VLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD---WECVAVLNGHEG---TVWSSDFDKTEGVFRLCSGSDDS 221 (330)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE---EEEEEEECCCSS---CEEEEEECCSSSSCEEEEEETTS
T ss_pred EeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC---eeEEEEccCCCC---cEEEEEecCCCCeeEEEEEeCCC
Confidence 899999999999999999999999999999999987642 124455566653 7899999999 778888 5899
Q ss_pred eEEEEecCCc--------eEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCcee--EEeeCCCcccCCCC
Q 001295 966 QLAIFETTKL--------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL--RCRINPSAYLPAGV 1035 (1106)
Q Consensus 966 ~v~i~d~~~~--------~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~--~~~~~~~~~~~~~~ 1035 (1106)
.|++||+.++ .+...+. ..|...|++++|++++ +|++++.||+|+|||..+++. ..... .+|
T Consensus 222 ~v~iw~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~------~~h 293 (330)
T 2hes_X 222 TVRVWKYMGDDEDDQQEWVCEAILP-DVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA------LCH 293 (330)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEECC-SCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEES------CTT
T ss_pred eEEEEEecCCCccccceeEEeeecc-cccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc------ccc
Confidence 9999999765 3333333 2489999999999765 899999999999999988743 22221 233
Q ss_pred CCCCccceEEEEeCC-CCCEEEEEeCCCcEEEEeecC
Q 001295 1036 SSSNVHPLVIAAHPQ-EPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus 1036 ~~~~v~~~~~~~~~~-d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
....+. .++|+|. ++++|++|+.||+|++|++.+
T Consensus 294 ~~~~v~--~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 294 GVYEIN--VVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTSCEE--EEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ccceEE--EEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 332466 7899985 578999999999999999865
No 53
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.1e-34 Score=338.94 Aligned_cols=341 Identities=17% Similarity=0.297 Sum_probs=265.4
Q ss_pred ccCCCCcCe-EEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEE
Q 001295 407 LVKDPGVSV-NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 485 (1106)
Q Consensus 407 ~~~~h~~~V-~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~i 485 (1106)
.+.+|...| .++.+ ++++|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|++++ ++++|+.||+|++
T Consensus 116 ~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~v 187 (464)
T 3v7d_B 116 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV 187 (464)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECSTT---EEEEEETTSCEEE
T ss_pred EEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE---EEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEE
Confidence 367888875 55555 67899999999999999999988665 678999999999999887 5999999999999
Q ss_pred EeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCe-EEEee
Q 001295 486 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR-TYQGF 564 (1106)
Q Consensus 486 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~~~~~ 564 (1106)
||+.+++++..+.+|...|.+++|.+.+++.++++|+.||.|++||+.+............ ...+.+.+++.. .....
T Consensus 188 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 266 (464)
T 3v7d_B 188 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-YPLVFHTPEENPYFVGVL 266 (464)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC-SSEEESCGGGCTTEEEEE
T ss_pred EECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC-cceEeeccCCCeEEEEEc
Confidence 9999999999999999999999998878889999999999999999987665433222211 112222332221 11112
Q ss_pred eccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCch
Q 001295 565 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 644 (1106)
Q Consensus 565 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 644 (1106)
........+++++++++++++.|+.|++||+.+++.+..+..+ ...|.+++|+|+++++++|+.||.|++||+.++ +
T Consensus 267 ~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~ 343 (464)
T 3v7d_B 267 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH--TDRIYSTIYDHERKRCISASMDTTIRIWDLENG-E 343 (464)
T ss_dssp CCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEEETTTTEEEEEETTSCEEEEETTTT-E
T ss_pred cCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-c
Confidence 2222334445788889999999999999999999999998766 457999999999999999999999999998765 1
Q ss_pred hhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecC
Q 001295 645 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 724 (1106)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 724 (1106)
.+..+
T Consensus 344 ~~~~~--------------------------------------------------------------------------- 348 (464)
T 3v7d_B 344 LMYTL--------------------------------------------------------------------------- 348 (464)
T ss_dssp EEEEE---------------------------------------------------------------------------
T ss_pred EEEEE---------------------------------------------------------------------------
Confidence 11100
Q ss_pred CCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccccc
Q 001295 725 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 804 (1106)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 804 (1106)
T Consensus 349 -------------------------------------------------------------------------------- 348 (464)
T 3v7d_B 349 -------------------------------------------------------------------------------- 348 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec
Q 001295 805 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 883 (1106)
Q Consensus 805 ~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~ 883 (1106)
.+|...|.+++++ +++|++++ ||.|++||+.++....... +...+..++|++ ++++|++|+ ||.|++||+.+
T Consensus 349 --~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~-dg~i~iwd~~~ 421 (464)
T 3v7d_B 349 --QGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYV-SDNILVSGS-ENQFNIYNLRS 421 (464)
T ss_dssp --CCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEE-CSSEEEEEE-TTEEEEEETTT
T ss_pred --eCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEe-CCCEEEEec-CCeEEEEECCC
Confidence 0156667777775 46777777 7888888888776655554 566788899999 899999998 89999999999
Q ss_pred ceEEEE-ecCcccCeeEEEEecCCCEEEEEcCCCcEEEEe
Q 001295 884 DEVKSK-LKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922 (1106)
Q Consensus 884 ~~~~~~-l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd 922 (1106)
++++.. +.+|...|++++|+ +..++++++.||.+.+|-
T Consensus 422 g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 422 GKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp CCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred CcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 999886 67899999999997 445566666777665553
No 54
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=9.6e-35 Score=324.37 Aligned_cols=308 Identities=19% Similarity=0.265 Sum_probs=248.8
Q ss_pred ceeeecc-CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEE
Q 001295 342 TVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 420 (1106)
Q Consensus 342 ~~~~~~~-h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 420 (1106)
.+..+|. |++.|++|+|+|++..+||||+.||+|+|||+.+++...... ...+.+|...|.+++|
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~--------------~~~l~~h~~~V~~~~~ 94 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIP--------------QRALRGHSHFVSDVVI 94 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEE--------------EEEECCCSSCEEEEEE
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccccee--------------eEEEeCCCCCEEEEEE
Confidence 3444555 999999999999854379999999999999998765432111 1147899999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCcee-EEEec
Q 001295 421 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-YIFEG 499 (1106)
Q Consensus 421 spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~ 499 (1106)
+|||++|++++.|+.|++|+...+.... ....+...+..+.+++++. +|++++.|+.+++||+...... ..+.+
T Consensus 95 s~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~ 169 (340)
T 4aow_A 95 SSDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDES 169 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSS
T ss_pred CCCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEecc
Confidence 9999999999999999999999876554 4567888999999999999 7999999999999998766543 45678
Q ss_pred cCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCC
Q 001295 500 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 579 (1106)
Q Consensus 500 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~ 579 (1106)
|...+..++|++.....++++++.|+.|++||+++......+..|...|.+++|+|+++
T Consensus 170 ~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~--------------------- 228 (340)
T 4aow_A 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS--------------------- 228 (340)
T ss_dssp CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS---------------------
T ss_pred ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCC---------------------
Confidence 99999999998887778899999999999999998888777777777777777766665
Q ss_pred EEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccC
Q 001295 580 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT 659 (1106)
Q Consensus 580 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 659 (1106)
+|++++.|+.|++||+.+++.+..+..+. .+.+++|+|++.+++ ++.|+.|++||+.++ ..+..+..+..
T Consensus 229 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~-~~~d~~i~iwd~~~~-~~~~~~~~~~~----- 298 (340)
T 4aow_A 229 LCASGGKDGQAMLWDLNEGKHLYTLDGGD---IINALCFSPNRYWLC-AATGPSIKIWDLEGK-IIVDELKQEVI----- 298 (340)
T ss_dssp EEEEEETTCEEEEEETTTTEEEEEEECSS---CEEEEEECSSSSEEE-EEETTEEEEEETTTT-EEEEEECCC-------
T ss_pred EEEEEeCCCeEEEEEeccCceeeeecCCc---eEEeeecCCCCceee-ccCCCEEEEEECCCC-eEEEeccccce-----
Confidence 79999999999999999999998887653 589999999887655 556899999998766 22222211000
Q ss_pred CCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCc
Q 001295 660 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 739 (1106)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 739 (1106)
....
T Consensus 299 ----------------------------------------------------------------------------~~~~ 302 (340)
T 4aow_A 299 ----------------------------------------------------------------------------STSS 302 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------------------------------------------eeec
Confidence 0000
Q ss_pred cccccceEEEEEcCCCceEEEeecCceEEEeecccc
Q 001295 740 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRT 775 (1106)
Q Consensus 740 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 775 (1106)
.+|...|.+++|+|++++|++++.||.|+||++.++
T Consensus 303 ~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 303 KAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred cCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 237789999999999999999999999999998753
No 55
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.1e-34 Score=321.53 Aligned_cols=211 Identities=19% Similarity=0.291 Sum_probs=179.6
Q ss_pred ccCCCCcCeEEEEEccC-CCEEEEEeCCCeEEEEEccCCcee--eeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcE
Q 001295 407 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDEV--RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 483 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~spd-g~~las~~~d~~v~iwd~~~~~~~--~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i 483 (1106)
+|.||.+.|++|+|+|+ +++||||+.|++|+|||+.+++.. .....+.+|...|.+++|+|+++ +|++++.|+.|
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i 110 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTL 110 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEEEcccccc
Confidence 47899999999999997 689999999999999999876532 23456889999999999999999 89999999999
Q ss_pred EEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCcee-EeeCCCCeeEEEEEecCCCeEEE
Q 001295 484 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQ 562 (1106)
Q Consensus 484 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~~~ 562 (1106)
++|+...+........+...+..+.+.+. +.+|++++.|+.+++||+....... ....+...+..++|++++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~---- 184 (340)
T 4aow_A 111 RLWDLTTGTTTRRFVGHTKDVLSVAFSSD--NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS---- 184 (340)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECTT--SSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS----
T ss_pred eEEeecccceeeeecCCCCceeEEEEeec--CccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC----
Confidence 99999999999888888888988887544 4789999999999999987644332 3345566677777766553
Q ss_pred eeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 563 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 563 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
..++++++.|+.|++||+.+++.+..+..| ...|.+++|+|++++|++|+.||.|++||+.+.
T Consensus 185 ---------------~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~ 247 (340)
T 4aow_A 185 ---------------NPIIVSCGWDKLVKVWNLANCKLKTNHIGH--TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG 247 (340)
T ss_dssp ---------------SCEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred ---------------CcEEEEEcCCCEEEEEECCCCceeeEecCC--CCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence 235788999999999999999999998876 457999999999999999999999999998655
No 56
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=7.7e-34 Score=364.33 Aligned_cols=493 Identities=13% Similarity=0.064 Sum_probs=355.7
Q ss_pred cceeeeccCCCCcEEEEEecCCCeEEEEEecc------CcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcC
Q 001295 341 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNV------GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVS 414 (1106)
Q Consensus 341 ~~~~~~~~h~~~v~~~~~sp~g~~llatg~~d------g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~ 414 (1106)
.....+..|...|.+++|||||++ ||+++.+ ..|.+||+.+++.. .+..|...
T Consensus 43 g~~~~lt~~~~~v~~~~~SPDG~~-la~~s~~~~~~~~~~i~~~d~~~g~~~--------------------~lt~~~~~ 101 (1045)
T 1k32_A 43 GSTRKIVSNLGVINNARFFPDGRK-IAIRVMRGSSLNTADLYFYNGENGEIK--------------------RITYFSGK 101 (1045)
T ss_dssp CCEEEEECSSSEEEEEEECTTSSE-EEEEEEESTTCCEEEEEEEETTTTEEE--------------------ECCCCCEE
T ss_pred CcEEEeeeCCCcccCeEECCCCCE-EEEEEeeccCCCCCeEEEEECCCCCeE--------------------EcccCCCc
Confidence 345556679999999999999997 6655432 47999999887643 26778888
Q ss_pred e-------EEEEEccCCCEEEEEeCC------CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecC--
Q 001295 415 V-------NRVIWSPDGSLFGVAYSR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-- 479 (1106)
Q Consensus 415 V-------~~l~~spdg~~las~~~d------~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~-- 479 (1106)
+ ..++|||||+++++++.+ ..|.+|++.+++... +..+ ....++|+| | ++++++.
T Consensus 102 ~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~--~~~~~~~sp-G---~l~~~~~~~ 171 (1045)
T 1k32_A 102 STGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP----LNLG--PATHILFAD-G---RRVIGRNTF 171 (1045)
T ss_dssp EETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE----CCSC--SCSEEEEET-T---EEEEEESCS
T ss_pred ccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEE----ecCC--CcceeeeCC-C---EEEEeccCC
Confidence 8 999999999977777644 458888888876432 3333 345778999 6 4666542
Q ss_pred ----------CCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCC-CceeEeeCCCCee
Q 001295 480 ----------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWC 548 (1106)
Q Consensus 480 ----------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v 548 (1106)
+...++|....+.....+.+|...+.++.|+++ .++++++.|+.+++|.+... .....+..+. .+
T Consensus 172 ~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d---~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~ 247 (1045)
T 1k32_A 172 ELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH---RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DY 247 (1045)
T ss_dssp CCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT---EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SS
T ss_pred CccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC---EEEEEEeccCceEEEEEeCCCCcceEecCCC-Cc
Confidence 345677754443556667899999999998643 67788888999999987642 2333333322 23
Q ss_pred EEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCC---------CCCCcCeEEEc
Q 001295 549 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG---------GLPASPRIRFN 619 (1106)
Q Consensus 549 ~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------~~~~v~~v~~s 619 (1106)
...+|+|||+ +++.+ .++.|++|++... .+..+..+. +...+.+++|+
T Consensus 248 ~~~~~SpDG~---------------------~la~~-~~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S 304 (1045)
T 1k32_A 248 YPRHLNTDGR---------------------RILFS-KGGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFS 304 (1045)
T ss_dssp CEEEEEESSS---------------------CEEEE-ETTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEE
T ss_pred ceeeEcCCCC---------------------EEEEE-eCCEEEEecCCce-EeeeeccCcccccccccccccccceeeec
Confidence 4445555554 56665 4899999999544 344544321 12258899999
Q ss_pred -cCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCC
Q 001295 620 -KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNG 698 (1106)
Q Consensus 620 -~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1106)
|||++|++++ ++.+++|+..++. ... +
T Consensus 305 ~pdG~~la~~~-~~~i~~~~~~~~~-~~~-~------------------------------------------------- 332 (1045)
T 1k32_A 305 PLDGDLIAFVS-RGQAFIQDVSGTY-VLK-V------------------------------------------------- 332 (1045)
T ss_dssp ECGGGCEEEEE-TTEEEEECTTSSB-EEE-C-------------------------------------------------
T ss_pred CCCCCEEEEEE-cCEEEEEcCCCCc-eEE-c-------------------------------------------------
Confidence 9999999888 6889999876541 000 0
Q ss_pred CccccCCCCccccccCCCceeeEecCCCCCCccceecccCcccccc-ceEEEEEcCCCceEEEeecCceEE-Eeeccccc
Q 001295 699 DVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT-KISRLIFTNSGNAILALASNAIHL-LWKWQRTE 776 (1106)
Q Consensus 699 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~dg~i~-iw~~~~~~ 776 (1106)
..+.. .+..++|+ +|+.++.++.++.+. +|++.
T Consensus 333 -----------------------------------------~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~--- 367 (1045)
T 1k32_A 333 -----------------------------------------PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYR--- 367 (1045)
T ss_dssp -----------------------------------------SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETT---
T ss_pred -----------------------------------------cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECC---
Confidence 01334 67889999 999999888877777 77654
Q ss_pred cCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCee
Q 001295 777 RNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAAT 855 (1106)
Q Consensus 777 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~ 855 (1106)
++.... +. .+...+..++|+|||++|++++ ++.|++||+.+++....+.+|...+.
T Consensus 368 -------------------~~~~~~--l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~ 424 (1045)
T 1k32_A 368 -------------------TGKAEK--FE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT 424 (1045)
T ss_dssp -------------------TCCEEE--CC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC
T ss_pred -------------------CCCceE--ec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCcc
Confidence 222222 11 2677899999999999999998 78999999999988887778888999
Q ss_pred EEEEecCCCceEEEeeCCC----------cEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCC
Q 001295 856 FLAFHPQDNNIIAIGMDDS----------SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 925 (1106)
Q Consensus 856 ~l~~s~~d~~~la~g~~dg----------~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~ 925 (1106)
+++||| |+++|++++.++ .|++||+.+++ +..+..|...+.+++|+|||++|++++.++...+|+...
T Consensus 425 ~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 425 DFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp CEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred ceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence 999999 899888887654 99999999888 677888999999999999999999999988888887543
Q ss_pred cccccc---ee--e--c---------------------ccCC-------CCCCCCCCceEEEcCCCcEEEE---------
Q 001295 926 WEKQKN---RF--L--Q---------------------IPTG-------RTPTAQSDTRVQFHQDQIHFLV--------- 961 (1106)
Q Consensus 926 ~~~~~~---~~--~--~---------------------~~~~-------~~~~~~~i~~~~~s~dg~~l~~--------- 961 (1106)
...... .. + . ...+ .......+..++++|||+++++
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~ 582 (1045)
T 1k32_A 503 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAA 582 (1045)
T ss_dssp SCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHH
T ss_pred cccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccc
Confidence 321000 00 0 0 0000 0011235678999999997874
Q ss_pred ---E--eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCce
Q 001295 962 ---V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1020 (1106)
Q Consensus 962 ---~--~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~ 1020 (1106)
+ ....+.+||+.+++..... ..+.+++|||||++|++++.| .|++||+.+++
T Consensus 583 ~~~~~~~~~~l~~~d~~~~~~~~l~------~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 583 YYQGAPEKGVLLKYDVKTRKVTEVK------NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp HHHCCCCCEEEEEEETTTCCEEEEE------EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred cccccCCCceEEEEECCCCcEEEee------cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 1 2457899999988764332 468899999999999999866 89999998887
No 57
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-36 Score=348.02 Aligned_cols=382 Identities=14% Similarity=0.205 Sum_probs=282.5
Q ss_pred EEccCCCEEEEEeCCCeEEEEEccCCceeeeeeee-ccccCCeeEEEEcC-CCCceEEEEecCCCcEEEEeCCC---Cc-
Q 001295 419 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEI-DAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATN---GA- 492 (1106)
Q Consensus 419 ~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l-~~h~~~V~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~---~~- 492 (1106)
.|+|+++.+++++ .|+.. ++.+. .+ .+|.+.|++++|+| +++ +|++|+.|++|+|||+.+ +.
T Consensus 34 ~f~~~~~~~~~~~------~w~~~-g~~~~---~~~~~h~~~V~~~~~s~~~~~--~l~s~s~dg~v~vwd~~~~~~~~~ 101 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLR-GKLIA---TLMENEPNSITSSAVSPGETP--YLITGSDQGVIKIWNLKEIIVGEV 101 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCC-CCEEE---EECTTTTSCEEEEEEECSSSC--EEEEEETTSEEEEEEHHHHHTTCC
T ss_pred hcCCccccccccc------ccccc-ceEEe---eeccCCCCceEEEEECCCCCC--EEEEecCCceEEEeECcccccCcc
Confidence 4788888888765 37743 44444 56 88999999999999 998 899999999999999876 43
Q ss_pred --eeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCC---CCCceeEeeCCCCeeEEEEEecCCCeEEEeeecc
Q 001295 493 --KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD---NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 567 (1106)
Q Consensus 493 --~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~ 567 (1106)
....+ +|...|.+++|++ ++.+|++++.||.|++||+. .+........+ .+..+.+++++ ...
T Consensus 102 ~~~~~~~-~h~~~v~~~~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~-------~~~ 169 (437)
T 3gre_A 102 YSSSLTY-DCSSTVTQITMIP--NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFG-------KNE 169 (437)
T ss_dssp CSCSEEE-ECSSCEEEEEECT--TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGS-------SCC
T ss_pred cceeeec-cCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEccCcc-------ccc
Confidence 33444 4999999999975 45799999999999999995 44444444433 67777777743 122
Q ss_pred ceeEEE--EcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchh
Q 001295 568 SLGVVQ--FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 645 (1106)
Q Consensus 568 ~i~~~~--~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 645 (1106)
.+.++. +++++.++++++.|+.|++||+.+++.+..+..+.+...|.+++|+|++++|++|+.||.|++||++++ +.
T Consensus 170 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~ 248 (437)
T 3gre_A 170 YAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN-VL 248 (437)
T ss_dssp CEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT-EE
T ss_pred CceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc-cE
Confidence 455555 678899999999999999999999999999987434558999999999999999999999999998765 11
Q ss_pred hhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCC
Q 001295 646 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 725 (1106)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 725 (1106)
+..+. +
T Consensus 249 ~~~~~------------------------------------------------------------------------~-- 254 (437)
T 3gre_A 249 IRSWS------------------------------------------------------------------------F-- 254 (437)
T ss_dssp EEEEB------------------------------------------------------------------------C--
T ss_pred EEEEe------------------------------------------------------------------------c--
Confidence 11100 0
Q ss_pred CCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccC
Q 001295 726 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 805 (1106)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 805 (1106)
T Consensus 255 -------------------------------------------------------------------------------- 254 (437)
T 3gre_A 255 -------------------------------------------------------------------------------- 254 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCeeEEEE----ecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEE
Q 001295 806 DSNPEEAVPCFAL----SKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 880 (1106)
Q Consensus 806 ~~~~~~~v~~l~~----s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd 880 (1106)
.|...|.++++ ++++++|++++ ||.|++||+.+++++..+.+|...+..+.|+| +++.+ .+..
T Consensus 255 --~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l----~~~~----- 322 (437)
T 3gre_A 255 --GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLP-IEKGL----EELN----- 322 (437)
T ss_dssp --TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSC-BCSSG----GGCC-----
T ss_pred --CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecc-ccccc----ccce-----
Confidence 02333445533 35677889988 89999999999999999999999999999999 65554 1111
Q ss_pred eecceEEEEecC--cccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcE
Q 001295 881 VRVDEVKSKLKG--HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 958 (1106)
Q Consensus 881 ~~~~~~~~~l~~--h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~ 958 (1106)
+.+ |...|++++|+ ++++|++++.|+.|++||+.+++... ...++...........++++..+
T Consensus 323 ---------~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 387 (437)
T 3gre_A 323 ---------FCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK-----AVISPSRFSDVFIPTQVTANLTM 387 (437)
T ss_dssp ---------CCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE-----EEECC--CCCEEEEEEEETTEEE
T ss_pred ---------ecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce-----EEecccccCceEEEEEeecceEE
Confidence 445 99999999999 88999999999999999999876432 22333322234555666666665
Q ss_pred EEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCC--CCEEEEEEcCCeEEEEE
Q 001295 959 FLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCD--SQLVYACFLDATVCVFS 1015 (1106)
Q Consensus 959 l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d--~~~l~t~s~Dg~i~vwd 1015 (1106)
++.. |+.......... ..|...|++++|+++ +.+|++|+.||+|+||+
T Consensus 388 ~~~~-------~~~~~~~~~~~~--~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 388 LLRK-------MKRTSTHSVDDS--LYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEE-------CC---------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EEEe-------cccccccccCcc--cccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 5543 233333333333 368999999999998 78999999999999995
No 58
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=6.8e-34 Score=330.01 Aligned_cols=319 Identities=16% Similarity=0.287 Sum_probs=265.5
Q ss_pred eccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCC
Q 001295 346 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 425 (1106)
Q Consensus 346 ~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 425 (1106)
..+|.+.|.. +++++|+ ++++|+.||+|+|||+.+++.+.. +.+|.+.|.+++|+ ++
T Consensus 114 l~~h~~~v~~-~~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~--~~ 170 (445)
T 2ovr_B 114 LKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMR--DN 170 (445)
T ss_dssp EECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEE--TT
T ss_pred ecccCCCcEE-EEEEcCC-EEEEEECCCcEEEEECCCCcEEEE-------------------EcCCCCCEEEEEec--CC
Confidence 4458887643 3556788 499999999999999999987763 68999999999997 67
Q ss_pred EEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeE
Q 001295 426 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 505 (1106)
Q Consensus 426 ~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 505 (1106)
+|++|+.||+|++||+.+++.+. .+.+|...|.+++|+ ++ .+++|+.|++|++||+.+++.+..+.+|...|.
T Consensus 171 ~l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~ 243 (445)
T 2ovr_B 171 IIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR 243 (445)
T ss_dssp EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCSSCEE
T ss_pred EEEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEE
Confidence 99999999999999999987665 678999999999995 44 799999999999999999999999999999999
Q ss_pred EEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEE
Q 001295 506 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 585 (1106)
Q Consensus 506 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 585 (1106)
++++ ++.++++|+.||.|++||+++......+..+...+.++.+ ++ .++++++
T Consensus 244 ~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~---------------------~~l~~~~ 296 (445)
T 2ovr_B 244 CVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DG---------------------IHVVSGS 296 (445)
T ss_dssp EEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CS---------------------SEEEEEE
T ss_pred EEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CC---------------------CEEEEEe
Confidence 9997 3468999999999999999988877777777777777766 33 4799999
Q ss_pred CCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCC
Q 001295 586 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP 665 (1106)
Q Consensus 586 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (1106)
.|+.|++||+.+++.+..+..+. ..+.++.+ +++++++|+.||.|++||+.++ +.+..+..
T Consensus 297 ~d~~i~i~d~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~-------------- 357 (445)
T 2ovr_B 297 LDTSIRVWDVETGNCIHTLTGHQ--SLTSGMEL--KDNILVSGNADSTVKIWDIKTG-QCLQTLQG-------------- 357 (445)
T ss_dssp TTSCEEEEETTTCCEEEEECCCC--SCEEEEEE--ETTEEEEEETTSCEEEEETTTC-CEEEEECS--------------
T ss_pred CCCeEEEEECCCCCEEEEEcCCc--ccEEEEEE--eCCEEEEEeCCCeEEEEECCCC-cEEEEEcc--------------
Confidence 99999999999999999987663 35655555 6789999999999999998665 11111000
Q ss_pred CcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccc
Q 001295 666 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK 745 (1106)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 745 (1106)
T Consensus 358 -------------------------------------------------------------------------------- 357 (445)
T 2ovr_B 358 -------------------------------------------------------------------------------- 357 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEE
Q 001295 746 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV 825 (1106)
Q Consensus 746 i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l 825 (1106)
. ..|...|.+++++ +++|
T Consensus 358 ----------------------------------------------------------~--~~~~~~v~~~~~~--~~~l 375 (445)
T 2ovr_B 358 ----------------------------------------------------------P--NKHQSAVTCLQFN--KNFV 375 (445)
T ss_dssp ----------------------------------------------------------T--TSCSSCEEEEEEC--SSEE
T ss_pred ----------------------------------------------------------C--CCCCCCEEEEEEC--CCEE
Confidence 0 0156677888874 5788
Q ss_pred EEEe-CCeEEEEEcCCCceeeee-----cCCCCCeeEEEEecCCCceEEEeeCCCc----EEEEEeec
Q 001295 826 MSAS-GGKISLFNMMTFKTMATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSS----IQIYNVRV 883 (1106)
Q Consensus 826 ~~~s-dg~i~vwd~~~~~~~~~~-----~~~~~~v~~l~~s~~d~~~la~g~~dg~----v~iwd~~~ 883 (1106)
++++ ||.|++||+.+++.+..+ .+|.+.|.+++|+| ++.++|+|+.||+ |.|||+..
T Consensus 376 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 376 ITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC-CEEEEEEcccCCCCccEEEEEECCC
Confidence 8888 899999999998888877 46788899999999 8999999999998 99999864
No 59
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.5e-33 Score=329.38 Aligned_cols=319 Identities=15% Similarity=0.244 Sum_probs=264.3
Q ss_pred eeccCCCCc-EEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC
Q 001295 345 RTLNQGSSP-MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 423 (1106)
Q Consensus 345 ~~~~h~~~v-~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd 423 (1106)
...+|.+.| .++.| +++ ++++|+.||+|++||+.+++.+.. +.+|.+.|.+++|+|+
T Consensus 116 ~l~~h~~~v~~~~~~--~~~-~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h~~~V~~l~~~~~ 173 (464)
T 3v7d_B 116 TLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWALKYAHG 173 (464)
T ss_dssp EEECCSSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCCSSCEEEEEECST
T ss_pred EEcCCCCCcEEEEEE--CCC-EEEEEcCCCcEEEEECCCCcEEEE-------------------EeCCCcCEEEEEEcCC
Confidence 344588775 66555 566 599999999999999999987763 6899999999999998
Q ss_pred CCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcC--CCCceEEEEecCCCcEEEEeCCCCce--------
Q 001295 424 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAK-------- 493 (1106)
Q Consensus 424 g~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~-------- 493 (1106)
+ +|++|+.||+|++||+.+++.+. .+.+|...|.+++|++ ++. ++++|+.|++|++||+.++..
T Consensus 174 ~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 247 (464)
T 3v7d_B 174 G-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGEEH 247 (464)
T ss_dssp T-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC------C
T ss_pred C-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCcccccccccC
Confidence 8 99999999999999999987665 6789999999999994 556 899999999999999987653
Q ss_pred ---------------eEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCC
Q 001295 494 ---------------QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 558 (1106)
Q Consensus 494 ---------------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 558 (1106)
+..+.+|...|.++. + ++.++++++.||.|++||+++.+....+..|...|.+++|+++++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 323 (464)
T 3v7d_B 248 DYPLVFHTPEENPYFVGVLRGHMASVRTVS--G--HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK 323 (464)
T ss_dssp CSSEEESCGGGCTTEEEEECCCSSCEEEEE--E--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT
T ss_pred CcceEeeccCCCeEEEEEccCccceEEEEc--C--CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCC
Confidence 557788999999885 2 346899999999999999998888777777777777777766665
Q ss_pred eEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEE
Q 001295 559 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 638 (1106)
Q Consensus 559 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 638 (1106)
++++++.||.|++||+.+++.+..+..| ...|.+++|+ +.+|++++.||.|++||
T Consensus 324 ---------------------~l~sg~~dg~i~vwd~~~~~~~~~~~~h--~~~v~~~~~~--~~~l~s~s~dg~v~vwd 378 (464)
T 3v7d_B 324 ---------------------RCISASMDTTIRIWDLENGELMYTLQGH--TALVGLLRLS--DKFLVSAAADGSIRGWD 378 (464)
T ss_dssp ---------------------EEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred ---------------------EEEEEeCCCcEEEEECCCCcEEEEEeCC--CCcEEEEEEc--CCEEEEEeCCCcEEEEE
Confidence 7999999999999999999999999876 4478899987 58999999999999999
Q ss_pred ccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCce
Q 001295 639 TSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKS 718 (1106)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 718 (1106)
+.++...
T Consensus 379 ~~~~~~~------------------------------------------------------------------------- 385 (464)
T 3v7d_B 379 ANDYSRK------------------------------------------------------------------------- 385 (464)
T ss_dssp TTTCCEE-------------------------------------------------------------------------
T ss_pred CCCCcee-------------------------------------------------------------------------
Confidence 8654100
Q ss_pred eeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCC
Q 001295 719 KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI 798 (1106)
Q Consensus 719 ~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 798 (1106)
...
T Consensus 386 ----------------------------------------~~~------------------------------------- 388 (464)
T 3v7d_B 386 ----------------------------------------FSY------------------------------------- 388 (464)
T ss_dssp ----------------------------------------EEE-------------------------------------
T ss_pred ----------------------------------------eee-------------------------------------
Confidence 000
Q ss_pred ccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeee-ecCCCCCeeEEEEecCCCceEEEeeCCCcEE
Q 001295 799 MMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQ 877 (1106)
Q Consensus 799 ~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~-~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~ 877 (1106)
.+...+..++++++++++++++||.|++||+.+++.+.. +..|...|.+++|+ ++.++++++.||.+.
T Consensus 389 ---------~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~~ 457 (464)
T 3v7d_B 389 ---------HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDGQSF 457 (464)
T ss_dssp ---------ECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETTEEE
T ss_pred ---------cCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCCeEE
Confidence 034445678899999999999999999999999999876 67788999999997 467777788888776
Q ss_pred EEEe
Q 001295 878 IYNV 881 (1106)
Q Consensus 878 iwd~ 881 (1106)
+|-+
T Consensus 458 i~~l 461 (464)
T 3v7d_B 458 LEIL 461 (464)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6543
No 60
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-36 Score=345.93 Aligned_cols=354 Identities=12% Similarity=0.078 Sum_probs=240.3
Q ss_pred CCeeEEEEEecCC---------CeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCccee----EEEccCCCCC
Q 001295 545 GRWCTTMAYSADG---------TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL----TSIDADGGLP 611 (1106)
Q Consensus 545 ~~~v~~~~~s~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~~ 611 (1106)
...|.+++|+|++ +.+..+...... ...+|+++.+++++.|++|+|||+.+++.. ..+..+ ..
T Consensus 133 ~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~--~~ 208 (524)
T 2j04_B 133 GGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--EPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHS--FG 208 (524)
T ss_dssp CC--CCCSCEEECCCCSSCSSEEEEEEEEEC--------------------CEEEEEEEEETTTCCEEEEEEEEEC--CC
T ss_pred CCceeEEEecccCCCCccCcCCeEEEEEEecccC--CccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEec--CC
Confidence 4567788888876 455554433211 124788889999999999999999887643 234443 34
Q ss_pred CcCeEEEccC------CCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccccc
Q 001295 612 ASPRIRFNKD------GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD 685 (1106)
Q Consensus 612 ~v~~v~~s~~------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1106)
.|.+++|+|+ +.+||+++.||+|++||+.++....... .
T Consensus 209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~----~------------------------------- 253 (524)
T 2j04_B 209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF----K------------------------------- 253 (524)
T ss_dssp SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE----E-------------------------------
T ss_pred cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc----e-------------------------------
Confidence 6999999996 5799999999999999997652100000 0
Q ss_pred ccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCc
Q 001295 686 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA 765 (1106)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 765 (1106)
.+. .....+ .+|...|.+++|++++ .|++++.||
T Consensus 254 ------------------------------------~~~-----~p~~~l----~~h~~~v~sv~~s~~~-~lasgs~Dg 287 (524)
T 2j04_B 254 ------------------------------------MCE-----KPSLTL----SLADSLITTFDFLSPT-TVVCGFKNG 287 (524)
T ss_dssp ------------------------------------CCC-----SCSEEE----CCTTTCEEEEEESSSS-EEEEEETTS
T ss_pred ------------------------------------eec-----CceEEE----EcCCCCEEEEEecCCC-eEEEEeCCC
Confidence 000 000000 2377889999999875 799999999
Q ss_pred eEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEE--EEecCC-CEEEEEe-CCeEEEEEcCCC
Q 001295 766 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF--ALSKND-SYVMSAS-GGKISLFNMMTF 841 (1106)
Q Consensus 766 ~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l--~~s~~~-~~l~~~s-dg~i~vwd~~~~ 841 (1106)
+|++||+... ......+.+ |...|.++ +|++++ ++|++++ |++|+|||++++
T Consensus 288 tV~lWD~~~~----------------------~~~~~~~~~--H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~ 343 (524)
T 2j04_B 288 FVAEFDLTDP----------------------EVPSFYDQV--HDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI 343 (524)
T ss_dssp EEEEEETTBC----------------------SSCSEEEEC--SSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH
T ss_pred EEEEEECCCC----------------------CCceEEeec--ccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC
Confidence 9999998632 111111222 89999999 578888 8999999 999999999998
Q ss_pred ceeeeecCCCC--CeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEE
Q 001295 842 KTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLC 919 (1106)
Q Consensus 842 ~~~~~~~~~~~--~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~ 919 (1106)
++...+.+|.. .|.+++|+| +++.+++++.|++|++||+.++.++..+.+|.+.|++|+|+|+|++|+||+.||+|+
T Consensus 344 ~~~~~~~~~~~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~ 422 (524)
T 2j04_B 344 ATTKTTVSRFRGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLI 422 (524)
T ss_dssp HHHCEEEEECSCCSCCCEEEET-TTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEE
T ss_pred CcccccccccccCcccceEeCC-CcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEE
Confidence 88777766653 588999999 888999999999999999999998888999999999999999999999999999999
Q ss_pred EEeCCCcccccceeecccCCCC--CCCCCCceEEEcCCCcEEEEEeCCeEEEEecC-CceEeeecccCCCCCCeeEEEEC
Q 001295 920 VWSSDGWEKQKNRFLQIPTGRT--PTAQSDTRVQFHQDQIHFLVVHETQLAIFETT-KLECVKQWVPRESSAPITHATFS 996 (1106)
Q Consensus 920 vwd~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~-~~~~~~~~~~~~h~~~v~~l~~s 996 (1106)
+||+... .+....... .....+..++|+|+|..+.... .+.+|+.. ++.++..+. +|...|.+++|+
T Consensus 423 lwd~~~~------~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~--~~~~~~~~~~g~~~~~l~--gh~~~V~~Vafs 492 (524)
T 2j04_B 423 ITNAARR------LLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDS--SYEVYPLTVNDVSKAKID--AHGINITCTKWN 492 (524)
T ss_dssp CCBSCSS------TTTCC------CCCCEEEECBCCSSSCEEEECC--CCCCCC---------------CCCSCCCEEEC
T ss_pred EEechHh------hccccccCccceeeeEEEEeccCCCCCeEEccC--CceecccccCCcceeeec--CCCceEEEEECC
Confidence 9998652 111111100 0011356889999998554322 23344432 455555554 889999999999
Q ss_pred CCCC---EEEEEEcCCeEEEEEcCC
Q 001295 997 CDSQ---LVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus 997 ~d~~---~l~t~s~Dg~i~vwd~~~ 1018 (1106)
|++. +||+|+.||+|+||++.-
T Consensus 493 p~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 493 ETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CSTTTTTEEEEECTTSEEEEEECSC
T ss_pred CCCCccHHHHhhccCceEEEEEccc
Confidence 9964 999999999999999763
No 61
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-34 Score=321.43 Aligned_cols=302 Identities=16% Similarity=0.245 Sum_probs=253.3
Q ss_pred ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295 407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 486 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 486 (1106)
.+.+|.+.|++++|+|+|++|++++.||.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKLW 101 (369)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEEE
T ss_pred EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEEE
Confidence 478999999999999999999999999999999999987665 6889999999999999999 89999999999999
Q ss_pred eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecC-----CeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEE
Q 001295 487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-----GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 561 (1106)
Q Consensus 487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 561 (1106)
|+.+++.+..+. |...|.+++|+++ +.++++++.+ +.|++||+........+
T Consensus 102 d~~~~~~~~~~~-~~~~v~~~~~~~~--~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~-------------------- 158 (369)
T 3zwl_B 102 DVSNGQCVATWK-SPVPVKRVEFSPC--GNYFLAILDNVMKNPGSINIYEIERDSATHEL-------------------- 158 (369)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECTT--SSEEEEEECCBTTBCCEEEEEEEEECTTTCCE--------------------
T ss_pred ECCCCcEEEEee-cCCCeEEEEEccC--CCEEEEecCCccCCCCEEEEEEecCCccceee--------------------
Confidence 999999999988 8899999998654 5789999988 99999988654322111
Q ss_pred EeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccC
Q 001295 562 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 641 (1106)
Q Consensus 562 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 641 (1106)
.. .....+..+..+.....+.+++|+|++++|++++.||.|++||+.+
T Consensus 159 --------------------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 206 (369)
T 3zwl_B 159 --------------------TK------------VSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN 206 (369)
T ss_dssp --------------------EE------------ECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred --------------------cc------------cccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence 00 0112223333333334789999999999999999999999999865
Q ss_pred CchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeE
Q 001295 642 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 721 (1106)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw 721 (1106)
+......
T Consensus 207 ~~~~~~~------------------------------------------------------------------------- 213 (369)
T 3zwl_B 207 NYEYVDS------------------------------------------------------------------------- 213 (369)
T ss_dssp TTEEEEE-------------------------------------------------------------------------
T ss_pred CcEeEEE-------------------------------------------------------------------------
Confidence 3110000
Q ss_pred ecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccc
Q 001295 722 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 801 (1106)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 801 (1106)
T Consensus 214 -------------------------------------------------------------------------------- 213 (369)
T 3zwl_B 214 -------------------------------------------------------------------------------- 213 (369)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCC------
Q 001295 802 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS------ 874 (1106)
Q Consensus 802 ~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg------ 874 (1106)
+. .|...|.+++|+|++++|++++ ||.|++||+.+++.+..+. +...+.+++|+| +++++++++.++
T Consensus 214 --~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~ 287 (369)
T 3zwl_B 214 --ID--LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITP-LKEFIILGGGQEAKDVTT 287 (369)
T ss_dssp --EE--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECS-SSSEEEEEECCC------
T ss_pred --Ee--cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecC-CCceEEEeecCCCceEEE
Confidence 00 1566788899999999999888 8999999999988888887 777899999999 899999999888
Q ss_pred --------cEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcc
Q 001295 875 --------SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 927 (1106)
Q Consensus 875 --------~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~ 927 (1106)
.+++||..+++.+..+.+|...|++++|+|++++|++++.||.|++|+++++.
T Consensus 288 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 288 TSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp -------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred EecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 89999999999999999999999999999999999999999999999998754
No 62
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.6e-34 Score=351.73 Aligned_cols=252 Identities=21% Similarity=0.297 Sum_probs=212.5
Q ss_pred ccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCE
Q 001295 347 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 426 (1106)
Q Consensus 347 ~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 426 (1106)
.+|.+.|++++|+|++..+|+||+.||+|+|||+.+....... ....+.+|...|.+++|+|+|++
T Consensus 379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~v~~s~~g~~ 444 (694)
T 3dm0_A 379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGV--------------AQRRLTGHSHFVEDVVLSSDGQF 444 (694)
T ss_dssp ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCE--------------EEEEEECCSSCEEEEEECTTSSE
T ss_pred ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccc--------------ccceecCCCCcEEEEEECCCCCE
Confidence 3599999999999987657999999999999999765322100 01136899999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEE---eccCCC
Q 001295 427 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---EGHEAP 503 (1106)
Q Consensus 427 las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~h~~~ 503 (1106)
|++|+.|++|+|||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|++|++||+......... .+|...
T Consensus 445 l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~ 519 (694)
T 3dm0_A 445 ALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDW 519 (694)
T ss_dssp EEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSC
T ss_pred EEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCc
Confidence 9999999999999999987665 6789999999999999999 7999999999999997655433322 468899
Q ss_pred eEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEE
Q 001295 504 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 583 (1106)
Q Consensus 504 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 583 (1106)
|.+++|+++.....+++++.|++|++||+++......+..|...|.+++|+|+++ +|++
T Consensus 520 v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~---------------------~l~s 578 (694)
T 3dm0_A 520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS---------------------LCAS 578 (694)
T ss_dssp EEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS---------------------EEEE
T ss_pred EEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCC---------------------EEEE
Confidence 9999998876557899999999999999998877777777777777777766665 7999
Q ss_pred EECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 584 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 584 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
++.|+.|++||+.+++.+..+..+ ..+.+++|+|++.++++++. +.|++||+.++
T Consensus 579 g~~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~~-~~i~iwd~~~~ 633 (694)
T 3dm0_A 579 GGKDGVVLLWDLAEGKKLYSLEAN---SVIHALCFSPNRYWLCAATE-HGIKIWDLESK 633 (694)
T ss_dssp EETTSBCEEEETTTTEEEECCBCS---SCEEEEEECSSSSEEEEEET-TEEEEEETTTT
T ss_pred EeCCCeEEEEECCCCceEEEecCC---CcEEEEEEcCCCcEEEEEcC-CCEEEEECCCC
Confidence 999999999999999988777543 35899999999998888765 56999999887
No 63
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=6.5e-35 Score=329.50 Aligned_cols=318 Identities=14% Similarity=0.195 Sum_probs=223.5
Q ss_pred ccCCCCcCeEEEEEccC----CCEEEEEeCCCeEEEEEccCCceeeeeeeec--cccCCeeEEEEcCC----CCceEEEE
Q 001295 407 LVKDPGVSVNRVIWSPD----GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID--AHVGGVNDIAFSHP----NKQLCVIT 476 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~spd----g~~las~~~d~~v~iwd~~~~~~~~~~~~l~--~h~~~V~~~~~s~d----~~~~~l~s 476 (1106)
+..+|.+.|.+++|+|+ ...+++++.++.|++||+.+++.+..+..+. .|...|.+++|+|+ +. +|++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~~ 90 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLAV 90 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEEE
Confidence 45799999999999984 4556666667799999999887766444333 26788999999999 55 8999
Q ss_pred ecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEe---eCCCCeeEEEEE
Q 001295 477 CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAY 553 (1106)
Q Consensus 477 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~ 553 (1106)
|+.|+.|++||+.+++.+..+.+|...|.+++|++. ++.+|++++.||.|++||+++.+....+ ..+...
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------ 163 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE------ 163 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC------
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCc------
Confidence 999999999999999999999999999999999762 4479999999999999999875544333 222222
Q ss_pred ecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCc
Q 001295 554 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG 633 (1106)
Q Consensus 554 s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 633 (1106)
|.+++|+|++++|++++.||.
T Consensus 164 -----------------------------------------------------------v~~~~~~~~~~~l~~~~~dg~ 184 (366)
T 3k26_A 164 -----------------------------------------------------------VLSADYDLLGEKIMSCGMDHS 184 (366)
T ss_dssp -----------------------------------------------------------EEEEEECTTSSEEEEEETTSC
T ss_pred -----------------------------------------------------------eeEEEECCCCCEEEEecCCCC
Confidence 444555555555666666666
Q ss_pred EEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCcccccc
Q 001295 634 IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEE 713 (1106)
Q Consensus 634 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 713 (1106)
|++||+.++ +....+..+. .+.+.+ ..+....
T Consensus 185 i~i~d~~~~-~~~~~~~~~~------------~~~~~~-----------------------------------~~~~~~~ 216 (366)
T 3k26_A 185 LKLWRINSK-RMMNAIKESY------------DYNPNK-----------------------------------TNRPFIS 216 (366)
T ss_dssp EEEEESCSH-HHHHHHHHHH------------TCCGGG-----------------------------------CSSCCCC
T ss_pred EEEEECCCC-ccccccceeE------------EecCCC-----------------------------------Ccccccc
Confidence 666665554 2222222100 001000 0000000
Q ss_pred CCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccC
Q 001295 714 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 793 (1106)
Q Consensus 714 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~ 793 (1106)
.......+..
T Consensus 217 ~~~~~~~~~~---------------------------------------------------------------------- 226 (366)
T 3k26_A 217 QKIHFPDFST---------------------------------------------------------------------- 226 (366)
T ss_dssp EEECCCSEEE----------------------------------------------------------------------
T ss_pred eeeccCcccc----------------------------------------------------------------------
Confidence 0000000000
Q ss_pred CCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCce--------------eeeecCCCCCeeEEE
Q 001295 794 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT--------------MATFMPPPPAATFLA 858 (1106)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~--------------~~~~~~~~~~v~~l~ 858 (1106)
. ..|...|.+++|+ ++++++++ ||.|++||+.++.. +..+..|...|++++
T Consensus 227 ----------~--~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 292 (366)
T 3k26_A 227 ----------R--DIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMR 292 (366)
T ss_dssp ----------C--SSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCC
T ss_pred ----------c--cCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEE
Confidence 0 0155556666665 45666665 56666666655433 566778889999999
Q ss_pred EecCC--CceEEEeeCCCcEEEEEeecce----EEEEecCc--ccCeeEEEEecCCCEEEEEcCCCcEEEEeCCC
Q 001295 859 FHPQD--NNIIAIGMDDSSIQIYNVRVDE----VKSKLKGH--SKRITGLAFSHALNVLVSSGADSQLCVWSSDG 925 (1106)
Q Consensus 859 ~s~~d--~~~la~g~~dg~v~iwd~~~~~----~~~~l~~h--~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~ 925 (1106)
|+| + +++|++|+.||.|++||+.+++ ....+.+| ...|++++|+|++++|++++.||.|++||+.+
T Consensus 293 ~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 293 FSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp CEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EcC-CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 999 7 9999999999999999999875 44578887 79999999999999999999999999999853
No 64
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=323.68 Aligned_cols=356 Identities=14% Similarity=0.159 Sum_probs=248.5
Q ss_pred cCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEEccCCceeeee
Q 001295 372 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQH 450 (1106)
Q Consensus 372 dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las~~~d~~v~iwd~~~~~~~~~~ 450 (1106)
++.++||++..++... ++.+|.+.|.+++|+| ++++||+|+.||.|++||+.+++.....
T Consensus 22 ~~~~~v~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 82 (408)
T 4a11_B 22 ESTRRVLGLELNKDRD-------------------VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYY 82 (408)
T ss_dssp HHHHHHHTEEECTTEE-------------------ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCE
T ss_pred cCcceeeccccCccee-------------------eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceE
Confidence 4567778777665544 3688999999999999 9999999999999999999988765432
Q ss_pred ee----------eccccCCeeEEEEcC-CCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccC-CceEE
Q 001295 451 LE----------IDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE-NIQFI 518 (1106)
Q Consensus 451 ~~----------l~~h~~~V~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l 518 (1106)
.. ..+|...|.+++|+| ++. +|++++.|+.|++||+.+++.+..+. +...+.++.+.+.. ++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 159 (408)
T 4a11_B 83 TCKAVCSIGRDHPDVHRYSVETVQWYPHDTG--MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLV 159 (408)
T ss_dssp EECEEEEECTTCTTCCSSCEEEEEECTTCTT--CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEE
T ss_pred eccccccccccccccCCCcEEEEEEccCCCc--EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEE
Confidence 11 135999999999999 555 79999999999999999999988887 77889999887643 45699
Q ss_pred EEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCc
Q 001295 519 FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 598 (1106)
Q Consensus 519 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 598 (1106)
++++.||.|++||+++......+..+...|.+++|+|++. ..+++++.||.|++||++++
T Consensus 160 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------------~ll~~~~~dg~i~i~d~~~~ 219 (408)
T 4a11_B 160 AVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYD--------------------YILATASADSRVKLWDVRRA 219 (408)
T ss_dssp EEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCT--------------------TEEEEEETTSCEEEEETTCS
T ss_pred EEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCC--------------------cEEEEEcCCCcEEEEECCCC
Confidence 9999999999999999888888888887777777777665 14889999999999999876
Q ss_pred c-eeEEEcc-------------CCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCC
Q 001295 599 Q-LLTSIDA-------------DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 664 (1106)
Q Consensus 599 ~-~~~~~~~-------------~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1106)
. .+..+.. ..+...|.+++|+|++++|++++.||.|++||+.++.. ......+...
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~--------- 289 (408)
T 4a11_B 220 SGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN-TLVNYGKVCN--------- 289 (408)
T ss_dssp SCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB-CCCCCCCCCC---------
T ss_pred CcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc-ceeccccccc---------
Confidence 5 4444421 23345799999999999999999999999999987621 1110000000
Q ss_pred CCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCcccccc
Q 001295 665 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 744 (1106)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 744 (1106)
.
T Consensus 290 -------------------------------------------------------------------------------~ 290 (408)
T 4a11_B 290 -------------------------------------------------------------------------------N 290 (408)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred ceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCE
Q 001295 745 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 824 (1106)
Q Consensus 745 ~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ 824 (1106)
..............+.+
T Consensus 291 ---------------------------------------------------------------~~~~~~~~~~~~~~~~~ 307 (408)
T 4a11_B 291 ---------------------------------------------------------------SKKGLKFTVSCGCSSEF 307 (408)
T ss_dssp ---------------------------------------------------------------CSSCCCCEECCSSSSCE
T ss_pred ---------------------------------------------------------------ccccceeEEecCCCceE
Confidence 00000111112223445
Q ss_pred EEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEec
Q 001295 825 VMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH 904 (1106)
Q Consensus 825 l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~ 904 (1106)
++++.++.|++||+.+++.+..+.+|...|++++|+| ++++|++|+.||.|++||+.+++.+.....+... ..+.+
T Consensus 308 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~ 383 (408)
T 4a11_B 308 VFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNP 383 (408)
T ss_dssp EEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC---------------------
T ss_pred EEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---ccccc
Confidence 5555589999999999999999999999999999999 8999999999999999999998877665543322 22333
Q ss_pred -CCCEEEEEcCCCcEEEEeCCC
Q 001295 905 -ALNVLVSSGADSQLCVWSSDG 925 (1106)
Q Consensus 905 -d~~~l~s~s~Dg~i~vwd~~~ 925 (1106)
+...+.+.+.|+.+++|+...
T Consensus 384 ~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 384 AFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp ----------------------
T ss_pred ccceeecccCccCceeecCCcc
Confidence 334566778899999998754
No 65
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=5.2e-34 Score=329.23 Aligned_cols=240 Identities=15% Similarity=0.229 Sum_probs=187.3
Q ss_pred ccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc-CCC
Q 001295 347 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGS 425 (1106)
Q Consensus 347 ~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~ 425 (1106)
..|...|+||+|+|.+..+||+|+.||+|+|||+.+++..... .+.+|.+.|++|+|+| +++
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~-----------------~~~gH~~~V~~l~f~p~~~~ 178 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI-----------------KGIGAGGSITGLKFNPLNTN 178 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE-----------------CCCSSSCCCCEEEECSSCTT
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE-----------------EccCCCCCEEEEEEeCCCCC
Confidence 3488999999999965557999999999999999887654321 2578999999999998 789
Q ss_pred EEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeE
Q 001295 426 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 505 (1106)
Q Consensus 426 ~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 505 (1106)
+|++|+.||+|+|||++++.. ........+...+.+++|+|+++ +|++|+.||.|++||++ ++.+..+.+|...|.
T Consensus 179 ~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~ 254 (435)
T 4e54_B 179 QFYASSMEGTTRLQDFKGNIL-RVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRMHKKKVT 254 (435)
T ss_dssp EEEEECSSSCEEEEETTSCEE-EEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBCCSSCEE
T ss_pred EEEEEeCCCEEEEeeccCCce-eEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEecccceEE
Confidence 999999999999999987543 32223334556789999999999 89999999999999975 566788899999999
Q ss_pred EEeccccCCceEEEEEecCCeEEEEeCCCCCceeEe---eCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEE
Q 001295 506 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 582 (1106)
Q Consensus 506 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 582 (1106)
+++|++..+ .+|++|+.|+.|++||+++......+ ..|...|.+++|+ |++.+|+
T Consensus 255 ~v~~~p~~~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s---------------------pdg~~l~ 312 (435)
T 4e54_B 255 HVALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFS---------------------PDGARLL 312 (435)
T ss_dssp EEEECTTCS-SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBC---------------------TTSSEEE
T ss_pred eeeecCCCc-eEEEEecCcceeeEEecccccccceEEEeeeccccccceeEC---------------------CCCCeeE
Confidence 999987654 58999999999999999876544322 3444555555554 4555899
Q ss_pred EEECCCeEEEEECCCcceeEEEccCCCC----CCcCeEEEccCCCEEEEEe
Q 001295 583 AAGDDFSIKFWDMDSVQLLTSIDADGGL----PASPRIRFNKDGCLLAVST 629 (1106)
Q Consensus 583 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~v~~v~~s~~~~~l~~~~ 629 (1106)
+++.|+.|++||+.++.....+..+... ..+..+.|+|++.+++++.
T Consensus 313 s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (435)
T 4e54_B 313 TTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGR 363 (435)
T ss_dssp EEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEEC
T ss_pred EEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEE
Confidence 9999999999999999888777654321 1233456677666666554
No 66
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.6e-33 Score=320.33 Aligned_cols=299 Identities=15% Similarity=0.192 Sum_probs=243.7
Q ss_pred eeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCc------eeEEEeccCCCeEEEecccc--CCc---eEE
Q 001295 450 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA------KQYIFEGHEAPVYSVCPHHK--ENI---QFI 518 (1106)
Q Consensus 450 ~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~------~~~~~~~h~~~v~~~~~~~~--~~~---~~l 518 (1106)
...+.+|.+.|++++|+| + +|++|+.||.|++||+.+++ .+..+.+|...|.+++|+++ .++ .+|
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--S--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEESSCSSSCEEEEEECS--S--EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC--C--eEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 346789999999999998 4 79999999999999999988 78899999999999999765 236 799
Q ss_pred EEEecCCeEEEEeCCCCCc-----eeEeeCC-----CCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCE-EEEEECC
Q 001295 519 FSTALDGKIKAWLYDNLGS-----RVDYEAP-----GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR-FLAAGDD 587 (1106)
Q Consensus 519 ~s~~~dg~i~iwd~~~~~~-----~~~~~~~-----~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d 587 (1106)
++++.||.|++||+.+... ...+..+ ...|.+++|++... |++++ |++++.|
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----------------~~~~~~l~~~~~d 147 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND-----------------RLLSHRLVATDVK 147 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC---------------------CEEEEEEETT
T ss_pred EEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccC-----------------CCCceEEEEEeCC
Confidence 9999999999999988765 5555555 24455555540000 45558 9999999
Q ss_pred CeEEEEECCC------cceeE-----EEcc-----CCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcc
Q 001295 588 FSIKFWDMDS------VQLLT-----SIDA-----DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 651 (1106)
Q Consensus 588 ~~i~iwd~~~------~~~~~-----~~~~-----~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 651 (1106)
|.|++||+.+ ++.+. .+.. ..+...|.+++|+|++ ++++++.||.|++||+.++ +.+..+..
T Consensus 148 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~ 225 (397)
T 1sq9_A 148 GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-RPLYNFES 225 (397)
T ss_dssp SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT-EEEEEEEC
T ss_pred CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC-ceeEEEec
Confidence 9999999998 77666 6644 3445679999999999 9999999999999998654 11110000
Q ss_pred cccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCcc
Q 001295 652 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 731 (1106)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~ 731 (1106)
T Consensus 226 -------------------------------------------------------------------------------- 225 (397)
T 1sq9_A 226 -------------------------------------------------------------------------------- 225 (397)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCC--
Q 001295 732 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP-- 809 (1106)
Q Consensus 732 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-- 809 (1106)
. ..|
T Consensus 226 ------------------------------------------------------------------------~--~~h~~ 231 (397)
T 1sq9_A 226 ------------------------------------------------------------------------Q--HSMIN 231 (397)
T ss_dssp ------------------------------------------------------------------------C--C---C
T ss_pred ------------------------------------------------------------------------c--ccccc
Confidence 0 004
Q ss_pred -CCCeeEEEEecCCCEEEEEe-C---CeEEEEEcCCCceeeeecC-------------CCCCeeEEEEecCCCceEEEee
Q 001295 810 -EEAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFKTMATFMP-------------PPPAATFLAFHPQDNNIIAIGM 871 (1106)
Q Consensus 810 -~~~v~~l~~s~~~~~l~~~s-d---g~i~vwd~~~~~~~~~~~~-------------~~~~v~~l~~s~~d~~~la~g~ 871 (1106)
...|.+++|+|++++|++++ | |.|++||+.+++.+..+.+ |...|.+++|+| ++++|++|+
T Consensus 232 ~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 310 (397)
T 1sq9_A 232 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAG 310 (397)
T ss_dssp CCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEE
T ss_pred cCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEe
Confidence 66788888888888888887 7 8899999888888888887 899999999999 899999999
Q ss_pred CCCcEEEEEeecceEEEEec------Cc---------------ccCeeEEEEecCC----------CEEEEEcCCCcEEE
Q 001295 872 DDSSIQIYNVRVDEVKSKLK------GH---------------SKRITGLAFSHAL----------NVLVSSGADSQLCV 920 (1106)
Q Consensus 872 ~dg~v~iwd~~~~~~~~~l~------~h---------------~~~V~~l~~s~d~----------~~l~s~s~Dg~i~v 920 (1106)
.||.|++||+.+++++..+. +| ...|++++|+|++ ++|++++.||.|++
T Consensus 311 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~i 390 (397)
T 1sq9_A 311 WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRW 390 (397)
T ss_dssp TTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEE
T ss_pred CCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEE
Confidence 99999999999999999999 88 9999999999998 79999999999999
Q ss_pred EeCCCc
Q 001295 921 WSSDGW 926 (1106)
Q Consensus 921 wd~~~~ 926 (1106)
|++.++
T Consensus 391 w~~~~g 396 (397)
T 1sq9_A 391 FREAGG 396 (397)
T ss_dssp EEEEC-
T ss_pred EEcCCC
Confidence 999874
No 67
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=323.24 Aligned_cols=361 Identities=12% Similarity=0.155 Sum_probs=248.3
Q ss_pred CCeEEEEECCCcceeEEEccCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCC
Q 001295 587 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP 665 (1106)
Q Consensus 587 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (1106)
++.+++|++..++....+.+| ...|.+++|+| ++++|++|+.||.|++||+.++. ....+.....
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~----------- 87 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIH--GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSS-RQSYYTCKAV----------- 87 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCC--SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCS-SSSCEEECEE-----------
T ss_pred cCcceeeccccCcceeeeecc--CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCc-ccceEecccc-----------
Confidence 456788888888888888766 45899999999 99999999999999999998762 2211110000
Q ss_pred CcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccc
Q 001295 666 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK 745 (1106)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 745 (1106)
.... .....+|...
T Consensus 88 -------------------------------------------------------~~~~-----------~~~~~~~~~~ 101 (408)
T 4a11_B 88 -------------------------------------------------------CSIG-----------RDHPDVHRYS 101 (408)
T ss_dssp -------------------------------------------------------EEEC-----------TTCTTCCSSC
T ss_pred -------------------------------------------------------cccc-----------ccccccCCCc
Confidence 0000 0000237889
Q ss_pred eEEEEEcC-CCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCC--
Q 001295 746 ISRLIFTN-SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND-- 822 (1106)
Q Consensus 746 i~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~-- 822 (1106)
|.+++|+| ++..+++++.||.|++|++... ..... + .+...+.++++++.+
T Consensus 102 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----------------------~~~~~-~---~~~~~~~~~~~~~~~~~ 155 (408)
T 4a11_B 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTL----------------------QTADV-F---NFEETVYSHHMSPVSTK 155 (408)
T ss_dssp EEEEEECTTCTTCEEEEETTSEEEEEETTTT----------------------EEEEE-E---ECSSCEEEEEECSSCSS
T ss_pred EEEEEEccCCCcEEEEEeCCCeEEEeeCCCC----------------------cccee-c---cCCCceeeeEeecCCCC
Confidence 99999999 7789999999999999987632 21111 1 156778999999854
Q ss_pred -CEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCc-eEEEeeCCCcEEEEEeecce-EEEEe--------
Q 001295 823 -SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRVDE-VKSKL-------- 890 (1106)
Q Consensus 823 -~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~-~la~g~~dg~v~iwd~~~~~-~~~~l-------- 890 (1106)
.++++++ +|.|++||+.+++.+..+..|...|++++|+| ++. +|++|+.||.|++||+.++. .+..+
T Consensus 156 ~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 234 (408)
T 4a11_B 156 HCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS 234 (408)
T ss_dssp CCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSC
T ss_pred CcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccc
Confidence 4899888 89999999999999999999999999999999 665 69999999999999998764 34444
Q ss_pred -------cCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEe
Q 001295 891 -------KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH 963 (1106)
Q Consensus 891 -------~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 963 (1106)
.+|...|++++|+|++++|++++.||.|++||+.+++.............. ............+.+++++.
T Consensus 235 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 312 (408)
T 4a11_B 235 QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSK--KGLKFTVSCGCSSEFVFVPY 312 (408)
T ss_dssp CCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCS--SCCCCEECCSSSSCEEEEEE
T ss_pred eeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccccccc--ccceeEEecCCCceEEEEec
Confidence 579999999999999999999999999999999987643221111111110 11222333344556666689
Q ss_pred CCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccce
Q 001295 964 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1043 (1106)
Q Consensus 964 d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1043 (1106)
++.|++||+.+++.+..+. +|...|++++|+|++++|++++.||.|++||+.+++.+...... ..
T Consensus 313 ~~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-----------~~-- 377 (408)
T 4a11_B 313 GSTIAVYTVYSGEQITMLK--GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDET-----------TT-- 377 (408)
T ss_dssp TTEEEEEETTTCCEEEEEC--CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-------------------------
T ss_pred CCEEEEEECcCCcceeeec--cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCce-----------Ee--
Confidence 9999999999999998876 88999999999999999999999999999999999877654311 01
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEeecC
Q 001295 1044 VIAAHPQEPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus 1044 ~~~~~~~d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
...+.+.+...+.+.+.|+.+++|+...
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 378 KSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp ----------------------------
T ss_pred ccccccccceeecccCccCceeecCCcc
Confidence 1233343456677888899999998653
No 68
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.8e-33 Score=341.74 Aligned_cols=211 Identities=18% Similarity=0.280 Sum_probs=176.5
Q ss_pred ccCCCCcCeEEEEEccC-CCEEEEEeCCCeEEEEEccCCcee--eeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcE
Q 001295 407 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDEV--RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 483 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~spd-g~~las~~~d~~v~iwd~~~~~~~--~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i 483 (1106)
.+.+|.+.|++++|+|+ +++|++|+.|++|+|||+.+.... .....+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sgs~Dg~v 454 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGEL 454 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEEeCCCcE
Confidence 47899999999999996 479999999999999999864321 12346889999999999999999 89999999999
Q ss_pred EEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEe---eCCCCeeEEEEEecCCCeE
Q 001295 484 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAYSADGTRT 560 (1106)
Q Consensus 484 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~~ 560 (1106)
+|||+.+++.+..+.+|...|.+++|+++ +.+|++|+.|++|++||.......... ..|...|.+++|+|++.
T Consensus 455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-- 530 (694)
T 3dm0_A 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLD--NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL-- 530 (694)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECTT--SSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS--
T ss_pred EEEECCCCcceeEEeCCCCCEEEEEEeCC--CCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC--
Confidence 99999999999999999999999998754 478999999999999997643221111 23444555555555442
Q ss_pred EEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEcc
Q 001295 561 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 640 (1106)
Q Consensus 561 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 640 (1106)
...+++++.|+.|++||+.+++....+.+| ...|.+++|+|++++|++|+.||.|++||+.
T Consensus 531 -----------------~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h--~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~ 591 (694)
T 3dm0_A 531 -----------------QPTIVSASWDKTVKVWNLSNCKLRSTLAGH--TGYVSTVAVSPDGSLCASGGKDGVVLLWDLA 591 (694)
T ss_dssp -----------------SCEEEEEETTSCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSBCEEEETT
T ss_pred -----------------cceEEEEeCCCeEEEEECCCCcEEEEEcCC--CCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 146999999999999999999999888876 4479999999999999999999999999987
Q ss_pred CC
Q 001295 641 DG 642 (1106)
Q Consensus 641 ~~ 642 (1106)
++
T Consensus 592 ~~ 593 (694)
T 3dm0_A 592 EG 593 (694)
T ss_dssp TT
T ss_pred CC
Confidence 66
No 69
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-32 Score=308.51 Aligned_cols=307 Identities=12% Similarity=0.118 Sum_probs=245.1
Q ss_pred CcceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEE
Q 001295 340 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 419 (1106)
Q Consensus 340 ~~~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 419 (1106)
..+.....+|.+.|++++|+|+|++ |++|+.||.|+|||+.+++.+.. +.+|...|.+++
T Consensus 22 ~~~~~~l~~h~~~v~~~~~s~~~~~-l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~ 81 (369)
T 3zwl_B 22 HMKAIKLTGHERPLTQVKYNKEGDL-LFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSID 81 (369)
T ss_dssp SEEEEEEECCSSCEEEEEECTTSCE-EEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEE
T ss_pred ccccEEEEEeeceEEEEEEcCCCCE-EEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEE
Confidence 3344555669999999999999995 99999999999999999887763 688999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCC-----CcEEEEeCCCCc--
Q 001295 420 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-----KTIKVWDATNGA-- 492 (1106)
Q Consensus 420 ~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d-----~~i~iwd~~~~~-- 492 (1106)
|+|++++|++++.||.|++||+.+++.+. .+. |...|.+++|+|+++ ++++++.+ +.|++||+.++.
T Consensus 82 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~ 155 (369)
T 3zwl_B 82 VDCFTKYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSAT 155 (369)
T ss_dssp ECTTSSEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTT
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccc
Confidence 99999999999999999999999988766 343 888999999999999 78999888 999999998654
Q ss_pred ---------eeEEEeccCC--CeEEEeccccCCceEEEEEecCCeEEEEeCCC-CCceeEeeCCCCeeEEEEEecCCCeE
Q 001295 493 ---------KQYIFEGHEA--PVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRT 560 (1106)
Q Consensus 493 ---------~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~ 560 (1106)
.+..+..|.. .+.+++|+++ +.+|++++.||.|++||+++ ......+..+...|.+++|+|+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-- 231 (369)
T 3zwl_B 156 HELTKVSEEPIHKIITHEGLDAATVAGWSTK--GKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLT-- 231 (369)
T ss_dssp CCEEEECSSCSEEEECCTTCCCEEEEEECGG--GCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSS--
T ss_pred eeecccccceeeeccCCcCccceeEEEEcCC--CCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCC--
Confidence 4455666766 8999998764 47999999999999999998 455556666666666666665554
Q ss_pred EEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEcc
Q 001295 561 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 640 (1106)
Q Consensus 561 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 640 (1106)
+|++++.|+.|++||+.+++.+..+.. ...+.+++|+|+++++++++.++...+|...
T Consensus 232 -------------------~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 289 (369)
T 3zwl_B 232 -------------------YFITSSRDTNSFLVDVSTLQVLKKYET---DCPLNTAVITPLKEFIILGGGQEAKDVTTTS 289 (369)
T ss_dssp -------------------EEEEEETTSEEEEEETTTCCEEEEEEC---SSCEEEEEECSSSSEEEEEECCC--------
T ss_pred -------------------EEEEecCCceEEEEECCCCceeeeecC---CCCceeEEecCCCceEEEeecCCCceEEEEe
Confidence 799999999999999999999988873 3468999999999999999999876666442
Q ss_pred CCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceee
Q 001295 641 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV 720 (1106)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v 720 (1106)
.. .....+++
T Consensus 290 ~~----------------------------------------------------------------------~~~~~i~~ 299 (369)
T 3zwl_B 290 AN----------------------------------------------------------------------EGKFEARF 299 (369)
T ss_dssp ---------------------------------------------------------------------------CEEEE
T ss_pred cC----------------------------------------------------------------------CCcceeEE
Confidence 21 00125667
Q ss_pred EecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeecccc
Q 001295 721 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRT 775 (1106)
Q Consensus 721 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 775 (1106)
|+.........+ .+|...|.+++|+|++++|++++.||.|++|++...
T Consensus 300 ~d~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 300 YHKIFEEEIGRV-------QGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp EETTTCCEEEEE-------ECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred EecCCCcchhhe-------ecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 776543221111 247889999999999999999999999999998754
No 70
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=7.4e-33 Score=311.43 Aligned_cols=299 Identities=11% Similarity=0.166 Sum_probs=238.7
Q ss_pred eeccccCCeeEEEEcCCCCceEEEEecC---CCcEEEEeCCCCceeEEE-eccCCCeEEEeccccC-CceEEEEEecCCe
Q 001295 452 EIDAHVGGVNDIAFSHPNKQLCVITCGD---DKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKE-NIQFIFSTALDGK 526 (1106)
Q Consensus 452 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~-~~~~l~s~~~dg~ 526 (1106)
.+.+|...|.+++|+|++.. ++++|+. |+.|++||+.+++..... .+|...|.+++|+++. ++.+|++++.||.
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~-l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAK-FVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEECSSCEEEEEECTTSSE-EEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hccCCCCceEEEEEcCCCce-EEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 45689999999999999975 5677776 999999999998876543 3799999999998763 2579999999999
Q ss_pred EEEEeCCCCC-ceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcc-eeEEE
Q 001295 527 IKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTSI 604 (1106)
Q Consensus 527 i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~ 604 (1106)
|++||+.+.. ....+..|...|.++.|.+. ++|+|++++|++++.|+.|++||+.+++ .+..+
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 156 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGG---------------LGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANM 156 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESG---------------GGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEE
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccc---------------cccCCCccEEEEEeCCCeEEEEeCCCCCCcceec
Confidence 9999999887 77788888888888876542 2356677799999999999999999887 67777
Q ss_pred ccCCC--CCCcCeEE----EccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhh
Q 001295 605 DADGG--LPASPRIR----FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAA 678 (1106)
Q Consensus 605 ~~~~~--~~~v~~v~----~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1106)
..+.. ...+.+++ |+|+++++++++.||.|++||+.++.. ...
T Consensus 157 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~------------------------------ 205 (357)
T 3i2n_A 157 EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL-RWE------------------------------ 205 (357)
T ss_dssp CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE-EEE------------------------------
T ss_pred cccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce-eee------------------------------
Confidence 65433 23677787 788999999999999999999866510 000
Q ss_pred cccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceE
Q 001295 679 TSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAI 758 (1106)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 758 (1106)
.
T Consensus 206 -------------------------------------------------------------~------------------ 206 (357)
T 3i2n_A 206 -------------------------------------------------------------T------------------ 206 (357)
T ss_dssp -------------------------------------------------------------E------------------
T ss_pred -------------------------------------------------------------c------------------
Confidence 0
Q ss_pred EEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEec---CCCEEEEEe-CCeEE
Q 001295 759 LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK---NDSYVMSAS-GGKIS 834 (1106)
Q Consensus 759 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~---~~~~l~~~s-dg~i~ 834 (1106)
.|...|.+++|+| ++.++++++ ||.|+
T Consensus 207 -------------------------------------------------~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 237 (357)
T 3i2n_A 207 -------------------------------------------------NIKNGVCSLEFDRKDISMNKLVATSLEGKFH 237 (357)
T ss_dssp -------------------------------------------------ECSSCEEEEEESCSSSSCCEEEEEESTTEEE
T ss_pred -------------------------------------------------CCCCceEEEEcCCCCCCCCEEEEECCCCeEE
Confidence 0445566677777 677777776 67777
Q ss_pred EEEcCCCceeeeec-----CCCCCeeEEEEecCCCc-eEEEeeCCCcEEEEEeecc-------------------eEEEE
Q 001295 835 LFNMMTFKTMATFM-----PPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRVD-------------------EVKSK 889 (1106)
Q Consensus 835 vwd~~~~~~~~~~~-----~~~~~v~~l~~s~~d~~-~la~g~~dg~v~iwd~~~~-------------------~~~~~ 889 (1106)
+||+.+++....+. +|...|++++|+| ++. +|++|+.||.|++||+.++ +.+..
T Consensus 238 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (357)
T 3i2n_A 238 VFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP-QNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQN 316 (357)
T ss_dssp EEEEEEEETTTEEEEEEEECCSSCEEEEEEET-TEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEE
T ss_pred EEeCcCCCcccceeeeccCCCcCCEEEEEECC-CCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeec
Confidence 77777665555444 8999999999999 776 8999999999999999853 56788
Q ss_pred ecCcccCeeEEEEecCCCEEE-EEcCCCcEEEEeCCCc
Q 001295 890 LKGHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDGW 926 (1106)
Q Consensus 890 l~~h~~~V~~l~~s~d~~~l~-s~s~Dg~i~vwd~~~~ 926 (1106)
+.+|...|++++|+|++++|+ +++.|+.|++||+.+.
T Consensus 317 ~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 317 VTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred cccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 899999999999999999998 8999999999999874
No 71
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=9.3e-33 Score=300.57 Aligned_cols=254 Identities=16% Similarity=0.200 Sum_probs=207.4
Q ss_pred ccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCc--ceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc--
Q 001295 347 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-- 422 (1106)
Q Consensus 347 ~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-- 422 (1106)
.+|.+.|++++|+|+|++ ||+|+.|++|+|||+.++ +.+. .+.+|.+.|.+++|+|
T Consensus 6 ~~h~~~V~~~~~s~~g~~-las~s~D~~v~iw~~~~~~~~~~~-------------------~l~gH~~~V~~v~~s~~~ 65 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGKR-MATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHPK 65 (297)
T ss_dssp CSCSSCEEEEEECTTSSE-EEEEETTSCEEEEEBCSSCBCCCE-------------------EECCCSSCEEEEEECCGG
T ss_pred cCCcCceEEEEECCCCCE-EEEEeCCCEEEEEecCCCCcEEEE-------------------EEccccCCeEEEEecCCC
Confidence 359999999999999995 999999999999999753 3332 3789999999999987
Q ss_pred CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCC--CCceEEEEecCCCcEEEEeCCCCc--eeEEEe
Q 001295 423 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGA--KQYIFE 498 (1106)
Q Consensus 423 dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~ 498 (1106)
+|++||+|+.|++|+|||+.+++.. ....+.+|...|.+++|+|+ +. +|++++.|++|++||++++. ....+.
T Consensus 66 ~g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~~ 142 (297)
T 2pm7_B 66 FGTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPIIID 142 (297)
T ss_dssp GCSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEEEE
T ss_pred cCCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeeeee
Confidence 4899999999999999999987522 23357789999999999998 67 89999999999999998764 246788
Q ss_pred ccCCCeEEEeccccC-----------CceEEEEEecCCeEEEEeCCCCC----ceeEeeCCCCeeEEEEEecCCCeEEEe
Q 001295 499 GHEAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLG----SRVDYEAPGRWCTTMAYSADGTRTYQG 563 (1106)
Q Consensus 499 ~h~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~~~~~ 563 (1106)
+|...|.+++|++.. ++.+|++|+.|++|++||+++.. ....+..|...|.+++|+|++.
T Consensus 143 ~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~----- 217 (297)
T 2pm7_B 143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL----- 217 (297)
T ss_dssp CCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS-----
T ss_pred cccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCC-----
Confidence 999999999998752 24689999999999999998765 3345667777777777777641
Q ss_pred eeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcc---eeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEcc
Q 001295 564 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 640 (1106)
Q Consensus 564 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 640 (1106)
.+.+|++++.|++|++||+.++. ....+..+.+...|.+++|+|++++|++++.||.|++|+..
T Consensus 218 -------------~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 218 -------------LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp -------------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred -------------CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 02479999999999999997743 12233223445679999999999999999999999999975
Q ss_pred C
Q 001295 641 D 641 (1106)
Q Consensus 641 ~ 641 (1106)
.
T Consensus 285 ~ 285 (297)
T 2pm7_B 285 L 285 (297)
T ss_dssp T
T ss_pred C
Confidence 3
No 72
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=7.8e-33 Score=314.33 Aligned_cols=249 Identities=14% Similarity=0.203 Sum_probs=193.2
Q ss_pred ccCCCCcEEEEEecCC-CeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc-CC
Q 001295 347 LNQGSSPMSMDFHPVQ-QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DG 424 (1106)
Q Consensus 347 ~~h~~~v~~~~~sp~g-~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg 424 (1106)
.+|...|++++|+|+| + +|++|+.||.|+|||+.+++..... .+.+|...|.+++|+| ++
T Consensus 70 ~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~-----------------~~~~h~~~v~~~~~~~~~~ 131 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTHPT-TVAVGSKGGDIILWDYDVQNKTSFI-----------------QGMGPGDAITGMKFNQFNT 131 (383)
T ss_dssp CCCSSCEEEEEECSSCTT-EEEEEEBTSCEEEEETTSTTCEEEE-----------------CCCSTTCBEEEEEEETTEE
T ss_pred cCCCCCEEEEEECCCCCC-EEEEEcCCCeEEEEeCCCcccceee-----------------ecCCcCCceeEEEeCCCCC
Confidence 4599999999999999 6 6999999999999999988766431 1347999999999999 78
Q ss_pred CEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCe
Q 001295 425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 504 (1106)
Q Consensus 425 ~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 504 (1106)
++|++++.|+.|++||+.+ ..+.......+|...|.+++|+|+++ +|++|+.|+.|++||+ +++.+..+.+|...|
T Consensus 132 ~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v 207 (383)
T 3ei3_B 132 NQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEIFKEKLHKAKV 207 (383)
T ss_dssp EEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEEEEEECSSSCE
T ss_pred CEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEEEEeccCCCcE
Confidence 9999999999999999996 44444334445668999999999999 8999999999999998 688899999999999
Q ss_pred EEEeccccCCce-EEEEEecCCeEEEEeCCCCC----ceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcC-CC
Q 001295 505 YSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLG----SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT-TK 578 (1106)
Q Consensus 505 ~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~-~~ 578 (1106)
.+++|+++. . +|++++.|+.|++||+++.. ....+ .+... +.+++|+| ++
T Consensus 208 ~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~---------------------v~~~~~s~~~~ 263 (383)
T 3ei3_B 208 THAEFNPRC--DWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKP---------------------VNAAYFNPTDS 263 (383)
T ss_dssp EEEEECSSC--TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSC---------------------EEEEEECTTTS
T ss_pred EEEEECCCC--CCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCc---------------------eEEEEEcCCCC
Confidence 999997654 5 89999999999999998732 22222 34444 44555555 55
Q ss_pred CEEEEEECCCeEEEEECCCcceeEEEccCC-----CCCCcCeEEEccCCCEEEE---------EeCCCcEEEEEccCC
Q 001295 579 NRFLAAGDDFSIKFWDMDSVQLLTSIDADG-----GLPASPRIRFNKDGCLLAV---------STNDNGIKILATSDG 642 (1106)
Q Consensus 579 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~~---------~~~dg~i~iwd~~~~ 642 (1106)
.+|++++.|+.|++||+.+++....+..+. +...+. +.|+|++..+++ ++.||.|++||+.++
T Consensus 264 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~ 340 (383)
T 3ei3_B 264 TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK-ATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSG 340 (383)
T ss_dssp CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCC-CEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTC
T ss_pred CEEEEEcCCCcEEEEECCCCccccccccccccccccccceE-EeccCCCCceEEEecCCcccccCCCCeEEEEecCCC
Confidence 689999999999999999988777665442 122233 456665555543 345555666655444
No 73
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=8.1e-33 Score=314.24 Aligned_cols=308 Identities=12% Similarity=0.158 Sum_probs=239.3
Q ss_pred EEECCCcceeEEEccCCCCCCcCeEEEccCC-CEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCch
Q 001295 592 FWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPI 670 (1106)
Q Consensus 592 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1106)
+|++...+....+..| ...|.+++|+|++ ++|++|+.||.|++||+.++. ....+
T Consensus 57 ~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~--------------------- 112 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPF--DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN-KTSFI--------------------- 112 (383)
T ss_dssp HHHHTTCEEEEEECCC--SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT-CEEEE---------------------
T ss_pred cccccccceEEeccCC--CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc-cceee---------------------
Confidence 3444556666777655 4589999999999 999999999999999987651 11100
Q ss_pred hhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEE
Q 001295 671 SAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLI 750 (1106)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 750 (1106)
.. .+|...|.+++
T Consensus 113 ---------------------------------------------------~~----------------~~h~~~v~~~~ 125 (383)
T 3ei3_B 113 ---------------------------------------------------QG----------------MGPGDAITGMK 125 (383)
T ss_dssp ---------------------------------------------------CC----------------CSTTCBEEEEE
T ss_pred ---------------------------------------------------ec----------------CCcCCceeEEE
Confidence 00 13778999999
Q ss_pred EcC-CCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe
Q 001295 751 FTN-SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 829 (1106)
Q Consensus 751 ~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s 829 (1106)
|+| +++.+++++.|+.|++||+.... .........+...|.+++|+|++++|++++
T Consensus 126 ~~~~~~~~l~s~~~d~~i~iwd~~~~~-----------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 182 (383)
T 3ei3_B 126 FNQFNTNQLFVSSIRGATTLRDFSGSV-----------------------IQVFAKTDSWDYWYCCVDVSVSRQMLATGD 182 (383)
T ss_dssp EETTEEEEEEEEETTTEEEEEETTSCE-----------------------EEEEECCCCSSCCEEEEEEETTTTEEEEEE
T ss_pred eCCCCCCEEEEEeCCCEEEEEECCCCc-----------------------eEEEeccCCCCCCeEEEEECCCCCEEEEEC
Confidence 999 78999999999999999976311 000011112568899999999999999999
Q ss_pred -CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCc-eEEEeeCCCcEEEEEeec----ceEEEEecCcccCeeEEEEe
Q 001295 830 -GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRV----DEVKSKLKGHSKRITGLAFS 903 (1106)
Q Consensus 830 -dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~-~la~g~~dg~v~iwd~~~----~~~~~~l~~h~~~V~~l~~s 903 (1106)
|+.|++||+ +++.+..+.+|...|.+++|+| +++ +|++|+.||.|++||+.+ +.++..+ +|...|++++|+
T Consensus 183 ~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s 259 (383)
T 3ei3_B 183 STGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFN 259 (383)
T ss_dssp TTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEEC
T ss_pred CCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEc
Confidence 899999999 5778888999999999999999 676 999999999999999998 6676666 699999999999
Q ss_pred c-CCCEEEEEcCCCcEEEEeCCCcccccceeeccc--CCCCC-------CCCCCceEEEcCCCcEEEEEeCCeEEEEecC
Q 001295 904 H-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP--TGRTP-------TAQSDTRVQFHQDQIHFLVVHETQLAIFETT 973 (1106)
Q Consensus 904 ~-d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~--~~~~~-------~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~ 973 (1106)
| ++.+|++++.|+.|++||+.+++.......... ..+.. ....+..++|+|||++ ..+.|+.|++||+.
T Consensus 260 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~ 338 (383)
T 3ei3_B 260 PTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDAN 338 (383)
T ss_dssp TTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETT
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecC
Confidence 9 999999999999999999998765432211110 01110 0012223555555555 22478999999999
Q ss_pred CceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001295 974 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus 974 ~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
+++++..+....|...+.+++|+||+++|++|+ ||.|+|||+++
T Consensus 339 ~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 339 SGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 999999887555778899999999999999997 99999999875
No 74
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=8.3e-34 Score=327.54 Aligned_cols=311 Identities=13% Similarity=0.128 Sum_probs=227.0
Q ss_pred cCCCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcC-CCCceEEEEecCCCcEEE
Q 001295 408 VKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKV 485 (1106)
Q Consensus 408 ~~~h~~~V~~l~~sp-dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~-d~~~~~l~s~~~d~~i~i 485 (1106)
..+|...|+||+|+| ++++||+|+.||+|+|||+.+++... ...+.+|.+.|++|+|+| ++. +|+||+.|++|++
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~-~~~~~gH~~~V~~l~f~p~~~~--~l~s~s~D~~v~i 191 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPT-FIKGIGAGGSITGLKFNPLNTN--QFYASSMEGTTRL 191 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCE-EECCCSSSCCCCEEEECSSCTT--EEEEECSSSCEEE
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCcee-EEEccCCCCCEEEEEEeCCCCC--EEEEEeCCCEEEE
Confidence 457888999999999 67899999999999999998876433 335678999999999998 566 8999999999999
Q ss_pred EeCCCCceeEEEeccC--CCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEe
Q 001295 486 WDATNGAKQYIFEGHE--APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 563 (1106)
Q Consensus 486 wd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~ 563 (1106)
||++++........|. ..+.+++|+ +++.+|++|+.||.|++||++. +.+..+..|...|.+++|+|++.
T Consensus 192 wd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~----- 263 (435)
T 4e54_B 192 QDFKGNILRVFASSDTINIWFCSLDVS--ASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCD----- 263 (435)
T ss_dssp EETTSCEEEEEECCSSCSCCCCCEEEE--TTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCS-----
T ss_pred eeccCCceeEEeccCCCCccEEEEEEC--CCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCc-----
Confidence 9998765544444333 446677765 4558999999999999999874 45556677777788877777764
Q ss_pred eeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEc-cCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 564 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 564 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
.++++++.|+.|++||+.+++....+. ...|...|.+++|+|+|++|++++.||.|++||+.++
T Consensus 264 ---------------~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~ 328 (435)
T 4e54_B 264 ---------------WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW 328 (435)
T ss_dssp ---------------SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS
T ss_pred ---------------eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC
Confidence 257889999999999998876554432 2234568999999999999999999999999999877
Q ss_pred chhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEe
Q 001295 643 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 722 (1106)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~ 722 (1106)
.....+..|.....
T Consensus 329 -~~~~~~~~~~~~~~----------------------------------------------------------------- 342 (435)
T 4e54_B 329 -DCPLGLIPHPHRHF----------------------------------------------------------------- 342 (435)
T ss_dssp -SSEEEECCCCCCCC-----------------------------------------------------------------
T ss_pred -ccceEEeccccccc-----------------------------------------------------------------
Confidence 22222222111000
Q ss_pred cCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccc
Q 001295 723 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 802 (1106)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 802 (1106)
....+....|+|++..+++
T Consensus 343 -------------------~~~~~~~~~~~~~~~~~~~------------------------------------------ 361 (435)
T 4e54_B 343 -------------------QHLTPIKAAWHPRYNLIVV------------------------------------------ 361 (435)
T ss_dssp -------------------SSSCCCBCEECSSSSCEEE------------------------------------------
T ss_pred -------------------ccceeEEEEEcCCCCEEEE------------------------------------------
Confidence 0011122344455444433
Q ss_pred ccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCCceeeeec-CCCCCeeEE-EEecCCCceEEEeeCCCcEEE
Q 001295 803 DVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFM-PPPPAATFL-AFHPQDNNIIAIGMDDSSIQI 878 (1106)
Q Consensus 803 ~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~-~~~~~v~~l-~~s~~d~~~la~g~~dg~v~i 878 (1106)
++++++..++++. ++.|++||..+++.+..+. +|...|.++ +|+| ++++||+|+ |+.|+|
T Consensus 362 --------------~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fsp-dg~~lasg~-d~~i~i 425 (435)
T 4e54_B 362 --------------GRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP-MGDTLASAM-GYHILI 425 (435)
T ss_dssp --------------ECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECT-TSSCEEEEC-SSEEEE
T ss_pred --------------EEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECC-CCCEEEEEc-CCcEEE
Confidence 3334444444443 4679999999999888764 677788887 6999 899999886 789999
Q ss_pred EEeecceEE
Q 001295 879 YNVRVDEVK 887 (1106)
Q Consensus 879 wd~~~~~~~ 887 (1106)
|++++++..
T Consensus 426 W~~~~gk~r 434 (435)
T 4e54_B 426 WSQQEARTR 434 (435)
T ss_dssp CCCC-----
T ss_pred EECCcCeee
Confidence 999988753
No 75
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.8e-32 Score=308.28 Aligned_cols=322 Identities=14% Similarity=0.197 Sum_probs=238.4
Q ss_pred ccCCCCcCeEEEEEccCCCEEE-EEeC---CCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCC---CCceEEEEecC
Q 001295 407 LVKDPGVSVNRVIWSPDGSLFG-VAYS---RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP---NKQLCVITCGD 479 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~spdg~~la-s~~~---d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d---~~~~~l~s~~~ 479 (1106)
++.+|...|.+++|+|++..++ +|+. |+.|+|||+.+++.... ...+|...|.+++|+|+ +. +|++|+.
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~~ 88 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGDF 88 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEET
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEecC
Confidence 5678999999999999997655 5555 89999999998875432 23379999999999999 57 7999999
Q ss_pred CCcEEEEeCCCCc-eeEEEeccCCCeEEEeccc----cCCceEEEEEecCCeEEEEeCCCCC-ceeEeeCCCC----eeE
Q 001295 480 DKTIKVWDATNGA-KQYIFEGHEAPVYSVCPHH----KENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGR----WCT 549 (1106)
Q Consensus 480 d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~~----~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~----~v~ 549 (1106)
|+.|++||+.+++ .+..+.+|...|.+++|.+ ++++.+|++++.||.|++||+++.. ....+..+.. .+.
T Consensus 89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~ 168 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW 168 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence 9999999999988 8999999999999997643 4667899999999999999999876 4555544333 444
Q ss_pred EEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEcc---CCCEEE
Q 001295 550 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK---DGCLLA 626 (1106)
Q Consensus 550 ~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~ 626 (1106)
+++|.+ +|+|+++++++++.|+.|++||+.+++...... + ...|.+++|+| ++.+++
T Consensus 169 ~~~~~~-----------------~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~--~~~v~~~~~~~~~~~~~~l~ 228 (357)
T 3i2n_A 169 TVAFGN-----------------AYNQEERVVCAGYDNGDIKLFDLRNMALRWETN-I--KNGVCSLEFDRKDISMNKLV 228 (357)
T ss_dssp EEEEEC-----------------CCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE-C--SSCEEEEEESCSSSSCCEEE
T ss_pred EEEEEe-----------------ccCCCCCEEEEEccCCeEEEEECccCceeeecC-C--CCceEEEEcCCCCCCCCEEE
Confidence 444311 256677799999999999999999988765543 2 34699999999 999999
Q ss_pred EEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCC
Q 001295 627 VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADV 706 (1106)
Q Consensus 627 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (1106)
+++.||.|++||+.++ .....+..
T Consensus 229 ~~~~dg~i~i~d~~~~-~~~~~~~~------------------------------------------------------- 252 (357)
T 3i2n_A 229 ATSLEGKFHVFDMRTQ-HPTKGFAS------------------------------------------------------- 252 (357)
T ss_dssp EEESTTEEEEEEEEEE-ETTTEEEE-------------------------------------------------------
T ss_pred EECCCCeEEEEeCcCC-Ccccceee-------------------------------------------------------
Confidence 9999999999998765 22111100
Q ss_pred CccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCc-eEEEeecCceEEEeeccccccCCCCcccc
Q 001295 707 KPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATA 785 (1106)
Q Consensus 707 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 785 (1106)
... .+|...|.+++|+|+++ ++++++.||.|++|++...
T Consensus 253 --------------~~~----------------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---------- 292 (357)
T 3i2n_A 253 --------------VSE----------------KAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP---------- 292 (357)
T ss_dssp --------------EEE----------------ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC----------
T ss_pred --------------ecc----------------CCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC----------
Confidence 000 12667788888888887 7888888888888886521
Q ss_pred ccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCc
Q 001295 786 SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 865 (1106)
Q Consensus 786 ~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~ 865 (1106)
.... .+.+++..... .+ +.+.+..+.+|...|++++|+| +++
T Consensus 293 ------------~~~~---------------~~~~~g~~~~~--~~--------~~~~~~~~~~~~~~v~~~~~s~-~~~ 334 (357)
T 3i2n_A 293 ------------IQRS---------------KKDSEGIEMGV--AG--------SVSLLQNVTLSTQPISSLDWSP-DKR 334 (357)
T ss_dssp ------------SCC-----------------CCTTSCCCCC--CC--------EEEEEEEEECCSSCEEEEEECS-SST
T ss_pred ------------cccc---------------cccCCCCcccc--cc--------ccceeeccccCCCCeeEEEEcC-CCC
Confidence 0000 01111111100 11 1245567788999999999999 788
Q ss_pred eEE-EeeCCCcEEEEEeecceE
Q 001295 866 IIA-IGMDDSSIQIYNVRVDEV 886 (1106)
Q Consensus 866 ~la-~g~~dg~v~iwd~~~~~~ 886 (1106)
+|+ +|+.||.|++||+.+.+.
T Consensus 335 ~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 335 GLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp TEEEEEETTSEEEEEEECC---
T ss_pred eEEEEecCCCcEEEEECCCccc
Confidence 887 899999999999987654
No 76
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.6e-32 Score=309.80 Aligned_cols=310 Identities=17% Similarity=0.246 Sum_probs=239.1
Q ss_pred cCCCCcEEEEEecC---CCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC-
Q 001295 348 NQGSSPMSMDFHPV---QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD- 423 (1106)
Q Consensus 348 ~h~~~v~~~~~sp~---g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd- 423 (1106)
+|.+.|++++|+|+ +..++++++.++.|+|||+.+++.+....- .....|...|.+++|+|+
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~--------------~~~~~~~~~v~~~~~~~~~ 81 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS--------------YVDADADENFYTCAWTYDS 81 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEE--------------EECSCTTCCEEEEEEEECT
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeee--------------ccccCCCCcEEEEEeccCC
Confidence 59999999999985 444566667778999999998876643110 012357889999999999
Q ss_pred ---CCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcC-CCCceEEEEecCCCcEEEEeCCCCceeEEE--
Q 001295 424 ---GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIF-- 497 (1106)
Q Consensus 424 ---g~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-- 497 (1106)
|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| ++. +|++|+.|+.|++||+.+++.+..+
T Consensus 82 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 82 NTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp TTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred CCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEecc
Confidence 6799999999999999999987665 5778999999999999 777 8999999999999999999999998
Q ss_pred -eccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCC-------------eEEEe
Q 001295 498 -EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-------------RTYQG 563 (1106)
Q Consensus 498 -~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-------------~~~~~ 563 (1106)
.+|...|.+++|++ ++.+|++++.||.|++||+++......+.. .+.+++++. .....
T Consensus 157 ~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (366)
T 3k26_A 157 VEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKE------SYDYNPNKTNRPFISQKIHFPDFSTRD 228 (366)
T ss_dssp TTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHH------HHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred cccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccce------eEEecCCCCcccccceeeccCcccccc
Confidence 78999999999876 457999999999999999987554332221 001111111 00011
Q ss_pred eeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcce--------------eEEEccCCCCCCcCeEEEccC--CCEEEE
Q 001295 564 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--------------LTSIDADGGLPASPRIRFNKD--GCLLAV 627 (1106)
Q Consensus 564 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~v~~s~~--~~~l~~ 627 (1106)
.+...+.+++|+ ++++++++.|+.|++||+.+++. +..+..+ ...|.+++|+|+ +++|++
T Consensus 229 ~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~ 304 (366)
T 3k26_A 229 IHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSMDFWQKMLAL 304 (366)
T ss_dssp SCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEECTTSSEEEE
T ss_pred CCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcCCCCCcEEEE
Confidence 133466667776 56899999999999999987654 6666655 447999999999 999999
Q ss_pred EeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCC
Q 001295 628 STNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK 707 (1106)
Q Consensus 628 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (1106)
|+.||.|++||+.++. ......
T Consensus 305 ~~~dg~i~vwd~~~~~-~~~~~~--------------------------------------------------------- 326 (366)
T 3k26_A 305 GNQVGKLYVWDLEVED-PHKAKC--------------------------------------------------------- 326 (366)
T ss_dssp ECTTSCEEEEECCSSS-GGGCEE---------------------------------------------------------
T ss_pred EecCCcEEEEECCCCC-Cccccc---------------------------------------------------------
Confidence 9999999999998762 211000
Q ss_pred ccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeecc
Q 001295 708 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ 773 (1106)
Q Consensus 708 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~ 773 (1106)
. .+....+...|.+++|+|++++|++++.||.|++||+.
T Consensus 327 -----------~----------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 327 -----------T----------------TLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp -----------E----------------EECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred -----------e----------------EEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 0 00001136889999999999999999999999999974
No 77
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.8e-32 Score=310.25 Aligned_cols=244 Identities=13% Similarity=0.114 Sum_probs=204.8
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcc--eeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCE
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 426 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 426 (1106)
|.+.|++++|+|+|+ +|++|+.|+.|+|||+.+++ .+. .+.+|...|.+++|+|++++
T Consensus 7 ~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 7 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVH-------------------ELKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEE-------------------EEECCSSCEEEEEEETTTTE
T ss_pred cCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeee-------------------eecCCCCcccEEEEeCCCCE
Confidence 889999999999999 49999999999999999876 333 36789999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCce---eE-EEeccCC
Q 001295 427 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK---QY-IFEGHEA 502 (1106)
Q Consensus 427 las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~~-~~~~h~~ 502 (1106)
|++++.|+.|++||+.+++... ...+.+|...|.+++|+|+++ +|++++.|+.|++||+.++.. .. ...+|..
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred EEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence 9999999999999999876443 224578999999999999999 899999999999999998773 33 3367899
Q ss_pred CeEEEeccccCCceEEEEEecCCeEEEEeCCC------------------CCceeEeeCCCCeeEEEEEecCCCeEEEee
Q 001295 503 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDN------------------LGSRVDYEAPGRWCTTMAYSADGTRTYQGF 564 (1106)
Q Consensus 503 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~ 564 (1106)
.|.+++|++ ++.+|++++.||.|++||++. ......+..+...
T Consensus 144 ~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 204 (372)
T 1k8k_C 144 TVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW----------------- 204 (372)
T ss_dssp CEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC-----------------
T ss_pred CeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCe-----------------
Confidence 999999876 447999999999999999752 2333334344444
Q ss_pred eccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccC
Q 001295 565 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 641 (1106)
Q Consensus 565 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 641 (1106)
+.+++|+|++++|++++.|+.|++||+.+++.+..+..+. ..|.+++|+|++.++++| .|+.|++|++.+
T Consensus 205 ----v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 205 ----VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET--LPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp ----EEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS--CCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred ----EEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCC--CCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 4455555555689999999999999999999999998664 479999999999998888 899999999987
No 78
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.2e-32 Score=314.63 Aligned_cols=253 Identities=11% Similarity=0.101 Sum_probs=209.9
Q ss_pred eec-cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcc------eeEEeeeeeeccCcCCccccccccCCCCcCeEE
Q 001295 345 RTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE------RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 417 (1106)
Q Consensus 345 ~~~-~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~ 417 (1106)
..+ +|.+.|++++|+| + +|++|+.||.|+|||+.+++ .+. .+.+|...|.+
T Consensus 10 ~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~ 67 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKSY-------------------SHFVHKSGLHH 67 (397)
T ss_dssp EESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGEE-------------------EEECCTTCEEE
T ss_pred hhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCCcce-------------------EEecCCCcEEE
Confidence 344 4999999999999 5 59999999999999999877 232 35789999999
Q ss_pred EEEccC----C---CEEEEEeCCCeEEEEEccCCce-----eeeeeeeccc-----cCCeeEEEEc----CCCCceE-EE
Q 001295 418 VIWSPD----G---SLFGVAYSRHIVQIYSYHGGDE-----VRQHLEIDAH-----VGGVNDIAFS----HPNKQLC-VI 475 (1106)
Q Consensus 418 l~~spd----g---~~las~~~d~~v~iwd~~~~~~-----~~~~~~l~~h-----~~~V~~~~~s----~d~~~~~-l~ 475 (1106)
++|+|+ | ++|++++.|+.|++||+.+++. +. .+.+| ...|.+++|+ |+++ + |+
T Consensus 68 ~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~ 142 (397)
T 1sq9_A 68 VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFE---KLDLLDSDMKKHSFWALKWGASNDRLLS--HRLV 142 (397)
T ss_dssp EEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE---EECCSCTTGGGSCEEEEEEECCC----C--EEEE
T ss_pred EEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccce---eecccccccCCCcEEEEEEeeccCCCCc--eEEE
Confidence 999999 9 9999999999999999998875 43 56777 6999999999 9999 7 99
Q ss_pred EecCCCcEEEEeCCC------CceeE-----EEe-------ccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCc
Q 001295 476 TCGDDKTIKVWDATN------GAKQY-----IFE-------GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS 537 (1106)
Q Consensus 476 s~~~d~~i~iwd~~~------~~~~~-----~~~-------~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 537 (1106)
+++.|+.|++||+.+ ++.+. .+. .|...|.+++|++ ++ ++++++.||.|++||+++...
T Consensus 143 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~ 219 (397)
T 1sq9_A 143 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRP 219 (397)
T ss_dssp EEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEE
T ss_pred EEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCce
Confidence 999999999999998 77776 774 4889999999865 45 899999999999999998777
Q ss_pred eeEeeC---C---CCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECC---CeEEEEECCCcceeEEEccCC
Q 001295 538 RVDYEA---P---GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLLTSIDADG 608 (1106)
Q Consensus 538 ~~~~~~---~---~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~ 608 (1106)
...+.. | ...+.+++|+|++ .+|++++.| +.|++||+.+++.+..+....
T Consensus 220 ~~~~~~~~~h~~~~~~i~~i~~~~~~---------------------~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~ 278 (397)
T 1sq9_A 220 LYNFESQHSMINNSNSIRSVKFSPQG---------------------SLLAIAHDSNSFGCITLYETEFGERIGSLSVPT 278 (397)
T ss_dssp EEEEECCC---CCCCCEEEEEECSST---------------------TEEEEEEEETTEEEEEEEETTTCCEEEEECBC-
T ss_pred eEEEeccccccccCCccceEEECCCC---------------------CEEEEEecCCCCceEEEEECCCCcccceeccCc
Confidence 666666 5 5555555555554 589999999 999999999999999987610
Q ss_pred -----------CCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhh
Q 001295 609 -----------GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649 (1106)
Q Consensus 609 -----------~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 649 (1106)
+...|.+++|+|++++|++++.||.|++||+.++ +.+..+
T Consensus 279 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~ 329 (397)
T 1sq9_A 279 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTL 329 (397)
T ss_dssp -------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEE
T ss_pred ccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceeEEE
Confidence 2457999999999999999999999999999887 444433
No 79
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.5e-32 Score=310.96 Aligned_cols=324 Identities=12% Similarity=0.133 Sum_probs=239.6
Q ss_pred cCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEe
Q 001295 408 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 487 (1106)
Q Consensus 408 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd 487 (1106)
+..|.++|.+++|+|++++||+++.|+.|++||+.+++ ......+.+|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence 45689999999999999999999999999999999876 123336789999999999999999 899999999999999
Q ss_pred CCCCceeEE--EeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCcee---E-eeCCCCeeEEEEEecCCCeEE
Q 001295 488 ATNGAKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV---D-YEAPGRWCTTMAYSADGTRTY 561 (1106)
Q Consensus 488 ~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~-~~~~~~~v~~~~~s~~~~~~~ 561 (1106)
+.+++.... +..|...|.+++|+++ +.+|++++.|+.|++||++...... . ...+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~-------------- 144 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAPN--EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRST-------------- 144 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECTT--SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSC--------------
T ss_pred CCCCeeeeeEEeecCCCceeEEEECCC--CCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCC--------------
Confidence 998876544 4679999999998754 5799999999999999998766421 1 1233344
Q ss_pred EeeeccceeEEEEcCCCCEEEEEECCCeEEEEEC------------------CCcceeEEEccCCCCCCcCeEEEccCCC
Q 001295 562 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM------------------DSVQLLTSIDADGGLPASPRIRFNKDGC 623 (1106)
Q Consensus 562 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~------------------~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 623 (1106)
+.+++|+|+++++++++.|+.|++||+ ..++.+..+..+ ...|.+++|+|+++
T Consensus 145 -------i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~ 215 (372)
T 1k8k_C 145 -------VLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS--CGWVHGVCFSANGS 215 (372)
T ss_dssp -------EEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC--SSCEEEEEECSSSS
T ss_pred -------eeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC--CCeEEEEEECCCCC
Confidence 445555555568999999999999995 467777777755 44799999999999
Q ss_pred EEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCcccc
Q 001295 624 LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSL 703 (1106)
Q Consensus 624 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1106)
+|++++.||.|++||+.++ +.+..+.
T Consensus 216 ~l~~~~~d~~i~i~d~~~~-~~~~~~~----------------------------------------------------- 241 (372)
T 1k8k_C 216 RVAWVSHDSTVCLADADKK-MAVATLA----------------------------------------------------- 241 (372)
T ss_dssp EEEEEETTTEEEEEEGGGT-TEEEEEE-----------------------------------------------------
T ss_pred EEEEEeCCCEEEEEECCCC-ceeEEEc-----------------------------------------------------
Confidence 9999999999999999766 2221111
Q ss_pred CCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCcc
Q 001295 704 ADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKA 783 (1106)
Q Consensus 704 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 783 (1106)
.|...|.+++|+|++.+++++ .|+.+++|++...
T Consensus 242 -------------------------------------~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~-------- 275 (372)
T 1k8k_C 242 -------------------------------------SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSA-------- 275 (372)
T ss_dssp -------------------------------------CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETT--------
T ss_pred -------------------------------------cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCc--------
Confidence 155678999999999877666 8899999987520
Q ss_pred ccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEE---EcCCCce------eeeecCCCCCe
Q 001295 784 TASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLF---NMMTFKT------MATFMPPPPAA 854 (1106)
Q Consensus 784 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vw---d~~~~~~------~~~~~~~~~~v 854 (1106)
.+..... +.-.. ...-..+....+++| +...... .....+|...|
T Consensus 276 ------------~~~~~~~------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 329 (372)
T 1k8k_C 276 ------------AGKLSFG------GRLDV--------PKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSV 329 (372)
T ss_dssp ------------TTEEEEC------CCCCC--------C--------CHHHHHHHCCCCC---------CCCSSSSSSCE
T ss_pred ------------CceEEEe------eccCc--------cccchhhhcchhhhhhhcccccccccCccccccccccccCCc
Confidence 0211110 00000 000011123445666 4332221 22234899999
Q ss_pred eEEEEecCCC---ceEEEeeCCCcEEEEEeecce
Q 001295 855 TFLAFHPQDN---NIIAIGMDDSSIQIYNVRVDE 885 (1106)
Q Consensus 855 ~~l~~s~~d~---~~la~g~~dg~v~iwd~~~~~ 885 (1106)
++++|++.++ .+|++|+.||.|++||+.+++
T Consensus 330 ~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 330 SQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp EEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 9999775477 999999999999999998754
No 80
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-34 Score=319.64 Aligned_cols=327 Identities=12% Similarity=0.108 Sum_probs=244.8
Q ss_pred cccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCC
Q 001295 455 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 534 (1106)
Q Consensus 455 ~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 534 (1106)
.-...|.+++|+|||+ ++||++.|++|+ |...++.+ .+|...|.+++|+|++ .++.+.+|+
T Consensus 13 ~~~~~v~sv~~SpDG~--~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg---------~~~~~~~~~--- 73 (588)
T 2j04_A 13 EFEDWKNNLTWARDGT--LYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE---------FENKLDFEL--- 73 (588)
T ss_dssp CCSSSSCCEEECTTSC--EEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC---------CCCTTTTSC---
T ss_pred HhhccEEEEEECCCCC--EEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC---------CcceEEEEe---
Confidence 3457899999999999 899999999999 76666554 7999999999987644 345444444
Q ss_pred CCceeEee-CCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCC---C
Q 001295 535 LGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG---L 610 (1106)
Q Consensus 535 ~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~ 610 (1106)
.+....+. .+...|.+++|+|+|+ +|++++.||.|++||... ++..+. +.. .
T Consensus 74 ~~~~~~~~~~~~~~V~~vawSPdG~---------------------~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~ 129 (588)
T 2j04_A 74 AQQNGLLNSQPVCYPRVCKPSPIDD---------------------WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSS 129 (588)
T ss_dssp CCSSCSSTTSCSCCEEEEEECSSSS---------------------CEEEEETTSCEEEEETTE--EEEECC-CSSCSTT
T ss_pred CCCceEeecCCCCcEEEEEECCCCC---------------------EEEEEeCCCcEEEEeCCc--eeeecc-CCCcccc
Confidence 33222222 2345566666666555 799999999999999644 555555 321 1
Q ss_pred CCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccc
Q 001295 611 PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM 690 (1106)
Q Consensus 611 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1106)
..+.+++|||||++|++|+.||+|++||+.++. .... .|
T Consensus 130 ~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~-l~~~-----------------~~----------------------- 168 (588)
T 2j04_A 130 RTYHCFEWNPIESSIVVGNEDGELQFFSIRKNS-ENTP-----------------EF----------------------- 168 (588)
T ss_dssp TCEEEEEECSSSSCEEEEETTSEEEEEECCCCT-TTCC-----------------CC-----------------------
T ss_pred ccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCc-cccc-----------------cc-----------------------
Confidence 258999999999999999999999999987651 0000 00
Q ss_pred cccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEe
Q 001295 691 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW 770 (1106)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw 770 (1106)
+. +..+
T Consensus 169 -------------------------------------------------------------------i~-------l~ti 174 (588)
T 2j04_A 169 -------------------------------------------------------------------YF-------ESSI 174 (588)
T ss_dssp -------------------------------------------------------------------EE-------EEEE
T ss_pred -------------------------------------------------------------------ee-------eeee
Confidence 00 0000
Q ss_pred eccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCce---eeee
Q 001295 771 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKT---MATF 847 (1106)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~---~~~~ 847 (1106)
.. .. .+|...|.+++|+||| +++++.|++|++||+.++.. .+++
T Consensus 175 ~~------------------------------~~--~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL 221 (588)
T 2j04_A 175 RL------------------------------SD--AGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMI 221 (588)
T ss_dssp EC------------------------------SC--TTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEE
T ss_pred ec------------------------------cc--ccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeee
Confidence 00 00 1277889999999999 44444499999999988774 2456
Q ss_pred -cCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEE--ecCCCEEEEEcCCCcEEEEeCC
Q 001295 848 -MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF--SHALNVLVSSGADSQLCVWSSD 924 (1106)
Q Consensus 848 -~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~--s~d~~~l~s~s~Dg~i~vwd~~ 924 (1106)
.+|...|.+++|+ +++||+++ +++|++||+.+++......+|.+.|.+++| +||+..|+++++||+ ++|..+
T Consensus 222 ~~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 222 QNASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp ECCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred cccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 4788899999999 37888887 699999999988874444489999999999 999999999999999 999876
Q ss_pred CcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEE
Q 001295 925 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYA 1004 (1106)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t 1004 (1106)
. ++|+||+..++.. |+++++|+..... ...+ .+...|++++|||||+.+|+
T Consensus 297 ~------------------------~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~~---~~~~~I~~va~SPdG~~lA~ 347 (588)
T 2j04_A 297 E------------------------LHVTADNIIAPYL-EKKFKKWSTIWNE-FNNY---ETTLVIHGISLSPDGYSIAI 347 (588)
T ss_dssp S------------------------EEEECCCSSHHHH-HHHHHHTTTTTTS-SSSS---CCEEEEEEEEECTTSSEEEE
T ss_pred c------------------------EEECCCceEEEEc-CCEEEEEECCCCc-eeee---ccceEEEEEEECCCCCEEEE
Confidence 2 5589999887775 9999999986554 3332 23667999999999999999
Q ss_pred EE
Q 001295 1005 CF 1006 (1106)
Q Consensus 1005 ~s 1006 (1106)
++
T Consensus 348 ~~ 349 (588)
T 2j04_A 348 VY 349 (588)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 81
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-32 Score=297.42 Aligned_cols=246 Identities=18% Similarity=0.252 Sum_probs=208.1
Q ss_pred ceeeecc-CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEE
Q 001295 342 TVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 420 (1106)
Q Consensus 342 ~~~~~~~-h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 420 (1106)
+....+. |.+.|++++| |++++ |++|+.||.|+|||+.+++.... +..|...|.+++|
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~-l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~~~~v~~~~~ 67 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSK-VASVSRDGTVRLWSKDDQWLGTV-------------------VYTGQGFLNSVCY 67 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTE-EEEEETTSEEEEEEESSSEEEEE-------------------EEECSSCEEEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCE-EEEEEcCCcEEEEECCCCEEEEE-------------------eecCCccEEEEEE
Confidence 4445554 9999999999 99995 99999999999999988776553 5678999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEecc
Q 001295 421 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 500 (1106)
Q Consensus 421 spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 500 (1106)
+|++++|++++.|+.|++|++...........+.+|...|.+++| ++. ++++++.|+.|++|| .++.+..+..|
T Consensus 68 ~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~~~ 141 (313)
T 3odt_A 68 DSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQAH 141 (313)
T ss_dssp ETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEECC
T ss_pred CCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEecccC
Confidence 999999999999999999999876544455578899999999999 456 799999999999999 78888999999
Q ss_pred CCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeC-CCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCC
Q 001295 501 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 579 (1106)
Q Consensus 501 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~ 579 (1106)
...+.+++|.+. ++.++++++.||.|++||. ......+.. +...+.+++|++++.
T Consensus 142 ~~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~--------------------- 197 (313)
T 3odt_A 142 NASVWDAKVVSF-SENKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH--------------------- 197 (313)
T ss_dssp SSCEEEEEEEET-TTTEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE---------------------
T ss_pred CCceeEEEEccC-CCCEEEEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe---------------------
Confidence 999999998763 3478999999999999993 334444444 556666666666654
Q ss_pred EEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 580 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 580 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
+++++.|+.|++||+.+++.+..+..+. ..|.+++|+|++ .|++++.||.|++||+.++
T Consensus 198 -~~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 198 -FISCSNDGLIKLVDMHTGDVLRTYEGHE--SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENG 256 (313)
T ss_dssp -EEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECTTS-CEEEEETTSEEEEECTTTC
T ss_pred -EEEccCCCeEEEEECCchhhhhhhhcCC--ceEEEEEEecCC-CEEEEecCCEEEEEECCCC
Confidence 8999999999999999999999998664 479999999999 5889999999999998776
No 82
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=8.5e-33 Score=309.76 Aligned_cols=294 Identities=12% Similarity=0.153 Sum_probs=216.1
Q ss_pred cCCeeEEEEcCCCCceEEEEecCCC-------cEEEEeCCCCcee----------EEEeccCCCeEEEeccccCCceEEE
Q 001295 457 VGGVNDIAFSHPNKQLCVITCGDDK-------TIKVWDATNGAKQ----------YIFEGHEAPVYSVCPHHKENIQFIF 519 (1106)
Q Consensus 457 ~~~V~~~~~s~d~~~~~l~s~~~d~-------~i~iwd~~~~~~~----------~~~~~h~~~v~~~~~~~~~~~~~l~ 519 (1106)
..+|++++|+||++ +|++||.|. .|++|++..+... ..+.+|...|.++++. . ..++
T Consensus 14 g~PV~sv~fs~dg~--~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~--~~~~ 87 (365)
T 4h5i_A 14 GYPAYGAKFLNNDT--LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--K--GIIL 87 (365)
T ss_dssp SSCEEEEEEEETTE--EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--T--TEEE
T ss_pred CCCEEEEEEeCCCc--EEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--C--CEEE
Confidence 45899999999999 899987543 5999998765321 2456777888877643 3 4677
Q ss_pred EEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcc
Q 001295 520 STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 599 (1106)
Q Consensus 520 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 599 (1106)
+|+.++..++| +++.|+.+++|++....
T Consensus 88 ~g~~~~~~~l~----------------------------------------------------s~~~d~~~r~~~~~~~~ 115 (365)
T 4h5i_A 88 VGCNENSTKIT----------------------------------------------------QGKGNKHLRKFKYDKVN 115 (365)
T ss_dssp EECCCCHHHHH----------------------------------------------------HTSCCCCEEEEEEETTT
T ss_pred EEECCCccEEE----------------------------------------------------EecCCCcEEEEEecCCC
Confidence 76655544333 23345556666654432
Q ss_pred ee----EEEc---cCCCCCCcCeEEEccCCCEEEEEe--CCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCch
Q 001295 600 LL----TSID---ADGGLPASPRIRFNKDGCLLAVST--NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPI 670 (1106)
Q Consensus 600 ~~----~~~~---~~~~~~~v~~v~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1106)
.. .... .......+.+++|+|||+++++++ .|++|+|||+.++. ....+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~-~~~~~--------------------- 173 (365)
T 4h5i_A 116 DQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT-EKFEI--------------------- 173 (365)
T ss_dssp TEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE-EEEEE---------------------
T ss_pred ceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc-EEEEe---------------------
Confidence 11 1111 112233577899999999987655 68999999987762 11111
Q ss_pred hhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEE
Q 001295 671 SAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLI 750 (1106)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 750 (1106)
.|...|.+++
T Consensus 174 ----------------------------------------------------------------------~~~~~V~~v~ 183 (365)
T 4h5i_A 174 ----------------------------------------------------------------------ETRGEVKDLH 183 (365)
T ss_dssp ----------------------------------------------------------------------ECSSCCCEEE
T ss_pred ----------------------------------------------------------------------CCCCceEEEE
Confidence 1456789999
Q ss_pred EcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcc-ccccCCCCCCCCeeEEEEecCCCEEEEEe
Q 001295 751 FTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM-TNDVTDSNPEEAVPCFALSKNDSYVMSAS 829 (1106)
Q Consensus 751 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~~~v~~l~~s~~~~~l~~~s 829 (1106)
|+|+|+++++++.++.+.+|. . ++... .... ..|...|.+++|+|+++++++++
T Consensus 184 fspdg~~l~s~s~~~~~~~~~-~----------------------~~~~~~~~~~--~~~~~~v~~v~fspdg~~l~~~s 238 (365)
T 4h5i_A 184 FSTDGKVVAYITGSSLEVIST-V----------------------TGSCIARKTD--FDKNWSLSKINFIADDTVLIAAS 238 (365)
T ss_dssp ECTTSSEEEEECSSCEEEEET-T----------------------TCCEEEEECC--CCTTEEEEEEEEEETTEEEEEEE
T ss_pred EccCCceEEeccceeEEEEEe-c----------------------cCcceeeeec--CCCCCCEEEEEEcCCCCEEEEEe
Confidence 999999998888665544443 2 22211 1112 23788899999999999999998
Q ss_pred -CC----eEEEEEcCCCce----eeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEe-cCcccCeeE
Q 001295 830 -GG----KISLFNMMTFKT----MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRITG 899 (1106)
Q Consensus 830 -dg----~i~vwd~~~~~~----~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l-~~h~~~V~~ 899 (1106)
|+ .+++|++..... ...+.+|...|++++|+| ++++||+|+.|++|+|||+.+++++..+ .+|...|++
T Consensus 239 ~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~ 317 (365)
T 4h5i_A 239 LKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITE 317 (365)
T ss_dssp ESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEE
T ss_pred cCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEE
Confidence 65 588899876543 345778999999999999 9999999999999999999999999875 799999999
Q ss_pred EEEecCCCEEEEEcCCCcEEEEeCCCc
Q 001295 900 LAFSHALNVLVSSGADSQLCVWSSDGW 926 (1106)
Q Consensus 900 l~~s~d~~~l~s~s~Dg~i~vwd~~~~ 926 (1106)
|+|||||++|||||.|++|+||++...
T Consensus 318 v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 318 VTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999999999999999753
No 83
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-33 Score=319.96 Aligned_cols=257 Identities=14% Similarity=0.119 Sum_probs=194.9
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCc--ceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCE
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 426 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 426 (1106)
|.+.|++++|+|+|+ +||+|+.||.|+|||+.++ +.+. .+.+|...|.+++|+|++++
T Consensus 10 ~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHAR-------------------TFSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp CSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECC-------------------CBCCCSSCEEEEEECTTTCC
T ss_pred CCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEE-------------------EEecCCceEEEEEEeCCCCE
Confidence 678999999999999 4999999999999999877 3332 36899999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCc---eeEEEec-cCC
Q 001295 427 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA---KQYIFEG-HEA 502 (1106)
Q Consensus 427 las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~-h~~ 502 (1106)
|++++.|++|++||+.+++.......+.+|...|.+++|+|+++ +|++++.|+.|++||+++++ ....+.+ |..
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 99999999999999998873334446788999999999999999 79999999999999999887 4788888 999
Q ss_pred CeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCC--CC--eeEEEEEecCCCeEEEeeeccceeEEEEcCCC
Q 001295 503 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP--GR--WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 578 (1106)
Q Consensus 503 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~--~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~ 578 (1106)
.|.+++|++ ++.+|++++.|+.|++||+............ .. ....+. ..+ .+...+.+++|+|++
T Consensus 148 ~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~v~~~~~sp~~ 217 (377)
T 3dwl_C 148 TILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVC------AEY--PSGGWVHAVGFSPSG 217 (377)
T ss_dssp CEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEE------ECC--CCSSSEEEEEECTTS
T ss_pred CeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhh------hcc--cCCceEEEEEECCCC
Confidence 999999876 4579999999999999998643311100000 00 000000 000 223356677777777
Q ss_pred CEEEEEECCCeEEEEECCCcce----eEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEcc
Q 001295 579 NRFLAAGDDFSIKFWDMDSVQL----LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 640 (1106)
Q Consensus 579 ~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 640 (1106)
++|++++.|+.|++||+.+++. +..+..+ ...|.+++|+|++++|++++.++.+ +|+..
T Consensus 218 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 218 NALAYAGHDSSVTIAYPSAPEQPPRALITVKLS--QLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp SCEEEEETTTEEC-CEECSTTSCEEECCCEECS--SSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CEEEEEeCCCcEEEEECCCCCCcceeeEeecCC--CCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 7999999999999999999887 6666655 4479999999999999999876666 66554
No 84
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-34 Score=317.61 Aligned_cols=314 Identities=8% Similarity=0.008 Sum_probs=229.5
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 428 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 428 (1106)
-...|.+++|||||+ ++|+++.|++|+ |...++. +.+|...|.+++|+|+|
T Consensus 14 ~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg---- 64 (588)
T 2j04_A 14 FEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE---- 64 (588)
T ss_dssp CSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC----
T ss_pred hhccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC----
Confidence 358999999999999 599999999999 6544432 47899999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCC-----C
Q 001295 429 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA-----P 503 (1106)
Q Consensus 429 s~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~-----~ 503 (1106)
.++.+.+|+......+ .+ .|...|.+++|||||+ .|++++.||.|++||.+. ++..+. |.. .
T Consensus 65 ---~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~s 131 (588)
T 2j04_A 65 ---FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRT 131 (588)
T ss_dssp ---CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTC
T ss_pred ---CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCcccccc
Confidence 4565555554432211 12 5688999999999999 799999999999999544 667777 766 4
Q ss_pred eEEEeccccCCceEEEEEecCCeEEEEeCCCCCc-------eeEe----eCCCCeeEEEEEecCCCeEEEeeeccceeEE
Q 001295 504 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-------RVDY----EAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 572 (1106)
Q Consensus 504 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~----~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~ 572 (1106)
|.+++|+| +|++|++|+.||+|++||+..+.. ...+ .+|..+|.+ +
T Consensus 132 v~svafSP--DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~s---------------------V 188 (588)
T 2j04_A 132 YHCFEWNP--IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTH---------------------I 188 (588)
T ss_dssp EEEEEECS--SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEE---------------------E
T ss_pred EEEEEEcC--CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEE---------------------E
Confidence 99999865 558999999999999999987642 2333 333344444 5
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCcce---eEEEc-cCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhh
Q 001295 573 QFDTTKNRFLAAGDDFSIKFWDMDSVQL---LTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT 648 (1106)
Q Consensus 573 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 648 (1106)
+|+|+| +++++.|+.|++||+.+++. ..++. +| ...|.+++|+ |++|++++ +++|++||+.++......
T Consensus 189 awSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h--~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~ 261 (588)
T 2j04_A 189 VWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNAS--RRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLK 261 (588)
T ss_dssp EEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCC--SSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEE
T ss_pred EEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccc--cCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEE
Confidence 555555 78889999999999988774 24553 33 4579999999 68999887 699999998776211110
Q ss_pred hcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCC
Q 001295 649 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSE 728 (1106)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~ 728 (1106)
T Consensus 262 -------------------------------------------------------------------------------- 261 (588)
T 2j04_A 262 -------------------------------------------------------------------------------- 261 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccceecccCccccccceEEEEE--cCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCC
Q 001295 729 PNQCRSLRLPENLRATKISRLIF--TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 806 (1106)
Q Consensus 729 ~~~~~~~~~~~~~~~~~i~~~~~--s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 806 (1106)
.+|...|..++| +|++..++++..+|+ ++|..+.
T Consensus 262 -----------~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~-------------------------------- 297 (588)
T 2j04_A 262 -----------TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE-------------------------------- 297 (588)
T ss_dssp -----------CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS--------------------------------
T ss_pred -----------cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc--------------------------------
Confidence 126778888999 999988999998999 9887431
Q ss_pred CCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEee
Q 001295 807 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM 871 (1106)
Q Consensus 807 ~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~ 871 (1106)
++++||+..+++. |+++++|+..... +..+.+ ...|.+++||| ||+++|+++
T Consensus 298 ---------~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~~~~-~~~I~~va~SP-dG~~lA~~~ 349 (588)
T 2j04_A 298 ---------LHVTADNIIAPYL-EKKFKKWSTIWNE-FNNYET-TLVIHGISLSP-DGYSIAIVY 349 (588)
T ss_dssp ---------EEEECCCSSHHHH-HHHHHHTTTTTTS-SSSSCC-EEEEEEEEECT-TSSEEEEEE
T ss_pred ---------EEECCCceEEEEc-CCEEEEEECCCCc-eeeecc-ceEEEEEEECC-CCCEEEEEE
Confidence 4466666665554 6666666654333 333433 44566677776 666666654
No 85
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3.1e-32 Score=305.19 Aligned_cols=203 Identities=15% Similarity=0.120 Sum_probs=169.3
Q ss_pred CCCCeeEEEEecCCCEEEEEe---CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecce
Q 001295 809 PEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 885 (1106)
Q Consensus 809 ~~~~v~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~ 885 (1106)
+...+.+++|||||+++++++ |++|+|||+.+++.+..+. |...|.+++|+| |+++|++++. +.+++|+..+++
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~-~~~~~~~~~~~~ 208 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITG-SSLEVISTVTGS 208 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECS-SCEEEEETTTCC
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccc-eeEEEEEeccCc
Confidence 556688999999999987654 6999999999999988886 777899999999 9999999985 567777777766
Q ss_pred EEE--EecCcccCeeEEEEecCCCEEEEEcCCC----cEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEE
Q 001295 886 VKS--KLKGHSKRITGLAFSHALNVLVSSGADS----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 959 (1106)
Q Consensus 886 ~~~--~l~~h~~~V~~l~~s~d~~~l~s~s~Dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l 959 (1106)
.+. ...+|...|.+++|+||++++++++.|+ .+++|++......... .....+|. ..|.+++|+|||++|
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~---~~V~~~~~Spdg~~l 284 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLR-SKQVTNRF---KGITSMDVDMKGELA 284 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEE-EEEEESSC---SCEEEEEECTTSCEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceeccee-eeeecCCC---CCeEeEEECCCCCce
Confidence 543 4467999999999999999999999887 6888998765432211 22233443 378999999999999
Q ss_pred EE-EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCc
Q 001295 960 LV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1019 (1106)
Q Consensus 960 ~~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~ 1019 (1106)
|+ +.|+.|+|||+.+++++..+. .+|..+|++++|||||++||+||.|++|+|||+...
T Consensus 285 asgs~D~~V~iwd~~~~~~~~~~~-~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 285 VLASNDNSIALVKLKDLSMSKIFK-QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTSCEEEEETTTTEEEEEET-TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEcCCCEEEEEECCCCcEEEEec-CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99 589999999999999988753 389999999999999999999999999999999643
No 86
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-31 Score=305.82 Aligned_cols=295 Identities=16% Similarity=0.217 Sum_probs=240.4
Q ss_pred CcceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEE
Q 001295 340 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 419 (1106)
Q Consensus 340 ~~~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 419 (1106)
|..+...-+|.+.+.+.++++++.. +++++.||.|+|||+.+++.... ....|...|.+++
T Consensus 81 p~~~~~~~~~~~~~~~~~~~~s~~~-l~~~~~d~~v~lw~~~~~~~~~~------------------~~~~~~~~v~~v~ 141 (401)
T 4aez_A 81 PERVLDAPGIIDDYYLNLLDWSNLN-VVAVALERNVYVWNADSGSVSAL------------------AETDESTYVASVK 141 (401)
T ss_dssp CSEEEECTTCCCCTTCBCEEECTTS-EEEEEETTEEEEEETTTCCEEEE------------------EECCTTCCEEEEE
T ss_pred cceeeeCCCCcCCceEEEEeecCCC-EEEEECCCeEEEeeCCCCcEeEe------------------eecCCCCCEEEEE
Confidence 4444444457666555444444554 66778899999999999887653 1244889999999
Q ss_pred EccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCC-CCceeEEEe
Q 001295 420 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYIFE 498 (1106)
Q Consensus 420 ~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~ 498 (1106)
|+|++++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ +. ++++|+.|+.|++||++ .+..+..+.
T Consensus 142 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~ 214 (401)
T 4aez_A 142 WSHDGSFLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQ 214 (401)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred ECCCCCEEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEc
Confidence 99999999999999999999999987665 577999999999994 45 79999999999999999 567788999
Q ss_pred ccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCC
Q 001295 499 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 578 (1106)
Q Consensus 499 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~ 578 (1106)
+|...|.+++|++ ++.+|++|+.||.|++||+++......+..+...|.+++|+|++.
T Consensus 215 ~~~~~v~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~-------------------- 272 (401)
T 4aez_A 215 GHSSEVCGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQS-------------------- 272 (401)
T ss_dssp CCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTST--------------------
T ss_pred CCCCCeeEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCC--------------------
Confidence 9999999999976 557999999999999999999888777877888888888877664
Q ss_pred CEEEEEE--CCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEE--eCCCcEEEEEccCCchhhhhhccccc
Q 001295 579 NRFLAAG--DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS--TNDNGIKILATSDGIRLLRTFENLAY 654 (1106)
Q Consensus 579 ~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~ 654 (1106)
..+++++ .|+.|++||+.+++.+..+..+ ..+.+++|+|++++++++ +.||.|++|++.++. ...
T Consensus 273 ~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~-~~~------- 341 (401)
T 4aez_A 273 NLLATGGGTMDKQIHFWNAATGARVNTVDAG---SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG-LTK------- 341 (401)
T ss_dssp TEEEEECCTTTCEEEEEETTTCCEEEEEECS---SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE-EEE-------
T ss_pred CEEEEecCCCCCEEEEEECCCCCEEEEEeCC---CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc-cee-------
Confidence 2455554 7999999999999999888643 359999999999999995 489999999987651 110
Q ss_pred ccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCcccee
Q 001295 655 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS 734 (1106)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~ 734 (1106)
++.+
T Consensus 342 -----------------------------------------------------------------~~~~----------- 345 (401)
T 4aez_A 342 -----------------------------------------------------------------QVDI----------- 345 (401)
T ss_dssp -----------------------------------------------------------------EEEE-----------
T ss_pred -----------------------------------------------------------------EEEe-----------
Confidence 0111
Q ss_pred cccCccccccceEEEEEcCCCceEEEeecCceEEEeeccc
Q 001295 735 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR 774 (1106)
Q Consensus 735 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 774 (1106)
.+|...|.+++|+|++++|++++.||.|++|++..
T Consensus 346 -----~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 346 -----PAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp -----ECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred -----cCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 12778899999999999999999999999999864
No 87
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-31 Score=293.55 Aligned_cols=285 Identities=13% Similarity=0.176 Sum_probs=240.5
Q ss_pred eeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEE
Q 001295 449 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK 528 (1106)
Q Consensus 449 ~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 528 (1106)
....+.+|.+.|.+++| ++++ +|++|+.||.|++||+.+++....+..|...|.+++|++ ++.+|++++.||.|+
T Consensus 10 ~~~~l~~h~~~v~~~~~-~~~~--~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~ 84 (313)
T 3odt_A 10 LSATLKGHDQDVRDVVA-VDDS--KVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDS--EKELLLFGGKDTMIN 84 (313)
T ss_dssp EEEEECCCSSCEEEEEE-EETT--EEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEET--TTTEEEEEETTSCEE
T ss_pred HHHHhhCCCCCcEEEEe-cCCC--EEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECC--CCCEEEEecCCCeEE
Confidence 34478999999999999 8888 799999999999999999999999999999999999876 457999999999999
Q ss_pred EEeCCCC---CceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEc
Q 001295 529 AWLYDNL---GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID 605 (1106)
Q Consensus 529 iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 605 (1106)
+|++... .....+..+...+.+++| + ++++++++.|+.|++|| .++.+..+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~---------------------~~~l~~~~~d~~i~~~d--~~~~~~~~~ 139 (313)
T 3odt_A 85 GVPLFATSGEDPLYTLIGHQGNVCSLSF--Q---------------------DGVVISGSWDKTAKVWK--EGSLVYNLQ 139 (313)
T ss_dssp EEETTCCTTSCC-CEECCCSSCEEEEEE--E---------------------TTEEEEEETTSEEEEEE--TTEEEEEEE
T ss_pred EEEeeecCCCCcccchhhcccCEEEEEe--c---------------------CCEEEEEeCCCCEEEEc--CCcEEEecc
Confidence 9998764 334456666666666666 2 23699999999999999 667777777
Q ss_pred cCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccc
Q 001295 606 ADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA 684 (1106)
Q Consensus 606 ~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1106)
.+ ...+.+++|.| ++.++++++.||.|++||.... ..
T Consensus 140 ~~--~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~------------------------------------- 177 (313)
T 3odt_A 140 AH--NASVWDAKVVSFSENKFLTASADKTIKLWQNDKV---IK------------------------------------- 177 (313)
T ss_dssp CC--SSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE---EE-------------------------------------
T ss_pred cC--CCceeEEEEccCCCCEEEEEECCCCEEEEecCce---EE-------------------------------------
Confidence 65 44799999998 9999999999999999982111 00
Q ss_pred cccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecC
Q 001295 685 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN 764 (1106)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 764 (1106)
T Consensus 178 -------------------------------------------------------------------------------- 177 (313)
T 3odt_A 178 -------------------------------------------------------------------------------- 177 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCce
Q 001295 765 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT 843 (1106)
Q Consensus 765 g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~ 843 (1106)
.+. ..|...+.+++|+|+++ +++++ ||.|++||+.+++.
T Consensus 178 ----~~~-----------------------------------~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~ 217 (313)
T 3odt_A 178 ----TFS-----------------------------------GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDV 217 (313)
T ss_dssp ----EEC-----------------------------------SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCE
T ss_pred ----EEe-----------------------------------ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhh
Confidence 000 01566788899999988 66666 89999999999999
Q ss_pred eeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeC
Q 001295 844 MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 923 (1106)
Q Consensus 844 ~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~ 923 (1106)
+..+.+|...|++++|+| ++ .|++++.||.|++||+.+++++..+..|...|++++|+|+++ +++++.||.|++|++
T Consensus 218 ~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~ 294 (313)
T 3odt_A 218 LRTYEGHESFVYCIKLLP-NG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQ 294 (313)
T ss_dssp EEEEECCSSCEEEEEECT-TS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEES
T ss_pred hhhhhcCCceEEEEEEec-CC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeC
Confidence 999999999999999999 77 588999999999999999999999999999999999999998 667999999999999
Q ss_pred CCccc
Q 001295 924 DGWEK 928 (1106)
Q Consensus 924 ~~~~~ 928 (1106)
.+++.
T Consensus 295 ~~~~~ 299 (313)
T 3odt_A 295 EKSRW 299 (313)
T ss_dssp CGGGC
T ss_pred CCCce
Confidence 98654
No 88
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.4e-33 Score=313.94 Aligned_cols=245 Identities=14% Similarity=0.154 Sum_probs=195.3
Q ss_pred cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295 742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 821 (1106)
Q Consensus 742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 821 (1106)
+...|.+++|+|++++|++++.|+.|++|++..... .. ...+. +|...|.+++|+|+
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~--------------------~~-~~~~~--~h~~~v~~~~~s~~ 66 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW--------------------KH-ARTFS--DHDKIVTCVDWAPK 66 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE--------------------EE-CCCBC--CCSSCEEEEEECTT
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce--------------------EE-EEEEe--cCCceEEEEEEeCC
Confidence 557899999999999999999999999999863210 11 11122 38999999999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCc---eeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecce---EEEEecC-c
Q 001295 822 DSYVMSAS-GGKISLFNMMTFK---TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---VKSKLKG-H 893 (1106)
Q Consensus 822 ~~~l~~~s-dg~i~vwd~~~~~---~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~---~~~~l~~-h 893 (1106)
+++|++++ |++|++||+.+++ ....+.+|...|.+++|+| ++++|++|+.||.|++||+.+++ +...+.+ |
T Consensus 67 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h 145 (377)
T 3dwl_C 67 SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPL 145 (377)
T ss_dssp TCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSC
T ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeeccc
Confidence 99999999 8999999999876 6677888999999999999 89999999999999999999877 4778888 9
Q ss_pred ccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccc-------------cceeecccCCCCCCCCCCceEEEcCCCcEEE
Q 001295 894 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ-------------KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 960 (1106)
Q Consensus 894 ~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~-------------~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~ 960 (1106)
...|++++|+|++++|++++.|++|++||+...+.. ...++... +|. ..|.+++|+|+|++|+
T Consensus 146 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~v~~~~~sp~~~~l~ 221 (377)
T 3dwl_C 146 RSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG---GWVHAVGFSPSGNALA 221 (377)
T ss_dssp CSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS---SSEEEEEECTTSSCEE
T ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC---ceEEEEEECCCCCEEE
Confidence 999999999999999999999999999998643211 12233333 443 4799999999999999
Q ss_pred E-EeCCeEEEEecCCceE----eeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcC
Q 001295 961 V-VHETQLAIFETTKLEC----VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1017 (1106)
Q Consensus 961 ~-~~d~~v~i~d~~~~~~----~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~ 1017 (1106)
+ +.|+.|++||+.++++ +..+. +|..+|.+++|+||+++|++|+.|+.+ +|+..
T Consensus 222 ~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 222 YAGHDSSVTIAYPSAPEQPPRALITVK--LSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EEETTTEEC-CEECSTTSCEEECCCEE--CSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred EEeCCCcEEEEECCCCCCcceeeEeec--CCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 8 5899999999999887 55554 789999999999999999999876666 66654
No 89
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4e-31 Score=303.68 Aligned_cols=299 Identities=16% Similarity=0.236 Sum_probs=227.4
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCce
Q 001295 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 493 (1106)
Q Consensus 414 ~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 493 (1106)
.++.|+||++ ++||+|. |++|+|||+.+|+..+. ..+.+|...|++|+|+|+|+ +|++|+.|++|+|||+.++++
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~-~~~~~~~~~V~sv~fspdg~--~lasgs~Dg~v~iWd~~~~~~ 181 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQL-LQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKR 181 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEE-EECCSTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEE-EEecCCCCcEEEEEECCCCC--EEEEEECCCeEEEEEcCCCcE
Confidence 5678999986 4777765 99999999999986643 35668889999999999999 899999999999999999999
Q ss_pred eEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCce-eEeeCCCCeeEEEEEecCCCeEEEeeeccceeEE
Q 001295 494 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 572 (1106)
Q Consensus 494 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~ 572 (1106)
+..+.+|...+.++.++ +.+|++|+.|+.+++||....... ..+..|...+..+.+++++
T Consensus 182 ~~~~~~h~~~v~~~s~~----~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g--------------- 242 (420)
T 4gga_A 182 LRNMTSHSARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG--------------- 242 (420)
T ss_dssp EEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS---------------
T ss_pred EEEEeCCCCceEEEeeC----CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCC---------------
Confidence 99999999999998863 258999999999999998865443 3555666655555555554
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCcce----eEEEccCCCCCCcCeEEEccCC-CEEEEE--eCCCcEEEEEccCCchh
Q 001295 573 QFDTTKNRFLAAGDDFSIKFWDMDSVQL----LTSIDADGGLPASPRIRFNKDG-CLLAVS--TNDNGIKILATSDGIRL 645 (1106)
Q Consensus 573 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~v~~v~~s~~~-~~l~~~--~~dg~i~iwd~~~~~~~ 645 (1106)
.++++++.|+.|++|+..+++. +.....+ ...|.+++|+|++ .+++++ +.|+.|++||+.++. .
T Consensus 243 ------~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~--~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~-~ 313 (420)
T 4gga_A 243 ------RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH--QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-C 313 (420)
T ss_dssp ------SEEEEEETTSCEEEEESSCCSSCSCCSEEECCC--SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE-E
T ss_pred ------CeeeeeeccccceEEeeccccccceeeeeeccc--CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc-c
Confidence 5899999999999999987653 3444433 4579999999954 555554 468999999886651 1
Q ss_pred hhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCC
Q 001295 646 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 725 (1106)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 725 (1106)
...+
T Consensus 314 ~~~~---------------------------------------------------------------------------- 317 (420)
T 4gga_A 314 LSAV---------------------------------------------------------------------------- 317 (420)
T ss_dssp EEEE----------------------------------------------------------------------------
T ss_pred ceee----------------------------------------------------------------------------
Confidence 0000
Q ss_pred CCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccC
Q 001295 726 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 805 (1106)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 805 (1106)
T Consensus 318 -------------------------------------------------------------------------------- 317 (420)
T 4gga_A 318 -------------------------------------------------------------------------------- 317 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCeeEEEEecCCCEEEEEe---CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEee
Q 001295 806 DSNPEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 882 (1106)
Q Consensus 806 ~~~~~~~v~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~ 882 (1106)
.+...+.++.|+++++.+++++ |+.|+|||+.+++++.++.+|...|++++|+| ++++||+|+.||+|+|||+.
T Consensus 318 --~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 318 --DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWRCF 394 (420)
T ss_dssp --ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEEEECCS
T ss_pred --ccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEECC
Confidence 0234567788888888887664 68999999999999999999999999999999 99999999999999999998
Q ss_pred cceEEEEecCcccCeeEEEEec
Q 001295 883 VDEVKSKLKGHSKRITGLAFSH 904 (1106)
Q Consensus 883 ~~~~~~~l~~h~~~V~~l~~s~ 904 (1106)
..........+...+....|..
T Consensus 395 ~~~~~~~~~~~~~~~~~~s~~~ 416 (420)
T 4gga_A 395 ELDPARRREREKASAAKSSLIH 416 (420)
T ss_dssp CSSCC-----------------
T ss_pred CCCccchhhhccCCccccccCC
Confidence 7766666665655554444433
No 90
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=8.8e-31 Score=289.10 Aligned_cols=283 Identities=18% Similarity=0.265 Sum_probs=218.3
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCce
Q 001295 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 493 (1106)
Q Consensus 414 ~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 493 (1106)
..++|+||+++ +||+| .|++|+|||+.+++.++.+ .+.+|...|++++|+|+++ +|++|+.|++|++||++++++
T Consensus 27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~-~~~~~~~~V~~v~~~~~~~--~l~sgs~Dg~v~iw~~~~~~~ 101 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKR 101 (318)
T ss_dssp TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEE
T ss_pred cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEE-EecCCCCeEEEEEECCCCC--EEEEEECCCcEEEeecCCcee
Confidence 35789999986 77766 4999999999999876533 4668899999999999999 899999999999999999999
Q ss_pred eEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEE
Q 001295 494 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 573 (1106)
Q Consensus 494 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 573 (1106)
+..+.+|...+.++.+ .+ ..+++++.++.+++|+.....
T Consensus 102 ~~~~~~h~~~~~~~~~--~~--~~l~s~~~~~~~~~~~~~~~~------------------------------------- 140 (318)
T 4ggc_A 102 LRNMTSHSARVGSLSW--NS--YILSSGSRSGHIHHHDVRVAE------------------------------------- 140 (318)
T ss_dssp EEEEECCSSCEEEEEE--ET--TEEEEEETTSEEEEEETTSSS-------------------------------------
T ss_pred EEEecCccceEEEeec--CC--CEEEEEecCCceEeeecCCCc-------------------------------------
Confidence 9999999988877664 22 467777777777777654311
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccc
Q 001295 574 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 653 (1106)
Q Consensus 574 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 653 (1106)
..+..+..| ...+..+.++++++++++++.||.|++||+.++.........
T Consensus 141 -------------------------~~~~~~~~~--~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-- 191 (318)
T 4ggc_A 141 -------------------------HHVATLSGH--SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT-- 191 (318)
T ss_dssp -------------------------CEEEEEECC--SSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEE--
T ss_pred -------------------------eeEEEEcCc--cCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceee--
Confidence 122233333 346788999999999999999999999998766211000000
Q ss_pred cccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccce
Q 001295 654 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR 733 (1106)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~ 733 (1106)
T Consensus 192 -------------------------------------------------------------------------------- 191 (318)
T 4ggc_A 192 -------------------------------------------------------------------------------- 191 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCe
Q 001295 734 SLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV 813 (1106)
Q Consensus 734 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v 813 (1106)
. ..+...|
T Consensus 192 ----------------------------------------------------------------------~--~~~~~~v 199 (318)
T 4ggc_A 192 ----------------------------------------------------------------------F--TQHQGAV 199 (318)
T ss_dssp ----------------------------------------------------------------------E--CCCCSCE
T ss_pred ----------------------------------------------------------------------e--cccCCce
Confidence 0 0134455
Q ss_pred eEEEEecCCCEEE---EEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEe--eCCCcEEEEEeecceEE
Q 001295 814 PCFALSKNDSYVM---SAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG--MDDSSIQIYNVRVDEVK 887 (1106)
Q Consensus 814 ~~l~~s~~~~~l~---~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g--~~dg~v~iwd~~~~~~~ 887 (1106)
.+++++|++..++ +++ +++|++||........... +...+..+.|++ ++..++++ +.||.|+|||+.+++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~~sg~~d~~i~iwd~~~~~~~ 277 (318)
T 4ggc_A 200 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKV 277 (318)
T ss_dssp EEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCCEE
T ss_pred EEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecc-cccceEEEEEcCCCEEEEEECCCCcEE
Confidence 5566666544322 333 6889999998877766554 667799999999 66666554 48999999999999999
Q ss_pred EEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCC
Q 001295 888 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 925 (1106)
Q Consensus 888 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~ 925 (1106)
.++.+|.+.|++|+|+|||++||||+.||+|+|||+..
T Consensus 278 ~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 278 AELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 99999999999999999999999999999999999876
No 91
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.1e-30 Score=299.88 Aligned_cols=280 Identities=16% Similarity=0.239 Sum_probs=232.4
Q ss_pred CCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEE
Q 001295 351 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 430 (1106)
Q Consensus 351 ~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 430 (1106)
--++.|+||+++ +||+|. |++|+|||+.+|+..... .+.+|...|++|+|+|||++||+|
T Consensus 106 ~y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~-----------------~~~~~~~~V~sv~fspdg~~lasg 165 (420)
T 4gga_A 106 YYLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNYLAVG 165 (420)
T ss_dssp TTCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEE-----------------ECCSTTCCEEEEEECTTSSEEEEE
T ss_pred ccceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEE-----------------EecCCCCcEEEEEECCCCCEEEEE
Confidence 357899999865 688876 899999999999876531 146888999999999999999999
Q ss_pred eCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC-CceeEEEeccCCCeEEEec
Q 001295 431 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQYIFEGHEAPVYSVCP 509 (1106)
Q Consensus 431 ~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~~~~ 509 (1106)
+.||+|+|||+.+++.+. .+.+|...|.+++|+ +. ++++|+.|+.+++||... ...+..+.+|...+..+.+
T Consensus 166 s~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~ 238 (420)
T 4gga_A 166 TSSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW 238 (420)
T ss_dssp ETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred ECCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeee
Confidence 999999999999988765 678999999998885 45 899999999999999886 4556789999999999998
Q ss_pred cccCCceEEEEEecCCeEEEEeCCCCCc----eeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEE--
Q 001295 510 HHKENIQFIFSTALDGKIKAWLYDNLGS----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA-- 583 (1106)
Q Consensus 510 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-- 583 (1106)
.+ ++.++++++.|+.+++|+..+... ......+...|.+++|+|++. ..+++
T Consensus 239 ~~--~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~--------------------~~la~~~ 296 (420)
T 4gga_A 239 AP--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS--------------------NVLATGG 296 (420)
T ss_dssp CT--TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCT--------------------TEEEEEE
T ss_pred cC--CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcc--------------------cEEEEEe
Confidence 65 457999999999999999987653 334556666777777777665 23444
Q ss_pred EECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEe--CCCcEEEEEccCCchhhhhhcccccccccCCC
Q 001295 584 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST--NDNGIKILATSDGIRLLRTFENLAYDASRTSE 661 (1106)
Q Consensus 584 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 661 (1106)
|+.|+.|++||+.+++++..+..+. .+.++.|+++++.+++++ .|+.|+|||+.++ +.+..+
T Consensus 297 gs~D~~I~iwd~~t~~~~~~~~~~~---~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~-~~v~~l------------ 360 (420)
T 4gga_A 297 GTSDRHIRIWNVCSGACLSAVDAHS---QVCSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVAEL------------ 360 (420)
T ss_dssp CTTTCEEEEEETTTTEEEEEEECSS---CEEEEEEETTTTEEEEEECTTTCCEEEEETTTC-CEEEEE------------
T ss_pred ecCCCEEEEEeCCccccceeecccc---ceeeeeecCCCCeEEEEEecCCCEEEEEECCCC-cEEEEE------------
Confidence 4579999999999999999887654 488999999999998876 6899999998776 222222
Q ss_pred CCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccc
Q 001295 662 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 741 (1106)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 741 (1106)
.+
T Consensus 361 ------------------------------------------------------------------------------~g 362 (420)
T 4gga_A 361 ------------------------------------------------------------------------------KG 362 (420)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred ------------------------------------------------------------------------------cC
Confidence 23
Q ss_pred cccceEEEEEcCCCceEEEeecCceEEEeecc
Q 001295 742 RATKISRLIFTNSGNAILALASNAIHLLWKWQ 773 (1106)
Q Consensus 742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~ 773 (1106)
|...|.+++|+|+|++|++++.|++|++|++.
T Consensus 363 H~~~V~~l~~spdg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 363 HTSRVLSLTMSPDGATVASAAADETLRLWRCF 394 (420)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred CCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 78899999999999999999999999999875
No 92
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.2e-31 Score=288.38 Aligned_cols=248 Identities=11% Similarity=0.072 Sum_probs=203.5
Q ss_pred CCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCC--CceeeeecCCCCCeeEEEEecC-CCceEEEeeCCCcEEEEEeec
Q 001295 808 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT--FKTMATFMPPPPAATFLAFHPQ-DNNIIAIGMDDSSIQIYNVRV 883 (1106)
Q Consensus 808 ~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~--~~~~~~~~~~~~~v~~l~~s~~-d~~~la~g~~dg~v~iwd~~~ 883 (1106)
+|...|.+++|+|+|++|++|+ |++|+|||+.+ .+.+.++.+|...|.+++|+++ ++++||+|+.||+|+|||+.+
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~ 86 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN 86 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence 3999999999999999999999 99999999974 4677889999999999999862 388999999999999999988
Q ss_pred ce--EEEEecCcccCeeEEEEecC--CCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCC----
Q 001295 884 DE--VKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD---- 955 (1106)
Q Consensus 884 ~~--~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d---- 955 (1106)
++ .+..+.+|...|.+++|+|+ +.+|++++.|++|++||+.+...... ....+|. ..+.+++|+|+
T Consensus 87 ~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~---~~~~~h~---~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP---IIIDAHA---IGVNSASWAPATIEE 160 (297)
T ss_dssp SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC---EEEECCS---SCEEEEEECCCC---
T ss_pred CceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee---eeeeccc---CccceEeecCCcccc
Confidence 74 56778899999999999998 89999999999999999987532211 2233444 37899999997
Q ss_pred ---------CcEEEE-EeCCeEEEEecCCce----EeeecccCCCCCCeeEEEECCCC---CEEEEEEcCCeEEEEEcCC
Q 001295 956 ---------QIHFLV-VHETQLAIFETTKLE----CVKQWVPRESSAPITHATFSCDS---QLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus 956 ---------g~~l~~-~~d~~v~i~d~~~~~----~~~~~~~~~h~~~v~~l~~s~d~---~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
+++|++ +.|+.|++||+.+++ ....+ .+|...|.+++|+|++ .+||+++.|++|+|||+.+
T Consensus 161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l--~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL--EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE--CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe--cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 568888 589999999998765 44444 4899999999999995 8999999999999999987
Q ss_pred cee--EEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecC
Q 001295 1019 LKL--RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus 1019 ~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
+.. ..... ...+| ...+. .++|+| ++++|++++.||.|++|+...
T Consensus 239 ~~~~~~~~~~----~~~~~-~~~v~--~~~~s~-~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 239 EQGPWKKTLL----KEEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp TTSCCEEEES----SSSCC-SSCEE--EEEECS-SSCCEEEEETTSCEEEEEECT
T ss_pred CCCccceeee----ecccC-CCcEE--EEEECC-CCCEEEEEcCCCcEEEEEECC
Confidence 531 11111 01122 23355 899999 799999999999999999864
No 93
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4e-31 Score=301.71 Aligned_cols=290 Identities=15% Similarity=0.167 Sum_probs=224.3
Q ss_pred CCCCcC--eEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295 409 KDPGVS--VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 486 (1106)
Q Consensus 409 ~~h~~~--V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 486 (1106)
.+|... +.+++|++ ..+++++.|+.|++||+.+++..... ...|...|.+++|+|+++ +|++|+.||.|++|
T Consensus 88 ~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iw 161 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGS--FLSVGLGNGLVDIY 161 (401)
T ss_dssp TTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred CCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCC--EEEEECCCCeEEEE
Confidence 355544 44566654 56888899999999999998866532 223889999999999999 89999999999999
Q ss_pred eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCC-CCceeEeeCCCCeeEEEEEecCCCeEEEeee
Q 001295 487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 565 (1106)
Q Consensus 487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~ 565 (1106)
|+.+++.+..+.+|...|.+++|+ +.++++++.||.|++||++. ......+..|...|.+++|+|++
T Consensus 162 d~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-------- 229 (401)
T 4aez_A 162 DVESQTKLRTMAGHQARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG-------- 229 (401)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS--------
T ss_pred ECcCCeEEEEecCCCCceEEEEEC----CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCC--------
Confidence 999999999999999999999983 25899999999999999984 44455666666666666666555
Q ss_pred ccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCC-CEEEEEe--CCCcEEEEEccCC
Q 001295 566 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVST--NDNGIKILATSDG 642 (1106)
Q Consensus 566 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~--~dg~i~iwd~~~~ 642 (1106)
++|++++.|+.|++||+.+++.+..+..+ ...|.+++|+|++ .++++++ .|+.|++||+.++
T Consensus 230 -------------~~l~s~~~d~~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~ 294 (401)
T 4aez_A 230 -------------LQLASGGNDNVVQIWDARSSIPKFTKTNH--NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG 294 (401)
T ss_dssp -------------SEEEEEETTSCEEEEETTCSSEEEEECCC--SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC
T ss_pred -------------CEEEEEeCCCeEEEccCCCCCccEEecCC--cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC
Confidence 48999999999999999999998888766 4479999999966 5666654 6999999998655
Q ss_pred chhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEe
Q 001295 643 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 722 (1106)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~ 722 (1106)
. .+..+
T Consensus 295 ~-~~~~~------------------------------------------------------------------------- 300 (401)
T 4aez_A 295 A-RVNTV------------------------------------------------------------------------- 300 (401)
T ss_dssp C-EEEEE-------------------------------------------------------------------------
T ss_pred C-EEEEE-------------------------------------------------------------------------
Confidence 1 10000
Q ss_pred cCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccc
Q 001295 723 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 802 (1106)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 802 (1106)
T Consensus 301 -------------------------------------------------------------------------------- 300 (401)
T 4aez_A 301 -------------------------------------------------------------------------------- 300 (401)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCeeEEEEecCCCEEEEE--e-CCeEEEEEcCCCceee--eecCCCCCeeEEEEecCCCceEEEeeCCCcEE
Q 001295 803 DVTDSNPEEAVPCFALSKNDSYVMSA--S-GGKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQ 877 (1106)
Q Consensus 803 ~~~~~~~~~~v~~l~~s~~~~~l~~~--s-dg~i~vwd~~~~~~~~--~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~ 877 (1106)
.+...|.+++|+|++++++++ + ||.|++||+.++.... .+.+|...|.+++|+| ++++|++++.||.|+
T Consensus 301 -----~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~~~dg~i~ 374 (401)
T 4aez_A 301 -----DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP-DGRILSTAASDENLK 374 (401)
T ss_dssp -----ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECT-TSSEEEEECTTSEEE
T ss_pred -----eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECC-CCCEEEEEeCCCcEE
Confidence 033446777777777777773 2 6888888887754443 4678999999999999 999999999999999
Q ss_pred EEEeecceEEEEec
Q 001295 878 IYNVRVDEVKSKLK 891 (1106)
Q Consensus 878 iwd~~~~~~~~~l~ 891 (1106)
+|++.+++.+....
T Consensus 375 iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 375 FWRVYDGDHVKRPI 388 (401)
T ss_dssp EEECCC--------
T ss_pred EEECCCCccccccc
Confidence 99999988776543
No 94
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=8.6e-32 Score=295.71 Aligned_cols=226 Identities=19% Similarity=0.299 Sum_probs=175.4
Q ss_pred ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCC--CCceEEEEecCCCcEE
Q 001295 407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIK 484 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d--~~~~~l~s~~~d~~i~ 484 (1106)
++.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++.. ....+.+|.+.|.+++|+++ +. +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 57899999999999999999999999999999999987532 23468899999999999864 66 799999999999
Q ss_pred EEeCCCCc--eeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCc---eeEeeCCCCeeEEEEEecCCCe
Q 001295 485 VWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS---RVDYEAPGRWCTTMAYSADGTR 559 (1106)
Q Consensus 485 iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~ 559 (1106)
+||+++++ .+..+.+|...|.+++|+++.++.+|++|+.|+.|++||++.... ...+..|...+.+++|+|+...
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 99999874 567888999999999998876678999999999999999987543 2344567778888888887420
Q ss_pred E-EEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCc---ceeEEEccCCCCCCcCeEEEccCC----CEEEEEeCC
Q 001295 560 T-YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV---QLLTSIDADGGLPASPRIRFNKDG----CLLAVSTND 631 (1106)
Q Consensus 560 ~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~v~~v~~s~~~----~~l~~~~~d 631 (1106)
- +..+..+ .....+.+|++++.|+.|++||+..+ +.+..+.+| ...|.+++|+|++ .+|++++.|
T Consensus 165 ~~~~~~~~~-----~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h--~~~V~~v~~sp~~~~~~~~las~s~D 237 (316)
T 3bg1_A 165 GSLIDHPSG-----QKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH--SDWVRDVAWAPSIGLPTSTIASCSQD 237 (316)
T ss_dssp ------CCS-----CCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC--SSCEEEEECCCCSSCSCCEEEEEETT
T ss_pred ccccccccc-----cCccccceEEEecCCCeEEEEEeCCCCccceeeecccC--CCceEEEEecCCCCCCCceEEEEcCC
Confidence 0 0000000 01112467999999999999999755 345555554 5589999999986 899999999
Q ss_pred CcEEEEEccCC
Q 001295 632 NGIKILATSDG 642 (1106)
Q Consensus 632 g~i~iwd~~~~ 642 (1106)
++|++|++.+.
T Consensus 238 ~~v~iw~~~~~ 248 (316)
T 3bg1_A 238 GRVFIWTCDDA 248 (316)
T ss_dssp CEEEEEECSST
T ss_pred CeEEEEEccCc
Confidence 99999998653
No 95
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=8.5e-31 Score=304.70 Aligned_cols=273 Identities=12% Similarity=0.193 Sum_probs=200.6
Q ss_pred ccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCC------------cC
Q 001295 347 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG------------VS 414 (1106)
Q Consensus 347 ~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~------------~~ 414 (1106)
+.|.+.|++++|+|+|++ ||+|+.||.|+|||+.+++....... ........+.+|. ..
T Consensus 25 ~~~~~~V~~v~~s~~g~~-la~g~~dg~v~iw~~~~~~~~~~~~~--------~~~~~~~~~~~h~~~~~~~~~~~~~~~ 95 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGEL-LATGDKGGRVVIFQQEQENKIQSHSR--------GEYNVYSTFQSHEPEFDYLKSLEIEEK 95 (447)
T ss_dssp CCGGGSEEEEEECSSSSE-EEEEETTSEEEEEEECC-----CCCC--------CCEEEEEEEECCCCEEEGGGTEEECCC
T ss_pred ccccCcEEEEEECCCCCE-EEEEcCCCeEEEEEecCCCCCCcccc--------cceeEecccccccccccccccccccCc
Confidence 457899999999999995 99999999999999998763110000 0000011367887 88
Q ss_pred eEEEEEccCC--CEEEEEeCCCeEEEEEccCCceee------------------------------------eeee-ecc
Q 001295 415 VNRVIWSPDG--SLFGVAYSRHIVQIYSYHGGDEVR------------------------------------QHLE-IDA 455 (1106)
Q Consensus 415 V~~l~~spdg--~~las~~~d~~v~iwd~~~~~~~~------------------------------------~~~~-l~~ 455 (1106)
|.+++|+|++ .+|++++.|++|++||+.+++... .... +.+
T Consensus 96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
T 3dw8_B 96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA 175 (447)
T ss_dssp CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence 9999999998 899999999999999998754310 0011 368
Q ss_pred ccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC-CceeEE-------EeccCCCeEEEeccccCCceEEEEEecCCeE
Q 001295 456 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQYI-------FEGHEAPVYSVCPHHKENIQFIFSTALDGKI 527 (1106)
Q Consensus 456 h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~-------~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i 527 (1106)
|...|.+++|+|+++ +|++| .|+.|++||+.+ ++.+.. +.+|...|.+++|+++.. .+|++|+.||.|
T Consensus 176 h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~~~dg~i 251 (447)
T 3dw8_B 176 HTYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC-NTFVYSSSKGTI 251 (447)
T ss_dssp CSSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT-TEEEEEETTSCE
T ss_pred CCcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC-cEEEEEeCCCeE
Confidence 999999999999999 78888 799999999984 444442 568999999999976531 689999999999
Q ss_pred EEEeCCCCCc----eeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCC-cceeE
Q 001295 528 KAWLYDNLGS----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLT 602 (1106)
Q Consensus 528 ~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~ 602 (1106)
++||+++... ...+..+..... ... .......+.+++|+|++.+|++++. +.|++||+.+ ++.+.
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~ 321 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSN--------RSF-FSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVE 321 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-------------CCH-HHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSC
T ss_pred EEEECcCCccccceeeEeccCCCccc--------ccc-ccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccc
Confidence 9999998765 455555543000 000 0001124455555555568999888 9999999997 88888
Q ss_pred EEccCCCCCC-------------cCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 603 SIDADGGLPA-------------SPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 603 ~~~~~~~~~~-------------v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
.+..+..... +..++|+|++++|++|+.||.|++||+.++
T Consensus 322 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 322 TYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp CEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred eeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence 8876643111 234999999999999999999999999887
No 96
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.98 E-value=1.7e-30 Score=291.00 Aligned_cols=226 Identities=12% Similarity=0.130 Sum_probs=179.5
Q ss_pred ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCcee-eeeeeeccccCCeeEEEEcC--CCCceEEEEecCCCcE
Q 001295 407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTI 483 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~-~~~~~l~~h~~~V~~~~~s~--d~~~~~l~s~~~d~~i 483 (1106)
++.+|.+.|++++|+|++++||+|+.||.|++||+.++... .....+.+|...|.+++|+| ++. +|++|+.|+.|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v 83 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV 83 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence 57899999999999999999999999999999999976432 33446789999999999999 577 89999999999
Q ss_pred EEEeCCCC---------ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEe
Q 001295 484 KVWDATNG---------AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 554 (1106)
Q Consensus 484 ~iwd~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 554 (1106)
++||+.++ +.+..+.+|...|.+++|+++.++.+|++++.||.|++||+++......+.... .+..+.+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~ 162 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTS-EMKVLSIP 162 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEE-EEESCSCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccc-cccccccc
Confidence 99999887 567889999999999999876335799999999999999998876544332100 01111111
Q ss_pred cCCCeEEEeeeccceeEEEEcCC---CCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCC----CEEEE
Q 001295 555 ADGTRTYQGFRKRSLGVVQFDTT---KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG----CLLAV 627 (1106)
Q Consensus 555 ~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~----~~l~~ 627 (1106)
+. .....+.++.|+|+ +..+++++.++.+.+|+...++.........+...|.+++|+|++ ++|++
T Consensus 163 ~~-------~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s 235 (351)
T 3f3f_A 163 PA-------NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT 235 (351)
T ss_dssp CS-------SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE
T ss_pred cC-------CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEE
Confidence 11 12235666777775 778999999999999988887763333333445689999999998 89999
Q ss_pred EeCCCcEEEEEccCC
Q 001295 628 STNDNGIKILATSDG 642 (1106)
Q Consensus 628 ~~~dg~i~iwd~~~~ 642 (1106)
++.||.|++||+.++
T Consensus 236 ~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 236 GCKDGRIRIFKITEK 250 (351)
T ss_dssp EETTSCEEEEEEEEC
T ss_pred EcCCCeEEEEeCCCC
Confidence 999999999999765
No 97
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.98 E-value=2.1e-31 Score=292.59 Aligned_cols=246 Identities=12% Similarity=0.139 Sum_probs=200.4
Q ss_pred CCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCc--eeeeecCCCCCeeEEEEecC-CCceEEEeeCCCcEEEEEeec
Q 001295 808 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK--TMATFMPPPPAATFLAFHPQ-DNNIIAIGMDDSSIQIYNVRV 883 (1106)
Q Consensus 808 ~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~--~~~~~~~~~~~v~~l~~s~~-d~~~la~g~~dg~v~iwd~~~ 883 (1106)
+|...|++++|+|+|++|++|+ |++|+|||+.++. .+..+.+|...|.+++|+++ ++++||+|+.|++|++||+.+
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~ 90 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN 90 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC
Confidence 3999999999999999999999 9999999998764 46778999999999999862 488999999999999999988
Q ss_pred c--eEEEEecCcccCeeEEEEecC--CCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCC----
Q 001295 884 D--EVKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD---- 955 (1106)
Q Consensus 884 ~--~~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d---- 955 (1106)
+ +.+..+.+|...|++++|+|+ +.+|++++.|++|++||+..... ........+|. ..+.+++|+|+
T Consensus 91 ~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~--~~~~~~~~~h~---~~v~~~~~~~~~~~~ 165 (316)
T 3bg1_A 91 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ--WEVKKINNAHT---IGCNAVSWAPAVVPG 165 (316)
T ss_dssp SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC--EEECCBTTSSS---SCBCCCEECCCCCC-
T ss_pred CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC--cceeeeecccc---CCcceEEEccccCCc
Confidence 7 466788899999999999998 78999999999999999987432 11233344554 37889999998
Q ss_pred -------------CcEEEE-EeCCeEEEEecCCc---eEeeecccCCCCCCeeEEEECCCC----CEEEEEEcCCeEEEE
Q 001295 956 -------------QIHFLV-VHETQLAIFETTKL---ECVKQWVPRESSAPITHATFSCDS----QLVYACFLDATVCVF 1014 (1106)
Q Consensus 956 -------------g~~l~~-~~d~~v~i~d~~~~---~~~~~~~~~~h~~~v~~l~~s~d~----~~l~t~s~Dg~i~vw 1014 (1106)
+++|++ +.|+.|++||+++. +++..+. +|...|.+++|+|++ .+|++++.|++|+||
T Consensus 166 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~--~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw 243 (316)
T 3bg1_A 166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE--AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW 243 (316)
T ss_dssp -----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB--CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEE
T ss_pred cccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc--cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEE
Confidence 467887 58999999999755 3455544 899999999999987 789999999999999
Q ss_pred EcCCcee---E-EeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecC
Q 001295 1015 SAANLKL---R-CRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus 1015 d~~~~~~---~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
++.+... . ..+ .+| ...++ .++|+| ++++|++++.||+|++|+...
T Consensus 244 ~~~~~~~~~~~~~~~-------~~~-~~~v~--~v~~sp-~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 244 TCDDASSNTWSPKLL-------HKF-NDVVW--HVSWSI-TANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp ECSSTTCCCCBCCEE-------EEC-SSCEE--EEEECT-TTCCEEEEESSSCEEEEEECT
T ss_pred EccCccccchhhhhh-------hcC-CCcEE--EEEEcC-CCCEEEEEcCCCeEEEEEECC
Confidence 9986321 1 111 122 23366 899999 689999999999999999864
No 98
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=5.8e-30 Score=295.62 Aligned_cols=233 Identities=20% Similarity=0.334 Sum_probs=204.7
Q ss_pred cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEE
Q 001295 348 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 427 (1106)
Q Consensus 348 ~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 427 (1106)
.|...|.|++| +|+ ++++|+.||.|+|||+.+++.+.. +.+|.+.|.+++| ++++|
T Consensus 131 ~~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h~~~v~~l~~--~~~~l 186 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DERVI 186 (435)
T ss_dssp SSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSSEE
T ss_pred CCCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCCCCcEEEEEE--CCCEE
Confidence 47788999887 788 499999999999999999887653 6899999999999 88999
Q ss_pred EEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCcee---EEEeccCCCe
Q 001295 428 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ---YIFEGHEAPV 504 (1106)
Q Consensus 428 as~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~h~~~v 504 (1106)
++|+.||+|++||+.+++.+. .+.+|...|.+++|++ . ++++|+.|+.|++||+.++... ..+.+|...|
T Consensus 187 ~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 259 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 259 (435)
T ss_dssp EEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred EEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcE
Confidence 999999999999999988665 6789999999999974 4 7999999999999999988766 6788999999
Q ss_pred EEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEE
Q 001295 505 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 584 (1106)
Q Consensus 505 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 584 (1106)
.+++| ++.++++|+.||.|++||+++......+..+...+.++.+. + +++++|
T Consensus 260 ~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~---------------------~~l~~g 312 (435)
T 1p22_A 260 NVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--D---------------------RLVVSG 312 (435)
T ss_dssp EEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--T---------------------TEEEEE
T ss_pred EEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--C---------------------CEEEEE
Confidence 99997 34689999999999999999988888888887777777663 2 369999
Q ss_pred ECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 585 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 585 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
+.||.|++||+.+++.+..+..| ...|.+++| ++.+|++|+.||.|++||+.++
T Consensus 313 ~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 313 SSDNTIRLWDIECGACLRVLEGH--EELVRCIRF--DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp ETTSCEEEEETTTCCEEEEECCC--SSCEEEEEC--CSSEEEEEETTSCEEEEEHHHH
T ss_pred eCCCeEEEEECCCCCEEEEEeCC--cCcEEEEEe--cCCEEEEEeCCCcEEEEECCCC
Confidence 99999999999999999999866 447888888 7899999999999999998654
No 99
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=5.1e-30 Score=289.49 Aligned_cols=300 Identities=16% Similarity=0.167 Sum_probs=235.5
Q ss_pred ccCCCCcCeEEEEEccC---CCEEEEEeCCCeEEEEEccC-CceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCc
Q 001295 407 LVKDPGVSVNRVIWSPD---GSLFGVAYSRHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT 482 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~spd---g~~las~~~d~~v~iwd~~~-~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~ 482 (1106)
.+.+|.+.|++++|+|+ |++|++|+.||.|+|||+.+ +..+. ..+.+|...|.+++|+|+++ +|++++.|+.
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~ 109 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP--KAQQMHTGPVLDVCWSDDGS--KVFTASCDKT 109 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE--EEEEECSSCEEEEEECTTSS--EEEEEETTSE
T ss_pred eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE--EEeccccCCEEEEEECcCCC--EEEEEcCCCc
Confidence 47899999999999999 69999999999999999997 44332 35778999999999999999 8999999999
Q ss_pred EEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEE
Q 001295 483 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 562 (1106)
Q Consensus 483 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~ 562 (1106)
|++||+.+++.+. +.+|...|.+++|.+.+++.+|++++.||.|++||+++......+..+. .+.++.+.
T Consensus 110 v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~-------- 179 (368)
T 3mmy_A 110 AKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI-------- 179 (368)
T ss_dssp EEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--------
T ss_pred EEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--------
Confidence 9999999998776 5569999999999777778899999999999999999887777666554 23333332
Q ss_pred eeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCE----EEEEeCCCcEEEEE
Q 001295 563 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL----LAVSTNDNGIKILA 638 (1106)
Q Consensus 563 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~----l~~~~~dg~i~iwd 638 (1106)
...+++++.++.+++|++.................+.++++.++... +++++.||.|++|+
T Consensus 180 ---------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~ 244 (368)
T 3mmy_A 180 ---------------YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY 244 (368)
T ss_dssp ---------------TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEE
T ss_pred ---------------CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEe
Confidence 23588899999999999987665444433333345667777766554 99999999999999
Q ss_pred ccCCch--hhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCC
Q 001295 639 TSDGIR--LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 716 (1106)
Q Consensus 639 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 716 (1106)
+..... ....+.+|...
T Consensus 245 ~~~~~~~~~~~~~~~~~~~------------------------------------------------------------- 263 (368)
T 3mmy_A 245 INPPNPAKDNFTFKCHRSN------------------------------------------------------------- 263 (368)
T ss_dssp SSCSCHHHHSEEEECSEEC-------------------------------------------------------------
T ss_pred cCCCCccccceeeeeeecc-------------------------------------------------------------
Confidence 976521 01111110000
Q ss_pred ceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCC
Q 001295 717 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS 796 (1106)
Q Consensus 717 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~ 796 (1106)
.. .
T Consensus 264 --------------------------------------~~-~-------------------------------------- 266 (368)
T 3mmy_A 264 --------------------------------------GT-N-------------------------------------- 266 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------cc-c--------------------------------------
Confidence 00 0
Q ss_pred CCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCc
Q 001295 797 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS 875 (1106)
Q Consensus 797 ~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~ 875 (1106)
.....|...|++++|+|++++|++++ ||.|++||+.+++.+..+.+|...|++++|+| ++++||+|+.|+.
T Consensus 267 -------~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~s~d~~ 338 (368)
T 3mmy_A 267 -------TSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNH-NGNIFAYASSYDW 338 (368)
T ss_dssp --------CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECT-TSSCEEEEECCCS
T ss_pred -------ccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECC-CCCeEEEEecccc
Confidence 00011566799999999999999998 89999999999999999999999999999999 9999999999986
Q ss_pred EEEEEe
Q 001295 876 IQIYNV 881 (1106)
Q Consensus 876 v~iwd~ 881 (1106)
.+.|++
T Consensus 339 ~~~~~~ 344 (368)
T 3mmy_A 339 SKGHEF 344 (368)
T ss_dssp TTCGGG
T ss_pred cccccc
Confidence 655554
No 100
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=1.9e-29 Score=278.30 Aligned_cols=282 Identities=17% Similarity=0.287 Sum_probs=229.7
Q ss_pred eEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEE
Q 001295 746 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV 825 (1106)
Q Consensus 746 i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l 825 (1106)
...++||+++ +++++.|++|+|||+. +|+.+.. +...+|...|++++|+|++++|
T Consensus 28 ~~~l~WS~~~--~lAvg~D~tV~iWd~~----------------------tg~~~~~-~~~~~~~~~V~~v~~~~~~~~l 82 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVALDNSVYLWSAS----------------------SGDILQL-LQMEQPGEYISSVAWIKEGNYL 82 (318)
T ss_dssp CBCEEECTTS--EEEEEETTEEEEEETT----------------------TCCEEEE-EECCSTTCCEEEEEECTTSSEE
T ss_pred ceEEEECCCC--EEEEEeCCEEEEEECC----------------------CCCEEEE-EEecCCCCeEEEEEECCCCCEE
Confidence 4678999886 4455669999999875 4433221 2223488899999999999999
Q ss_pred EEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecc-eEEEEecCcccCeeEEEEe
Q 001295 826 MSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHSKRITGLAFS 903 (1106)
Q Consensus 826 ~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~s 903 (1106)
++|+ ||+|++||+.+++.+..+.+|...+.++.+ ++.++++|+.++.+++|+.... ..+..+.+|...+..++|+
T Consensus 83 ~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~---~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (318)
T 4ggc_A 83 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159 (318)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE---ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred EEEECCCcEEEeecCCceeEEEecCccceEEEeec---CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEc
Confidence 9999 899999999999999999999988877665 4579999999999999998874 5667889999999999999
Q ss_pred cCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE----EeCCeEEEEecCCceEee
Q 001295 904 HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV----VHETQLAIFETTKLECVK 979 (1106)
Q Consensus 904 ~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~----~~d~~v~i~d~~~~~~~~ 979 (1106)
+++++|++++.|++|++||+.+++....... ....+. ..+..++++|++..++. +.++.|++||........
T Consensus 160 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~ 235 (318)
T 4ggc_A 160 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ-TFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 235 (318)
T ss_dssp TTSSEEEEEETTSCEEEEESSCBTTBSCCSE-EECCCC---SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE
T ss_pred CCCCEEEEEecCcceeEEECCCCccccccee-eecccC---CceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc
Confidence 9999999999999999999998764332222 222222 47889999998765443 257899999999888776
Q ss_pred ecccCCCCCCeeEEEECCCCCEEEEEE--cCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEE
Q 001295 980 QWVPRESSAPITHATFSCDSQLVYACF--LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1057 (1106)
Q Consensus 980 ~~~~~~h~~~v~~l~~s~d~~~l~t~s--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t 1057 (1106)
.. .|...+..+.|+|++..+++++ .|++|+|||+.+++.+..+. +|.. .|. +++|+| |+++|++
T Consensus 236 ~~---~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~-------gH~~-~V~--~l~~sp-dg~~l~S 301 (318)
T 4ggc_A 236 AV---DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-------GHTS-RVL--SLTMSP-DGATVAS 301 (318)
T ss_dssp EE---ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-------CCSS-CEE--EEEECT-TSSCEEE
T ss_pred cc---cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc-------CCCC-CEE--EEEEcC-CCCEEEE
Confidence 65 4577899999999999987765 79999999999999998887 4433 366 899999 7999999
Q ss_pred EeCCCcEEEEeecCCC
Q 001295 1058 GLSDGGVHVFEPLESE 1073 (1106)
Q Consensus 1058 ~~~Dg~v~vW~~~~~~ 1073 (1106)
|+.||+|+|||+.+.+
T Consensus 302 ~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 302 AAADETLRLWRCFELD 317 (318)
T ss_dssp EETTTEEEEECCSCCC
T ss_pred EecCCeEEEEECCCCC
Confidence 9999999999997754
No 101
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=4.2e-30 Score=286.91 Aligned_cols=294 Identities=13% Similarity=0.103 Sum_probs=230.0
Q ss_pred ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295 407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 486 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 486 (1106)
+..+|.+.|++++|+|++++|++++.|+.|+|||+.+++.......+.+|...|.+++|+|+++. +|++|+.|+.|++|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEE
Confidence 35789999999999999999999999999999999988732223346689999999999999872 38899999999999
Q ss_pred eC-CCCceeEEEec--cCCCeEEEeccccCCceEEEEEecCCeEEEEeCCC---------CCceeEeeCCCCeeEEEEEe
Q 001295 487 DA-TNGAKQYIFEG--HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN---------LGSRVDYEAPGRWCTTMAYS 554 (1106)
Q Consensus 487 d~-~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~s 554 (1106)
|+ .+++. ..+.+ |...|.+++|++ +.+|++++.|+.|++||+++ ......+. +...+.+++
T Consensus 85 d~~~~~~~-~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~-- 157 (342)
T 1yfq_A 85 DLIGSPSF-QALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMD-- 157 (342)
T ss_dssp CSSSSSSE-EECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEE--
T ss_pred EeccCCce-EeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEE--
Confidence 99 77754 78888 999999999977 47999999999999999886 44333333 444444444
Q ss_pred cCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCC-cceeEEEccCCCCCCcCeEEEcc-CCCEEEEEeCCC
Q 001295 555 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDN 632 (1106)
Q Consensus 555 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg 632 (1106)
++|++ +++++.|+.|++||+.+ +..........+...+.+++|+| +++++++++.||
T Consensus 158 -------------------~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg 216 (342)
T 1yfq_A 158 -------------------TNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG 216 (342)
T ss_dssp -------------------ECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS
T ss_pred -------------------ecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCC
Confidence 44444 88999999999999988 55432222223345799999999 999999999999
Q ss_pred cEEEEEccCCc-----hhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCC
Q 001295 633 GIKILATSDGI-----RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK 707 (1106)
Q Consensus 633 ~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (1106)
.|++|++.... .....+..
T Consensus 217 ~i~i~~~~~~~~~~~~~~~~~~~~-------------------------------------------------------- 240 (342)
T 1yfq_A 217 RVAVEFFDDQGDDYNSSKRFAFRC-------------------------------------------------------- 240 (342)
T ss_dssp EEEEEECCTTCCSTTCTTCEEEEC--------------------------------------------------------
T ss_pred cEEEEEEcCCCcccccccceeeec--------------------------------------------------------
Confidence 99999986540 00000000
Q ss_pred ccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCcccccc
Q 001295 708 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV 787 (1106)
Q Consensus 708 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 787 (1106)
|...
T Consensus 241 ----------------------------------~~~~------------------------------------------ 244 (342)
T 1yfq_A 241 ----------------------------------HRLN------------------------------------------ 244 (342)
T ss_dssp ----------------------------------CCCC------------------------------------------
T ss_pred ----------------------------------cccc------------------------------------------
Confidence 0000
Q ss_pred CccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCC-CCCeeEEEEecCCCc
Q 001295 788 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP-PPAATFLAFHPQDNN 865 (1106)
Q Consensus 788 ~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~-~~~v~~l~~s~~d~~ 865 (1106)
..+..|...|.+++|+|++++|++++ ||.|++||+.+++.+..+.+| ...|.+++ | +++
T Consensus 245 ----------------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~-~~~ 305 (342)
T 1yfq_A 245 ----------------LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C-SDN 305 (342)
T ss_dssp ----------------TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E-CSS
T ss_pred ----------------ccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C-CCC
Confidence 00012677899999999999999998 899999999999999999998 99999999 7 899
Q ss_pred eEEEeeCCCc-EEEEE
Q 001295 866 IIAIGMDDSS-IQIYN 880 (1106)
Q Consensus 866 ~la~g~~dg~-v~iwd 880 (1106)
+|++|+.||. .+.|.
T Consensus 306 ~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 306 ILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEEEECTHHHHCSS
T ss_pred eEEEEecCCccccccc
Confidence 9999999998 44443
No 102
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=2.6e-30 Score=288.57 Aligned_cols=245 Identities=9% Similarity=0.008 Sum_probs=202.6
Q ss_pred cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCC-E
Q 001295 348 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS-L 426 (1106)
Q Consensus 348 ~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~ 426 (1106)
.|.+.|++++|+|+|++ |++|+.||.|+|||+.+++..... ..+.+|...|.+++|+|+++ +
T Consensus 9 ~h~~~v~~~~~s~~~~~-l~~~~~d~~v~iw~~~~~~~~~~~----------------~~~~~~~~~v~~~~~~~~~~~~ 71 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSL-LLITSWDGSLTVYKFDIQAKNVDL----------------LQSLRYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp CCSSCEEEEEEEGGGTE-EEEEETTSEEEEEEEETTTTEEEE----------------EEEEECSSCEEEEEEEESSSEE
T ss_pred CCCCcEEEEEEcCCCCE-EEEEcCCCeEEEEEeCCCCccccc----------------eeeeecCCceEEEEECCCCCcE
Confidence 49999999999999995 899999999999999887621100 02458899999999999999 9
Q ss_pred EEEEeCCCeEEEEEc-cCCceeeeeeeecc--ccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC---------Ccee
Q 001295 427 FGVAYSRHIVQIYSY-HGGDEVRQHLEIDA--HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---------GAKQ 494 (1106)
Q Consensus 427 las~~~d~~v~iwd~-~~~~~~~~~~~l~~--h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~---------~~~~ 494 (1106)
|++|+.||.|++||+ .+++. ..+.+ |...|.+++|+| +. ++++++.|+.|++||+++ ++++
T Consensus 72 l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred EEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCee
Confidence 999999999999999 88754 25778 999999999999 77 899999999999999988 7777
Q ss_pred EEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCC-CCce--eEeeCCCCeeEEEEEecCCCeEEEeeeccceeE
Q 001295 495 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSR--VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 571 (1106)
Q Consensus 495 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~--~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~ 571 (1106)
..+. |...|.+++|++ + .+++++.|+.|++||++. .... .....+...+.+
T Consensus 145 ~~~~-~~~~v~~~~~~~--~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~--------------------- 198 (342)
T 1yfq_A 145 NNTK-VKNKIFTMDTNS--S--RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRD--------------------- 198 (342)
T ss_dssp SSSS-SCCCEEEEEECS--S--EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEE---------------------
T ss_pred eEEe-eCCceEEEEecC--C--cEEEEeCCCeEEEEECCccccccceeeecCCCCceeE---------------------
Confidence 7776 889999999864 3 299999999999999987 4432 222333444444
Q ss_pred EEEcC-CCCEEEEEECCCeEEEEECCCc------ceeEEEccCCC-------CCCcCeEEEccCCCEEEEEeCCCcEEEE
Q 001295 572 VQFDT-TKNRFLAAGDDFSIKFWDMDSV------QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKIL 637 (1106)
Q Consensus 572 ~~~~~-~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~-------~~~v~~v~~s~~~~~l~~~~~dg~i~iw 637 (1106)
++|+| +++++++++.||.|++|++... +....+..+.. ...|.+++|+|++++|++++.||.|++|
T Consensus 199 i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw 278 (342)
T 1yfq_A 199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278 (342)
T ss_dssp EEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred EEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEE
Confidence 45555 5558999999999999999887 77788876633 3379999999999999999999999999
Q ss_pred EccCC
Q 001295 638 ATSDG 642 (1106)
Q Consensus 638 d~~~~ 642 (1106)
|+.++
T Consensus 279 d~~~~ 283 (342)
T 1yfq_A 279 NLQTR 283 (342)
T ss_dssp ETTTT
T ss_pred cCccH
Confidence 99876
No 103
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=6.9e-30 Score=295.03 Aligned_cols=275 Identities=21% Similarity=0.319 Sum_probs=230.0
Q ss_pred eccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeC
Q 001295 453 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 532 (1106)
Q Consensus 453 l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 532 (1106)
..+|...|.++.| +++ ++++|+.||.|++||+.+++.+..+.+|...|.+++| ++.+|++|+.||.|++||+
T Consensus 129 ~~~~~~~v~~~~~--d~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~----~~~~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQ--KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY----DERVIITGSSDSTVRVWDV 200 (435)
T ss_dssp CCSSCCCEEEEEC--CSS--EEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC----CSSEEEEEETTSCEEEEES
T ss_pred ccCCCCcEEEEEE--CCC--EEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE----CCCEEEEEcCCCeEEEEEC
Confidence 3457778999888 677 8999999999999999999999999999999999997 4479999999999999999
Q ss_pred CCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCccee---EEEccCCC
Q 001295 533 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL---TSIDADGG 609 (1106)
Q Consensus 533 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~ 609 (1106)
.+++....+..|...|.+++|++ +.+++++.||.|++||+.+++.. ..+.++
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~~-----------------------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-- 255 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFNN-----------------------GMMVTCSKDRSIAVWDMASPTDITLRRVLVGH-- 255 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECCT-----------------------TEEEEEETTSCEEEEECSSSSCCEEEEEECCC--
T ss_pred CCCcEEEEEcCCCCcEEEEEEcC-----------------------CEEEEeeCCCcEEEEeCCCCCCceeeeEecCC--
Confidence 99888888888877777777643 25999999999999999988765 444444
Q ss_pred CCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccccccccc
Q 001295 610 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS 689 (1106)
Q Consensus 610 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1106)
...|.+++| +++++++|+.||.|++||+.++ +.+..+
T Consensus 256 ~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~-~~~~~~---------------------------------------- 292 (435)
T 1p22_A 256 RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC-EFVRTL---------------------------------------- 292 (435)
T ss_dssp SSCEEEEEE--ETTEEEEEETTSEEEEEETTTC-CEEEEE----------------------------------------
T ss_pred CCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC-cEEEEE----------------------------------------
Confidence 457888888 7889999999999999998655 110000
Q ss_pred ccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEE
Q 001295 690 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 769 (1106)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 769 (1106)
T Consensus 293 -------------------------------------------------------------------------------- 292 (435)
T 1p22_A 293 -------------------------------------------------------------------------------- 292 (435)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeec
Q 001295 770 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM 848 (1106)
Q Consensus 770 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~ 848 (1106)
. .|...|.++++ +++++++|+ ||.|++||+.+++.+..+.
T Consensus 293 -----------------------------------~--~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 333 (435)
T 1p22_A 293 -----------------------------------N--GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE 333 (435)
T ss_dssp -----------------------------------E--CCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred -----------------------------------c--CCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEe
Confidence 0 15566777777 467888888 8999999999999999999
Q ss_pred CCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecce---------EEEEecCcccCeeEEEEecCCCEEEEEcCCCcEE
Q 001295 849 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLC 919 (1106)
Q Consensus 849 ~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~---------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~ 919 (1106)
+|...|.+++| ++.+|++|+.||.|++||+.+++ ++..+.+|.+.|++++| ++.+|++++.||+|+
T Consensus 334 ~h~~~v~~~~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~ 408 (435)
T 1p22_A 334 GHEELVRCIRF---DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTIL 408 (435)
T ss_dssp CCSSCEEEEEC---CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEE
T ss_pred CCcCcEEEEEe---cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEE
Confidence 99999999999 56799999999999999998876 88999999999999999 788999999999999
Q ss_pred EEeCCCcc
Q 001295 920 VWSSDGWE 927 (1106)
Q Consensus 920 vwd~~~~~ 927 (1106)
+||+.+..
T Consensus 409 iwd~~~~~ 416 (435)
T 1p22_A 409 IWDFLNDP 416 (435)
T ss_dssp EEC-----
T ss_pred EEECCCCC
Confidence 99998754
No 104
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.8e-30 Score=290.39 Aligned_cols=254 Identities=17% Similarity=0.211 Sum_probs=208.0
Q ss_pred cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCC--cceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC--
Q 001295 348 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS--RERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-- 423 (1106)
Q Consensus 348 ~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd-- 423 (1106)
+|.+.|++++|+|+|++ ||+|+.||.|+|||+.. ++.+. .+.+|...|.+++|+|+
T Consensus 9 ~h~~~v~~~~~s~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~ 68 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHPKF 68 (379)
T ss_dssp ECCCCEEEEEECSSSSE-EEEEETTSCEEEEEEETTEEEEEE-------------------EECCCSSCEEEEEECCGGG
T ss_pred CCcccEEEEEEcCCCCE-EEEEECCCcEEEEecCCCcceeee-------------------EecCCCCcEEEEEeCCCCC
Confidence 49999999999999995 99999999999999974 33332 36899999999999987
Q ss_pred CCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCC--CCceEEEEecCCCcEEEEeCCCCc--eeEEEec
Q 001295 424 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGA--KQYIFEG 499 (1106)
Q Consensus 424 g~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~ 499 (1106)
+++|++|+.||.|++||+.+++.. ....+.+|...|.+++|+|+ +. ++++++.|+.|++||+.++. ....+.+
T Consensus 69 ~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 145 (379)
T 3jrp_A 69 GTILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIIDA 145 (379)
T ss_dssp CSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCEEEEEC
T ss_pred CCEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceeeEEecC
Confidence 999999999999999999998622 33367789999999999999 78 89999999999999999873 4457788
Q ss_pred cCCCeEEEeccccC-----------CceEEEEEecCCeEEEEeCCCCCce----eEeeCCCCeeEEEEEecCCCeEEEee
Q 001295 500 HEAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLGSR----VDYEAPGRWCTTMAYSADGTRTYQGF 564 (1106)
Q Consensus 500 h~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~~~~~~ 564 (1106)
|...|.+++|++.. ++.+|++++.||.|++||++..... ..+..|...|.+++|+|++.
T Consensus 146 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~------ 219 (379)
T 3jrp_A 146 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL------ 219 (379)
T ss_dssp CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS------
T ss_pred CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC------
Confidence 99999999998742 4689999999999999999876543 23445555566665555510
Q ss_pred eccceeEEEEcCCCCEEEEEECCCeEEEEECCCcc---eeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccC
Q 001295 565 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 641 (1106)
Q Consensus 565 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 641 (1106)
.+.+|++++.||.|++||+.++. ....+....+...|.+++|+|++++|++++.||.|++|++..
T Consensus 220 ------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 220 ------------LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp ------------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred ------------CCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 04579999999999999998875 333344434556799999999999999999999999999975
Q ss_pred C
Q 001295 642 G 642 (1106)
Q Consensus 642 ~ 642 (1106)
+
T Consensus 288 ~ 288 (379)
T 3jrp_A 288 E 288 (379)
T ss_dssp T
T ss_pred C
Confidence 4
No 105
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=8.5e-30 Score=287.67 Aligned_cols=256 Identities=17% Similarity=0.203 Sum_probs=203.2
Q ss_pred Ccceeeecc-CCCCcEEEEEecC---CCeEEEEEeccCcEEEEecCC-cceeEEeeeeeeccCcCCccccccccCCCCcC
Q 001295 340 PKTVTRTLN-QGSSPMSMDFHPV---QQTLLLVGTNVGDIGLWEVGS-RERLVLRNFKVWDLGACSMPLQAALVKDPGVS 414 (1106)
Q Consensus 340 ~~~~~~~~~-h~~~v~~~~~sp~---g~~llatg~~dg~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~ 414 (1106)
+......+. |.+.|++++|+|+ |+ +|++|+.||.|+|||+.+ +..+.. .+.+|...
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h~~~ 88 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMHTGP 88 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEECSSC
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------EeccccCC
Confidence 444555554 9999999999999 47 599999999999999997 444322 36789999
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEE--cCCCCceEEEEecCCCcEEEEeCCCCc
Q 001295 415 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF--SHPNKQLCVITCGDDKTIKVWDATNGA 492 (1106)
Q Consensus 415 V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~--s~d~~~~~l~s~~~d~~i~iwd~~~~~ 492 (1106)
|.+++|+|++++|++++.||.|++||+.+++.+. +.+|...|.+++| ++++. +|++++.|+.|++||+++++
T Consensus 89 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 89 VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSSN 162 (368)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCSS
T ss_pred EEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCCc
Confidence 9999999999999999999999999999987654 5679999999999 88888 89999999999999999999
Q ss_pred eeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEee--CCCCeeEEEEEecCCCeEEEeeecccee
Q 001295 493 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE--APGRWCTTMAYSADGTRTYQGFRKRSLG 570 (1106)
Q Consensus 493 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~~~~~~~~~i~ 570 (1106)
.+..+..|. .+.++.+. . ..+++++.++.+++|+++......... .....+..+.+.++...
T Consensus 163 ~~~~~~~~~-~~~~~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 226 (368)
T 3mmy_A 163 PMMVLQLPE-RCYCADVI--Y--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN----------- 226 (368)
T ss_dssp CSEEEECSS-CEEEEEEE--T--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS-----------
T ss_pred EEEEEecCC-CceEEEec--C--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCC-----------
Confidence 999998765 56666643 3 378899999999999998765443222 12233444444433320
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCc---ceeEEEccCCCC----------CCcCeEEEccCCCEEEEEeCCCcEEEE
Q 001295 571 VVQFDTTKNRFLAAGDDFSIKFWDMDSV---QLLTSIDADGGL----------PASPRIRFNKDGCLLAVSTNDNGIKIL 637 (1106)
Q Consensus 571 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~----------~~v~~v~~s~~~~~l~~~~~dg~i~iw 637 (1106)
....+++++.|+.|++|++... ..+..+..+... ..|.+++|+|++++|++++.||.|++|
T Consensus 227 ------~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iw 300 (368)
T 3mmy_A 227 ------KPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW 300 (368)
T ss_dssp ------CEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred ------CCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEE
Confidence 0112899999999999999887 556666655321 159999999999999999999999999
Q ss_pred EccCC
Q 001295 638 ATSDG 642 (1106)
Q Consensus 638 d~~~~ 642 (1106)
|+.++
T Consensus 301 d~~~~ 305 (368)
T 3mmy_A 301 DKDAR 305 (368)
T ss_dssp ETTTT
T ss_pred ECCCC
Confidence 98876
No 106
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=1.2e-29 Score=295.07 Aligned_cols=304 Identities=12% Similarity=0.134 Sum_probs=224.1
Q ss_pred cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCc-cccccCCCCCC----------
Q 001295 742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIM-MTNDVTDSNPE---------- 810 (1106)
Q Consensus 742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~~---------- 810 (1106)
+...|.+++|+|++++|++++.||.|++|++......... ..+.. ....+.+ |.
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~-------------~~~~~~~~~~~~~--h~~~~~~~~~~~ 91 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSH-------------SRGEYNVYSTFQS--HEPEFDYLKSLE 91 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CC-------------CCCCEEEEEEEEC--CCCEEEGGGTEE
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcc-------------cccceeEeccccc--cccccccccccc
Confidence 6789999999999999999999999999998753311000 00000 1111222 65
Q ss_pred --CCeeEEEEecCC--CEEEEEe-CCeEEEEEcCCCcee---------------------------------------ee
Q 001295 811 --EAVPCFALSKND--SYVMSAS-GGKISLFNMMTFKTM---------------------------------------AT 846 (1106)
Q Consensus 811 --~~v~~l~~s~~~--~~l~~~s-dg~i~vwd~~~~~~~---------------------------------------~~ 846 (1106)
..|.+++|+|++ .+|++++ |++|++||+.++... ..
T Consensus 92 ~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
T 3dw8_B 92 IEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRI 171 (447)
T ss_dssp ECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEE
T ss_pred ccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEE
Confidence 889999999998 7888888 999999999764432 12
Q ss_pred -ecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec-ceEEE-------EecCcccCeeEEEEecCC-CEEEEEcCCC
Q 001295 847 -FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKS-------KLKGHSKRITGLAFSHAL-NVLVSSGADS 916 (1106)
Q Consensus 847 -~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~-~~~~~-------~l~~h~~~V~~l~~s~d~-~~l~s~s~Dg 916 (1106)
..+|...|++++|+| ++++|++| .||.|++||+.+ ++.+. .+.+|...|++++|+|++ .+|++++.||
T Consensus 172 ~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg 249 (447)
T 3dw8_B 172 FANAHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKG 249 (447)
T ss_dssp ECSCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTS
T ss_pred eccCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCC
Confidence 367999999999999 89999999 799999999984 44444 367899999999999998 9999999999
Q ss_pred cEEEEeCCCcccccceeecccCCCCCC---------CCCCceEEEcCCCcEEEEEeCCeEEEEecCC-ceEeeecccCCC
Q 001295 917 QLCVWSSDGWEKQKNRFLQIPTGRTPT---------AQSDTRVQFHQDQIHFLVVHETQLAIFETTK-LECVKQWVPRES 986 (1106)
Q Consensus 917 ~i~vwd~~~~~~~~~~~~~~~~~~~~~---------~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~-~~~~~~~~~~~h 986 (1106)
+|++||+.+++.... ......++... ...|.+++|+|+|++|+++.++.|++||+.+ ++++..+. +|
T Consensus 250 ~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~--~~ 326 (447)
T 3dw8_B 250 TIRLCDMRASALCDR-HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQ--VH 326 (447)
T ss_dssp CEEEEETTTCSSSCT-TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEE--SC
T ss_pred eEEEEECcCCccccc-eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceee--cc
Confidence 999999998653211 01222232210 0168999999999999997669999999997 77777765 44
Q ss_pred CCC---------------eeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCc------ccC-------------
Q 001295 987 SAP---------------ITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA------YLP------------- 1032 (1106)
Q Consensus 987 ~~~---------------v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~------~~~------------- 1032 (1106)
... +..++|+|++++|++|+.||.|++||+.+++.+....... ..+
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD 406 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence 321 3459999999999999999999999999998764221000 000
Q ss_pred -----CCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEee
Q 001295 1033 -----AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1069 (1106)
Q Consensus 1033 -----~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~ 1069 (1106)
.-.....+ +.++|+| ++++|++++.|+ +++|.-
T Consensus 407 ~~~~~~~~~~~~i--~~~~~~p-~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 407 EISVDSLDFNKKI--LHTAWHP-KENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CEEGGGCCTTSCC--CEEEECS-SSSEEEEECSSC-EEEEEC
T ss_pred cccccccccCCce--eEEEECC-CCCEEEEEecce-eeeecc
Confidence 00001123 3899999 689999988765 777763
No 107
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=3.7e-30 Score=294.13 Aligned_cols=252 Identities=15% Similarity=0.231 Sum_probs=201.9
Q ss_pred CCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc-CCCEEEE
Q 001295 351 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGV 429 (1106)
Q Consensus 351 ~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las 429 (1106)
.....++++|+...++++|+.||.|+|||+....... .....+.+|.+.|.+++|+| ++++|++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~---------------~~~~~~~~h~~~V~~~~~~p~~~~~l~s 99 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD---------------KNVPLVCGHTAPVLDIAWCPHNDNVIAS 99 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC---------------TTCCCBCCCSSCEEEEEECTTCTTEEEE
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC---------------CCCceEecCCCCEEEEEeCCCCCCEEEE
Confidence 4556799999988777788999999999996543221 01114689999999999999 9999999
Q ss_pred EeCCCeEEEEEccCCcee----eeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEE--eccCCC
Q 001295 430 AYSRHIVQIYSYHGGDEV----RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF--EGHEAP 503 (1106)
Q Consensus 430 ~~~d~~v~iwd~~~~~~~----~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~h~~~ 503 (1106)
|+.||+|+|||+.++... .....+.+|...|.+++|+|++.. +|++++.|+.|++||+.+++.+..+ .+|...
T Consensus 100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT 178 (402)
T ss_dssp EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence 999999999999987421 233468899999999999999844 7999999999999999999999999 889999
Q ss_pred eEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEe-eCCCCe-eEEEEEecCCCeEEEeeeccceeEEEEcCCCCEE
Q 001295 504 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRW-CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 581 (1106)
Q Consensus 504 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~-v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l 581 (1106)
|.+++|++ ++.+|++++.||.|++||+++......+ ..+... +..+.|+ |++.++
T Consensus 179 v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l 235 (402)
T 2aq5_A 179 IYSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFV---------------------SEGKIL 235 (402)
T ss_dssp EEEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEEC---------------------STTEEE
T ss_pred eEEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEc---------------------CCCcEE
Confidence 99999976 5579999999999999999987666555 444432 4445554 444577
Q ss_pred EEE---ECCCeEEEEECCCcce-eEEEccCCCCCCcCeEEEccCCCEEEE-EeCCCcEEEEEccCC
Q 001295 582 LAA---GDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDGCLLAV-STNDNGIKILATSDG 642 (1106)
Q Consensus 582 ~~~---~~d~~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~-~~~dg~i~iwd~~~~ 642 (1106)
++| +.|+.|++||+.+++. +..... .+...+.+++|+|++++|++ |+.||.|++||+.++
T Consensus 236 ~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~ 300 (402)
T 2aq5_A 236 TTGFSRMSERQVALWDTKHLEEPLSLQEL-DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE 300 (402)
T ss_dssp EEEECTTCCEEEEEEETTBCSSCSEEEEC-CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSS
T ss_pred EEeccCCCCceEEEEcCccccCCceEEec-cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCC
Confidence 887 6899999999988765 333322 22346899999999999975 557999999999876
No 108
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1.7e-29 Score=282.88 Aligned_cols=260 Identities=10% Similarity=0.130 Sum_probs=210.1
Q ss_pred eccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc--C
Q 001295 346 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--D 423 (1106)
Q Consensus 346 ~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp--d 423 (1106)
..+|.+.|++++|+|+|++ ||+|+.||.|+|||+.++...... ...+.+|...|.+++|+| |
T Consensus 7 ~~gH~~~v~~~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~---------------~~~~~~~~~~v~~~~~~~~~d 70 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRH-VATCSSDQHIKVFKLDKDTSNWEL---------------SDSWRAHDSSIVAIDWASPEY 70 (351)
T ss_dssp ECCCSSCEEEEEECSSSSE-EEEEETTSEEEEEEECSSSCCEEE---------------EEEEECCSSCEEEEEECCGGG
T ss_pred CcccccceeEEEEcCCCCE-EEEeeCCCeEEEEECCCCCCccee---------------cceeccCCCcEEEEEEcCCCC
Confidence 3469999999999999995 999999999999999876432210 013678999999999999 6
Q ss_pred CCEEEEEeCCCeEEEEEccCCce------eeeeeeeccccCCeeEEEEcCC--CCceEEEEecCCCcEEEEeCCCCceeE
Q 001295 424 GSLFGVAYSRHIVQIYSYHGGDE------VRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGAKQY 495 (1106)
Q Consensus 424 g~~las~~~d~~v~iwd~~~~~~------~~~~~~l~~h~~~V~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~~~~ 495 (1106)
+++|++++.||.|++||+.+++. ......+.+|...|.+++|+|+ +. ++++++.|+.|++||+.+++.+.
T Consensus 71 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~ 148 (351)
T 3f3f_A 71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLR 148 (351)
T ss_dssp CSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTT
T ss_pred CCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhc
Confidence 99999999999999999998642 1334467899999999999999 88 89999999999999999887654
Q ss_pred EEe-------------ccCCCeEEEecccc-CCceEEEEEecCCeEEEEeCCCCCc--eeEeeCCCCeeEEEEEecCCCe
Q 001295 496 IFE-------------GHEAPVYSVCPHHK-ENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTR 559 (1106)
Q Consensus 496 ~~~-------------~h~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~ 559 (1106)
.+. +|...+.+++|++. .++.++++++.|+.+.+|+...... ...+..|...|.+++|+|++.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~ 228 (351)
T 3f3f_A 149 SWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGR 228 (351)
T ss_dssp CCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSC
T ss_pred cccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCC
Confidence 433 68889999999875 1347999999999998888776554 3445566666777766666510
Q ss_pred EEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCc-----------------------------------------
Q 001295 560 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV----------------------------------------- 598 (1106)
Q Consensus 560 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----------------------------------------- 598 (1106)
.+++|++++.||.|++||+.++
T Consensus 229 -----------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (351)
T 3f3f_A 229 -----------------WYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQ 291 (351)
T ss_dssp -----------------SSEEEEEEETTSCEEEEEEEECC---------------------------------------C
T ss_pred -----------------cceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeec
Confidence 0037999999999999999764
Q ss_pred -----ceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 599 -----QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 599 -----~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
+.+..+..| ...|.+++|+|++++|++++.||.|++|++.++
T Consensus 292 ~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 292 SNLQVELLSEHDDH--NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp CSEEEEEEEEECTT--SSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred ccccccEEEEEecc--cccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 455556555 457999999999999999999999999999876
No 109
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=4.5e-29 Score=285.10 Aligned_cols=287 Identities=15% Similarity=0.128 Sum_probs=226.7
Q ss_pred EEEEEcCCCceEEE-eecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEec-CCCE
Q 001295 747 SRLIFTNSGNAILA-LASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSY 824 (1106)
Q Consensus 747 ~~~~~s~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~ 824 (1106)
..++++|+...+++ ++.+|.|++|++....... . ....+. +|...|++++|+| ++++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~------------------~-~~~~~~--~h~~~V~~~~~~p~~~~~ 96 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD------------------K-NVPLVC--GHTAPVLDIAWCPHNDNV 96 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC------------------T-TCCCBC--CCSSCEEEEEECTTCTTE
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC------------------C-CCceEe--cCCCCEEEEEeCCCCCCE
Confidence 35788888765554 6779999999975321100 0 000122 3899999999999 9999
Q ss_pred EEEEe-CCeEEEEEcCCC-------ceeeeecCCCCCeeEEEEecCCC-ceEEEeeCCCcEEEEEeecceEEEEe--cCc
Q 001295 825 VMSAS-GGKISLFNMMTF-------KTMATFMPPPPAATFLAFHPQDN-NIIAIGMDDSSIQIYNVRVDEVKSKL--KGH 893 (1106)
Q Consensus 825 l~~~s-dg~i~vwd~~~~-------~~~~~~~~~~~~v~~l~~s~~d~-~~la~g~~dg~v~iwd~~~~~~~~~l--~~h 893 (1106)
|++++ ||+|++||+.++ +.+..+.+|...|.+++|+| ++ ++|++|+.||.|++||+.+++.+..+ .+|
T Consensus 97 l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 175 (402)
T 2aq5_A 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHP-TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH 175 (402)
T ss_dssp EEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECS-SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTC
T ss_pred EEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECc-CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCC
Confidence 99999 899999999987 56788899999999999999 65 79999999999999999999999999 889
Q ss_pred ccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeccc-CCCCCCCCCCceEEEcCCCcEEEEE----eCCeEE
Q 001295 894 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP-TGRTPTAQSDTRVQFHQDQIHFLVV----HETQLA 968 (1106)
Q Consensus 894 ~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~s~dg~~l~~~----~d~~v~ 968 (1106)
...|++++|+|++.+|++++.|+.|++||+.+++. +... .+|.. ..+..++|+|++++|+++ .|+.|+
T Consensus 176 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~~~l~~g~~~~~d~~i~ 248 (402)
T 2aq5_A 176 PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTV-----VAEKDRPHEG--TRPVHAVFVSEGKILTTGFSRMSERQVA 248 (402)
T ss_dssp CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE-----EEEEECSSCS--SSCCEEEECSTTEEEEEEECTTCCEEEE
T ss_pred CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCce-----eeeeccCCCC--CcceEEEEcCCCcEEEEeccCCCCceEE
Confidence 99999999999999999999999999999998653 2222 33332 247899999999999997 689999
Q ss_pred EEecCCceEeeecccCCCCCCeeEEEECCCCCEEEE-EEcCCeEEEEEcCCcee-EEeeCCCcccCCCCCCCCccceEEE
Q 001295 969 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYA-CFLDATVCVFSAANLKL-RCRINPSAYLPAGVSSSNVHPLVIA 1046 (1106)
Q Consensus 969 i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t-~s~Dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~ 1046 (1106)
+||+.+++.........|...|.+++|+|++++|++ |+.||.|++||+.+++. +..+.. .. +...+. .++
T Consensus 249 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~---~~---~~~~v~--~~~ 320 (402)
T 2aq5_A 249 LWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSM---FS---SKESQR--GMG 320 (402)
T ss_dssp EEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEE---EC---CSSCCS--EEE
T ss_pred EEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecc---cc---cCCccc--ceE
Confidence 999998765222222356788999999999999865 55799999999999874 333331 01 123355 899
Q ss_pred EeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295 1047 AHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus 1047 ~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
|+| ++.++++ .|+.+++|++.+++
T Consensus 321 ~sp-~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 321 YMP-KRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp ECC-GGGSCGG--GTEEEEEEEEETTE
T ss_pred Eec-cccccee--cceeEEEEEcCCCc
Confidence 999 6777664 57799999999865
No 110
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.4e-29 Score=281.28 Aligned_cols=250 Identities=12% Similarity=0.076 Sum_probs=207.9
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEEEcC--CCceeeeecCCCCCeeEEEEecCC--CceEEEeeCCCcEEEEEeec
Q 001295 809 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQD--NNIIAIGMDDSSIQIYNVRV 883 (1106)
Q Consensus 809 ~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~--~~~~~~~~~~~~~~v~~l~~s~~d--~~~la~g~~dg~v~iwd~~~ 883 (1106)
|...|++++|+|++++|++++ ||.|++||+. +++.+..+.+|...|++++|++ + +++|++|+.||.|++||+.+
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~v~iwd~~~ 88 (379)
T 3jrp_A 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIWKEEN 88 (379)
T ss_dssp CCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSCEEEEEEET
T ss_pred CcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCC-CCCCCEEEEeccCCEEEEEEcCC
Confidence 999999999999999999998 8999999998 6677788999999999999997 5 89999999999999999999
Q ss_pred ce--EEEEecCcccCeeEEEEecC--CCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcC-----
Q 001295 884 DE--VKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ----- 954 (1106)
Q Consensus 884 ~~--~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~----- 954 (1106)
++ .+..+.+|...|++++|+|+ +.+|++++.|+.|++||+.+........ ..+|. ..+.+++|+|
T Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~---~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII---IDAHA---IGVNSASWAPATIEE 162 (379)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE---EECCT---TCEEEEEECCCC---
T ss_pred CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE---ecCCC---CceEEEEEcCccccc
Confidence 87 77888999999999999999 9999999999999999998864433222 22333 3789999999
Q ss_pred --------CCcEEEE-EeCCeEEEEecCCce----EeeecccCCCCCCeeEEEECCC---CCEEEEEEcCCeEEEEEcCC
Q 001295 955 --------DQIHFLV-VHETQLAIFETTKLE----CVKQWVPRESSAPITHATFSCD---SQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus 955 --------dg~~l~~-~~d~~v~i~d~~~~~----~~~~~~~~~h~~~v~~l~~s~d---~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
++.++++ +.|+.|++||++++. .+..+ .+|...|++++|+|+ +.+|++++.||.|++||+.+
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL--EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEE--CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEE--ecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 6899988 589999999998764 33333 478999999999999 89999999999999999998
Q ss_pred ceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295 1019 LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus 1019 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
+......... ...+| ...+. .++|+| |+++|++++.||.|++|++..+.
T Consensus 241 ~~~~~~~~~~--~~~~~-~~~v~--~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 241 EQGPWKKTLL--KEEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp TTSCCEEEES--SSSCC-SSCEE--EEEECS-SSCCEEEEESSSSEEEEEEEETT
T ss_pred CCccceeeee--ccccC-CCcEE--EEEEcC-CCCEEEEecCCCcEEEEeCCCCC
Confidence 7421111100 11111 23355 899999 78999999999999999998543
No 111
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=5.5e-28 Score=253.76 Aligned_cols=293 Identities=14% Similarity=0.119 Sum_probs=210.5
Q ss_pred eeEEEEc-CCCCceEEEEecCCCcEEEEeCCCC---ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCC
Q 001295 460 VNDIAFS-HPNKQLCVITCGDDKTIKVWDATNG---AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL 535 (1106)
Q Consensus 460 V~~~~~s-~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 535 (1106)
+.++-|- +..+.+.++++++ ..|++|+..++ +.++++.+|..+|..+.+.++..+-+.++-+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------- 107 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------------- 107 (356)
T ss_dssp EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC-------------
T ss_pred EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec-------------
Confidence 5566663 3445545677764 68999999999 8999999999999999988765432222222
Q ss_pred CceeEeeCCCCeeEEEEEecC----CCeEEEeeeccceeEEEEcCCCCEEEEEE--CCCeEEEEEC-CCcceeEEEccCC
Q 001295 536 GSRVDYEAPGRWCTTMAYSAD----GTRTYQGFRKRSLGVVQFDTTKNRFLAAG--DDFSIKFWDM-DSVQLLTSIDADG 608 (1106)
Q Consensus 536 ~~~~~~~~~~~~v~~~~~s~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~iwd~-~~~~~~~~~~~~~ 608 (1106)
..+...|.+++++|| ++.+..+.+...+.. + ++++.+.+++ .|+.|++|++ .+|+.+..+..+.
T Consensus 108 ------~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~--l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~ 178 (356)
T 2w18_A 108 ------NLEIREIRALFCSSDDESEKQVLLKSGNIKAVLG--L-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMP 178 (356)
T ss_dssp ------SSSEEEEEEECC------CCEEEEEEEEEEEEEE--E-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECC
T ss_pred ------cccccceEEEEECCCccccccEEEeCCCeEEEEe--c-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCC
Confidence 223456889999999 877777665544444 3 5565555533 5999999999 5588888887774
Q ss_pred CCCCcCeEEEcc---CCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccccc
Q 001295 609 GLPASPRIRFNK---DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD 685 (1106)
Q Consensus 609 ~~~~v~~v~~s~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1106)
. .+..++|++ ++.+|++++.|++|+|||+.++ ++++.+.+|..
T Consensus 179 ~--~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~------------------------------- 224 (356)
T 2w18_A 179 P--EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDDS------------------------------- 224 (356)
T ss_dssp C--SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC--------------------------------
T ss_pred C--ceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCCc-------------------------------
Confidence 4 788899999 7899999999999999999998 55554432211
Q ss_pred ccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCc
Q 001295 686 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA 765 (1106)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 765 (1106)
+...+.+++|+|+|.++++++.+.
T Consensus 225 --------------------------------------------------------~v~~v~~vafSpdG~~lvs~s~~~ 248 (356)
T 2w18_A 225 --------------------------------------------------------YQASVCHKAYSEMGLLFIVLSHPC 248 (356)
T ss_dssp ----------------------------------------------------------CCCEEEEEEETTEEEEEEC---
T ss_pred --------------------------------------------------------ceeeeEEEEECCCCCEEEEeccCC
Confidence 223577889999998777665431
Q ss_pred eEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCcee
Q 001295 766 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM 844 (1106)
Q Consensus 766 ~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~ 844 (1106)
. +| .+++|+ |++|++||..+++.+
T Consensus 249 ~--~w-----------------------------------------------------~laSGs~D~tIklWd~~tgk~l 273 (356)
T 2w18_A 249 A--KE-----------------------------------------------------SESLRSPVFQLIVINPKTTLSV 273 (356)
T ss_dssp ----------------------------------------------------------------CCEEEEEEETTTTEEE
T ss_pred C--cc-----------------------------------------------------eeeccCCCcEEEEEECCCCEEE
Confidence 1 11 356777 899999999999887
Q ss_pred eee-----cCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCee-EEEEecCCCEEEEEcCCCcE
Q 001295 845 ATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT-GLAFSHALNVLVSSGADSQL 918 (1106)
Q Consensus 845 ~~~-----~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~-~l~~s~d~~~l~s~s~Dg~i 918 (1106)
..+ .+|...+.+..+ ++.++|+|+.||+|+|||+.+++++.++.+|...+. +++|||||++|+||+.|++|
T Consensus 274 ~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TI 350 (356)
T 2w18_A 274 GVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNI 350 (356)
T ss_dssp EEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCE
T ss_pred EEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcE
Confidence 665 366655444444 367999999999999999999999999999988766 58999999999999999999
Q ss_pred EEEeC
Q 001295 919 CVWSS 923 (1106)
Q Consensus 919 ~vwd~ 923 (1106)
+|||+
T Consensus 351 klWd~ 355 (356)
T 2w18_A 351 FVYHY 355 (356)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 99986
No 112
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=1.2e-28 Score=283.64 Aligned_cols=267 Identities=13% Similarity=0.227 Sum_probs=213.4
Q ss_pred eeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc
Q 001295 343 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 422 (1106)
Q Consensus 343 ~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 422 (1106)
....+.|.+.|++++|+|++..+||+|+.||.|+|||+.+...... ..........+.+|...|.+++|+|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------~~~~~~~~~~~~~h~~~v~~l~~~~ 191 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---------PSGECQPDLRLRGHQKEGYGLSWNP 191 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---------TTCCCCCSEEEECCSSCCCCEEECT
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---------ccccCCCcEEecCCCCCeEEEEeCC
Confidence 4566779999999999998555799999999999999976211000 0000001113679999999999999
Q ss_pred CCC-EEEEEeCCCeEEEEEccCCce----eeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC---cee
Q 001295 423 DGS-LFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AKQ 494 (1106)
Q Consensus 423 dg~-~las~~~d~~v~iwd~~~~~~----~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~ 494 (1106)
++. +|++|+.||.|++||+.++.. +.....+.+|...|.+++|+|++.. +|++++.|+.|++||++++ +.+
T Consensus 192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCS
T ss_pred CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcce
Confidence 998 999999999999999987432 2224467789999999999995544 8999999999999999987 678
Q ss_pred EEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCC-CceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEE
Q 001295 495 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 573 (1106)
Q Consensus 495 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 573 (1106)
..+..|...|++++|++... .++++|+.||.|++||++.. .....+..|...|.+++|+|+++
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~--------------- 334 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE--------------- 334 (430)
T ss_dssp EEEECCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCT---------------
T ss_pred eEeecCCCCeEEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCC---------------
Confidence 88889999999999977543 47999999999999999984 45667777777777777777664
Q ss_pred EcCCCCEEEEEECCCeEEEEECCC--------------cceeEEEccCCCCCCcCeEEEccCCC-EEEEEeCCCcEEEEE
Q 001295 574 FDTTKNRFLAAGDDFSIKFWDMDS--------------VQLLTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILA 638 (1106)
Q Consensus 574 ~~~~~~~l~~~~~d~~i~iwd~~~--------------~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd 638 (1106)
.++++++.|+.|++||+.. .+.+..+.+| ...|.+++|+|++. +|++++.||.|++|+
T Consensus 335 -----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 335 -----TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp -----TEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred -----CEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 2588999999999999976 2455555544 45799999999999 999999999999999
Q ss_pred ccCC
Q 001295 639 TSDG 642 (1106)
Q Consensus 639 ~~~~ 642 (1106)
+...
T Consensus 408 ~~~~ 411 (430)
T 2xyi_A 408 MAEN 411 (430)
T ss_dssp ECHH
T ss_pred cccc
Confidence 8654
No 113
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=7.1e-28 Score=278.63 Aligned_cols=356 Identities=15% Similarity=0.206 Sum_probs=256.0
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEE---EccCCC
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI---WSPDGS 425 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~---~spdg~ 425 (1106)
....|..+.|+|....++..+......+++... ....+..++ |+|+++
T Consensus 26 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~g~~~~~~p~~~~~~~ 76 (433)
T 3bws_A 26 NGTEIVKFSIHPYKGTVIRLGEEILPFKVLEMD-----------------------------KNIALVEMAIPVYKDEKE 76 (433)
T ss_dssp -CEEEEEEEEECCTTCEEEETTEECCEEEEEEE-----------------------------TTEEEEEEEEECCCTTCC
T ss_pred CCcEEEEEecccccCceEEcCceecceeeeecc-----------------------------cCCccEEEEEeeccCCCc
Confidence 456788899999765444432222222232221 223455555 666655
Q ss_pred EEEEE--------------eCCCeEEEEEcc--CCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCC
Q 001295 426 LFGVA--------------YSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 489 (1106)
Q Consensus 426 ~las~--------------~~d~~v~iwd~~--~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~ 489 (1106)
.++.. +.++.+.||.++ ++. ......+..+ ..+.+++|+|++. ++++++.|+.|++||+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~-~~~~~~~~s~~~~--~~~~~~~~~~i~~~d~~ 152 (433)
T 3bws_A 77 IELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGIT-HRFISRFKTG-FQPKSVRFIDNTR--LAIPLLEDEGMDVLDIN 152 (433)
T ss_dssp EEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCS-EEEEEEEECS-SCBCCCEESSSSE--EEEEBTTSSSEEEEETT
T ss_pred EEEEEEccccCcceeeecccCCCceEEEEECCCCCc-ceEEEEEcCC-CCceEEEEeCCCe--EEEEeCCCCeEEEEECC
Confidence 55433 333433555543 342 2222344444 4567999999665 78889999999999999
Q ss_pred CCceeE-----EEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEee
Q 001295 490 NGAKQY-----IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 564 (1106)
Q Consensus 490 ~~~~~~-----~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~ 564 (1106)
+++.+. .+.+|...|.+++|++ ++.++++++.|+.|++||+++.+....+..+...+.+++|+|+++
T Consensus 153 ~g~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 224 (433)
T 3bws_A 153 SGQTVRLSPPEKYKKKLGFVETISIPE--HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRD------ 224 (433)
T ss_dssp TCCEEEECCCHHHHTTCCEEEEEEEGG--GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTT------
T ss_pred CCeEeeecCcccccccCCceeEEEEcC--CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCC------
Confidence 999887 4457889999999854 458999999999999999998877777777777777777777665
Q ss_pred eccceeEEEEcCCCCEEE-EEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEe--------CCCcEE
Q 001295 565 RKRSLGVVQFDTTKNRFL-AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST--------NDNGIK 635 (1106)
Q Consensus 565 ~~~~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~--------~dg~i~ 635 (1106)
+++ +++.++.|++||+.+++.+..+..+. .+.+++|+|+++++++++ .||.|+
T Consensus 225 ---------------~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~ 286 (433)
T 3bws_A 225 ---------------LVYCSNWISEDISVIDRKTKLEIRKTDKIG---LPRGLLLSKDGKELYIAQFSASNQESGGGRLG 286 (433)
T ss_dssp ---------------EEEEEETTTTEEEEEETTTTEEEEECCCCS---EEEEEEECTTSSEEEEEEEESCTTCSCCEEEE
T ss_pred ---------------EEEEEecCCCcEEEEECCCCcEEEEecCCC---CceEEEEcCCCCEEEEEECCCCccccCCCeEE
Confidence 564 45579999999999999888876543 488999999999999887 356666
Q ss_pred EEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCC
Q 001295 636 ILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN 715 (1106)
Q Consensus 636 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 715 (1106)
+||+.++. ....
T Consensus 287 ~~d~~~~~-~~~~------------------------------------------------------------------- 298 (433)
T 3bws_A 287 IYSMDKEK-LIDT------------------------------------------------------------------- 298 (433)
T ss_dssp EEETTTTE-EEEE-------------------------------------------------------------------
T ss_pred EEECCCCc-EEee-------------------------------------------------------------------
Confidence 66654431 0000
Q ss_pred CceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCC
Q 001295 716 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 795 (1106)
Q Consensus 716 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~ 795 (1106)
+
T Consensus 299 ------------------------------------------~------------------------------------- 299 (433)
T 3bws_A 299 ------------------------------------------I------------------------------------- 299 (433)
T ss_dssp ------------------------------------------E-------------------------------------
T ss_pred ------------------------------------------c-------------------------------------
Confidence 0
Q ss_pred CCCccccccCCCCCCCCeeEEEEecCCCEEEEE-e-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeC-
Q 001295 796 SGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD- 872 (1106)
Q Consensus 796 ~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~-s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~- 872 (1106)
.+...+.+++|+|+++.++++ + ++.|++||+.+++....+. +...+.+++|+| ++++|++++.
T Consensus 300 ------------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dg~~l~~~~~~ 365 (433)
T 3bws_A 300 ------------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSP-DGKYLYVSCRG 365 (433)
T ss_dssp ------------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECT-TSSEEEEEECC
T ss_pred ------------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcC-CCCEEEEEecC
Confidence 022245677888888755444 4 7899999999888877776 667799999999 8888888776
Q ss_pred --------------CCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcC-CCcEEEEeCCC
Q 001295 873 --------------DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDG 925 (1106)
Q Consensus 873 --------------dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~ 925 (1106)
||.|++||+.+++.+..+..+ ..+.+++|+|||++|++++. |++|++|+++.
T Consensus 366 ~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 366 PNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred CCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 579999999999998888764 57899999999999988775 99999999864
No 114
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=5.6e-27 Score=266.97 Aligned_cols=329 Identities=9% Similarity=0.099 Sum_probs=243.3
Q ss_pred CEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCe
Q 001295 425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 504 (1106)
Q Consensus 425 ~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 504 (1106)
.++++++.|+.|++||+.+++.+. .+..|. .+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..+. .+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~---~~~~~~-~~~~~~~s~dg~~-l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v 76 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTA---TIPVGS-NPMGAVISPDGTK-VYVANAHSNDVSIIDTATNNVIATVPAGS-SP 76 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEE---EEECSS-SEEEEEECTTSSE-EEEEEGGGTEEEEEETTTTEEEEEEECSS-SE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEE---EeecCC-CcceEEECCCCCE-EEEECCCCCeEEEEECCCCeEEEEEECCC-Cc
Confidence 467888999999999999987665 455554 5899999999994 45788899999999999999999888665 89
Q ss_pred EEEeccccCCceEE-EEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEE-E
Q 001295 505 YSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF-L 582 (1106)
Q Consensus 505 ~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l-~ 582 (1106)
.+++|+++. ++| ++++.++.|++||+.+.+....+..+ ..+.+++|+|+ ++++ +
T Consensus 77 ~~~~~spdg--~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~d---------------------g~~l~~ 132 (391)
T 1l0q_A 77 QGVAVSPDG--KQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPD---------------------GKKLYV 132 (391)
T ss_dssp EEEEECTTS--SEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTT---------------------SSEEEE
T ss_pred cceEECCCC--CEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCC---------------------CCEEEE
Confidence 999987644 555 56667899999999986655544433 23445555554 4456 6
Q ss_pred EEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEE-EEEeCCCcEEEEEccCCchhhhhhcccccccccCCC
Q 001295 583 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE 661 (1106)
Q Consensus 583 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 661 (1106)
+++.++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.++.|++||+.++. ....+
T Consensus 133 ~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~------------ 196 (391)
T 1l0q_A 133 TNNGDKTVSVINTVTKAVINTVSVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS-VIDTV------------ 196 (391)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEE------------
T ss_pred EeCCCCEEEEEECCCCcEEEEEecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCe-EEEEE------------
Confidence 77789999999999999988887653 36899999999887 567788999999986551 00000
Q ss_pred CCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccc
Q 001295 662 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 741 (1106)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 741 (1106)
T Consensus 197 -------------------------------------------------------------------------------- 196 (391)
T 1l0q_A 197 -------------------------------------------------------------------------------- 196 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295 742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 821 (1106)
Q Consensus 742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 821 (1106)
.+...+.+++|+|+
T Consensus 197 ------------------------------------------------------------------~~~~~~~~~~~~~~ 210 (391)
T 1l0q_A 197 ------------------------------------------------------------------KVEAAPSGIAVNPE 210 (391)
T ss_dssp ------------------------------------------------------------------ECSSEEEEEEECTT
T ss_pred ------------------------------------------------------------------ecCCCccceEECCC
Confidence 02233556777777
Q ss_pred CCEEEEEe----CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceE-EEeeCCCcEEEEEeecceEEEEecCcccC
Q 001295 822 DSYVMSAS----GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII-AIGMDDSSIQIYNVRVDEVKSKLKGHSKR 896 (1106)
Q Consensus 822 ~~~l~~~s----dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~l-a~g~~dg~v~iwd~~~~~~~~~l~~h~~~ 896 (1106)
++++++++ ++.|++||+.+++.+..+..+. .+.+++|+| ++++| ++++.|+.|++||+.+++++..+..|..+
T Consensus 211 g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~ 288 (391)
T 1l0q_A 211 GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNP 288 (391)
T ss_dssp SSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred CCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCC
Confidence 77666664 5789999998888888887654 589999999 77665 67788999999999999999888776554
Q ss_pred ee---EEE------------EecCC----------CEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEE
Q 001295 897 IT---GLA------------FSHAL----------NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 951 (1106)
Q Consensus 897 V~---~l~------------~s~d~----------~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 951 (1106)
.. .+. |+.+. ..+.+.+.|.++++|++..+... .. ......
T Consensus 289 ~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~------~~--------~~~~~~ 354 (391)
T 1l0q_A 289 YASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS------KK--------QNPTHT 354 (391)
T ss_dssp ECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE------CS--------SSCEEC
T ss_pred CccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCccc------Cc--------CCCeEE
Confidence 22 122 32221 34666777899999999875421 00 123468
Q ss_pred EcCCCcEEEE
Q 001295 952 FHQDQIHFLV 961 (1106)
Q Consensus 952 ~s~dg~~l~~ 961 (1106)
|+++|.|.+.
T Consensus 355 ~~~~g~y~~~ 364 (391)
T 1l0q_A 355 YSETGIYTVR 364 (391)
T ss_dssp CSSCEEEEEE
T ss_pred eCCCceEEEE
Confidence 9999999876
No 115
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=5e-27 Score=267.37 Aligned_cols=227 Identities=15% Similarity=0.129 Sum_probs=179.7
Q ss_pred CeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEE-EEEeCCCeEEEEEc
Q 001295 363 QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF-GVAYSRHIVQIYSY 441 (1106)
Q Consensus 363 ~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~d~~v~iwd~ 441 (1106)
++++++++.|+.|++||+.+++.+.. +..|. .+.+++|+|+|++| ++++.|+.|++||+
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~ 61 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTAT-------------------IPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDT 61 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEE-------------------EECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEET
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEE-------------------eecCC-CcceEEECCCCCEEEEECCCCCeEEEEEC
Confidence 35799999999999999999887653 34454 58999999999987 56778999999999
Q ss_pred cCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEE-EE
Q 001295 442 HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI-FS 520 (1106)
Q Consensus 442 ~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s 520 (1106)
.+++.+. .+..|. .+.+++|+|+++. ++++++.++.|++||+.+++.+..+..| ..+.+++|+++. +.+ ++
T Consensus 62 ~~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg--~~l~~~ 133 (391)
T 1l0q_A 62 ATNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDG--KKLYVT 133 (391)
T ss_dssp TTTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTS--SEEEEE
T ss_pred CCCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCC--CEEEEE
Confidence 9988765 344343 8999999999994 4467778899999999999998888754 568899986554 555 78
Q ss_pred EecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEE-EEEECCCeEEEEECCCcc
Q 001295 521 TALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF-LAAGDDFSIKFWDMDSVQ 599 (1106)
Q Consensus 521 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~ 599 (1106)
++.|+.|++||+.+.+....+..+. .+..++|+|+ ++++ ++++.++.|++||+.+++
T Consensus 134 ~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~d---------------------g~~l~~~~~~~~~v~~~d~~~~~ 191 (391)
T 1l0q_A 134 NNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPD---------------------GTKVYVANFDSMSISVIDTVTNS 191 (391)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTT---------------------SSEEEEEETTTTEEEEEETTTTE
T ss_pred eCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCC---------------------CCEEEEEeCCCCEEEEEECCCCe
Confidence 8889999999998776555554432 2344555554 4456 567788999999999998
Q ss_pred eeEEEccCCCCCCcCeEEEccCCCEEEEEe---CCCcEEEEEccCC
Q 001295 600 LLTSIDADGGLPASPRIRFNKDGCLLAVST---NDNGIKILATSDG 642 (1106)
Q Consensus 600 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~---~dg~i~iwd~~~~ 642 (1106)
.+..+..+ ..+.+++|+|+++++++++ .++.|++||+.++
T Consensus 192 ~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 192 VIDTVKVE---AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp EEEEEECS---SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred EEEEEecC---CCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 88887643 2578999999999999888 6899999998765
No 116
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.6e-28 Score=278.26 Aligned_cols=257 Identities=16% Similarity=0.080 Sum_probs=201.9
Q ss_pred CCcEEEEEecCCCeEEEEEeccCcEEEEecCCcc---eeEEeeeeeeccCcC----------------------------
Q 001295 351 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE---RLVLRNFKVWDLGAC---------------------------- 399 (1106)
Q Consensus 351 ~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~---~~~~~~~~~~d~~~~---------------------------- 399 (1106)
.++.+++|+|||+ +|+++ .++.|++||+.+|+ .+.. |.....
T Consensus 5 ~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (450)
T 2vdu_B 5 HPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGK-----WSDDFDKIQESRNTTAKEQQGQSSENENENKKLK 77 (450)
T ss_dssp CCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEE-----EECCC-----------------------------
T ss_pred ccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeee-----cCCccccccccccccchhhccccccccccccccc
Confidence 5789999999999 46554 47899999999998 4332 211000
Q ss_pred ------------CccccccccCCCCcCeEEEEEccCCCEE-EEEeCCCeEEEEEcc--CCceeeeeeeeccccCCeeEEE
Q 001295 400 ------------SMPLQAALVKDPGVSVNRVIWSPDGSLF-GVAYSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDIA 464 (1106)
Q Consensus 400 ------------~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~d~~v~iwd~~--~~~~~~~~~~l~~h~~~V~~~~ 464 (1106)
..........+|.+.|.+++|+|+|++| ++++.||.|+|||+. +++.+..+. ...|...|.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~ 156 (450)
T 2vdu_B 78 SNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAIS 156 (450)
T ss_dssp ----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEE
T ss_pred cCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEE
Confidence 0000111234677789999999999996 889999999999999 777665322 136778999999
Q ss_pred EcCCCCceEEEEecCCCcEEEEeCCCCceeE----EEeccCCCeEEEecccc-CCceEEEEEecCCeEEEEeCCCCCcee
Q 001295 465 FSHPNKQLCVITCGDDKTIKVWDATNGAKQY----IFEGHEAPVYSVCPHHK-ENIQFIFSTALDGKIKAWLYDNLGSRV 539 (1106)
Q Consensus 465 ~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~~h~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~ 539 (1106)
|+|+++ +|++|+.|+.|++|++.+++... .+.+|...|.+++|+++ ..+.+|++|+.|+.|++||+++.....
T Consensus 157 ~sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 157 IAEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD 234 (450)
T ss_dssp ECTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred EcCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence 999999 89999999999999998877554 78889999999999876 225799999999999999999877766
Q ss_pred E-eeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccC-----------
Q 001295 540 D-YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD----------- 607 (1106)
Q Consensus 540 ~-~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----------- 607 (1106)
. +..|...|.+++|+ +++ +|++++.|+.|++||+.+++.+..+..+
T Consensus 235 ~~~~~h~~~v~~~~~s-d~~---------------------~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (450)
T 2vdu_B 235 KWLFGHKHFVSSICCG-KDY---------------------LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQH 292 (450)
T ss_dssp EECCCCSSCEEEEEEC-STT---------------------EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTS
T ss_pred eeecCCCCceEEEEEC-CCC---------------------EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcc
Confidence 5 44666667777666 554 7999999999999999999988887532
Q ss_pred ------------CCCCCcCeEEEccCCCEEEEEe-CCCcEEEEEc
Q 001295 608 ------------GGLPASPRIRFNKDGCLLAVST-NDNGIKILAT 639 (1106)
Q Consensus 608 ------------~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~ 639 (1106)
.....|.+++|+|++++|++++ .++.|++|++
T Consensus 293 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 293 LAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp BC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred cccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 1123578999999999999999 8999999998
No 117
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=7.1e-28 Score=252.90 Aligned_cols=277 Identities=11% Similarity=0.144 Sum_probs=204.6
Q ss_pred CccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccc
Q 001295 707 KPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATAS 786 (1106)
Q Consensus 707 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 786 (1106)
+..+.......|++|+......-.....+ ..|+.+|..+.+.||..-|++..-..
T Consensus 54 ~~~~~~~~~~~v~lw~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~--------------------- 108 (356)
T 2w18_A 54 EPCIITACEDVVSLWKALDAWQWEKLYTW----HFAEVPVLQIVPVPDVYNLVCVALGN--------------------- 108 (356)
T ss_dssp EEEEEEEESSEEEEEEESSSSBEEEEEEE----ECCSSCEEEECCCTTCCSCEEEEECS---------------------
T ss_pred ccEEEEeccceEEEcccCCCccceeeEEE----eccCceeEEEEEcCcccceeeeeecc---------------------
Confidence 34455566689999999875322333333 34778999999999876555443220
Q ss_pred cCccccCCCCCCccccccCCCCCCCCeeEEEEecC----CCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecC
Q 001295 787 VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN----DSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ 862 (1106)
Q Consensus 787 ~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~----~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~ 862 (1106)
-+...|.+++++|| ++++++++ ..+++|++.
T Consensus 109 ---------------------~~~~~v~sla~spd~~~~~~~l~s~g-~~~~v~~l~----------------------- 143 (356)
T 2w18_A 109 ---------------------LEIREIRALFCSSDDESEKQVLLKSG-NIKAVLGLT----------------------- 143 (356)
T ss_dssp ---------------------SSEEEEEEECC------CCEEEEEEE-EEEEEEEET-----------------------
T ss_pred ---------------------ccccceEEEEECCCccccccEEEeCC-CeEEEEecC-----------------------
Confidence 15667899999999 99999876 347778542
Q ss_pred CCceEEEee--CCCcEEEEEee-cceEEEEecCcccCeeEEEEec---CCCEEEEEcCCCcEEEEeCCCcccccceeecc
Q 001295 863 DNNIIAIGM--DDSSIQIYNVR-VDEVKSKLKGHSKRITGLAFSH---ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQI 936 (1106)
Q Consensus 863 d~~~la~g~--~dg~v~iwd~~-~~~~~~~l~~h~~~V~~l~~s~---d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~ 936 (1106)
+++++.+++ .|+.|++|++. +|+.+..+.+|...++.++|++ ++.+|||++.|++|+|||+++++. +..
T Consensus 144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~-----l~t 218 (356)
T 2w18_A 144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQL-----LKK 218 (356)
T ss_dssp TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCE-----EEE
T ss_pred CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcE-----EEE
Confidence 455555533 57888888884 4777778889999999999999 789999999999999999999764 333
Q ss_pred cCCCCCCCCCCceEEEcCCCcEEEE-------------EeCCeEEEEecCCceEeeecc---cCCCCCCeeEEEECCCCC
Q 001295 937 PTGRTPTAQSDTRVQFHQDQIHFLV-------------VHETQLAIFETTKLECVKQWV---PRESSAPITHATFSCDSQ 1000 (1106)
Q Consensus 937 ~~~~~~~~~~i~~~~~s~dg~~l~~-------------~~d~~v~i~d~~~~~~~~~~~---~~~h~~~v~~l~~s~d~~ 1000 (1106)
+.++......+.+++|+|||+++++ +.|++|++||..+++++..+. ..+|...+.+..++ +.
T Consensus 219 L~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~ 296 (356)
T 2w18_A 219 MHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DH 296 (356)
T ss_dssp EECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TT
T ss_pred EcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CC
Confidence 3333222246778899999998743 367899999999999876652 34776666655554 88
Q ss_pred EEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeec
Q 001295 1001 LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1070 (1106)
Q Consensus 1001 ~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~ 1070 (1106)
++|+|+.|++|+|||+.+++.+..+. +|+...+. .++|+| ||++|++|+.|++|+|||+.
T Consensus 297 ~lASgS~DgTIkIWDl~tGk~l~tL~-------gH~~~vvs--~vafSP-DG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 297 CAAAILTSGTIAIWDLLLGQCTALLP-------PVSDQHWS--FVKWSG-TDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp EEEEEETTSCEEEEETTTCSEEEEEC-------CC--CCCC--EEEECS-SSSEEEEECTTSCEEEEEEC
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEec-------CCCCCeEE--EEEECC-CCCEEEEEECCCcEEEecCC
Confidence 99999999999999999999999887 44444344 589999 79999999999999999963
No 118
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.2e-28 Score=301.47 Aligned_cols=255 Identities=16% Similarity=0.204 Sum_probs=206.6
Q ss_pred ccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCc--ceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC-
Q 001295 347 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD- 423 (1106)
Q Consensus 347 ~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd- 423 (1106)
-+|.+.|++++|+|+|++ +++|+.||+|+|||+.++ +.+. .+.+|.+.|++++|+|+
T Consensus 6 ~gH~~~V~~l~~s~dg~~-latg~~dg~I~vwd~~~~~~~~~~-------------------~l~~h~~~V~~l~~s~~~ 65 (753)
T 3jro_A 6 NAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHPK 65 (753)
T ss_dssp --CCCCEEEECCCSSSCC-EEEEETTTEEEEEEEETTEEEEEE-------------------EECCCSSCEEEEEECCTT
T ss_pred ccCcceeEEEEECCCCCe-EEEEECCCcEEEEecCCCCCccce-------------------eccCCcCceEEEEecCCC
Confidence 359999999999999995 999999999999999843 3322 36899999999999998
Q ss_pred -CCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCC--CCceEEEEecCCCcEEEEeCCCC--ceeEEEe
Q 001295 424 -GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNG--AKQYIFE 498 (1106)
Q Consensus 424 -g~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~ 498 (1106)
+++|++|+.||+|++||+.+++. .....+.+|...|.+++|+|+ +. ++++|+.||.|++||+.++ .....+.
T Consensus 66 ~~~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~~~ 142 (753)
T 3jro_A 66 FGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIID 142 (753)
T ss_dssp SCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeEee
Confidence 99999999999999999998762 233467889999999999999 88 8999999999999999887 3456778
Q ss_pred ccCCCeEEEeccccC-----------CceEEEEEecCCeEEEEeCCCCCce----eEeeCCCCeeEEEEEecCCCeEEEe
Q 001295 499 GHEAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLGSR----VDYEAPGRWCTTMAYSADGTRTYQG 563 (1106)
Q Consensus 499 ~h~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~~~~~ 563 (1106)
+|...|.+++|++.. ++.++++|+.||.|++||+++.... ..+..|...|.+++|+|++.
T Consensus 143 ~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~----- 217 (753)
T 3jro_A 143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL----- 217 (753)
T ss_dssp CCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS-----
T ss_pred cCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCC-----
Confidence 899999999998742 4679999999999999999876432 24445555555555555510
Q ss_pred eeccceeEEEEcCCCCEEEEEECCCeEEEEECCCccee---EEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEcc
Q 001295 564 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL---TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 640 (1106)
Q Consensus 564 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 640 (1106)
.+.++++++.||.|++||+.+++.. .......+...|.+++|+|+|+++++++.||.|++|++.
T Consensus 218 -------------~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 218 -------------LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp -------------SSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred -------------CCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 0457999999999999999886421 112223345679999999999999999999999999998
Q ss_pred CC
Q 001295 641 DG 642 (1106)
Q Consensus 641 ~~ 642 (1106)
++
T Consensus 285 ~~ 286 (753)
T 3jro_A 285 LE 286 (753)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.2e-27 Score=275.21 Aligned_cols=247 Identities=9% Similarity=0.033 Sum_probs=201.4
Q ss_pred CCCCeeEEEEecCCCEE-EEEe-CCeEEEEEcC--CCceeeeec--CCCCCeeEEEEecCCCceEEEeeCCCcEEEEEee
Q 001295 809 PEEAVPCFALSKNDSYV-MSAS-GGKISLFNMM--TFKTMATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 882 (1106)
Q Consensus 809 ~~~~v~~l~~s~~~~~l-~~~s-dg~i~vwd~~--~~~~~~~~~--~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~ 882 (1106)
|...|.+++|+|++++| ++++ ||.|++||+. +++.+..+. .|...|++++|+| ++++|++|+.||.|++|++.
T Consensus 101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~g~v~~~~~~ 179 (450)
T 2vdu_B 101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-DDTTVIIADKFGDVYSIDIN 179 (450)
T ss_dssp CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-CCCEEEEEeCCCcEEEEecC
Confidence 66789999999999996 7887 8999999999 888888876 5678899999999 89999999999999999998
Q ss_pred cceEEE----EecCcccCeeEEEEecC---CCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCC
Q 001295 883 VDEVKS----KLKGHSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 955 (1106)
Q Consensus 883 ~~~~~~----~l~~h~~~V~~l~~s~d---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d 955 (1106)
+++... .+.+|...|++++|+|+ +++|++++.|++|++||+.+++.. .....+|. ..|.+++|+ +
T Consensus 180 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~----~~~~~~h~---~~v~~~~~s-d 251 (450)
T 2vdu_B 180 SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV----DKWLFGHK---HFVSSICCG-K 251 (450)
T ss_dssp SCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE----EEECCCCS---SCEEEEEEC-S
T ss_pred CcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee----eeeecCCC---CceEEEEEC-C
Confidence 876544 78899999999999999 999999999999999999876532 12234454 478999999 9
Q ss_pred CcEEEE-EeCCeEEEEecCCceEeeecccC-----------------------CCCCCeeEEEECCCCCEEEEEE-cCCe
Q 001295 956 QIHFLV-VHETQLAIFETTKLECVKQWVPR-----------------------ESSAPITHATFSCDSQLVYACF-LDAT 1010 (1106)
Q Consensus 956 g~~l~~-~~d~~v~i~d~~~~~~~~~~~~~-----------------------~h~~~v~~l~~s~d~~~l~t~s-~Dg~ 1010 (1106)
+++|++ +.|+.|++||+.+++++..+... .+...|.+++|+|++++|++++ .|+.
T Consensus 252 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~ 331 (450)
T 2vdu_B 252 DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKC 331 (450)
T ss_dssp TTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCe
Confidence 999999 58999999999999988776521 2246799999999999999999 8999
Q ss_pred EEEEEc--CCc---eeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeC-------CCcEEEEeecCCCCccC
Q 001295 1011 VCVFSA--ANL---KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS-------DGGVHVFEPLESEGKWG 1077 (1106)
Q Consensus 1011 i~vwd~--~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~-------Dg~v~vW~~~~~~~~~~ 1077 (1106)
|+||++ .++ +.+..+. +| ..+. .++|+| + .++++.+. +..|.+|.+....+.|.
T Consensus 332 i~iw~~~~~~~~~l~~~~~~~-------~~--~~v~--~~~~~~-~-~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~ 397 (450)
T 2vdu_B 332 IIILEMSEKQKGDLALKQIIT-------FP--YNVI--SLSAHN-D-EFQVTLDNKESSGVQKNFAKFIEYNLNENSFV 397 (450)
T ss_dssp EEEEEECSSSTTCEEEEEEEE-------CS--SCEE--EEEEET-T-EEEEEECCTTCCSSCCCSEEEEEEETTTTEEE
T ss_pred EEEEEeccCCCCceeeccEec-------cC--CceE--EEEecC-C-cEEEEEecccCCCCCCcceEEEEEEcCCCeEE
Confidence 999999 555 5555554 21 2244 899999 4 45555433 55689999877665553
No 120
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=4.6e-28 Score=274.73 Aligned_cols=348 Identities=13% Similarity=0.108 Sum_probs=212.1
Q ss_pred CCCcEEEEE---ecCCCeEEEEEeccCcEEEEecCCcce-----eEEeeeeeeccCcCCc-----cccccccCCCCcCeE
Q 001295 350 GSSPMSMDF---HPVQQTLLLVGTNVGDIGLWEVGSRER-----LVLRNFKVWDLGACSM-----PLQAALVKDPGVSVN 416 (1106)
Q Consensus 350 ~~~v~~~~~---sp~g~~llatg~~dg~i~iwd~~~~~~-----~~~~~~~~~d~~~~~~-----~~~~~~~~~h~~~V~ 416 (1106)
.....++.| +|++..++++| .++.|.+|+...... ........++...... +........|...+.
T Consensus 15 ~~~p~~~~w~~~~~~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (393)
T 4gq1_A 15 NVRPYTTTWCSQSPSCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGN 93 (393)
T ss_dssp TCCEEEEEECTTSGGGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC-------
T ss_pred CCCCeEEEEeCCCCCCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcc
Confidence 345566677 45666566665 578899998643211 1111111221111000 011112345566666
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEEccCCceee--eeeeeccccCCeeEEEEcC--------CCCceEEEEecCCCcEEEE
Q 001295 417 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR--QHLEIDAHVGGVNDIAFSH--------PNKQLCVITCGDDKTIKVW 486 (1106)
Q Consensus 417 ~l~~spdg~~las~~~d~~v~iwd~~~~~~~~--~~~~l~~h~~~V~~~~~s~--------d~~~~~l~s~~~d~~i~iw 486 (1106)
...+++++.+||+++.|++|+|||+.+++... ....+.+|.+.|++++|+| |++ +|+||+.|++|+||
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~W 171 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIW 171 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEE
Confidence 66777788999999999999999999887543 3345789999999999998 777 89999999999999
Q ss_pred eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeec
Q 001295 487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 566 (1106)
Q Consensus 487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 566 (1106)
|+.++.++..+.+|...|.+++|+|.. ..+|++++.||+|++||+++.........+.......
T Consensus 172 d~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~--------------- 235 (393)
T 4gq1_A 172 RLTDEGPILAGYPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW--------------- 235 (393)
T ss_dssp EEETTEEEEEEEECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCC---------------
T ss_pred ECCCCceeeeecCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccce---------------
Confidence 999999888888999999999997653 2589999999999999998866544332221111100
Q ss_pred cceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEc-cCCCEEEEEeCCCcEEEEEccCCchh
Q 001295 567 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDGIRL 645 (1106)
Q Consensus 567 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~ 645 (1106)
..+...... .......++...+.++.|+ +|++.+++++.|+++++||+..+ +.
T Consensus 236 --------------~~s~~~~~~-----------~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~-~~ 289 (393)
T 4gq1_A 236 --------------LLTLNTLPL-----------VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN-ND 289 (393)
T ss_dssp --------------SEEEESGGG-----------C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------
T ss_pred --------------EEecccccc-----------eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC-CC
Confidence 011111000 0011111234568899987 79999999999999999999776 22
Q ss_pred hhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCC
Q 001295 646 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 725 (1106)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 725 (1106)
...+..
T Consensus 290 ~~~l~~-------------------------------------------------------------------------- 295 (393)
T 4gq1_A 290 YNEISD-------------------------------------------------------------------------- 295 (393)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEee--------------------------------------------------------------------------
Confidence 222211
Q ss_pred CCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccC
Q 001295 726 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 805 (1106)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 805 (1106)
+...+..+.+.++.+.+..
T Consensus 296 ----------------~~~~~~~~~~~~~~~~~~~--------------------------------------------- 314 (393)
T 4gq1_A 296 ----------------STMKLGPKNLLPNVQGISL--------------------------------------------- 314 (393)
T ss_dssp ------------------------CCSCSEEEECS---------------------------------------------
T ss_pred ----------------ecCccccEEEccccccccc---------------------------------------------
Confidence 2222333333443321110
Q ss_pred CCCCCCCeeEEEEec-CCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEee
Q 001295 806 DSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 882 (1106)
Q Consensus 806 ~~~~~~~v~~l~~s~-~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~ 882 (1106)
+...+..+.+.+ ++.++++|+ ||+|++||+.+++....+..|...|.+++|+| ||++||+++.+| +.+|.+.
T Consensus 315 ---~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafsp-dG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 315 ---FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQ-DGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp ---SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECT-TSSEEEEEESSE-EEEEEEG
T ss_pred ---cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCC-eEEEEEe
Confidence 111122222223 344566777 89999999999999888888999999999999 999999998766 6666553
No 121
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=2.5e-27 Score=264.52 Aligned_cols=297 Identities=14% Similarity=0.186 Sum_probs=209.1
Q ss_pred cCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEe
Q 001295 408 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 487 (1106)
Q Consensus 408 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd 487 (1106)
+..|...|.+++|||||++||+|+.++ ++|||+.+++... ..+...+..++|.+++.. ++++++.|++|++||
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM-----SQEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD 87 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE-----EEECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee-----eeecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence 578999999999999999999998776 7899998765443 122335888999998884 446788899999999
Q ss_pred CCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCC-CceeEeeCCCCeeEEEEEecCCCeEEEeeec
Q 001295 488 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 566 (1106)
Q Consensus 488 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 566 (1106)
+.+++++..+. |...|.+++++++ .++++ .|+.|++||+.+. +.+..+.. ....+++
T Consensus 88 ~~~~~~~~~~~-~~~~v~~v~~~~~----~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~------------- 145 (355)
T 3vu4_A 88 DVKKQDVSRIK-VDAPVKDLFLSRE----FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEF------------- 145 (355)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEECSS----EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEE-------------
T ss_pred CCCCcEEEEEE-CCCceEEEEEcCC----EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEE-------------
Confidence 99999999887 6779999997542 34443 4889999999886 44433332 2222223
Q ss_pred cceeEEEEcCCCCEEEE--EECCCeEEEEECCCcc----------------eeEEEccCCCCCCcCeEEEccCCCEEEEE
Q 001295 567 RSLGVVQFDTTKNRFLA--AGDDFSIKFWDMDSVQ----------------LLTSIDADGGLPASPRIRFNKDGCLLAVS 628 (1106)
Q Consensus 567 ~~i~~~~~~~~~~~l~~--~~~d~~i~iwd~~~~~----------------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 628 (1106)
++ .+++. |+.||.|++||+.+++ .+..+.+| ...|.+++|+|+|++|++|
T Consensus 146 --------s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h--~~~v~~~~~s~~g~~l~s~ 213 (355)
T 3vu4_A 146 --------SN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH--TNPIKMVRLNRKSDMVATC 213 (355)
T ss_dssp --------ET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCC--SSCEEEEEECTTSSEEEEE
T ss_pred --------Ec--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc--CCceEEEEECCCCCEEEEE
Confidence 33 34555 5789999999999865 25667666 5589999999999999999
Q ss_pred eCCCc-EEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCC
Q 001295 629 TNDNG-IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK 707 (1106)
Q Consensus 629 ~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (1106)
+.|++ |++||+.++ +.+..+.
T Consensus 214 s~d~~~v~iwd~~~~-~~~~~~~--------------------------------------------------------- 235 (355)
T 3vu4_A 214 SQDGTIIRVFKTEDG-VLVREFR--------------------------------------------------------- 235 (355)
T ss_dssp ETTCSEEEEEETTTC-CEEEEEE---------------------------------------------------------
T ss_pred eCCCCEEEEEECCCC-cEEEEEE---------------------------------------------------------
Confidence 99998 999999876 2222211
Q ss_pred ccccccCCCceeeEecCCCCCCccceecccCccc-cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCcccc-
Q 001295 708 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENL-RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATA- 785 (1106)
Q Consensus 708 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~- 785 (1106)
.+ |...|.+++|+|++++|++++.|+.|++|++.............
T Consensus 236 --------------------------------~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~ 283 (355)
T 3vu4_A 236 --------------------------------RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGW 283 (355)
T ss_dssp --------------------------------CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTT
T ss_pred --------------------------------cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccce
Confidence 01 66789999999999999999999999999997543221111000
Q ss_pred ---ccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCC
Q 001295 786 ---SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF 841 (1106)
Q Consensus 786 ---~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~ 841 (1106)
...-..|... ...+.. ........++|++++++|++++ ||.+++|++..+
T Consensus 284 ~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 284 INMKYFQSEWSLC-----NFKLSV-DKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp EECCCCCCSSCSE-----EEECCC-CTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred eecccccccccee-----EEEecc-CCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 0000011110 000110 1233457799999999999998 999999998653
No 122
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=2e-28 Score=277.76 Aligned_cols=267 Identities=10% Similarity=-0.025 Sum_probs=185.9
Q ss_pred cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc-----
Q 001295 348 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP----- 422 (1106)
Q Consensus 348 ~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp----- 422 (1106)
.|...+....+++++. +||+|+.|++|+|||+.+++......+. .+.+|.+.|.+++|+|
T Consensus 87 ~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~~~--------------~~~gH~~~v~~v~~~p~~~~~ 151 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHVLG--------------GKSGHHNFVNDIDIADVYSAD 151 (393)
T ss_dssp ----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEEEC--------------TTTSCSSCEEEEEEEEEECTT
T ss_pred ccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeeeec--------------ccCCCCCceEEEEEccccccc
Confidence 3555556666666776 6999999999999999988765432221 4789999999999998
Q ss_pred ---CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEE--
Q 001295 423 ---DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-- 497 (1106)
Q Consensus 423 ---dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-- 497 (1106)
||++||+|+.|++|+|||+.++..+. .+.+|...|.+++|+|++.. +|++|+.|++|++||+.+++.....
T Consensus 152 ~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~~~~ 227 (393)
T 4gq1_A 152 NRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEENSQ 227 (393)
T ss_dssp CSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC-------
T ss_pred cCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCcccccccc
Confidence 89999999999999999998876554 46678999999999999865 7999999999999999987654322
Q ss_pred -----------------------eccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEe
Q 001295 498 -----------------------EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 554 (1106)
Q Consensus 498 -----------------------~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 554 (1106)
.+|...+.++.|. .+++..+++++.|+++++||+........+..+...+..+.+.
T Consensus 228 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~-~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~ 306 (393)
T 4gq1_A 228 TELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWI-GSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLL 306 (393)
T ss_dssp ---CSCCCSEEEESGGGC------CCSSSCSEEEEE-TTTTCEEEEECTTSEEEEEEC-------------------CCS
T ss_pred cCCcccceEEecccccceeeeecccccccceeeeee-cCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEc
Confidence 3677788888875 3567899999999999999999887777777777777777777
Q ss_pred cCCCeEEEeeeccceeEEEEcCCCC-EEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCc
Q 001295 555 ADGTRTYQGFRKRSLGVVQFDTTKN-RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG 633 (1106)
Q Consensus 555 ~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 633 (1106)
++.+... .....+..+.+.+.+. ++++|+.||.|++||+.+++....+..+. ..|.+++|+|||++||+++.+|
T Consensus 307 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~--~~V~svafspdG~~LA~as~~G- 381 (393)
T 4gq1_A 307 PNVQGIS--LFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG--MPIVDFCWHQDGSHLAIATEGS- 381 (393)
T ss_dssp CSEEEEC--SSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECS--SCEEEEEECTTSSEEEEEESSE-
T ss_pred ccccccc--ccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCC--CcEEEEEEcCCCCEEEEEeCCC-
Confidence 7754221 1111233333333344 55667889999999999999888776664 4799999999999999999765
Q ss_pred EEEEEc
Q 001295 634 IKILAT 639 (1106)
Q Consensus 634 i~iwd~ 639 (1106)
+.+|.+
T Consensus 382 v~lvrL 387 (393)
T 4gq1_A 382 VLLTRL 387 (393)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 556654
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=3.5e-27 Score=272.77 Aligned_cols=296 Identities=14% Similarity=0.123 Sum_probs=226.9
Q ss_pred cCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeee--eeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC
Q 001295 413 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL--EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 490 (1106)
Q Consensus 413 ~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~--~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 490 (1106)
..+.+++|+|++.++++++.++.|++||+.+++...... .+.+|.+.|.+++|++++. ++++++.|+.|++||+.+
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~v~~~d~~~ 200 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE--LWVSQMQANAVHVFDLKT 200 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE--EEEEEGGGTEEEEEETTT
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE--EEEEECCCCEEEEEECCC
Confidence 356699999988888888889999999999988664221 3458999999999999998 899999999999999999
Q ss_pred CceeEEEeccCCCeEEEeccccCCceEE-EEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccce
Q 001295 491 GAKQYIFEGHEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 569 (1106)
Q Consensus 491 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i 569 (1106)
++.+..+..|...+.+++|+++. ..+ ++++.|+.|++||+++++....+.. ...+.+++|+|++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g------------ 265 (433)
T 3bws_A 201 LAYKATVDLTGKWSKILLYDPIR--DLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDG------------ 265 (433)
T ss_dssp CCEEEEEECSSSSEEEEEEETTT--TEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTS------------
T ss_pred ceEEEEEcCCCCCeeEEEEcCCC--CEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCC------------
Confidence 99999999999999999987654 455 5666899999999987655444433 2334555555554
Q ss_pred eEEEEcCCCCEEEEEE--------CCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEE-EEEeCCCcEEEEEcc
Q 001295 570 GVVQFDTTKNRFLAAG--------DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATS 640 (1106)
Q Consensus 570 ~~~~~~~~~~~l~~~~--------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iwd~~ 640 (1106)
+++++++ .|+.|++||+.+++.+..+.... .+.+++|+|+++.+ ++++.++.|++||+.
T Consensus 266 ---------~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~ 333 (433)
T 3bws_A 266 ---------KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG---NKRHIVSGNTENKIYVSDMCCSKIEVYDLK 333 (433)
T ss_dssp ---------SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE---CEEEEEECSSTTEEEEEETTTTEEEEEETT
T ss_pred ---------CEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC---CcceEEECCCCCEEEEEecCCCEEEEEECC
Confidence 4677766 58899999999998877764322 57889999999755 566889999999987
Q ss_pred CCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceee
Q 001295 641 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV 720 (1106)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v 720 (1106)
++ +....+
T Consensus 334 ~~-~~~~~~----------------------------------------------------------------------- 341 (433)
T 3bws_A 334 EK-KVQKSI----------------------------------------------------------------------- 341 (433)
T ss_dssp TT-EEEEEE-----------------------------------------------------------------------
T ss_pred CC-cEEEEe-----------------------------------------------------------------------
Confidence 65 111110
Q ss_pred EecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcc
Q 001295 721 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM 800 (1106)
Q Consensus 721 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 800 (1106)
.+...+.+++|+|+++.+++++.+..
T Consensus 342 --------------------~~~~~~~~~~~s~dg~~l~~~~~~~~---------------------------------- 367 (433)
T 3bws_A 342 --------------------PVFDKPNTIALSPDGKYLYVSCRGPN---------------------------------- 367 (433)
T ss_dssp --------------------ECSSSEEEEEECTTSSEEEEEECCCC----------------------------------
T ss_pred --------------------cCCCCCCeEEEcCCCCEEEEEecCCC----------------------------------
Confidence 02345778999999988877765410
Q ss_pred ccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeC-CCcEEE
Q 001295 801 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DSSIQI 878 (1106)
Q Consensus 801 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~-dg~v~i 878 (1106)
. .+..++++++ ||.|++||+.+++.+..+.. ...+.+++|+| ++++|++++. |+.|++
T Consensus 368 --------~----------~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~d~~i~v 427 (433)
T 3bws_A 368 --------H----------PTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSP-DNRYLVISDFLDHQIRV 427 (433)
T ss_dssp --------C----------TTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECT-TSCEEEEEETTTTEEEE
T ss_pred --------c----------cccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcC-CCCEEEEEECCCCeEEE
Confidence 0 0223445556 89999999999998888875 45799999999 8888887765 999999
Q ss_pred EEeec
Q 001295 879 YNVRV 883 (1106)
Q Consensus 879 wd~~~ 883 (1106)
|++..
T Consensus 428 ~~~~~ 432 (433)
T 3bws_A 428 YRRDG 432 (433)
T ss_dssp EEETT
T ss_pred EEecC
Confidence 99863
No 124
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=5.8e-27 Score=261.62 Aligned_cols=294 Identities=10% Similarity=0.121 Sum_probs=204.6
Q ss_pred eeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEE-EEEeCCCcEEEEEccCCchhhh
Q 001295 569 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATSDGIRLLR 647 (1106)
Q Consensus 569 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~ 647 (1106)
+.+++|+|++++|++|+.+ .+++||+.+++........ .+..+++.++++.+ ++++.|+.|++||..++ +.+.
T Consensus 22 V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~-~~~~ 95 (355)
T 3vu4_A 22 VTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQEMR----HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK-QDVS 95 (355)
T ss_dssp CCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEECS----CCCEEEECTTSSEEEEECSSTTEEEEEETTTT-EEEE
T ss_pred eEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeeecC----CeEEEEEcCCCCEEEEEECCccEEEEEECCCC-cEEE
Confidence 3334444444467777766 5789999888776655432 47789999988887 46777899999998876 2211
Q ss_pred hhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCC
Q 001295 648 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS 727 (1106)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~ 727 (1106)
.+
T Consensus 96 ~~------------------------------------------------------------------------------ 97 (355)
T 3vu4_A 96 RI------------------------------------------------------------------------------ 97 (355)
T ss_dssp EE------------------------------------------------------------------------------
T ss_pred EE------------------------------------------------------------------------------
Confidence 11
Q ss_pred CCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCC
Q 001295 728 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS 807 (1106)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 807 (1106)
.+...|.++.++++. +++ +.++.+++|++.... ..+.. +
T Consensus 98 -------------~~~~~v~~v~~~~~~--~~~-~~~~~i~i~d~~~~~---------------------~~~~~-~--- 136 (355)
T 3vu4_A 98 -------------KVDAPVKDLFLSREF--IVV-SYGDVISVFKFGNPW---------------------KRITD-D--- 136 (355)
T ss_dssp -------------ECSSCEEEEEECSSE--EEE-EETTEEEEEESSTTC---------------------CBSSC-C---
T ss_pred -------------ECCCceEEEEEcCCE--EEE-EEcCEEEEEECCCCc---------------------eeeEE-e---
Confidence 033568888998775 333 357889999876320 11110 0
Q ss_pred CCCCCeeEEEEecCCCEEEEE--e-CCeEEEEEcCCCc----------------eeeeecCCCCCeeEEEEecCCCceEE
Q 001295 808 NPEEAVPCFALSKNDSYVMSA--S-GGKISLFNMMTFK----------------TMATFMPPPPAATFLAFHPQDNNIIA 868 (1106)
Q Consensus 808 ~~~~~v~~l~~s~~~~~l~~~--s-dg~i~vwd~~~~~----------------~~~~~~~~~~~v~~l~~s~~d~~~la 868 (1106)
......+++++ .+++++ + +|.|++||+.++. ++..+.+|...|++++|+| ++++||
T Consensus 137 --~~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~ 211 (355)
T 3vu4_A 137 --IRFGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVA 211 (355)
T ss_dssp --EEEEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEEE
T ss_pred --ccCCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEE
Confidence 11344566777 667764 4 7999999999765 2678899999999999999 999999
Q ss_pred EeeCCCc-EEEEEeecceEEEEec-C-cccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCC
Q 001295 869 IGMDDSS-IQIYNVRVDEVKSKLK-G-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQ 945 (1106)
Q Consensus 869 ~g~~dg~-v~iwd~~~~~~~~~l~-~-h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 945 (1106)
+|+.||+ |+|||+.+++++..+. + |...|++++|+||+++|++++.|++|++||+..........+..
T Consensus 212 s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~--------- 282 (355)
T 3vu4_A 212 TCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKG--------- 282 (355)
T ss_dssp EEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTT---------
T ss_pred EEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccc---------
Confidence 9999998 9999999999999998 6 99999999999999999999999999999998754322111110
Q ss_pred CCceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCce
Q 001295 946 SDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1020 (1106)
Q Consensus 946 ~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~ 1020 (1106)
+ +.|. ++ .. .|.. +...+. ..+......++|++|+++|++++.||.+++|++..++
T Consensus 283 -~----~~~~--~~--~~-----~~~~----~~~~~~-~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 283 -W----INMK--YF--QS-----EWSL----CNFKLS-VDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp -T----EECC--CC--CC-----SSCS----EEEECC-CCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred -e----eecc--cc--cc-----ccce----eEEEec-cCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 0 0000 00 00 0110 001111 1223455779999999999999999999999986543
No 125
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.4e-27 Score=294.38 Aligned_cols=251 Identities=12% Similarity=0.070 Sum_probs=209.9
Q ss_pred CCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcC--CCceeeeecCCCCCeeEEEEecCC--CceEEEeeCCCcEEEEEee
Q 001295 808 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQD--NNIIAIGMDDSSIQIYNVR 882 (1106)
Q Consensus 808 ~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~--~~~~~~~~~~~~~~v~~l~~s~~d--~~~la~g~~dg~v~iwd~~ 882 (1106)
+|...|++++|+|++++|++|+ ||.|++||+. ++.....+.+|...|++++|++ + +++|++|+.||.|++||+.
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~vwd~~ 85 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIWKEE 85 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEEEEEE
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEEEECC
Confidence 3999999999999999999998 8999999998 5677888999999999999998 6 8999999999999999999
Q ss_pred cce--EEEEecCcccCeeEEEEecC--CCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcC----
Q 001295 883 VDE--VKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ---- 954 (1106)
Q Consensus 883 ~~~--~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---- 954 (1106)
+++ .+..+.+|...|++++|+|+ +.+|++++.||+|++||+.++....... ..+|. ..|.+++|+|
T Consensus 86 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~---~~~~~---~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII---IDAHA---IGVNSASWAPATIE 159 (753)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE---EECCS---SCEEEEEECCCC--
T ss_pred CCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE---eecCC---CceEEEEecCcccc
Confidence 987 77888999999999999999 9999999999999999998864433222 22333 4789999999
Q ss_pred ---------CCcEEEE-EeCCeEEEEecCCc----eEeeecccCCCCCCeeEEEECCC---CCEEEEEEcCCeEEEEEcC
Q 001295 955 ---------DQIHFLV-VHETQLAIFETTKL----ECVKQWVPRESSAPITHATFSCD---SQLVYACFLDATVCVFSAA 1017 (1106)
Q Consensus 955 ---------dg~~l~~-~~d~~v~i~d~~~~----~~~~~~~~~~h~~~v~~l~~s~d---~~~l~t~s~Dg~i~vwd~~ 1017 (1106)
++.++++ +.|+.|++||+.++ .+...+. +|...|++++|+|+ +++|++|+.||+|++||+.
T Consensus 160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec--CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 5888888 58999999999877 3444443 89999999999999 8999999999999999999
Q ss_pred CceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295 1018 NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus 1018 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
++......... ...+| ...+. +++|+| ++++|++|+.||.|++|++.++.
T Consensus 238 ~~~~~~~~~~~--~~~~~-~~~v~--~l~~sp-dg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 238 NEQGPWKKTLL--KEEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSSSCCBCCBS--SSSCC-SSCCC--CEEECT-TTCCEEEECSSSCEECCBCCSSS
T ss_pred CCCCcceeEEe--ccCCC-CCceE--EEEEcC-CCCEEEEEcCCCEEEEEecCCCC
Confidence 87532221111 11122 33355 799999 78999999999999999998654
No 126
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.1e-27 Score=266.67 Aligned_cols=198 Identities=11% Similarity=0.064 Sum_probs=158.2
Q ss_pred CCCCeeEEEEec--CCCEEEEEe-CCeEEEEEcCCCceeeeec-CCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecc
Q 001295 809 PEEAVPCFALSK--NDSYVMSAS-GGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 884 (1106)
Q Consensus 809 ~~~~v~~l~~s~--~~~~l~~~s-dg~i~vwd~~~~~~~~~~~-~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~ 884 (1106)
|...|.+++++| +++++++++ ||+|++||+.+++...... .+...+++++|+| ++.+||+|+.||.|++||+.++
T Consensus 124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~ 202 (343)
T 3lrv_A 124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSP 202 (343)
T ss_dssp CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCT
T ss_pred CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCC
Confidence 667899999999 999999999 9999999999998876664 3455799999999 9999999999999999999999
Q ss_pred eEE-EEecC-cccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCC--ceEEEcCCCcEEE
Q 001295 885 EVK-SKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD--TRVQFHQDQIHFL 960 (1106)
Q Consensus 885 ~~~-~~l~~-h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~s~dg~~l~ 960 (1106)
+.+ ..+.+ |.+.|++++|+|++.+|++++. ++|++||+.+.+... .+.....+. ..+ .+++|+|+|++|+
T Consensus 203 ~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~g~~l~ 276 (343)
T 3lrv_A 203 DQASSRFPVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTL--AYPTYTIPE---FKTGTVTYDIDDSGKNMI 276 (343)
T ss_dssp TSCCEECCCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCB--SSCCCBC--------CCEEEEECTTSSEEE
T ss_pred CCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcce--eeccccccc---ccccceEEEECCCCCEEE
Confidence 887 78888 9999999999999999999994 599999999865422 111111111 122 4699999999999
Q ss_pred EE-e-CCeEEEEecCCceEeeecccCCCCCCeeEEEECC---CCCEEEEEEcCCeEEEEEcCCc
Q 001295 961 VV-H-ETQLAIFETTKLECVKQWVPRESSAPITHATFSC---DSQLVYACFLDATVCVFSAANL 1019 (1106)
Q Consensus 961 ~~-~-d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~---d~~~l~t~s~Dg~i~vwd~~~~ 1019 (1106)
++ . |+.+++|++.+....... .++..++|++ +.+.|++++.||.+.++-....
T Consensus 277 ~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~ 334 (343)
T 3lrv_A 277 AYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDVVCGDGGIAAILKTND 334 (343)
T ss_dssp EEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEEEEETTEEEEEEECSS
T ss_pred EecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEEEecCCceEEEEecCC
Confidence 94 4 999999999765432221 4678889998 8999999999999998865443
No 127
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=1.5e-26 Score=266.19 Aligned_cols=212 Identities=19% Similarity=0.277 Sum_probs=174.6
Q ss_pred ccCCCCcCeEEEEEccC-CCEEEEEeCCCeEEEEEccCC-------ceeeeeeeeccccCCeeEEEEcCCCCceEEEEec
Q 001295 407 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGG-------DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 478 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~spd-g~~las~~~d~~v~iwd~~~~-------~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~ 478 (1106)
....|.+.|++++|+|+ +.+||+++.||.|++||+.+. ........+.+|...|.+++|+|++.. +|++|+
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~ 201 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSAS 201 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEEC
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEEe
Confidence 45689999999999997 789999999999999999862 112334468899999999999999886 699999
Q ss_pred CCCcEEEEeCCCCce-------eEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCC---CceeEeeCCCCee
Q 001295 479 DDKTIKVWDATNGAK-------QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWC 548 (1106)
Q Consensus 479 ~d~~i~iwd~~~~~~-------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v 548 (1106)
.||.|++||+.++.. ...+.+|...|.+++|++.. +.+|++++.||.|++||+++. .....+..+...|
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH-ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCC-CCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 999999999987432 46778999999999998743 378999999999999999976 3445556666666
Q ss_pred EEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCC-cceeEEEccCCCCCCcCeEEEccCCC-EEE
Q 001295 549 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGC-LLA 626 (1106)
Q Consensus 549 ~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~ 626 (1106)
.+++|+|++. ..+++|+.||.|++||+++ +..+..+..| ...|.+++|+|+++ +|+
T Consensus 281 ~~i~~~p~~~--------------------~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h--~~~v~~i~~sp~~~~~l~ 338 (430)
T 2xyi_A 281 NCLSFNPYSE--------------------FILATGSADKTVALWDLRNLKLKLHSFESH--KDEIFQVQWSPHNETILA 338 (430)
T ss_dssp EEEEECSSCT--------------------TEEEEEETTSEEEEEETTCTTSCSEEEECC--SSCEEEEEECSSCTTEEE
T ss_pred EEEEeCCCCC--------------------CEEEEEeCCCeEEEEeCCCCCCCeEEeecC--CCCEEEEEECCCCCCEEE
Confidence 6666666554 2588999999999999988 5677888766 44799999999884 799
Q ss_pred EEeCCCcEEEEEccCC
Q 001295 627 VSTNDNGIKILATSDG 642 (1106)
Q Consensus 627 ~~~~dg~i~iwd~~~~ 642 (1106)
+++.||.|++||+...
T Consensus 339 s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 339 SSGTDRRLHVWDLSKI 354 (430)
T ss_dssp EEETTSCCEEEEGGGT
T ss_pred EEeCCCcEEEEeCCCC
Confidence 9999999999998763
No 128
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6e-27 Score=260.82 Aligned_cols=280 Identities=8% Similarity=0.049 Sum_probs=214.4
Q ss_pred EEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeC
Q 001295 464 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA 543 (1106)
Q Consensus 464 ~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 543 (1106)
.+.+++. ++++|+.||+|++||+.+++.+..+. ...|.++.+++. +++++.|++|++|+..
T Consensus 43 ~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~---------- 103 (343)
T 3lrv_A 43 SMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPG---------- 103 (343)
T ss_dssp SSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETT----------
T ss_pred hhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEcc----------
Confidence 3445666 89999999999999999999988887 466777777654 9999999999999765
Q ss_pred CCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEcc--C
Q 001295 544 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--D 621 (1106)
Q Consensus 544 ~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~--~ 621 (1106)
+.+.+|++.+++.+..+.. .+...|.+++|+| +
T Consensus 104 --------------------------------------------~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~ 138 (343)
T 3lrv_A 104 --------------------------------------------NQITILDSKTNKVLREIEV-DSANEIIYMYGHNEVN 138 (343)
T ss_dssp --------------------------------------------TEEEEEETTTCCEEEEEEC-CCSSCEEEEECCC---
T ss_pred --------------------------------------------CceEEeecCCcceeEEeec-CCCCCEEEEEcCCCCC
Confidence 2567889888887766652 2234799999999 9
Q ss_pred CCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCcc
Q 001295 622 GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVR 701 (1106)
Q Consensus 622 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1106)
++++++++.||.|++||+.++. ......
T Consensus 139 ~~~l~s~s~dg~i~~wd~~~~~-~~~~~~--------------------------------------------------- 166 (343)
T 3lrv_A 139 TEYFIWADNRGTIGFQSYEDDS-QYIVHS--------------------------------------------------- 166 (343)
T ss_dssp CCEEEEEETTCCEEEEESSSSC-EEEEEC---------------------------------------------------
T ss_pred CCEEEEEeCCCcEEEEECCCCc-EEEEEe---------------------------------------------------
Confidence 9999999999999999998762 111100
Q ss_pred ccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCC
Q 001295 702 SLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSG 781 (1106)
Q Consensus 702 ~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 781 (1106)
..+...|.+++|+|++.++++++.||.|++||+..
T Consensus 167 --------------------------------------~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~------- 201 (343)
T 3lrv_A 167 --------------------------------------AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS------- 201 (343)
T ss_dssp --------------------------------------CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC-------
T ss_pred --------------------------------------cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-------
Confidence 01345688999999999999999999999998763
Q ss_pred ccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecC---CCCCee--E
Q 001295 782 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMP---PPPAAT--F 856 (1106)
Q Consensus 782 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~---~~~~v~--~ 856 (1106)
+......+.. .|...|++++|+|++.+|++++++.|++||+++++.+..+.. |...+. +
T Consensus 202 ---------------~~~~~~~~~~-~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (343)
T 3lrv_A 202 ---------------PDQASSRFPV-DEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVT 265 (343)
T ss_dssp ---------------TTSCCEECCC-CTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEE
T ss_pred ---------------CCCCccEEec-cCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceE
Confidence 2222011111 288999999999999999999988999999998877666543 334444 6
Q ss_pred EEEecCCCceEEEeeC-CCcEEEEEeecceEEEEecCcccCeeEEEEec---CCCEEEEEcCCCcEEEEeCCC
Q 001295 857 LAFHPQDNNIIAIGMD-DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH---ALNVLVSSGADSQLCVWSSDG 925 (1106)
Q Consensus 857 l~~s~~d~~~la~g~~-dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~---d~~~l~s~s~Dg~i~vwd~~~ 925 (1106)
++|+| ++++|++++. |+.|+||++.+....... .++..++|++ +...|++++.|+.+.++-...
T Consensus 266 ~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 266 YDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp EEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred EEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 99999 8999999988 999999999765432222 5678888988 889999999999999885443
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=1.5e-25 Score=262.87 Aligned_cols=334 Identities=13% Similarity=0.140 Sum_probs=242.4
Q ss_pred EEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccC-CCCcCeEEEEEccCCCEEEEEeCCCe
Q 001295 357 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK-DPGVSVNRVIWSPDGSLFGVAYSRHI 435 (1106)
Q Consensus 357 ~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~h~~~V~~l~~spdg~~las~~~d~~ 435 (1106)
+|+|++. ++++++.|++|.+||..+++.+.. +. +|. +.+++|||||++|++++.|++
T Consensus 144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~-------------------i~~g~~--~~~v~~spdg~~l~v~~~d~~ 201 (543)
T 1nir_A 144 DLDLPNL-FSVTLRDAGQIALVDGDSKKIVKV-------------------IDTGYA--VHISRMSASGRYLLVIGRDAR 201 (543)
T ss_dssp CCCGGGE-EEEEEGGGTEEEEEETTTCCEEEE-------------------EECSTT--EEEEEECTTSCEEEEEETTSE
T ss_pred ccCCCCE-EEEEEcCCCeEEEEECCCceEEEE-------------------EecCcc--cceEEECCCCCEEEEECCCCe
Confidence 3889887 689999999999999999988764 23 443 889999999999999999999
Q ss_pred EEEEEc--cCCceeeeeeeeccccCCeeEEEEcC----CCCceEEEEec-CCCcEEEEeCCCCceeEEEecc--------
Q 001295 436 VQIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSH----PNKQLCVITCG-DDKTIKVWDATNGAKQYIFEGH-------- 500 (1106)
Q Consensus 436 v~iwd~--~~~~~~~~~~~l~~h~~~V~~~~~s~----d~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~h-------- 500 (1106)
|.+||+ .+++.+. ++. +...+..++|+| ||+ ++++++ .+++|.|||..+++++.++..+
T Consensus 202 V~v~D~~~~t~~~~~---~i~-~g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~ 275 (543)
T 1nir_A 202 IDMIDLWAKEPTKVA---EIK-IGIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT 275 (543)
T ss_dssp EEEEETTSSSCEEEE---EEE-CCSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred EEEEECcCCCCcEEE---EEe-cCCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEeccccccceeecccCcccCccc
Confidence 999999 7777655 344 345689999999 999 566666 5899999999999999988753
Q ss_pred --CC-CeEEEeccccCCceEEEEEecCCeEEEEeCCCCCcee--EeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEc
Q 001295 501 --EA-PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV--DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 575 (1106)
Q Consensus 501 --~~-~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~ 575 (1106)
.. .+.++.++++.. .++++...++.|.+||+.+.+... .+. +.. ....+.|+
T Consensus 276 ~~~~~~v~~i~~s~~~~-~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~---------------------~~~~~~~s 332 (543)
T 1nir_A 276 YHPEPRVAAIIASHEHP-EFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAP---------------------FLHDGGWD 332 (543)
T ss_dssp EESCCCEEEEEECSSSS-EEEEEETTTTEEEEEECTTSSSCEEEEEE-CCS---------------------SCCCEEEC
T ss_pred cccCCceEEEEECCCCC-EEEEEECCCCeEEEEEecCCCcceeEEec-cCc---------------------CccCceEC
Confidence 22 688888876543 678888899999999998755432 111 222 33345566
Q ss_pred CCCCEEEEEE-CCCeEEEEECCCcceeEEEccCCCCCCcCeEE-EccC-CCEEEEEe-CCCcEEEEEccCCchhhhhhcc
Q 001295 576 TTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIR-FNKD-GCLLAVST-NDNGIKILATSDGIRLLRTFEN 651 (1106)
Q Consensus 576 ~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~-~s~~-~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~ 651 (1106)
|+++++++++ .+++|.+||..+++++..+........-..+. ++|+ +.+++++. .|++|.+||+.+..
T Consensus 333 pdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~-------- 404 (543)
T 1nir_A 333 SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKN-------- 404 (543)
T ss_dssp TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT--------
T ss_pred CCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCC--------
Confidence 6666776654 68999999999999998886422111112233 4676 66667765 57999999986631
Q ss_pred cccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCcc
Q 001295 652 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 731 (1106)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~ 731 (1106)
|...
T Consensus 405 ~~~~---------------------------------------------------------------------------- 408 (543)
T 1nir_A 405 HPQY---------------------------------------------------------------------------- 408 (543)
T ss_dssp CTTT----------------------------------------------------------------------------
T ss_pred Cchh----------------------------------------------------------------------------
Confidence 0000
Q ss_pred ceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCC
Q 001295 732 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE 811 (1106)
Q Consensus 732 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 811 (1106)
.. + .++. +.+ |..
T Consensus 409 -----------~~-----------~---------~v~~----------------------------------l~~--~g~ 421 (543)
T 1nir_A 409 -----------AW-----------K---------KVAE----------------------------------LQG--QGG 421 (543)
T ss_dssp -----------BT-----------S---------EEEE----------------------------------EEC--SCS
T ss_pred -----------cC-----------e---------EEEE----------------------------------EEc--CCC
Confidence 00 0 0000 000 344
Q ss_pred CeeEEEEecCCCEEEEEe--------CCeEEEEEcCCCcee-eee--------cCCCCCeeEEEEecCCCceEEEee---
Q 001295 812 AVPCFALSKNDSYVMSAS--------GGKISLFNMMTFKTM-ATF--------MPPPPAATFLAFHPQDNNIIAIGM--- 871 (1106)
Q Consensus 812 ~v~~l~~s~~~~~l~~~s--------dg~i~vwd~~~~~~~-~~~--------~~~~~~v~~l~~s~~d~~~la~g~--- 871 (1106)
.+..++++|++++|++++ +++|.|||+.+++.. ..+ ..+...+..++|+| +|+.|+++.
T Consensus 422 ~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~s~~~~ 500 (543)
T 1nir_A 422 GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNG 500 (543)
T ss_dssp CCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS-SSSEEEEEEECC
T ss_pred CceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC-CCCEEEEEeecC
Confidence 456677888888888875 468999999988877 333 34567899999999 787777652
Q ss_pred --CCCcEEEEEeecceEEEEecCc
Q 001295 872 --DDSSIQIYNVRVDEVKSKLKGH 893 (1106)
Q Consensus 872 --~dg~v~iwd~~~~~~~~~l~~h 893 (1106)
.|+.|.|||..+++++.+++.+
T Consensus 501 ~~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 501 KNDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp TTSCCEEEEEETTTTEEEEEECCT
T ss_pred CCCCCeEEEEECCCceEEEeecCC
Confidence 4799999999999999998864
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=1.7e-25 Score=262.52 Aligned_cols=332 Identities=12% Similarity=0.100 Sum_probs=244.7
Q ss_pred EcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeC--CCCCceeEee
Q 001295 465 FSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY--DNLGSRVDYE 542 (1106)
Q Consensus 465 ~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~ 542 (1106)
|+|++. ++++++.|++|.+||..+++++.++..+.. +..++|+ +++++|++++.|+.|.+||+ .+.+....+.
T Consensus 145 ~~p~~~--~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~s--pdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 145 LDLPNL--FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMS--ASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp CCGGGE--EEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEEC--TTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred cCCCCE--EEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEEC--CCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 788887 899999999999999999999999984333 8888875 46689999999999999999 5554444444
Q ss_pred CCCCeeEEEEEec----CCCeEEEeeeccceeEEEEcCCCCEEEEEE-CCCeEEEEECCCcceeEEEccCC---------
Q 001295 543 APGRWCTTMAYSA----DGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADG--------- 608 (1106)
Q Consensus 543 ~~~~~v~~~~~s~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~--------- 608 (1106)
....+..++|+| || +++++++ .+++|.+||..+++++..+...+
T Consensus 220 -~g~~p~~va~sp~~~~dg---------------------~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~ 277 (543)
T 1nir_A 220 -IGIEARSVESSKFKGYED---------------------RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH 277 (543)
T ss_dssp -CCSEEEEEEECCSTTCTT---------------------TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE
T ss_pred -cCCCcceEEeCCCcCCCC---------------------CEEEEEEccCCeEEEEeccccccceeecccCcccCccccc
Confidence 233445555555 44 4777776 58999999999999998886532
Q ss_pred CCCCcCeEEEccCCCE-EEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccccccc
Q 001295 609 GLPASPRIRFNKDGCL-LAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 687 (1106)
Q Consensus 609 ~~~~v~~v~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1106)
....+..+.++|++.. +++...++.|.+||..+.. .+.
T Consensus 278 ~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~-~l~---------------------------------------- 316 (543)
T 1nir_A 278 PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID-NLT---------------------------------------- 316 (543)
T ss_dssp SCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSS-SCE----------------------------------------
T ss_pred cCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCC-cce----------------------------------------
Confidence 1124677888886554 4455567788888765441 000
Q ss_pred ccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceE
Q 001295 688 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 767 (1106)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 767 (1106)
+..+
T Consensus 317 ----------------------------------------------------------~~~i------------------ 320 (543)
T 1nir_A 317 ----------------------------------------------------------VTSI------------------ 320 (543)
T ss_dssp ----------------------------------------------------------EEEE------------------
T ss_pred ----------------------------------------------------------eEEe------------------
Confidence 0000
Q ss_pred EEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCCceee
Q 001295 768 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMA 845 (1106)
Q Consensus 768 ~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~ 845 (1106)
.+...+..++|+|+|+++++++ +++|.+||+.+++++.
T Consensus 321 ----------------------------------------~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~ 360 (543)
T 1nir_A 321 ----------------------------------------GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA 360 (543)
T ss_dssp ----------------------------------------ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred ----------------------------------------ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEE
Confidence 0223345688999999877665 6899999999999888
Q ss_pred eecC----CCCCeeEEEEecCCCceEEEee-CCCcEEEEEeec-------ceEEEEecCcccCeeEEEEecCCCEEEEEc
Q 001295 846 TFMP----PPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRV-------DEVKSKLKGHSKRITGLAFSHALNVLVSSG 913 (1106)
Q Consensus 846 ~~~~----~~~~v~~l~~s~~d~~~la~g~-~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s 913 (1106)
.+.. |.+....+ ++|+++.+++++. .|++|.+||+.+ +++++++.+|.+.+..++|+||+++|++++
T Consensus 361 ~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~ 439 (543)
T 1nir_A 361 LVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT 439 (543)
T ss_dssp EEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred eeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence 7764 54444343 5774577888875 689999999998 899999999999999999999999999987
Q ss_pred -------CCCcEEEEeCCCcccccceeecc--cCCCCCCCCCCceEEEcCCCcEEEEE------eCCeEEEEecCCceEe
Q 001295 914 -------ADSQLCVWSSDGWEKQKNRFLQI--PTGRTPTAQSDTRVQFHQDQIHFLVV------HETQLAIFETTKLECV 978 (1106)
Q Consensus 914 -------~Dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~s~dg~~l~~~------~d~~v~i~d~~~~~~~ 978 (1106)
.+++|.|||+.+++... ..+.+ ..+.......+..+.|+|||+.++++ .++.|.|||.++++++
T Consensus 440 ~~~~~~~~~~~v~v~d~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 440 TFNPDARISQSVAVFDLKNLDAKY-QVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK 518 (543)
T ss_dssp TTCSSHHHHTCEEEEETTCTTSCC-EEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred CCCCCcccCceEEEEECCCCCCCe-EEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence 27799999999977541 12211 11111112467899999999999974 2689999999999999
Q ss_pred eecc
Q 001295 979 KQWV 982 (1106)
Q Consensus 979 ~~~~ 982 (1106)
..+.
T Consensus 519 ~~i~ 522 (543)
T 1nir_A 519 AVVK 522 (543)
T ss_dssp EEEC
T ss_pred Eeec
Confidence 8876
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=6.9e-24 Score=241.59 Aligned_cols=302 Identities=11% Similarity=0.086 Sum_probs=221.4
Q ss_pred cCCeeEEEEcCCCCceEEEEec----CCC----cEEEEeC--CCCcee--EEEeccCCCeEEEecccc------------
Q 001295 457 VGGVNDIAFSHPNKQLCVITCG----DDK----TIKVWDA--TNGAKQ--YIFEGHEAPVYSVCPHHK------------ 512 (1106)
Q Consensus 457 ~~~V~~~~~s~d~~~~~l~s~~----~d~----~i~iwd~--~~~~~~--~~~~~h~~~v~~~~~~~~------------ 512 (1106)
...+...+|.+.|.. ++++|+ .|| +|++||+ .+++++ ..+.+|...+..+++.+.
T Consensus 62 ~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 357888899999886 677776 467 8999999 899887 458899888887776542
Q ss_pred CCceEEEEEecC------CeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEEC
Q 001295 513 ENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 586 (1106)
Q Consensus 513 ~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 586 (1106)
..+..++.++.+ +.|++||++. .....+..+...+.+++|+|||+ +|++++.
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~---------------------~la~~s~ 198 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGS---------------------KLAYVTF 198 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSS---------------------EEEEEEC
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCC---------------------EEEEEEe
Confidence 012456555554 7999999974 44445555555555555555554 7888887
Q ss_pred CC---eEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEE-EEeCCCc--EEEEEccCCchhhhhhcccccccccCC
Q 001295 587 DF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA-VSTNDNG--IKILATSDGIRLLRTFENLAYDASRTS 660 (1106)
Q Consensus 587 d~---~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~ 660 (1106)
++ .|++||+.+++... +..+ ...+.+++|+|||++|+ +++.++. |++||+.++. . ..+
T Consensus 199 ~~~~~~i~~~d~~tg~~~~-l~~~--~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-~-~~l----------- 262 (415)
T 2hqs_A 199 ESGRSALVIQTLANGAVRQ-VASF--PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-I-RQV----------- 262 (415)
T ss_dssp TTSSCEEEEEETTTCCEEE-EECC--SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-E-EEC-----------
T ss_pred cCCCcEEEEEECCCCcEEE-eecC--CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC-E-EeC-----------
Confidence 75 99999999988764 3333 33688999999999888 5665555 8888887651 1 100
Q ss_pred CCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCcc
Q 001295 661 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 740 (1106)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 740 (1106)
.
T Consensus 263 -------------------------------------------------------------------------------~ 263 (415)
T 2hqs_A 263 -------------------------------------------------------------------------------T 263 (415)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------c
Confidence 1
Q ss_pred ccccceEEEEEcCCCceEEEeec-Cc--eEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEE
Q 001295 741 LRATKISRLIFTNSGNAILALAS-NA--IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 817 (1106)
Q Consensus 741 ~~~~~i~~~~~s~~~~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~ 817 (1106)
.+...+.+++|+|||+.|++++. ++ .|.+|++. ++.... +. .+...+.+++
T Consensus 264 ~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~----------------------~~~~~~--l~--~~~~~~~~~~ 317 (415)
T 2hqs_A 264 DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN----------------------GGAPQR--IT--WEGSQNQDAD 317 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT----------------------SSCCEE--CC--CSSSEEEEEE
T ss_pred CCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC----------------------CCCEEE--Ee--cCCCcccCeE
Confidence 14456889999999999988886 45 45555543 333222 11 1556788999
Q ss_pred EecCCCEEEEEe-C---CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCC---cEEEEEeecceEEEEe
Q 001295 818 LSKNDSYVMSAS-G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS---SIQIYNVRVDEVKSKL 890 (1106)
Q Consensus 818 ~s~~~~~l~~~s-d---g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg---~v~iwd~~~~~~~~~l 890 (1106)
|+|||++|++++ + ..|++||+.+++.. .+..+. .+.+++|+| ++++|++++.++ .|++||+. ++....+
T Consensus 318 ~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l 393 (415)
T 2hqs_A 318 VSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD-GRFKARL 393 (415)
T ss_dssp ECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETT-SCCEEEC
T ss_pred ECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC-CCcEEEe
Confidence 999999999887 3 47999999988764 455454 899999999 899888888777 79999986 5567889
Q ss_pred cCcccCeeEEEEecCC
Q 001295 891 KGHSKRITGLAFSHAL 906 (1106)
Q Consensus 891 ~~h~~~V~~l~~s~d~ 906 (1106)
.+|.+.|.+++|+|.-
T Consensus 394 ~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 394 PATDGQVKFPAWSPYL 409 (415)
T ss_dssp CCSSSEEEEEEECCCC
T ss_pred eCCCCCCcCCcccccc
Confidence 9999999999999864
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=7.2e-23 Score=254.12 Aligned_cols=258 Identities=14% Similarity=0.093 Sum_probs=176.2
Q ss_pred CCCcEEEEEecCCCeEEEEEec-cC-----cEEEEecCCcceeEEeeeeeec-----cCcCCccccccccCCCCcCeEEE
Q 001295 350 GSSPMSMDFHPVQQTLLLVGTN-VG-----DIGLWEVGSRERLVLRNFKVWD-----LGACSMPLQAALVKDPGVSVNRV 418 (1106)
Q Consensus 350 ~~~v~~~~~sp~g~~llatg~~-dg-----~i~iwd~~~~~~~~~~~~~~~d-----~~~~~~~~~~~~~~~h~~~V~~l 418 (1106)
...|.+++|||||++ |++++. |+ .|.+||+.+++........... +...........-......|.++
T Consensus 36 ~~~~~~~~~SpdG~~-la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSR-VTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSE-EEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCE-EEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 467999999999996 777776 88 8999999998765431110000 00000000000000001348899
Q ss_pred EEccCCCEEEEEeCCCeEEEEEccCC---ceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeE
Q 001295 419 IWSPDGSLFGVAYSRHIVQIYSYHGG---DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 495 (1106)
Q Consensus 419 ~~spdg~~las~~~d~~v~iwd~~~~---~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 495 (1106)
+|||||++|++++. +.|.+||+.++ +.. .+..|...+.+++|||||+ .|+.++ ++.|++||+.+++...
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~----~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR----QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCC----BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEE
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEE----EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEE
Confidence 99999999999986 99999999987 433 3667888999999999999 677766 4699999999988766
Q ss_pred EEeccCCC----------------eEEEeccccCCceEEEEEecCC---------------------------------e
Q 001295 496 IFEGHEAP----------------VYSVCPHHKENIQFIFSTALDG---------------------------------K 526 (1106)
Q Consensus 496 ~~~~h~~~----------------v~~~~~~~~~~~~~l~s~~~dg---------------------------------~ 526 (1106)
....+... +.+++|++ ||++|++++.|+ .
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp--Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAP--DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECT--TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECC--CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 55444432 36677754 557888887765 7
Q ss_pred EEEEeCCC-CCceeEee--CCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEE-----CCCeEEEEECCCc
Q 001295 527 IKAWLYDN-LGSRVDYE--APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-----DDFSIKFWDMDSV 598 (1106)
Q Consensus 527 i~iwd~~~-~~~~~~~~--~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----~d~~i~iwd~~~~ 598 (1106)
|.+||+.+ ++...... .+...+..++| |||+ +|++++ .+..|++||+.++
T Consensus 265 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~---------------------~l~~~~~~~~~~~~~i~~~d~~~g 322 (741)
T 2ecf_A 265 LGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQ---------------------HLSFQRQSRDQKKLDLVEVTLASN 322 (741)
T ss_dssp EEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETT---------------------EEEEEEEETTSSEEEEEEEETTTC
T ss_pred EEEEECCCCCceEEecCCCCcceEEEEEEe-CCCC---------------------EEEEEEecccCCeEEEEEEECCCC
Confidence 88888876 55433221 23344555555 5554 566544 3678999999999
Q ss_pred ceeEEEccCCC--CCCcCeEEEccCCCEEEEEeCCCcEEEEEcc
Q 001295 599 QLLTSIDADGG--LPASPRIRFNKDGCLLAVSTNDNGIKILATS 640 (1106)
Q Consensus 599 ~~~~~~~~~~~--~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 640 (1106)
+....+..+.. ...+..++|+|||+++++++.+|.++||.+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 323 QQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp CEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred ceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEc
Confidence 88777654431 1135689999999998888888888888654
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=2e-23 Score=237.68 Aligned_cols=242 Identities=9% Similarity=0.009 Sum_probs=178.1
Q ss_pred CCCcEEEEEecCCCeEEEEEe----ccC----cEEEEec--CCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEE
Q 001295 350 GSSPMSMDFHPVQQTLLLVGT----NVG----DIGLWEV--GSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 419 (1106)
Q Consensus 350 ~~~v~~~~~sp~g~~llatg~----~dg----~i~iwd~--~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 419 (1106)
...|...+|++.|..++++|+ .|| +|+|||+ .+++.+.... +.+|...+..++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~~ 124 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNS-----------------YKVNKQWLRYAG 124 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEE-----------------EEECGGGHHHHH
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeE-----------------EEcChhHHHHHH
Confidence 357888899999987788887 357 8999999 8888764322 456666777777
Q ss_pred Ecc--------------CCCEEEEEeCC------CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecC
Q 001295 420 WSP--------------DGSLFGVAYSR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 479 (1106)
Q Consensus 420 ~sp--------------dg~~las~~~d------~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~ 479 (1106)
+++ .+..++.++.+ +.|++||+.++. .+ .+.+|...|.+++|+|||+ .|++++.
T Consensus 125 ~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~ 198 (415)
T 2hqs_A 125 HTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTF 198 (415)
T ss_dssp HHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEEC
T ss_pred HHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEe
Confidence 665 26677777654 799999998644 33 4778999999999999999 7888887
Q ss_pred CC---cEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEE-EEecCCe--EEEEeCCCCCceeEeeCCCCeeEEEEE
Q 001295 480 DK---TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIF-STALDGK--IKAWLYDNLGSRVDYEAPGRWCTTMAY 553 (1106)
Q Consensus 480 d~---~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~ 553 (1106)
++ .|++||+.+++.. .+..|...+.+++|+|+ |+.|+ +++.++. |++||+.++.. ..+..+...+.+++|
T Consensus 199 ~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spd--g~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~ 274 (415)
T 2hqs_A 199 ESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPD--GSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTW 274 (415)
T ss_dssp TTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTT--SSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEE
T ss_pred cCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCC--CCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEE
Confidence 75 9999999998875 56778889999998765 46566 6766654 99999987543 444555555666666
Q ss_pred ecCCCeEEEeeeccceeEEEEcCCCCEEEEEEC-CC--eEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeC
Q 001295 554 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN 630 (1106)
Q Consensus 554 s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 630 (1106)
+|||+ +|++++. ++ .|++||+.+++.. .+..+ ...+.+++|+|||++|++++.
T Consensus 275 spdg~---------------------~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~--~~~~~~~~~spdG~~l~~~~~ 330 (415)
T 2hqs_A 275 FPDSQ---------------------NLAFTSDQAGRPQVYKVNINGGAPQ-RITWE--GSQNQDADVSSDGKFMVMVSS 330 (415)
T ss_dssp CTTSS---------------------EEEEEECTTSSCEEEEEETTSSCCE-ECCCS--SSEEEEEEECTTSSEEEEEEE
T ss_pred CCCCC---------------------EEEEEECCCCCcEEEEEECCCCCEE-EEecC--CCcccCeEECCCCCEEEEEEC
Confidence 66655 6777665 44 7888899887643 33333 235778999999999988876
Q ss_pred C---CcEEEEEccCC
Q 001295 631 D---NGIKILATSDG 642 (1106)
Q Consensus 631 d---g~i~iwd~~~~ 642 (1106)
+ ..|++||+.++
T Consensus 331 ~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 331 NGGQQHIAKQDLATG 345 (415)
T ss_dssp CSSCEEEEEEETTTC
T ss_pred cCCceEEEEEECCCC
Confidence 4 46777776544
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=5.4e-23 Score=255.29 Aligned_cols=327 Identities=13% Similarity=0.049 Sum_probs=225.5
Q ss_pred CcCeEEEEEccCCCEEEEEeC-CC-----eEEEEEccCCceeeeeeeecccc------------------------CCee
Q 001295 412 GVSVNRVIWSPDGSLFGVAYS-RH-----IVQIYSYHGGDEVRQHLEIDAHV------------------------GGVN 461 (1106)
Q Consensus 412 ~~~V~~l~~spdg~~las~~~-d~-----~v~iwd~~~~~~~~~~~~l~~h~------------------------~~V~ 461 (1106)
...|.+++|||||++|++++. |+ .|++||+.+++... .+..|. ..|.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRL---LVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV 112 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEE---EECGGGTC--------------------CCEESC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeE---ccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence 457999999999999999998 88 89999999987544 233332 2389
Q ss_pred EEEEcCCCCceEEEEecCCCcEEEEeCCCCc--eeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCcee
Q 001295 462 DIAFSHPNKQLCVITCGDDKTIKVWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 539 (1106)
Q Consensus 462 ~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 539 (1106)
+++|+|||+ +|++++. +.|++||+.++. ....+..|...+..++|+| ||++|+.++ ++.|++||+.++....
T Consensus 113 ~~~~SpDg~--~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP--DG~~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 113 DYQWSPDAQ--RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP--KGGFVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp CCEECTTSS--EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT--TSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred eeEECCCCC--EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC--CCCEEEEEe-CCcEEEEecCCCCEEE
Confidence 999999999 6777765 999999999883 4556777888999999865 557888877 5699999998754433
Q ss_pred EeeCCCCe----------------eEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCC---------------
Q 001295 540 DYEAPGRW----------------CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF--------------- 588 (1106)
Q Consensus 540 ~~~~~~~~----------------v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--------------- 588 (1106)
....+... +..++|+|||+ +|++++.|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~---------------------~l~~~~~d~~~~~~~~~~~~~p~~ 245 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDS---------------------AIAYARIDESPVPVQKRYEVYADR 245 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSS---------------------CEEEEEEECTTSCEEEEEEECSSC
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCC---------------------EEEEEEEcCCCCceEecCCCCCCc
Confidence 22222221 24455555555 454444333
Q ss_pred ------------------eEEEEECCC-cceeEEEccCCCCCCcCeEEEccCCCEEEEEeC-----CCcEEEEEccCCch
Q 001295 589 ------------------SIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN-----DNGIKILATSDGIR 644 (1106)
Q Consensus 589 ------------------~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-----dg~i~iwd~~~~~~ 644 (1106)
.|++||+.+ ++.........+...+..++| |||++|++++. +..|++||+.++.
T Consensus 246 ~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~- 323 (741)
T 2ecf_A 246 TDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ- 323 (741)
T ss_dssp EEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC-
T ss_pred ccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc-
Confidence 789999988 876554433223446889999 99999997764 3456666665441
Q ss_pred hhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecC
Q 001295 645 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 724 (1106)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 724 (1106)
....+.
T Consensus 324 ~~~~~~-------------------------------------------------------------------------- 329 (741)
T 2ecf_A 324 QRVLAH-------------------------------------------------------------------------- 329 (741)
T ss_dssp EEEEEE--------------------------------------------------------------------------
T ss_pred eEEEEE--------------------------------------------------------------------------
Confidence 100000
Q ss_pred CCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccccc
Q 001295 725 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 804 (1106)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 804 (1106)
...++
T Consensus 330 ------------------------------------~~~~~--------------------------------------- 334 (741)
T 2ecf_A 330 ------------------------------------ETSPT--------------------------------------- 334 (741)
T ss_dssp ------------------------------------EECSS---------------------------------------
T ss_pred ------------------------------------cCCCC---------------------------------------
Confidence 00000
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcC-CCceeeeecCCCCCeeEE-EEecCCCceE-EEeeCCC--cEEE
Q 001295 805 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM-TFKTMATFMPPPPAATFL-AFHPQDNNII-AIGMDDS--SIQI 878 (1106)
Q Consensus 805 ~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~-~~~~~~~~~~~~~~v~~l-~~s~~d~~~l-a~g~~dg--~v~i 878 (1106)
.-..+..++|+|||+++++++ +|.++||.+. ++. ...+..+...+..+ .|+| +++.| ++++.++ .++|
T Consensus 335 ----~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l 408 (741)
T 2ecf_A 335 ----WVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQI 408 (741)
T ss_dssp ----CCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEE
T ss_pred ----cCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEE
Confidence 001234567888888777776 6767777664 344 67777777888887 5999 67655 5566665 8999
Q ss_pred EEeec-ceEEEEecCcccCeeEEEEecCCCEEEEEcCC----CcEEEEeCCCc
Q 001295 879 YNVRV-DEVKSKLKGHSKRITGLAFSHALNVLVSSGAD----SQLCVWSSDGW 926 (1106)
Q Consensus 879 wd~~~-~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D----g~i~vwd~~~~ 926 (1106)
|++.. ++....+.. ...+.+++|||||++|+....+ ..+.+|+....
T Consensus 409 ~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 409 YAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp EEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred EEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 99975 665667765 6678899999999998876544 46888987653
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=2.5e-23 Score=257.58 Aligned_cols=235 Identities=9% Similarity=0.064 Sum_probs=166.1
Q ss_pred CCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCc---CeEEEEEccCCCEE
Q 001295 351 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV---SVNRVIWSPDGSLF 427 (1106)
Q Consensus 351 ~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~---~V~~l~~spdg~~l 427 (1106)
..+.+++|||||++ +++ +.||+|++||+.+++.... +.+|.. .|.+++|||||++|
T Consensus 17 ~~~~~~~~spdg~~-~~~-~~dg~i~~~d~~~g~~~~~-------------------~~~~~~~~~~v~~~~~SpDg~~l 75 (723)
T 1xfd_A 17 IHDPEAKWISDTEF-IYR-EQKGTVRLWNVETNTSTVL-------------------IEGKKIESLRAIRYEISPDREYA 75 (723)
T ss_dssp CCCCCCCBSSSSCB-CCC-CSSSCEEEBCGGGCCCEEE-------------------ECTTTTTTTTCSEEEECTTSSEE
T ss_pred ccccccEEcCCCcE-EEE-eCCCCEEEEECCCCcEEEE-------------------eccccccccccceEEECCCCCEE
Confidence 34678999999994 666 6799999999999876542 445544 49999999999999
Q ss_pred EEEeCC---------CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEe
Q 001295 428 GVAYSR---------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 498 (1106)
Q Consensus 428 as~~~d---------~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 498 (1106)
|+++.+ +.|.+||+.+++. ..+....+|...+..++|||||+ .|+.++. +.|++||+.+++......
T Consensus 76 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~ 151 (723)
T 1xfd_A 76 LFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVS 151 (723)
T ss_dssp EEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEEC
T ss_pred EEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEec
Confidence 999864 7888999999875 33333445666799999999999 5676665 799999999988877666
Q ss_pred ccCCCe------------------EEEeccccCCceEEEEEecC-CeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCe
Q 001295 499 GHEAPV------------------YSVCPHHKENIQFIFSTALD-GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 559 (1106)
Q Consensus 499 ~h~~~v------------------~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 559 (1106)
.+...+ .+++|+| ||+.|++++.| +.+.+|++...... ....+..+.|.++|.
T Consensus 152 ~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp--Dg~~la~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~G~- 223 (723)
T 1xfd_A 152 TGKEGVIYNGLSDWLYEEEILKTHIAHWWSP--DGTRLAYAAINDSRVPIMELPTYTGS-----IYPTVKPYHYPKAGS- 223 (723)
T ss_dssp CCBTTTEEEEECCHHHHHTTSSSSEEEEECT--TSSEEEEEEEECTTSCEEEECCCSSS-----SSCCCEEEECCBTTS-
T ss_pred CCCCCceECcccceeEEEEeccCcceEEECC--CCCEEEEEEECCCccceEEeeccCCc-----CCCcceeccCCCCCC-
Confidence 544433 6788765 45778777654 56777876532211 112244455555443
Q ss_pred EEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCC----CCCCcCeEEEccCCCEEEEEeCC----
Q 001295 560 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTND---- 631 (1106)
Q Consensus 560 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~v~~v~~s~~~~~l~~~~~d---- 631 (1106)
. ..+..|++||+.+++....+..+. +...+..++|+|||+++++....
T Consensus 224 --------------------~----~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 279 (723)
T 1xfd_A 224 --------------------E----NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNV 279 (723)
T ss_dssp --------------------C----CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCE
T ss_pred --------------------C----CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCe
Confidence 1 234589999999988656665331 12357789999999988776532
Q ss_pred CcEEEEEccCC
Q 001295 632 NGIKILATSDG 642 (1106)
Q Consensus 632 g~i~iwd~~~~ 642 (1106)
..|++||+.++
T Consensus 280 ~~i~~~d~~~g 290 (723)
T 1xfd_A 280 SILTLCDATTG 290 (723)
T ss_dssp EEEEEEETTTC
T ss_pred EEEEEEeCCCC
Confidence 45677776554
No 136
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=1.3e-21 Score=241.22 Aligned_cols=249 Identities=8% Similarity=0.019 Sum_probs=156.5
Q ss_pred CcEEEEEecCCCeEEEEEeccCcEEEEecCCcce--eEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEE
Q 001295 352 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRER--LVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 429 (1106)
Q Consensus 352 ~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 429 (1106)
.+..+.|+ |.. +++++.|+ | +||+.+++. ....... .+.. ...........+...|.+++|||| ++++.
T Consensus 27 ~~~~~~w~--g~~-~~~~~~~~-i-~~d~~tg~~~~~~l~~~~--~~~~-~l~~~~~~~~~~~~~v~~~~~spd-~~~~~ 97 (706)
T 2z3z_A 27 YVVGLQWM--GDN-YVFIEGDD-L-VFNKANGKSAQTTRFSAA--DLNA-LMPEGCKFQTTDAFPSFRTLDAGR-GLVVL 97 (706)
T ss_dssp -CTTCEEE--TTE-EEEEETTE-E-EEEC-------CEEEEHH--HHHT-TC-----------CCCEEEEETTT-TEEEE
T ss_pred cCCCCcCc--CCe-EEEEeCCc-E-EEECCCCcEeeEEeechh--Hhhh-hccchhccccccccCceeEEECCC-CeEEE
Confidence 35567888 554 55566677 8 999999876 2211000 0000 000000000112257999999999 66666
Q ss_pred EeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC-----CceeEEEeccCCC-
Q 001295 430 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-----GAKQYIFEGHEAP- 503 (1106)
Q Consensus 430 ~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~h~~~- 503 (1106)
+. ++.|++||+.+++... +..+...+.+++|+|||+ .|+++ .|+.|++||+.+ ++.......+...
T Consensus 98 ~~-~~~i~~~d~~~~~~~~----l~~~~~~~~~~~~SpdG~--~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~ 169 (706)
T 2z3z_A 98 FT-QGGLVGFDMLARKVTY----LFDTNEETASLDFSPVGD--RVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETL 169 (706)
T ss_dssp EE-TTEEEEEETTTTEEEE----EECCTTCCTTCEECTTSS--EEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTE
T ss_pred EE-CCEEEEEECCCCceEE----ccCCcccccCCcCCCCCC--EEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCe
Confidence 54 5999999999886543 455777899999999999 56664 679999999998 8776554444443
Q ss_pred -------------eEEEeccccCCceEEEEEe---------------------------------cCCeEEEEeCCCCCc
Q 001295 504 -------------VYSVCPHHKENIQFIFSTA---------------------------------LDGKIKAWLYDNLGS 537 (1106)
Q Consensus 504 -------------v~~~~~~~~~~~~~l~s~~---------------------------------~dg~i~iwd~~~~~~ 537 (1106)
+.+++|++ ||++|++++ .+..|++||+.++..
T Consensus 170 ~~g~~~~~ee~~~~~~~~~Sp--Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~ 247 (706)
T 2z3z_A 170 VYGQAVHQREFGIEKGTFWSP--KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT 247 (706)
T ss_dssp EESSCCGGGCTTCCCSEEECT--TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE
T ss_pred EcccchhhhhcCCCceEEECC--CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce
Confidence 36777755 557888887 446789999876543
Q ss_pred eeEee--CCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCC-----eEEEEECCCcceeEEEccCCCC
Q 001295 538 RVDYE--APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF-----SIKFWDMDSVQLLTSIDADGGL 610 (1106)
Q Consensus 538 ~~~~~--~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~ 610 (1106)
..... .+...+..++|+|| |+++++++.++ .|++||+.+++....+......
T Consensus 248 ~~~~~~~~~~~~~~~~~~spd---------------------g~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~ 306 (706)
T 2z3z_A 248 VYLQTGEPKEKFLTNLSWSPD---------------------ENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDK 306 (706)
T ss_dssp EECCCCSCTTCEEEEEEECTT---------------------SSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECS
T ss_pred EeeccCCCCceeEeeEEEECC---------------------CCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCC
Confidence 32221 22334445555554 45677766654 8999999998433333211111
Q ss_pred ---CCcCeEEEcc--CCCEEEEEeCCCcEEEEEcc
Q 001295 611 ---PASPRIRFNK--DGCLLAVSTNDNGIKILATS 640 (1106)
Q Consensus 611 ---~~v~~v~~s~--~~~~l~~~~~dg~i~iwd~~ 640 (1106)
..+.+++|+| ||++++++..++.+++|.+.
T Consensus 307 ~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 307 HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred CeECccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence 2346789999 99999999999999888764
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=2.2e-21 Score=239.26 Aligned_cols=284 Identities=10% Similarity=0.072 Sum_probs=203.2
Q ss_pred ccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCC
Q 001295 743 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 822 (1106)
Q Consensus 743 ~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~ 822 (1106)
...|.+++|+|| +.++.+ .++.+++||+.+ +..... . .+...+.+++|||||
T Consensus 81 ~~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~----------------------~~~~~l--~--~~~~~~~~~~~SpdG 132 (706)
T 2z3z_A 81 AFPSFRTLDAGR-GLVVLF-TQGGLVGFDMLA----------------------RKVTYL--F--DTNEETASLDFSPVG 132 (706)
T ss_dssp -CCCEEEEETTT-TEEEEE-ETTEEEEEETTT----------------------TEEEEE--E--CCTTCCTTCEECTTS
T ss_pred ccCceeEEECCC-CeEEEE-ECCEEEEEECCC----------------------CceEEc--c--CCcccccCCcCCCCC
Confidence 356899999999 656555 458999998753 222111 1 145567889999999
Q ss_pred CEEEEEeCCeEEEEEcCC-----CceeeeecCCCCC--------------eeEEEEecCCCceEEEee------------
Q 001295 823 SYVMSASGGKISLFNMMT-----FKTMATFMPPPPA--------------ATFLAFHPQDNNIIAIGM------------ 871 (1106)
Q Consensus 823 ~~l~~~sdg~i~vwd~~~-----~~~~~~~~~~~~~--------------v~~l~~s~~d~~~la~g~------------ 871 (1106)
++|+++.++.|++||+.+ ++.......+... +.+++||| |+++|++++
T Consensus 133 ~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~ 211 (706)
T 2z3z_A 133 DRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIV 211 (706)
T ss_dssp SEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEE
T ss_pred CEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEee
Confidence 999998899999999998 7766554444333 48999999 899999887
Q ss_pred ---------------------CCCcEEEEEeecceEEEEec--CcccCeeEEEEecCCCEEEEEcCCC-----cEEEEeC
Q 001295 872 ---------------------DDSSIQIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSSGADS-----QLCVWSS 923 (1106)
Q Consensus 872 ---------------------~dg~v~iwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~s~s~Dg-----~i~vwd~ 923 (1106)
.+..|++||+.+++...... .|...+.+++|+|||++|++++.|+ .|++||+
T Consensus 212 ~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~ 291 (706)
T 2z3z_A 212 DYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDA 291 (706)
T ss_dssp ECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEET
T ss_pred ccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEEC
Confidence 45789999999988655442 5777899999999999999988775 8999999
Q ss_pred CCcccccceeecccCCCCCCCCCCceEEEcC--CCcEEEEE-eCCeEEEEecC-CceEeeecccCCCCCCeeE-EEECCC
Q 001295 924 DGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ--DQIHFLVV-HETQLAIFETT-KLECVKQWVPRESSAPITH-ATFSCD 998 (1106)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--dg~~l~~~-~d~~v~i~d~~-~~~~~~~~~~~~h~~~v~~-l~~s~d 998 (1106)
.+++.... .... ........+..++|+| ||++++++ .++.+++|++. ++..+..+. .|...+.+ ++|+||
T Consensus 292 ~~g~~~~~-~~~~--~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~--~~~~~v~~~~~~spd 366 (706)
T 2z3z_A 292 ETGRFVRT-LFVE--TDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT--KGEWEVTNFAGFDPK 366 (706)
T ss_dssp TTCCEEEE-EEEE--ECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC--CSSSCEEEEEEECTT
T ss_pred CCCceeeE-EEEc--cCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC--CCCeEEEeeeEEcCC
Confidence 98732211 1111 1111111346789999 99988885 66778888775 566666654 56677877 799999
Q ss_pred CCEEEEEEcC-C----eEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCC----CcEEEEee
Q 001295 999 SQLVYACFLD-A----TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD----GGVHVFEP 1069 (1106)
Q Consensus 999 ~~~l~t~s~D-g----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~D----g~v~vW~~ 1069 (1106)
|+.|+.++.+ + .|+.||+.+++.. .+. + ...+. .++|+| |+++++..+.+ +.|++||+
T Consensus 367 g~~l~~~~~~~~~~~~~l~~~d~~~~~~~-~l~------~---~~~~~--~~~~sp-dg~~l~~~~~~~~~p~~i~l~d~ 433 (706)
T 2z3z_A 367 GTRLYFESTEASPLERHFYCIDIKGGKTK-DLT------P---ESGMH--RTQLSP-DGSAIIDIFQSPTVPRKVTVTNI 433 (706)
T ss_dssp SSEEEEEESSSCTTCBEEEEEETTCCCCE-ESC------C---SSSEE--EEEECT-TSSEEEEEEECSSCSCEEEEEES
T ss_pred CCEEEEEecCCCCceEEEEEEEcCCCCce-ecc------C---CCceE--EEEECC-CCCEEEEEecCCCCCcEEEEEEC
Confidence 9988766544 3 6777788777633 222 1 11244 799999 68887766444 46999999
Q ss_pred cCCC
Q 001295 1070 LESE 1073 (1106)
Q Consensus 1070 ~~~~ 1073 (1106)
.+++
T Consensus 434 ~~~~ 437 (706)
T 2z3z_A 434 GKGS 437 (706)
T ss_dssp SSCE
T ss_pred CCCe
Confidence 8876
No 138
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.89 E-value=4.8e-21 Score=213.38 Aligned_cols=300 Identities=10% Similarity=0.140 Sum_probs=200.2
Q ss_pred cccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecC-ceEEEeeccccccCCCCcccccc
Q 001295 709 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATASV 787 (1106)
Q Consensus 709 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~ 787 (1106)
+++++.++.|.+|++...........+ .+...+..++|+|+++++++++.+ +.+.+|++...
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~------------ 70 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGALTLTQVV-----DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD------------ 70 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEE-----ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTT------------
T ss_pred EEeCCCCCeEEEEEECCCCcEEEeeeE-----ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCC------------
Confidence 344477899999999642211122221 255678899999999988888886 99999987511
Q ss_pred CccccCCCCCCccc-cccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEc---CCCceeeeecCCCCCeeEEEEec
Q 001295 788 APQLWQPPSGIMMT-NDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNM---MTFKTMATFMPPPPAATFLAFHP 861 (1106)
Q Consensus 788 ~~~~w~~~~~~~~~-~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~---~~~~~~~~~~~~~~~v~~l~~s~ 861 (1106)
++.... ..+. ....+..++|+|++++|++++ ++.|.+||+ ...+....+..+ ..+.+++|+|
T Consensus 71 --------~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~ 138 (343)
T 1ri6_A 71 --------DGALTFAAESA---LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP 138 (343)
T ss_dssp --------TCCEEEEEEEE---CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT
T ss_pred --------CCceeeccccc---cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC
Confidence 111110 0011 123678999999999887776 688999999 444455555543 4589999999
Q ss_pred CCCceEEEee-CCCcEEEEEeec-ceEEE----EecC-cccCeeEEEEecCCCEEEEE-cCCCcEEEEeCCC--cccccc
Q 001295 862 QDNNIIAIGM-DDSSIQIYNVRV-DEVKS----KLKG-HSKRITGLAFSHALNVLVSS-GADSQLCVWSSDG--WEKQKN 931 (1106)
Q Consensus 862 ~d~~~la~g~-~dg~v~iwd~~~-~~~~~----~l~~-h~~~V~~l~~s~d~~~l~s~-s~Dg~i~vwd~~~--~~~~~~ 931 (1106)
++++|++++ .++.|++||+.+ ++... .+.. ....+.+++|+|++++|+++ ..++.|.+|++.. ++....
T Consensus 139 -dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~ 217 (343)
T 1ri6_A 139 -DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECV 217 (343)
T ss_dssp -TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEE
T ss_pred -CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEE
Confidence 787777776 899999999987 65432 2332 34578899999999977554 5889999999954 332111
Q ss_pred eeecccCCCCCCCCCCceEEEcCCCcEEEE-E-eCCeEEEEecC----CceEeeecccCCCCCCeeEEEECCCCCEEEEE
Q 001295 932 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQLAIFETT----KLECVKQWVPRESSAPITHATFSCDSQLVYAC 1005 (1106)
Q Consensus 932 ~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~-~d~~v~i~d~~----~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~ 1005 (1106)
...............+..++|+|+|++|++ . .++.|.+||+. +.+.+..+. .+. .+.+++|+|||++|+++
T Consensus 218 ~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~--~~~-~~~~~~~s~dg~~l~~~ 294 (343)
T 1ri6_A 218 QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP--TET-QPRGFNVDHSGKYLIAA 294 (343)
T ss_dssp EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE--CSS-SCCCEEECTTSSEEEEE
T ss_pred eeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec--CCC-ccceEEECCCCCEEEEe
Confidence 122211111111124557999999998886 4 57899999998 334444443 223 38999999999998888
Q ss_pred E-cCCeEEEEEc--CCceeEEeeCCCcccCCCCCCCCccceEEEEeCC
Q 001295 1006 F-LDATVCVFSA--ANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1050 (1106)
Q Consensus 1006 s-~Dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 1050 (1106)
+ .|+.|.+|++ .++++...-. ++.+ ..|..++|.++
T Consensus 295 ~~~~~~v~v~~~d~~~g~~~~~~~----~~~g-----~~p~~i~~~~~ 333 (343)
T 1ri6_A 295 GQKSHHISVYEIVGEQGLLHEKGR----YAVG-----QGPMWVVVNAH 333 (343)
T ss_dssp CTTTCEEEEEEEETTTTEEEEEEE----EECS-----SSCCEEEEEEE
T ss_pred cCCCCeEEEEEEcCCCceeeEccc----cccC-----CCCeeEEEEcc
Confidence 7 6899999955 4665432211 1112 23457888874
No 139
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=1.5e-21 Score=241.65 Aligned_cols=384 Identities=12% Similarity=0.083 Sum_probs=242.4
Q ss_pred CeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCC---eeEEEEEecCCCeEEEeeeccceeEEEEcCCCC
Q 001295 503 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR---WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 579 (1106)
Q Consensus 503 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~ 579 (1106)
.+.+++|++ +|+++++ +.||.|++||+.+++....+..+.. .+.+++|+|||+
T Consensus 18 ~~~~~~~sp--dg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~--------------------- 73 (723)
T 1xfd_A 18 HDPEAKWIS--DTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDRE--------------------- 73 (723)
T ss_dssp CCCCCCBSS--SSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSS---------------------
T ss_pred cccccEEcC--CCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCC---------------------
Confidence 356677765 4566665 7899999999998877666554433 255555555555
Q ss_pred EEEEEECC---------CeEEEEECCCcceeEEEcc-CCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhh
Q 001295 580 RFLAAGDD---------FSIKFWDMDSVQLLTSIDA-DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649 (1106)
Q Consensus 580 ~l~~~~~d---------~~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 649 (1106)
+|++++.+ +.|++||+.+++. ..+.. ..+...+..++|||||++|+.++. +.|++||+.++ +..+..
T Consensus 74 ~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g-~~~~~~ 150 (723)
T 1xfd_A 74 YALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGK-QAIRVV 150 (723)
T ss_dssp EEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSS-CCEEEE
T ss_pred EEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCC-ceEEEe
Confidence 67777653 7899999999876 33332 222334889999999999999987 79999998876 222211
Q ss_pred cccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCC
Q 001295 650 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 729 (1106)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~ 729 (1106)
..+...+ +..|.. -|-..
T Consensus 151 ~~~~~~~----------------------------------------------------~~~g~~-----~~v~~----- 168 (723)
T 1xfd_A 151 STGKEGV----------------------------------------------------IYNGLS-----DWLYE----- 168 (723)
T ss_dssp CCCBTTT----------------------------------------------------EEEEEC-----CHHHH-----
T ss_pred cCCCCCc----------------------------------------------------eECccc-----ceeEE-----
Confidence 1100000 000000 00000
Q ss_pred ccceecccCccccccceEEEEEcCCCceEEEeecC-ceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCC
Q 001295 730 NQCRSLRLPENLRATKISRLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN 808 (1106)
Q Consensus 730 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 808 (1106)
..-...+.+++|+|||+.|++++.+ +.+.+|++... .+ .
T Consensus 169 ----------ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~--------------------~~----------~ 208 (723)
T 1xfd_A 169 ----------EEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTY--------------------TG----------S 208 (723)
T ss_dssp ----------HTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCC--------------------SS----------S
T ss_pred ----------EEeccCcceEEECCCCCEEEEEEECCCccceEEeecc--------------------CC----------c
Confidence 0011345789999999999988865 45666654310 00 0
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCC------CCCeeEEEEecCCCceEEEeeC----CCcEEE
Q 001295 809 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP------PPAATFLAFHPQDNNIIAIGMD----DSSIQI 878 (1106)
Q Consensus 809 ~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~------~~~v~~l~~s~~d~~~la~g~~----dg~v~i 878 (1106)
+...+..+.|.++|.. ..+..|++||+.+++....+..+ ...+..++||| |+++|++... +..|++
T Consensus 209 ~~~~~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~ 284 (723)
T 1xfd_A 209 IYPTVKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTL 284 (723)
T ss_dssp SSCCCEEEECCBTTSC---CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEE
T ss_pred CCCcceeccCCCCCCC---CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEE
Confidence 2234678888888763 12468999999998866666554 56789999999 8888877653 358999
Q ss_pred EEeecceEEEEecCc-ccCee----EEEEecCCCEEEE--EcCCC------cEEEEe-CCCcccccceeecccCCCCCCC
Q 001295 879 YNVRVDEVKSKLKGH-SKRIT----GLAFSHALNVLVS--SGADS------QLCVWS-SDGWEKQKNRFLQIPTGRTPTA 944 (1106)
Q Consensus 879 wd~~~~~~~~~l~~h-~~~V~----~l~~s~d~~~l~s--~s~Dg------~i~vwd-~~~~~~~~~~~~~~~~~~~~~~ 944 (1106)
||+.++++...+..+ ...+. .++|+|||+.|+. +..|+ .|.+|| ..+++... ......++
T Consensus 285 ~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~--~~~l~~~~---- 358 (723)
T 1xfd_A 285 CDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDN--IQSITSGD---- 358 (723)
T ss_dssp EETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCC--CCBSCCSS----
T ss_pred EeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccc--eeEeecCC----
Confidence 999998877666543 34343 8899999997775 45666 466677 33332000 11111121
Q ss_pred CCCce-EEEcCCCcEEEE-EeC---CeEEEEecCCce--EeeecccC-CCCCCeeEEEECCCCCEEEEEEcC-C--eEEE
Q 001295 945 QSDTR-VQFHQDQIHFLV-VHE---TQLAIFETTKLE--CVKQWVPR-ESSAPITHATFSCDSQLVYACFLD-A--TVCV 1013 (1106)
Q Consensus 945 ~~i~~-~~~s~dg~~l~~-~~d---~~v~i~d~~~~~--~~~~~~~~-~h~~~v~~l~~s~d~~~l~t~s~D-g--~i~v 1013 (1106)
..+.. ++|+|||+.|+. +.+ +.+++|++.... ....+... .|...+..++|||||++|+..... . ...+
T Consensus 359 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~ 438 (723)
T 1xfd_A 359 WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTV 438 (723)
T ss_dssp SCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEE
T ss_pred eEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEE
Confidence 12333 689999999987 444 779999986432 23333210 156778999999999998865432 2 2445
Q ss_pred EEcCCceeEEee
Q 001295 1014 FSAANLKLRCRI 1025 (1106)
Q Consensus 1014 wd~~~~~~~~~~ 1025 (1106)
++..++..+..+
T Consensus 439 ~~~~~~~~~~~~ 450 (723)
T 1xfd_A 439 HNTTDKKKMFDL 450 (723)
T ss_dssp EETTTCCEEEEE
T ss_pred EECCCCCEEEEe
Confidence 566666554433
No 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=9.3e-21 Score=211.06 Aligned_cols=248 Identities=12% Similarity=0.155 Sum_probs=175.5
Q ss_pred CCCCeeEEEEecCCCEEEEEe-C-CeEEEEEcC--CCc--eeeeecCCCCCeeEEEEecCCCceEEEee-CCCcEEEEEe
Q 001295 809 PEEAVPCFALSKNDSYVMSAS-G-GKISLFNMM--TFK--TMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNV 881 (1106)
Q Consensus 809 ~~~~v~~l~~s~~~~~l~~~s-d-g~i~vwd~~--~~~--~~~~~~~~~~~v~~l~~s~~d~~~la~g~-~dg~v~iwd~ 881 (1106)
+...+.+++|+|++++|++++ + +.|.+|++. +++ .+..+..+. .+..++|+| ++++|++++ .++.|++||+
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEEC
Confidence 566788899999999988887 4 899999997 554 334454444 789999999 787666555 5889999999
Q ss_pred ---ecceEEEEecCcccCeeEEEEecCCCEEEEEc-CCCcEEEEeCCC-cccccce--eecccCCCCCCCCCCceEEEcC
Q 001295 882 ---RVDEVKSKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDG-WEKQKNR--FLQIPTGRTPTAQSDTRVQFHQ 954 (1106)
Q Consensus 882 ---~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~~-~~~~~~~--~~~~~~~~~~~~~~i~~~~~s~ 954 (1106)
.+++.+..+..+. .+.+++|+|||++|++++ .|+.|.+||+.+ ++..... ......+ ..+..++|+|
T Consensus 114 ~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p 187 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGLD-GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG-----AGPRHMVFHP 187 (343)
T ss_dssp ETTEEEEEEEEECCCT-TBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT-----CCEEEEEECT
T ss_pred CCCccccccccccCCC-CceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCC-----CCcceEEECC
Confidence 5555666666544 589999999999888777 899999999987 4332111 1222222 2567899999
Q ss_pred CCcEEEE-E-eCCeEEEEecCC--ceE--eeecc--cCCC--CCCeeEEEECCCCCEEEEEE-cCCeEEEEEcC--C--c
Q 001295 955 DQIHFLV-V-HETQLAIFETTK--LEC--VKQWV--PRES--SAPITHATFSCDSQLVYACF-LDATVCVFSAA--N--L 1019 (1106)
Q Consensus 955 dg~~l~~-~-~d~~v~i~d~~~--~~~--~~~~~--~~~h--~~~v~~l~~s~d~~~l~t~s-~Dg~i~vwd~~--~--~ 1019 (1106)
+|+++++ + .++.|.+|++.. ++. ..... ..++ ...+.+++|+|||++|+++. .|+.|++||+. + .
T Consensus 188 dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~ 267 (343)
T 1ri6_A 188 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL 267 (343)
T ss_dssp TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCce
Confidence 9998766 4 678999999953 332 22211 1111 34677899999999887544 78999999998 3 3
Q ss_pred eeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEe-CCCcEEEEeecCCCCcc
Q 001295 1020 KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLESEGKW 1076 (1106)
Q Consensus 1020 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~-~Dg~v~vW~~~~~~~~~ 1076 (1106)
+.+..+. .+ .. +..++|+| |+++|++++ .|+.|.+|++....+.+
T Consensus 268 ~~~~~~~------~~--~~---~~~~~~s~-dg~~l~~~~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 268 SKEGFQP------TE--TQ---PRGFNVDH-SGKYLIAAGQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp EEEEEEE------CS--SS---CCCEEECT-TSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred EEeeeec------CC--Cc---cceEEECC-CCCEEEEecCCCCeEEEEEEcCCCcee
Confidence 3443333 11 11 33699999 688877777 68999999876544333
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=4.5e-20 Score=204.33 Aligned_cols=240 Identities=13% Similarity=0.096 Sum_probs=172.5
Q ss_pred EEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeC-CC
Q 001295 356 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS-RH 434 (1106)
Q Consensus 356 ~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-d~ 434 (1106)
..|.+++.+++++++.++.|.+||..+++.... +..+...+ +++|+|||++|++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 457788888899999999999999999887653 23334556 9999999997777665 88
Q ss_pred eEEEEEccCCce-eeeeeeeccccCCeeEEEEcCCCCceEEEEecCC-C--cEEEEeCCCCceeEEEeccCCCeEEEecc
Q 001295 435 IVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-K--TIKVWDATNGAKQYIFEGHEAPVYSVCPH 510 (1106)
Q Consensus 435 ~v~iwd~~~~~~-~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d-~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 510 (1106)
.|.+||+.+++. .. .+..+..++.+++|+|+|+ +++++..+ + .|.+||+.+++.+..+..+ ....+++|+
T Consensus 63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s 136 (331)
T 3u4y_A 63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS 136 (331)
T ss_dssp EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence 999999999876 33 4555666666699999999 56655554 3 8999999999988887754 456888886
Q ss_pred ccCCceEEEEEecCCe-EEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEE-CCC
Q 001295 511 HKENIQFIFSTALDGK-IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDF 588 (1106)
Q Consensus 511 ~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~ 588 (1106)
++.. .++++...++. |.+|++.......... ....+.+ .....+.|+|+++++++++ .++
T Consensus 137 pdg~-~l~~~~~~~~~~i~~~~~~~~g~~~~~~--------~~~~~~~---------~~~~~~~~spdg~~l~v~~~~~~ 198 (331)
T 3u4y_A 137 PNGN-GLILIDRSSANTVRRFKIDADGVLFDTG--------QEFISGG---------TRPFNITFTPDGNFAFVANLIGN 198 (331)
T ss_dssp TTSS-CEEEEEETTTTEEEEEEECTTCCEEEEE--------EEEECSS---------SSEEEEEECTTSSEEEEEETTTT
T ss_pred CCCC-EEEEEecCCCceEEEEEECCCCcEeecC--------CccccCC---------CCccceEECCCCCEEEEEeCCCC
Confidence 6542 24555566688 9999998654432211 0000111 1345566777777665554 689
Q ss_pred eEEEEECCCcce---eEEEccCCCCCCcCeEEEccCCCEEEEEe-CCCcEEEEEccCC
Q 001295 589 SIKFWDMDSVQL---LTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG 642 (1106)
Q Consensus 589 ~i~iwd~~~~~~---~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~ 642 (1106)
.|++||+.+++. +..+... ..+..++|+|||++++++. .++.|.+||..++
T Consensus 199 ~v~v~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~ 253 (331)
T 3u4y_A 199 SIGILETQNPENITLLNAVGTN---NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG 253 (331)
T ss_dssp EEEEEECSSTTSCEEEEEEECS---SCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred eEEEEECCCCcccceeeeccCC---CCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence 999999999988 7777644 3478899999999777665 4778999998876
No 142
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=3.2e-20 Score=205.55 Aligned_cols=285 Identities=13% Similarity=0.062 Sum_probs=197.2
Q ss_pred EEcCCCce-EEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEE
Q 001295 750 IFTNSGNA-ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA 828 (1106)
Q Consensus 750 ~~s~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~ 828 (1106)
.|.++++. +++...++.|.+||.. +++...... . +...+ .++|+|++++++++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~----------------------~~~~~~~~~-~--~~~~~-~~~~s~dg~~l~~~ 57 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTD----------------------TLEILNQIT-L--GYDFV-DTAITSDCSNVVVT 57 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETT----------------------TCCEEEEEE-C--CCCEE-EEEECSSSCEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCc----------------------ccceeeeEE-c--cCCcc-eEEEcCCCCEEEEE
Confidence 45555555 5566668999998865 333322211 1 34455 99999999977766
Q ss_pred e--CCeEEEEEcCCCce-eeeecCCCCCeeEEEEecCCCceEEEeeCCC---cEEEEEeecceEEEEecCcccCeeEEEE
Q 001295 829 S--GGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDS---SIQIYNVRVDEVKSKLKGHSKRITGLAF 902 (1106)
Q Consensus 829 s--dg~i~vwd~~~~~~-~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg---~v~iwd~~~~~~~~~l~~h~~~V~~l~~ 902 (1106)
+ ++.|.+||..+++. ...+..+.....+++|+| ++++|+++..++ .|++||+.+++.+..+..+. ...+++|
T Consensus 58 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~ 135 (331)
T 3u4y_A 58 SDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAI 135 (331)
T ss_dssp ESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEE
T ss_pred eCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEE
Confidence 5 68999999999887 667766666555599999 888888666553 89999999999888876544 4689999
Q ss_pred ecCCCEEEE-EcCCCc-EEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-E-eCCeEEEEecCCceE-
Q 001295 903 SHALNVLVS-SGADSQ-LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQLAIFETTKLEC- 977 (1106)
Q Consensus 903 s~d~~~l~s-~s~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~-~d~~v~i~d~~~~~~- 977 (1106)
+|||++|++ ...++. |.+|++................ ...+..++|+|||+++++ + .++.|.+||+.+++.
T Consensus 136 spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~ 211 (331)
T 3u4y_A 136 SPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG----GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI 211 (331)
T ss_dssp CTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS----SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC
T ss_pred CCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC----CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc
Confidence 999985554 455688 9999988643211110111111 124689999999997766 4 578999999999887
Q ss_pred --eeecccCCCCCCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCcee--EEeeCCCcccCCCCCCCCccceEEEEeCCCC
Q 001295 978 --VKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKL--RCRINPSAYLPAGVSSSNVHPLVIAAHPQEP 1052 (1106)
Q Consensus 978 --~~~~~~~~h~~~v~~l~~s~d~~~l~t~s-~Dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~ 1052 (1106)
+..+.. ...+..++|+|||++|++++ .++.|.+||+.+++. +..+.......... .... -.++|+| |+
T Consensus 212 ~~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~sp-dg 284 (331)
T 3u4y_A 212 TLLNAVGT---NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRP-LFGA--NQMALNK-TE 284 (331)
T ss_dssp EEEEEEEC---SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGG-GTTC--CCEEECT-TS
T ss_pred ceeeeccC---CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCC-cccc--cceEECC-CC
Confidence 666652 46778999999999876665 478899999999987 33332110000000 0001 2589999 67
Q ss_pred CEEEE-EeCCCcEEEEeecCCC
Q 001295 1053 NEFAL-GLSDGGVHVFEPLESE 1073 (1106)
Q Consensus 1053 ~~l~t-~~~Dg~v~vW~~~~~~ 1073 (1106)
++|++ +..++.|.+|++.+..
T Consensus 285 ~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 285 TKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp SEEEEEETTTTEEEEEETTSCE
T ss_pred CEEEEecCCCCcEEEEEecCCc
Confidence 77654 5556799999998766
No 143
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=1.3e-19 Score=202.72 Aligned_cols=273 Identities=11% Similarity=0.109 Sum_probs=205.6
Q ss_pred ccceEEEEEcCCCceEEEeec-------CceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeE
Q 001295 743 ATKISRLIFTNSGNAILALAS-------NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 815 (1106)
Q Consensus 743 ~~~i~~~~~s~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~ 815 (1106)
...+..++|+|+++.+++++. ++.|.+||.. +++...... ....+..
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~----------------------~~~~~~~~~----~~~~~~~ 93 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPV----------------------TLEVTQAIH----NDLKPFG 93 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTT----------------------TCCEEEEEE----ESSCCCS
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCC----------------------CCeEEEEEe----cCCCcce
Confidence 456789999999998887774 4578777654 333222111 2334678
Q ss_pred EEEecCCCEEEEEe--CCeEEEEEcCCCceeeeecCCCCC---------eeEEEEecCCCceEEEee--CCCcEEEEEee
Q 001295 816 FALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPA---------ATFLAFHPQDNNIIAIGM--DDSSIQIYNVR 882 (1106)
Q Consensus 816 l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~---------v~~l~~s~~d~~~la~g~--~dg~v~iwd~~ 882 (1106)
++++|++++++++. ++.|.+||..+++.+..+..+... +.+++|+| +++++++++ .++.|++||..
T Consensus 94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~ 172 (353)
T 3vgz_A 94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGG 172 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETT
T ss_pred EEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCC
Confidence 99999999776665 689999999999988877654322 68899999 777666655 47899999999
Q ss_pred cceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE
Q 001295 883 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 962 (1106)
Q Consensus 883 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 962 (1106)
+++.+..+..+...+.+++|+|||++|++++.++.|.+||+.+++..... .. +.......+..++|+|+|++++++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~--~~--~~~~~~~~~~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 173 NIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRK--KL--LDDGKEHFFINISLDTARQRAFIT 248 (353)
T ss_dssp TTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEE--EC--CCSSSCCCEEEEEEETTTTEEEEE
T ss_pred CCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEE--Ec--CCCCCCcccceEEECCCCCEEEEE
Confidence 99999888867777899999999999999999999999999987643221 11 111111245679999999988774
Q ss_pred --eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCceeEEeeCCCcccCCCCCCCC
Q 001295 963 --HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1039 (1106)
Q Consensus 963 --~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1106)
.++.|.+||..+++.+..+.... ...++|+|||++|++++ .++.|.+||..+++.+..+.. +
T Consensus 249 ~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~----~------- 313 (353)
T 3vgz_A 249 DSKAAEVLVVDTRNGNILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT----P------- 313 (353)
T ss_dssp ESSSSEEEEEETTTCCEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC----C-------
T ss_pred eCCCCEEEEEECCCCcEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec----C-------
Confidence 45899999999999888776422 25799999999766665 689999999999998887751 1
Q ss_pred ccceEEEEeCCCCCEEEEEeCCC
Q 001295 1040 VHPLVIAAHPQEPNEFALGLSDG 1062 (1106)
Q Consensus 1040 v~~~~~~~~~~d~~~l~t~~~Dg 1062 (1106)
..+..++|+| |+++|+++..++
T Consensus 314 ~~~~~~~~s~-dg~~l~v~~~~~ 335 (353)
T 3vgz_A 314 THPNSLALSA-DGKTLYVSVKQK 335 (353)
T ss_dssp SEEEEEEECT-TSCEEEEEEECC
T ss_pred CCCCeEEEcC-CCCEEEEEEccc
Confidence 1344899999 688776666553
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=2.3e-20 Score=207.33 Aligned_cols=267 Identities=12% Similarity=0.063 Sum_probs=199.3
Q ss_pred ceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCC-CeeEEEEecCCCEEEEEe--CCe
Q 001295 756 NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE-AVPCFALSKNDSYVMSAS--GGK 832 (1106)
Q Consensus 756 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~v~~l~~s~~~~~l~~~s--dg~ 832 (1106)
+++++++.++.|.+||+.+ +........+ +.. .+..++|+|++++++++. ++.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~----------------------~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~v~~~~~~~ 57 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEK----------------------MAVDKVITIA--DAGPTPMVPMVAPGGRIAYATVNKSES 57 (337)
T ss_dssp EEEEEEETTTEEEEEETTT----------------------TEEEEEEECT--TCTTCCCCEEECTTSSEEEEEETTTTE
T ss_pred cEEEEcCCCCeEEEEECCC----------------------CcEEEEEEcC--CCCCCccceEEcCCCCEEEEEeCCCCe
Confidence 3578888899999998753 2222111100 111 477899999998776554 689
Q ss_pred EEEEEcCCCceeeeecCCC-----CCeeEEEEecCCCceEEEee------------CCCcEEEEEeecceEEEEecCccc
Q 001295 833 ISLFNMMTFKTMATFMPPP-----PAATFLAFHPQDNNIIAIGM------------DDSSIQIYNVRVDEVKSKLKGHSK 895 (1106)
Q Consensus 833 i~vwd~~~~~~~~~~~~~~-----~~v~~l~~s~~d~~~la~g~------------~dg~v~iwd~~~~~~~~~l~~h~~ 895 (1106)
|.+||+.+++.+..+.... ..+..++|+| ++++|+++. .++.|++||+.+++.+..+.. ..
T Consensus 58 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~ 135 (337)
T 1pby_B 58 LVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PR 135 (337)
T ss_dssp EEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CS
T ss_pred EEEEECCCCCeEeeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CC
Confidence 9999999998877665321 2577899999 888888876 579999999999988877765 45
Q ss_pred CeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEe--CC--------
Q 001295 896 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--ET-------- 965 (1106)
Q Consensus 896 ~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~--d~-------- 965 (1106)
.+.+++|+|||++|+++ ++.|.+||+.+++... .+. .+. ....+.|+|||++++++. ++
T Consensus 136 ~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~--~~~--~~~-----~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 204 (337)
T 1pby_B 136 QITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVE--DKP--IQS-----WEAETYAQPDVLAVWNQHESSGVMATPFYT 204 (337)
T ss_dssp SCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEE--EEC--STT-----TTTTTBCCCBCCCCCCCCTTTTEEEEEEEE
T ss_pred CcceeEECCCCCEEEEe--CCeEEEEECCCCcEee--eee--ccc-----cCCCceeCCCccEEeeeccCCCceeeeeec
Confidence 68899999999988888 6889999999865422 111 111 012337899998776532 22
Q ss_pred ---------------eEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcc
Q 001295 966 ---------------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1030 (1106)
Q Consensus 966 ---------------~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~ 1030 (1106)
.|.+||+.+++.. .+....+...+.+++|+|||++|+++ ++.|++||+.+++.+..+..
T Consensus 205 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~--- 278 (337)
T 1pby_B 205 ARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL--- 278 (337)
T ss_dssp EBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC---
T ss_pred cccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC---
Confidence 5789999998876 44444566788999999999999988 79999999999998877651
Q ss_pred cCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCCC
Q 001295 1031 LPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1074 (1106)
Q Consensus 1031 ~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~~ 1074 (1106)
+.. +. .++|+| |+++|++++.|+.|.+||+.+++.
T Consensus 279 -~~~-----~~--~~~~s~-dg~~l~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 279 -PHS-----YY--SVNVST-DGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp -SSC-----CC--EEEECT-TSCEEEEESBSSEEEEEETTTCCE
T ss_pred -CCc-----ee--eEEECC-CCCEEEEEcCCCcEEEEECcCCcE
Confidence 111 33 799999 688888889999999999999883
No 145
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=4.6e-20 Score=204.88 Aligned_cols=181 Identities=12% Similarity=0.074 Sum_probs=141.8
Q ss_pred CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEE
Q 001295 830 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVL 909 (1106)
Q Consensus 830 dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l 909 (1106)
++.|.+||+.+++.+..+.. ...+.+++|+| ++++|+++ ++.|++||+.+++.+..+..+... ..+.|+||++.|
T Consensus 114 ~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l 188 (337)
T 1pby_B 114 PTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAV 188 (337)
T ss_dssp CCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCC
T ss_pred CceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEE
Confidence 58999999999888777764 45688899999 88878777 689999999999988777655411 134789999877
Q ss_pred EEEcCCC------------------------cEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCC
Q 001295 910 VSSGADS------------------------QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 965 (1106)
Q Consensus 910 ~s~s~Dg------------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~ 965 (1106)
+..+.++ .|.+||+.+++.. . +... .+. ..+..++|+|||++++++ ++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~--~~~~-~~~---~~~~~~~~s~dg~~l~~~-~~ 260 (337)
T 1pby_B 189 WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-M--REVR-IMD---VFYFSTAVNPAKTRAFGA-YN 260 (337)
T ss_dssp CCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-E--EEEE-ECS---SCEEEEEECTTSSEEEEE-ES
T ss_pred eeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-E--eecC-CCC---CceeeEEECCCCCEEEEe-CC
Confidence 6554332 4689999887643 1 1111 111 245789999999999888 79
Q ss_pred eEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295 966 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus 966 ~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
.|.+||+.+++.+..+.. ...+.+++|+|||++|++++.|+.|++||+.+++.+..+.
T Consensus 261 ~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 261 VLESFDLEKNASIKRVPL---PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp EEEEEETTTTEEEEEEEC---SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred eEEEEECCCCcCcceecC---CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 999999999988877653 3467899999999999999999999999999999988876
No 146
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=1.7e-19 Score=201.76 Aligned_cols=246 Identities=11% Similarity=0.077 Sum_probs=181.4
Q ss_pred ccCCCCcEEEEEecCCCeEEEEEec------cCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEE
Q 001295 347 LNQGSSPMSMDFHPVQQTLLLVGTN------VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 420 (1106)
Q Consensus 347 ~~h~~~v~~~~~sp~g~~llatg~~------dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 420 (1106)
......+..++|+|+|++++++... ++.|.+||..+++.+.... ....+..++|
T Consensus 37 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------------------~~~~~~~~~~ 96 (353)
T 3vgz_A 37 KAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--------------------NDLKPFGATI 96 (353)
T ss_dssp EEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------------------ESSCCCSEEE
T ss_pred hhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------------------cCCCcceEEE
Confidence 3456788999999999975554433 6789999999988765411 1234678999
Q ss_pred ccCCCEEEEE-eCCCeEEEEEccCCceeeeeeeeccccC---------CeeEEEEcCCCCceEEEEecCCCcEEEEeCCC
Q 001295 421 SPDGSLFGVA-YSRHIVQIYSYHGGDEVRQHLEIDAHVG---------GVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 490 (1106)
Q Consensus 421 spdg~~las~-~~d~~v~iwd~~~~~~~~~~~~l~~h~~---------~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 490 (1106)
+|||++++++ ..++.|.+||..+++.+.. +..+.. .+.+++|+|+++.+++...+.++.|.+||..+
T Consensus 97 s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~ 173 (353)
T 3vgz_A 97 NNTTQTLWFGNTVNSAVTAIDAKTGEVKGR---LVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN 173 (353)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTCCEEEE---EESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT
T ss_pred CCCCCEEEEEecCCCEEEEEeCCCCeeEEE---EecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC
Confidence 9999966555 5579999999999887653 333222 27889999999953222224689999999999
Q ss_pred CceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeC----CCCeeEEEEEecCCCeEEEeeec
Q 001295 491 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA----PGRWCTTMAYSADGTRTYQGFRK 566 (1106)
Q Consensus 491 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~~~~~~~~ 566 (1106)
++.+..+..+...+.+++|++ +++++++++.++.|.+||..+.+....+.. +...+..+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--------------- 236 (353)
T 3vgz_A 174 IKLKTAIQNTGKMSTGLALDS--EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINI--------------- 236 (353)
T ss_dssp TEEEEEECCCCTTCCCCEEET--TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEE---------------
T ss_pred CceEEEecCCCCccceEEECC--CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceE---------------
Confidence 999998886666678888755 457888999999999999988766554443 22233444
Q ss_pred cceeEEEEcCCCCEEEEEE-CCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEe-CCCcEEEEEccCC
Q 001295 567 RSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG 642 (1106)
Q Consensus 567 ~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~ 642 (1106)
+++|+++++++++ .++.|.+||..+++.+..+.... ...++|+|+|++++++. .++.|.+||..++
T Consensus 237 ------~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 237 ------SLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY 304 (353)
T ss_dssp ------EEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred ------EECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 4555555666655 45999999999999888887532 35799999999766665 6899999998776
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.86 E-value=2.1e-19 Score=200.33 Aligned_cols=246 Identities=12% Similarity=0.146 Sum_probs=168.0
Q ss_pred CCCCeeEEEEecCCCEEEEEe---CCeEEEEEcCCCc--eeeeecCCCCCeeEEEEecCCCceEEEee-CCCcEEEEEee
Q 001295 809 PEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFK--TMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVR 882 (1106)
Q Consensus 809 ~~~~v~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~--~~~~~~~~~~~v~~l~~s~~d~~~la~g~-~dg~v~iwd~~ 882 (1106)
+...+..++|+|||++++++. ++.|.+|++.+++ .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence 345677899999999444443 3789999997665 3444445677889999999 888887777 78999999996
Q ss_pred c-c--eEEEEecC---------cccCeeEEEEecCCCEEEEEcCCCcEEEEeCC-CcccccceeecccCCCCCCCCCCce
Q 001295 883 V-D--EVKSKLKG---------HSKRITGLAFSHALNVLVSSGADSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQSDTR 949 (1106)
Q Consensus 883 ~-~--~~~~~l~~---------h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~ 949 (1106)
. + +.+..+.. +...+.+++|+|||+++++...++.|.+|++. +++...........+ ..+..
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~ 191 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRH 191 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCce
Confidence 3 2 33333322 12348899999999977777788999999998 433221111122222 24578
Q ss_pred EEEcCCCcEEEEE--eCCeEEEEecCC--ceEe--eecccCCC----CCCeeEEEECCCCCEEE-EEEcCCeEEEEEcCC
Q 001295 950 VQFHQDQIHFLVV--HETQLAIFETTK--LECV--KQWVPRES----SAPITHATFSCDSQLVY-ACFLDATVCVFSAAN 1018 (1106)
Q Consensus 950 ~~~s~dg~~l~~~--~d~~v~i~d~~~--~~~~--~~~~~~~h----~~~v~~l~~s~d~~~l~-t~s~Dg~i~vwd~~~ 1018 (1106)
++|+|||++++++ .++.|.+|++.. ++.. ..+..... ...+..++|+|||++|+ +...++.|.+|++..
T Consensus 192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 9999999977773 568999999874 4432 22221110 14588999999999874 555689999999973
Q ss_pred -c--eeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeC-CCcEEEEeecC
Q 001295 1019 -L--KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS-DGGVHVFEPLE 1071 (1106)
Q Consensus 1019 -~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~-Dg~v~vW~~~~ 1071 (1106)
+ +.+..+.. .+ ..+..++|+| |+++|++++. ++.|.+|++..
T Consensus 272 ~g~~~~~~~~~~-----~~-----~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 272 DGHLTLIQQIST-----EG-----DFPRDFDLDP-TEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp GGCEEEEEEEEC-----SS-----SCCCEEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred CCcEEEeEEEec-----CC-----CCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeC
Confidence 2 33433331 01 2234899999 6888777765 48999996654
No 148
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.85 E-value=1e-18 Score=199.14 Aligned_cols=315 Identities=14% Similarity=0.151 Sum_probs=201.0
Q ss_pred ccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCC
Q 001295 743 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 822 (1106)
Q Consensus 743 ~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~ 822 (1106)
...+..+++++++..+++++.++ +++|+......... .......+........ ..+...|.+++|+|++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~-------~~~~~~v~~l~~spdg 104 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNK---PGDDPNKIVDKVQGLL-------VPMKFPIHHLALSCDN 104 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCC---TTCCTTCEEECCCCEE-------ECCSSCEEEEEECTTS
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcc---cccCcccccccCcccc-------ccCCCcccEEEEcCCC
Confidence 34578899999999999988887 88887643111000 0000000000000000 1256789999999999
Q ss_pred CEEE----EEe-CCeEEEEEcCCC--------ce---eeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceE
Q 001295 823 SYVM----SAS-GGKISLFNMMTF--------KT---MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 886 (1106)
Q Consensus 823 ~~l~----~~s-dg~i~vwd~~~~--------~~---~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~ 886 (1106)
++|+ +++ |+.|+|||+.++ +. +..+.+|...|.+++|+|+++.+||+++.||+|++||+.++..
T Consensus 105 ~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~ 184 (434)
T 2oit_A 105 LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK 184 (434)
T ss_dssp CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE
T ss_pred CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc
Confidence 9999 666 799999998764 11 3556778999999999995489999999999999999999887
Q ss_pred EEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCC-CCCCCCCCceEEEcCCCcEEEE--Ee
Q 001295 887 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG-RTPTAQSDTRVQFHQDQIHFLV--VH 963 (1106)
Q Consensus 887 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~s~dg~~l~~--~~ 963 (1106)
+....+|...|++++|+|+|++|++|+.||+|++||++ ++... .+..... .......+.+++|++++.++++ ..
T Consensus 185 ~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~--~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~ 261 (434)
T 2oit_A 185 VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKK--VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA 261 (434)
T ss_dssp EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEE--EECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccc--cccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence 77778899999999999999999999999999999998 32211 1111111 0011136889999999999877 24
Q ss_pred CC------eEEEEecCCceE-----eeeccc-----CCCCCCeeEEEECCCCCEEEEEEc-CCeEEEEEcCCc--ee-EE
Q 001295 964 ET------QLAIFETTKLEC-----VKQWVP-----RESSAPITHATFSCDSQLVYACFL-DATVCVFSAANL--KL-RC 1023 (1106)
Q Consensus 964 d~------~v~i~d~~~~~~-----~~~~~~-----~~h~~~v~~l~~s~d~~~l~t~s~-Dg~i~vwd~~~~--~~-~~ 1023 (1106)
+| .+++|++.+.+. ...+.. .+...+-..+.+-+|.+++++++. ...|.|...... .. ..
T Consensus 262 dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~ 341 (434)
T 2oit_A 262 DGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESW 341 (434)
T ss_dssp TCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEE
T ss_pred CCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEE
Confidence 43 389999976521 111110 011222233444477777766654 344666654321 11 00
Q ss_pred eeC--CCcccCCCCCCCCccceEEEEe--CCC------------CCEEEEEeCCCcEEEEeecC
Q 001295 1024 RIN--PSAYLPAGVSSSNVHPLVIAAH--PQE------------PNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus 1024 ~~~--~~~~~~~~~~~~~v~~~~~~~~--~~d------------~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
.+. ....+|-........|+.+++. ..+ --.|..-+.||.|..|.+-.
T Consensus 342 ~~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 342 LLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp EECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred eccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 010 1112332222334556655553 211 13577888999999999866
No 149
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=6.9e-20 Score=199.08 Aligned_cols=233 Identities=13% Similarity=0.035 Sum_probs=171.9
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCeEEEEEcCC-CceeeeecCC-CCCeeEEEEecCCCceEEEee--CCCcEEEEEee--
Q 001295 809 PEEAVPCFALSKNDSYVMSASGGKISLFNMMT-FKTMATFMPP-PPAATFLAFHPQDNNIIAIGM--DDSSIQIYNVR-- 882 (1106)
Q Consensus 809 ~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~-~~~~~~~~~~-~~~v~~l~~s~~d~~~la~g~--~dg~v~iwd~~-- 882 (1106)
|...+.+++|+|++++|++++++.|++||+.+ ++.......+ ...+.+++|+| ++++|++++ .++.+.||.+.
T Consensus 40 ~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~ 118 (297)
T 2ojh_A 40 TPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-DGALYAISDKVEFGKSAIYLLPST 118 (297)
T ss_dssp ESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEEEETT
T ss_pred CCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECC-CCCEEEEEEeCCCCcceEEEEECC
Confidence 67789999999999999999999999999999 8877666655 36789999999 899999988 44566666554
Q ss_pred cceEEEEecCcccCeeEEEEecCCCEEE-EEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE
Q 001295 883 VDEVKSKLKGHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 961 (1106)
Q Consensus 883 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~-s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 961 (1106)
+++ ...+..+. .+..++|+||+++|+ +++.|+.++||+++..... ... ...+. ..+..++|+|+|++|++
T Consensus 119 ~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~---~~~-~~~~~---~~~~~~~~s~dg~~l~~ 189 (297)
T 2ojh_A 119 GGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV---ETR-LTHGE---GRNDGPDYSPDGRWIYF 189 (297)
T ss_dssp CCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC---EEE-CCCSS---SCEEEEEECTTSSEEEE
T ss_pred CCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCc---ceE-cccCC---CccccceECCCCCEEEE
Confidence 444 44454444 489999999999887 7888999999986532111 111 11221 36789999999998887
Q ss_pred -E-eCCeEEEEecC-CceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC-----------CeEEEEEcCCceeEEeeCC
Q 001295 962 -V-HETQLAIFETT-KLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----------ATVCVFSAANLKLRCRINP 1027 (1106)
Q Consensus 962 -~-~d~~v~i~d~~-~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D-----------g~i~vwd~~~~~~~~~~~~ 1027 (1106)
+ .++.+++|++. .+..+..+. .|...+.+++|+|||++|++++.+ +.|++||+.+++......
T Consensus 190 ~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~- 266 (297)
T 2ojh_A 190 NSSRTGQMQIWRVRVDGSSVERIT--DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD- 266 (297)
T ss_dssp EECTTSSCEEEEEETTSSCEEECC--CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE-
T ss_pred EecCCCCccEEEECCCCCCcEEEe--cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec-
Confidence 4 47888999875 444555544 567789999999999999988876 569999999887644332
Q ss_pred CcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCC
Q 001295 1028 SAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG 1062 (1106)
Q Consensus 1028 ~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg 1062 (1106)
.. +| ...+. .++|+| |++.|++++.|.
T Consensus 267 ---~~-~~-~~~~~--~~~~sp-dg~~l~~~~~~~ 293 (297)
T 2ojh_A 267 ---LF-GG-QGTMN--SPNWSP-DGDEFAYVRYFP 293 (297)
T ss_dssp ---EE-ES-TTTSC--SCCBCT-TSSEEEEEEECC
T ss_pred ---cC-CC-Ccccc--cceECC-CCCEEEEEEecc
Confidence 11 11 12244 588999 688888777654
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=7e-19 Score=196.06 Aligned_cols=278 Identities=14% Similarity=0.145 Sum_probs=183.8
Q ss_pred CCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeec---CceEEEeeccccccCCCCccccccCcc
Q 001295 714 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS---NAIHLLWKWQRTERNSSGKATASVAPQ 790 (1106)
Q Consensus 714 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~ 790 (1106)
.++.+.+|.++.... .+..+... .+...+..++|+|+|+ +++++. ++.|.+|++..+...
T Consensus 14 ~~~~i~v~~~d~~tg--~~~~~~~~--~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~------------ 76 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAK--TLTNDGLL--AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH------------ 76 (347)
T ss_dssp SCCEEEEEEEETTTT--EEEEEEEE--EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE------------
T ss_pred CCCCEEEEEEcCCCC--eEEEeeee--eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE------------
Confidence 456788888875321 22221111 2446677899999999 665554 589999987532110
Q ss_pred ccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcC-CCc--eeeeecC---------CCCCeeE
Q 001295 791 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMM-TFK--TMATFMP---------PPPAATF 856 (1106)
Q Consensus 791 ~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~-~~~--~~~~~~~---------~~~~v~~ 856 (1106)
.+.. +. .+...+..++|+|||++|++++ ++.|.+|++. ++. .+..+.. +...+.+
T Consensus 77 --------~~~~-~~--~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~ 145 (347)
T 3hfq_A 77 --------KLNT-VV--APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHY 145 (347)
T ss_dssp --------EEEE-EE--EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEE
T ss_pred --------Eeee-ee--cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceE
Confidence 0100 00 1456678999999999888887 6899999996 332 2333321 1234889
Q ss_pred EEEecCCCceEEEeeCCCcEEEEEee-cceEE--EEecCc-ccCeeEEEEecCCCEEEE-EcCCCcEEEEeCCC--cccc
Q 001295 857 LAFHPQDNNIIAIGMDDSSIQIYNVR-VDEVK--SKLKGH-SKRITGLAFSHALNVLVS-SGADSQLCVWSSDG--WEKQ 929 (1106)
Q Consensus 857 l~~s~~d~~~la~g~~dg~v~iwd~~-~~~~~--~~l~~h-~~~V~~l~~s~d~~~l~s-~s~Dg~i~vwd~~~--~~~~ 929 (1106)
++|+| +++++++...++.|++|++. ++++. ..+..+ ...+..++|+|||++|++ ...++.|.+|+++. ++..
T Consensus 146 ~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~ 224 (347)
T 3hfq_A 146 TDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFT 224 (347)
T ss_dssp EEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred EEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceE
Confidence 99999 77777777778999999998 55433 222222 336788999999996655 56788999999874 3321
Q ss_pred cceeecccCCCCCCCCCCceEEEcCCCcEEEE-E-eCCeEEEEecCC---ceEeeecccCCCCCCeeEEEECCCCCEEEE
Q 001295 930 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQLAIFETTK---LECVKQWVPRESSAPITHATFSCDSQLVYA 1004 (1106)
Q Consensus 930 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~-~d~~v~i~d~~~---~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t 1004 (1106)
....+............+..++|+|||++|++ . .++.|.+|++.. .+.+..+. .+...+..++|+|||++|++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~spdg~~l~v 302 (347)
T 3hfq_A 225 QLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS--TEGDFPRDFDLDPTEAFVVV 302 (347)
T ss_dssp EEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE--CSSSCCCEEEECTTSSEEEE
T ss_pred EeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe--cCCCCcCeEEECCCCCEEEE
Confidence 11122222111111134678999999998866 3 578999999973 24444443 44567899999999999888
Q ss_pred EEcC-CeEEEE--EcCCceeE
Q 001295 1005 CFLD-ATVCVF--SAANLKLR 1022 (1106)
Q Consensus 1005 ~s~D-g~i~vw--d~~~~~~~ 1022 (1106)
++.+ +.|.+| |..+|++.
T Consensus 303 ~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 303 VNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EETTTTEEEEEEECTTTCCEE
T ss_pred EEcCCCcEEEEEEeCCCCeEE
Confidence 8765 899999 55667665
No 151
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=2.9e-19 Score=220.56 Aligned_cols=286 Identities=10% Similarity=0.042 Sum_probs=190.2
Q ss_pred ceEEEEEcCCCceEEEeec---------CceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeE
Q 001295 745 KISRLIFTNSGNAILALAS---------NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 815 (1106)
Q Consensus 745 ~i~~~~~s~~~~~l~~~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~ 815 (1106)
.+.+++|||||++|+.++. ++.+++||+.+ +..+.. .. ....+..
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~----------------------g~~~~~--~~--l~~~~~~ 114 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN----------------------GEFVRG--NE--LPRPIQY 114 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT----------------------TEECCS--SC--CCSSBCC
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC----------------------Cccccc--ee--cCccccc
Confidence 3678999999999998876 67888887653 322100 00 1245788
Q ss_pred EEEecCCCEEEEEeCCeEEEEEcCCCceeeee-cCCCCCe-----------------eEEEEecCCCceEEEeeCCC---
Q 001295 816 FALSKNDSYVMSASGGKISLFNMMTFKTMATF-MPPPPAA-----------------TFLAFHPQDNNIIAIGMDDS--- 874 (1106)
Q Consensus 816 l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~-~~~~~~v-----------------~~l~~s~~d~~~la~g~~dg--- 874 (1106)
++|||||+.|+++.++.|++|++.+++..+.. .++...| .+++||| ||++||+++.|.
T Consensus 115 ~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~ 193 (719)
T 1z68_A 115 LCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDI 193 (719)
T ss_dssp EEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTS
T ss_pred ceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCC
Confidence 99999999999999999999999887765433 2222222 5899999 999999887652
Q ss_pred -------------------------------cEEEEEeecceEE--------EEecCcccCeeEEEEecCCCEEEEEcCC
Q 001295 875 -------------------------------SIQIYNVRVDEVK--------SKLKGHSKRITGLAFSHALNVLVSSGAD 915 (1106)
Q Consensus 875 -------------------------------~v~iwd~~~~~~~--------~~l~~h~~~V~~l~~s~d~~~l~s~s~D 915 (1106)
.|++||+.+++.. ..+.+|...+.+++||||++++++....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~ 273 (719)
T 1z68_A 194 PVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKR 273 (719)
T ss_dssp CEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEES
T ss_pred ceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEecc
Confidence 7889999887643 2245688899999999998877775433
Q ss_pred ----CcEEEEe----CCCcccccceeec-ccCCCCCCCCCCc-----eEEEcCCCcEEEE--E-eCC--eEEEEecCCce
Q 001295 916 ----SQLCVWS----SDGWEKQKNRFLQ-IPTGRTPTAQSDT-----RVQFHQDQIHFLV--V-HET--QLAIFETTKLE 976 (1106)
Q Consensus 916 ----g~i~vwd----~~~~~~~~~~~~~-~~~~~~~~~~~i~-----~~~~s~dg~~l~~--~-~d~--~v~i~d~~~~~ 976 (1106)
..|.+|| +.+++.... +. ...++. ..+. .++|+|||+.++. + .++ .|.+||+.+++
T Consensus 274 ~~~~~~l~~~d~~~~~~~g~~~~~--~~~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 274 VQNVSVLSICDFREDWQTWDCPKT--QEHIEESRT---GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp STTEEEEEEEEECSSSSSEECCGG--GEEEEECSS---SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred ccCeEEEEEEcccCCCCCCceEEE--EecccccCC---ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence 2488899 777553221 10 001222 2333 7899999997655 3 333 68888888776
Q ss_pred EeeecccCCCCCCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCC--cee-EEeeCCCcccCCCCCCCCccceEEEEe
Q 001295 977 CVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAAN--LKL-RCRINPSAYLPAGVSSSNVHPLVIAAH 1048 (1106)
Q Consensus 977 ~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D-----g~i~vwd~~~--~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~ 1048 (1106)
. ..+. .+...+..+.++ |++.|+..+.+ +.+++|.+.. +.. ...+.. .+. +| ...+. .+.|+
T Consensus 349 ~-~~lt--~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~--~~~-~~-~~~~~--~~~~s 418 (719)
T 1z68_A 349 A-IQIT--SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTC--HLR-KE-RCQYY--TASFS 418 (719)
T ss_dssp C-EECS--CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESST--TTT-TT-TBCBE--EEEEC
T ss_pred e-Eecc--cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccC--ccC-CC-CCceE--EEEEC
Confidence 3 3333 445668888888 88887776655 8889998764 421 222220 011 11 11233 68899
Q ss_pred CCCCCEEE-EEeCC--CcEEEEeecCCC
Q 001295 1049 PQEPNEFA-LGLSD--GGVHVFEPLESE 1073 (1106)
Q Consensus 1049 ~~d~~~l~-t~~~D--g~v~vW~~~~~~ 1073 (1106)
| |+++++ +++.+ ..+.+|++.+++
T Consensus 419 ~-dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 419 D-YAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp G-GGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred C-CCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 9 566655 44444 468899987776
No 152
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=3.1e-19 Score=193.93 Aligned_cols=243 Identities=15% Similarity=0.114 Sum_probs=171.5
Q ss_pred CcceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCC-cceeEEeeeeeeccCcCCccccccccCCC-CcCeEE
Q 001295 340 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS-RERLVLRNFKVWDLGACSMPLQAALVKDP-GVSVNR 417 (1106)
Q Consensus 340 ~~~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~h-~~~V~~ 417 (1106)
..+......|...|.+++|+|+|++ |++++ ++.|.+||+.+ ++... +..+| ...|.+
T Consensus 31 ~~~~~~~~~~~~~v~~~~~spdg~~-l~~~~-~~~i~~~d~~~~~~~~~-------------------~~~~~~~~~~~~ 89 (297)
T 2ojh_A 31 TRKMRVVWQTPELFEAPNWSPDGKY-LLLNS-EGLLYRLSLAGDPSPEK-------------------VDTGFATICNND 89 (297)
T ss_dssp TTEEEEEEEESSCCEEEEECTTSSE-EEEEE-TTEEEEEESSSCCSCEE-------------------CCCTTCCCBCSC
T ss_pred CCceeeeccCCcceEeeEECCCCCE-EEEEc-CCeEEEEeCCCCCCceE-------------------eccccccccccc
Confidence 3345556668999999999999996 66665 78999999998 76543 13344 468899
Q ss_pred EEEccCCCEEEEEe--CCCeEEEEEc--cCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCC-CCc
Q 001295 418 VIWSPDGSLFGVAY--SRHIVQIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGA 492 (1106)
Q Consensus 418 l~~spdg~~las~~--~d~~v~iwd~--~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~ 492 (1106)
++|+|||++|++++ .++.+.||.+ .+++. . .+..+ ..+..++|+||++. ++++++.++.++||++. .+.
T Consensus 90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~---~~~~~-~~~~~~~~spdg~~-l~~~~~~~~~~~l~~~~~~~~ 163 (297)
T 2ojh_A 90 HGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-R---LMTKN-LPSYWHGWSPDGKS-FTYCGIRDQVFDIYSMDIDSG 163 (297)
T ss_dssp CEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-E---ECCSS-SSEEEEEECTTSSE-EEEEEEETTEEEEEEEETTTC
T ss_pred eEECCCCCEEEEEEeCCCCcceEEEEECCCCce-E---EeecC-CCccceEECCCCCE-EEEEECCCCceEEEEEECCCC
Confidence 99999999999998 3345555554 45442 2 24333 34899999999994 34478889999999864 233
Q ss_pred eeEEEeccCCCeEEEeccccCCceEEEEEe-cCCeEEEEeCC-CCCceeEeeCCCCeeEEEEEecCCCeEEEeeecccee
Q 001295 493 KQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLYD-NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 570 (1106)
Q Consensus 493 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~ 570 (1106)
....+..|...+.+++|+++ +..|+.++ .++.+++|+++ .......+..+...+..++|+|++
T Consensus 164 ~~~~~~~~~~~~~~~~~s~d--g~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg------------- 228 (297)
T 2ojh_A 164 VETRLTHGEGRNDGPDYSPD--GRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSG------------- 228 (297)
T ss_dssp CEEECCCSSSCEEEEEECTT--SSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTS-------------
T ss_pred cceEcccCCCccccceECCC--CCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCC-------------
Confidence 45667778889999998654 46666555 59999999886 334444444444445555555554
Q ss_pred EEEEcCCCCEEEEEECC-----------CeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCC
Q 001295 571 VVQFDTTKNRFLAAGDD-----------FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 632 (1106)
Q Consensus 571 ~~~~~~~~~~l~~~~~d-----------~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 632 (1106)
++|++++.+ +.|++||+.+++.........+...+.+++|+|++++|++++.+.
T Consensus 229 --------~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 229 --------DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp --------SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred --------CEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 467776654 679999999887644443222234688999999999998887653
No 153
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.83 E-value=1.7e-18 Score=197.35 Aligned_cols=259 Identities=13% Similarity=0.079 Sum_probs=171.5
Q ss_pred CCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE-
Q 001295 350 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG- 428 (1106)
Q Consensus 350 ~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la- 428 (1106)
...++.+++++++.+ +++|+.++ |+||+......... ...+.. ............|...|.+++|+|+|++||
T Consensus 36 ~~~~n~lavs~~~~~-l~~~~~dg-v~v~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~v~~l~~spdg~~lav 109 (434)
T 2oit_A 36 KERSSLLAVSNKYGL-VFAGGASG-LQIFPTKNLLIQNK---PGDDPN-KIVDKVQGLLVPMKFPIHHLALSCDNLTLSA 109 (434)
T ss_dssp CSCCBCEEEETTTTE-EEEEETTE-EEEEEHHHHCCCCC---TTCCTT-CEEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred CCCccEEEEecCCCE-EEEECCCE-EEEEEchHhhhhcc---cccCcc-cccccCccccccCCCcccEEEEcCCCCEEEE
Confidence 456899999999994 88888777 89988643211000 000000 000000001134567899999999999999
Q ss_pred ---EEeCCCeEEEEEccCC--------ceeeeeeeeccccCCeeEEEEcCC-CCceEEEEecCCCcEEEEeCCCCceeEE
Q 001295 429 ---VAYSRHIVQIYSYHGG--------DEVRQHLEIDAHVGGVNDIAFSHP-NKQLCVITCGDDKTIKVWDATNGAKQYI 496 (1106)
Q Consensus 429 ---s~~~d~~v~iwd~~~~--------~~~~~~~~l~~h~~~V~~~~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 496 (1106)
+|+.|++|+|||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.||+|++||++++..+..
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence 7888999999999865 223334567789999999999998 55 899999999999999999988777
Q ss_pred EeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCC-------CeeEEEEEecCCCeEEEeeeccce
Q 001295 497 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG-------RWCTTMAYSADGTRTYQGFRKRSL 569 (1106)
Q Consensus 497 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~~v~~~~~s~~~~~~~~~~~~~~i 569 (1106)
..+|...|.+++|+++ |++|++|+.||.|++||++ ......+..+. ..+.+++|++++.
T Consensus 188 ~~~~~~~v~~v~wspd--g~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~----------- 253 (434)
T 2oit_A 188 TLPSTVAVTSVCWSPK--GKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYV----------- 253 (434)
T ss_dssp EECGGGCEEEEEECTT--SSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTE-----------
T ss_pred ccCCCCceeEEEEcCC--CCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCce-----------
Confidence 8889999999999765 5799999999999999998 44444333322 1455556555443
Q ss_pred eEEEEcCCCCEEEE-EECCC------eEEEEECCCcc-----eeEEEccC-----CCCCCcCeEEEccCCCEEEEEeC-C
Q 001295 570 GVVQFDTTKNRFLA-AGDDF------SIKFWDMDSVQ-----LLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTN-D 631 (1106)
Q Consensus 570 ~~~~~~~~~~~l~~-~~~d~------~i~iwd~~~~~-----~~~~~~~~-----~~~~~v~~v~~s~~~~~l~~~~~-d 631 (1106)
++++ ...+| .+++|++...+ ....+... ........+.+-++.+++++++. .
T Consensus 254 ----------~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s 323 (434)
T 2oit_A 254 ----------FAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAAS 323 (434)
T ss_dssp ----------EEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTC
T ss_pred ----------EEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCC
Confidence 4444 33343 38999997642 11222111 11111122333367677666654 4
Q ss_pred CcEEEEEcc
Q 001295 632 NGIKILATS 640 (1106)
Q Consensus 632 g~i~iwd~~ 640 (1106)
+.|.++...
T Consensus 324 ~dv~vl~~~ 332 (434)
T 2oit_A 324 TEVSILARQ 332 (434)
T ss_dssp SBCEEEEEC
T ss_pred CceeEEEec
Confidence 557777643
No 154
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.83 E-value=3.6e-19 Score=219.82 Aligned_cols=334 Identities=11% Similarity=0.064 Sum_probs=218.6
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCC-CCCcCeEEEccCCCEEEEEeC---------CCcEEEEEccC
Q 001295 572 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-LPASPRIRFNKDGCLLAVSTN---------DNGIKILATSD 641 (1106)
Q Consensus 572 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~s~~~~~l~~~~~---------dg~i~iwd~~~ 641 (1106)
+.|+|++. ++..+.|+.|++||+.+++....+..+.. ...+.+++|||||++|++++. ++.|++||+.+
T Consensus 21 ~~~s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~ 99 (719)
T 1z68_A 21 PNWISGQE-YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN 99 (719)
T ss_dssp CEESSSSE-EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred cEECCCCe-EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence 45666663 55555799999999999998777754321 013789999999999999876 67888888876
Q ss_pred CchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeE
Q 001295 642 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 721 (1106)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw 721 (1106)
+. .+..
T Consensus 100 g~-~~~~------------------------------------------------------------------------- 105 (719)
T 1z68_A 100 GE-FVRG------------------------------------------------------------------------- 105 (719)
T ss_dssp TE-ECCS-------------------------------------------------------------------------
T ss_pred Cc-cccc-------------------------------------------------------------------------
Confidence 62 1000
Q ss_pred ecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccc
Q 001295 722 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 801 (1106)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 801 (1106)
.. -...+..++|||||+.|+.+. ++.|++|++.++.... +-. .+....
T Consensus 106 -----------~~-------l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~-----------l~~--~~~~~~ 153 (719)
T 1z68_A 106 -----------NE-------LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQ-----------ITF--NGRENK 153 (719)
T ss_dssp -----------SC-------CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEE-----------CCC--CCBTTT
T ss_pred -----------ee-------cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEE-----------Eec--CCCcCC
Confidence 00 012356789999999888875 7799998875422100 000 000000
Q ss_pred cccCCCCCC---------CCeeEEEEecCCCEEEEEe-CC----------------------------------eEEEEE
Q 001295 802 NDVTDSNPE---------EAVPCFALSKNDSYVMSAS-GG----------------------------------KISLFN 837 (1106)
Q Consensus 802 ~~~~~~~~~---------~~v~~l~~s~~~~~l~~~s-dg----------------------------------~i~vwd 837 (1106)
.+.+ +. ....+++|||||++|++++ |. .|++||
T Consensus 154 -v~~g--~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d 230 (719)
T 1z68_A 154 -IFNG--IPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIID 230 (719)
T ss_dssp -EEES--SCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEE
T ss_pred -eEcc--cccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEE
Confidence 0000 11 1225899999999999887 42 788999
Q ss_pred cCCCcee--------eeecCCCCCeeEEEEecCCCceEEEeeCCC----cEEEEE----eecceEEEEe----cCcccCe
Q 001295 838 MMTFKTM--------ATFMPPPPAATFLAFHPQDNNIIAIGMDDS----SIQIYN----VRVDEVKSKL----KGHSKRI 897 (1106)
Q Consensus 838 ~~~~~~~--------~~~~~~~~~v~~l~~s~~d~~~la~g~~dg----~v~iwd----~~~~~~~~~l----~~h~~~V 897 (1106)
+.+++.. ..+.+|...+..++||| |++++++....+ .|++|| +.++++...+ .+|...+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~ 309 (719)
T 1z68_A 231 TTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWA 309 (719)
T ss_dssp SSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCS
T ss_pred CCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceE
Confidence 9987653 22346777899999999 688877754332 488899 7788776655 4677777
Q ss_pred e-----EEEEecCCCEEEE--EcCCC--cEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeC---
Q 001295 898 T-----GLAFSHALNVLVS--SGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE--- 964 (1106)
Q Consensus 898 ~-----~l~~s~d~~~l~s--~s~Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d--- 964 (1106)
. .++|+|||+.|+. ...+| .|.+|++.+++. ..+ ..+ . ..+..+.++ +++.|+. +.+
T Consensus 310 ~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~---~~l--t~~-~---~~v~~~~~~-d~~~i~~~~~~~~~ 379 (719)
T 1z68_A 310 GGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA---IQI--TSG-K---WEAINIFRV-TQDSLFYSSNEFEE 379 (719)
T ss_dssp SSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC---EEC--SCS-S---SCEEEEEEE-CSSEEEEEESCGGG
T ss_pred ccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce---Eec--ccC-c---eEEEEEEEE-eCCEEEEEEecCCC
Confidence 7 8999999996554 44555 466677766431 111 111 1 245667777 8887777 444
Q ss_pred --CeEEEEecCC--ce-Eeeecc--cCCCCCCeeEEEECCCCCEEEEE-EcC--CeEEEEEcCCceeEEeeC
Q 001295 965 --TQLAIFETTK--LE-CVKQWV--PRESSAPITHATFSCDSQLVYAC-FLD--ATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus 965 --~~v~i~d~~~--~~-~~~~~~--~~~h~~~v~~l~~s~d~~~l~t~-s~D--g~i~vwd~~~~~~~~~~~ 1026 (1106)
+..++|.+.. +. ....+. ..+|...+..+.|+||+++++.. +.+ ..+++||+.+++.+..+.
T Consensus 380 ~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 380 YPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp CTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred CCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 6788887653 32 112222 12356788899999999987754 333 468999999888665544
No 155
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=1e-18 Score=194.96 Aligned_cols=237 Identities=13% Similarity=0.089 Sum_probs=180.2
Q ss_pred EEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCC-CCeeEEEEecCCCce-EEEeeCCCcEEEEEeecceEEEEec
Q 001295 815 CFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNI-IAIGMDDSSIQIYNVRVDEVKSKLK 891 (1106)
Q Consensus 815 ~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-~~v~~l~~s~~d~~~-la~g~~dg~v~iwd~~~~~~~~~l~ 891 (1106)
.++++++++++++++ +++|++||..+++.+..+..+. ..+..++|+| ++++ ++++..++.|++||+.+++.+..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 346777888888887 8999999999998888776443 2578999999 7765 4556678999999999998887776
Q ss_pred Cc------ccCeeEEEEecCCCEEEEEcCC------------CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEc
Q 001295 892 GH------SKRITGLAFSHALNVLVSSGAD------------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 953 (1106)
Q Consensus 892 ~h------~~~V~~l~~s~d~~~l~s~s~D------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 953 (1106)
.+ ...+.+++|+|||++|++++.+ +.|.+||+.+++.... +...... ..+.+++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~----~~~~~~~~s 156 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP--VRTFPMP----RQVYLMRAA 156 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC--SEEEECC----SSCCCEEEC
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccce--eeeccCC----CcccceeEC
Confidence 33 2347899999999999998865 8999999988553221 1111111 257889999
Q ss_pred CCCcEEEEEeCCeEEEEecCCceEeeecccCC------------------------------------------------
Q 001295 954 QDQIHFLVVHETQLAIFETTKLECVKQWVPRE------------------------------------------------ 985 (1106)
Q Consensus 954 ~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~------------------------------------------------ 985 (1106)
|||+ ++++ ++.|.+||+.+++.+..+....
T Consensus 157 ~dg~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 157 DDGS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp TTSC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred CCCc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 9999 5543 3449999999988776654321
Q ss_pred ------------------CCCCeeEEEECC-CCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEE
Q 001295 986 ------------------SSAPITHATFSC-DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1046 (1106)
Q Consensus 986 ------------------h~~~v~~l~~s~-d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1046 (1106)
+...+.+++|+| |+++|+++ ++.|++||+.+++.+..+. .... +. .++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~----~~~~-----~~--~~~ 301 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN----LDHT-----YY--CVA 301 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE----CSSC-----CC--EEE
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc----CCCC-----cc--ceE
Confidence 011456778889 99999888 8899999999999887765 1111 33 799
Q ss_pred EeCCCCCEEEEEeCCCcEEEEeecCCCC
Q 001295 1047 AHPQEPNEFALGLSDGGVHVFEPLESEG 1074 (1106)
Q Consensus 1047 ~~~~d~~~l~t~~~Dg~v~vW~~~~~~~ 1074 (1106)
|+| |+++|++++.++.|.+||+.+++.
T Consensus 302 ~s~-dg~~l~~~~~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 302 FDK-KGDKLYLGGTFNDLAVFNPDTLEK 328 (349)
T ss_dssp ECS-SSSCEEEESBSSEEEEEETTTTEE
T ss_pred ECC-CCCEEEEecCCCeEEEEeccccce
Confidence 999 678888888899999999998873
No 156
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.82 E-value=7.8e-18 Score=207.43 Aligned_cols=233 Identities=14% Similarity=0.104 Sum_probs=157.2
Q ss_pred CCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCc-----CeEEEEEccCCC
Q 001295 351 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV-----SVNRVIWSPDGS 425 (1106)
Q Consensus 351 ~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~-----~V~~l~~spdg~ 425 (1106)
.....++|+|||++ ++++ ||+|++||+.+++.... +.+|.. ....++|||||+
T Consensus 17 ~~~~~~~w~~dg~~-~~~~--~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~Spdg~ 74 (740)
T 4a5s_A 17 LKLYSLRWISDHEY-LYKQ--ENNILVFNAEYGNSSVF-------------------LENSTFDEFGHSINDYSISPDGQ 74 (740)
T ss_dssp CCCCCEEECSSSEE-EEEE--TTEEEEEETTTCCEEEE-------------------ECTTTTTTCCSCCCEEEECTTSS
T ss_pred ccccccEECCCCcE-EEEc--CCcEEEEECCCCceEEE-------------------EechhhhhhcccccceEECCCCC
Confidence 34668999999984 7775 89999999999986542 333332 334589999999
Q ss_pred EEEEEeCC---------CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEE
Q 001295 426 LFGVAYSR---------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 496 (1106)
Q Consensus 426 ~las~~~d---------~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 496 (1106)
+|++++.+ +.+.+||+.+++... +..|.+.+...+|||||+ .|+.+ .|+.|++||+.+++..+.
T Consensus 75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----l~~~~~~~~~~~~SPdG~--~la~~-~~~~i~~~~~~~~~~~~l 147 (740)
T 4a5s_A 75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----EERIPNNTQWVTWSPVGH--KLAYV-WNNDIYVKIEPNLPSYRI 147 (740)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEETTTTEECC----SSCCCTTEEEEEECSSTT--CEEEE-ETTEEEEESSTTSCCEEC
T ss_pred EEEEEECCeeeEEEccceEEEEEECCCCcEEE----cccCCCcceeeEECCCCC--EEEEE-ECCeEEEEECCCCceEEE
Confidence 99999876 566799999987543 667888999999999999 46665 468999999988875542
Q ss_pred -EeccCCCe-----------------EEEeccccCCceEEEEEecCC-eEEEEeCCCCCceeEeeCCCCeeEEEEEecCC
Q 001295 497 -FEGHEAPV-----------------YSVCPHHKENIQFIFSTALDG-KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 557 (1106)
Q Consensus 497 -~~~h~~~v-----------------~~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 557 (1106)
..++...+ ..+.|+ +||+.|+.++.|. .+.+|++....... .+...+..+.+.+.|
T Consensus 148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wS--pDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G 222 (740)
T 4a5s_A 148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWWS--PNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAG 222 (740)
T ss_dssp CSCCBTTTEEESBCCHHHHHHTSSSSBCEEEC--TTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTT
T ss_pred cCCCCccceecCcccccccchhcCCCcceEEC--CCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCc
Confidence 22333322 236665 5567888877654 48888654221110 122334455555554
Q ss_pred CeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCC---cc--eeEEEccC----CCCCCcCeEEEccCCCEEEEE
Q 001295 558 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS---VQ--LLTSIDAD----GGLPASPRIRFNKDGCLLAVS 628 (1106)
Q Consensus 558 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~---~~--~~~~~~~~----~~~~~v~~v~~s~~~~~l~~~ 628 (1106)
. . .....|++||+.+ ++ ....+... ++...+..++|+|||+.++..
T Consensus 223 ~---------------------~----~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~ 277 (740)
T 4a5s_A 223 A---------------------V----NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQW 277 (740)
T ss_dssp S---------------------C----CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred C---------------------c----CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEE
Confidence 3 1 1123789999998 73 22233221 123467889999999977765
Q ss_pred eC----CCcEEEEEccCC
Q 001295 629 TN----DNGIKILATSDG 642 (1106)
Q Consensus 629 ~~----dg~i~iwd~~~~ 642 (1106)
.. +..|++||+.++
T Consensus 278 ~~r~~~~~~i~~~d~~tg 295 (740)
T 4a5s_A 278 LRRIQNYSVMDICDYDES 295 (740)
T ss_dssp EESSTTEEEEEEEEEETT
T ss_pred eCCCCCEEEEEEEECCCC
Confidence 43 236899998877
No 157
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.81 E-value=2e-18 Score=207.08 Aligned_cols=234 Identities=10% Similarity=0.043 Sum_probs=168.4
Q ss_pred CCCCcEEEEEecCCCeEEEEEec-cCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCC-cCeEEEEEccCCCE
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTN-VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIWSPDGSL 426 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~-dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~ 426 (1106)
+..+|++++|||||++ ||+++. ||++.||++.+++... +..|. ..|..++|||| ++
T Consensus 20 ~~~~~~~~~~~~DG~~-la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~ 77 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDK-LLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RV 77 (582)
T ss_dssp HHSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EE
T ss_pred hccchheeecCCCCCe-EEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eE
Confidence 3567999999999997 666555 9999999997665433 34444 68999999999 77
Q ss_pred EEEEeC---CCeEEEEEccC--CceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccC
Q 001295 427 FGVAYS---RHIVQIYSYHG--GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 501 (1106)
Q Consensus 427 las~~~---d~~v~iwd~~~--~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 501 (1106)
+++++. +....||.+.. ...... +..+ ..+...+|+||++.+++++++.++.+ +||+.+++.......+.
T Consensus 78 l~~~~~~~g~~~~~l~~~~~~~~g~~~~---l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~ 152 (582)
T 3o4h_A 78 ILVRDVSKGAEQHALFKVNTSRPGEEQR---LEAV-KPMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG 152 (582)
T ss_dssp EEEEECSTTSCCEEEEEEETTSTTCCEE---CTTS-CSBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS
T ss_pred EEEeccCCCCcceEEEEEeccCCCcccc---ccCC-CCceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC
Confidence 777765 45566665543 221121 2222 23456789999987566666666555 99999987665554333
Q ss_pred CCeEEEeccccCCceEEEEEecC----CeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCC
Q 001295 502 APVYSVCPHHKENIQFIFSTALD----GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 577 (1106)
Q Consensus 502 ~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~ 577 (1106)
.+++|+| ||++|++++.+ +.|++||+.+++.. .+..+...+..++|+|||+
T Consensus 153 ---~~~~~sp--DG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~------------------- 207 (582)
T 3o4h_A 153 ---FGFVSDI--RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMK------------------- 207 (582)
T ss_dssp ---CEEEEEE--ETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSC-------------------
T ss_pred ---ceEEECC--CCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCC-------------------
Confidence 6777655 55789988777 78999999876543 4555556666666666665
Q ss_pred CCEEEEEECCC--eEEEEECCCcceeEEEccCCCCCCcCeEE--------EccCCCEEEEEeCCCcEEEEEc
Q 001295 578 KNRFLAAGDDF--SIKFWDMDSVQLLTSIDADGGLPASPRIR--------FNKDGCLLAVSTNDNGIKILAT 639 (1106)
Q Consensus 578 ~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~--------~s~~~~~l~~~~~dg~i~iwd~ 639 (1106)
+|+++..++ .|++||+.+++.. .+..+ ...+..++ |+|||.++++++.++.+++|++
T Consensus 208 --~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 208 --VTAGLETAREARLVTVDPRDGSVE-DLELP--SKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp --EEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred --EEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 677777788 8999999998877 55443 33466677 9999999999999999999987
No 158
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.81 E-value=1.5e-18 Score=208.14 Aligned_cols=271 Identities=10% Similarity=0.041 Sum_probs=188.6
Q ss_pred ccCCeeEEEEcCCCCceEEEEecC-CCcEEEEeCCCCceeEEEeccC-CCeEEEeccccCCceEEEEEec---CCeEEEE
Q 001295 456 HVGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHE-APVYSVCPHHKENIQFIFSTAL---DGKIKAW 530 (1106)
Q Consensus 456 h~~~V~~~~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~---dg~i~iw 530 (1106)
+..+|.+++|+|||+ .|++++. |++++||++.+++. ..+..|. ..+..++|+++ +++++++. +...++|
T Consensus 20 ~~~~~~~~~~~~DG~--~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd---~~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGD--KLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG---RVILVRDVSKGAEQHALF 93 (582)
T ss_dssp HHSCEEEEEEEETTT--EEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS---EEEEEEECSTTSCCEEEE
T ss_pred hccchheeecCCCCC--eEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC---eEEEEeccCCCCcceEEE
Confidence 356899999999999 6777766 99999999866654 4455555 68999998754 67777765 5556676
Q ss_pred eCCC--CCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCC
Q 001295 531 LYDN--LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG 608 (1106)
Q Consensus 531 d~~~--~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 608 (1106)
.++. ......+... ......+|+|+|+. .+++.+.++.+.+||+.+++.......+.
T Consensus 94 ~~~~~~~g~~~~l~~~-~~~~~~~~s~dg~~--------------------~~~~s~~~~~~~l~d~~~g~~~~l~~~~~ 152 (582)
T 3o4h_A 94 KVNTSRPGEEQRLEAV-KPMRILSGVDTGEA--------------------VVFTGATEDRVALYALDGGGLRELARLPG 152 (582)
T ss_dssp EEETTSTTCCEECTTS-CSBEEEEEEECSSC--------------------EEEEEECSSCEEEEEEETTEEEEEEEESS
T ss_pred EEeccCCCccccccCC-CCceeeeeCCCCCe--------------------EEEEecCCCCceEEEccCCcEEEeecCCC
Confidence 5543 3332222222 22334566666642 23344444555599999987766554331
Q ss_pred CCCCcCeEEEccCCCEEEEEeCC----CcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccc
Q 001295 609 GLPASPRIRFNKDGCLLAVSTND----NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA 684 (1106)
Q Consensus 609 ~~~~v~~v~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1106)
.+++|+|||++|++++.+ +.|++||+.++. .. .
T Consensus 153 -----~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~-~~-~------------------------------------ 189 (582)
T 3o4h_A 153 -----FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-LR-V------------------------------------ 189 (582)
T ss_dssp -----CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC-CE-E------------------------------------
T ss_pred -----ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-ce-E------------------------------------
Confidence 789999999999988766 567777765541 00 0
Q ss_pred cccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecC
Q 001295 685 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN 764 (1106)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 764 (1106)
T Consensus 190 -------------------------------------------------------------------------------- 189 (582)
T 3o4h_A 190 -------------------------------------------------------------------------------- 189 (582)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CC--eEEEEEcCCC
Q 001295 765 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GG--KISLFNMMTF 841 (1106)
Q Consensus 765 g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg--~i~vwd~~~~ 841 (1106)
+. .+...+..++|||||++|+++. ++ .|++||+.++
T Consensus 190 ---------------------------------------l~--~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~ 228 (582)
T 3o4h_A 190 ---------------------------------------FD--SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG 228 (582)
T ss_dssp ---------------------------------------EC--CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC
T ss_pred ---------------------------------------ee--cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC
Confidence 00 0344456777888888777555 56 7888998888
Q ss_pred ceeeeecCCCCCeeEEE--------EecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEc
Q 001295 842 KTMATFMPPPPAATFLA--------FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG 913 (1106)
Q Consensus 842 ~~~~~~~~~~~~v~~l~--------~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s 913 (1106)
+.. .+..|...+..++ |+| |+.++++++.||.+++|++ ++... .+.+.|.+++|+ |++++++++
T Consensus 229 ~~~-~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s 300 (582)
T 3o4h_A 229 SVE-DLELPSKDFSSYRPTAITWLGYLP-DGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHT 300 (582)
T ss_dssp CEE-ECCCSCSHHHHHCCSEEEEEEECT-TSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEE
T ss_pred cEE-EccCCCcChhhhhhccccceeEcC-CCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEc
Confidence 776 6677777777777 999 7799999999999999999 76654 344678999999 999999988
Q ss_pred CCCc---EEEEeCCC
Q 001295 914 ADSQ---LCVWSSDG 925 (1106)
Q Consensus 914 ~Dg~---i~vwd~~~ 925 (1106)
.+.+ +.+|+..+
T Consensus 301 ~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 301 SLSTPPRIVSLPSGE 315 (582)
T ss_dssp ETTEEEEEEEETTCC
T ss_pred CCCCCCeEEEEcCCC
Confidence 8754 66666553
No 159
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.80 E-value=8.5e-17 Score=198.16 Aligned_cols=328 Identities=10% Similarity=0.026 Sum_probs=210.7
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCC-CCc--CeEEEccCCCEEEEEeCC---------CcEEEEE
Q 001295 571 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL-PAS--PRIRFNKDGCLLAVSTND---------NGIKILA 638 (1106)
Q Consensus 571 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~v--~~v~~s~~~~~l~~~~~d---------g~i~iwd 638 (1106)
.+.|+|++.+++++ |+.|++||+.+++....+..+... ..+ ..++|||||++|+.++.+ +.+.+||
T Consensus 21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d 98 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (740)
T ss_dssp CEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEE
Confidence 45566666567775 899999999999988777765421 112 347899999999998876 4455777
Q ss_pred ccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCce
Q 001295 639 TSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKS 718 (1106)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 718 (1106)
+.++. ..+ +
T Consensus 99 ~~~~~-~~~-l--------------------------------------------------------------------- 107 (740)
T 4a5s_A 99 LNKRQ-LIT-E--------------------------------------------------------------------- 107 (740)
T ss_dssp TTTTE-ECC-S---------------------------------------------------------------------
T ss_pred CCCCc-EEE-c---------------------------------------------------------------------
Confidence 66651 100 0
Q ss_pred eeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCC
Q 001295 719 KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI 798 (1106)
Q Consensus 719 ~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 798 (1106)
..+...+...+|||||+.|+.+ .++.|++|++..+.
T Consensus 108 ---------------------~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~---------------------- 143 (740)
T 4a5s_A 108 ---------------------ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLP---------------------- 143 (740)
T ss_dssp ---------------------SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSC----------------------
T ss_pred ---------------------ccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCc----------------------
Confidence 1134568899999999999877 56789998875422
Q ss_pred ccccccCCC------CCC---------CCeeEEEEecCCCEEEEEe-C-C------------------------------
Q 001295 799 MMTNDVTDS------NPE---------EAVPCFALSKNDSYVMSAS-G-G------------------------------ 831 (1106)
Q Consensus 799 ~~~~~~~~~------~~~---------~~v~~l~~s~~~~~l~~~s-d-g------------------------------ 831 (1106)
.......+. ++. .....+.|||||++||.++ | +
T Consensus 144 ~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~ 223 (740)
T 4a5s_A 144 SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGA 223 (740)
T ss_dssp CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTS
T ss_pred eEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcC
Confidence 111000000 011 2234589999999999875 2 2
Q ss_pred -----eEEEEEcCC---Cc--eeeeec------CCCCCeeEEEEecCCCceEEEeeC----CCcEEEEEeecce----EE
Q 001295 832 -----KISLFNMMT---FK--TMATFM------PPPPAATFLAFHPQDNNIIAIGMD----DSSIQIYNVRVDE----VK 887 (1106)
Q Consensus 832 -----~i~vwd~~~---~~--~~~~~~------~~~~~v~~l~~s~~d~~~la~g~~----dg~v~iwd~~~~~----~~ 887 (1106)
+|++||+.+ ++ ....+. ++...+..++||| |+++++.... +..|++||+.+++ +.
T Consensus 224 ~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~ 302 (740)
T 4a5s_A 224 VNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCL 302 (740)
T ss_dssp CCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEEC
T ss_pred cCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCcccccee
Confidence 478899988 73 222333 3677799999999 8886665533 3479999999987 32
Q ss_pred --EEe--cCcccCee-----EEEEecCCCEEE-EEcC-C--CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcC
Q 001295 888 --SKL--KGHSKRIT-----GLAFSHALNVLV-SSGA-D--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 954 (1106)
Q Consensus 888 --~~l--~~h~~~V~-----~l~~s~d~~~l~-s~s~-D--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 954 (1106)
..+ .+|...|. .++|+|||+.|+ ..+. + ..|.+|++.+++. ..+..+. ..+..+. .+
T Consensus 303 ~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~-----~~lT~g~----~~v~~~~-~~ 372 (740)
T 4a5s_A 303 VARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC-----TFITKGT----WEVIGIE-AL 372 (740)
T ss_dssp GGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC-----EESCCSS----SCEEEEE-EE
T ss_pred EEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce-----EecccCC----EEEEEEE-EE
Confidence 222 45665554 789999999887 6653 3 4588888877543 2222232 1334433 35
Q ss_pred CCcEEEE-EeC-------CeEEEEecCCceEeeecccC--CCCCCeeEEEECCCCCEEEEEEcC---CeEEEEEcCCcee
Q 001295 955 DQIHFLV-VHE-------TQLAIFETTKLECVKQWVPR--ESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKL 1021 (1106)
Q Consensus 955 dg~~l~~-~~d-------~~v~i~d~~~~~~~~~~~~~--~h~~~v~~l~~s~d~~~l~t~s~D---g~i~vwd~~~~~~ 1021 (1106)
|++.|+. +.. ..|...++.++.....+... +....+..+.||||+++++..... ..+.+++..+++.
T Consensus 373 d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~ 452 (740)
T 4a5s_A 373 TSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKG 452 (740)
T ss_dssp CSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEE
T ss_pred eCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcE
Confidence 5776666 433 25666666655443233321 234678899999999987765543 3688899888876
Q ss_pred EEeeC
Q 001295 1022 RCRIN 1026 (1106)
Q Consensus 1022 ~~~~~ 1026 (1106)
+..+.
T Consensus 453 ~~~l~ 457 (740)
T 4a5s_A 453 LRVLE 457 (740)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 65543
No 160
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.80 E-value=4.6e-17 Score=182.36 Aligned_cols=275 Identities=11% Similarity=0.106 Sum_probs=181.3
Q ss_pred cCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecC----ceEEEeeccccccCCCCccccccC
Q 001295 713 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN----AIHLLWKWQRTERNSSGKATASVA 788 (1106)
Q Consensus 713 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~~~~~ 788 (1106)
+.++.|.+|.++..... ...+.. . +......++|+|++++|++++.+ +.+.+|++...
T Consensus 24 ~~~~~i~~~~~d~~~g~--~~~~~~--~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~------------- 85 (361)
T 3scy_A 24 GNSKGIYTFRFNEETGE--SLPLSD--A-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKE------------- 85 (361)
T ss_dssp SSCCEEEEEEEETTTCC--EEEEEE--E-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETT-------------
T ss_pred CCCCCEEEEEEeCCCCC--EEEeec--c-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCC-------------
Confidence 34678999988643221 111111 1 44566779999999999888875 79999987531
Q ss_pred ccccCCCCCCcccc-ccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCCceeeee------cC--------CC
Q 001295 789 PQLWQPPSGIMMTN-DVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATF------MP--------PP 851 (1106)
Q Consensus 789 ~~~w~~~~~~~~~~-~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~------~~--------~~ 851 (1106)
+|.+... ... .+......+++ ++++|++++ ++.|.+|++.....+..+ .+ +.
T Consensus 86 -------~g~~~~~~~~~--~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~ 154 (361)
T 3scy_A 86 -------KGTLHLLNTQK--TMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTM 154 (361)
T ss_dssp -------TTEEEEEEEEE--CSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSS
T ss_pred -------CCcEEEeeEec--cCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCC
Confidence 1211110 011 13445667777 888888876 689999999754333221 11 12
Q ss_pred CCeeEEEEecCCCceEEE-eeCCCcEEEEEeecce-------EE------EEecCcccCeeEEEEecCCCEEEEEc-CCC
Q 001295 852 PAATFLAFHPQDNNIIAI-GMDDSSIQIYNVRVDE-------VK------SKLKGHSKRITGLAFSHALNVLVSSG-ADS 916 (1106)
Q Consensus 852 ~~v~~l~~s~~d~~~la~-g~~dg~v~iwd~~~~~-------~~------~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg 916 (1106)
..+.+++|+| ++++|++ +..++.|++|++.... +. .....+...+.+++|+|||++|++++ .++
T Consensus 155 ~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~ 233 (361)
T 3scy_A 155 PHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGG 233 (361)
T ss_dssp CCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTC
T ss_pred CcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCC
Confidence 3458899999 7875554 4458899999987533 11 11223455678999999999887776 689
Q ss_pred cEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-e--CCeEEEEecC--Cce--EeeecccCCCCCC
Q 001295 917 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H--ETQLAIFETT--KLE--CVKQWVPRESSAP 989 (1106)
Q Consensus 917 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~--d~~v~i~d~~--~~~--~~~~~~~~~h~~~ 989 (1106)
.|.+|++.+++......+.....+. ..+..++|+|||++|+++ . ++.|.+|++. +++ .+..+. . ...
T Consensus 234 ~v~v~~~~~g~~~~~~~~~~~~~~~---~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~--~-g~~ 307 (361)
T 3scy_A 234 TVIAFRYADGMLDEIQTVAADTVNA---QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL--T-GIH 307 (361)
T ss_dssp EEEEEEEETTEEEEEEEEESCSSCC---CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE--C-SSC
T ss_pred eEEEEEecCCceEEeEEEecCCCCC---CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec--C-CCC
Confidence 9999999876432222222222211 245799999999998774 3 4789999995 444 333333 2 457
Q ss_pred eeEEEECCCCCEEEEEE-cCCeEEEEEc--CCceeEE
Q 001295 990 ITHATFSCDSQLVYACF-LDATVCVFSA--ANLKLRC 1023 (1106)
Q Consensus 990 v~~l~~s~d~~~l~t~s-~Dg~i~vwd~--~~~~~~~ 1023 (1106)
+.+++|+|||++|++++ .++.|.+|++ .++++..
T Consensus 308 ~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~ 344 (361)
T 3scy_A 308 PRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTD 344 (361)
T ss_dssp CCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred CceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence 88999999999998887 6789999654 5776654
No 161
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.80 E-value=9.1e-17 Score=179.96 Aligned_cols=230 Identities=12% Similarity=0.113 Sum_probs=146.3
Q ss_pred ceEEEEEcCCCceEEEee-cCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCC
Q 001295 745 KISRLIFTNSGNAILALA-SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 823 (1106)
Q Consensus 745 ~i~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~ 823 (1106)
....+++ +++.++++. .++.+.+|++.......... ..+.....+.... ..+...+.+++|+|+|+
T Consensus 101 ~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~------~~~~~~g~~~~~~-----~~~~~~~~~~~~spdg~ 167 (361)
T 3scy_A 101 DPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPAS------DVIEFKGSGPDKE-----RQTMPHLHCVRITPDGK 167 (361)
T ss_dssp CEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCS------EEEECCCCCSCTT-----TCSSCCEEEEEECTTSS
T ss_pred CcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccc------eeEEccCCCCCcc-----ccCCCcceEEEECCCCC
Confidence 4455666 777776666 47899999986321100000 0000000010000 01344578999999999
Q ss_pred EEEEEe--CCeEEEEEcCCCce------e-------eeecCCCCCeeEEEEecCCCceEEEee-CCCcEEEEEeecceE-
Q 001295 824 YVMSAS--GGKISLFNMMTFKT------M-------ATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDEV- 886 (1106)
Q Consensus 824 ~l~~~s--dg~i~vwd~~~~~~------~-------~~~~~~~~~v~~l~~s~~d~~~la~g~-~dg~v~iwd~~~~~~- 886 (1106)
++++++ ++.|.+|++..... + .....+...+..++|+| |+++|++++ .++.|.+|++.+++.
T Consensus 168 ~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~ 246 (361)
T 3scy_A 168 YLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLD 246 (361)
T ss_dssp EEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEE
T ss_pred EEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceE
Confidence 877766 68999999875431 1 11223455688999999 888777766 689999999997754
Q ss_pred -EEEe---cCcccCeeEEEEecCCCEEEEEcC--CCcEEEEeCC--CcccccceeecccCCCCCCCCCCceEEEcCCCcE
Q 001295 887 -KSKL---KGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD--GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 958 (1106)
Q Consensus 887 -~~~l---~~h~~~V~~l~~s~d~~~l~s~s~--Dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~ 958 (1106)
+..+ ..+.....+++|+|||++|+++.. ++.|.+|+++ +++......+. .+ ..+..++|+|||++
T Consensus 247 ~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~--~g-----~~~~~~~~spdg~~ 319 (361)
T 3scy_A 247 EIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL--TG-----IHPRNFIITPNGKY 319 (361)
T ss_dssp EEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE--CS-----SCCCEEEECTTSCE
T ss_pred EeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec--CC-----CCCceEEECCCCCE
Confidence 2323 334455789999999999876665 4899999996 33321111111 12 35689999999999
Q ss_pred EEEE--eCCeEEEE--ecCCceEeeecccCCCCCCeeEEEEC
Q 001295 959 FLVV--HETQLAIF--ETTKLECVKQWVPRESSAPITHATFS 996 (1106)
Q Consensus 959 l~~~--~d~~v~i~--d~~~~~~~~~~~~~~h~~~v~~l~~s 996 (1106)
|+++ .++.|.+| |..+++...... ..+...+.|+.|.
T Consensus 320 l~~~~~~~~~v~v~~~d~~~g~~~~~~~-~~~~~~p~~v~~~ 360 (361)
T 3scy_A 320 LLVACRDTNVIQIFERDQATGLLTDIKK-DIKVDKPVCLKFV 360 (361)
T ss_dssp EEEEETTTTEEEEEEECTTTCCEEECSC-CEECSSEEEEEEE
T ss_pred EEEEECCCCCEEEEEEECCCCcEeecce-eeeCCCCeEEEEc
Confidence 8885 46889996 555676654421 1235678898885
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.80 E-value=1.2e-17 Score=187.10 Aligned_cols=251 Identities=11% Similarity=0.105 Sum_probs=170.5
Q ss_pred CCCeeEEEEecCCCEEEEEeCCeEEEEEcC-CCceeeeecC-CCCCeeEEEEecCCCc--eEEEee-------------C
Q 001295 810 EEAVPCFALSKNDSYVMSASGGKISLFNMM-TFKTMATFMP-PPPAATFLAFHPQDNN--IIAIGM-------------D 872 (1106)
Q Consensus 810 ~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~-~~~~~~~~~~-~~~~v~~l~~s~~d~~--~la~g~-------------~ 872 (1106)
...+..++++|||++|++++.+.|.+|++. +++....... ..+.+.+++|+| +++ +++++. .
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecC
Confidence 346788999999999998884499999997 7765443221 112366789999 787 455553 6
Q ss_pred CCcEEEEEee-cceEEEEec----CcccCeeEEEEecCCCEEEEEc-CCCcEEEEeCC-CcccccceeecccCCCCCCCC
Q 001295 873 DSSIQIYNVR-VDEVKSKLK----GHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQ 945 (1106)
Q Consensus 873 dg~v~iwd~~-~~~~~~~l~----~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~ 945 (1106)
+|.+.+|++. ++++...+. .+...+.+++|+|||++|++++ .++.|++|++. +++......+.... +. .
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~g---~ 193 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-PG---D 193 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-TT---C
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-CC---C
Confidence 8999999997 466554443 2556799999999999888765 46789999998 55432111111111 01 2
Q ss_pred CCceEEEcCCCcEEEEE--eCCeEEEEecC--CceEe------eeccc--CCCCC------CeeEEE-ECCCCCEEEEEE
Q 001295 946 SDTRVQFHQDQIHFLVV--HETQLAIFETT--KLECV------KQWVP--RESSA------PITHAT-FSCDSQLVYACF 1006 (1106)
Q Consensus 946 ~i~~~~~s~dg~~l~~~--~d~~v~i~d~~--~~~~~------~~~~~--~~h~~------~v~~l~-~s~d~~~l~t~s 1006 (1106)
.+..++|+|||++++++ .++.|.+|++. +++.. ..+.. .+|.. .+..++ |+|||++|++++
T Consensus 194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~ 273 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS 273 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred CCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEEC
Confidence 56899999999998885 36799999765 45542 12211 12222 588999 999999988776
Q ss_pred cCC------eEEEEEcC-CceeEEeeCCCcccCCCCCCCCccceEEEEeCC--CCCEEEEEeCC-CcEEEEeecCC
Q 001295 1007 LDA------TVCVFSAA-NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ--EPNEFALGLSD-GGVHVFEPLES 1072 (1106)
Q Consensus 1007 ~Dg------~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--d~~~l~t~~~D-g~v~vW~~~~~ 1072 (1106)
.+. +|.+|++. ++++..... ..+ .+ ..... .++|+|. ||++|++++.+ +.|.+|++...
T Consensus 274 ~~~~~~~~~~i~v~~~~~~g~~~~~~~---~~~-~~-~~~~~--~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 274 RANKFELQGYIAGFKLRDCGSIEKQLF---LSP-TP-TSGGH--SNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EESSTTSCCEEEEEEECTTSCEEEEEE---EEE-CS-SCCTT--CCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCCeEEEEEECCCCCEEEeee---eee-cC-CCCcc--cceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 433 89999996 666543211 000 00 11122 5889995 58898888764 89999999875
No 163
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.79 E-value=1.4e-17 Score=185.79 Aligned_cols=304 Identities=10% Similarity=0.014 Sum_probs=190.0
Q ss_pred EEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccC-CCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeE
Q 001295 462 DIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE-APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD 540 (1106)
Q Consensus 462 ~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 540 (1106)
.+++++++. ++++++.+++|++||+.+++.+..+..+. ..+..++|+++.. .+++++..++.|.+||+.+.+....
T Consensus 4 g~~~~~~~~--~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~~~v~~~~~~~i~~~d~~t~~~~~~ 80 (349)
T 1jmx_B 4 GPALKAGHE--YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNR-TAYVLNNHYGDIYGIDLDTCKNTFH 80 (349)
T ss_dssp CCCCCTTCE--EEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSS-EEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cccccCCCE--EEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCC-EEEEEeCCCCcEEEEeCCCCcEEEE
Confidence 356777777 89999999999999999999988887543 2567788765432 3455666799999999987665544
Q ss_pred eeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECC------------CeEEEEECCCcce---eEEEc
Q 001295 541 YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD------------FSIKFWDMDSVQL---LTSID 605 (1106)
Q Consensus 541 ~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------------~~i~iwd~~~~~~---~~~~~ 605 (1106)
+...... + .....+..+.++|+++++++++.+ +.|.+||+.+++. +..+.
T Consensus 81 ~~~~~~~--------~-------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 145 (349)
T 1jmx_B 81 ANLSSVP--------G-------EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP 145 (349)
T ss_dssp EESCCST--------T-------EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE
T ss_pred EEccccc--------c-------cccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc
Confidence 4332110 0 000123445566666677777754 8999999988543 34443
Q ss_pred cCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccccc
Q 001295 606 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD 685 (1106)
Q Consensus 606 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1106)
.. ..+.+++|+|+|+ +++++ +.|.+||..++ +....+.......
T Consensus 146 ~~---~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~-~~~~~~~~~~~~~----------------------------- 189 (349)
T 1jmx_B 146 MP---RQVYLMRAADDGS-LYVAG--PDIYKMDVKTG-KYTVALPLRNWNR----------------------------- 189 (349)
T ss_dssp CC---SSCCCEEECTTSC-EEEES--SSEEEECTTTC-CEEEEECSTTCCC-----------------------------
T ss_pred CC---CcccceeECCCCc-EEEcc--CcEEEEeCCCC-ceeccccccccCC-----------------------------
Confidence 33 2478899999999 55554 44999999877 3322221100000
Q ss_pred ccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEE------
Q 001295 686 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAIL------ 759 (1106)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~------ 759 (1106)
... .....+.+|...... ........+++++++....
T Consensus 190 -------------~~~-----------~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~d~~~~~~~~~~~ 232 (349)
T 1jmx_B 190 -------------KGY-----------SAPDVLYFWPHQSPR-------------HEFSMLYTIARFKDDKQDPATADLL 232 (349)
T ss_dssp -------------TTB-----------CCCBCCCCCCCCCTT-------------CEEEEEEEEEEC-------CCCEEE
T ss_pred -------------ccc-----------cCccceeeecCCCcc-------------eeEEeeeeeeecCCCcCCccccccc
Confidence 000 000011122211100 0001233456665542211
Q ss_pred -----EeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEec-CCCEEEEEeCCeE
Q 001295 760 -----ALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSASGGKI 833 (1106)
Q Consensus 760 -----~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~sdg~i 833 (1106)
....++.+++|++. . +...+..++++| ++++++++ ++.|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~--------------------------------~--~~~~~~~~~~sp~dg~~l~~~-~~~v 277 (349)
T 1jmx_B 233 YGYLSVDLKTGKTHTQEFA--------------------------------D--LTELYFTGLRSPKDPNQIYGV-LNRL 277 (349)
T ss_dssp EEEEEEETTTCCEEEEEEE--------------------------------E--CSSCEEEEEECSSCTTEEEEE-ESEE
T ss_pred eeEEEEeccCCcEEecccc--------------------------------c--CCCcceeeEecCCCCCEEEEE-cCeE
Confidence 11122333333321 1 455688999999 99999988 8999
Q ss_pred EEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCc
Q 001295 834 SLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH 893 (1106)
Q Consensus 834 ~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h 893 (1106)
.+||+.+++.+..+.. ...+.+++|+| ++++|++++.++.|++||+.+++.+..+..+
T Consensus 278 ~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 278 AKYDLKQRKLIKAANL-DHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEETTTTEEEEEEEC-SSCCCEEEECS-SSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred EEEECccCeEEEEEcC-CCCccceEECC-CCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 9999999988777763 34578999999 7887888888999999999999988887654
No 164
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.75 E-value=3e-16 Score=174.42 Aligned_cols=221 Identities=13% Similarity=0.085 Sum_probs=156.2
Q ss_pred CeeEEEEecCCCEEEEEe---CCeEEEEEcCCCceeee-ecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec-ceE
Q 001295 812 AVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEV 886 (1106)
Q Consensus 812 ~v~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~-~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~-~~~ 886 (1106)
....++++|||++|+++. +++|.+||+.+++.+.. +... ....+.+.|++...+++.+.||.+.+|+... ++.
T Consensus 109 ~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~ 186 (361)
T 2oiz_A 109 YDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKV 186 (361)
T ss_dssp CGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSE
T ss_pred CcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcE
Confidence 355688999999988875 47899999999988877 5532 2233567784557788889999999999865 555
Q ss_pred EE------EecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeccc------CCCCCCCCCCceEEEcC
Q 001295 887 KS------KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP------TGRTPTAQSDTRVQFHQ 954 (1106)
Q Consensus 887 ~~------~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~s~ 954 (1106)
.. .+..+..++ .+.+++++..++..+.++.|.++|+.............. .+..+ .....++|+|
T Consensus 187 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p--~g~~~~a~~~ 263 (361)
T 2oiz_A 187 ASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVP--GGYNLVGLHR 263 (361)
T ss_dssp EEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEE--CCSSCEEEET
T ss_pred eeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccccccc--CCeeEEEEec
Confidence 42 222233332 344578888888888999999999976432211111110 00000 1234589999
Q ss_pred CCcEEEEE-e-----------CCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCc--e
Q 001295 955 DQIHFLVV-H-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL--K 1020 (1106)
Q Consensus 955 dg~~l~~~-~-----------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~--~ 1020 (1106)
|++.+.++ . .+.|.+||+.+++.+..+.. +. +.+++|+|||++|++++. ++|.|||..++ +
T Consensus 264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~--~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~ 338 (361)
T 2oiz_A 264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG--RD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPK 338 (361)
T ss_dssp TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC--TT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCE
T ss_pred CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec--CC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcce
Confidence 98888774 3 34899999999999998874 33 999999999999998886 99999999999 8
Q ss_pred eEEeeCCCcccCCCCCCCCccceEEEEeCCCCC
Q 001295 1021 LRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1053 (1106)
Q Consensus 1021 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~ 1053 (1106)
.+.++. +.| -.|..++++| ||.
T Consensus 339 ~~~~i~-----~~G-----~~P~~~~~~p-~G~ 360 (361)
T 2oiz_A 339 LLRTIE-----GAA-----EASLQVQFHP-VGG 360 (361)
T ss_dssp EEEEET-----TSC-----SSEEEEEECC-CSC
T ss_pred eeEEec-----cCC-----CCcEEEEecC-CCC
Confidence 888764 112 3455799999 554
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.75 E-value=1.6e-16 Score=177.76 Aligned_cols=251 Identities=11% Similarity=0.031 Sum_probs=168.9
Q ss_pred cceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccc-ccCCCCCCCCeeEEEEecCC
Q 001295 744 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN-DVTDSNPEEAVPCFALSKND 822 (1106)
Q Consensus 744 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~v~~l~~s~~~ 822 (1106)
..+..++|+|++++|++++.+ .+.+|++.. +|.+... .... + ..+.+++++|||
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~---------------------~g~~~~~~~~~~--~-g~~~~~~~spdg 94 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKS---------------------PTEIVHEASHPI--G-GHPRANDADTNT 94 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEE---------------------TTEEEEEEEEEC--C-SSGGGGCTTSCC
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECC---------------------CCCEEEeeEeec--C-CCCccEEECCCC
Confidence 467889999999988888877 899998751 1111100 0000 1 124558899999
Q ss_pred CE--EEEE--------------eCCeEEEEEcC-CCceeeeec----CCCCCeeEEEEecCCCceEEEee-CCCcEEEEE
Q 001295 823 SY--VMSA--------------SGGKISLFNMM-TFKTMATFM----PPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYN 880 (1106)
Q Consensus 823 ~~--l~~~--------------sdg~i~vwd~~-~~~~~~~~~----~~~~~v~~l~~s~~d~~~la~g~-~dg~v~iwd 880 (1106)
++ ++++ .+|++.+|++. +++....+. .+...+.+++|+| |+++|++++ .++.|++|+
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~ 173 (365)
T 1jof_A 95 RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHR 173 (365)
T ss_dssp EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred CEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEE
Confidence 94 4444 36889999997 465544333 2456799999999 888877765 367999999
Q ss_pred ee-cceEE--EEec--CcccCeeEEEEecCCCEEEEEcC-CCcEEEEeCC--Cccccc-ceeecccCCCCCC-CC-----
Q 001295 881 VR-VDEVK--SKLK--GHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSD--GWEKQK-NRFLQIPTGRTPT-AQ----- 945 (1106)
Q Consensus 881 ~~-~~~~~--~~l~--~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~--~~~~~~-~~~~~~~~~~~~~-~~----- 945 (1106)
+. +++.. ..+. .|...+..++|+|||++|++++. +++|.+|+++ +++... ...+......... ..
T Consensus 174 ~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~ 253 (365)
T 1jof_A 174 KLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKG 253 (365)
T ss_dssp ECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSB
T ss_pred ECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccc
Confidence 98 67643 3343 24567899999999999887765 7899999876 333211 0112222111000 01
Q ss_pred -CCceEE-EcCCCcEEEEE--eCC-----eEEEEecC-CceEeeecc-cCCCCCCeeEEEECC---CCCEEEEEEcC-Ce
Q 001295 946 -SDTRVQ-FHQDQIHFLVV--HET-----QLAIFETT-KLECVKQWV-PRESSAPITHATFSC---DSQLVYACFLD-AT 1010 (1106)
Q Consensus 946 -~i~~~~-~s~dg~~l~~~--~d~-----~v~i~d~~-~~~~~~~~~-~~~h~~~v~~l~~s~---d~~~l~t~s~D-g~ 1010 (1106)
.+..++ |+|||++|+++ .++ .|.+|++. +++...... ...+...+..++|+| ||++|++++.+ ++
T Consensus 254 ~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~ 333 (365)
T 1jof_A 254 LYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGW 333 (365)
T ss_dssp SEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCE
T ss_pred cccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCe
Confidence 367899 99999998774 333 89999996 565443211 113345677899999 89999998865 89
Q ss_pred EEEEEcCCce
Q 001295 1011 VCVFSAANLK 1020 (1106)
Q Consensus 1011 i~vwd~~~~~ 1020 (1106)
|.+|+++...
T Consensus 334 v~v~~~~~~~ 343 (365)
T 1jof_A 334 LEIYRWKDEF 343 (365)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEEchhh
Confidence 9999997763
No 166
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.74 E-value=2.9e-16 Score=177.93 Aligned_cols=207 Identities=10% Similarity=0.034 Sum_probs=140.3
Q ss_pred cCCCCcCeEE-----EEEccCCCEEEEEeC-CC--eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecC
Q 001295 408 VKDPGVSVNR-----VIWSPDGSLFGVAYS-RH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 479 (1106)
Q Consensus 408 ~~~h~~~V~~-----l~~spdg~~las~~~-d~--~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~ 479 (1106)
+..|...+.. .+|||||++|+.++. ++ .|.+||+.+++... ...+|...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 5566655555 889999999999987 66 48888999887554 2345666666789999999 7888888
Q ss_pred CCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEE----------------------ecCCeEEEEeCCCCCc
Q 001295 480 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFST----------------------ALDGKIKAWLYDNLGS 537 (1106)
Q Consensus 480 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----------------------~~dg~i~iwd~~~~~~ 537 (1106)
++.|++||+.+++....+..+...+....|..++++.+++.. ..+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 899999999999887777767666655555446676777643 2346789999887643
Q ss_pred eeEeeCCCCeeEEEEEec-CCCeEEEeeeccceeEEEEcCCCCEEEEEEC------CCeEEEEECCCcceeEEEccCCCC
Q 001295 538 RVDYEAPGRWCTTMAYSA-DGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD------DFSIKFWDMDSVQLLTSIDADGGL 610 (1106)
Q Consensus 538 ~~~~~~~~~~v~~~~~s~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~ 610 (1106)
. .+..+...+..+.|+| ||+ .++.... ...|.++|..+++. ..+..+...
T Consensus 181 ~-~l~~~~~~~~~~~~sp~dg~---------------------~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~ 237 (388)
T 3pe7_A 181 T-VILQENQWLGHPIYRPYDDS---------------------TVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEG 237 (388)
T ss_dssp E-EEEEESSCEEEEEEETTEEE---------------------EEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTT
T ss_pred E-EeecCCccccccEECCCCCC---------------------EEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCC
Confidence 3 3333334455556666 554 5655543 34788888876544 333322211
Q ss_pred CCcCeEEEccCCCEEEEEeC-CC----cEEEEEccCC
Q 001295 611 PASPRIRFNKDGCLLAVSTN-DN----GIKILATSDG 642 (1106)
Q Consensus 611 ~~v~~v~~s~~~~~l~~~~~-dg----~i~iwd~~~~ 642 (1106)
..+..++|+|||+.|+..+. ++ .|++||+.++
T Consensus 238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (388)
T 3pe7_A 238 ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL 274 (388)
T ss_dssp EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred cccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence 23667899999997765443 22 2778877665
No 167
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.74 E-value=3e-16 Score=177.90 Aligned_cols=250 Identities=12% Similarity=0.006 Sum_probs=160.2
Q ss_pred eeccCCCCcEE-----EEEecCCCeEEEEEeccCc--EEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEE
Q 001295 345 RTLNQGSSPMS-----MDFHPVQQTLLLVGTNVGD--IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 417 (1106)
Q Consensus 345 ~~~~h~~~v~~-----~~~sp~g~~llatg~~dg~--i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~ 417 (1106)
++..|...+.. .+|||||++|++++..+|. |.+||+.+++... +..+|...+..
T Consensus 25 ~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-------------------lt~~~~~~~~~ 85 (388)
T 3pe7_A 25 RLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ-------------------LTEGRGDNTFG 85 (388)
T ss_dssp ECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-------------------CCCSSCBCSSS
T ss_pred EecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-------------------eeeCCCCCccc
Confidence 33335555555 8999999985544443674 8888998887654 24556666667
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEE--EcCCCCceEEEE-------------------
Q 001295 418 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIA--FSHPNKQLCVIT------------------- 476 (1106)
Q Consensus 418 l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~--~s~d~~~~~l~s------------------- 476 (1106)
++|||||++|+.++.++.|++||+.+++... .+..+...+.... ++++++ +++.
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T 3pe7_A 86 GFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLTDWKKFHE 160 (388)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCCSHHHHHH
T ss_pred eEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCcccccccccchhhh
Confidence 8899999999999999999999999987544 2334444454444 489998 4542
Q ss_pred ---ecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecC------CeEEEEeCCCCCceeEeeCCC--
Q 001295 477 ---CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPG-- 545 (1106)
Q Consensus 477 ---~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~-- 545 (1106)
.+.+..|.+||+.+++.. .+..+...+..+.|+|. +|..|+.+..+ ..|.++|........ +..+.
T Consensus 161 ~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~ 237 (388)
T 3pe7_A 161 FYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-VKTHAEG 237 (388)
T ss_dssp HGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-SCCCCTT
T ss_pred hhccCCcceEEEEECCCCceE-EeecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceEE-eeeCCCC
Confidence 234578999999998654 44456777888888651 44677766653 367777776543322 22222
Q ss_pred CeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEE-C-C---CeEEEEECCCcceeEEEccCC--CC-CCcCeEE
Q 001295 546 RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-D-D---FSIKFWDMDSVQLLTSIDADG--GL-PASPRIR 617 (1106)
Q Consensus 546 ~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~-d---~~i~iwd~~~~~~~~~~~~~~--~~-~~v~~v~ 617 (1106)
..+....|+|||+ .|+..+ . + ..|++||+.+++......... +. .....++
T Consensus 238 ~~~~~~~~spdg~---------------------~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~ 296 (388)
T 3pe7_A 238 ESCTHEFWVPDGS---------------------ALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSL 296 (388)
T ss_dssp EEEEEEEECTTSS---------------------CEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSE
T ss_pred cccccceECCCCC---------------------EEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCe
Confidence 2355556666665 443322 2 1 249999999987543322211 00 0123458
Q ss_pred EccCCCEEEEE---------eCCCcEEEEEccCC
Q 001295 618 FNKDGCLLAVS---------TNDNGIKILATSDG 642 (1106)
Q Consensus 618 ~s~~~~~l~~~---------~~dg~i~iwd~~~~ 642 (1106)
|+|||+.|+.. ..+..|++||+.++
T Consensus 297 ~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 297 MVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp EEEEECCC------------CCCCEEEEEETTTT
T ss_pred EccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 99999988864 44567889988765
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.71 E-value=4.2e-15 Score=165.16 Aligned_cols=304 Identities=10% Similarity=0.089 Sum_probs=193.3
Q ss_pred CCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEe----------cCCeEEEEeCCCCCceeEeeCCCCee
Q 001295 479 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA----------LDGKIKAWLYDNLGSRVDYEAPGRWC 548 (1106)
Q Consensus 479 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~v 548 (1106)
.|+.|.+||..+++.+..+..+..+ .++|++ ++++++++. .++.|.+||..+.+....+.......
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~sp--dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~ 104 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSN--DGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV 104 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECT--TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECC--CCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc
Confidence 4789999999999999888876655 777654 557888776 36789999998776665554321100
Q ss_pred EEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEEC--CCeEEEEECCCcceeEE-EccCCCCCCcCeEEEccCC-CE
Q 001295 549 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD--DFSIKFWDMDSVQLLTS-IDADGGLPASPRIRFNKDG-CL 624 (1106)
Q Consensus 549 ~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~~~-~~ 624 (1106)
. .......+.++|+|++|+++.. ++.|.+||+.+++.+.. +... ....+.+.|++ ..
T Consensus 105 ~---------------~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~----~~~~v~~~p~~~~~ 165 (361)
T 2oiz_A 105 Q---------------GLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA----GCWSVIPQPNRPRS 165 (361)
T ss_dssp C---------------BCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT----TEEEEEECTTSSSE
T ss_pred c---------------cCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC----CcceeEEcCCCCee
Confidence 0 0012233555666667877753 68999999999988877 6532 12235677765 67
Q ss_pred EEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccC
Q 001295 625 LAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLA 704 (1106)
Q Consensus 625 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1106)
+++.+.||.+.+|+.....+..... +.
T Consensus 166 ~~~~~~dg~~~~v~~~~~g~~~~~~--~~--------------------------------------------------- 192 (361)
T 2oiz_A 166 FMTICGDGGLLTINLGEDGKVASQS--RS--------------------------------------------------- 192 (361)
T ss_dssp EEEEETTSSEEEEEECTTSSEEEEE--EC---------------------------------------------------
T ss_pred EEEECCCCcEEEEEECCCCcEeeec--cc---------------------------------------------------
Confidence 8888999999999876421211000 00
Q ss_pred CCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccc
Q 001295 705 DVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKAT 784 (1106)
Q Consensus 705 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 784 (1106)
..+|+... .. ..+.+++++..++..+.++.+.++|+.......
T Consensus 193 -------------~~~~~~~~------------------~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~----- 235 (361)
T 2oiz_A 193 -------------KQMFSVKD------------------DP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV----- 235 (361)
T ss_dssp -------------CCCSCTTT------------------SC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE-----
T ss_pred -------------cceEcCCC------------------Cc-eEEEecccCCEEEEEeCCCeEEEEEecCCCcee-----
Confidence 00111100 00 011123444455555566677777654211000
Q ss_pred cccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe------------CCeEEEEEcCCCceeeeecCCCC
Q 001295 785 ASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS------------GGKISLFNMMTFKTMATFMPPPP 852 (1106)
Q Consensus 785 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s------------dg~i~vwd~~~~~~~~~~~~~~~ 852 (1106)
+..|............ .......++++|+++.+.++. .++|.+||+.+++.+.++..+.
T Consensus 236 ----~~~~~~~~~~~~~~~~----~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~- 306 (361)
T 2oiz_A 236 ----DGPWSLLNDEDKAKNW----VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD- 306 (361)
T ss_dssp ----EEEEESCCHHHHHTTC----EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-
T ss_pred ----cccccccCcccccccc----ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-
Confidence 0001111100000000 011112378999988777653 2479999999999999998776
Q ss_pred CeeEEEEecCCCceEEEeeCCCcEEEEEeecc--eEEEEecCcccCeeEEEEecCCC
Q 001295 853 AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD--EVKSKLKGHSKRITGLAFSHALN 907 (1106)
Q Consensus 853 ~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~--~~~~~l~~h~~~V~~l~~s~d~~ 907 (1106)
+.+++|+| |+++|++++. +.|.+||..++ +++..+..+......++++|||+
T Consensus 307 -p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 307 -ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp -CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred -eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999999 8888888886 99999999999 99999877778889999999986
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.68 E-value=4.6e-15 Score=163.08 Aligned_cols=251 Identities=13% Similarity=0.073 Sum_probs=184.9
Q ss_pred CCCeeEEEEecCCCEEEEEe-C------------------------CeEEEEEcCCCceeeeec-CCCCCeeEEEEecCC
Q 001295 810 EEAVPCFALSKNDSYVMSAS-G------------------------GKISLFNMMTFKTMATFM-PPPPAATFLAFHPQD 863 (1106)
Q Consensus 810 ~~~v~~l~~s~~~~~l~~~s-d------------------------g~i~vwd~~~~~~~~~~~-~~~~~v~~l~~s~~d 863 (1106)
-..+.+++++++|+++++.. + ++|.+||..+++.+..+. ++......+++++ +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 45689999999999998887 4 379999999888876654 3445789999999 8
Q ss_pred CceEEEeeCCCcEEEEEeecce-EEEEe---------cCcccCeeEEEEec-CCCEEEEEc-CCCcEEEEeCCCcccccc
Q 001295 864 NNIIAIGMDDSSIQIYNVRVDE-VKSKL---------KGHSKRITGLAFSH-ALNVLVSSG-ADSQLCVWSSDGWEKQKN 931 (1106)
Q Consensus 864 ~~~la~g~~dg~v~iwd~~~~~-~~~~l---------~~h~~~V~~l~~s~-d~~~l~s~s-~Dg~i~vwd~~~~~~~~~ 931 (1106)
++++++...++.|++||..... .+..+ .++.....+|+++| ++.++++.+ .++.|++|+... +...
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~~~- 179 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KFVT- 179 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CEEE-
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CEEE-
Confidence 8888888889999999975432 45555 34556789999999 788888886 689999999543 3211
Q ss_pred eeeccc-CCC---CCCCCCCceEEEcCC-CcEEEEE-eCCeEEEEecCCceEeeecccCCCCCCeeEEEECC------CC
Q 001295 932 RFLQIP-TGR---TPTAQSDTRVQFHQD-QIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSC------DS 999 (1106)
Q Consensus 932 ~~~~~~-~~~---~~~~~~i~~~~~s~d-g~~l~~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~------d~ 999 (1106)
.+... .+. ......+..++++|+ +.++++. .++.|++||..+++.+..+....+...+.+++|+| +|
T Consensus 180 -~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g 258 (329)
T 3fvz_A 180 -QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNG 258 (329)
T ss_dssp -EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEEC
T ss_pred -EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCC
Confidence 11100 000 001124688999999 6666663 67899999999899988887666778899999999 33
Q ss_pred CEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCC
Q 001295 1000 QLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1072 (1106)
Q Consensus 1000 ~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~ 1072 (1106)
+..++...+.+|++||..+++.+..+... .+ ..-.|..++++| ||+++++...++.|++|++...
T Consensus 259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~----~~---~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPV----RK---HFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CCCTTCSCCCCEEEEETTTCCEEEEECCS----SS---CCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEEC
T ss_pred CEEeccCCCcEEEEEEcCCCeEEEEEcCC----CC---ccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCcc
Confidence 32223334458999999999998877511 11 113355899999 6888999999999999998753
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.68 E-value=1.6e-14 Score=158.77 Aligned_cols=250 Identities=12% Similarity=0.119 Sum_probs=185.2
Q ss_pred CCcEEEEEecCCCeEEEEEecc------------------------CcEEEEecCCcceeEEeeeeeeccCcCCcccccc
Q 001295 351 SSPMSMDFHPVQQTLLLVGTNV------------------------GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAA 406 (1106)
Q Consensus 351 ~~v~~~~~sp~g~~llatg~~d------------------------g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~ 406 (1106)
..|.+++++|+|+ ++++.+.+ ++|.+||..+++.+..
T Consensus 24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------------ 84 (329)
T 3fvz_A 24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS------------------ 84 (329)
T ss_dssp SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE------------------
T ss_pred CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec------------------
Confidence 6799999999998 57777766 4799999988876542
Q ss_pred ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCc-eeeeeeee---------ccccCCeeEEEEcC-CCCceEEE
Q 001295 407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEI---------DAHVGGVNDIAFSH-PNKQLCVI 475 (1106)
Q Consensus 407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~-~~~~~~~l---------~~h~~~V~~~~~s~-d~~~~~l~ 475 (1106)
.-.++-.....++++|+|+++++...++.|++||..+.. .+. .+ .++......++|+| ++. +++
T Consensus 85 ~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv 159 (329)
T 3fvz_A 85 SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV 159 (329)
T ss_dssp ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence 112445578999999999988888889999999987542 222 23 34555789999999 676 677
Q ss_pred Eec-CCCcEEEEeCCCCceeEEEecc----------CCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEee--
Q 001295 476 TCG-DDKTIKVWDATNGAKQYIFEGH----------EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-- 542 (1106)
Q Consensus 476 s~~-~d~~i~iwd~~~~~~~~~~~~h----------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-- 542 (1106)
+.+ .++.|++|| .+|+.+..+... ......++++++. +.++++...++.|++||..+++....+.
T Consensus 160 ~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~-g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~ 237 (329)
T 3fvz_A 160 SDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHL-DQLCVADRENGRIQCFKTDTKEFVREIKHA 237 (329)
T ss_dssp EECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTT-TEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred EeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCC-CEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence 776 689999999 678877777432 2347888876432 5788888899999999998776666553
Q ss_pred CCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEcc-CCCCCCcCeEEEccC
Q 001295 543 APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA-DGGLPASPRIRFNKD 621 (1106)
Q Consensus 543 ~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~ 621 (1106)
.....+..++++| +. .+..+++.+++...+..|++|+..+++.+..+.. ..+......++++|+
T Consensus 238 ~~~~~~~~~~~~p-g~--------------~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~d 302 (329)
T 3fvz_A 238 SFGRNVFAISYIP-GF--------------LFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASED 302 (329)
T ss_dssp TTTTCEEEEEEET-TE--------------EEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTT
T ss_pred ccCCCcceeeecC-CE--------------EEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCC
Confidence 2344667777777 32 1112333344445567999999999999988742 223446789999999
Q ss_pred CCEEEEEeCCCcEEEEEccC
Q 001295 622 GCLLAVSTNDNGIKILATSD 641 (1106)
Q Consensus 622 ~~~l~~~~~dg~i~iwd~~~ 641 (1106)
|.++++...++.|++|++..
T Consensus 303 G~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 303 GTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp SEEEEEESSSCCEEEEEEEE
T ss_pred CCEEEEECCCCEEEEEeCCc
Confidence 98888888899999999864
No 171
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.67 E-value=1.2e-13 Score=160.88 Aligned_cols=341 Identities=12% Similarity=0.105 Sum_probs=223.4
Q ss_pred cCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEE
Q 001295 512 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIK 591 (1106)
Q Consensus 512 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 591 (1106)
++.+.++++...++.|.++|..+.+.+..+.... .+..+.++||| +++++++.++.|.
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDG---------------------r~lyv~~~dg~V~ 221 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASG---------------------RYLFVIGRDGKVN 221 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTS---------------------CEEEEEETTSEEE
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCC---------------------CEEEEEcCCCeEE
Confidence 3344677888889999999999877666554322 23345555555 5788888999999
Q ss_pred EEECC--CcceeEEEccCCCCCCcCeEEEc----cCCCEEEEEeC-CCcEEEEEccCCchhhhhhcccccccccCCCCCC
Q 001295 592 FWDMD--SVQLLTSIDADGGLPASPRIRFN----KDGCLLAVSTN-DNGIKILATSDGIRLLRTFENLAYDASRTSENSK 664 (1106)
Q Consensus 592 iwd~~--~~~~~~~~~~~~~~~~v~~v~~s----~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1106)
+||+. +++.+..+.... ....++|+ |||++++++.. ++.+.++|..+. +.++.+......
T Consensus 222 viD~~~~t~~~v~~i~~G~---~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~-~~~~~i~~~~~~--------- 288 (567)
T 1qks_A 222 MIDLWMKEPTTVAEIKIGS---EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL-EPKKIQSTRGMT--------- 288 (567)
T ss_dssp EEETTSSSCCEEEEEECCS---EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC-CEEEEEECCEEC---------
T ss_pred EEECCCCCCcEeEEEecCC---CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC-cEEEEEeccccc---------
Confidence 99996 788887776432 25689999 69998887765 589999997665 332222100000
Q ss_pred CCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCcccccc
Q 001295 665 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 744 (1106)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 744 (1106)
.++ .. .....
T Consensus 289 -------------------------------------------------~~~-------------~~--------~~p~~ 298 (567)
T 1qks_A 289 -------------------------------------------------YDE-------------QE--------YHPEP 298 (567)
T ss_dssp -------------------------------------------------TTT-------------CC--------EESCC
T ss_pred -------------------------------------------------ccc-------------cc--------ccCCC
Confidence 000 00 00122
Q ss_pred ceEEEEEcCCCceEEEee-cCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCC
Q 001295 745 KISRLIFTNSGNAILALA-SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 823 (1106)
Q Consensus 745 ~i~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~ 823 (1106)
++..+.+++++..+++.. .+|.|.++|...... +....+ ........+.|+|+++
T Consensus 299 rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~---------------------~~v~~i---~~~~~~~d~~~~pdgr 354 (567)
T 1qks_A 299 RVAAILASHYRPEFIVNVKETGKILLVDYTDLNN---------------------LKTTEI---SAERFLHDGGLDGSHR 354 (567)
T ss_dssp CEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE---------------------EEEEEE---ECCSSEEEEEECTTSC
T ss_pred ceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc---------------------ceeeee---eccccccCceECCCCC
Confidence 567788888766555444 458888887653110 000000 1234566889999999
Q ss_pred EEEEEe--CCeEEEEEcCCCceeeeecC-----CCCCeeEEEEecCCCceEEEee-CCCcEEEEEeec-------ceEEE
Q 001295 824 YVMSAS--GGKISLFNMMTFKTMATFMP-----PPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRV-------DEVKS 888 (1106)
Q Consensus 824 ~l~~~s--dg~i~vwd~~~~~~~~~~~~-----~~~~v~~l~~s~~d~~~la~g~-~dg~v~iwd~~~-------~~~~~ 888 (1106)
+++++. +++|.++|+.+++.+..+.. |.+.-..+ ++|+.+.+++++. .++.|.++|..+ .+.++
T Consensus 355 ~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~ 433 (567)
T 1qks_A 355 YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILD 433 (567)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEE
T ss_pred EEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEE
Confidence 998877 68999999999988766543 33222222 5773355656553 468999999988 67888
Q ss_pred EecCcccCeeEEEEecCCCEEEEEcC-------CCcEEEEeCCCccc---ccc-eeeccc--CCCCCCCCCCceEEEcCC
Q 001295 889 KLKGHSKRITGLAFSHALNVLVSSGA-------DSQLCVWSSDGWEK---QKN-RFLQIP--TGRTPTAQSDTRVQFHQD 955 (1106)
Q Consensus 889 ~l~~h~~~V~~l~~s~d~~~l~s~s~-------Dg~i~vwd~~~~~~---~~~-~~~~~~--~~~~~~~~~i~~~~~s~d 955 (1106)
++......-..+..+||+++|.+... .++|.|+|+.+.+. ... ..+.+. .+.......+..+.|+++
T Consensus 434 ~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (567)
T 1qks_A 434 SFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKD 513 (567)
T ss_dssp EEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTT
T ss_pred EEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCC
Confidence 88765444355788999999988663 35899999987611 111 222210 011111136789999999
Q ss_pred CcEEEEE-e-----CCeEEEEecCCceEeeecc
Q 001295 956 QIHFLVV-H-----ETQLAIFETTKLECVKQWV 982 (1106)
Q Consensus 956 g~~l~~~-~-----d~~v~i~d~~~~~~~~~~~ 982 (1106)
|+++.++ . ++.|.|+|.++++.+..+.
T Consensus 514 G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 514 GTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp SSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 9998874 2 6899999999999988775
No 172
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.67 E-value=2.3e-15 Score=171.09 Aligned_cols=298 Identities=9% Similarity=0.041 Sum_probs=185.5
Q ss_pred CeEEEEEccCCCEEEEEeCC---CeEEEEEccCCceeeeeeeeccccCC-eeEEEEcCCCCceEEEEecCCCcEEEEeCC
Q 001295 414 SVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGG-VNDIAFSHPNKQLCVITCGDDKTIKVWDAT 489 (1106)
Q Consensus 414 ~V~~l~~spdg~~las~~~d---~~v~iwd~~~~~~~~~~~~l~~h~~~-V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~ 489 (1106)
.+.+++|||||++|+.+... ..|.+||+.+++... +..+... ...+.|+|||+ .|+.++.++.|++||+.
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~----l~~~~~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~ 110 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ----LTEGKGDNTFGGFISTDER--AFFYVKNELNLMKVDLE 110 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE----CCCSSCBCTTTCEECTTSS--EEEEEETTTEEEEEETT
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE----eecCCCCccccceECCCCC--EEEEEEcCCcEEEEECC
Confidence 37788999999999887543 468889998876543 3333333 34488999999 68888888899999999
Q ss_pred CCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccce
Q 001295 490 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 569 (1106)
Q Consensus 490 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i 569 (1106)
+++.......+.. |. +++..|+..+.++...+|+. ...++|+++
T Consensus 111 ~~~~~~~~~~~~~------~~--~~g~~l~~~~~~~~~~~~~~-----------------~~~~spdg~----------- 154 (396)
T 3c5m_A 111 TLEEQVIYTVDEE------WK--GYGTWVANSDCTKLVGIEIL-----------------KRDWQPLTS----------- 154 (396)
T ss_dssp TCCEEEEEECCTT------EE--EEEEEEECTTSSEEEEEEEE-----------------GGGCCCCCS-----------
T ss_pred CCCcEEEEecccc------cC--CCCCEEEeccCCcccccccc-----------------ccccCCCCc-----------
Confidence 8887665554443 22 23355665555555544421 112334443
Q ss_pred eEEEEcCCCCEEEEE-----ECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEcc-CCCEEEEEeCCC------cEEEE
Q 001295 570 GVVQFDTTKNRFLAA-----GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDN------GIKIL 637 (1106)
Q Consensus 570 ~~~~~~~~~~~l~~~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg------~i~iw 637 (1106)
.++.. ..+..|++||+.+++....... ...+..+.|+| +++.|+..+.++ .|.+|
T Consensus 155 ----------~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~---~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~ 221 (396)
T 3c5m_A 155 ----------WEKFAEFYHTNPTCRLIKVDIETGELEVIHQD---TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLV 221 (396)
T ss_dssp ----------HHHHHHHHHTCCCEEEEEEETTTCCEEEEEEE---SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEE
T ss_pred ----------ceeeeeeccCCCcceEEEEECCCCcEEeeccC---CcccccceECCCCCCEEEEEecCCCCCCCceEEEE
Confidence 44432 3567899999998876655532 23577899999 888777766432 35555
Q ss_pred EccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCc
Q 001295 638 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDK 717 (1106)
Q Consensus 638 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 717 (1106)
++.++. .
T Consensus 222 d~~~~~-~------------------------------------------------------------------------ 228 (396)
T 3c5m_A 222 NEDGSN-V------------------------------------------------------------------------ 228 (396)
T ss_dssp ETTSCC-C------------------------------------------------------------------------
T ss_pred ECCCCc-e------------------------------------------------------------------------
Confidence 543320 0
Q ss_pred eeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecC-----ceEEEeeccccccCCCCccccccCcccc
Q 001295 718 SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-----AIHLLWKWQRTERNSSGKATASVAPQLW 792 (1106)
Q Consensus 718 i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~w 792 (1106)
..+.. ......+..++|+|+|+.|+.++.+ +.|++||+.
T Consensus 229 ---------------~~l~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~------------------- 272 (396)
T 3c5m_A 229 ---------------RKIKE--HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPE------------------- 272 (396)
T ss_dssp ---------------EESSC--CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTT-------------------
T ss_pred ---------------eEeec--cCCCccccceEECCCCCEEEEEecCCCCccceEEEEECC-------------------
Confidence 00000 0012356788999999988777654 347777654
Q ss_pred CCCCCCccccccCCCCCCCCeeEEEEec-CCCEEEEEe-----------------CCeEEEEEcCCCceeeeecCCCC--
Q 001295 793 QPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-----------------GGKISLFNMMTFKTMATFMPPPP-- 852 (1106)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~s-----------------dg~i~vwd~~~~~~~~~~~~~~~-- 852 (1106)
++....... .. ... +.|+| ||++++++. +..|.+||+.+++.. .+..+..
T Consensus 273 ---~g~~~~l~~----~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~ 342 (396)
T 3c5m_A 273 ---TLENEEVMV----MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSW 342 (396)
T ss_dssp ---TCCEEEEEE----CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCC
T ss_pred ---CCCeEEeee----CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCcc
Confidence 333221100 11 123 88999 999888753 367999999887653 3433433
Q ss_pred ---------CeeEEEEecCCCceEEEeeC-CCcEEEEE--eecceE
Q 001295 853 ---------AATFLAFHPQDNNIIAIGMD-DSSIQIYN--VRVDEV 886 (1106)
Q Consensus 853 ---------~v~~l~~s~~d~~~la~g~~-dg~v~iwd--~~~~~~ 886 (1106)
.+..++|+| |++.|+.++. ++...||. +.+++.
T Consensus 343 ~~~~~~~~~~~~~~~~s~-dg~~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 343 DVLDGDRQITHPHPSFTP-NDDGVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp CCBTTBSSTTCCCCEECT-TSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred ccccccccCCCCCceEcc-CCCeEEEEecCCCCceEEEEEEccccc
Confidence 256789999 7877766654 56555554 444443
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.67 E-value=2.1e-14 Score=154.69 Aligned_cols=243 Identities=11% Similarity=0.122 Sum_probs=177.3
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeec------CCCCCeeEEEEecCCCceEEEeeC-CCcEEEEE
Q 001295 809 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM------PPPPAATFLAFHPQDNNIIAIGMD-DSSIQIYN 880 (1106)
Q Consensus 809 ~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~------~~~~~v~~l~~s~~d~~~la~g~~-dg~v~iwd 880 (1106)
+-..+.+++++++++++++.. ++.|.+||.. ++.+..+. ++...+..+++++.+++++++... ++.|++||
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 456689999999999888776 7999999987 55555553 234568899995327777776643 88999999
Q ss_pred eecceEEEEec-CcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEE
Q 001295 881 VRVDEVKSKLK-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 959 (1106)
Q Consensus 881 ~~~~~~~~~l~-~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l 959 (1106)
.+++.+..+. .+...+.+++++++|+++++...++.|.+|+... +... .+.. .+. ...+..++++++|+++
T Consensus 107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~--~~~~-~~~---~~~p~~i~~~~~g~l~ 178 (286)
T 1q7f_A 107 -QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLH--KFGC-SKH---LEFPNGVVVNDKQEIF 178 (286)
T ss_dssp -TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEE--EEEC-TTT---CSSEEEEEECSSSEEE
T ss_pred -CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEE--EeCC-CCc---cCCcEEEEECCCCCEE
Confidence 5677776664 3456789999999999888888889999999654 2111 1111 111 1356899999999977
Q ss_pred EEE-eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCC-eEEEEEcCCceeEEeeCCCcccCCCCCC
Q 001295 960 LVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-TVCVFSAANLKLRCRINPSAYLPAGVSS 1037 (1106)
Q Consensus 960 ~~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1037 (1106)
++. .++.|++||.. ++.+..+...++...+..|+++++|+++++...++ .|++||. +++.+..+.. . .
T Consensus 179 v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~----~----~ 248 (286)
T 1q7f_A 179 ISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALES----K----V 248 (286)
T ss_dssp EEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEE----S----S
T ss_pred EEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcc----c----C
Confidence 774 68899999974 55556655334446789999999999888887776 9999995 5666665541 1 1
Q ss_pred CCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCC
Q 001295 1038 SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1072 (1106)
Q Consensus 1038 ~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~ 1072 (1106)
....+..++++| ||+++++ +.|++|++|++...
T Consensus 249 ~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 249 KHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp CCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCC
T ss_pred CCCcceeEEECC-CCcEEEE-CCCCeEEEEEcccc
Confidence 112355899999 6777776 67999999998654
No 174
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.67 E-value=1.4e-13 Score=160.30 Aligned_cols=330 Identities=12% Similarity=0.117 Sum_probs=218.7
Q ss_pred EEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEcc--CCchhhhhhcccccccc
Q 001295 580 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS--DGIRLLRTFENLAYDAS 657 (1106)
Q Consensus 580 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~ 657 (1106)
.+++...++.|.++|..+++.+..+.... .+..+.|+|||+++++++.++.|.+||+. ++ +.+..+.
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v~~~i~~g~---~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~-~~v~~i~------- 237 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEIKTVLDTGY---AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP-TTVAEIK------- 237 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECSS---CEEEEEECTTSCEEEEEETTSEEEEEETTSSSC-CEEEEEE-------
T ss_pred EEEEeCCCCeEEEEECCCCeEEEEEeCCC---CccceEECCCCCEEEEEcCCCeEEEEECCCCCC-cEeEEEe-------
Confidence 46667789999999999999998886432 35689999999999999999999999985 33 1111110
Q ss_pred cCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceeccc
Q 001295 658 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL 737 (1106)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~ 737 (1106)
T Consensus 238 -------------------------------------------------------------------------------- 237 (567)
T 1qks_A 238 -------------------------------------------------------------------------------- 237 (567)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccceEEEEEc----CCCceEEEeecC-ceEEEeeccccccCCCCccccccCccccCCCCCCccccccCC-CCC-C
Q 001295 738 PENLRATKISRLIFT----NSGNAILALASN-AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD-SNP-E 810 (1106)
Q Consensus 738 ~~~~~~~~i~~~~~s----~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~-~ 810 (1106)
.......++|+ |||++++++... +.+.++|..+.+. +... ..+... ..+ ..| .
T Consensus 238 ----~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~------~~~i-------~~~~~~---~~~~~~~p~ 297 (567)
T 1qks_A 238 ----IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP------KKIQ-------STRGMT---YDEQEYHPE 297 (567)
T ss_dssp ----CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE------EEEE-------ECCEEC---TTTCCEESC
T ss_pred ----cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE------EEEE-------eccccc---cccccccCC
Confidence 11234688999 699988887774 8999988543211 0000 000000 000 001 2
Q ss_pred CCeeEEEEecCCCEEEEEe--CCeEEEEEcCCCceee--eecCCCCCeeEEEEecCCCceEEEee-CCCcEEEEEeecce
Q 001295 811 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDE 885 (1106)
Q Consensus 811 ~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~--~~~~~~~~v~~l~~s~~d~~~la~g~-~dg~v~iwd~~~~~ 885 (1106)
..+..+..++++..++... .|.|.++|..+.+.+. .+. .......+.|+| ++++++++. .++.|.++|+.+++
T Consensus 298 ~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~k 375 (567)
T 1qks_A 298 PRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGK 375 (567)
T ss_dssp CCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTE
T ss_pred CceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECC-CCCEEEEEeCCCCeEEEEECCCCc
Confidence 3678899999887666654 5999999998754322 222 234567889999 777766554 67899999999999
Q ss_pred EEEEecC-----cccCeeEEEEecCCCEE-EEEc-CCCcEEEEeCCCcccc--cceeecccCCCCCCCCCCceEEEcCCC
Q 001295 886 VKSKLKG-----HSKRITGLAFSHALNVL-VSSG-ADSQLCVWSSDGWEKQ--KNRFLQIPTGRTPTAQSDTRVQFHQDQ 956 (1106)
Q Consensus 886 ~~~~l~~-----h~~~V~~l~~s~d~~~l-~s~s-~Dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~s~dg 956 (1106)
++..+.. |.+.-..+ ++|++..+ +++. .+++|.++|..+.+.. ....++...... ..-..+.++|++
T Consensus 376 l~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g---~g~~~i~~~p~~ 451 (567)
T 1qks_A 376 LVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALG---GGSLFIKTHPNS 451 (567)
T ss_dssp EEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC---SCCCCEECCTTC
T ss_pred EEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCC---CCCEEEEeCCCC
Confidence 8776643 43222222 57875544 4443 5689999999873211 111222222211 123568899999
Q ss_pred cEEEEEe--------CCeEEEEecCCc-----e-Eeeecc------cCCCCCCeeEEEECCCCCEEEEEE-----cCCeE
Q 001295 957 IHFLVVH--------ETQLAIFETTKL-----E-CVKQWV------PRESSAPITHATFSCDSQLVYACF-----LDATV 1011 (1106)
Q Consensus 957 ~~l~~~~--------d~~v~i~d~~~~-----~-~~~~~~------~~~h~~~v~~l~~s~d~~~l~t~s-----~Dg~i 1011 (1106)
+++.+.. ..+|.++|+.+. . ....+. .......+..+.|++||+++..+. .++.|
T Consensus 452 ~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i 531 (567)
T 1qks_A 452 QYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESAL 531 (567)
T ss_dssp SEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEE
T ss_pred CeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcE
Confidence 9999854 358999999877 2 111221 111245789999999999987663 37999
Q ss_pred EEEEcCCceeEEeeC
Q 001295 1012 CVFSAANLKLRCRIN 1026 (1106)
Q Consensus 1012 ~vwd~~~~~~~~~~~ 1026 (1106)
.|+|..|++++.++.
T Consensus 532 ~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 532 VVVDDKTLELKHVIK 546 (567)
T ss_dssp EEEETTTTEEEEEEC
T ss_pred EEEECCCceEEEEeC
Confidence 999999999998887
No 175
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.66 E-value=3.2e-15 Score=169.90 Aligned_cols=238 Identities=13% Similarity=-0.006 Sum_probs=152.7
Q ss_pred cEEEEEecCCCeEEEEEeccC--cEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEE
Q 001295 353 PMSMDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 430 (1106)
Q Consensus 353 v~~~~~sp~g~~llatg~~dg--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 430 (1106)
+.+++|||||++|+++...++ .|.+||+.+++.... ..++......+.|||||++|+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l-------------------~~~~~~~~~~~~~spdg~~l~~~ 98 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL-------------------TEGKGDNTFGGFISTDERAFFYV 98 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC-------------------CCSSCBCTTTCEECTTSSEEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe-------------------ecCCCCccccceECCCCCEEEEE
Confidence 788999999998555554433 688889888765431 12222233347899999999999
Q ss_pred eCCCeEEEEEccCCceeeeeeeeccccCCeeE-------------------EEEcCCCCceEEEEe-----cCCCcEEEE
Q 001295 431 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVND-------------------IAFSHPNKQLCVITC-----GDDKTIKVW 486 (1106)
Q Consensus 431 ~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~-------------------~~~s~d~~~~~l~s~-----~~d~~i~iw 486 (1106)
+.++.|.+||+.+++... + ...+...... +.|+|+++. ++.. ..+..|++|
T Consensus 99 ~~~~~l~~~d~~~~~~~~-~--~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~--~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 99 KNELNLMKVDLETLEEQV-I--YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW--EKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp ETTTEEEEEETTTCCEEE-E--EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH--HHHHHHHHTCCCEEEEEE
T ss_pred EcCCcEEEEECCCCCcEE-E--EecccccCCCCCEEEeccCCccccccccccccCCCCcc--eeeeeeccCCCcceEEEE
Confidence 999999999999887543 1 2223332222 356788874 3332 466789999
Q ss_pred eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecC------CeEEEEeCCCCCceeEeeCC-CCeeEEEEEecCCCe
Q 001295 487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAP-GRWCTTMAYSADGTR 559 (1106)
Q Consensus 487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~ 559 (1106)
|+.+++..... .+...+..+.|++. ++..|+..+.+ ..|.+||+............ ...+..+.|+|||+
T Consensus 174 d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~- 250 (396)
T 3c5m_A 174 DIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGS- 250 (396)
T ss_dssp ETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSS-
T ss_pred ECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCC-
Confidence 99988765544 46777888888662 33556555443 46888887654322221111 12345555555554
Q ss_pred EEEeeeccceeEEEEcCCCCEEEEEECC-----CeEEEEECCCcceeEEEccCCCCCCcCeEEEcc-CCCEEEEEeC---
Q 001295 560 TYQGFRKRSLGVVQFDTTKNRFLAAGDD-----FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN--- 630 (1106)
Q Consensus 560 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~--- 630 (1106)
+|+.++.+ +.|++||+.+++......... .. +.|+| ||+++++++.
T Consensus 251 --------------------~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p 305 (396)
T 3c5m_A 251 --------------------AMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDAP 305 (396)
T ss_dssp --------------------CEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC-
T ss_pred --------------------EEEEEecCCCCccceEEEEECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCcc
Confidence 55554432 459999998887654433221 22 89999 9998887652
Q ss_pred -------------CCcEEEEEccCC
Q 001295 631 -------------DNGIKILATSDG 642 (1106)
Q Consensus 631 -------------dg~i~iwd~~~~ 642 (1106)
++.|++||+.++
T Consensus 306 ~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 306 VDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp ---------CCCCCCEEEEEETTTT
T ss_pred eeeccccccccCCCCcEEEEecccC
Confidence 356788877655
No 176
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.65 E-value=8.4e-15 Score=178.79 Aligned_cols=335 Identities=9% Similarity=0.014 Sum_probs=199.4
Q ss_pred eeccccCCeeEEEEcCCCCceEEEEe--cCCCcEEEEeCCCCceeEEEeccCCCeE---------EEeccccCCceE-EE
Q 001295 452 EIDAHVGGVNDIAFSHPNKQLCVITC--GDDKTIKVWDATNGAKQYIFEGHEAPVY---------SVCPHHKENIQF-IF 519 (1106)
Q Consensus 452 ~l~~h~~~V~~~~~s~d~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~h~~~v~---------~~~~~~~~~~~~-l~ 519 (1106)
.+.+|...|..++|++++- ++++. +.++...||....+.....+..|...+. ...|+.++||+. |+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEV--WWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp HHHHTCSCCEEEEEETTEE--EEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred HHhhcCCccceeEEcCCeE--EEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence 3667999999999997754 67777 6788999999765666777777776655 555543466676 65
Q ss_pred EEec-CCeEEEEeCC--CCCceeEeeC-----CCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECC----
Q 001295 520 STAL-DGKIKAWLYD--NLGSRVDYEA-----PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---- 587 (1106)
Q Consensus 520 s~~~-dg~i~iwd~~--~~~~~~~~~~-----~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---- 587 (1106)
.++. +..|.+|++. .......+.. +...+..++|+|||+ .|+.++.+
T Consensus 96 ~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~---------------------~l~~~~~~~~~~ 154 (662)
T 3azo_A 96 FTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERG---------------------EVWCMAEEFTGE 154 (662)
T ss_dssp EEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTT---------------------EEEEEEEEECSS
T ss_pred EEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCC---------------------EEEEEEecccCC
Confidence 5543 5667666665 2033333333 333455555555555 67766655
Q ss_pred ------CeEEEEECCC------cceeEEEc-cCCCCCCcCeEEEccCCCEEEEEeCCC--------cEEEEEcc-CCchh
Q 001295 588 ------FSIKFWDMDS------VQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDN--------GIKILATS-DGIRL 645 (1106)
Q Consensus 588 ------~~i~iwd~~~------~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg--------~i~iwd~~-~~~~~ 645 (1106)
..|++||+.+ ++.. .+. .+ ...+..++|+|||++|+.++.++ .|++||+. ++. .
T Consensus 155 ~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~--~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~-~ 230 (662)
T 3azo_A 155 GPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDA--HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR-F 230 (662)
T ss_dssp STTCEEEEEEEEETTSTTTTCGGGSE-ESSCSC--SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC-E
T ss_pred CCCCceeEEEEEECCCCccccCCcee-EEEecC--CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc-c
Confidence 5899999988 5543 333 22 23577899999999999887543 57777765 230 0
Q ss_pred hhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCC
Q 001295 646 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 725 (1106)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 725 (1106)
T Consensus 231 -------------------------------------------------------------------------------- 230 (662)
T 3azo_A 231 -------------------------------------------------------------------------------- 230 (662)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccC
Q 001295 726 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 805 (1106)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 805 (1106)
.....+. ..+...+..++|+|||+.++++..++...||.++ ..++..... ..
T Consensus 231 ----~~~~~l~---~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~--------------------~~~~~~~~l-~~ 282 (662)
T 3azo_A 231 ----ADTRTLL---GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVD--------------------PATGAATQL-CR 282 (662)
T ss_dssp ----EEEEEEE---EETTBCEEEEEECTTSCEEEEECTTSSCEEEEEC--------------------TTTCCEEES-SC
T ss_pred ----cccEEeC---CCCCceEcceEECCCCeEEEEECCCCCeEEEEEE--------------------CCCCceeec-cc
Confidence 0000000 1134667889999999966666667744444332 111211110 00
Q ss_pred CC------CCCCCeeEEEEecCCCEEEEEeCCeEEEE--EcCCCceeeeecCCCCCeeEE-EEecCCCceEEEeeCCC--
Q 001295 806 DS------NPEEAVPCFALSKNDSYVMSASGGKISLF--NMMTFKTMATFMPPPPAATFL-AFHPQDNNIIAIGMDDS-- 874 (1106)
Q Consensus 806 ~~------~~~~~v~~l~~s~~~~~l~~~sdg~i~vw--d~~~~~~~~~~~~~~~~v~~l-~~s~~d~~~la~g~~dg-- 874 (1106)
.. .-.-.+..++|++++++++++..+.++|| |..+++ +..+..+...+..+ +++. +..++++++.+.
T Consensus 283 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~ 360 (662)
T 3azo_A 283 REEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGE-LVDAAGPWTEWAATLTVSG-TRAVGVAASPRTAY 360 (662)
T ss_dssp CSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTE-EEECCSSCCEEEEEEEEET-TEEEEEEEETTEEE
T ss_pred ccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCc-EEEecCCCCeEEEEEecCC-CEEEEEEcCCCCCC
Confidence 00 00111457899999999888876777888 555554 67777777777777 5544 333444455554
Q ss_pred cEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeC
Q 001295 875 SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 923 (1106)
Q Consensus 875 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~ 923 (1106)
.|++||+.+++.......|...+....+++.....+.+..+..|..|-+
T Consensus 361 ~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~~ 409 (662)
T 3azo_A 361 EVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIY 409 (662)
T ss_dssp EEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEEEE
T ss_pred EEEEEECCCCceEEeecCCcccCCccccCcceEEEEEcCCCCEEEEEEE
Confidence 4555566677655444455444444444444444444434445666644
No 177
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.64 E-value=1.7e-14 Score=176.06 Aligned_cols=243 Identities=9% Similarity=-0.030 Sum_probs=159.6
Q ss_pred eccCCCCcEEEEEecCCCeEEEEE--eccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeE-------
Q 001295 346 TLNQGSSPMSMDFHPVQQTLLLVG--TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN------- 416 (1106)
Q Consensus 346 ~~~h~~~v~~~~~sp~g~~llatg--~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~------- 416 (1106)
...|...|..++|++++-+ ++++ +.++...||....+..... +..|...|.
T Consensus 19 ~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~-------------------l~~~~~~~~~~~~~~~ 78 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVW-WVAPRPAEAGRATLVRRRADGAEES-------------------ALPAPWNVRNRVFEYS 78 (662)
T ss_dssp HHHTCSCCEEEEEETTEEE-EEEEETTTTTEEEEEEECTTSCEEE-------------------SSCTTCCBCCCGGGTC
T ss_pred HhhcCCccceeEEcCCeEE-EEecCcccCCcEEEEEECCCCCcce-------------------eCCCCccccccccccC
Confidence 4458999999999988653 5555 4478899999644433321 344544554
Q ss_pred --EEEEc--cCCCE-EEEEeC-CCeEEEEEcc--C-Cceeeeeeeecc-----ccCCeeEEEEcCCCCceEEEEecCC--
Q 001295 417 --RVIWS--PDGSL-FGVAYS-RHIVQIYSYH--G-GDEVRQHLEIDA-----HVGGVNDIAFSHPNKQLCVITCGDD-- 480 (1106)
Q Consensus 417 --~l~~s--pdg~~-las~~~-d~~v~iwd~~--~-~~~~~~~~~l~~-----h~~~V~~~~~s~d~~~~~l~s~~~d-- 480 (1106)
...|+ |||++ |+.++. +..|.+|++. + ++. . .+.. |...+.+++|+|||+ .|++++.|
T Consensus 79 ~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~-~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~ 152 (662)
T 3azo_A 79 GFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP-R---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFT 152 (662)
T ss_dssp CCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCC-E---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEEC
T ss_pred CccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCC-E---eccCCccCCCCccccCcEECCCCC--EEEEEEeccc
Confidence 55565 99999 877654 4566666665 3 442 2 2444 677899999999999 67766665
Q ss_pred --------CcEEEEeCCC------CceeEEEe-ccCCCeEEEeccccCCceEEEEEecC--------CeEEEEeCC-CCC
Q 001295 481 --------KTIKVWDATN------GAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALD--------GKIKAWLYD-NLG 536 (1106)
Q Consensus 481 --------~~i~iwd~~~------~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~-~~~ 536 (1106)
..|++||+.+ ++ ...+. .+...+..++|+ +||++|+.++.+ ..|.+||+. ++.
T Consensus 153 ~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~S--pDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~ 229 (662)
T 3azo_A 153 GEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLS--PDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR 229 (662)
T ss_dssp SSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEEC--TTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC
T ss_pred CCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceEC--CCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc
Confidence 5899999987 44 45555 566677777775 556788877755 379999988 331
Q ss_pred --ceeEe-eCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCC--eEEEEECCCcceeEEEccCCCC-
Q 001295 537 --SRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF--SIKFWDMDSVQLLTSIDADGGL- 610 (1106)
Q Consensus 537 --~~~~~-~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~- 610 (1106)
....+ ..+...+. .+.|+|+|++++++..++ .|++||+.+++.......+...
T Consensus 230 ~~~~~~l~~~~~~~~~---------------------~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 288 (662)
T 3azo_A 230 FADTRTLLGGPEEAIA---------------------QAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFA 288 (662)
T ss_dssp EEEEEEEEEETTBCEE---------------------EEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSS
T ss_pred ccccEEeCCCCCceEc---------------------ceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccccccc
Confidence 22222 22233344 445555555666777777 6777777677655443322211
Q ss_pred -----CCcCeEEEccCCCEEEEEeCCCcEEEEEc
Q 001295 611 -----PASPRIRFNKDGCLLAVSTNDNGIKILAT 639 (1106)
Q Consensus 611 -----~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 639 (1106)
..+.+++|+++++++++++. +.+++|.+
T Consensus 289 ~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 289 GPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp CCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred CccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 01467889999999999888 88888854
No 178
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.64 E-value=1.7e-13 Score=147.55 Aligned_cols=249 Identities=14% Similarity=0.167 Sum_probs=172.6
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEE-ccCCCEE
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW-SPDGSLF 427 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~-spdg~~l 427 (1106)
+-..+.+++++++|+ ++++...++.|.+||.. ++.+.. +. .. ....+|...+.++++ .++++++
T Consensus 28 ~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~--~~---~~--------~~~~~~~~~p~~i~~~~~~g~l~ 92 (286)
T 1q7f_A 28 QFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQ--FG---EC--------GKRDSQLLYPNRVAVVRNSGDII 92 (286)
T ss_dssp CBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEE--EC---CB--------SSSTTCBSSEEEEEEETTTTEEE
T ss_pred ccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEE--ec---cc--------CCCcccccCceEEEEEcCCCeEE
Confidence 446789999999998 68888888999999987 444332 10 00 001245567899999 5777777
Q ss_pred EEEeC-CCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEe--ccCCCe
Q 001295 428 GVAYS-RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE--GHEAPV 504 (1106)
Q Consensus 428 as~~~-d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~h~~~v 504 (1106)
++... ++.|.+|| .+++.+..+ -..+...+.+++++++|+ ++++...++.|.+||. +++.+..+. ++...+
T Consensus 93 v~~~~~~~~i~~~d-~~g~~~~~~--~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p 166 (286)
T 1q7f_A 93 VTERSPTHQIQIYN-QYGQFVRKF--GATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFP 166 (286)
T ss_dssp EEECGGGCEEEEEC-TTSCEEEEE--CTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECT-TSCEEEEEECTTTCSSE
T ss_pred EEcCCCCCEEEEEC-CCCcEEEEe--cCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCc
Confidence 76643 78999999 455544421 123456789999999998 7888888899999995 566666664 345668
Q ss_pred EEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEE
Q 001295 505 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 584 (1106)
Q Consensus 505 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 584 (1106)
..+++++ ++.++++...++.|++||... .....+..... ......++++++|+.+++.
T Consensus 167 ~~i~~~~--~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~-------------------~~~p~~i~~d~~G~l~v~~ 224 (286)
T 1q7f_A 167 NGVVVND--KQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGI-------------------TNYPIGVGINSNGEILIAD 224 (286)
T ss_dssp EEEEECS--SSEEEEEEGGGTEEEEEETTC-CEEEEESCTTT-------------------SCSEEEEEECTTCCEEEEE
T ss_pred EEEEECC--CCCEEEEECCCCEEEEEcCCC-CEEEEEccCCc-------------------cCCCcEEEECCCCCEEEEe
Confidence 8888754 557888888899999999743 33333322210 0123345555556567777
Q ss_pred ECCC-eEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 585 GDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 585 ~~d~-~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
..++ .|.+|+. +++.+..+..+.....+.+++++|+|+++++ +.++.|++|+....
T Consensus 225 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 225 NHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp CSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 6775 9999995 5677777765543334668999999987777 67899999987543
No 179
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.63 E-value=1.8e-10 Score=142.96 Aligned_cols=545 Identities=10% Similarity=0.079 Sum_probs=311.1
Q ss_pred CCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEE
Q 001295 350 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 429 (1106)
Q Consensus 350 ~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 429 (1106)
...|.++...++|.. . .|+. +-+..||..+++.... . .. .......|.++...++|.+.+.
T Consensus 87 ~n~I~~i~~d~~g~l-W-igT~-~Gl~~yd~~~~~f~~~---~---~~----------~~~~~~~i~~i~~d~~g~lwi~ 147 (795)
T 4a2l_A 87 NDISRIVKTDSQGRV-W-IGTR-DGLSRYDEEKDIFQNF---F---YE----------KNGKHLQVNGIEEISPEQLLIS 147 (795)
T ss_dssp CSCEEEEEECTTSCE-E-EEES-SCEEEEETTTTEEEEE---C---CE----------ETTEECCCCEEEEEETTEEEEE
T ss_pred ccceeEEEECCCCCE-E-EEeC-CchheeCCCCCeEEec---c---cc----------ccCCCceEEEEEECCCCCEEEE
Confidence 467999999999983 3 3454 4589999876643221 0 00 0000011889998888876664
Q ss_pred EeCCCeEEEEEccCCceeeeeeeeccc-cCC-eeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEE-eccCCCeEE
Q 001295 430 AYSRHIVQIYSYHGGDEVRQHLEIDAH-VGG-VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYS 506 (1106)
Q Consensus 430 ~~~d~~v~iwd~~~~~~~~~~~~l~~h-~~~-V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~ 506 (1106)
. . +-|..||..+++... . ..++ ... |.++...+++. +.+ +..++-|..||..+++..... ..+...|.+
T Consensus 148 t-~-~gl~~~~~~~~~~~~-~--~~~~~~~~~i~~i~~d~~g~--lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~ 219 (795)
T 4a2l_A 148 T-P-EGLIMFDIKESKFID-D--SFSTAMHKTIASTLYRQGDQ--IYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQA 219 (795)
T ss_dssp E-T-TEEEEEETTTTEEEC-S--SSCHHHHTCCEEEEEEETTE--EEE-EESSSCEEEEETTTCCEEECC----CCCEEE
T ss_pred E-C-CceEEEECCCCEEEe-c--cCCCCCCcceEEEEECCCCC--EEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEE
Confidence 4 4 448899987754322 1 0011 123 88888888886 444 555555889998777643321 123456777
Q ss_pred EeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeC--------CCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCC
Q 001295 507 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--------PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 578 (1106)
Q Consensus 507 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~ 578 (1106)
+.. +.++. +..|+.++-+..||..+.... .+.. ....|.++. ..++|
T Consensus 220 i~~--d~~g~-lwigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~---------------------~d~~g 274 (795)
T 4a2l_A 220 ILQ--QSPTR-IWVATEGAGLFLINPKTKEIK-NYLHSPSNPKSISSNYIRSLA---------------------MDSQN 274 (795)
T ss_dssp EEE--EETTE-EEEEEBSSCEEEEETTTTEEE-EECCCTTCTTSCSCSBEEEEE---------------------ECTTS
T ss_pred EEE--cCCCC-EEEEECCCCeEEEeCCCCeEE-EeecCCCCccccCCCeEEEEE---------------------EcCCC
Confidence 774 33444 555555544888887653322 1211 122344444 44444
Q ss_pred CEEEEEECCCeEEEEECCCcceeEEEccC-----CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccc
Q 001295 579 NRFLAAGDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 653 (1106)
Q Consensus 579 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 653 (1106)
. +..|+.+ -|.+||..+++........ -....|.++...++|.+. +|+.++.|..|+..++. +..+..
T Consensus 275 ~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~--~~~~~~-- 347 (795)
T 4a2l_A 275 R-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNR--FKNIRN-- 347 (795)
T ss_dssp C-EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE-EEESSSCEEEECGGGGS--SEEECC--
T ss_pred C-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEECCCCeEEeCCCccc--ceEEcC--
Confidence 4 4555555 5889998877654332211 012457888888888755 56777788888754330 110000
Q ss_pred cccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccce
Q 001295 654 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR 733 (1106)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~ 733 (1106)
.. .
T Consensus 348 ----------------------------------------------------------------------~~----~--- 350 (795)
T 4a2l_A 348 ----------------------------------------------------------------------IP----Y--- 350 (795)
T ss_dssp ----------------------------------------------------------------------CT----T---
T ss_pred ----------------------------------------------------------------------CC----C---
Confidence 00 0
Q ss_pred ecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCe
Q 001295 734 SLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV 813 (1106)
Q Consensus 734 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v 813 (1106)
+.......|.++...++|. |-+++.++.+..|+.....+. .+....+.. ...-....|
T Consensus 351 ----~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~------------~~~~~~~~~-----~~~l~~~~v 408 (795)
T 4a2l_A 351 ----KNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFT------------SYTLQEDES-----ARGIGSNNI 408 (795)
T ss_dssp ----SSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEE------------EECCC-----------CCSCSCE
T ss_pred ----CCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEE------------EEecCCCCc-----ccCCCCccE
Confidence 0001235688888888887 455666666777765422110 000000000 000024679
Q ss_pred eEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeec----CCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEE
Q 001295 814 PCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 888 (1106)
Q Consensus 814 ~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~----~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~ 888 (1106)
.+++..++++.|.+|. ++.|..||..+++...... .....|.++...+ ++.+.+ |+. +-+.+||..+++...
T Consensus 409 ~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~ 485 (795)
T 4a2l_A 409 KAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWL-GTL-SALVRFNPEQRSFTT 485 (795)
T ss_dssp EEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEE-EES-SCEEEEETTTTEEEE
T ss_pred EEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEE-Eec-CceeEEeCCCCeEEE
Confidence 9999999998444555 6889999988766433221 1345689999887 666555 444 458899988776543
Q ss_pred EecC------cccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE
Q 001295 889 KLKG------HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 962 (1106)
Q Consensus 889 ~l~~------h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 962 (1106)
.... +...|.++...++|.+.+... +| |..|+..+++. ...............|.++...++|.+.+++
T Consensus 486 ~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~G-l~~~~~~~~~~---~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT 560 (795)
T 4a2l_A 486 IEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EG-LSVFKQEGLDI---QKASILPVSNVTKLFTNCIYEASNGIIWVGT 560 (795)
T ss_dssp CCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SC-EEEEEEETTEE---EECCCSCSCGGGGSCEEEEEECTTSCEEEEE
T ss_pred ccccccccccCCceEEEEEECCCCCEEEEeC-Cc-eEEEeCCCCeE---EEecCCCCCCCCCCeeEEEEECCCCCEEEEe
Confidence 2211 236789999999998777655 44 88888876432 1110000001112467888999999977765
Q ss_pred eCCeEEEEecCCceEeeecccCC-CCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCcc
Q 001295 963 HETQLAIFETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1041 (1106)
Q Consensus 963 ~d~~v~i~d~~~~~~~~~~~~~~-h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1041 (1106)
.. .+..||..+++...--...+ ....|.++...++|.+.+++ ++-|..||..+++.. .+....-++.. ...
T Consensus 561 ~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~~~~~~~~~~-~~~~~dGl~~~----~f~ 632 (795)
T 4a2l_A 561 RE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST--NRGISCFNPETEKFR-NFTESDGLQSN----QFN 632 (795)
T ss_dssp SS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEEEEETTTTEEE-EECGGGTCSCS----CEE
T ss_pred CC-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc--CCceEEEcCCCCcEE-EcCCcCCCccc----cCc
Confidence 54 78899988776543221112 24579999999999876654 345777898877643 34322222221 122
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEeecC
Q 001295 1042 PLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus 1042 ~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
.-++...+ +|.+ ..|+.+| +..++...
T Consensus 633 ~~~~~~~~-~G~l-~~g~~~G-l~~~~p~~ 659 (795)
T 4a2l_A 633 TASYCRTS-VGQM-YFGGING-ITTFRPEL 659 (795)
T ss_dssp EEEEEECT-TSCE-EEEETTE-EEEECGGG
T ss_pred cCceeECC-CCeE-EEecCCc-eEEEcHHH
Confidence 12445554 5654 4456566 55666554
No 180
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.62 E-value=3e-10 Score=140.91 Aligned_cols=545 Identities=10% Similarity=0.082 Sum_probs=316.2
Q ss_pred CCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEE
Q 001295 350 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 429 (1106)
Q Consensus 350 ~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 429 (1106)
...|+++.-.++|. +-.|+.+| +..||-. . |+.+...... . -.-....|.++...++|.+.+
T Consensus 42 ~n~v~~I~qD~~G~--lWigT~~G-L~ryDG~---~-----f~~~~~~~~~----~--~~l~~n~I~~i~~d~~g~lWi- 103 (795)
T 4a2l_A 42 QSTVFSIDQDKRGN--MWFATYDG-VNKYDGY---A-----FTVYQHNEDD----P--NSIANDISRIVKTDSQGRVWI- 103 (795)
T ss_dssp SSCEEEEEECTTSC--EEEEETTE-EEEECSS---C-----EEEECCCTTC----T--TSCSCSCEEEEEECTTSCEEE-
T ss_pred cceeEEEEEcCCCC--EEEeecCc-CcccCCC---c-----eEEEeCCCCC----C--CcccccceeEEEECCCCCEEE-
Confidence 46899999999997 44556665 5666632 2 1222110000 0 011245799999999987665
Q ss_pred EeCCCeEEEEEccCCceeeeeeeecccc----CCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEecc-CCC-
Q 001295 430 AYSRHIVQIYSYHGGDEVRQHLEIDAHV----GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH-EAP- 503 (1106)
Q Consensus 430 ~~~d~~v~iwd~~~~~~~~~~~~l~~h~----~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h-~~~- 503 (1106)
|+.+| +..||..+++... +.... ..|.++...++|. +.+.. . +-|.+||..+++......++ ...
T Consensus 104 gT~~G-l~~yd~~~~~f~~----~~~~~~~~~~~i~~i~~d~~g~--lwi~t-~-~gl~~~~~~~~~~~~~~~~~~~~~~ 174 (795)
T 4a2l_A 104 GTRDG-LSRYDEEKDIFQN----FFYEKNGKHLQVNGIEEISPEQ--LLIST-P-EGLIMFDIKESKFIDDSFSTAMHKT 174 (795)
T ss_dssp EESSC-EEEEETTTTEEEE----ECCEETTEECCCCEEEEEETTE--EEEEE-T-TEEEEEETTTTEEECSSSCHHHHTC
T ss_pred EeCCc-hheeCCCCCeEEe----ccccccCCCceEEEEEECCCCC--EEEEE-C-CceEEEECCCCEEEeccCCCCCCcc
Confidence 55555 8999988765322 22111 1288999888887 44443 3 45889997776532211111 122
Q ss_pred eEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEe-eCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEE
Q 001295 504 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 582 (1106)
Q Consensus 504 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 582 (1106)
|.++... .++. +..++.++-|..||..+....... ......|.++...+++ . +.
T Consensus 175 i~~i~~d--~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g---------------------~-lw 229 (795)
T 4a2l_A 175 IASTLYR--QGDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPT---------------------R-IW 229 (795)
T ss_dssp CEEEEEE--ETTE-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETT---------------------E-EE
T ss_pred eEEEEEC--CCCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCC---------------------C-EE
Confidence 7777643 3444 555666555888887654322110 1112234444443333 3 55
Q ss_pred EEECCCeEEEEECCCcceeEEEccC-----CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccc
Q 001295 583 AAGDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS 657 (1106)
Q Consensus 583 ~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 657 (1106)
.++.++-|.+||..+++........ -....|.++...++|.+.+ |+.+ .|.+|+..++. . ..+.....
T Consensus 230 igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~-~-~~~~~~~~--- 302 (795)
T 4a2l_A 230 VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDS-F-ASYSSNPV--- 302 (795)
T ss_dssp EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTE-E-EEECCCTT---
T ss_pred EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCe-E-EEEecCCC---
Confidence 5555555889998776554332211 0123578888888887665 4444 68888876541 1 11000000
Q ss_pred cCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceeccc
Q 001295 658 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL 737 (1106)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~ 737 (1106)
.
T Consensus 303 -------------------------------------------------------------------------~------ 303 (795)
T 4a2l_A 303 -------------------------------------------------------------------------E------ 303 (795)
T ss_dssp -------------------------------------------------------------------------S------
T ss_pred -------------------------------------------------------------------------C------
Confidence 0
Q ss_pred CccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEE
Q 001295 738 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 817 (1106)
Q Consensus 738 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~ 817 (1106)
+.......|.++...++|. +-.++.++.+..|+.....+. .+..... . ..-....|.+++
T Consensus 304 ~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~------------~~~~~~~---~----~~l~~~~V~~i~ 363 (795)
T 4a2l_A 304 NGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK------------NIRNIPY---K----NSLSDNVVSCIV 363 (795)
T ss_dssp TTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE------------EECCCTT---S----SSCSCSSEEEEE
T ss_pred CCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce------------EEcCCCC---C----CCCCCCeeEEEE
Confidence 0001345688999999988 455666666777765432110 0110000 0 001355699999
Q ss_pred EecCCCEEEEEeCCeEEEEEcCCCceeeeecC--------CCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEE
Q 001295 818 LSKNDSYVMSASGGKISLFNMMTFKTMATFMP--------PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 889 (1106)
Q Consensus 818 ~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~--------~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~ 889 (1106)
..++|.+.+...++.|..|+..+++....... ....|.+++..+ ++++|.+|+.++-|.+||..+++...-
T Consensus 364 ~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~ 442 (795)
T 4a2l_A 364 EDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENF 442 (795)
T ss_dssp ECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred ECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEe
Confidence 99998877655577899999887654332211 235689999988 777466677777799999887764332
Q ss_pred ec----CcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccC-CCCCCCCCCceEEEcCCCcEEEEEeC
Q 001295 890 LK----GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT-GRTPTAQSDTRVQFHQDQIHFLVVHE 964 (1106)
Q Consensus 890 l~----~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~~d 964 (1106)
.. .+...|.++...++|.+.+... +| |.+|+..+++... ..... ........|.++...++|+..+.+.
T Consensus 443 ~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G-l~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~- 516 (795)
T 4a2l_A 443 NQRNSQLVNENVYAILPDGEGNLWLGTL-SA-LVRFNPEQRSFTT---IEKEKDGTPVVSKQITTLFRDSHKRLWIGGE- 516 (795)
T ss_dssp CTTTSCCSCSCEEEEEECSSSCEEEEES-SC-EEEEETTTTEEEE---CCBCTTCCBCCCCCEEEEEECTTCCEEEEES-
T ss_pred ecCCCCcCCCeeEEEEECCCCCEEEEec-Cc-eeEEeCCCCeEEE---ccccccccccCCceEEEEEECCCCCEEEEeC-
Confidence 21 2346799999988888766554 55 8889987754211 11100 0011124678899999999877766
Q ss_pred CeEEEEecCCceEeeeccc-----CCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCC
Q 001295 965 TQLAIFETTKLECVKQWVP-----RESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1039 (1106)
Q Consensus 965 ~~v~i~d~~~~~~~~~~~~-----~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1106)
+.+..||..+++. . +.. ......|.++...++|.+.++. .. -|..||..+++.. .+....-++. ..
T Consensus 517 ~Gl~~~~~~~~~~-~-~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~d~~~~~~~-~~~~~~gl~~----~~ 587 (795)
T 4a2l_A 517 EGLSVFKQEGLDI-Q-KASILPVSNVTKLFTNCIYEASNGIIWVGT-RE-GFYCFNEKDKQIK-RYNTTNGLPN----NV 587 (795)
T ss_dssp SCEEEEEEETTEE-E-ECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS-CEEEEETTTTEEE-EECGGGTCSC----SC
T ss_pred CceEEEeCCCCeE-E-EecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC-CceeECCCCCcEE-EeCCCCCCch----hh
Confidence 7799999887765 2 210 1124579999999999866544 34 5788998877554 3332222332 22
Q ss_pred ccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295 1040 VHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus 1040 v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
+. ++...+ +|++.+++ ++-|..|+..+.+
T Consensus 588 i~--~i~~d~-~g~lWi~t--~~Gl~~~~~~~~~ 616 (795)
T 4a2l_A 588 VY--GILEDS-FGRLWLST--NRGISCFNPETEK 616 (795)
T ss_dssp EE--EEEECT-TSCEEEEE--TTEEEEEETTTTE
T ss_pred eE--EEEECC-CCCEEEEc--CCceEEEcCCCCc
Confidence 44 666665 56665544 4557778876654
No 181
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.61 E-value=1.3e-13 Score=153.15 Aligned_cols=220 Identities=10% Similarity=0.081 Sum_probs=152.8
Q ss_pred CeeEEEEecCCCEEEEEe-C---Ce--EEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCC------------
Q 001295 812 AVPCFALSKNDSYVMSAS-G---GK--ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD------------ 873 (1106)
Q Consensus 812 ~v~~l~~s~~~~~l~~~s-d---g~--i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~d------------ 873 (1106)
.+..++|||||++|+..+ + +. |.+|++.+++.......+ . +..++|+| |++.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECT-TSSEEEEEEECCCC---------
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECC-CCCEEEEEEccCCCcCCcEEEcc
Confidence 467899999999999886 2 33 888898887765544433 3 99999999 88888877632
Q ss_pred ---------------CcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCC-------cEEEEeCCCcccccc
Q 001295 874 ---------------SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS-------QLCVWSSDGWEKQKN 931 (1106)
Q Consensus 874 ---------------g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-------~i~vwd~~~~~~~~~ 931 (1106)
..|++||+.+++.+..+.. . .+..++|+||| ++++++.++ ...||.+++++.
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~--- 210 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE--- 210 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE---
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce---
Confidence 5799999998887555554 3 78999999999 888776542 445555544322
Q ss_pred eeecccCCCCCCCCCCceEEEcCCCcEEEE-EeC--------CeEEEEecCCceEeeecccCCCCCCeeE-EEECCCCCE
Q 001295 932 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE--------TQLAIFETTKLECVKQWVPRESSAPITH-ATFSCDSQL 1001 (1106)
Q Consensus 932 ~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d--------~~v~i~d~~~~~~~~~~~~~~h~~~v~~-l~~s~d~~~ 1001 (1106)
..+.. + . .+. .++|||++|+. +.+ ..|.+|| +++...... +|...+.. +.|+ |+ +
T Consensus 211 ~~l~~--~--~---~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~--~~~~~~~~~~~~s-dg-~ 275 (347)
T 2gop_A 211 EKMFE--K--V---SFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD--EVDRGVGQAKIKD-GK-V 275 (347)
T ss_dssp EEEEE--E--E---SEE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST--TCCSEEEEEEEET-TE-E
T ss_pred EEecc--C--c---cee--eECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccc--cCCcccCCccEEc-Cc-E
Confidence 11111 1 1 223 33999999887 433 3688888 555544332 55678886 9999 88 8
Q ss_pred EEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcE-EEEeec
Q 001295 1002 VYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGV-HVFEPL 1070 (1106)
Q Consensus 1002 l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v-~vW~~~ 1070 (1106)
+++++.++.++|| +.+++...... + ...+. .++|+| .++++++.++.. .+|.+.
T Consensus 276 ~~~~~~~~~~~l~-~~~g~~~~~~~-------~--~~~v~--~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 276 YFTLFEEGSVNLY-IWDGEIKPIAK-------G--RHWIM--GFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEEETTEEEEE-EESSSEEEEEC-------S--SSEEE--EEEESS---SEEEEEECSSSCCEEEEES
T ss_pred EEEEecCCcEEEE-EcCCceEEEec-------C--CCeEE--eeeeeC---cEEEEEcCCCChHHheEeC
Confidence 8999999999999 88666543332 1 12244 678887 577777777765 788876
No 182
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.58 E-value=5.6e-13 Score=144.18 Aligned_cols=243 Identities=10% Similarity=0.081 Sum_probs=167.4
Q ss_pred eeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCC
Q 001295 345 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 424 (1106)
Q Consensus 345 ~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 424 (1106)
....+.....+++|+|+|+.|++++..++.|..||..++ ... +..+...+.+++++|+|
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-------------------~~~~~~~~~~l~~~~dg 80 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-------------------EMHPSHHQNGHCLNKQG 80 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE-------------------EESSCSSEEEEEECTTC
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE-------------------EECCCCCcceeeECCCC
Confidence 333466788999999999977889999999999999876 221 33456689999999999
Q ss_pred CEEEEEeCCCeEEEEEccCCceeeeeeeecc-ccCCeeEEEEcCCCCceEEEE----ec-------------CCCcEEEE
Q 001295 425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVIT----CG-------------DDKTIKVW 486 (1106)
Q Consensus 425 ~~las~~~d~~v~iwd~~~~~~~~~~~~l~~-h~~~V~~~~~s~d~~~~~l~s----~~-------------~d~~i~iw 486 (1106)
+++++...++.|.+||..+++.........+ ....+..++++|+|+ ++++ |. ..+.|..+
T Consensus 81 ~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~ 158 (296)
T 3e5z_A 81 HLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRL 158 (296)
T ss_dssp CEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEE
T ss_pred cEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEE
Confidence 9888877778999999988764332111111 123578899999998 6776 33 13456666
Q ss_pred eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCce----eEeeCCCCeeEEEEEecCCCeEEE
Q 001295 487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR----VDYEAPGRWCTTMAYSADGTRTYQ 562 (1106)
Q Consensus 487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~~~~ 562 (1106)
|.. ++ +..+..+......++|++ +++.+++.+.++.|.+|++...... ..+.....
T Consensus 159 ~~~-g~-~~~~~~~~~~~~gi~~s~--dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~---------------- 218 (296)
T 3e5z_A 159 APD-GT-LSAPIRDRVKPNGLAFLP--SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPG---------------- 218 (296)
T ss_dssp CTT-SC-EEEEECCCSSEEEEEECT--TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSS----------------
T ss_pred CCC-CC-EEEeecCCCCCccEEECC--CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCC----------------
Confidence 644 44 445556667788899855 4466788888899999998732222 11111111
Q ss_pred eeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEE-ccCCCEEEEEeCCCcEEEEEccC
Q 001295 563 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF-NKDGCLLAVSTNDNGIKILATSD 641 (1106)
Q Consensus 563 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iwd~~~ 641 (1106)
....++++++|+.+++. ++.|.+||.. ++.+..+..+. . +.+++| +|+++.|++++.++ +.-++..+
T Consensus 219 -----~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~--~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 219 -----KTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQ--T-TSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp -----CCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSS--C-CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred -----CCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCC--C-ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 23345666666655555 8899999986 77777776553 2 789999 58999999988763 44445444
Q ss_pred C
Q 001295 642 G 642 (1106)
Q Consensus 642 ~ 642 (1106)
.
T Consensus 287 ~ 287 (296)
T 3e5z_A 287 R 287 (296)
T ss_dssp C
T ss_pred c
Confidence 3
No 183
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.56 E-value=6e-13 Score=146.89 Aligned_cols=283 Identities=12% Similarity=0.088 Sum_probs=186.0
Q ss_pred cceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCC
Q 001295 744 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 823 (1106)
Q Consensus 744 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~ 823 (1106)
..|.+++|++++..++..+.++.++.|.-. .... +. .+...+.+++|+++|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~-~~--~~~~~~~~~~~~~~g~ 57 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE-------------------------PWLE-IS--KKGLQLEGLNFDRQGQ 57 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE-------------------------EEEE-EE--SSCCCEEEEEECTTSC
T ss_pred cccceeeecCCccceeEEeecccCcccccc-------------------------eeEE-Ee--ccCccccCcEECCCCC
Confidence 456677888888877777677777766211 0000 11 1455678999999999
Q ss_pred EEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCC----CcEEEEEeecceEEEEec--CcccC
Q 001295 824 YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD----SSIQIYNVRVDEVKSKLK--GHSKR 896 (1106)
Q Consensus 824 ~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~d----g~v~iwd~~~~~~~~~l~--~h~~~ 896 (1106)
+++++. ++.|.+||..+++.......+...+.++++++ +++++++...+ +.|++||..+++....+. .+...
T Consensus 58 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 136 (333)
T 2dg1_A 58 LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYC 136 (333)
T ss_dssp EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCC
T ss_pred EEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCc
Confidence 777776 78999999998876655445667899999999 78888877666 689999988776543332 34567
Q ss_pred eeEEEEecCCCEEEEEcC------CCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE--eCCeEE
Q 001295 897 ITGLAFSHALNVLVSSGA------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLA 968 (1106)
Q Consensus 897 V~~l~~s~d~~~l~s~s~------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~d~~v~ 968 (1106)
+.+++++|+|+++++... .+.|..|+.++++... ..... ..+..++|+|||+.|+++ .++.|.
T Consensus 137 ~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~-------~~~~~i~~~~dg~~l~v~~~~~~~i~ 207 (333)
T 2dg1_A 137 IDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP--IIQNI-------SVANGIALSTDEKVLWVTETTANRLH 207 (333)
T ss_dssp EEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE--EEEEE-------SSEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred ccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE--eecCC-------CcccceEECCCCCEEEEEeCCCCeEE
Confidence 899999999998887764 2455556655433211 11110 135789999999876653 468999
Q ss_pred EEecCC-ceEeee-----c-ccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCcc
Q 001295 969 IFETTK-LECVKQ-----W-VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1041 (1106)
Q Consensus 969 i~d~~~-~~~~~~-----~-~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1041 (1106)
+||+.+ +..+.. . ...++ ..+..++++++|+++++...++.|.+||. +++.+..+..... ..+| ...
T Consensus 208 ~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~-~~g~---~~~ 281 (333)
T 2dg1_A 208 RIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR-DEGH---MLR 281 (333)
T ss_dssp EEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG-GGTC---SCB
T ss_pred EEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCC-cccc---ccC
Confidence 999964 322211 1 11122 46788999999998888878899999998 5666666541110 0011 012
Q ss_pred ceEEEEeCCCCCEEEEEeCCC----cEEEEeecC
Q 001295 1042 PLVIAAHPQEPNEFALGLSDG----GVHVFEPLE 1071 (1106)
Q Consensus 1042 ~~~~~~~~~d~~~l~t~~~Dg----~v~vW~~~~ 1071 (1106)
+..++|+| |++.|+.++.++ .-.||.+..
T Consensus 282 ~~~~~~~~-dg~~L~v~~~~g~~~~~~~l~~~~~ 314 (333)
T 2dg1_A 282 STHPQFIP-GTNQLIICSNDIEMGGGSMLYTVNG 314 (333)
T ss_dssp CCEEEECT-TSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred cceEEECC-CCCEEEEEeCccCCCCCceEEEEec
Confidence 34799987 566666555553 344555543
No 184
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.56 E-value=3.3e-13 Score=150.03 Aligned_cols=221 Identities=11% Similarity=0.103 Sum_probs=143.5
Q ss_pred CCcEEEEEecCCCeEEEEEe--------ccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc
Q 001295 351 SSPMSMDFHPVQQTLLLVGT--------NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 422 (1106)
Q Consensus 351 ~~v~~~~~sp~g~~llatg~--------~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 422 (1106)
..+..+++ ||++++.+.. .++.|.+||+.+++... + ..+..++|||
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~Sp 68 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISP 68 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECT
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECC
Confidence 45677788 9997555432 25679999998876432 2 4688999999
Q ss_pred CCCEEEEEeCC---C--eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecC------------------
Q 001295 423 DGSLFGVAYSR---H--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD------------------ 479 (1106)
Q Consensus 423 dg~~las~~~d---~--~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~------------------ 479 (1106)
||++||.++.+ + .|.+||+.+++... +..+.. +..++|+|||+. |+.++.
T Consensus 69 Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~~--l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 69 DGKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSRK--LLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp TSSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSSE--EEEEEECCCC---------CCCC-
T ss_pred CCCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCCE--EEEEEccCCCcCCcEEEcccceee
Confidence 99999988754 3 47888888876543 222334 999999999994 554432
Q ss_pred ---------CCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCC-------eEEEEeCCCCCceeEeeC
Q 001295 480 ---------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG-------KIKAWLYDNLGSRVDYEA 543 (1106)
Q Consensus 480 ---------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~ 543 (1106)
...|++||+.+++.+..+.. . .+..++|+ ++| +++++..++ ...+|.++ ......+..
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~ 215 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFE 215 (347)
T ss_dssp --------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEE
T ss_pred cCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC--CCe-EEEEEecccccccccccccEEEeC-CCceEEecc
Confidence 35799999998887555654 3 77788875 455 777775542 34555443 222222211
Q ss_pred CCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECC--------CeEEEEECCCcceeEEEccCCCCCCcCe
Q 001295 544 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD--------FSIKFWDMDSVQLLTSIDADGGLPASPR 615 (1106)
Q Consensus 544 ~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~v~~ 615 (1106)
+ . .+.. ++|+|++++.++.+ ..|++|| +++.......+ ...+..
T Consensus 216 ~-~---------------------~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~--~~~~~~ 267 (347)
T 2gop_A 216 K-V---------------------SFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEV--DRGVGQ 267 (347)
T ss_dssp E-E---------------------SEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTC--CSEEEE
T ss_pred C-c---------------------ceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccC--CcccCC
Confidence 1 1 1111 25566667666533 4788888 55544333322 234665
Q ss_pred -EEEccCCCEEEEEeCCCcEEEEEccC
Q 001295 616 -IRFNKDGCLLAVSTNDNGIKILATSD 641 (1106)
Q Consensus 616 -v~~s~~~~~l~~~~~dg~i~iwd~~~ 641 (1106)
+.|+ |+ ++++++.++.+++| +.+
T Consensus 268 ~~~~s-dg-~~~~~~~~~~~~l~-~~~ 291 (347)
T 2gop_A 268 AKIKD-GK-VYFTLFEEGSVNLY-IWD 291 (347)
T ss_dssp EEEET-TE-EEEEEEETTEEEEE-EES
T ss_pred ccEEc-Cc-EEEEEecCCcEEEE-EcC
Confidence 8899 88 88999999999999 863
No 185
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.56 E-value=8.9e-13 Score=144.44 Aligned_cols=238 Identities=11% Similarity=0.130 Sum_probs=172.3
Q ss_pred CCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEE
Q 001295 811 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 889 (1106)
Q Consensus 811 ~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~ 889 (1106)
.....+++. +++..++.. ++.|.+||..+++.+.++. .......+++++ +++++++...++.|.+||..+++....
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 446677774 344444444 7999999999999988885 346689999998 676655554789999999999998877
Q ss_pred ecCcc-----cCeeEEEEecCCCEEEEEc-CCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-
Q 001295 890 LKGHS-----KRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV- 962 (1106)
Q Consensus 890 l~~h~-----~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~- 962 (1106)
+.... .....+++ .+++.+++.. .++.|.+||..+++.... +.. + .....++++|+|++++++
T Consensus 121 i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~--i~~--g-----~~p~~i~~~~dG~l~v~~~ 190 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDE--LTI--G-----IQPTSLVMDKYNKMWTITD 190 (328)
T ss_dssp EECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEE--EEC--S-----SCBCCCEECTTSEEEEEBC
T ss_pred EEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEE--EEc--C-----CCccceEEcCCCCEEEEEC
Confidence 65433 14567888 4444444443 488999999998664322 111 2 234789999999987774
Q ss_pred eC----------CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccC
Q 001295 963 HE----------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLP 1032 (1106)
Q Consensus 963 ~d----------~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~ 1032 (1106)
.+ +.|.++|..+++....+.... ......++|+||+++|+++.. .|.+||..+++.... .+.+
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~----~~~~ 263 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVR----PFLE 263 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSS----CSBC
T ss_pred CCccCCccccCCceEEEEECCCCeEEEEEecCC-CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeee----eeec
Confidence 32 689999999999887765322 347899999999999988754 899999998876421 1112
Q ss_pred CCCCCCCccceEEEEeCCCCCEEEEE----eCCCcEEEEeecCCC
Q 001295 1033 AGVSSSNVHPLVIAAHPQEPNEFALG----LSDGGVHVFEPLESE 1073 (1106)
Q Consensus 1033 ~~~~~~~v~~~~~~~~~~d~~~l~t~----~~Dg~v~vW~~~~~~ 1073 (1106)
.+ .-.|..++++|++++++++. ..++.|.+|+.. ++
T Consensus 264 ~~----~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 264 FR----DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp CC----SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred CC----CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 11 13455899999777888887 778999999988 66
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.55 E-value=7.3e-13 Score=162.31 Aligned_cols=246 Identities=10% Similarity=0.001 Sum_probs=163.7
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccC----cEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCC
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 424 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 424 (1106)
|...+..++|||||++|+.+.+.+| .|++||+.+++.+.. .+.. ..+..++|||||
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~------------------~~~~--~~~~~~~wspDg 182 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD------------------VLER--VKFSCMAWTHDG 182 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE------------------EEEE--ECSCCEEECTTS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc------------------cccC--cccceEEEEeCC
Confidence 4446889999999997444444344 899999999887542 0111 136779999999
Q ss_pred CEEEEEeCCCe----------------EEEEEccCCcee-eeeeeeccccCCeeEEEEcCCCCceEEEEecC-----CCc
Q 001295 425 SLFGVAYSRHI----------------VQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-----DKT 482 (1106)
Q Consensus 425 ~~las~~~d~~----------------v~iwd~~~~~~~-~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~-----d~~ 482 (1106)
+.|+.++.++. |++|++.+++.. ..+.....|...+..+.|+|||+. |+.++. +..
T Consensus 183 ~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~~ 260 (710)
T 2xdw_A 183 KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVNR 260 (710)
T ss_dssp SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCCE
T ss_pred CEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCccE
Confidence 99999987765 999999887632 111122335666889999999995 443332 678
Q ss_pred EEEEeCCC------Cc-eeEEEeccCCCeEEEeccccCCceEEEEEec----CCeEEEEeCCCCCc--eeEeeCCCC--e
Q 001295 483 IKVWDATN------GA-KQYIFEGHEAPVYSVCPHHKENIQFIFSTAL----DGKIKAWLYDNLGS--RVDYEAPGR--W 547 (1106)
Q Consensus 483 i~iwd~~~------~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~--~~~~~~~~~--~ 547 (1106)
|++||+.+ +. ....+..+...+... |++++ ..|+..+. .+.|.+||+.+... ...+..+.. .
T Consensus 261 l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~dg--~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 337 (710)
T 2xdw_A 261 LWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTNEG--TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDV 337 (710)
T ss_dssp EEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEEET--TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE
T ss_pred EEEEECcccccccCCccceEEeeCCCCcEEEE-EeccC--CEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCe
Confidence 99999986 53 466777776666553 44443 44544443 33699999887542 123333322 3
Q ss_pred eEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCC--eEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEE
Q 001295 548 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL 625 (1106)
Q Consensus 548 v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 625 (1106)
+..++++ +++..+++...++ .|++|++.+++.+..+..+ ...+..++++|++..+
T Consensus 338 ~~~~~~~---------------------~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l 394 (710)
T 2xdw_A 338 LEWVACV---------------------RSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEI 394 (710)
T ss_dssp EEEEEEE---------------------TTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEE
T ss_pred EEEEEEE---------------------cCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEE
Confidence 4444444 3334567777777 4667787778877777655 3457788999998776
Q ss_pred EEEe----CCCcEEEEEccCC
Q 001295 626 AVST----NDNGIKILATSDG 642 (1106)
Q Consensus 626 ~~~~----~dg~i~iwd~~~~ 642 (1106)
+... ..++|+.||+.++
T Consensus 395 ~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 395 FYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp EEEEECSSCCCEEEEEETTSS
T ss_pred EEEEeCCCCCCEEEEEECCCC
Confidence 6442 2478999999877
No 187
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.55 E-value=1.5e-12 Score=140.88 Aligned_cols=238 Identities=11% Similarity=0.078 Sum_probs=167.0
Q ss_pred ccceEEEEEcCCCc-eEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295 743 ATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 821 (1106)
Q Consensus 743 ~~~i~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 821 (1106)
.....+++|+|+++ .+++...++.|..|+... + ... +.. +...+.+++++++
T Consensus 27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~----------------------~-~~~--~~~--~~~~~~~l~~~~d 79 (296)
T 3e5z_A 27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDG----------------------Q-LSP--EMH--PSHHQNGHCLNKQ 79 (296)
T ss_dssp CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTS----------------------C-EEE--EES--SCSSEEEEEECTT
T ss_pred CccccCCeEeCCCCEEEEEeCCCCEEEEEECCC----------------------C-eEE--EEC--CCCCcceeeECCC
Confidence 34567899999998 666777789999887652 2 111 111 4566899999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCceeeeecCC----CCCeeEEEEecCCCceEEE----eeC-------------CCcEEEE
Q 001295 822 DSYVMSAS-GGKISLFNMMTFKTMATFMPP----PPAATFLAFHPQDNNIIAI----GMD-------------DSSIQIY 879 (1106)
Q Consensus 822 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~----~~~v~~l~~s~~d~~~la~----g~~-------------dg~v~iw 879 (1106)
|+++++.. ++.|.+||..+++........ ...+..++++| +|+++++ |+. .+.|+.+
T Consensus 80 g~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~ 158 (296)
T 3e5z_A 80 GHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRL 158 (296)
T ss_dssp CCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEE
T ss_pred CcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEE
Confidence 99887776 589999999887754332211 23467899999 8888887 331 2345555
Q ss_pred EeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCC-Cccc-ccceeecccCCCCCCCCCCceEEEcCCCc
Q 001295 880 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD-GWEK-QKNRFLQIPTGRTPTAQSDTRVQFHQDQI 957 (1106)
Q Consensus 880 d~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~-~~~~-~~~~~~~~~~~~~~~~~~i~~~~~s~dg~ 957 (1106)
+.. ++ +..+..+.....+++|+||++.|++.+.++.|.+|++. +++. .....+ ... ...+..++++++|+
T Consensus 159 ~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~---~~~---~~~p~~i~~d~~G~ 230 (296)
T 3e5z_A 159 APD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF---TVE---PGKTDGLRVDAGGL 230 (296)
T ss_dssp CTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE---CCS---SSCCCSEEEBTTSC
T ss_pred CCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe---eCC---CCCCCeEEECCCCC
Confidence 544 44 34455666778999999999999888888999999997 3332 111222 111 13567899999999
Q ss_pred EEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEE-CCCCCEEEEEEcCCeEEEEEcCCceeE
Q 001295 958 HFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATF-SCDSQLVYACFLDATVCVFSAANLKLR 1022 (1106)
Q Consensus 958 ~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~-s~d~~~l~t~s~Dg~i~vwd~~~~~~~ 1022 (1106)
++++. ++.|.+||.. ++.+..+. .+.. +++++| +||++.|++++.++ +.-++..+.++.
T Consensus 231 l~v~~-~~~v~~~~~~-g~~~~~~~--~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~~ 290 (296)
T 3e5z_A 231 IWASA-GDGVHVLTPD-GDELGRVL--TPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGLE 290 (296)
T ss_dssp EEEEE-TTEEEEECTT-SCEEEEEE--CSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBCC
T ss_pred EEEEc-CCeEEEECCC-CCEEEEEE--CCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccccccc
Confidence 77777 8999999987 66766665 3344 999999 68999999888764 444566665443
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.55 E-value=7.3e-13 Score=140.33 Aligned_cols=253 Identities=11% Similarity=0.041 Sum_probs=185.0
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCceeeeecCCC-CCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcc-cCe
Q 001295 821 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRI 897 (1106)
Q Consensus 821 ~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~-~~V 897 (1106)
.+++|++++ ++.|.+||.++++.+.++..+. ..+.+++++| ++++|+ +.++.|+.||. +|+.+.++..+. ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 457788887 8999999999999999988766 4789999999 888888 34778999998 899998888753 578
Q ss_pred eEEEEecCCCEEEEEcC-CCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCc
Q 001295 898 TGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKL 975 (1106)
Q Consensus 898 ~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~ 975 (1106)
.++.+.+||++|++.+. ++.|..++. .++......+. .+..........+++.++|+++++. .++.|..||.+ +
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~--~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFE--TGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEEC--CSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEecc--CCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence 89999999999999887 777777775 33332221111 1100111245667889999999985 68999999998 8
Q ss_pred eEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEE
Q 001295 976 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1055 (1106)
Q Consensus 976 ~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l 1055 (1106)
+.+..+.. ...+.++.+.++|.++++++.++.|..+|..+|+.+.++.... .+ + ..-..+..+...+ +|+++
T Consensus 156 ~~~w~~~~---~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~-~~-~--~~l~~~~~~~~~~-~G~i~ 227 (276)
T 3no2_A 156 QLLNSVKL---SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAND-IE-G--VQLFFVAQLFPLQ-NGGLY 227 (276)
T ss_dssp CEEEEEEC---SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGG-SB-S--CCCSEEEEEEECT-TSCEE
T ss_pred CEEEEEEC---CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCC-CC-C--ccccccccceEcC-CCCEE
Confidence 88877763 2456778889999999999888899999999999988876211 11 1 0112344677777 68888
Q ss_pred EEEeCC--------CcEEEEee-cCCCCccCCCCCCCCCCCCC
Q 001295 1056 ALGLSD--------GGVHVFEP-LESEGKWGVPPPVDNGSTSS 1089 (1106)
Q Consensus 1056 ~t~~~D--------g~v~vW~~-~~~~~~~~~~~~~~~~~~~~ 1089 (1106)
++.... +..++.++ .+++-.|......+-|.+++
T Consensus 228 v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~ 270 (276)
T 3no2_A 228 ICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMIST 270 (276)
T ss_dssp EEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCE
T ss_pred EEeccCccccccccCCceEEEECCCCCEEEEecCcccccceee
Confidence 876421 24467777 57777788766666665554
No 189
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.54 E-value=1.2e-08 Score=126.36 Aligned_cols=606 Identities=11% Similarity=0.104 Sum_probs=322.3
Q ss_pred CCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEE
Q 001295 350 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 429 (1106)
Q Consensus 350 ~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 429 (1106)
...|+++.-..+|. |-.|+.+| +..||-.+ |+.+.... ... . ...-....|.++...++|..|-.
T Consensus 18 ~n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~--------f~~~~~~~-~~~-~--~~~l~~n~I~~i~~d~~g~~lWi 82 (781)
T 3v9f_A 18 NNYVLSITQDKQGF--LWFATEEG-LNKFDGTR--------FITYYKEE-QSS-S--VQSITGNELNEVYTDPVQPVIWI 82 (781)
T ss_dssp CSBEEEEEECTTSC--EEEEESSC-EEEECSSS--------EEEECCCS-SCS-S--SCCCSCSCEEEEEECSSSSEEEE
T ss_pred cCEeEEEEECCCCC--EEEccCCc-CccccCCc--------eEEEEcCC-CCC-c--cccccccccceEEEcCCCCEEEE
Confidence 46899999999997 44556655 66677432 12121100 000 0 00011346999999988884555
Q ss_pred EeCCCeEEEEEccCCceeeeeee-ecc---ccCCeeEEEEcC--CCCceEEEEecCCCcEEEEeCCCCceeEEEec----
Q 001295 430 AYSRHIVQIYSYHGGDEVRQHLE-IDA---HVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAKQYIFEG---- 499 (1106)
Q Consensus 430 ~~~d~~v~iwd~~~~~~~~~~~~-l~~---h~~~V~~~~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---- 499 (1106)
|+.++-+..||..+++....... ... ....|.++.... ++. +..+..++-|..+|..+++.. .+..
T Consensus 83 gt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~-~~~~~~~~ 158 (781)
T 3v9f_A 83 ATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFT-HYNKSTVP 158 (781)
T ss_dssp EESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEE-EESTTTCT
T ss_pred EeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEE-eeccCccc
Confidence 77774599999987653221000 000 123688888877 665 334443456889998776543 3321
Q ss_pred --cCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCC
Q 001295 500 --HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 577 (1106)
Q Consensus 500 --h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~ 577 (1106)
....|.++.. +.++ .|..++.++-|..||..+.... .+..... .. .......+.++...++
T Consensus 159 ~l~~~~i~~i~~--d~~g-~lwigt~~~Gl~~~~~~~~~~~-~~~~~~~----------~~---~~l~~~~i~~i~~d~~ 221 (781)
T 3v9f_A 159 ALPSEQTWTATE--AEDG-KLYIGHVEGGLSILSLNDKSVK-HFVHDPQ----------NP---NSLPGNDVRCIYKDTN 221 (781)
T ss_dssp TCSCCCEEEEEE--EETT-EEEEEETTTEEEEEETTTTEEE-EECC---------------------CCSSEEEEEECTT
T ss_pred CCCccceEEEEE--CCCC-CEEEEecCCCeEEEcCCCCceE-eeecCCC----------Cc---ccCCCCceeEEEEcCC
Confidence 1245777764 3343 4555666656888887653221 1110000 00 0000113444444555
Q ss_pred CCEEEEEECCCeEEEEECCCcceeEEEccC-----CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhccc
Q 001295 578 KNRFLAAGDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 652 (1106)
Q Consensus 578 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 652 (1106)
+. |..++.+ -|.+||..+++........ -....|.++...++|.+. +|+..+.|.+++..++ .. ..+...
T Consensus 222 g~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~-~~-~~~~~~ 296 (781)
T 3v9f_A 222 GN-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLW-IATELNGIMILDLQQN-QF-LLPEQI 296 (781)
T ss_dssp CC-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEE-EEESSSCEEEEETTCC----------
T ss_pred CC-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEE-EEeCCCCeEEECCCCC-ee-eeeecc
Confidence 54 4445555 6899998776543222111 112457888888877654 5666567888888665 21 111100
Q ss_pred ccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCc--cccCCCCccccccCCCceeeEecCCCCCCc
Q 001295 653 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV--RSLADVKPRITEESNDKSKVWKLTELSEPN 730 (1106)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~ 730 (1106)
............ .+. ...+ ........+-.|..++-+..++.....
T Consensus 297 ~f~~~~~~~~~~-~l~----------------------------~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~--- 344 (781)
T 3v9f_A 297 RFEFIREGDNNY-SLS----------------------------NASARYIFQDSFNNIWIGTWGGGINFISNAPPT--- 344 (781)
T ss_dssp -CEEECBCSSTT-SBS----------------------------SSCEEEEEECSSCCEEEEEBSSCEEEECSSCCS---
T ss_pred ccccccCCCCCC-CCC----------------------------CCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCc---
Confidence 000000000000 000 0000 001112334455555666666654321
Q ss_pred cceeccc------CccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccccc
Q 001295 731 QCRSLRL------PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 804 (1106)
Q Consensus 731 ~~~~~~~------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 804 (1106)
+..+.. ........|.++...++|. |..++.++.+..|+....... .+.. .
T Consensus 345 -~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~------------~~~~-~-------- 401 (781)
T 3v9f_A 345 -FHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAI------------YNKE-N-------- 401 (781)
T ss_dssp -CEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEE------------CC------------
T ss_pred -ceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEE------------EccC-C--------
Confidence 111110 1112346789999988887 455665555777765432111 0000 0
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeec--CCCCCeeEEEEecCCCceEEEeeCCCcEEEEEee
Q 001295 805 TDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 882 (1106)
Q Consensus 805 ~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~--~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~ 882 (1106)
.......|.+++..+++.+.+...++.|..++..+++...... .....|.++...+ ++.+.+ |+. +-|..||..
T Consensus 402 -~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~ 477 (781)
T 3v9f_A 402 -RELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDLA 477 (781)
T ss_dssp ---CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEEE-EET-TEEEEEESS
T ss_pred -CCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEEE-EEC-CceEEEeCC
Confidence 0014567899999888887664446789999987765433221 2345789998887 666554 455 458889987
Q ss_pred cceEEEEecCc-----ccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCc
Q 001295 883 VDEVKSKLKGH-----SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI 957 (1106)
Q Consensus 883 ~~~~~~~l~~h-----~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~ 957 (1106)
+++........ ...|.++...++|.+.+....+| |..|+..+.+.. ......+ .....|.++...++|.
T Consensus 478 ~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~---~~~~~~~--l~~~~i~~i~~d~~g~ 551 (781)
T 3v9f_A 478 SKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVR---KFNQYEG--FCSNTINQIYRSSKGQ 551 (781)
T ss_dssp SSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEE---EECTTTT--CSCSCEEEEEECTTSC
T ss_pred CCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEE---EccCCCC--CCCCeeEEEEECCCCC
Confidence 76543322222 46789999998888776554455 777887664321 1111111 1224678899999999
Q ss_pred EEEEEeCCeEEEEecCCceEeeecccCC-CCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCC
Q 001295 958 HFLVVHETQLAIFETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVS 1036 (1106)
Q Consensus 958 ~l~~~~d~~v~i~d~~~~~~~~~~~~~~-h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 1036 (1106)
+.+++..|-+..||..+++...--...+ ....|.++...++|.+.++ +.+| |..|+..+++.. .+....-++..
T Consensus 552 lWi~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~~~~~~~-~~~~~dGl~~~-- 626 (781)
T 3v9f_A 552 MWLATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYITSKKCFY-TYDHSNNIPQG-- 626 (781)
T ss_dssp EEEEETTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEETTTTEEE-EECGGGTCCSS--
T ss_pred EEEEECCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEECCCCceE-EecccCCcccc--
Confidence 7777664444899988765432211111 1456889999998876654 4455 777888776543 33322222221
Q ss_pred CCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecC
Q 001295 1037 SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus 1037 ~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
....-++...+ ||. |..|+.+| +..++...
T Consensus 627 --~f~~~~~~~~~-~G~-l~~g~~~G-l~~f~p~~ 656 (781)
T 3v9f_A 627 --SFISGCVTKDH-NGL-IYFGSING-LCFFNPDI 656 (781)
T ss_dssp --CEEEEEEEECT-TSC-EEEEETTE-EEEECSCC
T ss_pred --ccccCceEECC-CCE-EEEECCCc-eEEEChhh
Confidence 12222444444 565 44566677 55667554
No 190
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.53 E-value=2.5e-11 Score=131.38 Aligned_cols=281 Identities=11% Similarity=0.108 Sum_probs=191.3
Q ss_pred cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295 742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 821 (1106)
Q Consensus 742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 821 (1106)
....+.+++++++|+.+++...++.|.+|+.. +......... ....+.+++++++
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-----------------------~~~~~~~~~~--~~~~~~~i~~~~~ 67 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-----------------------GKITEYPLPT--PDAKVMCLTISSD 67 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------CCEEEEECSS--TTCCEEEEEECTT
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-----------------------CCeEEecCCc--ccCceeeEEECCC
Confidence 45678999999999977766667888888653 1111111111 3466889999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCcee-eeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEE-ecCcccCee
Q 001295 822 DSYVMSAS-GGKISLFNMMTFKTM-ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-LKGHSKRIT 898 (1106)
Q Consensus 822 ~~~l~~~s-dg~i~vwd~~~~~~~-~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~-l~~h~~~V~ 898 (1106)
|.++++.. ++.|..||.. ++.. ..+......+..+++++ +++++++...++.|.+||. +++.... +..+...+.
T Consensus 68 g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~ 144 (299)
T 2z2n_A 68 GEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPS 144 (299)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEE
T ss_pred CCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCc
Confidence 99888776 7889999986 3321 22223455789999999 7888887777889999998 5554332 333456789
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceE
Q 001295 899 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC 977 (1106)
Q Consensus 899 ~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~ 977 (1106)
++++.++|.++++...++.|..|+. +++... .... .. ...+..++++++|+++++. .++.|.+||. +++.
T Consensus 145 ~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~~---~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~ 215 (299)
T 2z2n_A 145 FITLGSDNALWFTENQNNAIGRITE-SGDITE---FKIP-TP---ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI 215 (299)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECT-TCCEEE---EECS-ST---TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred eEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---eeCC-CC---CCcceeEEECCCCCEEEEccCCceEEEECC-CCcE
Confidence 9999999998888877889999998 543221 1111 11 1256789999999977765 4789999999 6654
Q ss_pred eeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEE
Q 001295 978 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1057 (1106)
Q Consensus 978 ~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t 1057 (1106)
.. +....+...+.+++++++|+++++...++.|.+||. +++.. .+. .+.+ .. .+..+++ + ++++.++
T Consensus 216 ~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~----~~~~--~~--~~~~i~~-~-~g~l~v~ 282 (299)
T 2z2n_A 216 TE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE-EYP----IQIK--SA--EPHGICF-D-GETIWFA 282 (299)
T ss_dssp EE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE-EEE----CSSS--SC--CEEEEEE-C-SSCEEEE
T ss_pred EE-EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceE-EEe----CCCC--CC--ccceEEe-c-CCCEEEE
Confidence 33 333344678999999999997776657889999998 45433 332 1211 11 2347777 5 6777666
Q ss_pred EeCCCcEEEEeecCCC
Q 001295 1058 GLSDGGVHVFEPLESE 1073 (1106)
Q Consensus 1058 ~~~Dg~v~vW~~~~~~ 1073 (1106)
.. .+.|..++..+.+
T Consensus 283 ~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 283 ME-CDKIGKLTLIKDN 297 (299)
T ss_dssp ET-TTEEEEEEEC---
T ss_pred ec-CCcEEEEEcCccc
Confidence 55 6778888877643
No 191
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.53 E-value=9.8e-12 Score=134.92 Aligned_cols=204 Identities=11% Similarity=0.089 Sum_probs=141.6
Q ss_pred eeEEEEecCCCEEEEEe---CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec-ceEEE
Q 001295 813 VPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKS 888 (1106)
Q Consensus 813 v~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~-~~~~~ 888 (1106)
...++++|||+++.++. ++.|.++|+.+++.+.++.... . ...+ |.+.+.+++.+.||.+.+.++.+ ++...
T Consensus 139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~-P~g~~~~~~~~~DG~~~~v~~~~~g~v~~ 214 (386)
T 3sjl_D 139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIF-PTAPDTFFMHCRDGSLAKVAFGTEGTPEI 214 (386)
T ss_dssp GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEE-EEETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceee-cCCCceeEEECCCCCEEEEECCCCCeEEE
Confidence 44688999999888775 4789999999999988886432 1 2233 42566777788899998888876 55433
Q ss_pred EecCcc----cCee-EEEEe-cCCCEEEEEcCCCcEEEEeCCCcccccceeeccc------CCCCCCCCCCceEEEcCCC
Q 001295 889 KLKGHS----KRIT-GLAFS-HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP------TGRTPTAQSDTRVQFHQDQ 956 (1106)
Q Consensus 889 ~l~~h~----~~V~-~l~~s-~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~s~dg 956 (1106)
....+. ..+. ...|. ++|++++ .+.+|+|.+.|+.+........+... .+-. ......+++++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~--p~g~q~~a~~~~~ 291 (386)
T 3sjl_D 215 THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR--PGGWQQVAYHRAL 291 (386)
T ss_dssp EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE--ECSSSCEEEETTT
T ss_pred eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccccccccccc--CCCcceeeECCCC
Confidence 221121 2222 24664 6775555 56689999999976542111111100 1111 1244568889999
Q ss_pred cEEEEE-e----------CCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCC-EEEEEE-cCCeEEEEEcCCceeEE
Q 001295 957 IHFLVV-H----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRC 1023 (1106)
Q Consensus 957 ~~l~~~-~----------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~-~l~t~s-~Dg~i~vwd~~~~~~~~ 1023 (1106)
+.+.+. . .+.|.++|+.+++.++.+... ..+.+|+|++|++ +|++++ .++.|.|+|..+++.+.
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~ 368 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR 368 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEE
Confidence 988884 2 147999999999999998763 4788999999997 676655 48999999999999999
Q ss_pred eeC
Q 001295 1024 RIN 1026 (1106)
Q Consensus 1024 ~~~ 1026 (1106)
++.
T Consensus 369 ~i~ 371 (386)
T 3sjl_D 369 SVN 371 (386)
T ss_dssp EEC
T ss_pred Eec
Confidence 987
No 192
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.53 E-value=2.1e-12 Score=141.52 Aligned_cols=274 Identities=9% Similarity=0.017 Sum_probs=185.0
Q ss_pred cCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCcccc
Q 001295 713 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLW 792 (1106)
Q Consensus 713 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w 792 (1106)
..++.|.++|..+.+......... ...........+++. +++.+++...++.|.+||..
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i~~~~-n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~------------------- 72 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEVFYRA-NGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDIN------------------- 72 (328)
T ss_dssp SCCBEEEEEETTTTEEECSHHHHH-HSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETT-------------------
T ss_pred CCCceEEEEECCCCEEhhhhHhhh-cCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECc-------------------
Confidence 347889999987644322111000 001112345667774 44555555567889888765
Q ss_pred CCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCC-----CCeeEEEEecCCCce
Q 001295 793 QPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-----PAATFLAFHPQDNNI 866 (1106)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-----~~v~~l~~s~~d~~~ 866 (1106)
+++.+... . .......++++++++..++.. ++.|.+||..+++....+.... .....+++ . ++++
T Consensus 73 ---t~~~~~~i-~---~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~l 143 (328)
T 3dsm_A 73 ---TFKEVGRI-T---GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYV 143 (328)
T ss_dssp ---TCCEEEEE-E---CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEE
T ss_pred ---ccEEEEEc-C---CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEE
Confidence 33332221 1 345678999999996555553 7999999999988877665332 14567777 4 6666
Q ss_pred EEEee-CCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCC----------CcEEEEeCCCcccccceeec
Q 001295 867 IAIGM-DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD----------SQLCVWSSDGWEKQKNRFLQ 935 (1106)
Q Consensus 867 la~g~-~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D----------g~i~vwd~~~~~~~~~~~~~ 935 (1106)
+++.. .++.|.+||..+++.+..+... .....++++++|++++++..+ +.|.+||..+++... .+.
T Consensus 144 yv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~--~~~ 220 (328)
T 3dsm_A 144 YVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK--QFK 220 (328)
T ss_dssp EEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE--EEE
T ss_pred EEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE--EEe
Confidence 66654 4889999999999988877653 345789999999988777655 789999998865432 122
Q ss_pred ccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCC-CEEEEE----EcCCe
Q 001295 936 IPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS-QLVYAC----FLDAT 1010 (1106)
Q Consensus 936 ~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~-~~l~t~----s~Dg~ 1010 (1106)
...+ ..+..++|+||++.|.++.. .|.+||..+++.........+......++++|++ .+.++. ..+++
T Consensus 221 ~~~g-----~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~ 294 (328)
T 3dsm_A 221 FKLG-----DWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGI 294 (328)
T ss_dssp CCTT-----CCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEE
T ss_pred cCCC-----CCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCE
Confidence 2222 24689999999999888654 9999999988764322111224678999999954 445555 56899
Q ss_pred EEEEEcCCceeEEeeC
Q 001295 1011 VCVFSAANLKLRCRIN 1026 (1106)
Q Consensus 1011 i~vwd~~~~~~~~~~~ 1026 (1106)
|.+||.+ |+.+.++.
T Consensus 295 V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 295 VYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp EEEECTT-CCEEEEEE
T ss_pred EEEECCC-CCEEEEEE
Confidence 9999998 88888776
No 193
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.53 E-value=3.3e-12 Score=156.55 Aligned_cols=245 Identities=10% Similarity=0.051 Sum_probs=169.8
Q ss_pred cccceEEEEEcCCCceEEEeecCc-----eEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEE
Q 001295 742 RATKISRLIFTNSGNAILALASNA-----IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 816 (1106)
Q Consensus 742 ~~~~i~~~~~s~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l 816 (1106)
+...+..++|||||++|+.+..++ .|++||+. +|......+ ....+..+
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~----------------------tg~~~~~~~----~~~~~~~~ 176 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD----------------------GAKELPDVL----ERVKFSCM 176 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT----------------------TTEEEEEEE----EEECSCCE
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC----------------------CCCCCcccc----cCcccceE
Confidence 444688999999999998777643 78887765 333322111 11225679
Q ss_pred EEecCCCEEEEEe-CCe----------------EEEEEcCCCce----eeeecCCCCCeeEEEEecCCCceEEEeeC---
Q 001295 817 ALSKNDSYVMSAS-GGK----------------ISLFNMMTFKT----MATFMPPPPAATFLAFHPQDNNIIAIGMD--- 872 (1106)
Q Consensus 817 ~~s~~~~~l~~~s-dg~----------------i~vwd~~~~~~----~~~~~~~~~~v~~l~~s~~d~~~la~g~~--- 872 (1106)
+|+|||+.|+.++ ++. |++|++.++.. +.....+...+..+.||| |+++|+.++.
T Consensus 177 ~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~ 255 (710)
T 2xdw_A 177 AWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGC 255 (710)
T ss_dssp EECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSS
T ss_pred EEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccC
Confidence 9999999999887 544 99999988763 222233455678999999 8888887765
Q ss_pred --CCcEEEEEeec------ce-EEEEecCcccCeeEEEEecCCCEEEEEcCC----CcEEEEeCCCcccccceeecccCC
Q 001295 873 --DSSIQIYNVRV------DE-VKSKLKGHSKRITGLAFSHALNVLVSSGAD----SQLCVWSSDGWEKQKNRFLQIPTG 939 (1106)
Q Consensus 873 --dg~v~iwd~~~------~~-~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D----g~i~vwd~~~~~~~~~~~~~~~~~ 939 (1106)
+..|++||+.+ +. ....+..|...+.. .|++||+.|+..+.+ +.|.+|++.+++......+.. .
T Consensus 256 ~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~--~ 332 (710)
T 2xdw_A 256 DPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP--E 332 (710)
T ss_dssp SSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC--C
T ss_pred CCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccC--C
Confidence 56899999987 53 45667777776665 588999988776653 359999998764322222211 1
Q ss_pred CCCCCCCCceEEEcCCCcEEEE-EeCC--eEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEE----cCCeEE
Q 001295 940 RTPTAQSDTRVQFHQDQIHFLV-VHET--QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF----LDATVC 1012 (1106)
Q Consensus 940 ~~~~~~~i~~~~~s~dg~~l~~-~~d~--~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s----~Dg~i~ 1012 (1106)
.. ...+..++|++++.++++ ..++ .|.+|++.+++.+..+. .+...|..++++|++..|+... ..++|+
T Consensus 333 ~~--~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~--~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~ 408 (710)
T 2xdw_A 333 HE--KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFP--LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIY 408 (710)
T ss_dssp CS--SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEEC--CCSSEEEEEECCTTCSEEEEEEECSSCCCEEE
T ss_pred CC--CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecC--CCCceEEEEecCCCCCEEEEEEeCCCCCCEEE
Confidence 11 024667889877777777 4666 46778887777666655 4467789999999998766443 347899
Q ss_pred EEEcCCce
Q 001295 1013 VFSAANLK 1020 (1106)
Q Consensus 1013 vwd~~~~~ 1020 (1106)
+||+.+++
T Consensus 409 ~~d~~tg~ 416 (710)
T 2xdw_A 409 HCDLTKEE 416 (710)
T ss_dssp EEETTSSS
T ss_pred EEECCCCc
Confidence 99999887
No 194
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.52 E-value=5.3e-11 Score=131.87 Aligned_cols=203 Identities=9% Similarity=0.007 Sum_probs=140.4
Q ss_pred eEEEEecCCCEEEEEe---CCeEEEEEcCCCceeee-ecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEE
Q 001295 814 PCFALSKNDSYVMSAS---GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 889 (1106)
Q Consensus 814 ~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~-~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~ 889 (1106)
..++++|||++|++++ ++.|.++| .+++.+.. +.... ++.+.|++.+.+++.+.||.+.++|. +++....
T Consensus 128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~ 201 (373)
T 2mad_H 128 WMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA 201 (373)
T ss_pred cceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence 4688999999888875 36799999 99888877 65322 24556645567777888999999999 8776633
Q ss_pred ec-----CcccC-eeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCC----CCCCCCCCceEEEcCCCcEE
Q 001295 890 LK-----GHSKR-ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG----RTPTAQSDTRVQFHQDQIHF 959 (1106)
Q Consensus 890 l~-----~h~~~-V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~s~dg~~l 959 (1106)
.. ....+ .....+.+++..++..+.++.+.+.|+.+........+..... ..........++++||++.+
T Consensus 202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~l 281 (373)
T 2mad_H 202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI 281 (373)
T ss_pred EeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEE
Confidence 22 11122 2335677777665555578899999987643211111111110 00001223448899999988
Q ss_pred EEEe-----------CCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCC-EEEEEE-cCCeEEEEEcCCceeEEee
Q 001295 960 LVVH-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRI 1025 (1106)
Q Consensus 960 ~~~~-----------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~-~l~t~s-~Dg~i~vwd~~~~~~~~~~ 1025 (1106)
.++. .+.|.++|+.+++.+..+.. .....+++|+|||+ +|+++. .++.|.|||..+++.+.++
T Consensus 282 yV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~---g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 282 YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC---CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 7742 25799999999999998864 33689999999999 677777 4899999999999999874
No 195
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.51 E-value=3.1e-13 Score=165.05 Aligned_cols=241 Identities=13% Similarity=0.066 Sum_probs=162.1
Q ss_pred CCCCeeEEEEecCCCEEEEEe------CCeEEEEEcCCCcee-eeecCCCCCeeEEEEecCCCceEEEeeCCCc------
Q 001295 809 PEEAVPCFALSKNDSYVMSAS------GGKISLFNMMTFKTM-ATFMPPPPAATFLAFHPQDNNIIAIGMDDSS------ 875 (1106)
Q Consensus 809 ~~~~v~~l~~s~~~~~l~~~s------dg~i~vwd~~~~~~~-~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~------ 875 (1106)
|...+..++|||||++||.+. +.+|++||+.+++.+ .... .......++|+| |++.|+.++.|..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-EGGKYATPKWTP-DSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-SCCTTCCCEECT-TSSEEEEEECCCCTTSCGG
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc-CcccccceEEec-CCCEEEEEEecCCCCCccc
Confidence 455688999999999999553 257999999998865 2111 111126899999 8999998888776
Q ss_pred -------EEEEEeecce----EEEEecCcccCeeEEEEecCCCEEEEEcCCC----cEEEEeCCCcccccceeecccCCC
Q 001295 876 -------IQIYNVRVDE----VKSKLKGHSKRITGLAFSHALNVLVSSGADS----QLCVWSSDGWEKQKNRFLQIPTGR 940 (1106)
Q Consensus 876 -------v~iwd~~~~~----~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg----~i~vwd~~~~~~~~~~~~~~~~~~ 940 (1106)
|++|++.+++ ++.....|...+.++.|||||++|+.++.++ .|.+|+..+++. ..+....
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~-- 271 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF---RLLVKGV-- 271 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC---EEEEECS--
T ss_pred cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce---EEeecCC--
Confidence 9999998765 4444455667889999999999998887666 677776554321 1222111
Q ss_pred CCCCCCCceEEEcCCCcEEEE-Ee----CCeEEEEecCCceE--eeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEE
Q 001295 941 TPTAQSDTRVQFHQDQIHFLV-VH----ETQLAIFETTKLEC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV 1013 (1106)
Q Consensus 941 ~~~~~~i~~~~~s~dg~~l~~-~~----d~~v~i~d~~~~~~--~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~v 1013 (1106)
..+....+ ++|. ++. +. ++.|.+||+.++.. ...+....+...+..++|+ ++.++++...|+..+|
T Consensus 272 ----~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l 344 (695)
T 2bkl_A 272 ----GAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEV 344 (695)
T ss_dssp ----SCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred ----CceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence 13455556 6776 554 43 47899999987653 1223221224568889998 7788899999999888
Q ss_pred EEcC-CceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEE-EEe---CCCcEEEEeecCCC
Q 001295 1014 FSAA-NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA-LGL---SDGGVHVFEPLESE 1073 (1106)
Q Consensus 1014 wd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~-t~~---~Dg~v~vW~~~~~~ 1073 (1106)
|.++ +++....+. ++. ...+. .++++| |++.++ +.+ ..++|++||+.+++
T Consensus 345 ~~~~~~g~~~~~l~----~~~---~~~v~--~~~~s~-d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 345 RVATLKGKPVRTVQ----LPG---VGAAS--NLMGLE-DLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEETTCCEEEECC----CSS---SSEEC--CCBSCT-TCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEeCCCCeeEEec----CCC---CeEEE--EeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 8765 455555444 221 11133 567778 566655 332 34789999998877
No 196
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.51 E-value=5.1e-11 Score=128.96 Aligned_cols=237 Identities=9% Similarity=0.061 Sum_probs=164.2
Q ss_pred cceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCC
Q 001295 744 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 823 (1106)
Q Consensus 744 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~ 823 (1106)
..+.++++++++..+++...++.|..|+... ......+.. ....+..++++++++
T Consensus 57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-----------------------~~~~~~~~~--~~~~~~~i~~~~~g~ 111 (299)
T 2z2n_A 57 AKVMCLTISSDGEVWFTENAANKIGRITKKG-----------------------IIKEYTLPN--PDSAPYGITEGPNGD 111 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTS-----------------------CEEEEECSS--TTCCEEEEEECTTSC
T ss_pred CceeeEEECCCCCEEEeCCCCCeEEEECCCC-----------------------cEEEEeCCC--cCCCceeeEECCCCC
Confidence 4577899999998777766678888876431 111100111 345688999999998
Q ss_pred EEEEEe-CCeEEEEEcCCCceeee-ecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEE-ecCcccCeeEE
Q 001295 824 YVMSAS-GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-LKGHSKRITGL 900 (1106)
Q Consensus 824 ~l~~~s-dg~i~vwd~~~~~~~~~-~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~-l~~h~~~V~~l 900 (1106)
++++.. ++.|.+||. +++.... .......+..+++++ +++++++...++.|..||. +++.... +..+...+.++
T Consensus 112 l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i 188 (299)
T 2z2n_A 112 IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGI 188 (299)
T ss_dssp EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeE
Confidence 888776 689999998 5544322 233455789999999 7888887777889999998 6665432 33445678899
Q ss_pred EEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceEee
Q 001295 901 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVK 979 (1106)
Q Consensus 901 ~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~~~ 979 (1106)
++.++|.++++...++.|.+|+. +++... .... .. ...+..++++++|+.+++. .++.|..||. +++. .
T Consensus 189 ~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~~---~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~ 258 (299)
T 2z2n_A 189 TKGNDDALWFVEIIGNKIGRITT-SGEITE---FKIP-TP---NARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-E 258 (299)
T ss_dssp EECTTSSEEEEETTTTEEEEECT-TCCEEE---EECS-ST---TCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-E
T ss_pred EECCCCCEEEEccCCceEEEECC-CCcEEE---EECC-CC---CCCceeEEECCCCCEEEeccCCceEEEECC-CCce-E
Confidence 99999998888777889999998 544211 1111 11 1357899999999977765 6789999998 4543 3
Q ss_pred ecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCce
Q 001295 980 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1020 (1106)
Q Consensus 980 ~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~ 1020 (1106)
.+....+...+.++++ ++|.+.++.+ .+.|..++..+++
T Consensus 259 ~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 259 EYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred EEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 3433344678999999 8888777654 5677777877654
No 197
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.51 E-value=2.1e-11 Score=134.39 Aligned_cols=244 Identities=13% Similarity=0.072 Sum_probs=162.7
Q ss_pred ccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCE
Q 001295 347 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 426 (1106)
Q Consensus 347 ~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 426 (1106)
..+...+.+++|+|+|+ |++++..++.|.+||..+++.... ...+...+.+++|+|+|++
T Consensus 41 ~~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~~-------------------~~~~~~~~~~i~~~~dg~l 100 (333)
T 2dg1_A 41 SKKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIKIHKDGRL 100 (333)
T ss_dssp ESSCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEEECTTSCE
T ss_pred eccCccccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEEEE-------------------eeCCCCCcceEEECCCCcE
Confidence 34677889999999999 688888889999999988765431 1234568999999999998
Q ss_pred EEEEeCC----CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecC------CCcEEEEeCCCCceeEE
Q 001295 427 FGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQYI 496 (1106)
Q Consensus 427 las~~~d----~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~------d~~i~iwd~~~~~~~~~ 496 (1106)
+++...+ +.|.+||..++...... .-..+...+.+++++|+|+ ++++... .+.|..||..+++...
T Consensus 101 ~v~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~l~~~~~~~~~~~~- 176 (333)
T 2dg1_A 101 FVCYLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPDFRTVTP- 176 (333)
T ss_dssp EEEECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTTSCCEEE-
T ss_pred EEEeCCCCCCCceEEEEeCCCCEEEEEE-ccCccCCcccceEECCCCC--EEEEeccccccCCCceEEEEeCCCCEEEE-
Confidence 8887666 68999999887643211 1113456799999999998 5666543 3566667765555433
Q ss_pred EeccCCCeEEEeccccCCce-EEEEEecCCeEEEEeCCCC-CceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEE
Q 001295 497 FEGHEAPVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 574 (1106)
Q Consensus 497 ~~~h~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~ 574 (1106)
+..+...+..++|++ +++ ++++.+.++.|.+||+.+. .....+.. .+.....+ ......+++
T Consensus 177 ~~~~~~~~~~i~~~~--dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~------~~~~~~~~--------~~~~~~i~~ 240 (333)
T 2dg1_A 177 IIQNISVANGIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFGA------TIPYYFTG--------HEGPDSCCI 240 (333)
T ss_dssp EEEEESSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEE------EEEEECCS--------SSEEEEEEE
T ss_pred eecCCCcccceEECC--CCCEEEEEeCCCCeEEEEEecCCCcCcccccc------eEEEecCC--------CCCCCceEE
Confidence 333445577888755 445 4455566899999998642 22211100 00000000 013445677
Q ss_pred cCCCCEEEEEECCCeEEEEECCCcceeEEEccCC----CCCCcCeEEEccCCCEEEEEeCC
Q 001295 575 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTND 631 (1106)
Q Consensus 575 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~v~~v~~s~~~~~l~~~~~d 631 (1106)
+++|+.+++...++.|.+||. +++.+..+.... +...+.+++|+||++.|++++.+
T Consensus 241 d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 241 DSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp BTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 777777777778899999998 566666665332 11247899999998777766655
No 198
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.51 E-value=2.9e-12 Score=136.48 Aligned_cols=238 Identities=10% Similarity=0.047 Sum_probs=167.2
Q ss_pred CeeEEEEecCCCEEE-EEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEE
Q 001295 812 AVPCFALSKNDSYVM-SAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 889 (1106)
Q Consensus 812 ~v~~l~~s~~~~~l~-~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~ 889 (1106)
...+++++++|++++ +.. ++.|.+|+..+.........+...+.++++++ +++++++.. ++.|++||..+... ..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~-~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQ-TV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCC-EE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceE-ee
Confidence 678999999999776 434 68999999876543322223345688999999 777666655 88999999876543 33
Q ss_pred ec-CcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeE
Q 001295 890 LK-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQL 967 (1106)
Q Consensus 890 l~-~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v 967 (1106)
+. .....+.+++++++|+++++...++.|.+|+..+.... .... .. ...+..++++++|+++++. .++.|
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~----~~~~-~~---~~~p~~i~~~~~g~l~v~~~~~~~i 173 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT----VLPF-TG---LNDPDGVAVDNSGNVYVTDTDNNRV 173 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE----ECCC-CS---CCSCCCEEECTTCCEEEEEGGGTEE
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE----eecc-cc---CCCceeEEEeCCCCEEEEECCCCEE
Confidence 32 33367899999999998888888889999976543211 1111 11 1256899999999977764 56899
Q ss_pred EEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEE
Q 001295 968 AIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAA 1047 (1106)
Q Consensus 968 ~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1047 (1106)
.+||..+........ .+...+.+|+++++|.++++...++.|.+||..+..... .. ..+ .-.+..+++
T Consensus 174 ~~~~~~~~~~~~~~~--~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~-----~~~----~~~p~~i~~ 241 (270)
T 1rwi_B 174 VKLEAESNNQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP-----FTG----LNTPLAVAV 241 (270)
T ss_dssp EEECTTTCCEEECCC--SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC-----CCS----CSCEEEEEE
T ss_pred EEEecCCCceEeecc--cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec-----cCC----CCCceeEEE
Confidence 999998766544322 233678999999999777777778899999987654332 11 011 023458999
Q ss_pred eCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295 1048 HPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus 1048 ~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
++ +|+++++...++.|++++....+
T Consensus 242 ~~-~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 242 DS-DRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CT-TCCEEEEEGGGTEEEEECCCGGG
T ss_pred CC-CCCEEEEECCCCEEEEEcCCCcc
Confidence 98 68888999999999999987765
No 199
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.50 E-value=3.9e-12 Score=138.02 Aligned_cols=277 Identities=9% Similarity=0.049 Sum_probs=186.1
Q ss_pred EEcCCCceEEEeec-----CceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCE
Q 001295 750 IFTNSGNAILALAS-----NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 824 (1106)
Q Consensus 750 ~~s~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ 824 (1106)
...|+++.+++... ++.+.+.|.. +++.+.....+ ..+ . ++++|||++
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~----------------------t~~v~~~I~vG---~~P-~-va~spDG~~ 91 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGE----------------------AGRVIGMIDGG---FLP-N-PVVADDGSF 91 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETT----------------------TTEEEEEEEEC---SSC-E-EEECTTSSC
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECC----------------------CCeEEEEEECC---CCC-c-EEECCCCCE
Confidence 44688887777765 4677777654 33333222111 222 3 999999998
Q ss_pred EEEEe-----------CCeEEEEEcCCCceeeeecCCC-------CCeeEEEEecCCCceEEEeeC--CCcEEEEEeecc
Q 001295 825 VMSAS-----------GGKISLFNMMTFKTMATFMPPP-------PAATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVD 884 (1106)
Q Consensus 825 l~~~s-----------dg~i~vwd~~~~~~~~~~~~~~-------~~v~~l~~s~~d~~~la~g~~--dg~v~iwd~~~~ 884 (1106)
+++++ ++.|.+||..+++.+.++.... .....++|+| |++++.++.. ++.|.++|+.++
T Consensus 92 lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~ 170 (386)
T 3sjl_D 92 IAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGK 170 (386)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTT
T ss_pred EEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCC
Confidence 87764 4679999999999888774321 2466799999 8888877763 689999999999
Q ss_pred eEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCC-cccccceeecccCCCCCCCCCC-ceEEE-cCCCcEEEE
Q 001295 885 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSD-TRVQF-HQDQIHFLV 961 (1106)
Q Consensus 885 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~i-~~~~~-s~dg~~l~~ 961 (1106)
+.+.++..... ...+....+.+++.+.||++.+.++.+ ++..... ..... .....+ ....| .++|+++.+
T Consensus 171 ~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~-~~~~~---~~~~~~~~~~~~~~~dG~~~~v 243 (386)
T 3sjl_D 171 AFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH-TEVFH---PEDEFLINHPAYSQKAGRLVWP 243 (386)
T ss_dssp EEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE-CCCCS---CTTSCBCSCCEEETTTTEEEEE
T ss_pred cEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee-cceec---cccccccccceeEcCCCcEEEE
Confidence 99988853221 233444456777888899998888876 4431111 01111 000111 22466 478988788
Q ss_pred EeCCeEEEEecCCce--Eeeeccc--------CCCCCCeeEEEECCCCCEEEEEEc----------CCeEEEEEcCCcee
Q 001295 962 VHETQLAIFETTKLE--CVKQWVP--------RESSAPITHATFSCDSQLVYACFL----------DATVCVFSAANLKL 1021 (1106)
Q Consensus 962 ~~d~~v~i~d~~~~~--~~~~~~~--------~~h~~~v~~l~~s~d~~~l~t~s~----------Dg~i~vwd~~~~~~ 1021 (1106)
+.++.|.+.|..+.. .+..+.. .-....+..++++++++.|+.... ..+|.+.|+.+++.
T Consensus 244 s~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv 323 (386)
T 3sjl_D 244 TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 323 (386)
T ss_dssp BTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred eCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE
Confidence 888999999997653 3333320 001224456788999999888753 25799999999999
Q ss_pred EEeeCCCcccCCCCCCCCccceEEEEeCCCCC-EEEEE-eCCCcEEEEeecCCC
Q 001295 1022 RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALG-LSDGGVHVFEPLESE 1073 (1106)
Q Consensus 1022 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~-~l~t~-~~Dg~v~vW~~~~~~ 1073 (1106)
+.++. ++.. .+ .+.+++ |++ +|+++ ..++.|.++|..+++
T Consensus 324 ~~~i~----vg~~-----~~--~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 324 LAKFE----MGHE-----ID--SINVSQ-DEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp EEEEE----EEEE-----EC--EEEECS-SSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEE----CCCC-----cc--eEEECC-CCCeEEEEEcCCCCeEEEEECCCCc
Confidence 99887 2222 33 799999 565 66664 458999999999988
No 200
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.49 E-value=1.4e-12 Score=159.35 Aligned_cols=245 Identities=10% Similarity=-0.041 Sum_probs=159.6
Q ss_pred CCCCcEEEEEecCCCeEEEEEecc----CcEEEEecCCccee-EEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNV----GDIGLWEVGSRERL-VLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 423 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~d----g~i~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd 423 (1106)
|...+..++|||||++|+++.+.+ .+|++||+.+++.+ .. .+... ....++||||
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~------------------~~~~~--~~~~~~wspD 178 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD------------------VIEGG--KYATPKWTPD 178 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC------------------CBSCC--TTCCCEECTT
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc------------------ccCcc--cccceEEecC
Confidence 555789999999999755444433 57999999998754 10 01111 1267899999
Q ss_pred CCEEEEEeCCCe-------------EEEEEccCCcee-eeeeeeccccCCeeEEEEcCCCCceEEEEecCCC----cEEE
Q 001295 424 GSLFGVAYSRHI-------------VQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK----TIKV 485 (1106)
Q Consensus 424 g~~las~~~d~~-------------v~iwd~~~~~~~-~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~----~i~i 485 (1106)
|+.|+.++.|.. |++|++.++... ..+.....|...+..+.|+|||+. |+.++.++ .|++
T Consensus 179 g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~~ 256 (695)
T 2bkl_A 179 SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVYW 256 (695)
T ss_dssp SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEEE
T ss_pred CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEEE
Confidence 999999988776 999999987632 122233456678999999999995 44444343 6777
Q ss_pred EeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEe---cCCeEEEEeCCCCCc--eeEeeCC--CCeeEEEEEecCCC
Q 001295 486 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA---LDGKIKAWLYDNLGS--RVDYEAP--GRWCTTMAYSADGT 558 (1106)
Q Consensus 486 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~--~~~~~~~--~~~v~~~~~s~~~~ 558 (1106)
||..+++ ...+..+...+....+ + ++.+++... .++.|.+||+.+... ...+..+ ...+..++++
T Consensus 257 ~~~~~~~-~~~l~~~~~~~~~~~~-~--~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~---- 328 (695)
T 2bkl_A 257 KRPGEKD-FRLLVKGVGAKYEVHA-W--KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV---- 328 (695)
T ss_dssp ECTTCSS-CEEEEECSSCCEEEEE-E--TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE----
T ss_pred EcCCCCc-eEEeecCCCceEEEEe-c--CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE----
Confidence 7765554 4555556555655554 2 334444444 258999999877543 1222222 2334444444
Q ss_pred eEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECC-CcceeEEEccCCCCCCcCeEEEccCCCEEEEEeC----CCc
Q 001295 559 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD-SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN----DNG 633 (1106)
Q Consensus 559 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~ 633 (1106)
++..+++...|+..++|.+. +++....+..+. ...+..++++|+++.++.... .++
T Consensus 329 ------------------~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~ 389 (695)
T 2bkl_A 329 ------------------GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQ 389 (695)
T ss_dssp ------------------TTEEEEEEEETTEEEEEEEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEE
T ss_pred ------------------CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCE
Confidence 23357778888888888654 455555554331 235677889999987774433 468
Q ss_pred EEEEEccCC
Q 001295 634 IKILATSDG 642 (1106)
Q Consensus 634 i~iwd~~~~ 642 (1106)
|++||+.++
T Consensus 390 v~~~d~~~g 398 (695)
T 2bkl_A 390 IYKTSVSTG 398 (695)
T ss_dssp EEEEETTTC
T ss_pred EEEEECCCC
Confidence 999999876
No 201
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.48 E-value=5.5e-12 Score=134.29 Aligned_cols=239 Identities=8% Similarity=0.026 Sum_probs=161.4
Q ss_pred CcEEEEEecCCCeEEE-EEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEE
Q 001295 352 SPMSMDFHPVQQTLLL-VGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 430 (1106)
Q Consensus 352 ~v~~~~~sp~g~~lla-tg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 430 (1106)
...+++++++|+ +++ +.+.++.|.+||..++.... ....+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~-------------------~~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTV-------------------LPFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EE-------------------CCCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccce-------------------EeeCCcCCcceeEECCCCCEEEEc
Confidence 889999999998 576 54677899999976554321 012233467889999999976666
Q ss_pred eCCCeEEEEEccCCceeeeeeeec-cccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEec
Q 001295 431 YSRHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 509 (1106)
Q Consensus 431 ~~d~~v~iwd~~~~~~~~~~~~l~-~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 509 (1106)
. ++.|.+||..+..... +. .....+..++++++|. ++++...++.|.+|+..+.............+.++++
T Consensus 85 ~-~~~i~~~d~~~~~~~~----~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQTV----LPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCEE----CCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEee----eecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 8899999987654321 22 2335789999999998 7777777889999986655443322233345677776
Q ss_pred cccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCe
Q 001295 510 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 589 (1106)
Q Consensus 510 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 589 (1106)
.+ ++.++++...++.|.+||................+ ..++++++|..+++...++.
T Consensus 158 ~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p---------------------~~i~~d~~g~l~v~~~~~~~ 214 (270)
T 1rwi_B 158 DN--SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAP---------------------WGIAVDEAGTVYVTEHNTNQ 214 (270)
T ss_dssp CT--TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSE---------------------EEEEECTTCCEEEEETTTSC
T ss_pred eC--CCCEEEEECCCCEEEEEecCCCceEeecccCCCCc---------------------eEEEECCCCCEEEEECCCCc
Confidence 54 55677777778999999987543322111111223 34555555555666667889
Q ss_pred EEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 590 IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 590 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
|.+|+........ ... .+...+.+++++++|+++++...++.|++++....
T Consensus 215 v~~~~~~~~~~~~-~~~-~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 215 VVKLLAGSTTSTV-LPF-TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEEECTTCSCCEE-CCC-CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred EEEEcCCCCccee-ecc-CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 9999987654332 221 22245789999999998888888999999987654
No 202
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.46 E-value=2.6e-08 Score=123.17 Aligned_cols=509 Identities=11% Similarity=0.061 Sum_probs=284.4
Q ss_pred CCcEEEEEec--CCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295 351 SSPMSMDFHP--VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 428 (1106)
Q Consensus 351 ~~v~~~~~sp--~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 428 (1106)
..|+++.... +|. |-.|+.++.|..+|..+++.... .... ...-....|.++...++|.+.+
T Consensus 115 ~~i~~i~~d~~~~g~--lwi~t~~~gl~~~~~~~~~~~~~------~~~~--------~~~l~~~~i~~i~~d~~g~lwi 178 (781)
T 3v9f_A 115 NDVTHITSSVQAGKG--LWVCTYYRGIEYLDIATGKFTHY------NKST--------VPALPSEQTWTATEAEDGKLYI 178 (781)
T ss_dssp SCEEEEEECSSTTSE--EEEEESSSCEEEEETTTTEEEEE------STTT--------CTTCSCCCEEEEEEEETTEEEE
T ss_pred CcceEEEecCccCCC--EEEEECCCCeeEEECCCCeEEee------ccCc--------ccCCCccceEEEEECCCCCEEE
Confidence 4688998888 776 33455456788999876543221 0000 0001234688988888887665
Q ss_pred EEeCCCeEEEEEccCCceeeeeeee----ccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEec-----
Q 001295 429 VAYSRHIVQIYSYHGGDEVRQHLEI----DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG----- 499 (1106)
Q Consensus 429 s~~~d~~v~iwd~~~~~~~~~~~~l----~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----- 499 (1106)
++.++-|..||..+++........ .-....|.++...++|. +.+. ..+ -+.+||..+++.......
T Consensus 179 -gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~--lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~~~ 253 (781)
T 3v9f_A 179 -GHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGN--IWIG-TSK-GLALFNANTETFTNFHNNPGNIH 253 (781)
T ss_dssp -EETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCC--EEEE-ETT-EEEEEETTTTEEEC---------
T ss_pred -EecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCC--EEEE-eCC-cHheECCCCCcEEEEEcCCCccc
Confidence 555545889998876532210000 00135689999988887 4443 334 688999877654322111
Q ss_pred --cCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCC
Q 001295 500 --HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 577 (1106)
Q Consensus 500 --h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~ 577 (1106)
....|.++.. +.+| .|..|+..+-|.++|..+......... ....+. .+... .+.....+.++..+.+
T Consensus 254 ~l~~~~i~~i~~--d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~---~f~~~~-~~~~~---~~l~~~~v~~i~~D~~ 323 (781)
T 3v9f_A 254 GALSSYIFSIKQ--LKDN-KLWIATELNGIMILDLQQNQFLLPEQI---RFEFIR-EGDNN---YSLSNASARYIFQDSF 323 (781)
T ss_dssp --CCCCEEEEEE--CTTS-EEEEEESSSCEEEEETTCC------------CEEEC-BCSST---TSBSSSCEEEEEECSS
T ss_pred cccCceEEEEEE--CCCC-CEEEEeCCCCeEEECCCCCeeeeeecc---cccccc-CCCCC---CCCCCCeEEEEEEeCC
Confidence 2356888874 4454 466666645678888765432111000 000000 00000 0011123444555555
Q ss_pred CCEEEEEECCCeEEEEECCCcceeEEEc-------cCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhc
Q 001295 578 KNRFLAAGDDFSIKFWDMDSVQLLTSID-------ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 650 (1106)
Q Consensus 578 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 650 (1106)
|. +-.|+.++-|..|+..++....... ..-....|.++...++|.+. +|+.++.|..|+..++. ...+.
T Consensus 324 g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~--~~~~~ 399 (781)
T 3v9f_A 324 NN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRV--AIYNK 399 (781)
T ss_dssp CC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEE--EECC-
T ss_pred CC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCe--EEEcc
Confidence 54 5667767778889887654333211 00112357788888777655 56666678888865431 00000
Q ss_pred ccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCc
Q 001295 651 NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPN 730 (1106)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~ 730 (1106)
.
T Consensus 400 ~------------------------------------------------------------------------------- 400 (781)
T 3v9f_A 400 E------------------------------------------------------------------------------- 400 (781)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred cceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCC
Q 001295 731 QCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE 810 (1106)
Q Consensus 731 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 810 (1106)
+.......|.++...+++... +++.++.+..++..+ +........ ....
T Consensus 401 -------~~~~~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~----------------------~~~~~~~~~-~~~~ 449 (781)
T 3v9f_A 401 -------NRELLSNSVLCSLKDSEGNLW-FGTYLGNISYYNTRL----------------------KKFQIIELE-KNEL 449 (781)
T ss_dssp ----------CCCSBEEEEEECTTSCEE-EEETTEEEEEECSSS----------------------CEEEECCST-TTCC
T ss_pred -------CCCCCCcceEEEEECCCCCEE-EEeccCCEEEEcCCC----------------------CcEEEeccC-CCCC
Confidence 000123567888888888744 456555666665432 211111000 0135
Q ss_pred CCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCC-----CCCeeEEEEecCCCceEEEeeCCCcEEEEEeecce
Q 001295 811 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP-----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 885 (1106)
Q Consensus 811 ~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~-----~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~ 885 (1106)
..|.++...+++.+.+... +.|..||..+++........ ...|.+++..+ ++++.+ |+.++-|..||..+++
T Consensus 450 ~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~ 526 (781)
T 3v9f_A 450 LDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWI-GTFGGGVGIYTPDMQL 526 (781)
T ss_dssp CCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT-TCCEEE-EESSSCEEEECTTCCE
T ss_pred CeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcC-CCCEEE-EEcCCCEEEEeCCCCe
Confidence 6789999988887665544 67999998876554332212 35689999888 666555 5554457788877665
Q ss_pred EEEEec-C---cccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE
Q 001295 886 VKSKLK-G---HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 961 (1106)
Q Consensus 886 ~~~~l~-~---h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 961 (1106)
.. .+. . ....|.++...++|.+.++.. +|.|..||..+++. .......+-. ...+.++...++|.+.++
T Consensus 527 ~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~---~~~~~~~gl~--~~~i~~i~~d~~g~lW~~ 599 (781)
T 3v9f_A 527 VR-KFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDY---QVFQRKEGLP--NTHIRAISEDKNGNIWAS 599 (781)
T ss_dssp EE-EECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCC---EEECGGGTCS--CCCCCEEEECSSSCEEEE
T ss_pred EE-EccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcE---EEccccCCCC--CceEEEEEECCCCCEEEE
Confidence 43 332 1 245789999988988776655 77548888776432 1222222222 246788999999987776
Q ss_pred EeCCeEEEEecCCceEeeecccCCC-CC--CeeEEEECCCCCEEEEEEcCCeEEEEEcC
Q 001295 962 VHETQLAIFETTKLECVKQWVPRES-SA--PITHATFSCDSQLVYACFLDATVCVFSAA 1017 (1106)
Q Consensus 962 ~~d~~v~i~d~~~~~~~~~~~~~~h-~~--~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~ 1017 (1106)
+. +.|..|+..+.+...--...+- .. ...++...++|++++ |+.+|.+ .++..
T Consensus 600 t~-~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~Gl~-~f~p~ 655 (781)
T 3v9f_A 600 TN-TGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYF-GSINGLC-FFNPD 655 (781)
T ss_dssp CS-SCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEE-EETTEEE-EECSC
T ss_pred cC-CceEEEECCCCceEEecccCCccccccccCceEECCCCEEEE-ECCCceE-EEChh
Confidence 54 4578888876654332111121 12 235677788887666 5567744 45654
No 203
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.46 E-value=8.6e-11 Score=130.15 Aligned_cols=237 Identities=11% Similarity=0.030 Sum_probs=162.1
Q ss_pred EEEEecCCCEEEEEe-----------CCeEEEEEcCCCceeeeecCC-------CCCeeEEEEecCCCceEEEeeC--CC
Q 001295 815 CFALSKNDSYVMSAS-----------GGKISLFNMMTFKTMATFMPP-------PPAATFLAFHPQDNNIIAIGMD--DS 874 (1106)
Q Consensus 815 ~l~~s~~~~~l~~~s-----------dg~i~vwd~~~~~~~~~~~~~-------~~~v~~l~~s~~d~~~la~g~~--dg 874 (1106)
.++++|||++++++. ++.|.+||..+.+.+.++... ......++|+| |+++|+++.. ++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGP 148 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCC
Confidence 899999999998874 467999999998887766432 12345899999 8888888764 57
Q ss_pred cEEEEEeecceEEEE-ecCcccCeeEEEEecCC-CEEEEEcCCCcEEEEeCCCcccccceee-cccCCCCCCCCCCceEE
Q 001295 875 SIQIYNVRVDEVKSK-LKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFL-QIPTGRTPTAQSDTRVQ 951 (1106)
Q Consensus 875 ~v~iwd~~~~~~~~~-l~~h~~~V~~l~~s~d~-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~ 951 (1106)
.|.++| .+++.+.. +.... ++.+.|++ +.+++.+.||.+.+++. +++....... ....+.. .......
T Consensus 149 ~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~---p~~~~~~ 219 (373)
T 2mad_H 149 AVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQ---NLLTQPA 219 (373)
T ss_pred eEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCc---ceeecce
Confidence 899999 99998877 54322 24555665 45667788999999999 6554311000 0001110 0112345
Q ss_pred EcCCCcE-EEEEeCCeEEEEecCCce--EeeecccCC--------CCCCeeEEEECCCCCEEEEEEc----------CCe
Q 001295 952 FHQDQIH-FLVVHETQLAIFETTKLE--CVKQWVPRE--------SSAPITHATFSCDSQLVYACFL----------DAT 1010 (1106)
Q Consensus 952 ~s~dg~~-l~~~~d~~v~i~d~~~~~--~~~~~~~~~--------h~~~v~~l~~s~d~~~l~t~s~----------Dg~ 1010 (1106)
+.+++.. ++++..+.+.+.|+.+.. .+..+.... .......++++||++.|+++.. .+.
T Consensus 220 ~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~ 299 (373)
T 2mad_H 220 QANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE 299 (373)
T ss_pred eEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCe
Confidence 6666554 444677889999987552 223332100 1223445889999998887654 357
Q ss_pred EEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCC-EEEEEe-CCCcEEEEeecCCC
Q 001295 1011 VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPLESE 1073 (1106)
Q Consensus 1011 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~-~l~t~~-~Dg~v~vW~~~~~~ 1073 (1106)
|.++|..+++.+.++. .+. .+..+.|+| ||+ +++++. .++.|.+||+.+++
T Consensus 300 V~VID~~t~~vv~~i~----~g~-------~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 300 VTSVTGLVGQTSSQIS----LGH-------DVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred EEEEECCCCEEEEEEE----CCC-------CcCeEEECC-CCCeEEEEEcCCCCeEEEEECCCCC
Confidence 9999999999998886 221 233799999 677 777777 58999999999988
No 204
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.44 E-value=1e-11 Score=131.50 Aligned_cols=212 Identities=13% Similarity=0.092 Sum_probs=156.7
Q ss_pred EEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCC-cCeEEEEEccCCCEEEEEeCCCeEEEEEccC
Q 001295 365 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG 443 (1106)
Q Consensus 365 llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~las~~~d~~v~iwd~~~ 443 (1106)
+|++++.++.|.+||.++|+.+.+ +..+. ..+.+++++|+|++|+ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 699999999999999999998764 23333 4688999999999998 34778999999 7
Q ss_pred Cceeeeeeeeccc-cCCeeEEEEcCCCCceEEEEecC-CCcEEEEeCCCCceeEEEec------cCCCeEEEeccccCCc
Q 001295 444 GDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEG------HEAPVYSVCPHHKENI 515 (1106)
Q Consensus 444 ~~~~~~~~~l~~h-~~~V~~~~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~------h~~~v~~~~~~~~~~~ 515 (1106)
|+.+.. +..+ ...+.++.+.+||+ ++++.+. ++.|..+|. +|+.+..+.. +......++ ...+|
T Consensus 65 G~~~W~---~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~--~~~~G 136 (276)
T 3no2_A 65 GRELWN---IAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQIN--KNKKG 136 (276)
T ss_dssp SCEEEE---EECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCE--ECTTS
T ss_pred CCEEEE---EcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCce--ECCCC
Confidence 776654 3333 34688999999999 6777766 778888884 7888777652 112233333 35677
Q ss_pred eEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEEC
Q 001295 516 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM 595 (1106)
Q Consensus 516 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 595 (1106)
+++++...++.|.+||.. ++.+..+.... ...+ +...++++.++++..++.|..+|.
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~---------------------~~~~~~g~~~v~~~~~~~v~~~d~ 193 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFS---------------------SAFLDNGDCLVACGDAHCFVQLNL 193 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEEECSS-CCCE---------------------EEECTTSCEEEECBTTSEEEEECT
T ss_pred CEEEEecCCCEEEEECCC-CCEEEEEECCC-Cccc---------------------eeEcCCCCEEEEeCCCCeEEEEeC
Confidence 899999999999999987 77776665542 2222 334455567888888889999999
Q ss_pred CCcceeEEEccCC----CCCCcCeEEEccCCCEEEEEe
Q 001295 596 DSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVST 629 (1106)
Q Consensus 596 ~~~~~~~~~~~~~----~~~~v~~v~~s~~~~~l~~~~ 629 (1106)
.+|+.+..+.... ....+..++..++|.++++.+
T Consensus 194 ~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 194 ESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp TTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred cCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 9999998886321 123366788889999998875
No 205
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.42 E-value=3.9e-11 Score=133.01 Aligned_cols=205 Identities=12% Similarity=0.082 Sum_probs=142.5
Q ss_pred eEEEEecCCCEEEEEe---CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEE-
Q 001295 814 PCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK- 889 (1106)
Q Consensus 814 ~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~- 889 (1106)
..++++|||++++++. ++.|.+.|+.+++.+.++.... +....|++.+.+++.+.||.+.+.+..+++....
T Consensus 180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~ 255 (426)
T 3c75_H 180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTN 255 (426)
T ss_dssp GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence 4578889999888875 3789999999999888876422 1334453446666677788888888866655432
Q ss_pred ---ecCcccCe-eEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCC----CCCCCCceEEEcCCCcEEEE
Q 001295 890 ---LKGHSKRI-TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT----PTAQSDTRVQFHQDQIHFLV 961 (1106)
Q Consensus 890 ---l~~h~~~V-~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~s~dg~~l~~ 961 (1106)
+.....++ ..+.|++++..++..+..+.|.+.|+.+................ ........++++||++.+.+
T Consensus 256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyV 335 (426)
T 3c75_H 256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYL 335 (426)
T ss_dssp CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEE
T ss_pred eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEE
Confidence 22112222 24578999988888888899999998654321111111100000 00012345899999988777
Q ss_pred Ee-----------CCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCC-EEEEEE-cCCeEEEEEcCCceeEEee
Q 001295 962 VH-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRI 1025 (1106)
Q Consensus 962 ~~-----------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~-~l~t~s-~Dg~i~vwd~~~~~~~~~~ 1025 (1106)
.. .+.|.++|..+.+.+..+... .....|+|+|||+ +|+++. .++.|.|+|..+++.+.++
T Consensus 336 a~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg---~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 336 LVDQRDEWKHKAASRFVVVLNAETGERINKIELG---HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EecccccccccCCCCEEEEEECCCCeEEEEEECC---CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 42 247999999999999998753 3589999999999 888888 5899999999999999887
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.38 E-value=9.6e-10 Score=118.85 Aligned_cols=278 Identities=9% Similarity=0.051 Sum_probs=187.4
Q ss_pred cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295 742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 821 (1106)
Q Consensus 742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 821 (1106)
....+.+++++++|+.+++...++.|.+|+.. . ......+.. ....+.+++++++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~----------------------~~~~~~~~~--~~~~~~~i~~~~~ 72 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-G----------------------RIKEFEVPT--PDAKVMCLIVSSL 72 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S----------------------CEEEEECSS--TTCCEEEEEECTT
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-C----------------------ceEEEECCC--CCCcceeEEECCC
Confidence 34578899999999977776677888888653 1 111111111 3456889999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCceee-eecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEE-EecCcccCee
Q 001295 822 DSYVMSAS-GGKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-KLKGHSKRIT 898 (1106)
Q Consensus 822 ~~~l~~~s-dg~i~vwd~~~~~~~~-~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~-~l~~h~~~V~ 898 (1106)
++++++.. ++.|..||.. ++... .+......+..+++.+ +++++++...++.|..||.. ++... .+......+.
T Consensus 73 g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~ 149 (300)
T 2qc5_A 73 GDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPA 149 (300)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE
T ss_pred CCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCce
Confidence 99877776 6889999988 55432 2232346789999998 78888877778899999987 55442 2333456789
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceE
Q 001295 899 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC 977 (1106)
Q Consensus 899 ~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~ 977 (1106)
++++.++|+++++...++.|..|+. +++... .... .. ...+..++++++|.++++. ..+.|.+||. +++.
T Consensus 150 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~~---~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~ 220 (300)
T 2qc5_A 150 FITLGSDNALWFTENQNNSIGRITN-TGKLEE---YPLP-TN---AAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEI 220 (300)
T ss_dssp EEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EECS-ST---TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred eEEECCCCCEEEEecCCCeEEEECC-CCcEEE---eeCC-CC---CCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcE
Confidence 9999999998887777888999998 433211 1111 11 1356889999999877775 4568999998 4544
Q ss_pred eeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEE
Q 001295 978 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1057 (1106)
Q Consensus 978 ~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t 1057 (1106)
... ....+...+.+++++++|++.++...++.|..||. +++.. .+. .+.+ .. .+.++++.+ +|+++++
T Consensus 221 ~~~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~----~~~~--~~--~~~~i~~~~-~g~l~v~ 288 (300)
T 2qc5_A 221 SEY-DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQ----LQTE--NA--EPHGITFGK-DGSVWFA 288 (300)
T ss_dssp EEE-ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEE----CCST--TC--CCCCEEECT-TSCEEEE
T ss_pred EEE-ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEE----CCcc--CC--ccceeEeCC-CCCEEEE
Confidence 332 22234567899999999997776666789999998 45443 222 1211 11 233688888 5776665
Q ss_pred EeCCCcEEEEeec
Q 001295 1058 GLSDGGVHVFEPL 1070 (1106)
Q Consensus 1058 ~~~Dg~v~vW~~~ 1070 (1106)
.. . .|..++..
T Consensus 289 ~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 289 LK-C-KIGKLNLN 299 (300)
T ss_dssp CS-S-EEEEEEEC
T ss_pred cc-C-ceEEeCCC
Confidence 54 4 66666653
No 207
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.37 E-value=1.7e-10 Score=125.75 Aligned_cols=256 Identities=13% Similarity=0.105 Sum_probs=161.5
Q ss_pred cCCCCcEEEEEecCCCeEEEE-------EeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEE
Q 001295 348 NQGSSPMSMDFHPVQQTLLLV-------GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 420 (1106)
Q Consensus 348 ~h~~~v~~~~~sp~g~~llat-------g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 420 (1106)
..-....+++|+++|+ ++++ +..++.|.+||..+++.... . . ....++...+.++++
T Consensus 15 ~~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~---~---~---------~~~~~~~~~~~~i~~ 78 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI---C---K---------PEVNGYGGIPAGCQC 78 (314)
T ss_dssp CCCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE---E---C---------CEETTEECCEEEEEE
T ss_pred ccCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE---E---e---------cccCCCCCCCceEEE
Confidence 3445778999999998 5766 56788999999888765321 0 0 001234467999999
Q ss_pred ccC-CCEEEEEeCCCeEEEEEccCCceeee-eeeecc-ccCCeeEEEEcCCCCceEEEEecCC---------------Cc
Q 001295 421 SPD-GSLFGVAYSRHIVQIYSYHGGDEVRQ-HLEIDA-HVGGVNDIAFSHPNKQLCVITCGDD---------------KT 482 (1106)
Q Consensus 421 spd-g~~las~~~d~~v~iwd~~~~~~~~~-~~~l~~-h~~~V~~~~~s~d~~~~~l~s~~~d---------------~~ 482 (1106)
+++ |+++++.. .+.|.+||.. ++.... .....+ +...+.+++++++|+ ++++...+ +.
T Consensus 79 ~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~ 154 (314)
T 1pjx_A 79 DRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGS 154 (314)
T ss_dssp CSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEE
T ss_pred ecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCe
Confidence 999 76555544 4479999998 654321 111111 224589999999998 56666544 56
Q ss_pred EEEEeCCCCceeEEEeccCCCeEEEecc--ccCCceEE-EEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCe
Q 001295 483 IKVWDATNGAKQYIFEGHEAPVYSVCPH--HKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 559 (1106)
Q Consensus 483 i~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 559 (1106)
|..||.. ++.... ..+......++++ .+++++.+ ++...++.|.+||+......... ..+.-.+..
T Consensus 155 l~~~~~~-g~~~~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~-------~~~~~~~~~-- 223 (314)
T 1pjx_A 155 IYCFTTD-GQMIQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK-------KVWGHIPGT-- 223 (314)
T ss_dssp EEEECTT-SCEEEE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE-------EEEEECCCC--
T ss_pred EEEECCC-CCEEEe-ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccc-------eEEEECCCC--
Confidence 7777765 554333 3344456777775 11555555 44456899999987521111000 000000000
Q ss_pred EEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEE-eCCCcEEEEE
Q 001295 560 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKILA 638 (1106)
Q Consensus 560 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iwd 638 (1106)
.......++++++|+.+++...++.|.+||..+++.+..+..+. ..+.+++|+++++.|+++ ..++.|..|+
T Consensus 224 -----~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~i~~~~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 224 -----HEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp -----SSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred -----CCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCC--CCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence 00123446677777777777788999999998788777776442 368899999999955544 5568899998
Q ss_pred ccC
Q 001295 639 TSD 641 (1106)
Q Consensus 639 ~~~ 641 (1106)
+..
T Consensus 297 ~~~ 299 (314)
T 1pjx_A 297 WQR 299 (314)
T ss_dssp CSS
T ss_pred CCC
Confidence 764
No 208
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.37 E-value=3.3e-11 Score=148.16 Aligned_cols=281 Identities=11% Similarity=0.048 Sum_probs=171.9
Q ss_pred CCCCccccccCCC---ceeeEecCCCC-CCccceec-ccC--ccccccceEEEEEcCCCceEEEeecC-----ceEEEee
Q 001295 704 ADVKPRITEESND---KSKVWKLTELS-EPNQCRSL-RLP--ENLRATKISRLIFTNSGNAILALASN-----AIHLLWK 771 (1106)
Q Consensus 704 ~~~~~l~~~~~d~---~i~vw~~~~~~-~~~~~~~~-~~~--~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iw~ 771 (1106)
+++.+++....++ ...+|...... .....+.+ ... ..++...+..++|||||++|+.+..+ ..|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 6677666554443 35667665320 00111111 100 12233468899999999999887764 3577776
Q ss_pred ccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CC--------------eEEEE
Q 001295 772 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GG--------------KISLF 836 (1106)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg--------------~i~vw 836 (1106)
+. +|..+.... +...+..++|+|| +.|+.++ ++ .|++|
T Consensus 196 l~----------------------tg~~~~~~~----~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~ 248 (741)
T 1yr2_A 196 VA----------------------DGKPLADEL----KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLH 248 (741)
T ss_dssp TT----------------------TCCEEEEEE----EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEE
T ss_pred CC----------------------CCCCCCccC----CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEE
Confidence 65 343322111 1112357899999 9888876 43 38999
Q ss_pred EcCCCce----eeeecCCCCCeeEEEEecCCCceEEEeeCCC-----cEEEEEeecc--eEEEEecCcccCeeEEEEecC
Q 001295 837 NMMTFKT----MATFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVD--EVKSKLKGHSKRITGLAFSHA 905 (1106)
Q Consensus 837 d~~~~~~----~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg-----~v~iwd~~~~--~~~~~l~~h~~~V~~l~~s~d 905 (1106)
++.++.. +.....+...+..+.||| ||++|+..+.++ .|++||+.++ ++...+..+...+.... +|+
T Consensus 249 ~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~d 326 (741)
T 1yr2_A 249 RLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGV 326 (741)
T ss_dssp ETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEE
T ss_pred ECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-ecc
Confidence 9977652 222223334588999999 898888777554 8999999887 31456666666665554 589
Q ss_pred CCEEEEEcCC----CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecC-CceEee
Q 001295 906 LNVLVSSGAD----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT-KLECVK 979 (1106)
Q Consensus 906 ~~~l~s~s~D----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~-~~~~~~ 979 (1106)
|+.|+..+.+ +.|.+|++.++. .. ......++. ..+..+.++ ++.++++ ..++..++|.+. ++....
T Consensus 327 g~~l~~~s~~~~~~~~l~~~d~~~~~-~~--~~~l~~~~~---~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~ 399 (741)
T 1yr2_A 327 GDQLWFVSGDGAPLKKIVRVDLSGST-PR--FDTVVPESK---DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAG 399 (741)
T ss_dssp TTEEEEEECTTCTTCEEEEEECSSSS-CE--EEEEECCCS---SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEE
T ss_pred CCEEEEEECCCCCCCEEEEEeCCCCc-cc--cEEEecCCC---CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCcee
Confidence 9988887764 449999988743 11 112222221 234566776 4455555 577776666443 355555
Q ss_pred ecccCCCCCCeeEEEECCCCCEEEEEE----cCCeEEEEEcCCcee
Q 001295 980 QWVPRESSAPITHATFSCDSQLVYACF----LDATVCVFSAANLKL 1021 (1106)
Q Consensus 980 ~~~~~~h~~~v~~l~~s~d~~~l~t~s----~Dg~i~vwd~~~~~~ 1021 (1106)
.+.. .+...|..++++||++.|+... ..++|++||+.+++.
T Consensus 400 ~l~~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 400 AVSL-PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp ECBC-SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred eccC-CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 5442 2356789999999998766332 347899999998874
No 209
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.37 E-value=1.8e-11 Score=150.61 Aligned_cols=245 Identities=9% Similarity=-0.017 Sum_probs=153.5
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccC----cEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCC
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 424 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 424 (1106)
|...+..++|||||++|+++.+.+| .|++||+.+++.+.. . .+...+..++||||
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~-------------------~~~~~~~~~~wspD- 219 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-E-------------------LKWVKFSGLAWLGN- 219 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-E-------------------EEEEESCCCEESTT-
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-c-------------------CCCceeccEEEECC-
Confidence 3346889999999997444444334 599999999987542 0 01112357899999
Q ss_pred CEEEEEeCCCe--------------EEEEEccCCcee-eeeeeeccccCCeeEEEEcCCCCceEEEEecC-----CCcEE
Q 001295 425 SLFGVAYSRHI--------------VQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-----DKTIK 484 (1106)
Q Consensus 425 ~~las~~~d~~--------------v~iwd~~~~~~~-~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~-----d~~i~ 484 (1106)
+.|+.++.++. |++|++.++... ..+.....|...+..+.|+|||+. |+..+. ...|+
T Consensus 220 ~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~l~ 297 (741)
T 1yr2_A 220 DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNTVH 297 (741)
T ss_dssp SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCEEE
T ss_pred CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcceEE
Confidence 99998876654 899999876532 112222334446899999999995 444433 34899
Q ss_pred EEeCCCC--ceeEEEeccCCCeEEEeccccCCceEEEEEec----CCeEEEEeCCCCC-ceeE-eeCCCCeeEEEEEecC
Q 001295 485 VWDATNG--AKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL----DGKIKAWLYDNLG-SRVD-YEAPGRWCTTMAYSAD 556 (1106)
Q Consensus 485 iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~-~~~~-~~~~~~~v~~~~~s~~ 556 (1106)
+||+.++ ++...+..+...+....+ + ++..|+..+. ++.|.+||+.+.. .... +..+...+..+.+.
T Consensus 298 ~~d~~~~~~~~~~~l~~~~~~~~~~~~-~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-- 372 (741)
T 1yr2_A 298 VARVTNGKIGPVTALIPDLKAQWDFVD-G--VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-- 372 (741)
T ss_dssp EEEEETTEECCCEEEECSSSSCEEEEE-E--ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--
T ss_pred EEECCCCCCcccEEecCCCCceEEEEe-c--cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--
Confidence 9999887 425566656555554432 3 3456666654 4569999987642 2222 22222233333333
Q ss_pred CCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECC-CcceeEEEccCCCCCCcCeEEEccCCCEEEEEe----CC
Q 001295 557 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD-SVQLLTSIDADGGLPASPRIRFNKDGCLLAVST----ND 631 (1106)
Q Consensus 557 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~----~d 631 (1106)
++..+++...|+..++|.+. +++....+..+. ...+..++++|+++.++... ..
T Consensus 373 --------------------~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P 431 (741)
T 1yr2_A 373 --------------------GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQP 431 (741)
T ss_dssp --------------------BTEEEEEEEETTEEEEEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEE
T ss_pred --------------------CCEEEEEEEECCEEEEEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCC
Confidence 22356777788887777554 455566665322 23577889999987666332 24
Q ss_pred CcEEEEEccCC
Q 001295 632 NGIKILATSDG 642 (1106)
Q Consensus 632 g~i~iwd~~~~ 642 (1106)
++|++||+.++
T Consensus 432 ~~i~~~d~~tg 442 (741)
T 1yr2_A 432 ATVLALDPATA 442 (741)
T ss_dssp EEEEEEETTTT
T ss_pred CEEEEEECCCC
Confidence 78999999876
No 210
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.36 E-value=2.5e-09 Score=115.57 Aligned_cols=238 Identities=11% Similarity=-0.006 Sum_probs=161.6
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 428 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 428 (1106)
....+.++++.++|+ +.++...++.|.+||.. ++.... .+..+...+.++++.++|++++
T Consensus 18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~------------------~~~~~~~~~~~i~~~~~g~l~v 77 (300)
T 2qc5_A 18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEF------------------EVPTPDAKVMCLIVSSLGDIWF 77 (300)
T ss_dssp TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEE------------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEE------------------ECCCCCCcceeEEECCCCCEEE
Confidence 457889999999998 57666667899999987 543321 1223345789999999999888
Q ss_pred EEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeE-EEeccCCCeEEE
Q 001295 429 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY-IFEGHEAPVYSV 507 (1106)
Q Consensus 429 s~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~~ 507 (1106)
+...++.|..||.. ++... ..+......+.++++.++|. ++++...++.|..||.. ++... .+......+..+
T Consensus 78 ~~~~~~~v~~~d~~-g~~~~--~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i 151 (300)
T 2qc5_A 78 TENGANKIGKLSKK-GGFTE--YPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFI 151 (300)
T ss_dssp EETTTTEEEEECTT-SCEEE--EECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEE
T ss_pred EecCCCeEEEECCC-CCeEE--ecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeE
Confidence 77778889999988 54321 12333446789999999998 67777778899999977 65442 233344667888
Q ss_pred eccccCCceEEEEEecCCeEEEEeCCCCCceeEee--CCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEE
Q 001295 508 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE--APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 585 (1106)
Q Consensus 508 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 585 (1106)
++. +++.+.++...++.|..||. ++.. ..+. ..... ...+.++++++..++..
T Consensus 152 ~~d--~~g~l~v~~~~~~~i~~~~~-~g~~-~~~~~~~~~~~---------------------~~~i~~d~~g~l~v~~~ 206 (300)
T 2qc5_A 152 TLG--SDNALWFTENQNNSIGRITN-TGKL-EEYPLPTNAAA---------------------PVGITSGNDGALWFVEI 206 (300)
T ss_dssp EEC--TTSSEEEEETTTTEEEEECT-TCCE-EEEECSSTTCC---------------------EEEEEECTTSSEEEEET
T ss_pred EEC--CCCCEEEEecCCCeEEEECC-CCcE-EEeeCCCCCCC---------------------cceEEECCCCCEEEEcc
Confidence 864 45566666666888999987 3222 2221 11222 33455555555555555
Q ss_pred CCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEc
Q 001295 586 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 639 (1106)
Q Consensus 586 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 639 (1106)
..+.|.+|+. +++..... .......+.+++++++|+++++...++.|..|+.
T Consensus 207 ~~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 207 MGNKIGRITT-TGEISEYD-IPTPNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp TTTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred CCCEEEEEcC-CCcEEEEE-CCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 6778999998 55544332 2222345788999999997777666788888876
No 211
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.35 E-value=1.2e-10 Score=126.97 Aligned_cols=245 Identities=9% Similarity=0.039 Sum_probs=162.9
Q ss_pred cceEEEEEcCCCceEEE-------eecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccC-CCCCCCCeeE
Q 001295 744 TKISRLIFTNSGNAILA-------LASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT-DSNPEEAVPC 815 (1106)
Q Consensus 744 ~~i~~~~~s~~~~~l~~-------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~v~~ 815 (1106)
....+++|++++..+++ ...++.|.+|+... +........ ..++...+.+
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~----------------------g~~~~~~~~~~~~~~~~~~~ 75 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT----------------------GKKTVICKPEVNGYGGIPAG 75 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTT----------------------CCEEEEECCEETTEECCEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCC----------------------CcEEEEEecccCCCCCCCce
Confidence 35678999999987777 56778888887542 221111000 0013456889
Q ss_pred EEEecC-CCEEEEEeCCeEEEEEcCCCceeee-ecC----CCCCeeEEEEecCCCceEEEeeCC---------------C
Q 001295 816 FALSKN-DSYVMSASGGKISLFNMMTFKTMAT-FMP----PPPAATFLAFHPQDNNIIAIGMDD---------------S 874 (1106)
Q Consensus 816 l~~s~~-~~~l~~~sdg~i~vwd~~~~~~~~~-~~~----~~~~v~~l~~s~~d~~~la~g~~d---------------g 874 (1106)
++++++ ++++++..++.|.+||.. ++.... ... ....+.++++++ +++++++...+ +
T Consensus 76 i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 76 CQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp EEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCC
Confidence 999999 776666656689999988 665433 221 123588999999 78877776655 5
Q ss_pred cEEEEEeecceEEEEecCcccCeeEEEEe----cCCCEE-EEEcCCCcEEEEeCC-CcccccceeecccCCCCCCCCCCc
Q 001295 875 SIQIYNVRVDEVKSKLKGHSKRITGLAFS----HALNVL-VSSGADSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQSDT 948 (1106)
Q Consensus 875 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~s----~d~~~l-~s~s~Dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~i~ 948 (1106)
.|..|+.. ++... +..+......++|+ +|++.| ++...++.|.+|+++ +++...........++. ...+.
T Consensus 154 ~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~--~~~p~ 229 (314)
T 1pjx_A 154 SIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH--EGGAD 229 (314)
T ss_dssp EEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS--SCEEE
T ss_pred eEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC--CCCCC
Confidence 67777655 55433 33344557889999 999755 445678899999986 33221111222222211 02457
Q ss_pred eEEEcCCCcEEEEE-eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEE-EcCCeEEEEEcCC
Q 001295 949 RVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC-FLDATVCVFSAAN 1018 (1106)
Q Consensus 949 ~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~-s~Dg~i~vwd~~~ 1018 (1106)
.++++++|+++++. .++.|.+||..+++.+..+. .+...+.+++|++|+++|+.+ ..++.|..|++..
T Consensus 230 ~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR--CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE--CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe--CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 89999999988874 67899999998777666554 345789999999999965544 4567899999864
No 212
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.31 E-value=2.3e-10 Score=126.86 Aligned_cols=239 Identities=13% Similarity=0.071 Sum_probs=161.9
Q ss_pred EEEEecCCCEEEEEe-----------CCeEEEEEcCCCceeeeecCC-------CCCeeEEEEecCCCceEEEeeC--CC
Q 001295 815 CFALSKNDSYVMSAS-----------GGKISLFNMMTFKTMATFMPP-------PPAATFLAFHPQDNNIIAIGMD--DS 874 (1106)
Q Consensus 815 ~l~~s~~~~~l~~~s-----------dg~i~vwd~~~~~~~~~~~~~-------~~~v~~l~~s~~d~~~la~g~~--dg 874 (1106)
.++++||+++++++. ++.|.++|..+++.+.++... ......++|+| |+++|+++.. ++
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~ 200 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAP 200 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSC
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEecCCCC
Confidence 799999999888774 467999999999988876422 13456789999 8888888764 57
Q ss_pred cEEEEEeecceEEEEecCcccCeeEEEEecCC-CEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEc
Q 001295 875 SIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 953 (1106)
Q Consensus 875 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 953 (1106)
.|.++|+.+++.+.++.--.. ....|++ ..+++.+.||++.+.+..+++.... ......-... .....+.|+
T Consensus 201 ~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~-~~~~~~v~~~--p~~~~~~~~ 273 (426)
T 3c75_H 201 AVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVT-NTEVFHTEDE--LLINHPAFS 273 (426)
T ss_dssp EEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEE-ECCCCSCTTS--CBCSCCEEC
T ss_pred eEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE-eeeeeccCCC--ceeeEeeec
Confidence 899999999999888764221 2233433 5556667777777777744332210 0001100000 012346789
Q ss_pred CCCcEEEE-EeCCeEEEEecCCceEe--eecccCC--------CCCCeeEEEECCCCCEEEEEEc----------CCeEE
Q 001295 954 QDQIHFLV-VHETQLAIFETTKLECV--KQWVPRE--------SSAPITHATFSCDSQLVYACFL----------DATVC 1012 (1106)
Q Consensus 954 ~dg~~l~~-~~d~~v~i~d~~~~~~~--~~~~~~~--------h~~~v~~l~~s~d~~~l~t~s~----------Dg~i~ 1012 (1106)
+++..++. ...+.|.+.|....... ..+.... .......++++||++.|++... ++.|.
T Consensus 274 ~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~Vs 353 (426)
T 3c75_H 274 LRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVV 353 (426)
T ss_dssp TTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEE
T ss_pred CCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEE
Confidence 99887666 56788999998655421 2221100 0112234789999998777653 35799
Q ss_pred EEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCC-EEEEEe-CCCcEEEEeecCCC
Q 001295 1013 VFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPLESE 1073 (1106)
Q Consensus 1013 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~-~l~t~~-~Dg~v~vW~~~~~~ 1073 (1106)
++|..+++.+.++. .+. .|..+.|+| |++ ++++.. .++.|.|+|+.+.+
T Consensus 354 VID~~T~kvv~~I~----vg~-------~P~gia~sp-Dg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 354 VLNAETGERINKIE----LGH-------EIDSINVSQ-DAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp EEETTTCCEEEEEE----EEE-------EECEEEECC-SSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EEECCCCeEEEEEE----CCC-------CcCeEEEcc-CCCEEEEEEcCCCCeEEEEECCCCC
Confidence 99999999999886 221 244799999 677 788777 59999999999988
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.29 E-value=7.4e-10 Score=124.60 Aligned_cols=248 Identities=8% Similarity=-0.001 Sum_probs=164.0
Q ss_pred CCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCC--cEEEEEeecceEE
Q 001295 811 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVK 887 (1106)
Q Consensus 811 ~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg--~v~iwd~~~~~~~ 887 (1106)
.....++++++++++++.. ++.|++||..++........ ..... ++|++ +++.|+++..++ .|++|+..++...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence 4578999999999777666 68999999988776555443 23334 99999 788888887766 7888887765443
Q ss_pred EEe----cCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecc--cCCCCCCCCCCc-eEEEcCC-CcEE
Q 001295 888 SKL----KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQI--PTGRTPTAQSDT-RVQFHQD-QIHF 959 (1106)
Q Consensus 888 ~~l----~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~i~-~~~~s~d-g~~l 959 (1106)
..+ ..+...+.+++++|++..|..+..++.|+.||..++... .+.. ..+... .... .++|+|+ +.++
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~---~~~~~~~~g~~~--~~P~~~ia~~p~~g~ly 282 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT---LIKQLELSGSLG--TNPGPYLIYYFVDSNFY 282 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE---EEEECCCCSCCC--CSSCCEEEEETTTTEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE---EEecccccCCCC--CCccccEEEeCCCCEEE
Confidence 333 225567889999995555555777889999999875421 1110 111111 1123 9999996 5554
Q ss_pred EE-EeCCeEEEEecCCceEeeecccCC-------------CCCCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCceeEEe
Q 001295 960 LV-VHETQLAIFETTKLECVKQWVPRE-------------SSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCR 1024 (1106)
Q Consensus 960 ~~-~~d~~v~i~d~~~~~~~~~~~~~~-------------h~~~v~~l~~s~d~~~l~t~s-~Dg~i~vwd~~~~~~~~~ 1024 (1106)
++ ...+.|+.|+.... +..+.... .-.....++++++|+++++-+ .++.|+.|++.++.....
T Consensus 283 v~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~ 360 (409)
T 3hrp_A 283 MSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTV 360 (409)
T ss_dssp EEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEE
T ss_pred EEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEE
Confidence 44 35688999997643 22221100 023578999999999777777 789999999888875433
Q ss_pred eCCCcc--cCCC--CCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEee
Q 001295 1025 INPSAY--LPAG--VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1069 (1106)
Q Consensus 1025 ~~~~~~--~~~~--~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~ 1069 (1106)
...... ...+ ....--.|..+++++ ++.++++-..++.|+.+.+
T Consensus 361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 361 AGQVDVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EECTTCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred eCCCCCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 321000 0000 001113467899999 5888888888888888775
No 214
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.29 E-value=1.3e-09 Score=122.63 Aligned_cols=255 Identities=11% Similarity=0.039 Sum_probs=164.5
Q ss_pred CCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEE
Q 001295 351 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 430 (1106)
Q Consensus 351 ~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 430 (1106)
...+.++|+++|+ |+++...++.|++||..++..... ... ..... ++|+|++++|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 4688999999998 788877789999999987765432 112 12233 9999999999988
Q ss_pred eCCC--eEEEEEccCCceeeeeeeecc-ccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEE----EeccCCC
Q 001295 431 YSRH--IVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI----FEGHEAP 503 (1106)
Q Consensus 431 ~~d~--~v~iwd~~~~~~~~~~~~l~~-h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~----~~~h~~~ 503 (1106)
..++ .|.+|+..++........+.. +...+.+++++|++.. |+.+..++.|+.||..++..... ..++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~--lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW--LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE--EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe--EEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 8765 799999887654332212222 4567889999996553 33366688999999887764322 2222222
Q ss_pred e--EEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEE
Q 001295 504 V--YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 581 (1106)
Q Consensus 504 v--~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l 581 (1106)
- ..++|++. ++.++++...++.|+.|+.+.. ...+....... . ..++. .....-.....++++++|+.+
T Consensus 267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~-g---~~dg~--~~~~~~~~P~gia~d~dG~ly 337 (409)
T 3hrp_A 267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQK-T---VQDGL--REEALFAQPNGMTVDEDGNFY 337 (409)
T ss_dssp SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCC-S---CBCEE--GGGCBCSSEEEEEECTTCCEE
T ss_pred CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCC-C---cCCCc--ccccEeCCCeEEEEeCCCCEE
Confidence 2 27887653 3467777778899999987642 22222211000 0 00000 000001134567788888877
Q ss_pred EEEE-CCCeEEEEECCCcceeEEEccCC-------------CCCCcCeEEEccCCCEEEEEeCCCcEEEEEc
Q 001295 582 LAAG-DDFSIKFWDMDSVQLLTSIDADG-------------GLPASPRIRFNKDGCLLAVSTNDNGIKILAT 639 (1106)
Q Consensus 582 ~~~~-~d~~i~iwd~~~~~~~~~~~~~~-------------~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 639 (1106)
++-. .++.|+.|++.+++... +.+.. .......++++++|.++++-..++.|+.+++
T Consensus 338 vad~~~~~~I~~~~~~~G~v~~-~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 338 IVDGFKGYCLRKLDILDGYVST-VAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEETTTTCEEEEEETTTTEEEE-EEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEeCCCCCEEEEEECCCCEEEE-EeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 7777 78999999987776443 32220 1234678999999988888888888988765
No 215
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.28 E-value=7.6e-10 Score=119.78 Aligned_cols=240 Identities=12% Similarity=0.047 Sum_probs=155.8
Q ss_pred eeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC
Q 001295 344 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 423 (1106)
Q Consensus 344 ~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd 423 (1106)
..+..+.......+|+|+|++|++++..++.|..|+. +++... +..+...+..++++++
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~--------------------~~~~~~~~~gl~~d~d 96 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDV--------------------LLDATAFTNGNAVDAQ 96 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEE--------------------EEESCSCEEEEEECTT
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEE--------------------EeCCCCccceeeECCC
Confidence 3344466778899999999988889888999999998 444221 2334557899999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCceeeeeeeeccc-cCCeeEEEEcCCCCceEEEE----ecC-------------CCcEEE
Q 001295 424 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVIT----CGD-------------DKTIKV 485 (1106)
Q Consensus 424 g~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h-~~~V~~~~~s~d~~~~~l~s----~~~-------------d~~i~i 485 (1106)
|+++++...++.|.+|+.. ++.........+. ...+.++++.++|. +++| |.. .+.|..
T Consensus 97 G~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~ 173 (305)
T 3dr2_A 97 QRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYR 173 (305)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEE
T ss_pred CCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEE
Confidence 9977766666889999986 4432211111121 23578899999998 6776 332 256888
Q ss_pred EeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecC------CeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCe
Q 001295 486 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 559 (1106)
Q Consensus 486 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 559 (1106)
||..+++..... .......++|++ +++.|+.+... +.|..|++.... +....
T Consensus 174 ~d~~~g~~~~~~--~~~~p~gl~~sp--dg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~----------------- 231 (305)
T 3dr2_A 174 LPPDGSPLQRMA--DLDHPNGLAFSP--DEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRR----------------- 231 (305)
T ss_dssp ECSSSCCCEEEE--EESSEEEEEECT--TSSEEEEEECCC---CCCEEEEEEEETTE-EEEEE-----------------
T ss_pred EcCCCCcEEEEe--cCCCCcceEEcC--CCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCe-----------------
Confidence 887777654433 445667888755 44666666554 789999876532 11000
Q ss_pred EEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEE
Q 001295 560 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIK 635 (1106)
Q Consensus 560 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 635 (1106)
.+..........+.++++|+. .++..+ .|.+|+. .++.+..+.... .+.+++|+++++.|.+++.++..+
T Consensus 232 ~~~~~~~~~pdgi~~d~~G~l-wv~~~~-gv~~~~~-~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 232 HFASVPDGLPDGFCVDRGGWL-WSSSGT-GVCVFDS-DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp EEECCSSSCCCSEEECTTSCE-EECCSS-EEEEECT-TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEEEE
T ss_pred EEEECCCCCCCeEEECCCCCE-EEecCC-cEEEECC-CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 000000112233566777774 444444 5999998 577777776543 478999999999998888764433
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.27 E-value=1.6e-09 Score=116.68 Aligned_cols=237 Identities=11% Similarity=0.083 Sum_probs=151.9
Q ss_pred CCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEE
Q 001295 350 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 429 (1106)
Q Consensus 350 ~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 429 (1106)
..-..+..|+|++..|+++...++.|..||..+++... ......+.+++++|+|+++++
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~---------------------~~~~~~~~~i~~~~dG~l~v~ 70 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR---------------------VTMDAPVSSVALRQSGGYVAT 70 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE---------------------EECSSCEEEEEEBTTSSEEEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE---------------------EeCCCceEEEEECCCCCEEEE
Confidence 34556899999877788888888999999998876422 112357999999999996554
Q ss_pred EeCCCeEEEEEccCCceeeeeeeecc--ccCCeeEEEEcCCCCceEEEEe-cC--------CCcEEEEeCCCCceeEEEe
Q 001295 430 AYSRHIVQIYSYHGGDEVRQHLEIDA--HVGGVNDIAFSHPNKQLCVITC-GD--------DKTIKVWDATNGAKQYIFE 498 (1106)
Q Consensus 430 ~~~d~~v~iwd~~~~~~~~~~~~l~~--h~~~V~~~~~s~d~~~~~l~s~-~~--------d~~i~iwd~~~~~~~~~~~ 498 (1106)
. ++.|.+||..+++... +..... ....++.++++|+|+ ++++. +. .....||.+.....+..+.
T Consensus 71 -~-~~~l~~~d~~~g~~~~-~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~ 145 (297)
T 3g4e_A 71 -I-GTKFCALNWKEQSAVV-LATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF 145 (297)
T ss_dssp -E-TTEEEEEETTTTEEEE-EEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE
T ss_pred -E-CCeEEEEECCCCcEEE-EEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEEEEe
Confidence 4 5679999998876432 222111 123588999999998 45543 21 1234555544322233333
Q ss_pred ccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCC-CCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCC
Q 001295 499 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 577 (1106)
Q Consensus 499 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~ 577 (1106)
.+....+.++|+++.. .++++.+.++.|..||++. ....... .+..... ........++++++
T Consensus 146 ~~~~~pngi~~spdg~-~lyv~~~~~~~i~~~~~d~~~G~~~~~--------~~~~~~~-------~~~~~p~g~~~d~~ 209 (297)
T 3g4e_A 146 DQVDISNGLDWSLDHK-IFYYIDSLSYSVDAFDYDLQTGQISNR--------RSVYKLE-------KEEQIPDGMCIDAE 209 (297)
T ss_dssp EEESBEEEEEECTTSC-EEEEEEGGGTEEEEEEECTTTCCEEEE--------EEEEECC-------GGGCEEEEEEEBTT
T ss_pred eccccccceEEcCCCC-EEEEecCCCCcEEEEeccCCCCcccCc--------EEEEECC-------CCCCCCCeeEECCC
Confidence 3445567888865442 2446667789999998742 1111100 0000000 00113345667777
Q ss_pred CCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEc-cCCCEEEEEeC
Q 001295 578 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTN 630 (1106)
Q Consensus 578 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~ 630 (1106)
|+..++....+.|.+||..+++.+..+..+. ..+++++|. |+++.|++++.
T Consensus 210 G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~--~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 210 GKLWVACYNGGRVIRLDPVTGKRLQTVKLPV--DKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp SCEEEEEETTTEEEEECTTTCCEEEEEECSS--SBEEEEEEESGGGCEEEEEEB
T ss_pred CCEEEEEcCCCEEEEEcCCCceEEEEEECCC--CCceEEEEeCCCCCEEEEEcC
Confidence 7777777778899999999999988887653 358899998 88887776664
No 217
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.26 E-value=8.6e-10 Score=118.80 Aligned_cols=228 Identities=11% Similarity=0.076 Sum_probs=149.6
Q ss_pred ceEEEEEcCCCceE-EEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCC
Q 001295 745 KISRLIFTNSGNAI-LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 823 (1106)
Q Consensus 745 ~i~~~~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~ 823 (1106)
-..+..|++++..+ ++...++.|..|+... +...... ....+.+++++++|+
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~----------------------~~~~~~~-----~~~~~~~i~~~~dG~ 66 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFT----------------------KQVQRVT-----MDAPVSSVALRQSGG 66 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTT----------------------CCEEEEE-----CSSCEEEEEEBTTSS
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCC----------------------CcEEEEe-----CCCceEEEEECCCCC
Confidence 44578888865544 4445578888887652 2211110 345689999999999
Q ss_pred EEEEEeCCeEEEEEcCCCceeeeecC----CCCCeeEEEEecCCCceEEEeeCC---------CcEEEEEeec-ceEEEE
Q 001295 824 YVMSASGGKISLFNMMTFKTMATFMP----PPPAATFLAFHPQDNNIIAIGMDD---------SSIQIYNVRV-DEVKSK 889 (1106)
Q Consensus 824 ~l~~~sdg~i~vwd~~~~~~~~~~~~----~~~~v~~l~~s~~d~~~la~g~~d---------g~v~iwd~~~-~~~~~~ 889 (1106)
++++ .++.|.+||..+++....... ....+..++++| +++++++...+ ..-.||.+.. ++. ..
T Consensus 67 l~v~-~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~ 143 (297)
T 3g4e_A 67 YVAT-IGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-KK 143 (297)
T ss_dssp EEEE-ETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-EE
T ss_pred EEEE-ECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCE-EE
Confidence 5554 577899999987765332221 123478899999 78877654322 3345665543 333 23
Q ss_pred ecCcccCeeEEEEecCCCEE-EEEcCCCcEEEEeCC--CcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCC
Q 001295 890 LKGHSKRITGLAFSHALNVL-VSSGADSQLCVWSSD--GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET 965 (1106)
Q Consensus 890 l~~h~~~V~~l~~s~d~~~l-~s~s~Dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~ 965 (1106)
+..+....+.++|+||++.| ++.+.++.|.+|+++ ++.....+.+...... ...+..++++++|++.++. ..+
T Consensus 144 ~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~---~~~p~g~~~d~~G~lwva~~~~~ 220 (297)
T 3g4e_A 144 YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKE---EQIPDGMCIDAEGKLWVACYNGG 220 (297)
T ss_dssp EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGG---GCEEEEEEEBTTSCEEEEEETTT
T ss_pred EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCC---CCCCCeeEECCCCCEEEEEcCCC
Confidence 33344556899999999876 555667889999873 4433222222211111 1245789999999887775 567
Q ss_pred eEEEEecCCceEeeecccCCCCCCeeEEEEC-CCCCEEEEEEc
Q 001295 966 QLAIFETTKLECVKQWVPRESSAPITHATFS-CDSQLVYACFL 1007 (1106)
Q Consensus 966 ~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s-~d~~~l~t~s~ 1007 (1106)
.|..||..+++.+..+.. +...+++++|. ||++.|+.++.
T Consensus 221 ~v~~~d~~tG~~~~~i~~--p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 221 RVIRLDPVTGKRLQTVKL--PVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEECTTTCCEEEEEEC--SSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEEEcCCCceEEEEEEC--CCCCceEEEEeCCCCCEEEEEcC
Confidence 899999999998887763 35679999998 88887766554
No 218
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.26 E-value=1.3e-10 Score=128.00 Aligned_cols=270 Identities=8% Similarity=-0.013 Sum_probs=174.7
Q ss_pred cceEEEEEcCCCceEEEeec--CceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295 744 TKISRLIFTNSGNAILALAS--NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 821 (1106)
Q Consensus 744 ~~i~~~~~s~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 821 (1106)
.....++++++|+.+++... ++.++||.+..+ ... -|. +.. .....+-..+..++++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g------~~~------~~p--~~~-----~~~~~~~~~p~gv~~d~~ 77 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD------GLI------PFP--PQS-----GNAIITFDTVLGIKSDGN 77 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT------EEE------ESC--CCC-----SSCCCCCSCEEEEEECSS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC------Cee------cCC--Ccc-----cCcccceeEeeEEEEcCC
Confidence 46789999999998777542 343566655411 110 000 000 001125667999999999
Q ss_pred CCEEEEEe------CCeEEEEEcCCCceeeeecCC------CCCeeEEEEecCCCceEEEee---CCCcEEEEEeecceE
Q 001295 822 DSYVMSAS------GGKISLFNMMTFKTMATFMPP------PPAATFLAFHPQDNNIIAIGM---DDSSIQIYNVRVDEV 886 (1106)
Q Consensus 822 ~~~l~~~s------dg~i~vwd~~~~~~~~~~~~~------~~~v~~l~~s~~d~~~la~g~---~dg~v~iwd~~~~~~ 886 (1106)
++++++-. ++.|.+||+.+++.+..+... ...+..++++++++..+++.. .++.|.+||+.+++.
T Consensus 78 g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~ 157 (343)
T 2qe8_A 78 GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA 157 (343)
T ss_dssp SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence 98666543 378999999988876665422 234689999984455556555 678999999999888
Q ss_pred EEEecCcccCee-EEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eC
Q 001295 887 KSKLKGHSKRIT-GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE 964 (1106)
Q Consensus 887 ~~~l~~h~~~V~-~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d 964 (1106)
...+.+|..... ...++++|..+.+.+.|+.++.|.. .+..++|+|||+.|.++ ..
T Consensus 158 ~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~~ 215 (343)
T 2qe8_A 158 ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPMH 215 (343)
T ss_dssp EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEESS
T ss_pred EEEecCCCcccccccceeECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeCC
Confidence 777776533211 1456678888888888888876642 23679999999988875 33
Q ss_pred -CeEEEEecCC---c-----eEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCC
Q 001295 965 -TQLAIFETTK---L-----ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1035 (1106)
Q Consensus 965 -~~v~i~d~~~---~-----~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1035 (1106)
..+..++... + +....+...++......++++++|.++++...++.|.+||..+++...... .+.
T Consensus 216 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~----~~~-- 289 (343)
T 2qe8_A 216 STSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT----DEK-- 289 (343)
T ss_dssp CSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE----CGG--
T ss_pred CCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE----CCc--
Confidence 3555555321 1 000001111223456789999999999988889999999986676443322 111
Q ss_pred CCCCccceEEEEeCCCCCEEEEEeCCCcE
Q 001295 1036 SSSNVHPLVIAAHPQEPNEFALGLSDGGV 1064 (1106)
Q Consensus 1036 ~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v 1064 (1106)
...|..++|.+ +++++++.+..+.+
T Consensus 290 ---~~~p~~va~~~-~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 290 ---LSWTDSFNFGS-DGYLYFDCNQLHHS 314 (343)
T ss_dssp ---GSCEEEEEECT-TSCEEEEECCGGGS
T ss_pred ---eecCCeeEECC-CCcEEEEeCccccc
Confidence 13456899998 58888887755544
No 219
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.25 E-value=1.1e-10 Score=127.39 Aligned_cols=173 Identities=13% Similarity=0.126 Sum_probs=134.8
Q ss_pred CCeeEEEEecCCCEEEEEeCCeEEEEEcCCCc-----------eeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEE
Q 001295 811 EAVPCFALSKNDSYVMSASGGKISLFNMMTFK-----------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 879 (1106)
Q Consensus 811 ~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~-----------~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iw 879 (1106)
..+..+++++...++++|+...+.+|++++.. ..... .+.. |+.++| |+.+|+++ .++.|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence 36889999999999999997788889976433 11222 3555 999999 57888888 88999999
Q ss_pred EeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEE
Q 001295 880 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 959 (1106)
Q Consensus 880 d~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l 959 (1106)
|+.+.........|...|.++.+.+. .+++++.||.|.+||++++... .. ...|++++|||+| ..
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~-----~~-------~~~Vs~v~WSpkG-~~ 176 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK-----QL-------AQNVTSFDVTNSQ-LA 176 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE-----EE-------EESEEEEEECSSE-EE
T ss_pred EchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccc-----cc-------cCCceEEEEcCCc-eE
Confidence 99886656666778888988887755 3888999999999999975532 11 1368999999999 44
Q ss_pred EEEeCCeEEEEecCCceE--eeeccc----C---CCCCCeeEEEECCCCCEEEE
Q 001295 960 LVVHETQLAIFETTKLEC--VKQWVP----R---ESSAPITHATFSCDSQLVYA 1004 (1106)
Q Consensus 960 ~~~~d~~v~i~d~~~~~~--~~~~~~----~---~h~~~v~~l~~s~d~~~l~t 1004 (1106)
+...||.+++|+..++++ .+.+.. . +|...|.+|.|.+++.+|++
T Consensus 177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 447899999999988776 455521 1 47889999999999999876
No 220
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.22 E-value=2.5e-10 Score=124.52 Aligned_cols=198 Identities=9% Similarity=-0.022 Sum_probs=128.3
Q ss_pred eEEEEecCCCEEEEEe---CCeEEE--EEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec-----
Q 001295 814 PCFALSKNDSYVMSAS---GGKISL--FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV----- 883 (1106)
Q Consensus 814 ~~l~~s~~~~~l~~~s---dg~i~v--wd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~----- 883 (1106)
..++++|||++++++. +..|.+ +|+.+ +..+..... ..+.|++.+.+++.+.||.+.+.|+.+
T Consensus 127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 4578888988888875 256888 88877 344432111 223453455666777899998889886
Q ss_pred ceEEEE----ecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCC----CCCCCCCCceEEEcCC
Q 001295 884 DEVKSK----LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG----RTPTAQSDTRVQFHQD 955 (1106)
Q Consensus 884 ~~~~~~----l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~s~d 955 (1106)
++.... +.-...+. + ++++..++..+. +.|.+.|+.+........+..... ..........++|+||
T Consensus 200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~d 274 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN 274 (368)
T ss_dssp EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT
T ss_pred CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCC
Confidence 543321 11112232 3 667777766666 899999987532111111111000 0000012234889999
Q ss_pred CcEEEEE-e-C--------CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCE-EEEEE-cCCeEEEEEcCCceeEE
Q 001295 956 QIHFLVV-H-E--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL-VYACF-LDATVCVFSAANLKLRC 1023 (1106)
Q Consensus 956 g~~l~~~-~-d--------~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~-l~t~s-~Dg~i~vwd~~~~~~~~ 1023 (1106)
++.+.++ . . +.+.++|+.+.+.+..+.... ....|+|+|||++ +++.. .+++|.|+|+.+++.+.
T Consensus 275 g~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~ 351 (368)
T 1mda_H 275 TDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS 351 (368)
T ss_dssp TTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred CCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEE
Confidence 9988874 3 2 367799999999999887532 6899999999985 55555 48999999999999998
Q ss_pred eeC
Q 001295 1024 RIN 1026 (1106)
Q Consensus 1024 ~~~ 1026 (1106)
++.
T Consensus 352 ~I~ 354 (368)
T 1mda_H 352 SVE 354 (368)
T ss_dssp ECC
T ss_pred EEE
Confidence 887
No 221
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.21 E-value=1.1e-09 Score=133.09 Aligned_cols=245 Identities=14% Similarity=0.116 Sum_probs=154.5
Q ss_pred CCCCcEEEEEecCCCeEEEEEecc----CcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCC
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNV----GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 424 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~d----g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 424 (1106)
|...+..++|||||++|+.+.+.. .+|+|||+.+++.+.. . +.+ .....++|+ ||
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~-----------------~~~--~k~~~~~Ws-Dg 185 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-P-----------------LKD--VKFSGISWL-GN 185 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-E-----------------EEE--EESCCCEEE-TT
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-c-----------------cCC--ceeccEEEe-CC
Confidence 456788999999999755544333 4699999999986542 1 111 113567899 99
Q ss_pred CEEEEEeCCC-------------eEEEEEccCCcee-eeeeeecc-ccCCeeEEEEcCCCCceEEEEec---CCCcEEEE
Q 001295 425 SLFGVAYSRH-------------IVQIYSYHGGDEV-RQHLEIDA-HVGGVNDIAFSHPNKQLCVITCG---DDKTIKVW 486 (1106)
Q Consensus 425 ~~las~~~d~-------------~v~iwd~~~~~~~-~~~~~l~~-h~~~V~~~~~s~d~~~~~l~s~~---~d~~i~iw 486 (1106)
+.|+.++.+. .|++|++.++..- ..+..... |...+..+.|+|||+.+ +++.+ .+..|++|
T Consensus 186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~~ 264 (693)
T 3iuj_A 186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYVK 264 (693)
T ss_dssp TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEEE
T ss_pred CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEEE
Confidence 9999998774 3999999876531 12223334 55567899999999963 33333 23589999
Q ss_pred eCCCCc-eeEEEeccCCCeEEEeccccCCceEEEEEecC---CeEEEEeCCCCCc--eeEeeCCCCeeEEEEEecCCCeE
Q 001295 487 DATNGA-KQYIFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRT 560 (1106)
Q Consensus 487 d~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~ 560 (1106)
|+.++. ....+..+....... +.+.. +.+++....+ +.|..+|+.+... ...+..+...+. .|+++
T Consensus 265 d~~~~~~~~~~l~~~~~~~~~~-~~~~g-~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~---- 336 (693)
T 3iuj_A 265 DLSQENAPLLTVQGDLDADVSL-VDNKG-STLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSG---- 336 (693)
T ss_dssp ETTSTTCCCEEEECSSSSCEEE-EEEET-TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEE----
T ss_pred ECCCCCCceEEEeCCCCceEEE-EeccC-CEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEE----
Confidence 998764 456666666665554 33333 2455555443 6789999887543 123333333222 44444
Q ss_pred EEeeeccceeEEEEcCCCCEEEEEEC-CC--eEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCC----Cc
Q 001295 561 YQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND----NG 633 (1106)
Q Consensus 561 ~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d----g~ 633 (1106)
+++|+.... ++ .|++|++..+ ....+.... ...+..+.+++++..++....+ +.
T Consensus 337 -----------------g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~ 397 (693)
T 3iuj_A 337 -----------------SGYLFAEYMVDATARVEQFDYEGK-RVREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPT 397 (693)
T ss_dssp -----------------TTEEEEEEEETTEEEEEEECTTSC-EEEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCE
T ss_pred -----------------CCEEEEEEEECCeeEEEEEECCCC-eeEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCE
Confidence 445665543 43 6899998754 444554322 2245566778888777666544 78
Q ss_pred EEEEEccCC
Q 001295 634 IKILATSDG 642 (1106)
Q Consensus 634 i~iwd~~~~ 642 (1106)
+..||+.++
T Consensus 398 l~~~d~~~g 406 (693)
T 3iuj_A 398 LYRFEPKSG 406 (693)
T ss_dssp EEEECTTTC
T ss_pred EEEEECCCC
Confidence 999988766
No 222
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.21 E-value=2.5e-05 Score=92.12 Aligned_cols=526 Identities=10% Similarity=0.029 Sum_probs=279.6
Q ss_pred eEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEE-EeCCCeEEEEEcc
Q 001295 364 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV-AYSRHIVQIYSYH 442 (1106)
Q Consensus 364 ~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las-~~~d~~v~iwd~~ 442 (1106)
+|+++ ..+.|+..|+++...... +....-..+..|+|.+++..|.. -..++.|..+++.
T Consensus 8 ~Ll~s--~~~~I~~i~l~~~~~~~~------------------~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~ 67 (628)
T 4a0p_A 8 FLLFS--RRADIRRISLETNNNNVA------------------IPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMN 67 (628)
T ss_dssp EEEEE--ETTEEEEEESSCTTCEEE------------------CCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEE--eCCcEEEEECCCCCcceE------------------EEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECC
Confidence 34543 457888889876543221 01112346889999996665554 4567889999987
Q ss_pred CCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEE-
Q 001295 443 GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFST- 521 (1106)
Q Consensus 443 ~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~- 521 (1106)
+..... .+.........+++.+.+.. ++++-...+.|.+.++........+.........+++.+. +|.++++-
T Consensus 68 g~~~~~---v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~-~G~lY~tD~ 142 (628)
T 4a0p_A 68 GSALEH---VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA-EGFMYWTEW 142 (628)
T ss_dssp SCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT-TTEEEEEEC
T ss_pred CCCcEE---EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC-CCeEEEeCC
Confidence 654222 12222245778999887775 4566667789999997654332233334455678887653 33444444
Q ss_pred ecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEE-ECCCeEEEEECCCcce
Q 001295 522 ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQL 600 (1106)
Q Consensus 522 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~ 600 (1106)
+..+.|...+++........ ........+++.+++ ..|+.+ ...+.|..+|+.....
T Consensus 143 g~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~~~---------------------~~LY~aD~~~~~I~~~d~dG~~~ 200 (628)
T 4a0p_A 143 GGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAK---------------------RRLYWTDLDTNLIESSNMLGLNR 200 (628)
T ss_dssp SSSCEEEEEETTSCSCEEEE-CSCSSEEEEEEETTT---------------------TEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCCEEEEEeCCCCceEEEE-CCCCCcceEEEcccc---------------------CEEEEEECCCCEEEEEcCCCCce
Confidence 22567777776543322222 223334455555443 345444 3567888888865433
Q ss_pred eEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcc
Q 001295 601 LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATS 680 (1106)
Q Consensus 601 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1106)
..+... ......+++.. +.++++-...+.|...|..++.. ...+...... +
T Consensus 201 -~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~-~~~l~~~~~~-------------p----------- 251 (628)
T 4a0p_A 201 -EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN-RTIIQGHLDY-------------V----------- 251 (628)
T ss_dssp -EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS-CEEEECSCCS-------------C-----------
T ss_pred -EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc-eEEEecCCCC-------------c-----------
Confidence 333221 22345677754 44444555577888888766622 1221110000 0
Q ss_pred cccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEc-CCCceEE
Q 001295 681 AGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT-NSGNAIL 759 (1106)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~ 759 (1106)
..|+++.-........|.. ..+....+++. |.+.+ .
T Consensus 252 -----------------------------------~~i~v~~~~~q~~~n~C~~-------~ng~C~~~C~~~~~~~~-~ 288 (628)
T 4a0p_A 252 -----------------------------------MDILVFHSSRQSGWNECAS-------SNGHCSHLCLAVPVGGF-V 288 (628)
T ss_dssp -----------------------------------CEEEEECGGGSCCCCTTTT-------TGGGCSSEEEEETTTEE-E
T ss_pred -----------------------------------ceeeeeeecccccceEecc-------CCCCcchhhhcCCCCCe-e
Confidence 0111221111000011100 01111112222 21222 2
Q ss_pred EeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcC
Q 001295 760 ALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMM 839 (1106)
Q Consensus 760 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~ 839 (1106)
+.+..|... .....+|.. ...+|+.+....|+-..+.
T Consensus 289 C~C~~g~~l----------------------------------------~~d~~~C~~---~~~~Ll~s~~~~i~~i~l~ 325 (628)
T 4a0p_A 289 CGCPAHYSL----------------------------------------NADNRTCSA---PTTFLLFSQKSAINRMVID 325 (628)
T ss_dssp EECSTTCEE----------------------------------------CTTSSCEEC---CSSEEEEEETTEEEEECCC
T ss_pred EEcCCCcEe----------------------------------------cccCCcCcc---ccceeeeeccceEEEEecc
Confidence 222222111 111122322 3456777767777766665
Q ss_pred CCcee-eeecC-CCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecC------cccCeeEEEEecCCCEE-E
Q 001295 840 TFKTM-ATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG------HSKRITGLAFSHALNVL-V 910 (1106)
Q Consensus 840 ~~~~~-~~~~~-~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~------h~~~V~~l~~s~d~~~l-~ 910 (1106)
..... ..+.. .-..+.+++|.+.+++++.+=...+.|+.++.........+.. ....+.+|++...++.| +
T Consensus 326 ~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~ 405 (628)
T 4a0p_A 326 EQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYW 405 (628)
T ss_dssp TTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEE
T ss_pred cccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEE
Confidence 33211 11221 2345889999985555555555567888888664332222322 23467899999886655 4
Q ss_pred EEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcC-CCcEEEE-EeCC--eEEEEecCCceEeeecccCCC
Q 001295 911 SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLV-VHET--QLAIFETTKLECVKQWVPRES 986 (1106)
Q Consensus 911 s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~-~~d~--~v~i~d~~~~~~~~~~~~~~h 986 (1106)
+-+..+.|.+.+++.. ... .++. ... .....+++.| .|.++.+ .... .|...++..... ..+.. ..
T Consensus 406 td~~~~~I~v~~~~G~-~~~-~l~~---~~l---~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~-~~l~~-~~ 475 (628)
T 4a0p_A 406 TCEATNVINVTRLDGR-SVG-VVLK---GEQ---DRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER-EVLFF-SG 475 (628)
T ss_dssp EETTTTEEEEEETTSC-EEE-EEEE---CTT---CCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC-EEEEC-SS
T ss_pred EcCCCCEEEEEECCCC-eEE-EEEe---CCC---CceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc-EEEEe-cc
Confidence 6667788999998752 211 1111 111 2568999999 5666666 3333 677777754333 22221 22
Q ss_pred CCCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEE
Q 001295 987 SAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVH 1065 (1106)
Q Consensus 987 ~~~v~~l~~s~d~~~l~t~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~ 1065 (1106)
-.....|+++++++.|+.+. ..+.|...+++.. ....+.. .....|.+++... +.++++-...+.|.
T Consensus 476 l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~-~r~~~~~---------~~~~~P~glav~~--~~ly~tD~~~~~i~ 543 (628)
T 4a0p_A 476 LSKPIALALDSRLGKLFWADSDLRRIESSDLSGA-NRIVLED---------SNILQPVGLTVFE--NWLYWIDKQQQMIE 543 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEC---------SSCSCEEEEEEET--TEEEEEETTTTEEE
T ss_pred CCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCC-ceEEEEc---------CCCCCcEEEEEEC--CEEEEEECCCCeEE
Confidence 45679999999877776664 4578999998543 3333321 0112355777764 55666666667777
Q ss_pred EEeecCCC
Q 001295 1066 VFEPLESE 1073 (1106)
Q Consensus 1066 vW~~~~~~ 1073 (1106)
..+..+|+
T Consensus 544 ~~~k~~G~ 551 (628)
T 4a0p_A 544 KIDMTGRE 551 (628)
T ss_dssp EEETTSSS
T ss_pred EEECcCCC
Confidence 77777666
No 223
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.20 E-value=1.2e-09 Score=120.43 Aligned_cols=248 Identities=13% Similarity=0.049 Sum_probs=151.8
Q ss_pred CCcEEEEEecCCCeEEEEEec--cCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295 351 SSPMSMDFHPVQQTLLLVGTN--VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 428 (1106)
Q Consensus 351 ~~v~~~~~sp~g~~llatg~~--dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 428 (1106)
..+..++++|+|+ ++++... ++.++||.+.+++.. .+..|. ....+|-..+..++++++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 6899999999999 5776532 343666666544322 221111 01235667899999999998776
Q ss_pred EEeC-----CCeEEEEEccCCceeeeeeeec----cccCCeeEEEEcCCCCceEEEEec---CCCcEEEEeCCCCceeEE
Q 001295 429 VAYS-----RHIVQIYSYHGGDEVRQHLEID----AHVGGVNDIAFSHPNKQLCVITCG---DDKTIKVWDATNGAKQYI 496 (1106)
Q Consensus 429 s~~~-----d~~v~iwd~~~~~~~~~~~~l~----~h~~~V~~~~~s~d~~~~~l~s~~---~d~~i~iwd~~~~~~~~~ 496 (1106)
+-.. ++.|.+||+.+++.++.+ .+. .+...+..+++++++.. ++++.. .++.|.+||+.+++..+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6543 578999999998755432 221 23345789999987654 456655 688999999998887776
Q ss_pred EeccCCCeE-EEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeee----------
Q 001295 497 FEGHEAPVY-SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR---------- 565 (1106)
Q Consensus 497 ~~~h~~~v~-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~---------- 565 (1106)
+.+|..... ...+. .++..+.+.+.++.++.|.. .+..++++|+++.++....
T Consensus 161 ~~~~~~~~~~~~~~~--~~g~~~~~~~~~g~~~~~~~--------------~~~gia~s~dg~~ly~~~~~~~~l~~~~~ 224 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLV--IDGVPVQIGQPDGTVIRPHL--------------GVNGIVLDAENEWLYLSPMHSTSMYRIKS 224 (343)
T ss_dssp CTTCTTTSCCSCCCE--ETTEECBEECTTSCEECCCC--------------CEEEEEECTTSCEEEEEESSCSEEEEEEH
T ss_pred ecCCCccccccccee--ECCEEEEeccCCCceeceec--------------ccceeEeccCCCEEEEEeCCCCeEEEEEH
Confidence 655422110 01111 12234444444554444321 1234444444443332210
Q ss_pred ----------------------ccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCC
Q 001295 566 ----------------------KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC 623 (1106)
Q Consensus 566 ----------------------~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 623 (1106)
.+....++++++|+.+++...++.|.+||..+++........ ......+++|.++++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va~~~~g~ 303 (343)
T 2qe8_A 225 ADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFNFGSDGY 303 (343)
T ss_dssp HHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEEECTTSC
T ss_pred HHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeEECCCCc
Confidence 112334788888888888888999999998566644333221 233577899999888
Q ss_pred EEEEEeCC
Q 001295 624 LLAVSTND 631 (1106)
Q Consensus 624 ~l~~~~~d 631 (1106)
++++.+..
T Consensus 304 l~v~~~~~ 311 (343)
T 2qe8_A 304 LYFDCNQL 311 (343)
T ss_dssp EEEEECCG
T ss_pred EEEEeCcc
Confidence 77776654
No 224
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.20 E-value=5.7e-09 Score=113.91 Aligned_cols=228 Identities=12% Similarity=0.015 Sum_probs=146.0
Q ss_pred CcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEe
Q 001295 352 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 431 (1106)
Q Consensus 352 ~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 431 (1106)
-..+.+|+|++..+++++..++.|.+||..+++.... . ....|.+++|+|+|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~--------------------~-~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVH--------------------A-LPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE--------------------E-CSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE--------------------E-CCCcceEEEEeCCCeEEEEE-
Confidence 3568899999777888888889999999987754321 1 13479999999999887765
Q ss_pred CCCeEEEEEccCCceeeeeeeec-c-ccCCeeEEEEcCCCCceEEEEecC------CCcEEEEeCCCCceeEEEeccCCC
Q 001295 432 SRHIVQIYSYHGGDEVRQHLEID-A-HVGGVNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQYIFEGHEAP 503 (1106)
Q Consensus 432 ~d~~v~iwd~~~~~~~~~~~~l~-~-h~~~V~~~~~s~d~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~h~~~ 503 (1106)
.+ .|.+||..+++... +.... + ....+.+++++|+|+ ++++... .+.|..+| +++.. .+..+...
T Consensus 108 ~~-gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~ 180 (326)
T 2ghs_A 108 DD-GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISI 180 (326)
T ss_dssp TT-EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESS
T ss_pred CC-CEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcc
Confidence 44 49999998876432 21111 1 123689999999998 4554432 24555555 45433 33334445
Q ss_pred eEEEeccccCCceEE-EEEecCCeEEEEeCC--CC-Cce--eEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCC
Q 001295 504 VYSVCPHHKENIQFI-FSTALDGKIKAWLYD--NL-GSR--VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 577 (1106)
Q Consensus 504 v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~--~~-~~~--~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~ 577 (1106)
...++|+++ ++.+ ++.+.++.|.+||+. ++ ... ..+.. +... ......+.++++
T Consensus 181 ~~~i~~s~d--g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~---------~~~~---------~~~p~gi~~d~~ 240 (326)
T 2ghs_A 181 PNSICFSPD--GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFID---------STGI---------KGGMDGSVCDAE 240 (326)
T ss_dssp EEEEEECTT--SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEE---------CTTS---------SSEEEEEEECTT
T ss_pred cCCeEEcCC--CCEEEEEECCCCEEEEEEcccccCCcccCceEEEE---------CCCC---------CCCCCeeEECCC
Confidence 678887654 4544 555567899999986 32 110 01100 0000 012334666667
Q ss_pred CCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEc-cCCCEEEEEeCC
Q 001295 578 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTND 631 (1106)
Q Consensus 578 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~d 631 (1106)
|++.++...++.|.+||. +++.+..+.... ..+.+++|+ ++++.|++++..
T Consensus 241 G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~--~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 241 GHIWNARWGEGAVDRYDT-DGNHIARYEVPG--KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp SCEEEEEETTTEEEEECT-TCCEEEEEECSC--SBEEEEEEESTTSCEEEEEEBC
T ss_pred CCEEEEEeCCCEEEEECC-CCCEEEEEECCC--CCcEEEEEecCCCCEEEEEecC
Confidence 766777667789999998 677777776543 358899998 888877665543
No 225
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.19 E-value=2.9e-10 Score=124.06 Aligned_cols=177 Identities=11% Similarity=0.033 Sum_probs=131.0
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEEccCCce--------eeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEE
Q 001295 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE--------VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 485 (1106)
Q Consensus 414 ~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~--------~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~i 485 (1106)
.++.+++++...++++|+.++ +++|++..... .... ....+.. |++++| |+. +|+++ .++.|++
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~--~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGD--QVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETT--EEEEE-ESSEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCC--EEEEE-cCCcEEE
Confidence 699999999999999999886 66699764331 1111 1224666 999999 887 67777 8899999
Q ss_pred EeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeee
Q 001295 486 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 565 (1106)
Q Consensus 486 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~ 565 (1106)
||+.+.........|...+.++.+.+. .+++++.||.|.+||+.+..... ...
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~~------------------- 163 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LAQ------------------- 163 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EEE-------------------
T ss_pred EEchhhhccCccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----ccC-------------------
Confidence 999887777777778888888775432 28889999999999998654321 111
Q ss_pred ccceeEEEEcCCCCEEEEEECCCeEEEEECCCcce--eEEEcc----C---CCCCCcCeEEEccCCCEEEEEe
Q 001295 566 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--LTSIDA----D---GGLPASPRIRFNKDGCLLAVST 629 (1106)
Q Consensus 566 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~----~---~~~~~v~~v~~s~~~~~l~~~~ 629 (1106)
.+.+++|+|+| ++.|..||.+++|+...++. ..++.. + .+...|.++.|.+++.++++-.
T Consensus 164 --~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 164 --NVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp --SEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred --CceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 45566666666 67899999999999887775 555621 1 1345799999999999888643
No 226
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.18 E-value=7.6e-09 Score=112.91 Aligned_cols=225 Identities=12% Similarity=-0.019 Sum_probs=145.6
Q ss_pred eEEEEEcCCCceE-EEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCE
Q 001295 746 ISRLIFTNSGNAI-LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 824 (1106)
Q Consensus 746 i~~~~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ 824 (1106)
..+.+|+|++..+ ++...++.|..|+... +...... ....+.+++++++|++
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~----------------------~~~~~~~-----~~~~v~~i~~~~dg~l 103 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLAS----------------------GRKTVHA-----LPFMGSALAKISDSKQ 103 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTT----------------------TEEEEEE-----CSSCEEEEEEEETTEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCC----------------------CcEEEEE-----CCCcceEEEEeCCCeE
Confidence 4577899975544 4444578888887542 2211110 2346899999999988
Q ss_pred EEEEeCCeEEEEEcCCCceeeeecC----CCCCeeEEEEecCCCceEEEeeC------CCcEEEEEeecceEEEEecCcc
Q 001295 825 VMSASGGKISLFNMMTFKTMATFMP----PPPAATFLAFHPQDNNIIAIGMD------DSSIQIYNVRVDEVKSKLKGHS 894 (1106)
Q Consensus 825 l~~~sdg~i~vwd~~~~~~~~~~~~----~~~~v~~l~~s~~d~~~la~g~~------dg~v~iwd~~~~~~~~~l~~h~ 894 (1106)
+++. ++.|.+||..+++....... ....+..++++| +++++++... .+.|+.++ +++.. .+..+.
T Consensus 104 ~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~ 178 (326)
T 2ghs_A 104 LIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADI 178 (326)
T ss_dssp EEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEE
T ss_pred EEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCC
Confidence 7765 45599999988775432221 123588999999 7877665432 24555555 55543 333344
Q ss_pred cCeeEEEEecCCCEEEE-EcCCCcEEEEeCC--Cc-ccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEE
Q 001295 895 KRITGLAFSHALNVLVS-SGADSQLCVWSSD--GW-EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAI 969 (1106)
Q Consensus 895 ~~V~~l~~s~d~~~l~s-~s~Dg~i~vwd~~--~~-~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i 969 (1106)
.....++|+||++.|+. .+.++.|.+|+++ ++ .......+...... ...+..++++++|.++++. .++.|.+
T Consensus 179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~---~~~p~gi~~d~~G~lwva~~~~~~v~~ 255 (326)
T 2ghs_A 179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGI---KGGMDGSVCDAEGHIWNARWGEGAVDR 255 (326)
T ss_dssp SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTS---SSEEEEEEECTTSCEEEEEETTTEEEE
T ss_pred cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCC---CCCCCeeEECCCCCEEEEEeCCCEEEE
Confidence 55789999999987654 4567889999986 54 32221222111111 1245789999999877775 5689999
Q ss_pred EecCCceEeeecccCCCCCCeeEEEEC-CCCCEEEEEEcC
Q 001295 970 FETTKLECVKQWVPRESSAPITHATFS-CDSQLVYACFLD 1008 (1106)
Q Consensus 970 ~d~~~~~~~~~~~~~~h~~~v~~l~~s-~d~~~l~t~s~D 1008 (1106)
||. +++.+..+. .+...+++++|+ +|++.|+.++..
T Consensus 256 ~d~-~g~~~~~i~--~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 256 YDT-DGNHIARYE--VPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp ECT-TCCEEEEEE--CSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred ECC-CCCEEEEEE--CCCCCcEEEEEecCCCCEEEEEecC
Confidence 998 566666655 335579999998 898877655543
No 227
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.17 E-value=1e-08 Score=123.15 Aligned_cols=203 Identities=12% Similarity=0.113 Sum_probs=135.9
Q ss_pred eEEEEecCCCceEEEeeCCC-------------------cEEEEEeecceEEEEecC--cc-------cCeeEEEEecCC
Q 001295 855 TFLAFHPQDNNIIAIGMDDS-------------------SIQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHAL 906 (1106)
Q Consensus 855 ~~l~~s~~d~~~la~g~~dg-------------------~v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~ 906 (1106)
..++++| ++.+|++++.++ .|..+|..+|+.+-.++. |. ....-+....+|
T Consensus 246 ~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG 324 (677)
T 1kb0_A 246 DSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAG 324 (677)
T ss_dssp SCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETT
T ss_pred cceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCC
Confidence 3578898 677777777664 499999999998877653 31 122223344577
Q ss_pred ---CEEEEEcCCCcEEEEeCCCcccccceeeccc--------CCC------------C-------CCCCCCceEEEcCCC
Q 001295 907 ---NVLVSSGADSQLCVWSSDGWEKQKNRFLQIP--------TGR------------T-------PTAQSDTRVQFHQDQ 956 (1106)
Q Consensus 907 ---~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~--------~~~------------~-------~~~~~i~~~~~s~dg 956 (1106)
..|+.++.+|.|.++|..+++.......... .+. . .....-..++|+|++
T Consensus 325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~ 404 (677)
T 1kb0_A 325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT 404 (677)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT
T ss_pred cEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC
Confidence 6899999999999999999876432211100 000 0 000011367899998
Q ss_pred cEEEEE-eC-------------------------------------------CeEEEEecCCceEeeecccCCCCCCeeE
Q 001295 957 IHFLVV-HE-------------------------------------------TQLAIFETTKLECVKQWVPRESSAPITH 992 (1106)
Q Consensus 957 ~~l~~~-~d-------------------------------------------~~v~i~d~~~~~~~~~~~~~~h~~~v~~ 992 (1106)
.++.+. .+ +.|..||+.+++.+-.+.. ..++..
T Consensus 405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~ 481 (677)
T 1kb0_A 405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH---VSPWNG 481 (677)
T ss_dssp TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE---SSSCCC
T ss_pred CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC---CCCCcC
Confidence 887763 21 6799999999998766643 334555
Q ss_pred EEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEE-EEeC-----------
Q 001295 993 ATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA-LGLS----------- 1060 (1106)
Q Consensus 993 l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~-t~~~----------- 1060 (1106)
..++.++.++++++.||.+++||..+|+.+..+. .+.+ +...-+.|.. +|+.++ +.+.
T Consensus 482 g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~----~~~~-----~~~~p~~y~~-~G~~~v~~~~G~~~~~~~~~~~ 551 (677)
T 1kb0_A 482 GTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP----TGTG-----VVAAPSTYMV-DGRQYVSVAVGWGGVYGLAARA 551 (677)
T ss_dssp CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE----CSSC-----CCSCCEEEEE-TTEEEEEEEECCCHHHHHHCCS
T ss_pred cceEeCCCEEEEECCCCcEEEEECCCCceeeeee----CCCC-----cccCCEEEEe-CCEEEEEEeccCCccccccccc
Confidence 5677788899999999999999999999999887 3333 2222456665 566544 3222
Q ss_pred -----CCcEEEEeecC
Q 001295 1061 -----DGGVHVFEPLE 1071 (1106)
Q Consensus 1061 -----Dg~v~vW~~~~ 1071 (1106)
.+.+.++.+..
T Consensus 552 ~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 552 TERQGPGTVYTFVVGG 567 (677)
T ss_dssp CSCCCCCEEEEEEETC
T ss_pred cccCCCCeEEEEeccc
Confidence 36788888874
No 228
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.16 E-value=4.3e-09 Score=126.35 Aligned_cols=80 Identities=11% Similarity=0.054 Sum_probs=59.8
Q ss_pred CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcc-cCeeEEEEecCCCEE
Q 001295 831 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVL 909 (1106)
Q Consensus 831 g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l 909 (1106)
|.|..||+.+++.+..+. +...+....++. ++.++++++.||.+++||..+|+++..+.... ....-+.|..+|+.+
T Consensus 457 g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~ 534 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVE-HVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY 534 (677)
T ss_dssp EEEEEEETTTTEEEEEEE-ESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred cEEEEEeCCCCcEEeecC-CCCCCcCcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEE
Confidence 679999999999887765 333445555666 66788889999999999999999998887443 333456777888755
Q ss_pred EEE
Q 001295 910 VSS 912 (1106)
Q Consensus 910 ~s~ 912 (1106)
+..
T Consensus 535 v~~ 537 (677)
T 1kb0_A 535 VSV 537 (677)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 229
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.14 E-value=5.7e-09 Score=126.83 Aligned_cols=242 Identities=11% Similarity=0.087 Sum_probs=157.7
Q ss_pred cccceEEEEEcCCCceEEEeec-----CceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEE
Q 001295 742 RATKISRLIFTNSGNAILALAS-----NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 816 (1106)
Q Consensus 742 ~~~~i~~~~~s~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l 816 (1106)
+...+..++|||||++++.+.+ +..|++||+. +|..+...+ .......+
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~----------------------tg~~~~~~~----~~~k~~~~ 180 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVE----------------------SKQPLETPL----KDVKFSGI 180 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETT----------------------TCSEEEEEE----EEEESCCC
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECC----------------------CCCCCcccc----CCceeccE
Confidence 4557889999999998885443 2467766655 444332211 11112567
Q ss_pred EEecCCCEEEEEe-CC-------------eEEEEEcCCCce----eeeecC-CCCCeeEEEEecCCCceEEEeeC----C
Q 001295 817 ALSKNDSYVMSAS-GG-------------KISLFNMMTFKT----MATFMP-PPPAATFLAFHPQDNNIIAIGMD----D 873 (1106)
Q Consensus 817 ~~s~~~~~l~~~s-dg-------------~i~vwd~~~~~~----~~~~~~-~~~~v~~l~~s~~d~~~la~g~~----d 873 (1106)
+|+ |++.|+.++ +. .|++|++.+... +..... +......+.||| |+++|+.... +
T Consensus 181 ~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~ 258 (693)
T 3iuj_A 181 SWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSG 258 (693)
T ss_dssp EEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSC
T ss_pred EEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCC
Confidence 899 999998887 53 399999987543 222333 444578899999 7887755432 2
Q ss_pred CcEEEEEeecce-EEEEecCcccCeeEEEEecCCCEEEE-EcCC---CcEEEEeCCCcccccceeecccCCCCCCCCCCc
Q 001295 874 SSIQIYNVRVDE-VKSKLKGHSKRITGLAFSHALNVLVS-SGAD---SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT 948 (1106)
Q Consensus 874 g~v~iwd~~~~~-~~~~l~~h~~~V~~l~~s~d~~~l~s-~s~D---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 948 (1106)
..|+++|+.++. ....+..+....... |+++|..|+. ...| +.|.+|++.+++......+.. +.. .+.
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~---~~~---~~~ 331 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP---ERQ---QVL 331 (693)
T ss_dssp CEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC---CCS---SCE
T ss_pred cEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec---CCC---CEE
Confidence 489999987763 455666677666665 6666666554 4443 579999998865432222221 111 223
Q ss_pred eEEEcCCCcEEEEE--eCC--eEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC----CeEEEEEcCCce
Q 001295 949 RVQFHQDQIHFLVV--HET--QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD----ATVCVFSAANLK 1020 (1106)
Q Consensus 949 ~~~~s~dg~~l~~~--~d~--~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D----g~i~vwd~~~~~ 1020 (1106)
.|++++++|+.. .++ .|++||+.++.. ..+.. .+...+..+.++++++.|+....+ ++|+.||+.+++
T Consensus 332 --~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-~~l~~-p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 332 --TVHSGSGYLFAEYMVDATARVEQFDYEGKRV-REVAL-PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp --EEEEETTEEEEEEEETTEEEEEEECTTSCEE-EEECC-SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred --EEEEECCEEEEEEEECCeeEEEEEECCCCee-EEeec-CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 899999988873 444 689999985543 33332 224567788889999887766555 889999998886
Q ss_pred eE
Q 001295 1021 LR 1022 (1106)
Q Consensus 1021 ~~ 1022 (1106)
..
T Consensus 408 ~~ 409 (693)
T 3iuj_A 408 IS 409 (693)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 230
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.14 E-value=7.7e-09 Score=111.81 Aligned_cols=229 Identities=12% Similarity=0.040 Sum_probs=151.0
Q ss_pred ccceEEEEEcCCCceE-EEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295 743 ATKISRLIFTNSGNAI-LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 821 (1106)
Q Consensus 743 ~~~i~~~~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 821 (1106)
.......+|+++++.| ++...++.|..|+.. +.... +.. +...+..++++++
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-----------------------g~~~~--~~~--~~~~~~gl~~d~d 96 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-----------------------GTVDV--LLD--ATAFTNGNAVDAQ 96 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-----------------------SCEEE--EEE--SCSCEEEEEECTT
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-----------------------CCEEE--EeC--CCCccceeeECCC
Confidence 3456788999999844 555557888888642 11110 000 3456889999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCceeeeec---CC-CCCeeEEEEecCCCceEEE----eeC-------------CCcEEEE
Q 001295 822 DSYVMSAS-GGKISLFNMMTFKTMATFM---PP-PPAATFLAFHPQDNNIIAI----GMD-------------DSSIQIY 879 (1106)
Q Consensus 822 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~---~~-~~~v~~l~~s~~d~~~la~----g~~-------------dg~v~iw 879 (1106)
|+++++.. ++.|.+|+.. ++...... +. ...+..+++++ +|+++++ |.. .+.|+.|
T Consensus 97 G~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~ 174 (305)
T 3dr2_A 97 QRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRL 174 (305)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEE
T ss_pred CCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEE
Confidence 99776655 5789999986 44322211 11 23467899999 8888886 432 2567777
Q ss_pred EeecceEEEEecCcccCeeEEEEecCCCEEEEEcCC------CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEc
Q 001295 880 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 953 (1106)
Q Consensus 880 d~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 953 (1106)
|..+++..... +....+.++|+||++.|+.+... +.|.+|++............... ...+..++++
T Consensus 175 d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~-----~~~pdgi~~d 247 (305)
T 3dr2_A 175 PPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVP-----DGLPDGFCVD 247 (305)
T ss_dssp CSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCS-----SSCCCSEEEC
T ss_pred cCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECC-----CCCCCeEEEC
Confidence 77666654333 44567889999999988777665 68999998764311111111111 1345789999
Q ss_pred CCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEE
Q 001295 954 QDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1012 (1106)
Q Consensus 954 ~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~ 1012 (1106)
++|++.++. .+.|.+|+.. ++.+..+... ..+.+++|+++++.|+.++.++..+
T Consensus 248 ~~G~lwv~~-~~gv~~~~~~-g~~~~~~~~~---~~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 248 RGGWLWSSS-GTGVCVFDSD-GQLLGHIPTP---GTASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp TTSCEEECC-SSEEEEECTT-SCEEEEEECS---SCCCEEEECTTSCEEEEEETTEEEE
T ss_pred CCCCEEEec-CCcEEEECCC-CCEEEEEECC---CceeEEEEeCCCCEEEEEcCCeEEE
Confidence 999955555 4569999984 6666666532 2589999999999988887665433
No 231
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.13 E-value=3.4e-08 Score=110.49 Aligned_cols=158 Identities=8% Similarity=0.043 Sum_probs=99.5
Q ss_pred CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccc-------cCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeE
Q 001295 423 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-------VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 495 (1106)
Q Consensus 423 dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h-------~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 495 (1106)
++..+.+++.++.|..+|..+|+.+-.. .+... ...+.+.... ++. .++.++.++.|..+|.++|+.+.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~-~~~--~v~v~~~~g~l~a~d~~tG~~~W 127 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSV-SLAEKDGWFSKEPALLSGGVTV-SGG--HVYIGSEKAQVYALNTSDGTVAW 127 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEE-ECCC---CCSCCCCCEEEEEEE-ETT--EEEEEETTSEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeee-cCccccccccccCcccccCceE-eCC--EEEEEcCCCEEEEEECCCCCEEE
Confidence 4667888888999999999999876432 12111 1223222222 334 46777889999999999999887
Q ss_pred EEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEc
Q 001295 496 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 575 (1106)
Q Consensus 496 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~ 575 (1106)
.............. . + ..++.++.++.|..+|..+++............ . ...... ....
T Consensus 128 ~~~~~~~~~~~p~~--~-~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~-~--~~~~~~-------------~~~~ 187 (376)
T 3q7m_A 128 QTKVAGEALSRPVV--S-D-GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL-S--LRGESA-------------PTTA 187 (376)
T ss_dssp EEECSSCCCSCCEE--E-T-TEEEEECTTSEEEEEETTTCCEEEEEECCC--------CCCCC-------------CEEE
T ss_pred EEeCCCceEcCCEE--E-C-CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce-e--ecCCCC-------------cEEE
Confidence 77644322221121 1 2 368888899999999999888776655432211 0 000000 0011
Q ss_pred CCCCEEEEEECCCeEEEEECCCcceeEEEcc
Q 001295 576 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 606 (1106)
Q Consensus 576 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 606 (1106)
+..++.+..++.|..+|..+|+.+.....
T Consensus 188 --~~~v~~g~~~g~l~~~d~~tG~~~w~~~~ 216 (376)
T 3q7m_A 188 --FGAAVVGGDNGRVSAVLMEQGQMIWQQRI 216 (376)
T ss_dssp --TTEEEECCTTTEEEEEETTTCCEEEEEEC
T ss_pred --CCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence 23577788899999999999988877653
No 232
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.12 E-value=2.6e-05 Score=91.94 Aligned_cols=503 Identities=10% Similarity=0.056 Sum_probs=258.3
Q ss_pred CcCeEEEEEccCCCEEEEEe-CCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC
Q 001295 412 GVSVNRVIWSPDGSLFGVAY-SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 490 (1106)
Q Consensus 412 ~~~V~~l~~spdg~~las~~-~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 490 (1106)
-.....|+|++.+..|..+. ..+.|..+++.+...... .+.........+++.+.+.. ++++-...+.|.+.++..
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~--v~~~~~~~P~GlAvD~~~~~-ly~~d~~~~~I~v~~~dG 115 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN--VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDG 115 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE--EECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE--EEeCCCCCcCeEEEEecCCE-EEEEeCCCCEEEEEECCC
Confidence 34578999999766665554 567899999876532111 22222356889999997765 566667788999999765
Q ss_pred CceeEEEeccCCCeEEEeccccCCceEEEEEe-cCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccce
Q 001295 491 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 569 (1106)
Q Consensus 491 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i 569 (1106)
......+.........+++.+.. |.++++-. ..+.|...+++.................+++.+++.
T Consensus 116 ~~~~~l~~~~l~~P~~Iavdp~~-g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~----------- 183 (619)
T 3s94_A 116 SLRKVLFWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQ----------- 183 (619)
T ss_dssp CSCEEEECSSCSCCCCEEEETTT-TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTT-----------
T ss_pred CCEEEEEeCCCCCCceEEEecCC-CeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCC-----------
Confidence 43333332344456677765442 34444442 235666555553322222222233344555554433
Q ss_pred eEEEEcCCCCEEEEE-ECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhh
Q 001295 570 GVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT 648 (1106)
Q Consensus 570 ~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 648 (1106)
.|+.+ ...+.|...|+............ ......+++..+ .++++-...+.|...|..++.. ...
T Consensus 184 ----------~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~-~~~ 249 (619)
T 3s94_A 184 ----------KLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG-LRE 249 (619)
T ss_dssp ----------EEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC-CEE
T ss_pred ----------EEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc-cEE
Confidence 44444 34567888887654333222211 223457787665 4444555677888888877632 111
Q ss_pred hcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCC-
Q 001295 649 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS- 727 (1106)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~- 727 (1106)
+..... .+ ..|.++......
T Consensus 250 i~~~~~-------------~p----------------------------------------------~~i~v~~~~~qp~ 270 (619)
T 3s94_A 250 IHSDIF-------------SP----------------------------------------------MDIHAFSQQRQPN 270 (619)
T ss_dssp CCSCCC-------------CC----------------------------------------------SEEEECCGGGSCC
T ss_pred EecCCC-------------CC----------------------------------------------cEEEEEccccCCC
Confidence 111000 00 011111110000
Q ss_pred CCccceecccCccccccceEEEEE-cCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCC
Q 001295 728 EPNQCRSLRLPENLRATKISRLIF-TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 806 (1106)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~i~~~~~-s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 806 (1106)
....|.. ..+....+++ +|.....-+.+.+|.. +
T Consensus 271 ~~n~C~~-------~ng~Cs~lCl~~~~~~~~~C~C~~g~~--------------------------------l------ 305 (619)
T 3s94_A 271 ATNPCGI-------DNGGCSHLCLMSPVKPFYQCACPTGVK--------------------------------L------ 305 (619)
T ss_dssp CCCTTTT-------TGGGCSSEEEECSSTTSEEEECCTTCC--------------------------------B------
T ss_pred ccccccC-------CCCcccceEECCCCCCCceEeCCchhe--------------------------------e------
Confidence 0000000 0011111222 1221111122222110 0
Q ss_pred CCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceee-eec-CCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecc
Q 001295 807 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMA-TFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 884 (1106)
Q Consensus 807 ~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~-~~~-~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~ 884 (1106)
.....+|. .....+|+.+..+.|+..++....... .+. ..-..+.+++|.+.++.++.+-...+.|+.+++...
T Consensus 306 --~~d~~~C~--~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~ 381 (619)
T 3s94_A 306 --LENGKTCK--DGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGS 381 (619)
T ss_dssp --CTTSSCBC--SSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred --cccCcccC--CCCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCC
Confidence 00011111 112346666777788888887654221 111 123457899999855666665556788999887754
Q ss_pred eEEEEecCcccCeeEEEEecCCC-EEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCC-CcEEEEE
Q 001295 885 EVKSKLKGHSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLVV 962 (1106)
Q Consensus 885 ~~~~~l~~h~~~V~~l~~s~d~~-~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d-g~~l~~~ 962 (1106)
.....+........+|++...+. +.++-+..+.|.+.+++.... ..+.. .+ -.....+++.|. |.+..+-
T Consensus 382 ~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~--~~l~~--~~----l~~P~~iavdp~~G~ly~tD 453 (619)
T 3s94_A 382 GSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMR--KILIS--ED----LEEPRAIVLDPMVGYMYWTD 453 (619)
T ss_dssp SCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEC--TT----CCSEEEEEEETTTTEEEEEE
T ss_pred ccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeE--EEEEE--CC----CCCeeeEEEEcCCCcEEEec
Confidence 33333333345678899987554 555556678899999876321 11111 11 135689999997 5544442
Q ss_pred --eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCceeEEeeCCCcccCCCCCCCC
Q 001295 963 --HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1039 (1106)
Q Consensus 963 --~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1106)
....|...++..... ..+. ...-.....|++++++..|+.+. ..+.|..++++.......+.. .+
T Consensus 454 ~g~~~~I~r~~~dG~~~-~~l~-~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~--~l-------- 521 (619)
T 3s94_A 454 WGEIPKIERAALDGSDR-VVLV-NTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVED--KI-------- 521 (619)
T ss_dssp CSSSCEEEEEETTSCSC-EEEE-CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEEC--CC--------
T ss_pred CCCCCEEEEEccCCCcc-EEEE-eCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEecc--CC--------
Confidence 236777777654332 2222 12245788999999777776664 447799999865433222210 01
Q ss_pred ccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295 1040 VHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus 1040 v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
-.|.+++... +.++++-...+.|..-+..+++
T Consensus 522 ~~P~glav~~--~~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 522 PHIFGFTLLG--DYVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp CSSCCEEEET--TEEEEECTTSSCEEEEESSSCC
T ss_pred CCcEEEEEEC--CEEEEeecCCCeEEEEEcCCCc
Confidence 1233566553 3455555556677777777765
No 233
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.12 E-value=7.3e-09 Score=124.67 Aligned_cols=79 Identities=13% Similarity=0.066 Sum_probs=59.5
Q ss_pred CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccC-eeEEEEecCCCEE
Q 001295 831 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALNVL 909 (1106)
Q Consensus 831 g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~~l 909 (1106)
|.|..||+.+++.+..+..+. .+..-.++. .+.++++|+.||.|+.||..+|+.+.+++...+. ..-+.|..||+..
T Consensus 455 g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy 532 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYVT-IFNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY 532 (689)
T ss_dssp EEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred eeEEEEECCCCCeEeEccCCC-CccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence 679999999999887776443 233335555 6678889999999999999999999888755433 2457788888754
Q ss_pred EE
Q 001295 910 VS 911 (1106)
Q Consensus 910 ~s 911 (1106)
++
T Consensus 533 v~ 534 (689)
T 1yiq_A 533 VT 534 (689)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 234
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.10 E-value=1.9e-08 Score=121.00 Aligned_cols=187 Identities=15% Similarity=0.154 Sum_probs=124.2
Q ss_pred EEEEecCCCceEEEeeCCCc-------------------EEEEEeecceEEEEecC--cc-------cCeeEEEEecCCC
Q 001295 856 FLAFHPQDNNIIAIGMDDSS-------------------IQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHALN 907 (1106)
Q Consensus 856 ~l~~s~~d~~~la~g~~dg~-------------------v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~~ 907 (1106)
.++++| +..++++++.++. |..||..+|+.+-.++. |. ..+.......+|+
T Consensus 239 ~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 239 SFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence 678998 6778888887764 99999999999877754 22 1122222333665
Q ss_pred ---EEEEEcCCCcEEEEeCCCcccccceeecc------------------------cCCC-------CCCCCCCceEEEc
Q 001295 908 ---VLVSSGADSQLCVWSSDGWEKQKNRFLQI------------------------PTGR-------TPTAQSDTRVQFH 953 (1106)
Q Consensus 908 ---~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~------------------------~~~~-------~~~~~~i~~~~~s 953 (1106)
.|+.++.+|.++++|..+++......+.. ..+. ......-..++|+
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d 397 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN 397 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence 78999999999999999987642111100 0000 0000012347899
Q ss_pred CCCcEEEEE-e---------------------------------------------CCeEEEEecCCceEeeecccCCCC
Q 001295 954 QDQIHFLVV-H---------------------------------------------ETQLAIFETTKLECVKQWVPRESS 987 (1106)
Q Consensus 954 ~dg~~l~~~-~---------------------------------------------d~~v~i~d~~~~~~~~~~~~~~h~ 987 (1106)
|+..++.+. . ++.|..||+.+++.+-.+.. .
T Consensus 398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~ 474 (689)
T 1yiq_A 398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY---V 474 (689)
T ss_dssp TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE---S
T ss_pred CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC---C
Confidence 988877763 1 36799999999998766653 2
Q ss_pred CCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEE
Q 001295 988 APITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1056 (1106)
Q Consensus 988 ~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~ 1056 (1106)
.++..-.++..+.++++|+.||.|+.||..+|+.+.++. ++.+ +...-+.|.. ||+.++
T Consensus 475 ~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~----~~~~-----~~~~p~ty~~-~G~qyv 533 (689)
T 1yiq_A 475 TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP----AASG-----VMAAPVTYSV-DGEQYV 533 (689)
T ss_dssp SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE----CSSC-----CCSCCEEEEE-TTEEEE
T ss_pred CCccCccceECCCEEEEECCCCcEEEEECCCCccceeee----CCCC-----cccCceEEEE-CCEEEE
Confidence 233334566678899999999999999999999998877 3433 2222366665 566543
No 235
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.09 E-value=4.8e-08 Score=106.26 Aligned_cols=238 Identities=10% Similarity=0.073 Sum_probs=152.2
Q ss_pred CCCceEEEeec-CceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-C
Q 001295 753 NSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G 830 (1106)
Q Consensus 753 ~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-d 830 (1106)
.+++++++.+. ++.|.++|+.+....+.... . .+ ...+.. -. .......+.++|+| +++++. +
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k--~-----ie--~~~~~~--~~---g~s~Ph~~~~~pdG-i~Vs~~g~ 157 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIK--V-----IE--PEEVKK--VS---GYSRLHTVHCGPDA-IYISALGN 157 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEE--E-----EC--HHHHHH--HH---CEEEEEEEEECSSC-EEEEEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeee--e-----ec--hhhccc--cc---CCCcccceeECCCe-EEEEcCCC
Confidence 77887776665 68899998753221111000 0 00 000000 00 11234567888999 666554 4
Q ss_pred ------CeEEEEEcCCCceeeeecCCCC---CeeEEEEecCCCceEEEee-------------------CCCcEEEEEee
Q 001295 831 ------GKISLFNMMTFKTMATFMPPPP---AATFLAFHPQDNNIIAIGM-------------------DDSSIQIYNVR 882 (1106)
Q Consensus 831 ------g~i~vwd~~~~~~~~~~~~~~~---~v~~l~~s~~d~~~la~g~-------------------~dg~v~iwd~~ 882 (1106)
|.|.++|..+++.+.++..... --..+-|+| +++.+++.. .+.+|.+||+.
T Consensus 158 ~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~ 236 (462)
T 2ece_A 158 EEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR 236 (462)
T ss_dssp TTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT
T ss_pred cCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC
Confidence 6899999999999988863322 234588899 888877774 36899999999
Q ss_pred cceEEEEecCc--ccCeeEEEE--ecCCCEEEEEcC------CCcEEEEeCCCcccccceeecccCCCCC----------
Q 001295 883 VDEVKSKLKGH--SKRITGLAF--SHALNVLVSSGA------DSQLCVWSSDGWEKQKNRFLQIPTGRTP---------- 942 (1106)
Q Consensus 883 ~~~~~~~l~~h--~~~V~~l~~--s~d~~~l~s~s~------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~---------- 942 (1106)
+++.+.++..- ......+.| +|+++++..++. +++|.+|..+.++......+.+......
T Consensus 237 ~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f 316 (462)
T 2ece_A 237 KRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPF 316 (462)
T ss_dssp TTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGG
T ss_pred CCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccccc
Confidence 99888887652 123445655 999999887774 5688887766543222222211110000
Q ss_pred --CCCCCceEEEcCCCcEEEEE--eCCeEEEEecC---CceEeeecccCCC------------CCCeeEEEECCCCCEEE
Q 001295 943 --TAQSDTRVQFHQDQIHFLVV--HETQLAIFETT---KLECVKQWVPRES------------SAPITHATFSCDSQLVY 1003 (1106)
Q Consensus 943 --~~~~i~~~~~s~dg~~l~~~--~d~~v~i~d~~---~~~~~~~~~~~~h------------~~~v~~l~~s~d~~~l~ 1003 (1106)
.......+.+|+||++|.++ ..+.|.+||+. +.+.+..+..++. ......+++||||++|+
T Consensus 317 ~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~Ly 396 (462)
T 2ece_A 317 KAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVY 396 (462)
T ss_dssp TEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEE
T ss_pred ccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEE
Confidence 01357899999999999996 56799999985 3456666654421 01368899999999999
Q ss_pred EEE
Q 001295 1004 ACF 1006 (1106)
Q Consensus 1004 t~s 1006 (1106)
++.
T Consensus 397 VaN 399 (462)
T 2ece_A 397 VTN 399 (462)
T ss_dssp EEC
T ss_pred EEc
Confidence 888
No 236
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.08 E-value=4.2e-08 Score=106.70 Aligned_cols=230 Identities=11% Similarity=0.122 Sum_probs=147.7
Q ss_pred cCCCEEEEEe--CCeEEEEEcCCC----ceeeeec-------CCCCCeeEEEEecCCCceEEEeeCC------CcEEEEE
Q 001295 820 KNDSYVMSAS--GGKISLFNMMTF----KTMATFM-------PPPPAATFLAFHPQDNNIIAIGMDD------SSIQIYN 880 (1106)
Q Consensus 820 ~~~~~l~~~s--dg~i~vwd~~~~----~~~~~~~-------~~~~~v~~l~~s~~d~~~la~g~~d------g~v~iwd 880 (1106)
+++++|++.+ ++.|.++|+.+. +...++. .....-..+.++| ++ +++++..+ |.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEE
Confidence 7889888887 689999999754 4445452 0112345678889 77 66666555 7899999
Q ss_pred eecceEEEEecCccc---CeeEEEEecCCCEEEEEc-------------------CCCcEEEEeCCCcccccceeecccC
Q 001295 881 VRVDEVKSKLKGHSK---RITGLAFSHALNVLVSSG-------------------ADSQLCVWSSDGWEKQKNRFLQIPT 938 (1106)
Q Consensus 881 ~~~~~~~~~l~~h~~---~V~~l~~s~d~~~l~s~s-------------------~Dg~i~vwd~~~~~~~~~~~~~~~~ 938 (1106)
..+++++.++..... --..+.|+|+++.+++.. .+.+|.+||+.+++... .+....
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~--tI~vg~ 248 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH--SLTLGE 248 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE--EEESCT
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee--EEecCC
Confidence 999999998863222 234588999999999885 36789999999854322 122210
Q ss_pred CCCCCCCCCceEEE--cCCCcEEEEE-------eCCeEEEEecCCceE--eeecccCC----------------CCCCee
Q 001295 939 GRTPTAQSDTRVQF--HQDQIHFLVV-------HETQLAIFETTKLEC--VKQWVPRE----------------SSAPIT 991 (1106)
Q Consensus 939 ~~~~~~~~i~~~~~--s~dg~~l~~~-------~d~~v~i~d~~~~~~--~~~~~~~~----------------h~~~v~ 991 (1106)
.. .....+.| +|+++++.++ .+++|.+|..+.++. ...+.... -.....
T Consensus 249 ~g----~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 249 EN----RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp TE----EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred CC----CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence 00 12345555 9999988873 345777665544321 11110000 024578
Q ss_pred EEEECCCCCEEEEEEc-CCeEEEEEcC---CceeEEeeCCCccc-----CCCCCCCCccceEEEEeCCCCCEEEEEe
Q 001295 992 HATFSCDSQLVYACFL-DATVCVFSAA---NLKLRCRINPSAYL-----PAGVSSSNVHPLVIAAHPQEPNEFALGL 1059 (1106)
Q Consensus 992 ~l~~s~d~~~l~t~s~-Dg~i~vwd~~---~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~d~~~l~t~~ 1059 (1106)
.|.+|+||++|+++.. .+.|.+||+. +.+++..+...... +.| ......|-.+.++| ||++|+++.
T Consensus 325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G-~~~~ggPr~~~lSp-DGk~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAG-HKLTGAPQMLEISR-DGRRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTS-CCCCSCCCCEEECT-TSSEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccc-ccCCCCCCEEEEcC-CCCEEEEEc
Confidence 8999999999987775 6899999985 34566555522110 000 00011355799999 789888887
No 237
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.05 E-value=7.3e-09 Score=112.96 Aligned_cols=249 Identities=11% Similarity=-0.025 Sum_probs=153.4
Q ss_pred eEEEEEeccC----cEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEe--------
Q 001295 364 TLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY-------- 431 (1106)
Q Consensus 364 ~llatg~~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-------- 431 (1106)
+++++...++ +|.+.|..+++.+.+.. .+. .+ .+++||||++|.++.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~------------------vG~-~P--~i~~spDg~~lyVan~~~~r~~~ 91 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSL------------------GAF-LS--LAVAGHSGSDFALASTSFARSAK 91 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEEE------------------ECT-TC--EEEECTTSSCEEEEEEEETTTTS
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEEEe------------------CCC-CC--ceEECCCCCEEEEEccccccccc
Confidence 3566655555 88899999999887522 232 24 799999999999886
Q ss_pred --CCCeEEEEEccCCceeeeeeeecc-c----cCCeeEEEEcCCCCceEEEEecCCCcEEE--EeCCCCceeEEEeccCC
Q 001295 432 --SRHIVQIYSYHGGDEVRQHLEIDA-H----VGGVNDIAFSHPNKQLCVITCGDDKTIKV--WDATNGAKQYIFEGHEA 502 (1106)
Q Consensus 432 --~d~~v~iwd~~~~~~~~~~~~l~~-h----~~~V~~~~~s~d~~~~~l~s~~~d~~i~i--wd~~~~~~~~~~~~h~~ 502 (1106)
.++.|.+||..+++.+..+. +.+ . ......++|+|||++++++..+.+..|.+ +|+.+ +.++..- +
T Consensus 92 G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~ 166 (368)
T 1mda_H 92 GKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-S 166 (368)
T ss_dssp SSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-S
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-C
Confidence 36889999999998876442 210 0 12467899999999632222233567888 99877 4444321 1
Q ss_pred CeEEEeccccCCceEEEEEecCCeEEEEeCCC----CCcee-----EeeCCCCeeEEEEEecCCCeEEEe----------
Q 001295 503 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDN----LGSRV-----DYEAPGRWCTTMAYSADGTRTYQG---------- 563 (1106)
Q Consensus 503 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----~~~~~-----~~~~~~~~v~~~~~s~~~~~~~~~---------- 563 (1106)
. ..+.+... ..+++.+.||.+.+.|+.+ ..... .+.....+. . .+++...+..
T Consensus 167 ~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~~~V~viD~ 238 (368)
T 1mda_H 167 C---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVASSILQGDI 238 (368)
T ss_dssp C---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBSSCCEEEEC
T ss_pred c---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcCCEEEEEEC
Confidence 1 11223333 3455666778777777765 11111 000001111 1 2222111100
Q ss_pred ----------------------eeccceeEEEEcCCCCEEEEEEC---------CCeEEEEECCCcceeEEEccCCCCCC
Q 001295 564 ----------------------FRKRSLGVVQFDTTKNRFLAAGD---------DFSIKFWDMDSVQLLTSIDADGGLPA 612 (1106)
Q Consensus 564 ----------------------~~~~~i~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~ 612 (1106)
........+.++|++++++.+.. ++.+.++|+.+++.+..+.... .
T Consensus 239 ~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~---~ 315 (368)
T 1mda_H 239 PAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH---D 315 (368)
T ss_dssp CSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE---E
T ss_pred CCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC---C
Confidence 00011122678999988887543 2456699999999988886543 3
Q ss_pred cCeEEEccCCC-EEEEEe-CCCcEEEEEccCCchhhhhhc
Q 001295 613 SPRIRFNKDGC-LLAVST-NDNGIKILATSDGIRLLRTFE 650 (1106)
Q Consensus 613 v~~v~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~ 650 (1106)
...++|+|||+ ++++.. .++.|.++|+.++ +.++.+.
T Consensus 316 p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I~ 354 (368)
T 1mda_H 316 SDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE 354 (368)
T ss_dssp ECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred cceEEECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEEE
Confidence 78899999998 455666 5899999999998 5555543
No 238
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.03 E-value=5.5e-05 Score=89.14 Aligned_cols=198 Identities=7% Similarity=0.006 Sum_probs=120.0
Q ss_pred CCeeEEEEecCCCEEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEE
Q 001295 811 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 888 (1106)
Q Consensus 811 ~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~ 888 (1106)
..+.+++|++.+..|..+. .+.|+.++.........+...-.....+++...++++..+-+..+.|.+.++.... ..
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~ 427 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RK 427 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EE
Confidence 4477899998777777665 58899999876444333333345677899987456666666677899999877543 23
Q ss_pred Ee-cCcccCeeEEEEecCCCEEEEEcC--CCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE--e
Q 001295 889 KL-KGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--H 963 (1106)
Q Consensus 889 ~l-~~h~~~V~~l~~s~d~~~l~s~s~--Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~ 963 (1106)
.+ ...-....+|++.|....|..+.. ...|...+++.... ..+. .... .....+++++++..|..+ .
T Consensus 428 ~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~--~~l~---~~~l---~~P~GlalD~~~~~LY~aD~~ 499 (619)
T 3s94_A 428 ILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR--VVLV---NTSL---GWPNGLALDYDEGKIYWGDAK 499 (619)
T ss_dssp EEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC--EEEE---CSSC---SCEEEEEEETTTTEEEEEETT
T ss_pred EEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc--EEEE---eCCC---CCCeeeEEcccCCEEEEEECC
Confidence 33 334456789999997555555543 35666666664321 1111 1111 245789999877766664 5
Q ss_pred CCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCce
Q 001295 964 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1020 (1106)
Q Consensus 964 d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~ 1020 (1106)
.+.|..+++..... +.+.. ........|++..+ .+.++-...+.|...|..+|.
T Consensus 500 ~~~I~~~~~dG~~~-~~~~~-~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 500 TDKIEVMNTDGTGR-RVLVE-DKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp TTEEEEEESSSCCC-EEEEE-CCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSCC
T ss_pred CCEEEEEecCCCce-EEEec-cCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCCc
Confidence 57899998865433 22211 11223345666433 333333345667777777763
No 239
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.02 E-value=8.5e-09 Score=113.14 Aligned_cols=177 Identities=14% Similarity=0.153 Sum_probs=108.4
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEE
Q 001295 418 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 497 (1106)
Q Consensus 418 l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 497 (1106)
..+..+|. |..++.++.|..|| .+++.+.. ...+...+.++...+++. +..++.+ |..+|. +++.+..+
T Consensus 25 ~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~---~~~~~~~~~~~~~~~~g~---l~v~t~~--l~~~d~-~g~~~~~~ 93 (330)
T 3hxj_A 25 PILAKNGT-IYLGSSNKNLYAIN-TDGSVKWF---FKSGEIIECRPSIGKDGT---IYFGSDK--VYAINP-DGTEKWRF 93 (330)
T ss_dssp CEECTTSC-EECSSTTTTTEEEC-TTSCEEES---SCGGGEEEECCEETTTTE---ECCSSCE--EEEECC-CGGGGGGS
T ss_pred ceEccCCe-EEEEcCCCEEEEEC-CCCcEEEE---EecCCCcccceEEecCCc---EEEecCc--EEEECC-CCcEEEEE
Confidence 34444554 55566788899999 77775432 333444567788877775 4445544 888985 66655444
Q ss_pred eccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCC
Q 001295 498 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 577 (1106)
Q Consensus 498 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~ 577 (1106)
...........+. + ..++.++.++.|..+|.. +............+.++...+++.
T Consensus 94 ~~~~~~~~~~~~~---~-~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~------------------- 149 (330)
T 3hxj_A 94 DTKKAIVSDFTIF---E-DILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT------------------- 149 (330)
T ss_dssp CC-----CCEEEE---T-TEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-------------------
T ss_pred ECCCCcccCceEE---C-CEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-------------------
Confidence 3322222222322 2 467788889999999987 555554444333333334433443
Q ss_pred CCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEE
Q 001295 578 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 638 (1106)
Q Consensus 578 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 638 (1106)
+..++.++.|..||.. ++.+..+.... ..+.++.+.+++.+++.. +.+..+|
T Consensus 150 ---l~vgt~~~~l~~~d~~-g~~~~~~~~~~--~~~~~~~~d~~g~l~v~t---~~l~~~d 201 (330)
T 3hxj_A 150 ---IYVGSNDNYLYAINPD-GTEKWRFKTND--AITSAASIGKDGTIYFGS---DKVYAIN 201 (330)
T ss_dssp ---EEEECTTSEEEEECTT-SCEEEEEECSS--CCCSCCEECTTCCEEEES---SSEEEEC
T ss_pred ---EEEEcCCCEEEEECCC-CCEeEEEecCC--CceeeeEEcCCCEEEEEe---CEEEEEC
Confidence 6777888999999998 77776665432 356677777777755443 6777776
No 240
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.00 E-value=0.00018 Score=84.81 Aligned_cols=505 Identities=8% Similarity=-0.054 Sum_probs=265.2
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEE-
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF- 427 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l- 427 (1106)
.-..+.+++|++.+..|+.+-..++.|..+++........ +...-.....+++.+.+..|
T Consensus 35 ~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v-------------------~~~g~~~P~GlAvD~~~~~LY 95 (628)
T 4a0p_A 35 GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHV-------------------VEFGLDYPEGMAVDWLGKNLY 95 (628)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-------------------ECSSCSCCCEEEEETTTTEEE
T ss_pred CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEE-------------------EeCCCCCcceEEEEeCCCEEE
Confidence 3457889999998877777777788999999875433211 11112356789998765555
Q ss_pred EEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEe-cCCCcEEEEeCCCCceeEEEeccCCCeEE
Q 001295 428 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIFEGHEAPVYS 506 (1106)
Q Consensus 428 as~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 506 (1106)
++-...+.|.+.++++..... + +...-.....|++.|.... ++++- +..+.|...++.... ...+.........
T Consensus 96 ~tD~~~~~I~v~~~dG~~~~~-l--~~~~l~~P~~iavdp~~G~-lY~tD~g~~~~I~r~~~dG~~-~~~l~~~~~~P~G 170 (628)
T 4a0p_A 96 WADTGTNRIEVSKLDGQHRQV-L--VWKDLDSPRALALDPAEGF-MYWTEWGGKPKIDRAAMDGSE-RTTLVPNVGRANG 170 (628)
T ss_dssp EEETTTTEEEEEETTSTTCEE-E--ECSSCCCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCS-CEEEECSCSSEEE
T ss_pred EEECCCCEEEEEecCCCcEEE-E--EeCCCCCcccEEEccCCCe-EEEeCCCCCCEEEEEeCCCCc-eEEEECCCCCcce
Confidence 444556889999987654221 1 2233345789999986664 33443 446778888865443 3333334456778
Q ss_pred EeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEEC
Q 001295 507 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 586 (1106)
Q Consensus 507 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 586 (1106)
+++.+.. +.+.++-...+.|...|++.... ..+.........+++. . +..+++-..
T Consensus 171 lalD~~~-~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~---------------------~-~~ly~tD~~ 226 (628)
T 4a0p_A 171 LTIDYAK-RRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQY---------------------Q-DYIYWTDWS 226 (628)
T ss_dssp EEEETTT-TEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEE---------------------T-TEEEEEETT
T ss_pred EEEcccc-CEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEE---------------------C-CEEEEecCC
Confidence 8876543 35555656678899888865333 2222111222233332 2 223334445
Q ss_pred CCeEEEEECCCcceeEEEccCCCCCCcCeEE-EccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCC
Q 001295 587 DFSIKFWDMDSVQLLTSIDADGGLPASPRIR-FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP 665 (1106)
Q Consensus 587 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~-~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (1106)
.+.|...|..+++....+.... .....+. +++..+. + .. .+... .+. .. .+
T Consensus 227 ~~~I~~~dk~tg~~~~~l~~~~--~~p~~i~v~~~~~q~---~------------~n-~C~~~-ng~-C~-------~~- 278 (628)
T 4a0p_A 227 RRSIERANKTSGQNRTIIQGHL--DYVMDILVFHSSRQS---G------------WN-ECASS-NGH-CS-------HL- 278 (628)
T ss_dssp TTEEEEEETTTCCSCEEEECSC--CSCCEEEEECGGGSC---C------------CC-TTTTT-GGG-CS-------SE-
T ss_pred CCEEEEEECCCCCceEEEecCC--CCcceeeeeeecccc---c------------ce-EeccC-CCC-cc-------hh-
Confidence 7888888887777666554321 1222332 2221110 0 00 11000 000 00 00
Q ss_pred CcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccc
Q 001295 666 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK 745 (1106)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 745 (1106)
++.. +.+.+. ..+..|. .+.. ..
T Consensus 279 C~~~----------------------------------~~~~~~-C~C~~g~----~l~~------------------d~ 301 (628)
T 4a0p_A 279 CLAV----------------------------------PVGGFV-CGCPAHY----SLNA------------------DN 301 (628)
T ss_dssp EEEE----------------------------------TTTEEE-EECSTTC----EECT------------------TS
T ss_pred hhcC----------------------------------CCCCee-EEcCCCc----Eecc------------------cC
Confidence 0000 000000 0000010 0000 00
Q ss_pred eEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEE
Q 001295 746 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV 825 (1106)
Q Consensus 746 i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l 825 (1106)
.++. .+ ..+++.+. ...|+-..+.... ... ....+. .-..+..++|++.+..|
T Consensus 302 ~~C~--~~-~~~Ll~s~-~~~i~~i~l~~~~-------------------~~~-~~l~~~---~~~~~~~ld~d~~~~~i 354 (628)
T 4a0p_A 302 RTCS--AP-TTFLLFSQ-KSAINRMVIDEQQ-------------------SPD-IILPIH---SLRNVRAIDYDPLDKQL 354 (628)
T ss_dssp SCEE--CC-SSEEEEEE-TTEEEEECCCTTC-------------------CCC-EECCCT---TCSCEEEEEEETTTTEE
T ss_pred CcCc--cc-cceeeeec-cceEEEEeccccc-------------------Cce-EEEEeh---hcCCceEEEEecCCCeE
Confidence 0011 01 22233332 2333322221100 000 000011 23457889999988888
Q ss_pred EEEe--CCeEEEEEcCCCceeeeecC------CCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEe-cCcccC
Q 001295 826 MSAS--GGKISLFNMMTFKTMATFMP------PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKR 896 (1106)
Q Consensus 826 ~~~s--dg~i~vwd~~~~~~~~~~~~------~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l-~~h~~~ 896 (1106)
..+. .+.|+.++.........+.. ....+..+++....+++..+-+..+.|.+.++. |+....+ ......
T Consensus 355 y~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~ 433 (628)
T 4a0p_A 355 YWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDR 433 (628)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCC
T ss_pred EEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCc
Confidence 7776 57898888765433233322 234688999998445566676778899999876 4444443 334567
Q ss_pred eeEEEEecCCCEEEEEcC-CC--cEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE--eCCeEEEEe
Q 001295 897 ITGLAFSHALNVLVSSGA-DS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFE 971 (1106)
Q Consensus 897 V~~l~~s~d~~~l~s~s~-Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~d~~v~i~d 971 (1106)
..+|++.|...+|..... .. .|...+++.... ..+.. .. . .....+++++++..|..+ ..+.|..++
T Consensus 434 Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~--~~l~~--~~-l---~~P~gla~D~~~~~LYw~D~~~~~I~~~~ 505 (628)
T 4a0p_A 434 PRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER--EVLFF--SG-L---SKPIALALDSRLGKLFWADSDLRRIESSD 505 (628)
T ss_dssp EEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC--EEEEC--SS-C---SCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc--EEEEe--cc-C---CCccEEEEeCCCCEEEEEeCCCCEEEEEe
Confidence 899999995444444332 22 455556654221 11111 11 1 245889999987777664 457899999
Q ss_pred cCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEee
Q 001295 972 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1025 (1106)
Q Consensus 972 ~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~ 1025 (1106)
+.... .+.+.. ........|++.. +...++-...+.|...|-.+|+....+
T Consensus 506 ~dG~~-r~~~~~-~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i 556 (628)
T 4a0p_A 506 LSGAN-RIVLED-SNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKV 556 (628)
T ss_dssp TTSCS-CEEEEC-SSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred CCCCc-eEEEEc-CCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEE
Confidence 86443 333321 2244567888754 444555555678888888777654443
No 241
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.94 E-value=4.4e-08 Score=107.40 Aligned_cols=218 Identities=13% Similarity=0.104 Sum_probs=133.4
Q ss_pred EEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCCC
Q 001295 355 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 434 (1106)
Q Consensus 355 ~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 434 (1106)
+..+..+|. +..|+.++.|..|| .+++.+.. ...+...+.++...++|.+++ ++.+
T Consensus 24 ~~~~d~~g~--l~v~t~~~~l~~~d-~~g~~~~~-------------------~~~~~~~~~~~~~~~~g~l~v-~t~~- 79 (330)
T 3hxj_A 24 SPILAKNGT--IYLGSSNKNLYAIN-TDGSVKWF-------------------FKSGEIIECRPSIGKDGTIYF-GSDK- 79 (330)
T ss_dssp CCEECTTSC--EECSSTTTTTEEEC-TTSCEEES-------------------SCGGGEEEECCEETTTTEECC-SSCE-
T ss_pred CceEccCCe--EEEEcCCCEEEEEC-CCCcEEEE-------------------EecCCCcccceEEecCCcEEE-ecCc-
Confidence 344556776 55667788999999 88876542 111233456777777776444 4444
Q ss_pred eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCC
Q 001295 435 IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKEN 514 (1106)
Q Consensus 435 ~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 514 (1106)
|..+|. +++.+.. +...........+. ++ .+..++.++.|..+|.. ++.......+...+.++.. ..+
T Consensus 80 -l~~~d~-~g~~~~~---~~~~~~~~~~~~~~-~~---~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~--~~~ 147 (330)
T 3hxj_A 80 -VYAINP-DGTEKWR---FDTKKAIVSDFTIF-ED---ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIV--SED 147 (330)
T ss_dssp -EEEECC-CGGGGGG---SCC-----CCEEEE-TT---EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE--CTT
T ss_pred -EEEECC-CCcEEEE---EECCCCcccCceEE-CC---EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEE--cCC
Confidence 888886 5554332 22222223334443 44 46777888999999988 8877776655555555553 334
Q ss_pred ceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEE
Q 001295 515 IQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWD 594 (1106)
Q Consensus 515 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 594 (1106)
+ .++.++.++.|..+|.. +.....+......+.++...+++ . +..++ +.|..||
T Consensus 148 g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g---------------------~-l~v~t--~~l~~~d 201 (330)
T 3hxj_A 148 G-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDG---------------------T-IYFGS--DKVYAIN 201 (330)
T ss_dssp S-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTC---------------------C-EEEES--SSEEEEC
T ss_pred C-EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCC---------------------E-EEEEe--CEEEEEC
Confidence 3 47778888999999987 55555554443334444443444 3 44455 7889999
Q ss_pred CCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEE
Q 001295 595 MDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 638 (1106)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 638 (1106)
.+++.+....... ..+.++...++|.+. +++.++.+..++
T Consensus 202 -~~g~~~~~~~~~~--~~~~~~~~~~~g~l~-v~t~~~gl~~~~ 241 (330)
T 3hxj_A 202 -PDGTEKWNFYAGY--WTVTRPAISEDGTIY-VTSLDGHLYAIN 241 (330)
T ss_dssp -TTSCEEEEECCSS--CCCSCCEECTTSCEE-EEETTTEEEEEC
T ss_pred -CCCcEEEEEccCC--cceeceEECCCCeEE-EEcCCCeEEEEC
Confidence 6777766665432 357788888877544 455666776665
No 242
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.92 E-value=3.2e-07 Score=102.56 Aligned_cols=235 Identities=10% Similarity=0.028 Sum_probs=146.4
Q ss_pred CCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCe---
Q 001295 822 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI--- 897 (1106)
Q Consensus 822 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V--- 897 (1106)
+..+++++ ++.|..+|..+++.+..............+. ++ .+++++.++.|+.+|..+|+.+..........
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DG-LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TT-EEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CC-EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 44555555 8999999999999887665443322223333 33 67778889999999999998887665432211
Q ss_pred --eEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCC--CCCceEEEcCCCcEEEEEeCCeEEEEecC
Q 001295 898 --TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA--QSDTRVQFHQDQIHFLVVHETQLAIFETT 973 (1106)
Q Consensus 898 --~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~s~dg~~l~~~~d~~v~i~d~~ 973 (1106)
...... +..++.++.++.|..+|..+++...........+..... ..+.....-.++..++.+.++.+..+|..
T Consensus 180 ~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~ 257 (376)
T 3q7m_A 180 GESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLR 257 (376)
T ss_dssp CCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETT
T ss_pred CCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECC
Confidence 222232 456777888999999999987654322221111100000 00111111124555555678999999999
Q ss_pred CceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCC
Q 001295 974 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1053 (1106)
Q Consensus 974 ~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~ 1053 (1106)
+++.+-... ......+.. ++..|+.++.++.|..+|..+|+.+-..... ... . .. ..... +.
T Consensus 258 tG~~~w~~~----~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~---~~~---~-~~--~~~~~---~~ 319 (376)
T 3q7m_A 258 SGQIMWKRE----LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDL---LHR---L-LT--SPVLY---NG 319 (376)
T ss_dssp TCCEEEEEC----CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTT---TTS---C-CC--CCEEE---TT
T ss_pred CCcEEeecc----CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeeccc---CCC---c-cc--CCEEE---CC
Confidence 998875543 223444444 4667888888999999999999987665411 111 0 11 11122 46
Q ss_pred EEEEEeCCCcEEEEeecCCCCccCCC
Q 001295 1054 EFALGLSDGGVHVFEPLESEGKWGVP 1079 (1106)
Q Consensus 1054 ~l~t~~~Dg~v~vW~~~~~~~~~~~~ 1079 (1106)
.|+.++.+|.|+++|..+++..|...
T Consensus 320 ~l~v~~~~g~l~~~d~~tG~~~~~~~ 345 (376)
T 3q7m_A 320 NLVVGDSEGYLHWINVEDGRFVAQQK 345 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 88889999999999999999666543
No 243
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.90 E-value=2.7e-07 Score=104.19 Aligned_cols=329 Identities=12% Similarity=0.082 Sum_probs=190.9
Q ss_pred eEEEEecCCCcEEEEeCCCCceeEEEec---------------------------------cCC-Ce-----EEEeccc-
Q 001295 472 LCVITCGDDKTIKVWDATNGAKQYIFEG---------------------------------HEA-PV-----YSVCPHH- 511 (1106)
Q Consensus 472 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~---------------------------------h~~-~v-----~~~~~~~- 511 (1106)
..|.|||..|.++|+-+.+++.++.+.- +.. .+ .....+.
T Consensus 16 ~~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t 95 (595)
T 1fwx_A 16 YGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFT 95 (595)
T ss_dssp EEEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEE
T ss_pred EEEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCC
Confidence 3688999999999999999888876641 000 11 1112111
Q ss_pred --cCCceEEEEEec-CCeEEEEeCCCCCceeEeeCC-CCeeEEEEE-e-cCCCeEEEeeeccceeEEEEcCCCCEEEEE-
Q 001295 512 --KENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAP-GRWCTTMAY-S-ADGTRTYQGFRKRSLGVVQFDTTKNRFLAA- 584 (1106)
Q Consensus 512 --~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~-s-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~- 584 (1106)
..||++++.+.. ++.|.+.|+++.+....+... ......+++ + |++++++.+.+.. +=+.++|..|...
T Consensus 96 ~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~----~p~~~dg~~l~~~~ 171 (595)
T 1fwx_A 96 EGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDE----TPLVNDGTNMEDVA 171 (595)
T ss_dssp TTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSC----EESSCSSSSTTCGG
T ss_pred CCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccc----cccCCCCccccccc
Confidence 235666666655 567999999988776644443 244666666 3 6666443332110 0112233222221
Q ss_pred ECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCC
Q 001295 585 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 664 (1106)
Q Consensus 585 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1106)
-.++.+.++|..+.+.+..+...+. ...++++|+|+++++.+.+..- + ..+.....
T Consensus 172 ~~~~~vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se~-------~-~~i~~~~~------------- 227 (595)
T 1fwx_A 172 NYVNVFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEK-------G-MTLPEMTA------------- 227 (595)
T ss_dssp GEEEEEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTC-------C-SSHHHHTC-------------
T ss_pred ccCceEEEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCccc-------C-cchhhccc-------------
Confidence 2356899999999998888875433 3568999999999998875321 0 00000000
Q ss_pred CCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCcccccc
Q 001295 665 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 744 (1106)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 744 (1106)
..-..+.+.+.....
T Consensus 228 ------------------------------------------------~~~d~v~V~~~~~~~----------------- 242 (595)
T 1fwx_A 228 ------------------------------------------------AEMDHIVVFNIAEIE----------------- 242 (595)
T ss_dssp ------------------------------------------------CSEEEEEEEEHHHHH-----------------
T ss_pred ------------------------------------------------cccceEEEeecccee-----------------
Confidence 000112222211000
Q ss_pred ceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCE
Q 001295 745 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 824 (1106)
Q Consensus 745 ~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ 824 (1106)
.+.++|+.... +.+.+.|..... +......++ -.....++.++|||++
T Consensus 243 -----~~v~~Gk~~~i----~~V~VID~~~~~--------------------~~~~~~~Ip---vg~~PhGv~~sPDGk~ 290 (595)
T 1fwx_A 243 -----KAIAAGDYQEL----NGVKVVDGRKEA--------------------SSLFTRYIP---IANNPHGCNMAPDKKH 290 (595)
T ss_dssp -----HHHHHTCSEEE----TTEEEEECSGGG--------------------CCSSEEEEE---EESSCCCEEECTTSSE
T ss_pred -----EeccCCCeeEE----CcEEEEeCcccC--------------------CceeEEEEe---cCCCceEEEEcCCCCE
Confidence 01122222211 224444433210 111000011 1234567999999999
Q ss_pred EEEEe--CCeEEEEEcCCCc------------eeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec-------
Q 001295 825 VMSAS--GGKISLFNMMTFK------------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV------- 883 (1106)
Q Consensus 825 l~~~s--dg~i~vwd~~~~~------------~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~------- 883 (1106)
+++++ +++|.++|+.+.+ ...... -......++|++ +|...++...|++|.+||+.+
T Consensus 291 v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g 368 (595)
T 1fwx_A 291 LCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAG 368 (595)
T ss_dssp EEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHT
T ss_pred EEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcc
Confidence 99887 6899999998653 222332 234578999999 776667778899999999987
Q ss_pred ---ceEEEEecCcccCe-----eEEEEecCCCEEEEEcC---CCcE----------EEEeCCCcc
Q 001295 884 ---DEVKSKLKGHSKRI-----TGLAFSHALNVLVSSGA---DSQL----------CVWSSDGWE 927 (1106)
Q Consensus 884 ---~~~~~~l~~h~~~V-----~~l~~s~d~~~l~s~s~---Dg~i----------~vwd~~~~~ 927 (1106)
.+.+.++..|..+- .++.++|||++|+++.. |+.+ .++|+.+++
T Consensus 369 ~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 369 EKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred cccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 56777776664421 23456899999998753 5432 788986654
No 244
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.90 E-value=5.3e-08 Score=109.95 Aligned_cols=237 Identities=12% Similarity=0.083 Sum_probs=160.4
Q ss_pred cCCCEEEEEe--CCeEEEEEcCCCceeeeecCC-CCCeeEEEE-e-cCCCceEEEee------------------CCCcE
Q 001295 820 KNDSYVMSAS--GGKISLFNMMTFKTMATFMPP-PPAATFLAF-H-PQDNNIIAIGM------------------DDSSI 876 (1106)
Q Consensus 820 ~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~-~~~v~~l~~-s-~~d~~~la~g~------------------~dg~v 876 (1106)
+||+++.+.. ++.|.+.|+.+.++...+.-. ......+++ + | +++++++++ .++.|
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceE
Confidence 4899999887 577999999999988754322 345788888 4 8 777887774 34589
Q ss_pred EEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCC--------------------------------------cE
Q 001295 877 QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS--------------------------------------QL 918 (1106)
Q Consensus 877 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg--------------------------------------~i 918 (1106)
.++|..+.+.+.++.--. .-..++++|||+++++.+.+. .|
T Consensus 178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 999999998888776322 346788999999999888653 35
Q ss_pred EEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE--eCCeEEEEecCCce------------EeeecccC
Q 001295 919 CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE------------CVKQWVPR 984 (1106)
Q Consensus 919 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~d~~v~i~d~~~~~------------~~~~~~~~ 984 (1106)
.|.|..+.+... ....+..+ ....++.++|||++++++ .+.+|.++|+.+.+ .+.....
T Consensus 257 ~VID~~~~~~~~-~~~~Ipvg-----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v- 329 (595)
T 1fwx_A 257 KVVDGRKEASSL-FTRYIPIA-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL- 329 (595)
T ss_dssp EEEECSGGGCCS-SEEEEEEE-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-
T ss_pred EEEeCcccCCce-eEEEEecC-----CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-
Confidence 555655421000 00111112 245889999999999985 56789999999763 3333332
Q ss_pred CCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCC----------ceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCE
Q 001295 985 ESSAPITHATFSCDSQLVYACFLDATVCVFSAAN----------LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNE 1054 (1106)
Q Consensus 985 ~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~ 1054 (1106)
......++|+|||...++...|+.|.+||+++ ...+.++..+ +.| ||. -....+..+| ||++
T Consensus 330 --G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~-yqp-Gh~---~~~~g~t~~~-DGk~ 401 (595)
T 1fwx_A 330 --GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-YQP-GHL---KTVMGETLDA-TNDW 401 (595)
T ss_dssp --CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-SCE-EEE---EETTTTSTTC-CSSE
T ss_pred --CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc-ccc-ccc---eeccceEeCC-CCCE
Confidence 45789999999994345566799999999987 4556666532 222 110 0111234567 7899
Q ss_pred EEEEeC---CCc----------EEEEeecCCC
Q 001295 1055 FALGLS---DGG----------VHVFEPLESE 1073 (1106)
Q Consensus 1055 l~t~~~---Dg~----------v~vW~~~~~~ 1073 (1106)
|+++.. |+- -.+.|++.++
T Consensus 402 l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 402 LVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp EEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred EEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 888763 332 1789997666
No 245
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.89 E-value=6.3e-10 Score=123.53 Aligned_cols=190 Identities=14% Similarity=0.127 Sum_probs=107.7
Q ss_pred CCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCC
Q 001295 863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTP 942 (1106)
Q Consensus 863 d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 942 (1106)
++..+++++.||.|+.||..+|+.+.++.. +.+.+..+..++..+++++.|+.|+.||..+++.............
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~-- 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV-- 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHH--
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc--
Confidence 456888899999999999999999988876 5666666777888888889999999999988765321111100000
Q ss_pred CCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeE
Q 001295 943 TAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1022 (1106)
Q Consensus 943 ~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~ 1022 (1106)
....++..++..++.+.++.++.||..+|+.+..+.. +. ...++|++..|++++.|+.|+.||..+|+.+
T Consensus 84 ----~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~--~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 84 ----QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSS--AF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELR 153 (369)
T ss_dssp ----TTCSCC-----CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred ----ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecC--CC----cccccccCCEEEEEecCCEEEEEECCCCCEE
Confidence 0011112344433336789999999999998766542 22 2456778899999999999999999999877
Q ss_pred EeeCCCcccCCCCCCCCccceEEEEeCCC---CCEEEEEeCCCcEEEEeecCCCCccCCC
Q 001295 1023 CRINPSAYLPAGVSSSNVHPLVIAAHPQE---PNEFALGLSDGGVHVFEPLESEGKWGVP 1079 (1106)
Q Consensus 1023 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~d---~~~l~t~~~Dg~v~vW~~~~~~~~~~~~ 1079 (1106)
..+....+ . ..++.. + ...+++++.||.|+.||..+++..|...
T Consensus 154 W~~~~~~~----------~--~~~~~~-~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 154 WNATYFDY----------A--ASLPED-DVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp CEEEEEEE----------C--CBCCCC-CTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EeEecccc----------c--CccccC-CccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 65541111 0 111221 1 1567778899999999999999777653
No 246
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.89 E-value=4.7e-10 Score=124.55 Aligned_cols=186 Identities=12% Similarity=0.022 Sum_probs=110.9
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccC-ee
Q 001295 821 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-IT 898 (1106)
Q Consensus 821 ~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~-V~ 898 (1106)
++..+++++ ||.|+.||..+++.+..+.. ..+.+..+.. ++.++++++.||.|+.||..+|+.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 566777777 89999999999999888876 4565655666 6778888889999999999999887776554321 11
Q ss_pred -EEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCce
Q 001295 899 -GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE 976 (1106)
Q Consensus 899 -~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~ 976 (1106)
+..+. ++..|++++.|+.|+.||..+++..... ..+ ....++|++..+++ +.++.|+.||.++++
T Consensus 85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~-----~~~-------~~~~~~p~~~~v~~~~~dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTL-----SSA-------FADSLSPSTSLLYLGRTEYTITMYDTKTRE 151 (369)
T ss_dssp TCSCC------CCCCEEEEEEEEECCC----------------------------------EEEEEEEEEEECCCSSSSS
T ss_pred cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEe-----cCC-------CcccccccCCEEEEEecCCEEEEEECCCCC
Confidence 11111 3457788888999999999998753211 111 12345667777776 578999999999998
Q ss_pred EeeecccCCCCCCeeEEEECCCC---CEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295 977 CVKQWVPRESSAPITHATFSCDS---QLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus 977 ~~~~~~~~~h~~~v~~l~~s~d~---~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
.+-.+.... ....+++.+. ..+++++.||.|+.||..+|+.+-+..
T Consensus 152 ~~W~~~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 152 LRWNATYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp CCCEEEEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EEEeEeccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 765543211 2233344432 567778899999999999999876654
No 247
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.77 E-value=4.6e-06 Score=99.93 Aligned_cols=167 Identities=14% Similarity=0.139 Sum_probs=111.9
Q ss_pred EEEEecCCCceEEEeeCCCc-------------------EEEEEeecceEEEEecC--cc-------cCeeEEEEecCCC
Q 001295 856 FLAFHPQDNNIIAIGMDDSS-------------------IQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHALN 907 (1106)
Q Consensus 856 ~l~~s~~d~~~la~g~~dg~-------------------v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~~ 907 (1106)
.+++++ +..+++.++.++. |.-+|..+|+.+-.++. |. .+.....+..+|+
T Consensus 234 ~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~ 312 (668)
T 1kv9_A 234 SMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK 312 (668)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence 478888 6678888877763 99999999998877654 32 2222233344775
Q ss_pred ---EEEEEcCCCcEEEEeCCCcccccceeecc---------cCCCC--------C-----------CCCCCceEEEcCCC
Q 001295 908 ---VLVSSGADSQLCVWSSDGWEKQKNRFLQI---------PTGRT--------P-----------TAQSDTRVQFHQDQ 956 (1106)
Q Consensus 908 ---~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~---------~~~~~--------~-----------~~~~i~~~~~s~dg 956 (1106)
.|+.++.+|.+.++|..+++......... ..+.. . ....-..++++|+.
T Consensus 313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~ 392 (668)
T 1kv9_A 313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT 392 (668)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence 68899999999999999987642111000 00000 0 00011237888887
Q ss_pred cEEEE-E------------------------------------eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCC
Q 001295 957 IHFLV-V------------------------------------HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS 999 (1106)
Q Consensus 957 ~~l~~-~------------------------------------~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~ 999 (1106)
..+.+ . .++.|..||+.+++.+-.... ..++....+...+
T Consensus 393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~~~~~t~g 469 (668)
T 1kv9_A 393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY---PTHWNGGTLSTAG 469 (668)
T ss_dssp TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETT
T ss_pred CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC---CCCCcCceeEeCC
Confidence 66654 1 127799999999998766543 2233333445578
Q ss_pred CEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295 1000 QLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus 1000 ~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
.++++++.|+.|++||..+|+.+.++.
T Consensus 470 g~vf~g~~dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 470 NLVFQGTAAGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCcccchhhhhhcChhheEec
Confidence 889999999999999999999998887
No 248
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.76 E-value=7.7e-07 Score=91.20 Aligned_cols=216 Identities=11% Similarity=0.024 Sum_probs=144.9
Q ss_pred ceeeeecCCCC--CeeEEEEecCCCceEEEeeC--CCcEEEEEeecceEEEEecCccc-CeeEEEEecCCCEE-EEEcCC
Q 001295 842 KTMATFMPPPP--AATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVDEVKSKLKGHSK-RITGLAFSHALNVL-VSSGAD 915 (1106)
Q Consensus 842 ~~~~~~~~~~~--~v~~l~~s~~d~~~la~g~~--dg~v~iwd~~~~~~~~~l~~h~~-~V~~l~~s~d~~~l-~s~s~D 915 (1106)
+.+.++. |.. ....++|++ ++.++++.+. ++.|+++|+.+++.+..+.-... ....+++. ++.| ++.-.+
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred eEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 4455554 433 357999999 6766655443 57999999999999888653221 22345554 4444 455567
Q ss_pred CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceEeeecccCCCCC---Cee
Q 001295 916 SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSA---PIT 991 (1106)
Q Consensus 916 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~~~~~~~~~h~~---~v~ 991 (1106)
+.+.++|..+.+..... ..+ . .....+++||+.++++ .++.|.++|.++.+.+..+....+.. .+.
T Consensus 86 ~~v~viD~~t~~v~~~i----~~g-~-----~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n 155 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNF----THQ-M-----KDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLN 155 (266)
T ss_dssp SEEEEEETTTTEEEEEE----ECC-S-----SSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred CEEEEEECCCCcEEEEE----ECC-C-----CCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccce
Confidence 89999999986653321 111 1 1234567788877775 56799999999999888877543322 366
Q ss_pred EEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccC----CCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEE
Q 001295 992 HATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLP----AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1067 (1106)
Q Consensus 992 ~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW 1067 (1106)
.+.|. +|+..+....++.|.+.|..+++.+..+......+ ..+ .....+..++|+|+...+++++...+.|++-
T Consensus 156 ele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~-~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i 233 (266)
T 2iwa_A 156 ELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGF-RDIDVLNGIAWDQENKRIFVTGKLWPKLFEI 233 (266)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTC-TTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred eEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccc-cccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence 88888 77555555467899999999999999987432110 010 1113445899999545577888888999999
Q ss_pred eecCCC
Q 001295 1068 EPLESE 1073 (1106)
Q Consensus 1068 ~~~~~~ 1073 (1106)
++...+
T Consensus 234 ~l~~~~ 239 (266)
T 2iwa_A 234 KLHLVR 239 (266)
T ss_dssp EEEECC
T ss_pred EEeccc
Confidence 987754
No 249
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.76 E-value=8.6e-07 Score=90.85 Aligned_cols=200 Identities=10% Similarity=0.042 Sum_probs=138.9
Q ss_pred CeeEEEEecCCCEEEEEe---CCeEEEEEcCCCceeeeecCCCC-CeeEEEEecCCCceEEEeeCCCcEEEEEeecceEE
Q 001295 812 AVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 887 (1106)
Q Consensus 812 ~v~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~-~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~ 887 (1106)
....++|++++.+.++.+ ++.|+++|+.+++.+..+..... ....+++. ++++.++...++.+.++|..+++.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 467899999875555543 47899999999999888653222 23345555 4566666677899999999999999
Q ss_pred EEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCe
Q 001295 888 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ 966 (1106)
Q Consensus 888 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~ 966 (1106)
.++..-.. ....+++||+.|+.+..+++|.++|..+.+.......... +.. ...+..+.|. +|+..+.. .++.
T Consensus 100 ~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~-~~p--~~~~nele~~-dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 100 KNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN-GHR--VIRLNELEYI-NGEVWANIWQTDC 173 (266)
T ss_dssp EEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET-TEE--CCCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC-Ccc--cccceeEEEE-CCEEEEecCCCCe
Confidence 88853311 2344667888777777889999999988665433222111 110 0124567777 77655554 5789
Q ss_pred EEEEecCCceEeeecccCC---------C--CCCeeEEEECCCCCEE-EEEEcCCeEEEEEcCCc
Q 001295 967 LAIFETTKLECVKQWVPRE---------S--SAPITHATFSCDSQLV-YACFLDATVCVFSAANL 1019 (1106)
Q Consensus 967 v~i~d~~~~~~~~~~~~~~---------h--~~~v~~l~~s~d~~~l-~t~s~Dg~i~vwd~~~~ 1019 (1106)
|.+.|..+++.+..+...+ + ......|+|+|+++.| +++....+|++.++...
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 9999999999988876431 0 1356899999998765 55557788998887654
No 250
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.76 E-value=3.9e-06 Score=100.64 Aligned_cols=81 Identities=15% Similarity=0.142 Sum_probs=55.0
Q ss_pred CCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEE
Q 001295 873 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 952 (1106)
Q Consensus 873 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 952 (1106)
+|.|..||+.+++.+-+...+. .+....+...+.+++.++.|+.|+.||.++++...... ...+. .-.-+.+
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~--~~~~~-----~~~p~~~ 508 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE--AQSGI-----VAAPMTF 508 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE--CSSCC-----CSCCEEE
T ss_pred cceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEec--CCCCc-----ccCceEE
Confidence 4889999999999887765433 34444556678899999999999999999987543222 12211 1134566
Q ss_pred cCCCcEEEE
Q 001295 953 HQDQIHFLV 961 (1106)
Q Consensus 953 s~dg~~l~~ 961 (1106)
..+|+..++
T Consensus 509 ~~~G~~yva 517 (668)
T 1kv9_A 509 ELAGRQYVA 517 (668)
T ss_dssp EETTEEEEE
T ss_pred EECCEEEEE
Confidence 678875444
No 251
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.73 E-value=0.00082 Score=84.67 Aligned_cols=224 Identities=8% Similarity=0.023 Sum_probs=125.9
Q ss_pred EEEEEeCCeEEEEEcCCCce--eeeecCCCCCeeEEEEecCCCceEEEeeCC----------------------------
Q 001295 824 YVMSASGGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDD---------------------------- 873 (1106)
Q Consensus 824 ~l~~~sdg~i~vwd~~~~~~--~~~~~~~~~~v~~l~~s~~d~~~la~g~~d---------------------------- 873 (1106)
-++..+++.++|..+.+... ++++. -...+..++++| ..+.++++..+
T Consensus 708 g~v~~~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1158)
T 3ei3_A 708 SLALANNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQE-VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSS 785 (1158)
T ss_dssp EEEEECSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEG-GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECC
T ss_pred cEEEEcCCceEEEEecccCCeeEEEEe-CCCCceEEEEcC-CCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccc
Confidence 45555566788888754322 22232 234678888888 55544433211
Q ss_pred ---------------------CcEEEEEeecceEEEEecC-cccCeeEEE---EecC-CCEEEEEc----------CCCc
Q 001295 874 ---------------------SSIQIYNVRVDEVKSKLKG-HSKRITGLA---FSHA-LNVLVSSG----------ADSQ 917 (1106)
Q Consensus 874 ---------------------g~v~iwd~~~~~~~~~l~~-h~~~V~~l~---~s~d-~~~l~s~s----------~Dg~ 917 (1106)
+.|++.|..+++.+..+.- ....+.+++ |..+ ..+|+.|. ..|.
T Consensus 786 ~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gr 865 (1158)
T 3ei3_A 786 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGR 865 (1158)
T ss_dssp CCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEE
T ss_pred cccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceE
Confidence 2366667666666554432 123345544 3332 46888775 3478
Q ss_pred EEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECC
Q 001295 918 LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSC 997 (1106)
Q Consensus 918 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~ 997 (1106)
|.++++..++... ......+ +.+.+++-- +| +|+++-..++++|++...+.++ .....+. .|..+....
T Consensus 866 i~vf~v~~~kL~l-v~~~~v~------g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~-~~~~~~~-~i~~~~l~~ 934 (1158)
T 3ei3_A 866 IVVFQYSDGKLQT-VAEKEVK------GAVYSMVEF-NG-KLLASINSTVRLYEWTTEKELR-TECNHYN-NIMALYLKT 934 (1158)
T ss_dssp EEEEEEETTEEEE-EEEEEES------SCEEEEEEE-TT-EEEEEETTEEEEEEECTTSCEE-EEEEECC-CSCEEEEEE
T ss_pred EEEEEEECCEEEE-EEEEEcC------CcCEEEeee-CC-EEEEEcCCEEEEEECCCCceEE-EEeeccc-cEEEEEEec
Confidence 9999997432211 1111111 345555432 34 6777778999999998665333 1111111 233333333
Q ss_pred CCCEEEEEEcCCeEEEEEc--CCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecC
Q 001295 998 DSQLVYACFLDATVCVFSA--ANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus 998 d~~~l~t~s~Dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
.+.+++.|..-..|.++.+ ..+++...-. ++.+ .+..++.|.. ...++.+..+|+|.+.+...
T Consensus 935 ~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~--D~~~-------~~vta~~~ld--~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 935 KGDFILVGDLMRSVLLLAYKPMEGNFEEIAR--DFNP-------NWMSAVEILD--DDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp ETTEEEEEESSBCEEEEEEETTTTEEEEEEE--CCSC-------BCEEEEEEEE--TTEEEEEETTSEEEEEEECT
T ss_pred cCCEEEEEEhhheEEEEEEEcCCCeEEEEEe--eccc-------ccEEEEEEEc--cCcEEEEcCCCcEEEEecCC
Confidence 5778888887777777554 4444432221 2222 3444788874 45888899999999998765
No 252
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.72 E-value=9.5e-06 Score=85.35 Aligned_cols=202 Identities=10% Similarity=-0.016 Sum_probs=132.6
Q ss_pred CeeEEEEecCCCEEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEE
Q 001295 812 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 889 (1106)
Q Consensus 812 ~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~ 889 (1106)
.+..+++++++..|..+. ++.|..++..+......+.........++++++++.++++-...+.|.++++........
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 467899999887777776 689999999865543333333356889999984455555556678999999864332222
Q ss_pred ecCcccCeeEEEEecCCCEEEEEcC---CCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE--eC
Q 001295 890 LKGHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE 964 (1106)
Q Consensus 890 l~~h~~~V~~l~~s~d~~~l~s~s~---Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~d 964 (1106)
..........++++|++..|..+.. .+.|..++++.... ..+.. .+ ......+++++++..|.++ ..
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~---~~~~~-~~----~~~P~gia~d~~~~~lyv~d~~~ 188 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR---RILAQ-DN----LGLPNGLTFDAFSSQLCWVDAGT 188 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC---EEEEC-TT----CSCEEEEEEETTTTEEEEEETTT
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc---EEEEE-CC----CCCCcEEEEcCCCCEEEEEECCC
Confidence 2222245689999997666655543 36788888765321 11111 11 1245789999988776664 56
Q ss_pred CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCceeEEeeC
Q 001295 965 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus 965 ~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s-~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
+.|.++|..+........ . ......+++. +..|+.+. ..+.|.++|..+++.+..+.
T Consensus 189 ~~I~~~~~~g~~~~~~~~--~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 189 HRAECLNPAQPGRRKVLE--G-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp TEEEEEETTEEEEEEEEE--C-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred CEEEEEecCCCceEEEec--C-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 789999998654433332 2 2334667654 45555554 56899999999999988876
No 253
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.68 E-value=0.0026 Score=78.00 Aligned_cols=533 Identities=11% Similarity=0.066 Sum_probs=273.0
Q ss_pred CCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEE
Q 001295 350 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 429 (1106)
Q Consensus 350 ~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 429 (1106)
...|.++....+|. |-.|+.+| +..||..+.+... + .......|.++.. .+| .|..
T Consensus 62 ~~~i~~i~~d~~g~--lWigT~~G-l~~yd~~~~~f~~--------------~-----~~~~~~~i~~i~~-~~g-~lWi 117 (758)
T 3ott_A 62 NTRIYCGVIIDNTY--LYMGTDNG-ILVYNYRADRYEQ--------------P-----ETDFPTDVRTMAL-QGD-TLWL 117 (758)
T ss_dssp SSCEEEEEEETTTE--EEEEETTE-EEEEETTTTEECC--------------C-----SCCCCSCEEEEEE-ETT-EEEE
T ss_pred CceEEEEEEcCCCc--EEEEeCCC-eEEEeCCCCEEEC--------------c-----ccCCCceEEEEEe-cCC-cEEE
Confidence 45789988888886 44455554 7889987653211 0 0111235777765 355 4555
Q ss_pred EeCCCeEEEEEccCCceeeeeeee-c-cccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEecc------C
Q 001295 430 AYSRHIVQIYSYHGGDEVRQHLEI-D-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH------E 501 (1106)
Q Consensus 430 ~~~d~~v~iwd~~~~~~~~~~~~l-~-~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h------~ 501 (1106)
++.+ -+..+|..+++... .... . -....|.++....+|. +.+ |..+ -+..+|..+++.. .+... .
T Consensus 118 gt~~-Gl~~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~--lWi-gt~~-Gl~~~~~~~~~~~-~~~~~~~~~~~~ 190 (758)
T 3ott_A 118 GALN-GLYTYQLQSRKLTS-FDTRRNGLPNNTIYSIIRTKDNQ--IYV-GTYN-GLCRYIPSNGKFE-GIPLPVHSSQSN 190 (758)
T ss_dssp EETT-EEEEEETTTCCEEE-ECHHHHCCSCSCEEEEEECTTCC--EEE-EETT-EEEEEETTTTEEE-EECCCCCTTCSS
T ss_pred EcCC-cceeEeCCCCeEEE-eccCCCCcCCCeEEEEEEcCCCC--EEE-EeCC-CHhhCccCCCceE-EecCCCcccccc
Confidence 6666 48888987754321 1000 0 1134688888887887 444 3333 4778887766532 22111 1
Q ss_pred CCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEE
Q 001295 502 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 581 (1106)
Q Consensus 502 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l 581 (1106)
..|.++.. +.++..|..|+. +-+..+|..+.... .+. . .....+.++....+|...
T Consensus 191 ~~i~~i~~--d~~~~~lWigt~-~Gl~~~~~~~~~~~-~~~-------~-------------l~~~~i~~i~~d~~g~lW 246 (758)
T 3ott_A 191 LFVNSLLE--DTTRQCVWIGTE-GYLFQYFPSTGQIK-QTE-------A-------------FHNNSIKSLALDGNGDLL 246 (758)
T ss_dssp CCEEEEEE--ETTTTEEEEEEE-EEEEEEETTTTEEE-EEE-------E-------------EEEEEEEEEEECTTCCEE
T ss_pred ceeEEEEE--ECCCCEEEEEEC-CCCeEEcCCCCeEE-ecc-------C-------------CCCCeEEEEEEcCCCCEE
Confidence 23777764 333344445553 45777776543211 110 0 001134555555555544
Q ss_pred EEEECCCeEEEEECCCcceeEEEccCC-----CCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhccccccc
Q 001295 582 LAAGDDFSIKFWDMDSVQLLTSIDADG-----GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDA 656 (1106)
Q Consensus 582 ~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 656 (1106)
.|+. +-+.+++..+++......... ....|.++....+|.+.+ |+..| +.++.. +. ..+.+
T Consensus 247 -igT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~-~~--~~~~~------- 312 (758)
T 3ott_A 247 -AGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRY-NS--ALQFI------- 312 (758)
T ss_dssp -EEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECC-CC---CEEE-------
T ss_pred -EEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-cccccc-CC--ceeEE-------
Confidence 4444 458888887665433221110 112466777777776554 44445 443321 11 00000
Q ss_pred ccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecc
Q 001295 657 SRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLR 736 (1106)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~ 736 (1106)
....
T Consensus 313 -----------------------------------------------------------------~~~~----------- 316 (758)
T 3ott_A 313 -----------------------------------------------------------------PISQ----------- 316 (758)
T ss_dssp -----------------------------------------------------------------EHHH-----------
T ss_pred -----------------------------------------------------------------eccc-----------
Confidence 0000
Q ss_pred cCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEE
Q 001295 737 LPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 816 (1106)
Q Consensus 737 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l 816 (1106)
.........|.++....+|...+. +.+| +..++...+... .+..+...... ..-....|.++
T Consensus 317 ~~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~~---------~~~~~~~~~~~-------~~l~~~~v~~i 378 (758)
T 3ott_A 317 ITGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGERH---------DAIWYRMGDKT-------YPLSHNRIRHI 378 (758)
T ss_dssp HSCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSCC---------CCEEECTTCSS-------SCCSCSCEEEE
T ss_pred CCCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeecccccccc---------eeEEeccCCcC-------CCCCCCceEEE
Confidence 000002245777877888875554 4555 444432211000 00001100000 00024568899
Q ss_pred EEecCCCEEEEEeCCeEEEEEcCCCceeeee--cC----CCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecc------
Q 001295 817 ALSKNDSYVMSASGGKISLFNMMTFKTMATF--MP----PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD------ 884 (1106)
Q Consensus 817 ~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~--~~----~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~------ 884 (1106)
....+|.+.+.. ++.|..||..+++...-. .. ....|.++.... ++++ -.|+..+-|.++|..+.
T Consensus 379 ~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~l-WigT~~~Gl~~~~~~~~~~~~~~ 455 (758)
T 3ott_A 379 YEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-AGQL-WISTCLGGIFVVDKHKLMQSTSG 455 (758)
T ss_dssp EECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-TSEE-EEEESSSCEEEEEHHHHHHCCSS
T ss_pred EECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-CCCE-EEEECCCceEEEccccccccCCc
Confidence 988888766544 678999998876543221 11 123578887766 5554 44666667888886531
Q ss_pred eEE--EEec---C-cccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcE
Q 001295 885 EVK--SKLK---G-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 958 (1106)
Q Consensus 885 ~~~--~~l~---~-h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~ 958 (1106)
... ..+. + ....|.++...++|.+.+.++..+-|..+|..+++.. ............+.++....+|.+
T Consensus 456 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~-----~~~~~~~~~~~~~~~i~~d~~g~l 530 (758)
T 3ott_A 456 QYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVT-----KLFADELTGEKSPNYLLCDEDGLL 530 (758)
T ss_dssp EEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEE-----EECTTTSCGGGCEEEEEECTTSCE
T ss_pred ceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceE-----EecCCCcCCCcccceEEECCCCCE
Confidence 111 1111 1 1235889999888887764443444888888764322 111111111134677888888887
Q ss_pred EEEEeCCeEEEEecCCceEeeecccCC-CCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCC
Q 001295 959 FLVVHETQLAIFETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSS 1037 (1106)
Q Consensus 959 l~~~~d~~v~i~d~~~~~~~~~~~~~~-h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1037 (1106)
.+.+ .+.+..||..+.+... +...+ ....|.++... +| .|..++..| |..+|..+.+... +. ++..
T Consensus 531 Wigt-~~Gl~~~~~~~~~~~~-~~~~gl~~~~i~~i~~~-~g-~lWi~t~~G-l~~~~~~~~~~~~-~~----~~~~--- 597 (758)
T 3ott_A 531 WVGF-HGGVMRINPKDESQQS-ISFGSFSNNEILSMTCV-KN-SIWVSTTNG-LWIIDRKTMDARQ-QN----MTNK--- 597 (758)
T ss_dssp EEEE-TTEEEEECC--CCCCB-CCCCC---CCEEEEEEE-TT-EEEEEESSC-EEEEETTTCCEEE-C------CCC---
T ss_pred EEEe-cCceEEEecCCCceEE-ecccCCCccceEEEEEC-CC-CEEEECCCC-eEEEcCCCceeEE-ec----CCCC---
Confidence 7665 4578899887665322 11111 13568888763 55 455555566 6678988776542 21 2221
Q ss_pred CCccceEEEEeCCCCCEEEEEeCCCcEEEEeecC
Q 001295 1038 SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus 1038 ~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
.+. ...+...|| .|..|+.+|- ..++...
T Consensus 598 -~~~--~~~~~~~~G-~l~fG~~~Gl-~~f~p~~ 626 (758)
T 3ott_A 598 -RFT--SLLFDPKED-CVYLGGADGF-GISHSNL 626 (758)
T ss_dssp -CCS--EEEEETTTT-EEEEECBSEE-EEEEC--
T ss_pred -cee--eeEEECCCC-cEEEecCCce-EEEChhh
Confidence 122 344444344 5666777774 5556543
No 254
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.66 E-value=1.4e-05 Score=93.54 Aligned_cols=196 Identities=9% Similarity=-0.086 Sum_probs=119.4
Q ss_pred EEEEecCCCEEEEEe-C----------------CeEEEEEcCCCceeeeecCC--C-------CCeeEEEEecCCC---c
Q 001295 815 CFALSKNDSYVMSAS-G----------------GKISLFNMMTFKTMATFMPP--P-------PAATFLAFHPQDN---N 865 (1106)
Q Consensus 815 ~l~~s~~~~~l~~~s-d----------------g~i~vwd~~~~~~~~~~~~~--~-------~~v~~l~~s~~d~---~ 865 (1106)
.++++++...+..+. + +.|..+|..+++.+..++.. . ....-+.... ++ +
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~-~G~~~~ 317 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPV-NGKMTP 317 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEE-TTEEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEeccc-CCcEEE
Confidence 456677666666554 2 25999999999988766432 1 1112223334 56 4
Q ss_pred eEEEeeCCCcEEEEEeecceEEEEecCcc-------------cCe--------------------------eEEEEecCC
Q 001295 866 IIAIGMDDSSIQIYNVRVDEVKSKLKGHS-------------KRI--------------------------TGLAFSHAL 906 (1106)
Q Consensus 866 ~la~g~~dg~v~iwd~~~~~~~~~l~~h~-------------~~V--------------------------~~l~~s~d~ 906 (1106)
+++.++.+|.++++|..+|+.+....-.. .+| ..++++|+.
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 397 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES 397 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence 67889999999999999998876653211 111 246788888
Q ss_pred CEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCC
Q 001295 907 NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES 986 (1106)
Q Consensus 907 ~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h 986 (1106)
.+|+....+....++..... ...+..- ......+..+|.+. ....++.|..||+.+++.+-.+...
T Consensus 398 g~~yv~~~~~~~~~~~~~~~---------~~~g~~~-~g~~~~~~~~~~~~--~~~~~g~l~a~D~~tG~~~W~~~~~-- 463 (571)
T 2ad6_A 398 RTLYAGLNHICMDWEPFMLP---------YRAGQFF-VGATLAMYPGPNGP--TKKEMGQIRAFDLTTGKAKWTKWEK-- 463 (571)
T ss_dssp TEEEEEEECEEEEEEECCCC---------CCTTSCC-CCEEEEEEECTTST--TSCCCEEEEEECTTTCCEEEEEEES--
T ss_pred CEEEEEchhccccccccccc---------cccCCcc-ccccceeccCcccc--CCCCCCeEEEEECCCCCEEEEecCC--
Confidence 88888887766665544321 0011000 00001122233221 0013578889999999887665432
Q ss_pred CCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295 987 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus 987 ~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
..+.+..+...+..++.++.||.|+.||..+|+.+.++.
T Consensus 464 -~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 464 -FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp -SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred -CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 222222233356677789999999999999999998887
No 255
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.64 E-value=1.1e-06 Score=88.55 Aligned_cols=201 Identities=10% Similarity=0.107 Sum_probs=131.4
Q ss_pred ceeeeecCCCCC--eeEEEEecCCCceEEEeeCCC--cEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEc-CCC
Q 001295 842 KTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG-ADS 916 (1106)
Q Consensus 842 ~~~~~~~~~~~~--v~~l~~s~~d~~~la~g~~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg 916 (1106)
+.++++. |... ...+.|+ ++.++.+.+.+| .|+++|+.+++.+..+.-. .........+++..|..+. .++
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEec-CCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCC
Confidence 3445553 4443 4788998 467777777776 9999999999998887643 3344433344455555544 588
Q ss_pred cEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceEeeecccCCCCCC---eeE
Q 001295 917 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAP---ITH 992 (1106)
Q Consensus 917 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~---v~~ 992 (1106)
.+.+||.++.+....... + .....+++|++.|+++ .++.|.++|..+.+.+..+.......+ +..
T Consensus 108 ~v~v~D~~t~~~~~ti~~----~-------~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNE 176 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNY----D-------GEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNE 176 (262)
T ss_dssp EEEEEETTTCCEEEEEEC----S-------SCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEE
T ss_pred EEEEEECccCcEEEEEEC----C-------CCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccce
Confidence 999999998765432221 1 1224455678777774 467899999999999888776433333 455
Q ss_pred EEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCC--CCCCCccceEEEEeCCCCCEEEEE
Q 001295 993 ATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG--VSSSNVHPLVIAAHPQEPNEFALG 1058 (1106)
Q Consensus 993 l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~d~~~l~t~ 1058 (1106)
+.|. +|+..+..-.+..|.+.|..+|+.+..+......+.. .....-.+-.|+|+|+...+++||
T Consensus 177 Le~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 177 LEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred eEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 7776 7765555556889999999999999998854333211 001111234899999544455555
No 256
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.63 E-value=1.4e-05 Score=93.20 Aligned_cols=166 Identities=13% Similarity=0.116 Sum_probs=104.2
Q ss_pred EEEEecCCCceEEEeeCC----------------CcEEEEEeecceEEEEecCcc----------cCeeEEEEe-cCC--
Q 001295 856 FLAFHPQDNNIIAIGMDD----------------SSIQIYNVRVDEVKSKLKGHS----------KRITGLAFS-HAL-- 906 (1106)
Q Consensus 856 ~l~~s~~d~~~la~g~~d----------------g~v~iwd~~~~~~~~~l~~h~----------~~V~~l~~s-~d~-- 906 (1106)
.+++.+ +..++..+..+ +.|.-+|..+|+.+-.++... .++. +... .+|
T Consensus 245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~ 322 (599)
T 1w6s_A 245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKA 322 (599)
T ss_dssp CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcE
Confidence 456777 55566666655 379999999999887665421 1121 2222 567
Q ss_pred -CEEEEEcCCCcEEEEeCCCcccccceeecc----------cCCC---------------------CCCCCCCceEEEcC
Q 001295 907 -NVLVSSGADSQLCVWSSDGWEKQKNRFLQI----------PTGR---------------------TPTAQSDTRVQFHQ 954 (1106)
Q Consensus 907 -~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~----------~~~~---------------------~~~~~~i~~~~~s~ 954 (1106)
+.++.++.+|.+.+.|..+++......+.. ..+. ......-..++|+|
T Consensus 323 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp 402 (599)
T 1w6s_A 323 RKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP 402 (599)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred EEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence 567889999999999999987643322110 0000 00000113567777
Q ss_pred CCcEEEEE----------------------------------------eCCeEEEEecCCceEeeecccCCCCCCeeEEE
Q 001295 955 DQIHFLVV----------------------------------------HETQLAIFETTKLECVKQWVPRESSAPITHAT 994 (1106)
Q Consensus 955 dg~~l~~~----------------------------------------~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~ 994 (1106)
+..++.+. ..+.|..||+.+++.+-..... .++..-.
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~ 479 (599)
T 1w6s_A 403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER---FAVWGGT 479 (599)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES---SCCCSBC
T ss_pred CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC---CCccCcc
Confidence 76665441 2367889999999876655421 1222111
Q ss_pred ECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295 995 FSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus 995 ~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
+...+.+++.++.||.++.||..+|+.+-++.
T Consensus 480 ~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 480 MATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eEecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 22356778889999999999999999998886
No 257
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.63 E-value=2.1e-06 Score=86.57 Aligned_cols=187 Identities=10% Similarity=0.077 Sum_probs=127.3
Q ss_pred CeeEEEEecCCCEEEEEe-CC--eEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEE
Q 001295 812 AVPCFALSKNDSYVMSAS-GG--KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 888 (1106)
Q Consensus 812 ~v~~l~~s~~~~~l~~~s-dg--~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~ 888 (1106)
....+.|+ ++.+..+++ +| .|+++|+++++.+..+.... ......+.++++++.+....++.+.+||..+.+.+.
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ 121 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVR 121 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEE
Confidence 34778898 666555555 55 89999999999998876433 343333333245666666678999999999999999
Q ss_pred EecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeE
Q 001295 889 KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQL 967 (1106)
Q Consensus 889 ~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v 967 (1106)
++.... ....+++|++.|+.+..++.|.++|..+.+......... .+..- ..+..+.|. +|+..+.. .++.|
T Consensus 122 ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~~--~~lNELe~~-~G~lyan~w~~~~I 194 (262)
T 3nol_A 122 SFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEEL--PELNELEWV-DGEIFANVWQTNKI 194 (262)
T ss_dssp EEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTSSEE
T ss_pred EEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCccc--cccceeEEE-CCEEEEEEccCCeE
Confidence 887533 223444678877777777889999999876543322211 11110 123346666 77766555 67899
Q ss_pred EEEecCCceEeeecccCCC----------CCCeeEEEECCCCCEEEEEEc
Q 001295 968 AIFETTKLECVKQWVPRES----------SAPITHATFSCDSQLVYACFL 1007 (1106)
Q Consensus 968 ~i~d~~~~~~~~~~~~~~h----------~~~v~~l~~s~d~~~l~t~s~ 1007 (1106)
.+.|.++++.+..+...+- ..-...|||+|+++.|+..+.
T Consensus 195 ~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 195 VRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 9999999999888765311 235688999999888776663
No 258
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.63 E-value=6.9e-07 Score=89.90 Aligned_cols=196 Identities=13% Similarity=0.078 Sum_probs=131.1
Q ss_pred eeeeecCCCCC--eeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeE--EEEecCCCEEEEEcCCCcE
Q 001295 843 TMATFMPPPPA--ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG--LAFSHALNVLVSSGADSQL 918 (1106)
Q Consensus 843 ~~~~~~~~~~~--v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~--l~~s~d~~~l~s~s~Dg~i 918 (1106)
.+.++. |... ...+.|+ ++.++.+.+.+|.|+++|+.+++.+..+ - ...... +++.. +++.+..-.++.+
T Consensus 45 Vv~~~p-hd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g-~~Ly~ltw~~~~v 118 (268)
T 3nok_A 45 IIREYP-HATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDG-ERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEE-CCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECS-SCEEEEESSSCEE
T ss_pred EEEEEc-CCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeC-CEEEEEEccCCEE
Confidence 445553 4333 4788887 4678888888999999999999988877 2 233444 44432 2444445568899
Q ss_pred EEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceEeeecccCCCCC---CeeEEE
Q 001295 919 CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSA---PITHAT 994 (1106)
Q Consensus 919 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~~~~~~~~~h~~---~v~~l~ 994 (1106)
.+||.++.+....... . + ....+++|++.|+++ .++.|.++|.++.+.+..+....+.. .+..+.
T Consensus 119 ~V~D~~Tl~~~~ti~~--~-~--------eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe 187 (268)
T 3nok_A 119 FTWSGMPPQRERTTRY--S-G--------EGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELE 187 (268)
T ss_dssp EEEETTTTEEEEEEEC--S-S--------CCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EEEECCcCcEEEEEeC--C-C--------ceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccE
Confidence 9999999765433221 1 1 123444678887775 57899999999999988887644433 345677
Q ss_pred ECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccC-----CCCCCCCccceEEEEeCCCCCEEEEE
Q 001295 995 FSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLP-----AGVSSSNVHPLVIAAHPQEPNEFALG 1058 (1106)
Q Consensus 995 ~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~d~~~l~t~ 1058 (1106)
|. +|+..+..-.+..|.+.|..+|+.+..+......+ ........ -.|+|+|..+++++||
T Consensus 188 ~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vl--NGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 188 CA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVL--NGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCE--EEEEECTTTCCEEEEE
T ss_pred Ee-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCce--EEEEEcCCCCEEEEeC
Confidence 76 77655555467899999999999999988542211 01011223 3899999666667766
No 259
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.63 E-value=1.7e-05 Score=92.80 Aligned_cols=83 Identities=10% Similarity=0.087 Sum_probs=54.3
Q ss_pred CCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEE
Q 001295 872 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 951 (1106)
Q Consensus 872 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 951 (1106)
.+|.|..||+.+++.+-++... ..+.+..+...+..++.++.|+.|+.||.++++..... ....+. .-..+.
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~--~~~~~~-----~~~p~~ 513 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNF--KMPSGG-----IGSPMT 513 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE--ECSSCC-----CSCCEE
T ss_pred CCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEE--eCCCCc-----EeeeEE
Confidence 3578999999999988776532 23334344445677888999999999999998764322 222111 113355
Q ss_pred EcCCCcEEEEE
Q 001295 952 FHQDQIHFLVV 962 (1106)
Q Consensus 952 ~s~dg~~l~~~ 962 (1106)
+..+|+.++..
T Consensus 514 ~~~~G~~yv~~ 524 (571)
T 2ad6_A 514 YSFKGKQYIGS 524 (571)
T ss_dssp EEETTEEEEEE
T ss_pred EEECCEEEEEE
Confidence 66888876663
No 260
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.60 E-value=2.6e-06 Score=85.72 Aligned_cols=184 Identities=9% Similarity=0.078 Sum_probs=125.4
Q ss_pred CCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeE--EEEecCCCceEEEeeCCCcEEEEEeecceEE
Q 001295 811 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATF--LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 887 (1106)
Q Consensus 811 ~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~--l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~ 887 (1106)
.....+.|+. +.+.++.+ +|.|+++|+++++.+..+ . ...... +++. ++++.+....++.+.+||..+.+.+
T Consensus 55 ~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~ 129 (268)
T 3nok_A 55 AFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRE 129 (268)
T ss_dssp CCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEE
T ss_pred cccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEE
Confidence 3346788873 44444444 789999999999998887 2 233433 5554 4566666778999999999999999
Q ss_pred EEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCe
Q 001295 888 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ 966 (1106)
Q Consensus 888 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~ 966 (1106)
.++..-. .=..++ +|++.|+.+..++.|.++|..+.+......... .+.. ...+..+.|. +|+..+.. .++.
T Consensus 130 ~ti~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~-~g~~--v~~lNeLe~~-dG~lyanvw~s~~ 202 (268)
T 3nok_A 130 RTTRYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL-RGQP--VELINELECA-NGVIYANIWHSSD 202 (268)
T ss_dssp EEEECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEE-TTEE--CCCEEEEEEE-TTEEEEEETTCSE
T ss_pred EEEeCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC-CCcc--cccccccEEe-CCEEEEEECCCCe
Confidence 9987532 223444 678888888788999999999876544322221 1110 0123456666 77655555 6789
Q ss_pred EEEEecCCceEeeecccCC-----------CCCCeeEEEECCCCCEEEEEE
Q 001295 967 LAIFETTKLECVKQWVPRE-----------SSAPITHATFSCDSQLVYACF 1006 (1106)
Q Consensus 967 v~i~d~~~~~~~~~~~~~~-----------h~~~v~~l~~s~d~~~l~t~s 1006 (1106)
|.+.|.++++.+..+...+ -..-...||++|+++.|+..+
T Consensus 203 I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 203 VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 9999999999988876431 123568899999877665554
No 261
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.54 E-value=0.00022 Score=83.50 Aligned_cols=397 Identities=10% Similarity=0.021 Sum_probs=200.1
Q ss_pred CCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCC-------eeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEE
Q 001295 424 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGG-------VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 496 (1106)
Q Consensus 424 g~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~-------V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 496 (1106)
+..+.+++.++.|.-+|..+|+.+-.... ...... -..+++ .+. .++.++.|+.|..+|.++|+.+..
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~-~~~~~~~~~~~~~~~g~a~--~~~--~v~~~t~dg~l~AlD~~TG~~~W~ 142 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNH-RLPDDIRPCCDVVNRGAAI--YGD--KVFFGTLDASVVALNKNTGKVVWK 142 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEEC-CCCTTCCCSSCSCCCCCEE--ETT--EEEEEETTTEEEEEESSSCCEEEE
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcC-CCCcccccccccCCCccEE--ECC--EEEEEeCCCEEEEEECCCCCEEee
Confidence 34455555544488899999987653321 111000 012223 233 467778899999999999999877
Q ss_pred EeccCC----CeE-EEecccc-CCce-EEEEEe------cCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEe
Q 001295 497 FEGHEA----PVY-SVCPHHK-ENIQ-FIFSTA------LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 563 (1106)
Q Consensus 497 ~~~h~~----~v~-~~~~~~~-~~~~-~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~ 563 (1106)
...... .+. +..+... .+++ .+++++ .++.|..+|..+++.+.........+ .|++...+..
T Consensus 143 ~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~-----~p~~~~~~~~ 217 (582)
T 1flg_A 143 KKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHM-----GRLNGKDSTV 217 (582)
T ss_dssp EECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCE-----EEETTEEEEE
T ss_pred ecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCcccc-----ccccCccccc
Confidence 654321 111 0011111 1222 566655 37999999999988877654322111 1111111100
Q ss_pred -----------e--------------eccceeEEEEcCCCCEEEEEEC--------------------C----CeEEEEE
Q 001295 564 -----------F--------------RKRSLGVVQFDTTKNRFLAAGD--------------------D----FSIKFWD 594 (1106)
Q Consensus 564 -----------~--------------~~~~i~~~~~~~~~~~l~~~~~--------------------d----~~i~iwd 594 (1106)
. ........+++|....++.+.. | +.|..+|
T Consensus 218 ~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD 297 (582)
T 1flg_A 218 TGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVD 297 (582)
T ss_dssp SSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEEC
T ss_pred ccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEe
Confidence 0 0011123567777777776653 2 6899999
Q ss_pred CCCcceeEEEccCCCC----CCcCe-EEEc---cCCC---EEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCC
Q 001295 595 MDSVQLLTSIDADGGL----PASPR-IRFN---KDGC---LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 663 (1106)
Q Consensus 595 ~~~~~~~~~~~~~~~~----~~v~~-v~~s---~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (1106)
..+|+.+-.++...+. ..+.. +.+. .+|+ .++.++.+|.++++|..+++ .+-.+..... +..
T Consensus 298 ~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~-~lw~~~~~~~-~~~----- 370 (582)
T 1flg_A 298 PSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGK-LQNAFPFVDN-ITW----- 370 (582)
T ss_dssp TTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCC-EEEEEESSSC-CCS-----
T ss_pred CCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCC-EecccccccC-ccc-----
Confidence 9999999887643221 01111 2222 4674 78889999999999999983 3322211100 000
Q ss_pred CCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccc
Q 001295 664 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA 743 (1106)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 743 (1106)
.. + +.. ....+... ..+. +. .+.. .+ ......+..|.....
T Consensus 371 ---~~--~-------~~~---~~g~p~~~-~~~~------~~--~~~~--~~-------------~~~~~~~~~P~~~Gg 411 (582)
T 1flg_A 371 ---AS--H-------IDL---KTGRPVER-EGQR------PP--LPEP--GQ-------------KHGKAVEVSPPFLGG 411 (582)
T ss_dssp ---EE--E-------ECT---TTCCEEEC-TTCS------CC--CCCT--TC-------------SSCCCEEESSCTTCS
T ss_pred ---cc--c-------ccc---cCCCEeEc-cccC------Cc--cccc--cc-------------cCCCceEECcCCccc
Confidence 00 0 000 00000000 0000 00 0000 00 000000011110011
Q ss_pred cceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCC
Q 001295 744 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 823 (1106)
Q Consensus 744 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~ 823 (1106)
..-..++++|+...+++...+-...++.... ....| ....-..+...|++.
T Consensus 412 ~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~------------------~~~~g-----------~~~~g~~~~~~p~~~ 462 (582)
T 1flg_A 412 KNWNPMAYSQDTGLFYVPANHWKEDYWTEEV------------------SYTKG-----------SAYLGMGFRIKRMYD 462 (582)
T ss_dssp SCSSCCEECTTTCCEEEEEECEEEEEEECCC------------------CCCTT-----------SCCCCEEEEEEESCS
T ss_pred cCCCCceECCCCCEEEEechhcceeeecccc------------------cccCC-----------CceeccceeecCCCC
Confidence 1123568888887777776665444443210 00011 100011122223310
Q ss_pred EEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCe-eEEEE
Q 001295 824 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI-TGLAF 902 (1106)
Q Consensus 824 ~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~ 902 (1106)
..+|.|..||+.+++.+....... .+..-.+.. .+.++++|+.||.++.||..+|+.+.+++.....+ .-+.|
T Consensus 463 ----~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y 536 (582)
T 1flg_A 463 ----DHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITW 536 (582)
T ss_dssp ----SCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred ----CCcceEEEEECCCCCEEEEecCCC-CCcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEE
Confidence 115889999999998876654322 222212222 35577779999999999999999998887654322 23677
Q ss_pred ecCCCEEEE
Q 001295 903 SHALNVLVS 911 (1106)
Q Consensus 903 s~d~~~l~s 911 (1106)
..||+..++
T Consensus 537 ~~~G~qYv~ 545 (582)
T 1flg_A 537 EQDGEQYLG 545 (582)
T ss_dssp EETTEEEEE
T ss_pred EECCEEEEE
Confidence 778874443
No 262
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.52 E-value=0.0084 Score=75.59 Aligned_cols=215 Identities=11% Similarity=0.098 Sum_probs=121.8
Q ss_pred cCccccCCCCCCcccc-ccCCCCCCCCeeEEEEe---c-CCCEEEEEe-----------CCeEEEEEcCCCceeeee-cC
Q 001295 787 VAPQLWQPPSGIMMTN-DVTDSNPEEAVPCFALS---K-NDSYVMSAS-----------GGKISLFNMMTFKTMATF-MP 849 (1106)
Q Consensus 787 ~~~~~w~~~~~~~~~~-~~~~~~~~~~v~~l~~s---~-~~~~l~~~s-----------dg~i~vwd~~~~~~~~~~-~~ 849 (1106)
..+++.|+.+...+.. .+. ....+.+++.- . ...++++|. .|.|.+|++..++..... ..
T Consensus 807 s~i~lidp~t~~~i~~~~l~---~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~ 883 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFL---QNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKE 883 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECC---TTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEeCCCCeEEEEEeCC---CCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEE
Confidence 3456667666554322 222 34455555532 2 246888773 256999998754332111 12
Q ss_pred CCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccc
Q 001295 850 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ 929 (1106)
Q Consensus 850 ~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~ 929 (1106)
..+.|++++-- +|++||.. ...|++|++...+.+..-..+-..|..+.....+.+++.|+.-..|.+..++..+
T Consensus 884 v~g~v~al~~~--~g~Lla~i--g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~-- 957 (1158)
T 3ei3_A 884 VKGAVYSMVEF--NGKLLASI--NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPME-- 957 (1158)
T ss_dssp ESSCEEEEEEE--TTEEEEEE--TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTT--
T ss_pred cCCcCEEEeee--CCEEEEEc--CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCC--
Confidence 35678888755 45555533 5789999998765333111122224433443457899999988888877654322
Q ss_pred cceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCc----------eEeeecccCCCCCCeeEEE---EC
Q 001295 930 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL----------ECVKQWVPRESSAPITHAT---FS 996 (1106)
Q Consensus 930 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~----------~~~~~~~~~~h~~~v~~l~---~s 996 (1106)
...........+ ..++++.|-.++.++++-.++.+.++..... .....+. ....|+++. +.
T Consensus 958 -~~L~~~a~D~~~--~~vta~~~ld~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fh---lG~~vt~~~~~sl~ 1031 (1158)
T 3ei3_A 958 -GNFEEIARDFNP--NWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFH---LGEFVNVFCHGSLV 1031 (1158)
T ss_dssp -TEEEEEEECCSC--BCEEEEEEEETTEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEE---CSSCEEEEEECCSC
T ss_pred -CeEEEEEeeccc--ccEEEEEEEccCcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEe---CCCcEeeEEeeeee
Confidence 122222222222 4678888877776666567788888765431 1122222 155677776 33
Q ss_pred CC---------CCEEEEEEcCCeEEEEEc
Q 001295 997 CD---------SQLVYACFLDATVCVFSA 1016 (1106)
Q Consensus 997 ~d---------~~~l~t~s~Dg~i~vwd~ 1016 (1106)
+. ...++.++.+|.|.+.-.
T Consensus 1032 ~~~~~~~~~~~~~~il~~T~~GsIg~l~p 1060 (1158)
T 3ei3_A 1032 MQNLGETSTPTQGSVLFGTVNGMIGLVTS 1060 (1158)
T ss_dssp CC-------CEEEEEEEEETTSCEEEEEE
T ss_pred cCCCccccccccceEEEEecCCEEEEEEE
Confidence 32 234777888999888743
No 263
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.50 E-value=0.00011 Score=77.04 Aligned_cols=223 Identities=11% Similarity=0.039 Sum_probs=137.4
Q ss_pred CCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEE
Q 001295 351 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 430 (1106)
Q Consensus 351 ~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 430 (1106)
..+.+++|++++.+|+++-..++.|.+++..++.... +....-.....++++|++..|..+
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~-------------------~~~~~~~~p~~ia~d~~~~~lyv~ 96 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT-------------------IIRQDLGSPEGIALDHLGRTIFWT 96 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE-------------------EECTTCCCEEEEEEETTTTEEEEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE-------------------EEECCCCCccEEEEEecCCeEEEE
Confidence 4578999999887777777777899999987654321 111222467899999976655554
Q ss_pred -eCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecC--CCcEEEEeCCCCceeEEEe-ccCCCeEE
Q 001295 431 -YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--DKTIKVWDATNGAKQYIFE-GHEAPVYS 506 (1106)
Q Consensus 431 -~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~-~h~~~v~~ 506 (1106)
...+.|.+++.+.... ..+ ..........++++|++.. ++++... .+.|..+++.. .....+. ........
T Consensus 97 d~~~~~I~~~~~~g~~~-~~~--~~~~~~~P~~i~vd~~~g~-lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~g 171 (267)
T 1npe_A 97 DSQLDRIEVAKMDGTQR-RVL--FDTGLVNPRGIVTDPVRGN-LYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNG 171 (267)
T ss_dssp ETTTTEEEEEETTSCSC-EEE--ECSSCSSEEEEEEETTTTE-EEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEE
T ss_pred ECCCCEEEEEEcCCCCE-EEE--EECCCCCccEEEEeeCCCE-EEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcE
Confidence 4568899999875432 211 1112245789999997764 3344332 46888888653 3333332 23345678
Q ss_pred EeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEE-
Q 001295 507 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG- 585 (1106)
Q Consensus 507 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~- 585 (1106)
++++++. +.+.++....+.|..+|+........... .... ..++.. +..++.+.
T Consensus 172 ia~d~~~-~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P---------------------~gi~~d--~~~lyva~~ 226 (267)
T 1npe_A 172 LTFDAFS-SQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYP---------------------FAVTSY--GKNLYYTDW 226 (267)
T ss_dssp EEEETTT-TEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSE---------------------EEEEEE--TTEEEEEET
T ss_pred EEEcCCC-CEEEEEECCCCEEEEEecCCCceEEEecC-CCCc---------------------eEEEEe--CCEEEEEEC
Confidence 8876533 25566666778999998864221111111 1111 122322 23455444
Q ss_pred CCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCC
Q 001295 586 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC 623 (1106)
Q Consensus 586 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 623 (1106)
..+.|..+|..+++.+..+.... ......+++.|++.
T Consensus 227 ~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 227 KTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIALSQC 263 (267)
T ss_dssp TTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEECSCC
T ss_pred CCCeEEEEeCCCCCceEEEcccc-ccccceeeecCccC
Confidence 56899999999999888886432 12357788888764
No 264
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.49 E-value=0.00015 Score=84.75 Aligned_cols=82 Identities=16% Similarity=0.162 Sum_probs=52.1
Q ss_pred CCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEE
Q 001295 872 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 951 (1106)
Q Consensus 872 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 951 (1106)
.+|.|.-||+.+++.+-+... ..++.+-.....+.+++.++.|+.++.||.++++..-.. +...+. ...-+.
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~--~l~~g~-----~~~P~~ 522 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKF--KIPSGA-----IGYPMT 522 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE--ECSSCC-----CSCCEE
T ss_pred CcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEe--eCCCCc-----EeccEE
Confidence 357899999999988766542 122222123335678888999999999999998864332 222221 123466
Q ss_pred EcCCCcEEEE
Q 001295 952 FHQDQIHFLV 961 (1106)
Q Consensus 952 ~s~dg~~l~~ 961 (1106)
+..+|++.++
T Consensus 523 y~~~G~qyv~ 532 (599)
T 1w6s_A 523 YTHKGTQYVA 532 (599)
T ss_dssp EEETTEEEEE
T ss_pred EEeCCEEEEE
Confidence 6778875554
No 265
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.48 E-value=5.7e-05 Score=81.86 Aligned_cols=238 Identities=12% Similarity=0.081 Sum_probs=145.8
Q ss_pred CeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecC--------------------CCCCeeEEEEecCCCceEEEe
Q 001295 812 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP--------------------PPPAATFLAFHPQDNNIIAIG 870 (1106)
Q Consensus 812 ~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~--------------------~~~~v~~l~~s~~d~~~la~g 870 (1106)
...+++++++++++.++. ++.|..|+..++... .+.. ....+..+++.++++++++ +
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v-~ 97 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI-V 97 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE-E
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE-E
Confidence 356788999998677776 789999998765432 2210 0135788999963455444 4
Q ss_pred eCCCcEEEEEeecceEEEEec----C-cccCeeEEEEec-CCCEEEEEcC-----------------CCcEEEEeCCCcc
Q 001295 871 MDDSSIQIYNVRVDEVKSKLK----G-HSKRITGLAFSH-ALNVLVSSGA-----------------DSQLCVWSSDGWE 927 (1106)
Q Consensus 871 ~~dg~v~iwd~~~~~~~~~l~----~-h~~~V~~l~~s~-d~~~l~s~s~-----------------Dg~i~vwd~~~~~ 927 (1106)
...+.|..+|..+++. ..+. + .......+++.+ +|.+.++-.. ++.|..||..+++
T Consensus 98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 4445588888765542 2221 1 123468899999 9987776533 3668888876654
Q ss_pred cccceeecccCCCCCCCCCCceEEEcCCCcEEEEE--eCCeEEEEecCCce--EeeecccCCCCCCeeEEEECCCCCEEE
Q 001295 928 KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE--CVKQWVPRESSAPITHATFSCDSQLVY 1003 (1106)
Q Consensus 928 ~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~d~~v~i~d~~~~~--~~~~~~~~~h~~~v~~l~~s~d~~~l~ 1003 (1106)
... ..... .....++++|+|+.|.++ ..+.|.+|++.+.. ....+.. . .. ...++++++|.+.+
T Consensus 177 ~~~--~~~~~-------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~-~g-P~gi~~d~~G~l~v 244 (322)
T 2fp8_A 177 TTL--LLKEL-------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-I-PN-PGNIKRNADGHFWV 244 (322)
T ss_dssp EEE--EEEEE-------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-C-SS-EEEEEECTTSCEEE
T ss_pred EEE--eccCC-------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-C-CC-CCCeEECCCCCEEE
Confidence 211 11111 134789999999876664 55789999987521 1111111 1 22 78899999998766
Q ss_pred EEEc----------CCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295 1004 ACFL----------DATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus 1004 t~s~----------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
+... .+.|..+|. .++.+..+. .+.+.....+. .+++. +++++++...++.|.++++....
T Consensus 245 a~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~----~~~g~~~~~~~--~~~~~--~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 245 SSSEELDGNMHGRVDPKGIKFDE-FGNILEVIP----LPPPFAGEHFE--QIQEH--DGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp EEEEETTSSTTSCEEEEEEEECT-TSCEEEEEE----CCTTTTTSCCC--EEEEE--TTEEEEECSSCSEEEEEEC----
T ss_pred EecCcccccccCCCccEEEEECC-CCCEEEEEE----CCCCCccccce--EEEEe--CCEEEEeecCCCceEEEeccccc
Confidence 6544 467888886 477776665 22221111123 56663 46677776678889999876544
No 266
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.48 E-value=1.1e-05 Score=80.59 Aligned_cols=201 Identities=11% Similarity=0.118 Sum_probs=129.7
Q ss_pred ceeeeecCCCC--CeeEEEEecCCCceEEEeeCCC--cEEEEEeecceEEEEecCcccCeeEEEEecCCCEE-EEEcCCC
Q 001295 842 KTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVL-VSSGADS 916 (1106)
Q Consensus 842 ~~~~~~~~~~~--~v~~l~~s~~d~~~la~g~~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l-~s~s~Dg 916 (1106)
+.+.++ .|.. -...+.|+. +.++.+.+.+| .|+.+|+.+++.+..+.-... ........++..| +..-.++
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEc-CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCC
Confidence 344555 3543 356899985 56677766654 899999999999887754332 3333333334444 4455688
Q ss_pred cEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceEeeecccCCCCC---CeeE
Q 001295 917 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSA---PITH 992 (1106)
Q Consensus 917 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~~~~~~~~~h~~---~v~~ 992 (1106)
.+.+||.++.+....... +. ....+++|++.|.++ .++.|.++|..+.+.++.+....+.. .+..
T Consensus 86 ~v~v~D~~tl~~~~ti~~----~~-------~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNe 154 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRY----PG-------EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNE 154 (243)
T ss_dssp EEEEEETTTTEEEEEEEC----SS-------CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred EEEEEECCcCcEEEEEeC----CC-------CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccccee
Confidence 999999998665432221 11 224445677777664 57789999999999988887644433 3455
Q ss_pred EEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCC---CCCccceEEEEeCCCCCEEEEE
Q 001295 993 ATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVS---SSNVHPLVIAAHPQEPNEFALG 1058 (1106)
Q Consensus 993 l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~d~~~l~t~ 1058 (1106)
+.+. +|+..+..-.+..|.+.|..+|+.+..+......+.... ...-.+-.|+|+|..+++++||
T Consensus 155 Le~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 155 LEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred eEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 6665 666555554678999999999999999886544332210 1111234899999655556665
No 267
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.48 E-value=2.2e-05 Score=78.45 Aligned_cols=187 Identities=10% Similarity=0.114 Sum_probs=125.6
Q ss_pred CCCeeEEEEecCCCEEEEEe-C--CeEEEEEcCCCceeeeecCCCCC-eeEEEEecCCCceEEEeeCCCcEEEEEeecce
Q 001295 810 EEAVPCFALSKNDSYVMSAS-G--GKISLFNMMTFKTMATFMPPPPA-ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 885 (1106)
Q Consensus 810 ~~~v~~l~~s~~~~~l~~~s-d--g~i~vwd~~~~~~~~~~~~~~~~-v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~ 885 (1106)
......+.|+. +.+..+.+ + ..|+.+|+.+++.+......... --.+++. ++++.+....++.+.+||..+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 34466889986 45445544 3 48999999999999887643321 1234443 56677777789999999999999
Q ss_pred EEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eC
Q 001295 886 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE 964 (1106)
Q Consensus 886 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d 964 (1106)
.+.++..... ...+.+|+..|+.+..++.|.++|..+.+......... .+..- ..+..+.+. +|+..+.. .+
T Consensus 97 ~~~ti~~~~~---Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-~g~~~--~~lNeLe~~-~G~lyanvw~s 169 (243)
T 3mbr_X 97 PRARFRYPGE---GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-GGRPL--DNLNELEWV-NGELLANVWLT 169 (243)
T ss_dssp EEEEEECSSC---CCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTT
T ss_pred EEEEEeCCCC---ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-CCccc--ccceeeEEe-CCEEEEEECCC
Confidence 9999875432 23444677777777778899999999866543322211 11100 122344544 67766555 67
Q ss_pred CeEEEEecCCceEeeecccCC-----------CCCCeeEEEECCCCCEEEEEE
Q 001295 965 TQLAIFETTKLECVKQWVPRE-----------SSAPITHATFSCDSQLVYACF 1006 (1106)
Q Consensus 965 ~~v~i~d~~~~~~~~~~~~~~-----------h~~~v~~l~~s~d~~~l~t~s 1006 (1106)
..|.+.|.++++.+..+...+ -..-...|+++|+++.|+..+
T Consensus 170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 899999999999988876431 123568899999887766655
No 268
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.47 E-value=0.00017 Score=84.51 Aligned_cols=150 Identities=16% Similarity=0.107 Sum_probs=94.5
Q ss_pred CcEEEEEeecceEEEEecC--ccc----CeeE-EEEe---cCCC---EEEEEcCCCcEEEEeCCCcccccceeecc----
Q 001295 874 SSIQIYNVRVDEVKSKLKG--HSK----RITG-LAFS---HALN---VLVSSGADSQLCVWSSDGWEKQKNRFLQI---- 936 (1106)
Q Consensus 874 g~v~iwd~~~~~~~~~l~~--h~~----~V~~-l~~s---~d~~---~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~---- 936 (1106)
+.|.-+|..+|+.+-.++. |.. .+.. +.+. .+|+ .|+.++.+|.+.++|..+++.........
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~ 370 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW 370 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence 5899999999998877643 321 1111 2222 4674 78889999999999999887543221110
Q ss_pred ------cCCC-------CC--------------------CCCCCceEEEcCCCcEEEE-Ee-------------------
Q 001295 937 ------PTGR-------TP--------------------TAQSDTRVQFHQDQIHFLV-VH------------------- 963 (1106)
Q Consensus 937 ------~~~~-------~~--------------------~~~~i~~~~~s~dg~~l~~-~~------------------- 963 (1106)
..+. .+ ....-..++++|+...+.+ ..
T Consensus 371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~ 450 (582)
T 1flg_A 371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAY 450 (582)
T ss_dssp EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCce
Confidence 0000 00 0000124677777655544 21
Q ss_pred --------------CCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295 964 --------------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus 964 --------------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
++.|..||+.+++.+-..... .++..-.+...+.+++.++.||.++.||..+|+.+-++.
T Consensus 451 ~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 451 LGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH---LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp CCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES---SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eccceeecCCCCCCcceEEEEECCCCCEEEEecCC---CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence 477999999999887555432 122221122246788889999999999999999998887
No 269
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.44 E-value=0.00013 Score=78.26 Aligned_cols=246 Identities=13% Similarity=0.055 Sum_probs=144.5
Q ss_pred CCCCcceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeE
Q 001295 337 EDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN 416 (1106)
Q Consensus 337 ~~~~~~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~ 416 (1106)
+..+.++...+.-......++|+++|+ |+++-..++.|..||.... .... +. ......
T Consensus 18 ~~~~~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~-~~~~-----~~---------------~~~~p~ 75 (306)
T 2p4o_A 18 ELAPAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGN-QQIH-----AT---------------VEGKVS 75 (306)
T ss_dssp CCCCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCC-EEEE-----EE---------------CSSEEE
T ss_pred cCCCceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCc-eEEE-----Ee---------------CCCCce
Confidence 334555666666557889999999998 6777667889999998753 2211 11 123588
Q ss_pred EEEEccCCCEEEEEeCC-C-eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCce-
Q 001295 417 RVIWSPDGSLFGVAYSR-H-IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK- 493 (1106)
Q Consensus 417 ~l~~spdg~~las~~~d-~-~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~- 493 (1106)
.++++++|+++++.... + .|..+|..+++.. .+..+. .......++..+++. .+++...++.|.++|..+++.
T Consensus 76 gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~-~~~~~~-~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 76 GLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE-TLLTLP-DAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEEEECTTSCEE-EEEECT-TCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEE
T ss_pred eEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE-EEEeCC-CccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEe
Confidence 99999999976665432 2 4667777777643 222221 122334555555554 566666688999999776532
Q ss_pred eEEEec---------cCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEee
Q 001295 494 QYIFEG---------HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 564 (1106)
Q Consensus 494 ~~~~~~---------h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~ 564 (1106)
+....+ .......+ +++. +.++++-...+.|..+++....... ...+.. .+
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngi--s~dg-~~lyv~d~~~~~I~~~~~~~~g~~~-----~~~~~~-~~----------- 211 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGL--KRFG-NFLYVSNTEKMLLLRIPVDSTDKPG-----EPEIFV-EQ----------- 211 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEE--EEET-TEEEEEETTTTEEEEEEBCTTSCBC-----CCEEEE-ES-----------
T ss_pred EEEECCccccccccCCCCcCCCc--CcCC-CEEEEEeCCCCEEEEEEeCCCCCCC-----ccEEEe-cc-----------
Confidence 221111 11223444 3332 2455666678899999987421110 000000 00
Q ss_pred eccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEc---cCCCEEEEEeCC
Q 001295 565 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN---KDGCLLAVSTND 631 (1106)
Q Consensus 565 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s---~~~~~l~~~~~d 631 (1106)
.....++++++|+.+++....+.|.+++.. ++...............+++|. ++++.|++.+..
T Consensus 212 --~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 212 --TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp --CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred --CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 122336677777777776677899999975 6553322222223457889998 888877776654
No 270
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.38 E-value=0.0001 Score=79.82 Aligned_cols=253 Identities=11% Similarity=0.071 Sum_probs=142.6
Q ss_pred CCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCcc--cc-c---cccCCCCcCeEEEEEcc-C
Q 001295 351 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMP--LQ-A---ALVKDPGVSVNRVIWSP-D 423 (1106)
Q Consensus 351 ~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~--~~-~---~~~~~h~~~V~~l~~sp-d 423 (1106)
....+++|+++|+ ++.++..++.|..||..+++... +. ....... .. . .........+..+++.+ +
T Consensus 19 ~~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~---~~---~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~ 91 (322)
T 2fp8_A 19 YAPNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVD---FA---YASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN 91 (322)
T ss_dssp SCCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEE---EE---ESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT
T ss_pred CCceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEE---Ee---cccccccccccccccchhccccCCCCceEEEcCCC
Confidence 4567889999998 47778888999999987654321 10 0000000 00 0 00000113578999998 5
Q ss_pred CCEEEEEeCCCeEEEEEccCCceeeeee-eecc-ccCCeeEEEEcC-CCCceEEEEecC-----------------CCcE
Q 001295 424 GSLFGVAYSRHIVQIYSYHGGDEVRQHL-EIDA-HVGGVNDIAFSH-PNKQLCVITCGD-----------------DKTI 483 (1106)
Q Consensus 424 g~~las~~~d~~v~iwd~~~~~~~~~~~-~l~~-h~~~V~~~~~s~-d~~~~~l~s~~~-----------------d~~i 483 (1106)
|+ |.++...+.|..+|..+++. ..+. ...+ .......+++.+ +|. +.++... ++.|
T Consensus 92 g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g~v 167 (322)
T 2fp8_A 92 NQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTGRL 167 (322)
T ss_dssp TE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCEEE
T ss_pred Cc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCceE
Confidence 65 44454445588888776542 2111 1111 123578899999 887 5555322 3678
Q ss_pred EEEeCCCCceeEEEeccCCCeEEEeccccCCceEE-EEEecCCeEEEEeCCCCC--ceeEeeCCCCeeEEEEEecCCCeE
Q 001295 484 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLG--SRVDYEAPGRWCTTMAYSADGTRT 560 (1106)
Q Consensus 484 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~~ 560 (1106)
..||..+++...... .......+++++ +++.| ++-...+.|..|++.... ....+..... .
T Consensus 168 ~~~d~~~~~~~~~~~-~~~~p~gia~~~--dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P------------ 231 (322)
T 2fp8_A 168 IKYDPSTKETTLLLK-ELHVPGGAEVSA--DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-P------------ 231 (322)
T ss_dssp EEEETTTTEEEEEEE-EESCCCEEEECT--TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-E------------
T ss_pred EEEeCCCCEEEEecc-CCccCcceEECC--CCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-C------------
Confidence 899987776433222 223345677654 44544 454667899999987421 1111110001 2
Q ss_pred EEeeeccceeEEEEcCCCCEEEEEEC----------CCeEEEEECCCcceeEEEccCCC--CCCcCeEEEccCCCEEEEE
Q 001295 561 YQGFRKRSLGVVQFDTTKNRFLAAGD----------DFSIKFWDMDSVQLLTSIDADGG--LPASPRIRFNKDGCLLAVS 628 (1106)
Q Consensus 561 ~~~~~~~~i~~~~~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~s~~~~~l~~~ 628 (1106)
..++++++|++.++... .+.|..+|. .++.+..+..... ...+.++++ .+++++++.
T Consensus 232 ---------~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~ 300 (322)
T 2fp8_A 232 ---------GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGT 300 (322)
T ss_dssp ---------EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEEC
T ss_pred ---------CCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEee
Confidence 23555666665555433 467888886 4777766654322 234666766 466666666
Q ss_pred eCCCcEEEEEccC
Q 001295 629 TNDNGIKILATSD 641 (1106)
Q Consensus 629 ~~dg~i~iwd~~~ 641 (1106)
..++.|..+++..
T Consensus 301 ~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 301 LFHGSVGILVYDK 313 (322)
T ss_dssp SSCSEEEEEEC--
T ss_pred cCCCceEEEeccc
Confidence 6778899998754
No 271
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.38 E-value=0.00018 Score=77.14 Aligned_cols=226 Identities=11% Similarity=-0.010 Sum_probs=137.2
Q ss_pred cceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCC
Q 001295 744 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 823 (1106)
Q Consensus 744 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~ 823 (1106)
.....++++++++.+++-..++.|..|+.... .. .+|. ....+..++++++|+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-------~~-----~~~~---------------~~~~p~gia~~~dG~ 84 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-------QQ-----IHAT---------------VEGKVSGLAFTSNGD 84 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-------EE-----EEEE---------------CSSEEEEEEECTTSC
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-------eE-----EEEe---------------CCCCceeEEEcCCCc
Confidence 45678999999986666556788887764321 00 0010 123578899999999
Q ss_pred EEEEEe-CC--eEEEEEcCCCceeeeecC-CCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecce--EEEE--------
Q 001295 824 YVMSAS-GG--KISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE--VKSK-------- 889 (1106)
Q Consensus 824 ~l~~~s-dg--~i~vwd~~~~~~~~~~~~-~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~--~~~~-------- 889 (1106)
++++.. .+ .|..++..+++....... .......++..+ ++..+++-..++.|+++|..+++ ....
T Consensus 85 l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~ 163 (306)
T 2p4o_A 85 LVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSN 163 (306)
T ss_dssp EEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSS
T ss_pred EEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCcccccc
Confidence 766554 22 477777777765432221 122234556555 56656655568899999876542 2110
Q ss_pred ecCcccCeeEEEEecCCCEEE-EEcCCCcEEEEeCCC-cccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCe
Q 001295 890 LKGHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQ 966 (1106)
Q Consensus 890 l~~h~~~V~~l~~s~d~~~l~-s~s~Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~ 966 (1106)
..+.....+.+ ++|++.|. +-...+.|.+++++. ++.......... .....++++++|+++++ ...+.
T Consensus 164 ~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-------~~P~gi~vd~dG~l~va~~~~~~ 234 (306)
T 2p4o_A 164 SESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-------TNIDDFAFDVEGNLYGATHIYNS 234 (306)
T ss_dssp TTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-------CCCSSEEEBTTCCEEEECBTTCC
T ss_pred ccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-------CCCCCeEECCCCCEEEEeCCCCe
Confidence 01111234555 88887654 455678899999875 322111111111 14578999999987776 35788
Q ss_pred EEEEecCCceEee--ecccCCCCCCeeEEEEC---CCCCEEEEEEcCC
Q 001295 967 LAIFETTKLECVK--QWVPRESSAPITHATFS---CDSQLVYACFLDA 1009 (1106)
Q Consensus 967 v~i~d~~~~~~~~--~~~~~~h~~~v~~l~~s---~d~~~l~t~s~Dg 1009 (1106)
|.++|.. ++... .+. ......++++|. ||++.|+.++..+
T Consensus 235 V~~~~~~-G~~~~~~~~~--~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 235 VVRIAPD-RSTTIIAQAE--QGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EEEECTT-CCEEEEECGG--GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred EEEECCC-CCEEEEeecc--cccCCceEEEEecccCCCCEEEEECCCC
Confidence 9999976 55422 333 224578999998 8988877666543
No 272
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.37 E-value=0.0013 Score=70.92 Aligned_cols=277 Identities=12% Similarity=0.098 Sum_probs=154.1
Q ss_pred ccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCC
Q 001295 743 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 822 (1106)
Q Consensus 743 ~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~ 822 (1106)
...+.++.|.+++..++ ++..|.|.. ..+.+ +-|.... .........+.++.+++ +
T Consensus 35 ~~~~~~v~~~~~~~~~~-~G~~g~i~~-s~DgG--------------~tW~~~~-------~~~~~~~~~~~~i~~~~-~ 90 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWL-VGVNATLME-TRDGG--------------QTWEPRT-------LVLDHSDYRFNSVSFQG-N 90 (327)
T ss_dssp SSCEEEEEESSSSCEEE-EETTTEEEE-ESSTT--------------SSCEECC-------CCCSCCCCEEEEEEEET-T
T ss_pred CCcEEEEEECCCCcEEE-EcCCCeEEE-eCCCC--------------CCCeECC-------CCCCCCCccEEEEEecC-C
Confidence 34688899987777666 556665432 11110 0121110 00001244688899986 5
Q ss_pred CEEEEEeCCeEEEEEcCCCceeeeec---CCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEE-EecCcccCee
Q 001295 823 SYVMSASGGKISLFNMMTFKTMATFM---PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-KLKGHSKRIT 898 (1106)
Q Consensus 823 ~~l~~~sdg~i~vwd~~~~~~~~~~~---~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~-~l~~h~~~V~ 898 (1106)
..++++..+.|.. ....++.-.... .+...+..+.+.+ ++.+++++ .+|.|+. ..+.|+.-. ...++...+.
T Consensus 91 ~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~ 166 (327)
T 2xbg_A 91 EGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMR 166 (327)
T ss_dssp EEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEE
T ss_pred eEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceE
Confidence 5566665775543 333333322222 2334578888877 67777665 4565432 112232221 2234556789
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEeC--CCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCce
Q 001295 899 GLAFSHALNVLVSSGADSQLCVWSS--DGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE 976 (1106)
Q Consensus 899 ~l~~s~d~~~l~s~s~Dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~ 976 (1106)
++++.+++.+++.+...+..+-+|- .+.+ .+... . ...+..++++++++.++++.++.+++.+...++
T Consensus 167 ~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~-----~~~~~--~---~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~ 236 (327)
T 2xbg_A 167 NLNRSPSGEYVAVSSRGSFYSTWEPGQTAWE-----PHNRT--T---SRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSE 236 (327)
T ss_dssp EEEECTTSCEEEEETTSSEEEEECTTCSSCE-----EEECC--S---SSCEEEEEECTTSCEEEEETTTEEEEEETTEEE
T ss_pred EEEEcCCCcEEEEECCCcEEEEeCCCCCcee-----ECCCC--C---CCccceeEECCCCCEEEEeCCceEEEecCCCCC
Confidence 9999999988877755443444442 2221 12111 1 135678899999998888888888776533344
Q ss_pred EeeecccC--CCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCE
Q 001295 977 CVKQWVPR--ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNE 1054 (1106)
Q Consensus 977 ~~~~~~~~--~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~ 1054 (1106)
.-..+... .+...+.++++.+++..++++ .+|.| .+..+.|+.-..+......+ ..++ .+.|.+ +..
T Consensus 237 tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~-----~~~~--~v~~~~--~~~ 305 (327)
T 2xbg_A 237 NWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVP-----SNFY--KILFFS--PDQ 305 (327)
T ss_dssp EECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSS-----SCCC--EEEEEE--TTE
T ss_pred eeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCC-----CCeE--EEEEEC--CCc
Confidence 33322211 123468999999988877765 47777 35566665444333110111 1245 677764 456
Q ss_pred EEEEeCCCcEEEEe
Q 001295 1055 FALGLSDGGVHVFE 1068 (1106)
Q Consensus 1055 l~t~~~Dg~v~vW~ 1068 (1106)
+++++.+|.|.-++
T Consensus 306 ~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 306 GFILGQKGILLRYV 319 (327)
T ss_dssp EEEECSTTEEEEEC
T ss_pred eEEEcCCceEEEEc
Confidence 77778899776655
No 273
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.36 E-value=4.4e-05 Score=93.12 Aligned_cols=159 Identities=12% Similarity=0.095 Sum_probs=95.3
Q ss_pred CcEEEEEe-cCCCeEEEEEeccC----cEEEEecCCc-ceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCC
Q 001295 352 SPMSMDFH-PVQQTLLLVGTNVG----DIGLWEVGSR-ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 425 (1106)
Q Consensus 352 ~v~~~~~s-p~g~~llatg~~dg----~i~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 425 (1106)
.+...+|| |||++|+.+.+.+| +|+++|+.++ +.+.. . + ......++|||||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~---~~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------V---SGTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------E---EEECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------c---cCceeeEEEecCCC
Confidence 67889999 99997555554444 4999999988 63211 0 1 11234688999999
Q ss_pred EEEEEeCC-----CeEEEEEccCCceeeeeeeec-cccCCeeEEEEcCCCCceEEEEec-CCCcEEEEeCCCCc-ee--E
Q 001295 426 LFGVAYSR-----HIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCG-DDKTIKVWDATNGA-KQ--Y 495 (1106)
Q Consensus 426 ~las~~~d-----~~v~iwd~~~~~~~~~~~~l~-~h~~~V~~~~~s~d~~~~~l~s~~-~d~~i~iwd~~~~~-~~--~ 495 (1106)
.|+....| ..|.++++.++..... ..+. .+......+.|+|||+.+++.+.. ....|+++|+.++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~-lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDV-CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCE-EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcE-EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 99887765 3688888887642211 1222 223456788999999964333322 24568888988762 22 3
Q ss_pred EE-eccCCCeEEEeccccCCceEEEEEecC----CeEEEEeCCC
Q 001295 496 IF-EGHEAPVYSVCPHHKENIQFIFSTALD----GKIKAWLYDN 534 (1106)
Q Consensus 496 ~~-~~h~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~ 534 (1106)
.+ .+......++.|+. ++.+++....+ ..|..+|+.+
T Consensus 313 ~l~~~~~~~~~s~~~~~--g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMHG--TSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp ESSCCCTTCCEEEEEET--TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred EeecCCCCceEEEeeee--CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 33 33344555554322 22444444443 3566666654
No 274
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.33 E-value=0.00028 Score=71.77 Aligned_cols=217 Identities=11% Similarity=0.109 Sum_probs=133.3
Q ss_pred eecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecC-cccCeeEEEEecCCCEEEEEcCCCcEEEEeCC
Q 001295 846 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSD 924 (1106)
Q Consensus 846 ~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~-h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~ 924 (1106)
.+.+-...+..++++|+++.++++...++.|...|.. ++.++.+.- -....-.|++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 3455556899999999666777888899999999987 888777632 12457788999999887777677889999887
Q ss_pred Cccccc-ceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCC---c---eEeee--cccCCCCCCeeEEE
Q 001295 925 GWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK---L---ECVKQ--WVPRESSAPITHAT 994 (1106)
Q Consensus 925 ~~~~~~-~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~---~---~~~~~--~~~~~h~~~v~~l~ 994 (1106)
...... .......-+....+.....++|+|+++.|.++ ......+|.+.. . ..... +....+...+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 644211 11111111122334567899999998766664 333344444431 1 11111 11112345678999
Q ss_pred ECCCCCE-EEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEE
Q 001295 995 FSCDSQL-VYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1067 (1106)
Q Consensus 995 ~s~d~~~-l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW 1067 (1106)
+.|.... ++.......|.++|.. |+.+..+....-. ++-......+-.|+|.+ +|++.++ ++-+.++++
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~-~~l~~~~~qpEGia~d~-~G~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGS-RGLSHNIKQAEGVAMDA-SGNIYIV-SEPNRFYRF 249 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTG-GGCSSCCCSEEEEEECT-TCCEEEE-ETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCcc-CCcccccCCCCeeEECC-CCCEEEE-cCCceEEEE
Confidence 9996554 5555566789999966 5566666522110 00001113456899999 6875555 655544444
No 275
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.29 E-value=4.8e-05 Score=92.78 Aligned_cols=193 Identities=12% Similarity=0.063 Sum_probs=110.0
Q ss_pred CeeEEEEe-cCCCEEEEEe--CC----eEEEEEcCCC-ceeee-ecCCCCCeeEEEEecCCCceEEEeeCC-----CcEE
Q 001295 812 AVPCFALS-KNDSYVMSAS--GG----KISLFNMMTF-KTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQ 877 (1106)
Q Consensus 812 ~v~~l~~s-~~~~~l~~~s--dg----~i~vwd~~~~-~~~~~-~~~~~~~v~~l~~s~~d~~~la~g~~d-----g~v~ 877 (1106)
.+...+|| |||++||.+. +| +|+++|+.++ +.+.. +. .....++|+| |++.|+....| ..|+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGP-DHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECS-STTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEec-CCCEEEEEEECCCCCCCEEE
Confidence 57789999 9999999775 23 4999999988 63211 11 1235688999 77767666654 3688
Q ss_pred EEEeecceE--EEEec-CcccCeeEEEEecCCCEEEEEcC---CCcEEEEeCCCcccccceeecccCCCCCCCCCCceEE
Q 001295 878 IYNVRVDEV--KSKLK-GHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 951 (1106)
Q Consensus 878 iwd~~~~~~--~~~l~-~h~~~V~~l~~s~d~~~l~s~s~---Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 951 (1106)
++++.++.. ...+. .+.....++.|||||++|+..+. ...|.++|+.++.... ....+..+.. .....+.
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~-~~~~l~~~~~---~~~~s~~ 326 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHN-TLEIVRPREK---GVRYDVQ 326 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCC-CEEESSCCCT---TCCEEEE
T ss_pred EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCc-eeEEeecCCC---CceEEEe
Confidence 888876531 22222 22334668899999999886653 3458888887752111 0011111111 1223343
Q ss_pred EcCCCcEEEE-EeC-----CeEEEEecCCceEeee-cccCCCCC--CeeEEEECCCCCEEEEEEcCCe--EEEEEc
Q 001295 952 FHQDQIHFLV-VHE-----TQLAIFETTKLECVKQ-WVPRESSA--PITHATFSCDSQLVYACFLDAT--VCVFSA 1016 (1106)
Q Consensus 952 ~s~dg~~l~~-~~d-----~~v~i~d~~~~~~~~~-~~~~~h~~--~v~~l~~s~d~~~l~t~s~Dg~--i~vwd~ 1016 (1106)
|+. |..|+. +.. ..|..+|+.+...... +. .|.. .+..+.+. .+.++++...|+. |+++++
T Consensus 327 ~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li--~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 327 MHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLV--DHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEE--CCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred eee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEE--CCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 333 555444 432 2677788765322122 22 2222 45556654 3345566777886 445564
No 276
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.28 E-value=0.00054 Score=69.64 Aligned_cols=203 Identities=8% Similarity=0.034 Sum_probs=127.1
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 428 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 428 (1106)
-.+.+..++|+|++..|+++...++.|...|.. ++.+.... +.+ ......|++.+++.+++
T Consensus 25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~g~~~v 85 (255)
T 3qqz_A 25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGDNQFVI 85 (255)
T ss_dssp CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECSTTEEEE
T ss_pred cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCCCEEEE
Confidence 446899999999988778888888999999988 77665422 222 24577889999998777
Q ss_pred EEeCCCeEEEEEccCCceee--eeeee----ccccCCeeEEEEcCCCCceEEEEecCCC-cEEEEeC-CCCceeEEEe--
Q 001295 429 VAYSRHIVQIYSYHGGDEVR--QHLEI----DAHVGGVNDIAFSHPNKQLCVITCGDDK-TIKVWDA-TNGAKQYIFE-- 498 (1106)
Q Consensus 429 s~~~d~~v~iwd~~~~~~~~--~~~~l----~~h~~~V~~~~~s~d~~~~~l~s~~~d~-~i~iwd~-~~~~~~~~~~-- 498 (1106)
+.-.++.+.++++.....+. ....+ .........++|+|+++.+ +++...+. .|..|+- ..+..+..+.
T Consensus 86 s~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L-~va~E~~p~~i~~~~g~~~~~~l~i~~~~ 164 (255)
T 3qqz_A 86 SDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTF-WFFKEKNPIEVYKVNGLLSSNELHISKDK 164 (255)
T ss_dssp EETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEE-EEEEESSSEEEEEEESTTCSSCCEEEECH
T ss_pred EECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEE-EEEECcCCceEEEEcccccCCceeeecch
Confidence 76567889999887654322 11111 1234567899999999853 33333332 4555551 1222233332
Q ss_pred -----ccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCC---------CeeEEEEEecCCCeEEEee
Q 001295 499 -----GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG---------RWCTTMAYSADGTRTYQGF 564 (1106)
Q Consensus 499 -----~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~~~~~~ 564 (1106)
.+...+.++++++.. +++++.....+.+..+|... ..+..+.... .....|+
T Consensus 165 ~~~~~~~~~d~S~l~~dp~t-g~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia------------ 230 (255)
T 3qqz_A 165 ALQRQFTLDDVSGAEFNQQK-NTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVA------------ 230 (255)
T ss_dssp HHHHTCCSSCCCEEEEETTT-TEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEE------------
T ss_pred hhccccccCCceeEEEcCCC-CeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeE------------
Confidence 123456788888754 57888888888999998663 3333333221 1334444
Q ss_pred eccceeEEEEcCCCCEEEEEECCCeEEEEEC
Q 001295 565 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM 595 (1106)
Q Consensus 565 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 595 (1106)
++++|+ ++..++.+.++.+..
T Consensus 231 ---------~d~~G~-lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 231 ---------MDASGN-IYIVSEPNRFYRFTP 251 (255)
T ss_dssp ---------ECTTCC-EEEEETTTEEEEEEC
T ss_pred ---------ECCCCC-EEEEcCCceEEEEEe
Confidence 445544 666688887777754
No 277
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.24 E-value=0.026 Score=69.02 Aligned_cols=494 Identities=8% Similarity=0.030 Sum_probs=251.1
Q ss_pred CcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC
Q 001295 412 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 491 (1106)
Q Consensus 412 ~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 491 (1106)
...|.++.-..+|.+ -.|+.+| +..||-..-+..... -......|.++....+|. |..|+.+| +..+|..+.
T Consensus 21 ~n~V~~I~qD~~G~l-WigT~~G-L~ryDG~~~~~~~~~--~~~~~~~i~~i~~d~~g~---lWigT~~G-l~~yd~~~~ 92 (758)
T 3ott_A 21 ASVVSCFLQDSEGLI-WIGSNKG-LFSYDGYSTQQHFTY--GENNNTRIYCGVIIDNTY---LYMGTDNG-ILVYNYRAD 92 (758)
T ss_dssp CCCEEEEEECTTSCE-EEEESSC-EEEECSSCEEECSCT--TSTTSSCEEEEEEETTTE---EEEEETTE-EEEEETTTT
T ss_pred cceEEEEEECCCCCE-EEEECCC-ccccCCCceEEEEcc--CCCCCceEEEEEEcCCCc---EEEEeCCC-eEEEeCCCC
Confidence 457999998888854 4566777 556663221111100 011234688888777765 44444454 789998776
Q ss_pred ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEee-----CCCCeeEEEEEecCCCeEEEeeec
Q 001295 492 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-----APGRWCTTMAYSADGTRTYQGFRK 566 (1106)
Q Consensus 492 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~~~~~~~~ 566 (1106)
+...........|.++.. .++ .|..++.+ -+..+|..+... ..+. .....|.+
T Consensus 93 ~f~~~~~~~~~~i~~i~~---~~g-~lWigt~~-Gl~~~~~~~~~~-~~~~~~~~~l~~~~i~~---------------- 150 (758)
T 3ott_A 93 RYEQPETDFPTDVRTMAL---QGD-TLWLGALN-GLYTYQLQSRKL-TSFDTRRNGLPNNTIYS---------------- 150 (758)
T ss_dssp EECCCSCCCCSCEEEEEE---ETT-EEEEEETT-EEEEEETTTCCE-EEECHHHHCCSCSCEEE----------------
T ss_pred EEECcccCCCceEEEEEe---cCC-cEEEEcCC-cceeEeCCCCeE-EEeccCCCCcCCCeEEE----------------
Confidence 433211112234666642 233 35555555 577788765332 2220 11122333
Q ss_pred cceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCC----CCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 567 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 567 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
+....++. +..+..+ -|..++..+++... +.... ....|.++....++..|..|+. +.+..++..++
T Consensus 151 -----i~~d~~g~-lWigt~~-Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~ 221 (758)
T 3ott_A 151 -----IIRTKDNQ-IYVGTYN-GLCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTG 221 (758)
T ss_dssp -----EEECTTCC-EEEEETT-EEEEEETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTT
T ss_pred -----EEEcCCCC-EEEEeCC-CHhhCccCCCceEE-ecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCC
Confidence 33444444 3344544 57788877665432 22111 1123667777776766555664 45777776543
Q ss_pred chhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEe
Q 001295 643 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 722 (1106)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~ 722 (1106)
. . ..+.
T Consensus 222 ~-~-~~~~------------------------------------------------------------------------ 227 (758)
T 3ott_A 222 Q-I-KQTE------------------------------------------------------------------------ 227 (758)
T ss_dssp E-E-EEEE------------------------------------------------------------------------
T ss_pred e-E-Eecc------------------------------------------------------------------------
Confidence 1 0 0000
Q ss_pred cCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccc
Q 001295 723 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 802 (1106)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 802 (1106)
. .....|.++....+|...+. +.+ -+.+++.....+. .+.........
T Consensus 228 -----------~------l~~~~i~~i~~d~~g~lWig-T~~-Gl~~~~~~~~~~~------------~~~~~~~~~~~- 275 (758)
T 3ott_A 228 -----------A------FHNNSIKSLALDGNGDLLAG-TDN-GLYVYHNDTTPLQ------------HIIHDSRNIQS- 275 (758)
T ss_dssp -----------E------EEEEEEEEEEECTTCCEEEE-ETT-EEEEECCTTSCCE------------EECCCTTCTTS-
T ss_pred -----------C------CCCCeEEEEEEcCCCCEEEE-eCC-ceeEEecCCCcEE------------EEEcCCCCcCc-
Confidence 0 01235777888888875554 444 4566654321110 00000000000
Q ss_pred ccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeee-----cCCCCCeeEEEEecCCCceEEEeeCCCcEE
Q 001295 803 DVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSSIQ 877 (1106)
Q Consensus 803 ~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~-----~~~~~~v~~l~~s~~d~~~la~g~~dg~v~ 877 (1106)
+ ....|.++....+|.+-+....| +.++.....-..... ......|.++.-.. ++.+.+ |+.+| +.
T Consensus 276 -l----~~~~i~~i~~D~~g~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~-~g~lWi-Gt~~G-l~ 346 (758)
T 3ott_A 276 -L----TNNIIWNIFADQEHNIWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDS-KGFYWF-GGANG-LI 346 (758)
T ss_dssp -C----SCSCEEEEEECTTCCEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECT-TCCEEE-EETTE-EE
T ss_pred -C----CcCeEEEEEEcCCCCEEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcC-CCCEEE-eeCCc-ce
Confidence 0 34568999988888766554455 544433211111110 11234688888776 565544 45555 55
Q ss_pred EEEeecce--EEEEec-------CcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCc
Q 001295 878 IYNVRVDE--VKSKLK-------GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT 948 (1106)
Q Consensus 878 iwd~~~~~--~~~~l~-------~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 948 (1106)
.++..+++ ....+. -....|.++.-..+|.+.+. +.+ -|..|+..+++....... ..........|.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWig-t~~-GL~~~~~~~~~~~~~~~~--~~~~~~~~~~v~ 422 (758)
T 3ott_A 347 RFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIA-TDG-SINRYDYATRQFIHYNIV--DNTGTYNTNWTY 422 (758)
T ss_dssp EESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEE-ETT-EEEEEETTTTEEEEEEEE--CCC--CBSSSEE
T ss_pred eecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEE-eCC-cHhhcCcCCCcEEEeecC--CCcCCCCCceEE
Confidence 56544421 111121 01245888888888876553 344 588899877543211100 110000123567
Q ss_pred eEEEcCCCcEEEEEeCCeEEEEecCCc------eEe--eec--ccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001295 949 RVQFHQDQIHFLVVHETQLAIFETTKL------ECV--KQW--VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus 949 ~~~~s~dg~~l~~~~d~~v~i~d~~~~------~~~--~~~--~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
++....+|++.+.+..+.+.++|..+. ... ..+ ...-....|.++...++|.+.+.++..+-|..+|..+
T Consensus 423 ~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~ 502 (758)
T 3ott_A 423 YIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRT 502 (758)
T ss_dssp EEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTT
T ss_pred EEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCC
Confidence 788888888777666678888886531 111 111 1111134699999999998766333345588889888
Q ss_pred ceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295 1019 LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus 1019 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
++...... ..+.. . ..+.++.... +|.+.+ |+.. -|..++..+..
T Consensus 503 ~~~~~~~~--~~~~~---~--~~~~~i~~d~-~g~lWi-gt~~-Gl~~~~~~~~~ 547 (758)
T 3ott_A 503 REVTKLFA--DELTG---E--KSPNYLLCDE-DGLLWV-GFHG-GVMRINPKDES 547 (758)
T ss_dssp TEEEEECT--TTSCG---G--GCEEEEEECT-TSCEEE-EETT-EEEEECC--CC
T ss_pred CceEEecC--CCcCC---C--cccceEEECC-CCCEEE-EecC-ceEEEecCCCc
Confidence 76553211 11110 1 1222455544 565554 4444 48888877655
No 278
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.21 E-value=0.00012 Score=87.92 Aligned_cols=238 Identities=11% Similarity=-0.021 Sum_probs=129.8
Q ss_pred CCeeEEEEecCCCEEEEEe--CCeEEEEEcCCCceeeeecCCCCC-eeEEEEecCCCceEEEee-CC-----CcEEEEEe
Q 001295 811 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPA-ATFLAFHPQDNNIIAIGM-DD-----SSIQIYNV 881 (1106)
Q Consensus 811 ~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~-v~~l~~s~~d~~~la~g~-~d-----g~v~iwd~ 881 (1106)
....++++..+++++++|+ ++.+.+||..+.+....-..+... -.++++.+ ++++++.|+ .+ ..+.+||.
T Consensus 243 ~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~ 321 (656)
T 1k3i_A 243 MFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSP 321 (656)
T ss_dssp CSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEET
T ss_pred CccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCC
Confidence 3345678889999999998 468999998876543322212121 23455666 788999988 44 47999999
Q ss_pred ecceEEEEe----cCcccCeeEEEEecCCCEEEEEcCCC---------cEEEEeCCCcccccceeecccCC---CCCCCC
Q 001295 882 RVDEVKSKL----KGHSKRITGLAFSHALNVLVSSGADS---------QLCVWSSDGWEKQKNRFLQIPTG---RTPTAQ 945 (1106)
Q Consensus 882 ~~~~~~~~l----~~h~~~V~~l~~s~d~~~l~s~s~Dg---------~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~ 945 (1106)
.+.+-...- ......-....+..++..++.++.|| .+..||..+..-. ........ ......
T Consensus 322 ~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~--~~~~~~~~~~~~~~~~~ 399 (656)
T 1k3i_A 322 SSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV--KSAGKRQSNRGVAPDAM 399 (656)
T ss_dssp TTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE--EEEEECEETTEECCCCB
T ss_pred CCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCccee--ecCCccccccccCCCCC
Confidence 876532210 00000000011234555556665554 4677887764321 11111100 000001
Q ss_pred CCceEEEcC-CCcEEEEE-eCC-----------eEEEEecCCceEeeecccCCCCCC-eeEEEECCCCCEEEEEEcC---
Q 001295 946 SDTRVQFHQ-DQIHFLVV-HET-----------QLAIFETTKLECVKQWVPRESSAP-ITHATFSCDSQLVYACFLD--- 1008 (1106)
Q Consensus 946 ~i~~~~~s~-dg~~l~~~-~d~-----------~v~i~d~~~~~~~~~~~~~~h~~~-v~~l~~s~d~~~l~t~s~D--- 1008 (1106)
.-.++.|.. +++.++.+ .++ .+.+||..+...........+... -.+++..|++++++.|+.+
T Consensus 400 ~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~ 479 (656)
T 1k3i_A 400 CGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGI 479 (656)
T ss_dssp TCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCC
T ss_pred CCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCc
Confidence 224455543 67777774 321 688889887665443201112222 3455677899999999865
Q ss_pred --------CeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeC
Q 001295 1009 --------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS 1060 (1106)
Q Consensus 1009 --------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~ 1060 (1106)
..+.+||..+.+-... . .++... . -. -.....| |+++++.|+.
T Consensus 480 ~~~~~~~~~~v~~ydp~t~~W~~~-~---~~~~~R--~-~h-s~a~ll~-dg~v~v~GG~ 530 (656)
T 1k3i_A 480 PFEDSTPVFTPEIYVPEQDTFYKQ-N---PNSIVR--V-YH-SISLLLP-DGRVFNGGGG 530 (656)
T ss_dssp TTCCCSBCCCCEEEEGGGTEEEEC-C---CCSSCC--C-TT-EEEEECT-TSCEEEEECC
T ss_pred CcCCCCcccceEEEcCCCCceeec-C---CCCCcc--c-cc-cHhhcCC-CcEEEecCCC
Confidence 4689999988765432 1 111110 0 11 1233446 7899999985
No 279
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.20 E-value=0.00091 Score=71.83 Aligned_cols=207 Identities=6% Similarity=-0.033 Sum_probs=129.9
Q ss_pred CCCeeEEEEecCCCEEEEEe--CCeEEEEEcCC----CceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec
Q 001295 810 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMT----FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 883 (1106)
Q Consensus 810 ~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~----~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~ 883 (1106)
...+..++|++.+..|..+. ++.|..+++.+ ......+.........+++.+.+++++++-..++.|.++++..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 44578999999877777666 58899999876 2222223323345688999874566666666788999999875
Q ss_pred ceEEEEecCcccCeeEEEEecCCCEEEEEcCC--CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE
Q 001295 884 DEVKSKLKGHSKRITGLAFSHALNVLVSSGAD--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 961 (1106)
Q Consensus 884 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 961 (1106)
......+........++++.|++..|..+... +.|...+++.... ..... ... .....+++++++..|..
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~--~~~~~-~~~-----~~P~gla~d~~~~~lY~ 180 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YSLVT-ENI-----QWPNGITLDLLSGRLYW 180 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE--EEEEC-SSC-----SCEEEEEEETTTTEEEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe--EEEEE-CCC-----CCceEEEEeccCCEEEE
Confidence 43333333334567899999977766655543 6788887765221 11111 111 24578999998777766
Q ss_pred E--eCCeEEEEecCCceEeeeccc-CCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295 962 V--HETQLAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus 962 ~--~d~~v~i~d~~~~~~~~~~~~-~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
+ ..+.|..+|+..... ..+.. .........|++. .+.++++-...+.|..++..+|+.+..+.
T Consensus 181 ~D~~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 181 VDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EECCCCeEEEEecCCCce-EEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 4 557899999875332 22221 1123456788884 35555566667889999988887666554
No 280
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.19 E-value=0.00087 Score=73.06 Aligned_cols=238 Identities=12% Similarity=0.042 Sum_probs=148.4
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEec
Q 001295 812 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 891 (1106)
Q Consensus 812 ~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~ 891 (1106)
..+|.+..+ ..+|+.+....|+..++........+. ....+..++|++.++.++.+-...+.|+.+++..+.....+.
T Consensus 35 ~~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 112 (349)
T 3v64_C 35 RRSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 112 (349)
T ss_dssp SSCEEESSS-CCEEEEECBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred CCccccccc-CceeEeecccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence 345555555 446666666678888887655444343 334588999998566666666677899999987655433333
Q ss_pred CcccCeeEEEEecCCCE-EEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE--eC-CeE
Q 001295 892 GHSKRITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE-TQL 967 (1106)
Q Consensus 892 ~h~~~V~~l~~s~d~~~-l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~d-~~v 967 (1106)
.......++++.+.+.. .++-...+.|.+.+++.... .... ..+. .....++++|.+..|..+ .. +.|
T Consensus 113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~--~~l~--~~~l----~~P~~iavdp~~g~ly~td~~~~~~I 184 (349)
T 3v64_C 113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR--KVLL--WQSL----EKPRAIALHPMEGTIYWTDWGNTPRI 184 (349)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEE--CTTC----SCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce--EEEE--eCCC----CCcceEEEecCcCeEEEeccCCCCEE
Confidence 33345678999975554 45556678899999876321 1111 1111 245889999976665553 34 778
Q ss_pred EEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEE
Q 001295 968 AIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1046 (1106)
Q Consensus 968 ~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1046 (1106)
..+++...... .+.. ..-.....|+++|++..|+.+. ..+.|..+|++.......+... .-.|..++
T Consensus 185 ~r~~~dG~~~~-~~~~-~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~----------~~~P~gia 252 (349)
T 3v64_C 185 EASSMDGSGRR-IIAD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG----------LPHPFAIT 252 (349)
T ss_dssp EEEETTSCSCE-ESCC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS----------CSSEEEEE
T ss_pred EEEeCCCCCcE-EEEE-CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC----------CCCceEEE
Confidence 88888654332 2221 2244678999998777766554 4578999998754333222211 12355677
Q ss_pred EeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295 1047 AHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus 1047 ~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
+. ++.++++-...+.|...+..+++
T Consensus 253 v~--~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 253 VF--EDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp EE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred EE--CCEEEEecCCCCeEEEEEccCCC
Confidence 74 35667777677888888765665
No 281
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.18 E-value=0.0015 Score=71.20 Aligned_cols=205 Identities=10% Similarity=-0.002 Sum_probs=132.5
Q ss_pred CCeeEEEEecCCCEEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEE
Q 001295 811 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 888 (1106)
Q Consensus 811 ~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~ 888 (1106)
..+..++|++.+..|.... .+.|..+++........+.........+++.+.+++++++-...+.|.+.++.......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 4478999998777777665 68899999887654443333334567899997556666666677899999987543333
Q ss_pred EecCcccCeeEEEEecCCCEEEEEc-CC-CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE--eC
Q 001295 889 KLKGHSKRITGLAFSHALNVLVSSG-AD-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE 964 (1106)
Q Consensus 889 ~l~~h~~~V~~l~~s~d~~~l~s~s-~D-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~d 964 (1106)
.+........++++.|.+..|..+. .. +.|...+++..... .+ ...+ ......++++|++..|..+ ..
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~---~~-~~~~----~~~PnGla~d~~~~~lY~aD~~~ 224 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR---II-ADTH----LFWPNGLTIDYAGRRMYWVDAKH 224 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE---ES-CCSS----CSCEEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE---EE-EECC----CCCcceEEEeCCCCEEEEEECCC
Confidence 3333445678999999766655544 34 67888887653211 11 1111 1245789999877766664 56
Q ss_pred CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295 965 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus 965 ~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
+.|..+|+........+. ........|++ ..+...++-...+.|..++..+|+.+..+.
T Consensus 225 ~~I~~~~~dG~~~~~~~~--~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 225 HVIERANLDGSHRKAVIS--QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TEEEEEETTSCSCEEEEC--SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CEEEEEeCCCCceEEEEe--CCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 789999987543322222 22446678888 345555555567888888877777666554
No 282
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.16 E-value=0.00051 Score=77.16 Aligned_cols=249 Identities=7% Similarity=0.015 Sum_probs=146.2
Q ss_pred CeeEEEEecC--CCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCC---C-cEEEEEeecc
Q 001295 812 AVPCFALSKN--DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---S-SIQIYNVRVD 884 (1106)
Q Consensus 812 ~v~~l~~s~~--~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~d---g-~v~iwd~~~~ 884 (1106)
....++++|+ +..|.++. .+.|+.+|..++..... .........+++++ +++++++.... . .+..++...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 4578999984 45555555 58899999987665443 33455689999999 77755543321 1 1333332221
Q ss_pred eE-EEEecCcccCeeEEEEec-CCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE
Q 001295 885 EV-KSKLKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 962 (1106)
Q Consensus 885 ~~-~~~l~~h~~~V~~l~~s~-d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 962 (1106)
.. ...+. .......+++.| +|.+.++-..++.|+.++..++.... ..... +.. .....++|+|+|++|.++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~-~~~~~--~~~---~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE-EEVMM--DTK---GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE-EEEEC--SCC---SSCEEEEECTTSSEEEEE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE-EEecc--CCC---CCcccEEEeCCCCEEEEE
Confidence 11 01111 234456789999 67776666677889999987654311 11111 111 123469999999966664
Q ss_pred --eCCeEEEEecC--CceEe--eecc----cCC---------CCCCeeEEEE---------CCCCCEEEEEEcCCeEEEE
Q 001295 963 --HETQLAIFETT--KLECV--KQWV----PRE---------SSAPITHATF---------SCDSQLVYACFLDATVCVF 1014 (1106)
Q Consensus 963 --~d~~v~i~d~~--~~~~~--~~~~----~~~---------h~~~v~~l~~---------s~d~~~l~t~s~Dg~i~vw 1014 (1106)
..+.|+.++.. ++... ..+. ..+ .-.....+++ .++|.+.++-...+.|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 56789998765 23211 1111 001 1224677999 7777777776677889999
Q ss_pred EcCCceeEEeeCCCc----ccCCC---CCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeec
Q 001295 1015 SAANLKLRCRINPSA----YLPAG---VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1070 (1106)
Q Consensus 1015 d~~~~~~~~~~~~~~----~~~~~---~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~ 1070 (1106)
+. +|.......... -...| ....--.|..+++.|.++.++++-..++.|+.++++
T Consensus 371 ~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 371 TP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 84 565443332111 00001 001123477999996578888877778888888764
No 283
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.15 E-value=0.00051 Score=77.25 Aligned_cols=247 Identities=9% Similarity=0.040 Sum_probs=143.6
Q ss_pred CeeEEEEec-CCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeC-CC----cEEEEEeecc
Q 001295 812 AVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DS----SIQIYNVRVD 884 (1106)
Q Consensus 812 ~v~~l~~s~-~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~-dg----~v~iwd~~~~ 884 (1106)
....++++| ++..|.++. .+.|+.+|..++.... +.........++|++ ++++|.++.. ++ .+.+++ ..+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~-~~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILT-RES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEE-GGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEe-CCC
Confidence 457899998 455666665 5789999998765443 333455688999999 7775554443 22 233344 333
Q ss_pred eEE--EEecCcccCeeEEEEec-CCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE
Q 001295 885 EVK--SKLKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 961 (1106)
Q Consensus 885 ~~~--~~l~~h~~~V~~l~~s~-d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 961 (1106)
... ..+. ......+++++| +|.++++-..++.|..++..++... ........ .....++|+|+|++|.+
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~--~~~~~~~~-----~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT--PLFTIQDS-----GWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE--EEEECSSS-----SCCEEEEECTTSSEEEE
T ss_pred ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE--EEEEcCCC-----CcceeEEEcCCCCEEEE
Confidence 221 2222 123467889999 6777777777888999998864321 11111111 24578999999996666
Q ss_pred E--eCCeEEEEecCC--ceE--eeeccc----CCC---------CCCee-EEEEC--------CCCCEEEEEEcCCeEEE
Q 001295 962 V--HETQLAIFETTK--LEC--VKQWVP----RES---------SAPIT-HATFS--------CDSQLVYACFLDATVCV 1013 (1106)
Q Consensus 962 ~--~d~~v~i~d~~~--~~~--~~~~~~----~~h---------~~~v~-~l~~s--------~d~~~l~t~s~Dg~i~v 1013 (1106)
+ ..+.|..++... +.. +..+.. .+. -.... .+++. ++|.+.++-...+.|+.
T Consensus 287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 4 567899887653 221 111110 010 11123 45553 34555565556678888
Q ss_pred EEcCCceeEEeeCCCc--ccC--CC---CCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeec
Q 001295 1014 FSAANLKLRCRINPSA--YLP--AG---VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1070 (1106)
Q Consensus 1014 wd~~~~~~~~~~~~~~--~~~--~~---~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~ 1070 (1106)
++ .+|.......... +.. .| ....--.|..+++.|+++.++++-..++.|+..+++
T Consensus 367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 88 5565443332100 000 01 001112577999998556777777777788887764
No 284
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.13 E-value=0.00064 Score=75.34 Aligned_cols=206 Identities=10% Similarity=-0.023 Sum_probs=133.7
Q ss_pred CCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEE
Q 001295 810 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 887 (1106)
Q Consensus 810 ~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~ 887 (1106)
...+..++|++.+..|.... .+.|..++.........+.........+++.+.+++++++-...+.|.+.++......
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~ 194 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 194 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence 34578999998777777665 6889999988765444343333456788998745666666666778888887654333
Q ss_pred EEecCcccCeeEEEEecCCCEEEEEcC-C-CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE--e
Q 001295 888 SKLKGHSKRITGLAFSHALNVLVSSGA-D-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--H 963 (1106)
Q Consensus 888 ~~l~~h~~~V~~l~~s~d~~~l~s~s~-D-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~ 963 (1106)
..+.........|++.|++..|..+.. . +.|...+++.... ..... .+. .....++++|++..|..+ .
T Consensus 195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~--~~~~~--~~~----~~PnGlavd~~~~~lY~aD~~ 266 (386)
T 3v65_B 195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR--RIIAD--THL----FWPNGLTIDYAGRRMYWVDAK 266 (386)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC--EEEEC--SSC----SCEEEEEEEGGGTEEEEEETT
T ss_pred EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc--EEEEE--CCC----CCeeeEEEeCCCCEEEEEECC
Confidence 333334456789999987776665543 3 5677777765321 11111 111 235789999877766664 5
Q ss_pred CCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295 964 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus 964 d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
.+.|..+|+........+. ........|++ ..+.++++-...+.|..++..+|+.+..+.
T Consensus 267 ~~~I~~~d~dG~~~~~~~~--~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 267 HHVIERANLDGSHRKAVIS--QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp TTEEEEECTTSCSCEEEEC--SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEEeCCCCeeEEEEE--CCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 6789999987543322222 22446678888 345555666677889999977787776665
No 285
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.09 E-value=0.0018 Score=71.92 Aligned_cols=208 Identities=6% Similarity=-0.045 Sum_probs=134.0
Q ss_pred CCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCC----ceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec
Q 001295 810 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 883 (1106)
Q Consensus 810 ~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~----~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~ 883 (1106)
...+..++|++.+..|..+. .+.|+.+++... .....+.........+++.+.+++++++-...+.|.+.++..
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 45678999999877777776 588999998752 222333334456788999874566666666778999999876
Q ss_pred ceEEEEecCcccCeeEEEEecCCCEEEEEcC--CCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE
Q 001295 884 DEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 961 (1106)
Q Consensus 884 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~--Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 961 (1106)
......+........+|++.|.+.+|+.+.. .+.|...+++..... .... .+. .....+++++++..|..
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~--~~~~--~~l----~~P~glavd~~~~~lY~ 262 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--SLVT--ENI----QWPNGITLDLLSGRLYW 262 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE--EEEC--SSC----SCEEEEEEETTTTEEEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE--EEEE--CCC----CceEEEEEEeCCCEEEE
Confidence 5444444434455789999997766665543 367888888763221 1111 111 24588999988777766
Q ss_pred E--eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295 962 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus 962 ~--~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
+ ..+.|..+|+....................|++. .+.++++-...+.|..+|..+|+.+..+.
T Consensus 263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 4 5678999998754433222211223456677773 33455566667889999988887766654
No 286
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.09 E-value=0.007 Score=65.19 Aligned_cols=193 Identities=12% Similarity=0.045 Sum_probs=112.4
Q ss_pred CCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceee-eecCCCCCeeEEEEecCCCceEEEeeCCCcEEE-EEe--ecceE
Q 001295 811 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQI-YNV--RVDEV 886 (1106)
Q Consensus 811 ~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~-~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~i-wd~--~~~~~ 886 (1106)
..+..+.+.+++..++++.+|.|.. ....++.-. ........+..+++.+ ++.+++++. +|.++. +|- .+.+.
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~~ 198 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWEP 198 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCEE
T ss_pred CCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCceeE
Confidence 3467788888887777776665422 122232222 2234456789999999 788887765 455444 332 23333
Q ss_pred EEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCe
Q 001295 887 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQ 966 (1106)
Q Consensus 887 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~ 966 (1106)
+. ......+..+++.+++..++. +.+|.+++++.+.++. ...+... .......+..+++.+++..++++.++.
T Consensus 199 ~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~t--W~~~~~~--~~~~~~~~~~v~~~~~~~~~~~g~~g~ 271 (327)
T 2xbg_A 199 HN--RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSEN--WGELLSP--LRRNSVGFLDLAYRTPNEVWLAGGAGA 271 (327)
T ss_dssp EE--CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEE--ECCCBCT--TSSCCSCEEEEEESSSSCEEEEESTTC
T ss_pred CC--CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCe--eEeccCC--cccCCcceEEEEecCCCEEEEEeCCCe
Confidence 32 235567889999999876654 4578777764332221 1111111 000112467889999999888888887
Q ss_pred EEEEecCCceEeeecccC-CCCCCeeEEEECCCCCEEEEEEcCCeEEEEE
Q 001295 967 LAIFETTKLECVKQWVPR-ESSAPITHATFSCDSQLVYACFLDATVCVFS 1015 (1106)
Q Consensus 967 v~i~d~~~~~~~~~~~~~-~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd 1015 (1106)
+ .+..+.++.-..+... .+...+.++.|.+++. +++++.+|.|.-++
T Consensus 272 i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 272 L-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp E-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred E-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 7 3444444432222211 2245788899986665 55556789877665
No 287
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.06 E-value=0.002 Score=71.22 Aligned_cols=215 Identities=10% Similarity=-0.036 Sum_probs=130.0
Q ss_pred eeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCC
Q 001295 345 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 424 (1106)
Q Consensus 345 ~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 424 (1106)
........+..++|++.+..|+.+-...+.|..++...+..... +.........+++.+.+
T Consensus 110 ~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~-------------------~~~~~~~p~glavd~~~ 170 (386)
T 3v65_B 110 LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV-------------------VSTGLESPGGLAVDWVH 170 (386)
T ss_dssp EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEE-------------------ECSSCSCCCCEEEETTT
T ss_pred EEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEE-------------------EeCCCCCccEEEEEeCC
Confidence 33344567899999987776777766778999999886543221 11112245678898855
Q ss_pred CEE-EEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCC-CcEEEEeCCCCceeEEEeccCC
Q 001295 425 SLF-GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-KTIKVWDATNGAKQYIFEGHEA 502 (1106)
Q Consensus 425 ~~l-as~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~h~~ 502 (1106)
..| ++-...+.|.+.++++..... .+.........+++.|.+.. ++++-... +.|...++..............
T Consensus 171 g~lY~~d~~~~~I~~~~~dg~~~~~---l~~~~l~~P~giavdp~~g~-ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~ 246 (386)
T 3v65_B 171 DKLYWTDSGTSRIEVANLDGAHRKV---LLWQSLEKPRAIALHPMEGT-IYWTDWGNTPRIEASSMDGSGRRIIADTHLF 246 (386)
T ss_dssp TEEEEEETTTTEEEECBTTSCSCEE---EECSSCSCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEECSSCS
T ss_pred CeEEEEcCCCCeEEEEeCCCCceEE---eecCCCCCCcEEEEEcCCCe-EEEeccCCCCEEEEEeCCCCCcEEEEECCCC
Confidence 554 444556788888887643221 12233356789999998775 34444444 7888888654333333333344
Q ss_pred CeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEE
Q 001295 503 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 582 (1106)
Q Consensus 503 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 582 (1106)
....+++++.. +.+.++-+..+.|..+|++.......+.........+++. .+..++
T Consensus 247 ~PnGlavd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~----------------------~~~ly~ 303 (386)
T 3v65_B 247 WPNGLTIDYAG-RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF----------------------EDSLYW 303 (386)
T ss_dssp CEEEEEEEGGG-TEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE----------------------TTEEEE
T ss_pred CeeeEEEeCCC-CEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE----------------------CCEEEE
Confidence 57788886543 3566666677889999887533332222222233344441 122344
Q ss_pred EEECCCeEEEEECCCcceeEEEc
Q 001295 583 AAGDDFSIKFWDMDSVQLLTSID 605 (1106)
Q Consensus 583 ~~~~d~~i~iwd~~~~~~~~~~~ 605 (1106)
+....+.|..++..+|+.+..+.
T Consensus 304 td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 304 TDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EETTTTEEEEEETTTCCSCEEEE
T ss_pred eeCCCCeEEEEECCCCcceEEEc
Confidence 45567788888876777666664
No 288
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.05 E-value=0.0027 Score=70.51 Aligned_cols=230 Identities=9% Similarity=0.052 Sum_probs=145.2
Q ss_pred CEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecc----eEEEEecCcccCee
Q 001295 823 SYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD----EVKSKLKGHSKRIT 898 (1106)
Q Consensus 823 ~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~----~~~~~l~~h~~~V~ 898 (1106)
.+|+.+....|+..++.......... ....+..++|++.++.++.+-...+.|+.+++... .....+........
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp CEEEEEETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred ceeEEeccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 46666667889999998765444443 45578999999855666666566788999988652 22233333445678
Q ss_pred EEEEecC-CCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEe---CCeEEEEecCC
Q 001295 899 GLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH---ETQLAIFETTK 974 (1106)
Q Consensus 899 ~l~~s~d-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~---d~~v~i~d~~~ 974 (1106)
.|++.+. +.+.++-...+.|.+.+++.... ...+. .+. .....+++.|.+.+|..+. .+.|...++..
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~--~~l~~--~~~----~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG 234 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKR--KTLFR--ENG----SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 234 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSE--EEEEE--CSS----CCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCce--EEEEe--CCC----CCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence 8999874 44555556678899999876432 11111 111 2458999999766665542 36788888875
Q ss_pred ceEeeecccCCCCCCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCC
Q 001295 975 LECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1053 (1106)
Q Consensus 975 ~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~ 1053 (1106)
........ ..-.....|++++++..|+.+. ..+.|..+|++.......+... ...-.|.+++.. .+.
T Consensus 235 ~~~~~~~~--~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--------~~l~~P~gl~v~--~~~ 302 (400)
T 3p5b_L 235 VDIYSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE--------KRLAHPFSLAVF--EDK 302 (400)
T ss_dssp CSCEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECS--------STTSSEEEEEEE--TTE
T ss_pred CccEEEEE--CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCC--------CCCCCCEEEEEe--CCE
Confidence 43322222 2245789999999888776664 4578999998754433222210 111235567764 356
Q ss_pred EEEEEeCCCcEEEEeecCCC
Q 001295 1054 EFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus 1054 ~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
++++-...+.|..++..+++
T Consensus 303 lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 303 VFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp EEEEESSSCSEEEEESSSCC
T ss_pred EEEecCCCCeEEEEEcCCCC
Confidence 77777777889988877776
No 289
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.04 E-value=0.0077 Score=64.47 Aligned_cols=224 Identities=10% Similarity=0.025 Sum_probs=127.5
Q ss_pred cCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEE-eCCCeEEEEEccCC---cee
Q 001295 372 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSRHIVQIYSYHGG---DEV 447 (1106)
Q Consensus 372 dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d~~v~iwd~~~~---~~~ 447 (1106)
...|+..|+.+.+.... +. .-.....++|++++..|..+ ..++.|..+++.+. ...
T Consensus 9 ~~~I~~i~~~~~~~~~~-------------------~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~ 68 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSL-------------------IP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY 68 (316)
T ss_dssp BSSEEEEETTSCCCEEE-------------------EC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C
T ss_pred CCeEEEEECCCcceEeh-------------------hc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCccc
Confidence 36789999887654321 11 23467899999876555544 45688999998861 222
Q ss_pred eeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecC-Ce
Q 001295 448 RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-GK 526 (1106)
Q Consensus 448 ~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-g~ 526 (1106)
.. .+.........+++.+.+.. ++++-...+.|.+.|+........+.........+++.+. ++.++++.... +.
T Consensus 69 ~~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~-~g~ly~~d~~~~~~ 144 (316)
T 1ijq_A 69 DT--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAK 144 (316)
T ss_dssp EE--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCE
T ss_pred EE--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCC-CCEEEEEccCCCCe
Confidence 21 12222345688999876664 5566667889999997654433333333456678887543 33455554433 67
Q ss_pred EEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEE-CCCeEEEEECCCcceeEEE-
Q 001295 527 IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSI- 604 (1106)
Q Consensus 527 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~- 604 (1106)
|...+++.................+++++++ ..|+.+. ..+.|..+|+.... ...+
T Consensus 145 I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~---------------------~~lY~~D~~~~~I~~~d~dg~~-~~~~~ 202 (316)
T 1ijq_A 145 IKKGGLNGVDIYSLVTENIQWPNGITLDLLS---------------------GRLYWVDSKLHSISSIDVNGGN-RKTIL 202 (316)
T ss_dssp EEEEETTSCCEEEEECSSCSCEEEEEEETTT---------------------TEEEEEETTTTEEEEEETTSCS-CEEEE
T ss_pred EEEEcCCCCCeEEEEECCCCCceEEEEeccC---------------------CEEEEEECCCCeEEEEecCCCc-eEEEe
Confidence 7777765322211111222334445555443 3455443 56789999986433 3333
Q ss_pred ccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 605 DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 605 ~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
...........+++. .+.++++-...+.|..++..++
T Consensus 203 ~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 203 EDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp ECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred ecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence 221122234567774 4556666666788888887666
No 290
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.03 E-value=0.00031 Score=84.40 Aligned_cols=246 Identities=13% Similarity=0.042 Sum_probs=139.0
Q ss_pred EEEEec-CCCEEEEEe-CC-----------eEEEEEcCCCceee--eecC-CCCCeeEEEEecCCCceEEEee-CCCcEE
Q 001295 815 CFALSK-NDSYVMSAS-GG-----------KISLFNMMTFKTMA--TFMP-PPPAATFLAFHPQDNNIIAIGM-DDSSIQ 877 (1106)
Q Consensus 815 ~l~~s~-~~~~l~~~s-dg-----------~i~vwd~~~~~~~~--~~~~-~~~~v~~l~~s~~d~~~la~g~-~dg~v~ 877 (1106)
.+++.+ ++++++.|+ +. .+.+||..+++... .+.. +.....++++.. +++++++|+ .+..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC-CCCEEEeCCCCCCceE
Confidence 567777 888888876 21 58899998765432 2222 233344577778 889999988 455899
Q ss_pred EEEeecceEEEEecCcccCe-eEEEEecCCCEEEEEc-CC-----CcEEEEeCCCcccccceeecccCCCCCCCCCCceE
Q 001295 878 IYNVRVDEVKSKLKGHSKRI-TGLAFSHALNVLVSSG-AD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV 950 (1106)
Q Consensus 878 iwd~~~~~~~~~l~~h~~~V-~~l~~s~d~~~l~s~s-~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 950 (1106)
+||..+.+-...-..+..+. .+++..+++++++.|+ .+ ..+.+||..+.+ ...+..... .+....-...
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~---W~~~~~~~~-~p~~~~~~~~ 344 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT---WTSLPNAKV-NPMLTADKQG 344 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE---EEEETTSCS-GGGCCCCTTG
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc---ceeCCCccc-cccccccccc
Confidence 99988765332222222222 3456667999999998 44 568999988743 111110000 0000000011
Q ss_pred EEcCCCcEEEE----------EeCCeEEEEecCCceEeeecccCC-------CCCCeeEEEEC-CCCCEEEEEEcCC---
Q 001295 951 QFHQDQIHFLV----------VHETQLAIFETTKLECVKQWVPRE-------SSAPITHATFS-CDSQLVYACFLDA--- 1009 (1106)
Q Consensus 951 ~~s~dg~~l~~----------~~d~~v~i~d~~~~~~~~~~~~~~-------h~~~v~~l~~s-~d~~~l~t~s~Dg--- 1009 (1106)
++..+++.++. +....+..||..+........... ....-.++.|. .++++++.|+.++
T Consensus 345 ~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~ 424 (656)
T 1k3i_A 345 LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD 424 (656)
T ss_dssp GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS
T ss_pred eeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCC
Confidence 22233333333 234568889988766433221110 01122444443 4788888887543
Q ss_pred --------eEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCC-----------CcEEEEeec
Q 001295 1010 --------TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----------GGVHVFEPL 1070 (1106)
Q Consensus 1010 --------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~D-----------g~v~vW~~~ 1070 (1106)
.|.+||..+..-.... ...++... .. ..++..| |+++++.|+.+ ..+.+||+.
T Consensus 425 ~~~~~~~~~v~~yd~~~~~W~~~~--~~~mp~~R----~~-~~~~~l~-~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~ 496 (656)
T 1k3i_A 425 SDATTNAHIITLGEPGTSPNTVFA--SNGLYFAR----TF-HTSVVLP-DGSTFITGGQRRGIPFEDSTPVFTPEIYVPE 496 (656)
T ss_dssp SBCCCCEEEEECCSTTSCCEEEEC--TTCCSSCC----BS-CEEEECT-TSCEEEECCBSBCCTTCCCSBCCCCEEEEGG
T ss_pred CCcCCcceEEEcCCCCCCCeeEEc--cCCCCCCc----cc-CCeEECC-CCCEEEECCcccCcCcCCCCcccceEEEcCC
Confidence 6888888877654332 01123221 11 1445566 68999999865 468999998
Q ss_pred CCC
Q 001295 1071 ESE 1073 (1106)
Q Consensus 1071 ~~~ 1073 (1106)
+.+
T Consensus 497 t~~ 499 (656)
T 1k3i_A 497 QDT 499 (656)
T ss_dssp GTE
T ss_pred CCc
Confidence 755
No 291
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.96 E-value=0.0019 Score=68.05 Aligned_cols=197 Identities=9% Similarity=0.152 Sum_probs=125.8
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecC---CCc---eEEEeeC---CCcEEEEEee--cceEEE
Q 001295 821 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ---DNN---IIAIGMD---DSSIQIYNVR--VDEVKS 888 (1106)
Q Consensus 821 ~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~---d~~---~la~g~~---dg~v~iwd~~--~~~~~~ 888 (1106)
...+++... .+.+.+||+ +++.++.+.. +.+..+.+-|. +++ ++++... +++|.+|++. +++ +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 444544444 688999999 7888888763 56777776661 122 2333333 5799999874 333 44
Q ss_pred EecC------cc-cCeeEEEE--ecC-CC-EEEEEcCCCcEEEEeCCC---cccccceeecccCCCCCCCCCCceEEEcC
Q 001295 889 KLKG------HS-KRITGLAF--SHA-LN-VLVSSGADSQLCVWSSDG---WEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 954 (1106)
Q Consensus 889 ~l~~------h~-~~V~~l~~--s~d-~~-~l~s~s~Dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 954 (1106)
.+.. .. ..+..+|+ ++. ++ +++....+|.+..|++.. +... .+.+..+.-. ..+..++..+
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~-~~lVR~f~lg----sq~EgcvvDd 189 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYIS-GKKVRAFKMN----SQTEGMAADD 189 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEE-EEEEEEEECS----SCEEEEEEET
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCccc-ceEEEEecCC----CCcceEEEcC
Confidence 4421 11 56778888 664 44 688888999999999843 2221 2222222211 3578899999
Q ss_pred CCcEEEEE-eCCeEEEEecC-----CceEeeecccCCCCCCeeEEEE--CCCCC-EEEEEE-cCCeEEEEEcC-CceeEE
Q 001295 955 DQIHFLVV-HETQLAIFETT-----KLECVKQWVPRESSAPITHATF--SCDSQ-LVYACF-LDATVCVFSAA-NLKLRC 1023 (1106)
Q Consensus 955 dg~~l~~~-~d~~v~i~d~~-----~~~~~~~~~~~~h~~~v~~l~~--s~d~~-~l~t~s-~Dg~i~vwd~~-~~~~~~ 1023 (1106)
....|.++ .+..|..|+.+ +++.+..+....-...+..|++ .++++ ||++++ .+.+..|||.+ +.+.+.
T Consensus 190 ~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg 269 (355)
T 3amr_A 190 EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVA 269 (355)
T ss_dssp TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEE
Confidence 88888886 44567777754 3556655432222347888888 56666 777666 56799999997 777877
Q ss_pred eeC
Q 001295 1024 RIN 1026 (1106)
Q Consensus 1024 ~~~ 1026 (1106)
.+.
T Consensus 270 ~f~ 272 (355)
T 3amr_A 270 DFR 272 (355)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 292
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.90 E-value=0.0036 Score=70.22 Aligned_cols=256 Identities=11% Similarity=0.083 Sum_probs=137.6
Q ss_pred CCcEEEEEec-CCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEE
Q 001295 351 SSPMSMDFHP-VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 429 (1106)
Q Consensus 351 ~~v~~~~~sp-~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 429 (1106)
.....++++| ++..|+++-. .+.|+.+|..++.... +.........++|+++|++|.+
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~-~~~I~~id~~~~~v~~--------------------~~~~~~~P~~ia~d~~G~~lyv 195 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGE-QHPTRLIDFEKEYVST--------------------VYSGLSKVRTICWTHEADSMII 195 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEB-TEEEEEEETTTTEEEE--------------------EECCCSCEEEEEECTTSSEEEE
T ss_pred CCCCEEEECCCCCCeEEEEeC-CCcEEEEECCCCEEEE--------------------EecCCCCcceEEEeCCCCEEEE
Confidence 4678999998 4554555543 3889999988765432 1123446889999999996666
Q ss_pred EeC-C---C-eEEEEEccCCceeeeeeeeccccCCeeEEEEcC-CCCceEEEEecCCCcEEEEeCCCCceeEEEec-cCC
Q 001295 430 AYS-R---H-IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFEG-HEA 502 (1106)
Q Consensus 430 ~~~-d---~-~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-h~~ 502 (1106)
+.. + . .+.+.+. .+.... ...+. .......++++| ++. ++++-..++.|..+|..++........ ...
T Consensus 196 ad~~~~~~~~~v~~~~~-~g~~~~-~~~l~-~~~~p~giavdp~~g~--lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~ 270 (430)
T 3tc9_A 196 TNDQNNNDRPNNYILTR-ESGFKV-ITELT-KGQNCNGAETHPINGE--LYFNSWNAGQVFRYDFTTQETTPLFTIQDSG 270 (430)
T ss_dssp EECCSCTTSEEEEEEEG-GGTSCS-EEEEE-ECSSCCCEEECTTTCC--EEEEETTTTEEEEEETTTTEEEEEEECSSSS
T ss_pred EeCCCCcccceEEEEeC-CCceee-eeeec-cCCCceEEEEeCCCCE--EEEEECCCCEEEEEECCCCcEEEEEEcCCCC
Confidence 543 1 2 3434443 333221 01222 123467889999 565 667776788999999877654222221 223
Q ss_pred CeEEEeccccCCce-EEEEEecCCeEEEEeCCCCCc----eeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEc--
Q 001295 503 PVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGS----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD-- 575 (1106)
Q Consensus 503 ~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~-- 575 (1106)
....++|+++ ++ ++++-...+.|..++.+.... ...+......- .+ .++.. ....-..+...+...
T Consensus 271 ~P~gia~~pd--G~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~---g~-~dg~~-~~a~~~~P~~gv~v~~~ 343 (430)
T 3tc9_A 271 WEFHIQFHPS--GNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAK---DW-VDGVG-KKARMHAPRQGTFVKNP 343 (430)
T ss_dssp CCEEEEECTT--SSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCB---CC-BCEEG-GGCBBSSEEEEEEEECG
T ss_pred cceeEEEcCC--CCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCC---CC-CCCCC-cceEeCCCcceEEEccc
Confidence 4667887654 45 555666788999987764211 11111110000 00 00000 000000111133332
Q ss_pred ------CCCCEEEEEECCCeEEEEECCCcceeEEEcc---------CC------CCCCcCeEEEccC-CCEEEEEeCCCc
Q 001295 576 ------TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA---------DG------GLPASPRIRFNKD-GCLLAVSTNDNG 633 (1106)
Q Consensus 576 ------~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---------~~------~~~~v~~v~~s~~-~~~l~~~~~dg~ 633 (1106)
+++..+++-...+.|+.++. +|........ .+ .......++++++ +.++++-..++.
T Consensus 344 ~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~r 422 (430)
T 3tc9_A 344 AYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRR 422 (430)
T ss_dssp GGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTE
T ss_pred cccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCe
Confidence 33455555556778888883 5544333311 00 0123567899984 666666556677
Q ss_pred EEEEEcc
Q 001295 634 IKILATS 640 (1106)
Q Consensus 634 i~iwd~~ 640 (1106)
|+.++++
T Consensus 423 Ir~i~~e 429 (430)
T 3tc9_A 423 IRKIGYE 429 (430)
T ss_dssp EEEEEEC
T ss_pred EEEEccC
Confidence 8877653
No 293
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.90 E-value=0.0021 Score=68.75 Aligned_cols=228 Identities=10% Similarity=0.020 Sum_probs=140.3
Q ss_pred EEEEEeCCeEEEEEcCCCce-eeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEE-EEecCcccCeeEEE
Q 001295 824 YVMSASGGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLA 901 (1106)
Q Consensus 824 ~l~~~sdg~i~vwd~~~~~~-~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~-~~l~~h~~~V~~l~ 901 (1106)
+|+.+....|+.+++..... ...+........+++|.+.++.++.+-...+.|+.+++..+... ..+........+++
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gla 85 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLA 85 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEE
T ss_pred EEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEE
Confidence 45555567899999986531 11111122356789999855666666667789999998765321 12222234567899
Q ss_pred EecCC-CEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEe---CCeEEEEecCCceE
Q 001295 902 FSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH---ETQLAIFETTKLEC 977 (1106)
Q Consensus 902 ~s~d~-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~---d~~v~i~d~~~~~~ 977 (1106)
+.+.+ .+.++-...+.|.+++++.... ..... .+. .....+++.|.+..|..+. .+.|..++......
T Consensus 86 vd~~~g~ly~~d~~~~~I~~~~~dG~~~--~~l~~--~~~----~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~ 157 (318)
T 3sov_A 86 CDWLGEKLYWTDSETNRIEVSNLDGSLR--KVLFW--QEL----DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR 157 (318)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSC--EEEEC--SSC----SSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC
T ss_pred EEcCCCeEEEEECCCCEEEEEECCCCcE--EEEEe--CCC----CCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe
Confidence 98754 4555556678899999876321 11111 111 2458899999766665543 46788888764332
Q ss_pred eeecccCCCCCCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEE
Q 001295 978 VKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1056 (1106)
Q Consensus 978 ~~~~~~~~h~~~v~~l~~s~d~~~l~t~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~ 1056 (1106)
..+.. ..-.....|+|++++..|+.+. ..+.|..+|++.......+. + ..-.|..+++.. +.+++
T Consensus 158 -~~~~~-~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-------~---~~~~P~glav~~--~~lyw 223 (318)
T 3sov_A 158 -FIIIN-SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-------G---SLPHPFALTLFE--DILYW 223 (318)
T ss_dssp -EEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------S---CCSCEEEEEEET--TEEEE
T ss_pred -EEEEE-CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec-------C---CCCCceEEEEeC--CEEEE
Confidence 22211 1134678999999777766554 56789999987533322221 0 113355777753 46677
Q ss_pred EEeCCCcEEEEeecCCC
Q 001295 1057 LGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus 1057 t~~~Dg~v~vW~~~~~~ 1073 (1106)
+-...+.|..++..+++
T Consensus 224 td~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 224 TDWSTHSILACNKYTGE 240 (318)
T ss_dssp EETTTTEEEEEETTTCC
T ss_pred EecCCCeEEEEECCCCC
Confidence 77677889999987777
No 294
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.86 E-value=0.00014 Score=87.16 Aligned_cols=207 Identities=6% Similarity=-0.040 Sum_probs=127.5
Q ss_pred CCeeEEEEecCCCEEEEEe--CCeEEEEEcCC----CceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecc
Q 001295 811 EAVPCFALSKNDSYVMSAS--GGKISLFNMMT----FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 884 (1106)
Q Consensus 811 ~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~----~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~ 884 (1106)
..+..++|++.+..|..+. .+.|+.+++.+ ......+.........|++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 4467889999888887776 57899999875 22222222222345678888646666666666789999998755
Q ss_pred eEEEEecCcccCeeEEEEecCCCEEEEEcC-C-CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE
Q 001295 885 EVKSKLKGHSKRITGLAFSHALNVLVSSGA-D-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 962 (1106)
Q Consensus 885 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-D-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 962 (1106)
.....+.........|++.|++.+|+.+.. . +.|.+.+++.... ..++. .. ......|+|+|++..|..+
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~--~~l~~--~~----l~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YSLVT--EN----IQWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC--CEESC--SS----CSSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe--eEEEe--CC----CCCccEEEEeccCCEEEEE
Confidence 433333333345678999987666555443 2 6777777764221 11111 11 1245789999987666553
Q ss_pred --eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295 963 --HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus 963 --~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
..+.|.++++........+...........|++..+ .++++....+.|..++..+|+.+..+.
T Consensus 558 D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 567899999875433222221111233455666544 445555567899999999999887775
No 295
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.86 E-value=0.005 Score=69.08 Aligned_cols=253 Identities=13% Similarity=0.104 Sum_probs=137.5
Q ss_pred CCcEEEEEecC--CCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295 351 SSPMSMDFHPV--QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 428 (1106)
Q Consensus 351 ~~v~~~~~sp~--g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 428 (1106)
.....++|+|+ +..|+++ ...+.|+.+|..+++... +.........++|+++|++++
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g~v~~--------------------~~~~~~~P~giavd~dG~lyV 197 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQYVDI--------------------KTTNIGQCADVNFTLNGDMVV 197 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEE-CBTSCEEEEETTTTEEEE--------------------ECCCCSCEEEEEECTTCCEEE
T ss_pred CCCceEEEccccCCCEEEEE-eCCCCEEEEECCCCEEEE--------------------eecCCCCccEEEECCCCCEEE
Confidence 45779999995 3334554 333899999998776543 122344689999999999555
Q ss_pred EEeCC---Ce-EEEEEccCCceeeeeeeeccccCCeeEEEEcC-CCCceEEEEecCCCcEEEEeCCCCceeEEE-ec-cC
Q 001295 429 VAYSR---HI-VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIF-EG-HE 501 (1106)
Q Consensus 429 s~~~d---~~-v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~-h~ 501 (1106)
+.... .. +...+...+.... ..+. .-.....+++.| ++. ++++-..++.|+.+|..++.....+ .. ..
T Consensus 198 ad~~~~~~~~gv~~~~~~~~~~~~--~~~~-~~~~P~giavd~~~G~--lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~ 272 (433)
T 4hw6_A 198 VDDQSSDTNTGIYLFTRASGFTER--LSLC-NARGAKTCAVHPQNGK--IYYTRYHHAMISSYDPATGTLTEEEVMMDTK 272 (433)
T ss_dssp EECCSCTTSEEEEEECGGGTTCCE--EEEE-ECSSBCCCEECTTTCC--EEECBTTCSEEEEECTTTCCEEEEEEECSCC
T ss_pred EcCCCCcccceEEEEECCCCeecc--cccc-ccCCCCEEEEeCCCCe--EEEEECCCCEEEEEECCCCeEEEEEeccCCC
Confidence 44321 22 3333333221110 1111 234567789999 565 5666667789999998877763333 21 12
Q ss_pred CCeEEEeccccCCce-EEEEEecCCeEEEEeCCCCCc----eeEeeCC-CCeeEEEEEecCCCeEEEeeeccceeEEEE-
Q 001295 502 APVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGS----RVDYEAP-GRWCTTMAYSADGTRTYQGFRKRSLGVVQF- 574 (1106)
Q Consensus 502 ~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~----~~~~~~~-~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~- 574 (1106)
..-..++|+++ ++ +.++-...+.|+.++++.... ...+.+. ...- ..++.. ....-..-..+++
T Consensus 273 ~~~~~ia~dpd--G~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g-----~~dg~~--~~a~~~~P~giav~ 343 (433)
T 4hw6_A 273 GSNFHIVWHPT--GDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPG-----WVDGMG--TGARLWGPNQGIFV 343 (433)
T ss_dssp SSCEEEEECTT--SSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCC-----CBCEEG--GGSBCSSEEEEEEE
T ss_pred CCcccEEEeCC--CCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCc-----cCCCcc--cceEEcCCccEEEE
Confidence 22345777554 45 555666678999988763211 1111111 0000 000000 0000012234555
Q ss_pred --------cCCCCEEEEEECCCeEEEEECCCcceeEEEccCCC----------------CCCcCeEEEc-cCCCEEEEEe
Q 001295 575 --------DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----------------LPASPRIRFN-KDGCLLAVST 629 (1106)
Q Consensus 575 --------~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----------------~~~v~~v~~s-~~~~~l~~~~ 629 (1106)
.++++.+++-...+.|+.++. +|... ++.+... ......++++ ++|.++++-.
T Consensus 344 ~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~ 421 (433)
T 4hw6_A 344 KNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDC 421 (433)
T ss_dssp ECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEG
T ss_pred ccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeC
Confidence 555566666666788888885 55433 3322111 1234578888 5666666666
Q ss_pred CCCcEEEEEcc
Q 001295 630 NDNGIKILATS 640 (1106)
Q Consensus 630 ~dg~i~iwd~~ 640 (1106)
.++.|+.++++
T Consensus 422 ~n~rIr~i~~e 432 (433)
T 4hw6_A 422 DNHRVRKIAPE 432 (433)
T ss_dssp GGTEEEEEEEC
T ss_pred CCCEEEEEecC
Confidence 67778877653
No 296
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.83 E-value=0.0061 Score=68.27 Aligned_cols=253 Identities=8% Similarity=-0.001 Sum_probs=146.5
Q ss_pred CeeEEEEec-CCCEEEEEe--CCeEEEEEcCCCceeeeecCC---CCCeeEEEE-------ecCCCceEEEeeCCC----
Q 001295 812 AVPCFALSK-NDSYVMSAS--GGKISLFNMMTFKTMATFMPP---PPAATFLAF-------HPQDNNIIAIGMDDS---- 874 (1106)
Q Consensus 812 ~v~~l~~s~-~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~---~~~v~~l~~-------s~~d~~~la~g~~dg---- 874 (1106)
....|+|+| +...|.++. .+.|++.|..++......... ......++| ++ ++..|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 467899998 455555555 367999998876655443321 235889999 99 777555554443
Q ss_pred ---cEEEEEeec-ceEE-----EEecCcccCeeEEEEecC-CCEEEEEcCCCcEEEEeCC-------Cccc------c--
Q 001295 875 ---SIQIYNVRV-DEVK-----SKLKGHSKRITGLAFSHA-LNVLVSSGADSQLCVWSSD-------GWEK------Q-- 929 (1106)
Q Consensus 875 ---~v~iwd~~~-~~~~-----~~l~~h~~~V~~l~~s~d-~~~l~s~s~Dg~i~vwd~~-------~~~~------~-- 929 (1106)
.|.+++... +... ..+.. -.....++++|+ +.++++-..++.|..+|++ ++.. .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 266665443 2221 12221 123467889994 5566667778889999987 4432 0
Q ss_pred --cceeecccCCCCCCCCCCceEEEcCCCcEEEEE--eCCeEEEEec--CCceE-----ee-ecccCCC---------CC
Q 001295 930 --KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFET--TKLEC-----VK-QWVPRES---------SA 988 (1106)
Q Consensus 930 --~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~d~~v~i~d~--~~~~~-----~~-~~~~~~h---------~~ 988 (1106)
...+...... .....++|+|+|++|.++ ....|+.++. .++.. +. .+...++ -.
T Consensus 298 g~~~~l~~~~~~-----~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~ 372 (496)
T 3kya_A 298 NTFKQLFTIADP-----SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN 372 (496)
T ss_dssp TTEEEEEECSSS-----SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred cccceeEecCCC-----CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence 0011222111 245789999999965553 5678888654 33322 11 1111111 11
Q ss_pred Cee-EEEEC-------CCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcc-----------cCCC---CCCCCccceEEE
Q 001295 989 PIT-HATFS-------CDSQLVYACFLDATVCVFSAANLKLRCRINPSAY-----------LPAG---VSSSNVHPLVIA 1046 (1106)
Q Consensus 989 ~v~-~l~~s-------~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~-----------~~~~---~~~~~v~~~~~~ 1046 (1106)
... .++.. ++|.+.++-.....|+.++ .+|.. .++..... ...| ....--.|..|+
T Consensus 373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa 450 (496)
T 3kya_A 373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV 450 (496)
T ss_dssp SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE
T ss_pred CCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEE
Confidence 234 45554 4566666666778899998 56643 33321100 0011 001123477999
Q ss_pred EeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295 1047 AHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus 1047 ~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
+.++++.++++-..+..|+.+++....
T Consensus 451 vd~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 451 YDDVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred EECCCCEEEEEeCCCCEEEEEECCCCc
Confidence 998447777777778899999987765
No 297
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.79 E-value=0.0052 Score=68.84 Aligned_cols=253 Identities=8% Similarity=0.004 Sum_probs=139.2
Q ss_pred ceEEEEEcC-CCceEEEeec-CceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEE----
Q 001295 745 KISRLIFTN-SGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL---- 818 (1106)
Q Consensus 745 ~i~~~~~s~-~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~---- 818 (1106)
....++|+| +...|+++.. .+.|++.|+. ++.+....-.+.........++|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~----------------------~~~v~~l~~~~~~~~~~p~~ia~~~~~ 197 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLK----------------------NRMLSSPLNINTIPTNRIRSIAFNKKI 197 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETT----------------------TTEEEEEECCTTSSCSBEEEEEECCCB
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECC----------------------CCEEEEEEccCccccCCCcEEEEeecc
Confidence 457889998 3444555544 4566666544 22222111011112345889999
Q ss_pred ---ecCCCEEEEEe-CC-------eEEEEEcCC-Ccee-----eeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEe
Q 001295 819 ---SKNDSYVMSAS-GG-------KISLFNMMT-FKTM-----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 881 (1106)
Q Consensus 819 ---s~~~~~l~~~s-dg-------~i~vwd~~~-~~~~-----~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~ 881 (1106)
++++++|+++. .+ .|.+++... +... ..+.. ......++++|+++.++++-..++.|+.+|+
T Consensus 198 ~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~ 276 (496)
T 3kya_A 198 EGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDL 276 (496)
T ss_dssp TTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred cccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence 99999777776 32 266665443 2221 12221 1234678889966777777778889999999
Q ss_pred e-------cceE-----------EEEe-c-CcccCeeEEEEecCCCEE-EEEcCCCcEEEEeCCCc--ccccceeecc--
Q 001295 882 R-------VDEV-----------KSKL-K-GHSKRITGLAFSHALNVL-VSSGADSQLCVWSSDGW--EKQKNRFLQI-- 936 (1106)
Q Consensus 882 ~-------~~~~-----------~~~l-~-~h~~~V~~l~~s~d~~~l-~s~s~Dg~i~vwd~~~~--~~~~~~~~~~-- 936 (1106)
. ++.. ...+ . +....-+.|+|+|+|++| ++-+....|+.++.+.. .......+.-
T Consensus 277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~ 356 (496)
T 3kya_A 277 VDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGY 356 (496)
T ss_dssp HHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBT
T ss_pred ccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCC
Confidence 7 4543 1121 1 122345789999999954 44456678888665431 1100011110
Q ss_pred -cCCCCC------CCCCCc-eEEEc-------CCCcEEEE-EeCCeEEEEecCCceEeeecccC------------C---
Q 001295 937 -PTGRTP------TAQSDT-RVQFH-------QDQIHFLV-VHETQLAIFETTKLECVKQWVPR------------E--- 985 (1106)
Q Consensus 937 -~~~~~~------~~~~i~-~~~~s-------~dg~~l~~-~~d~~v~i~d~~~~~~~~~~~~~------------~--- 985 (1106)
..+... .-.... .++.. ++|.++++ .....|+.++. ++.. .++... +
T Consensus 357 g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~v-~TiaG~g~~~~~~~~~~~G~~d 434 (496)
T 3kya_A 357 KQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGIV-STYAGRGASTSLADGNQWGTDD 434 (496)
T ss_dssp TBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCBE-EEEEESCTTHHHHHSCSCCCCC
T ss_pred CCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCCE-EEEecccccccccCccccccCC
Confidence 011110 001233 34444 45666666 46788999984 4533 333211 1
Q ss_pred -------CCCCeeEEEECCC-CCEEEEEEcCCeEEEEEcCCceeE
Q 001295 986 -------SSAPITHATFSCD-SQLVYACFLDATVCVFSAANLKLR 1022 (1106)
Q Consensus 986 -------h~~~v~~l~~s~d-~~~l~t~s~Dg~i~vwd~~~~~~~ 1022 (1106)
.-.....|+++++ |.+.++=.....|+.++++.....
T Consensus 435 G~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 435 GDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp EETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred CCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 1134678888886 666665566778888887765444
No 298
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.78 E-value=0.0082 Score=72.32 Aligned_cols=208 Identities=6% Similarity=-0.043 Sum_probs=130.2
Q ss_pred CCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCC----ceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec
Q 001295 810 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 883 (1106)
Q Consensus 810 ~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~----~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~ 883 (1106)
...+..+++++.+..|..+. .+.|+.+++... .....+.........|++.+.+++++++-...+.|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 45678899998777776665 588999998753 222333334456788999984556777767788999999875
Q ss_pred ceEEEEecCcccCeeEEEEecCCCEEEEEcC-C-CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE
Q 001295 884 DEVKSKLKGHSKRITGLAFSHALNVLVSSGA-D-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 961 (1106)
Q Consensus 884 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-D-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 961 (1106)
......+........+|++.|.+.+|+.+.. + +.|.+.+++.... ..++. .+ . .....|++++.+..|..
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~--~~lv~--~~-l---~~P~GLavD~~~~~LYw 574 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YSLVT--EN-I---QWPNGITLDLLSGRLYW 574 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE--EEEEC--SS-C---SCEEEEEEETTTTEEEE
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce--EEEEe--CC-C---CCceEEEEecCCCeEEE
Confidence 4433333344456889999998766666553 2 6788888876332 11111 11 1 24688999987776666
Q ss_pred E--eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295 962 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus 962 ~--~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
+ ....|..+++..............-.....|++..+ .+.++-...+.|...|..+|+.+..+.
T Consensus 575 aD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 575 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEEEEEeCCCCcceEEee
Confidence 4 557899999875544333322122334567776433 334444456788888887776655553
No 299
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.74 E-value=0.012 Score=62.75 Aligned_cols=209 Identities=12% Similarity=0.025 Sum_probs=124.4
Q ss_pred CCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCC-EEEE
Q 001295 351 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS-LFGV 429 (1106)
Q Consensus 351 ~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~las 429 (1106)
..+.+++|.+.+..|+.+-...+.|..++...+..... ++...-.....+++.+.+. +.++
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~------------------~~~~~l~~p~glavd~~~g~ly~~ 96 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGEKLYWT 96 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE------------------EEEECCSCCCEEEEETTTTEEEEE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE------------------EEcCCCCCccEEEEEcCCCeEEEE
Confidence 45779999997766777766778899999876532110 0111122466789987544 4455
Q ss_pred EeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEe-cCCCcEEEEeCCCCceeEEE-eccCCCeEEE
Q 001295 430 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIF-EGHEAPVYSV 507 (1106)
Q Consensus 430 ~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~ 507 (1106)
-...+.|.++++++..... .+.........+++.|.+.. ++++- +..+.|...++. |.....+ ...-.....+
T Consensus 97 d~~~~~I~~~~~dG~~~~~---l~~~~~~~P~giavdp~~g~-ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~Pngl 171 (318)
T 3sov_A 97 DSETNRIEVSNLDGSLRKV---LFWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGL 171 (318)
T ss_dssp ETTTTEEEEEETTSCSCEE---EECSSCSSEEEEEEEGGGTE-EEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEE
T ss_pred ECCCCEEEEEECCCCcEEE---EEeCCCCCccEEEEeCCCCE-EEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCccEE
Confidence 5567889999987643221 12233456789999987664 33333 346788888865 3333333 2333456788
Q ss_pred eccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECC
Q 001295 508 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 587 (1106)
Q Consensus 508 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 587 (1106)
++++.. +.+.++-+..+.|..+|++.................+++.. +..+.+-...
T Consensus 172 avd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~----------------------~~lywtd~~~ 228 (318)
T 3sov_A 172 TLDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE----------------------DILYWTDWST 228 (318)
T ss_dssp EEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET----------------------TEEEEEETTT
T ss_pred EEeccC-CEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC----------------------CEEEEEecCC
Confidence 886543 35666666788899999874333222222222333333321 1234444466
Q ss_pred CeEEEEECCCcceeEEEc
Q 001295 588 FSIKFWDMDSVQLLTSID 605 (1106)
Q Consensus 588 ~~i~iwd~~~~~~~~~~~ 605 (1106)
+.|..++..+|+....+.
T Consensus 229 ~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 229 HSILACNKYTGEGLREIH 246 (318)
T ss_dssp TEEEEEETTTCCSCEEEE
T ss_pred CeEEEEECCCCCceEEEe
Confidence 788888887777665554
No 300
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.62 E-value=0.083 Score=54.37 Aligned_cols=248 Identities=8% Similarity=0.078 Sum_probs=157.1
Q ss_pred EEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCCC
Q 001295 355 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 434 (1106)
Q Consensus 355 ~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 434 (1106)
+.-.+|..+ ++|.-. ..++.|+|+++.+++....+ ...|..=.|-.+. .|+..+ +.
T Consensus 71 sAIMnP~~~-ViALra-g~~LQiFnletK~klks~~~--------------------~e~VvfWkWis~~-~L~lVT-~t 126 (365)
T 2xzh_A 71 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DN 126 (365)
T ss_dssp EEEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCEEEEEECSSS-EEEEEE-SS
T ss_pred eeeeCCCcc-EEEEec-CCeEEEechHHhhhhcceec--------------------CCccEEEEecCCC-eEEEEc-CC
Confidence 445688887 577655 67899999999988875322 2367777776544 555554 46
Q ss_pred eEEEEEccCCceeeeeeeecccc----CCeeEEEEcCCCCceEEEEec------CCCcEEEEeCCCCceeEEEeccCCCe
Q 001295 435 IVQIYSYHGGDEVRQHLEIDAHV----GGVNDIAFSHPNKQLCVITCG------DDKTIKVWDATNGAKQYIFEGHEAPV 504 (1106)
Q Consensus 435 ~v~iwd~~~~~~~~~~~~l~~h~----~~V~~~~~s~d~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~h~~~v 504 (1106)
.|.-|++.+...... .+..|. ..|..-..+++.++ ++++|= -.|.+.+|..+. +.-+.++||.+.-
T Consensus 127 aVyHWs~~~~s~P~k--vFdR~~~L~~~QIInY~~d~~~kW-~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F 202 (365)
T 2xzh_A 127 AVYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASF 202 (365)
T ss_dssp EEEEEESSTTCCCEE--EEECCGGGTTCEEEEEEECTTSCE-EEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEE
T ss_pred cEEEEcccCCCCCce--eeecchhcccceEEEEEECCCCCE-EEEEeEeccCCccceeEEEEeecc-cccceeeeeeeee
Confidence 699999986443322 343332 35777777888886 333332 247788999654 4467888887766
Q ss_pred EEEeccccCCce-EEEEEec---CCeEEEEeCCCC-CceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCC
Q 001295 505 YSVCPHHKENIQ-FIFSTAL---DGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 579 (1106)
Q Consensus 505 ~~~~~~~~~~~~-~l~s~~~---dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~ 579 (1106)
..+.+....... +++.+.. .+.+++-++... ... ..-......+.|.|+.. ..--..+..++.-.
T Consensus 203 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~---~~f~kk~vdi~fppea~-------~DFPVamqvs~kyg 272 (365)
T 2xzh_A 203 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN---QPFPKKAVDVFFPPEAQ-------NDFPVAMQISEKHD 272 (365)
T ss_dssp EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTC---CCCCCEEEEECCCTTCT-------TCCEEEEEEETTTT
T ss_pred EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCC---CCcccccceeeCCcccc-------CCceEEEEecccCC
Confidence 555543332222 3333333 258888888543 111 11222345555666533 12344566777777
Q ss_pred EEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 580 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 580 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
.+.....-|.|++||+.++.++..-+.... .|...+.+.+..-++.....|.|.-..++..
T Consensus 273 viyviTK~G~ihlyDleTgt~i~~nrIS~d--~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 273 VVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred EEEEEeCCcEEEEEEcccCcEEEEeccCCC--ceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 888899999999999999999987765533 4555555555455566668888887777665
No 301
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.59 E-value=0.011 Score=62.41 Aligned_cols=189 Identities=12% Similarity=0.127 Sum_probs=117.9
Q ss_pred ceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecC----CC---E-EEEEcC--CCcEEEEeCCCcccccceee
Q 001295 865 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA----LN---V-LVSSGA--DSQLCVWSSDGWEKQKNRFL 934 (1106)
Q Consensus 865 ~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d----~~---~-l~s~s~--Dg~i~vwd~~~~~~~~~~~~ 934 (1106)
.+++.....+-+.+||+ +|+.++.+.. +.++.|..-|+ |+ + +++.-. +++|.+|+++..... +
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~----l 113 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT----L 113 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC----E
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc----e
Confidence 45555566788999999 8888888864 56777777663 22 2 233333 578999987532111 1
Q ss_pred cccCCC--C--CCCCCCceEEE--cCC-Cc-EEEE-EeCCeEEEEec-------CCceEeeecccCCCCCCeeEEEECCC
Q 001295 935 QIPTGR--T--PTAQSDTRVQF--HQD-QI-HFLV-VHETQLAIFET-------TKLECVKQWVPRESSAPITHATFSCD 998 (1106)
Q Consensus 935 ~~~~~~--~--~~~~~i~~~~~--s~d-g~-~l~~-~~d~~v~i~d~-------~~~~~~~~~~~~~h~~~v~~l~~s~d 998 (1106)
...... . .....+..+++ +|. ++ ++.+ ..++.+..|++ .+.+.++.+.. .+.+-.+...+.
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---gsq~EgcvvDd~ 190 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---NSQTEGMAADDE 190 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---SSCEEEEEEETT
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---CCCcceEEEcCC
Confidence 111110 0 00135677888 774 54 4444 57789999988 34567787765 357889999999
Q ss_pred CCEEEEEEcCCeEEEEEcC-----CceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCC-EEEEEe-CCCcEEEEeec
Q 001295 999 SQLVYACFLDATVCVFSAA-----NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPL 1070 (1106)
Q Consensus 999 ~~~l~t~s~Dg~i~vwd~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~-~l~t~~-~Dg~v~vW~~~ 1070 (1106)
...|+.+-+|.-|..++.+ +++.+..+. .++-...+.-+.+-..+ +++ +|++++ .++++.|||..
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~------~g~l~aDvEGLai~~~~-~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD------GRHLTRDIEGLTIYYAA-DGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS------SSSBCSCEEEEEEEECG-GGCEEEEEEEGGGTEEEEEESS
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEec------CCccccCcceEEEEecC-CCCEEEEEEcCCCCEEEEEECC
Confidence 9999999998766666644 455665543 11112224533443344 445 555555 67899999996
No 302
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.51 E-value=0.12 Score=53.28 Aligned_cols=95 Identities=11% Similarity=0.073 Sum_probs=66.7
Q ss_pred CeEEEEEcCCC---ceee-----e-e-c--CCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCee
Q 001295 831 GKISLFNMMTF---KTMA-----T-F-M--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 898 (1106)
Q Consensus 831 g~i~vwd~~~~---~~~~-----~-~-~--~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 898 (1106)
++++|.++... .... . + . ...+-..++..|+ .-.++..-+.-|.|++||+.++.++..-+-..+.|.
T Consensus 227 ~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~-kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF 305 (365)
T 2xzh_A 227 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF 305 (365)
T ss_dssp EEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred cEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecc-cCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceE
Confidence 68999998532 1110 1 1 1 1233456788888 666888889999999999999999988777777887
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEeCCCc
Q 001295 899 GLAFSHALNVLVSSGADSQLCVWSSDGW 926 (1106)
Q Consensus 899 ~l~~s~d~~~l~s~s~Dg~i~vwd~~~~ 926 (1106)
.-+...+..=++.....|.|.--.++..
T Consensus 306 ~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 306 VTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred EecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 7676656555666668887776666653
No 303
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.51 E-value=0.057 Score=65.04 Aligned_cols=207 Identities=11% Similarity=0.008 Sum_probs=116.5
Q ss_pred CcCeEEEEEccCCCEE-EEEeCCCeEEEEEccCCcee-eeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCC
Q 001295 412 GVSVNRVIWSPDGSLF-GVAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 489 (1106)
Q Consensus 412 ~~~V~~l~~spdg~~l-as~~~d~~v~iwd~~~~~~~-~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~ 489 (1106)
...+..|+|.+.+..| ++-...+.|+.+++...... .....+.........|++.+.++. ++++-...+.|.+.++.
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTK 501 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeCC
Confidence 4467899999955544 45456688999998753210 011123334456788999988875 56666778899999977
Q ss_pred CCceeEEEeccCCCeEEEeccccCCceEEEEEecC-CeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccc
Q 001295 490 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 568 (1106)
Q Consensus 490 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~ 568 (1106)
.......+.........|++.+.. +.++++-... +.|...+++.......+.........|++.+.+.
T Consensus 502 G~~~~~l~~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~---------- 570 (791)
T 3m0c_C 502 GVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG---------- 570 (791)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTT----------
T ss_pred CCeEEEEEeCCCCCcceEEEecCC-CCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCC----------
Confidence 544333333444567888876543 3444554333 6787777764333322222233445555554433
Q ss_pred eeEEEEcCCCCEEEEE-ECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 569 LGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 569 i~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
.|+.+ ...+.|...++........+...........|++.. +.++++-...+.|...+..++
T Consensus 571 -----------~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 571 -----------RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp -----------EEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred -----------eEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCC
Confidence 45444 345788888886544444443322222334555532 234444445677777776666
No 304
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.48 E-value=0.17 Score=54.34 Aligned_cols=248 Identities=8% Similarity=0.078 Sum_probs=156.6
Q ss_pred EEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCCC
Q 001295 355 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 434 (1106)
Q Consensus 355 ~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 434 (1106)
+.-.+|..+ ++|.-. ..++.|+|+++.+++....+ ...|..=.|-.+ +.|+..+ +.
T Consensus 70 sAIMnP~~~-iiALra-g~~lQiFnle~K~klks~~~--------------------~e~VvfWkWis~-~~l~lVT-~t 125 (494)
T 1bpo_A 70 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISL-NTVALVT-DN 125 (494)
T ss_dssp EEEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEEEET-TEEEEEC-SS
T ss_pred eeeeCCCCc-EEEEec-CCeEEEEchHHhhhhcceec--------------------CCCceEEEecCC-CeEEEEc-CC
Confidence 455788877 566654 68999999999888765322 225666666544 4565554 46
Q ss_pred eEEEEEccCCceeeeeeeecccc----CCeeEEEEcCCCCceEEEEec------CCCcEEEEeCCCCceeEEEeccCCCe
Q 001295 435 IVQIYSYHGGDEVRQHLEIDAHV----GGVNDIAFSHPNKQLCVITCG------DDKTIKVWDATNGAKQYIFEGHEAPV 504 (1106)
Q Consensus 435 ~v~iwd~~~~~~~~~~~~l~~h~----~~V~~~~~s~d~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~h~~~v 504 (1106)
.|.-|++.+...... .+..|. ..|..-..+++.++ ++++|= -.|.+.+|..+.+ .-+.+.||.+.-
T Consensus 126 aVyHWsi~~~s~P~k--vFdR~~~L~~~QIInY~~d~~~kW-~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F 201 (494)
T 1bpo_A 126 AVYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASF 201 (494)
T ss_dssp EEEEEESSSSCCCEE--EEECCGGGTTCEEEEEEECTTSSE-EEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEE
T ss_pred eeEEecccCCCCchh--heecchhcccceEEEEEECCCCCe-EEEEeecccCCcccceEEEeecccc-ccchheeeeeee
Confidence 699999976433222 344432 35777778899996 333332 3477899996554 467788887776
Q ss_pred EEEeccccCCc-eEEEEEecC---CeEEEEeCCCC-CceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCC
Q 001295 505 YSVCPHHKENI-QFIFSTALD---GKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 579 (1106)
Q Consensus 505 ~~~~~~~~~~~-~~l~s~~~d---g~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~ 579 (1106)
..+.+...... .++..+... +.+++-++... ... .........+.|.|+.. ..--..+.+++.-.
T Consensus 202 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~---~~f~kk~vdv~fppe~~-------~DFPvamqvs~kyg 271 (494)
T 1bpo_A 202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN---QPFPKKAVDVFFPPEAQ-------NDFPVAMQISEKHD 271 (494)
T ss_dssp EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTC---CCCCCEEEECCCCTTST-------TCCEEEEEEETTTT
T ss_pred EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCC---CCccceeeeeeCCcccc-------cCceeEEEecccCC
Confidence 66654332222 234444332 78888888643 111 11122344455555433 12334566777777
Q ss_pred EEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295 580 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642 (1106)
Q Consensus 580 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 642 (1106)
.+.....-|.|++||+.++.++..-+.... .|...+.+....-++.....|.|.-..+...
T Consensus 272 viyviTK~G~i~lyDleTgt~i~~nrIs~~--~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 272 VVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred EEEEEecCceEEEEecccceeeeeecccCC--ceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 888899999999999999999987765433 4555555555555666668888877777665
No 305
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.45 E-value=0.18 Score=54.12 Aligned_cols=234 Identities=9% Similarity=0.097 Sum_probs=140.2
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccc
Q 001295 574 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 653 (1106)
Q Consensus 574 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 653 (1106)
.+|..+.++.-. ..++.++|+++.+.+..+.... .|.--.|-.+ +.|+..+. ..|+-|++.....+.+.+..|.
T Consensus 73 MnP~~~iiALra-g~~lQiFnle~K~klks~~~~e---~VvfWkWis~-~~l~lVT~-taVyHWsi~~~s~P~kvFdR~~ 146 (494)
T 1bpo_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISL-NTVALVTD-NAVYHWSMEGESQPVKMFDRHS 146 (494)
T ss_dssp ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS---CCCEEEEEET-TEEEEECS-SEEEEEESSSSCCCEEEEECCG
T ss_pred eCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC---CceEEEecCC-CeEEEEcC-CeeEEecccCCCCchhheecch
Confidence 444444444433 7899999999999988887654 3666666544 34544443 5899999865433333333222
Q ss_pred cccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccce
Q 001295 654 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR 733 (1106)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~ 733 (1106)
..
T Consensus 147 ~L------------------------------------------------------------------------------ 148 (494)
T 1bpo_A 147 SL------------------------------------------------------------------------------ 148 (494)
T ss_dssp GG------------------------------------------------------------------------------
T ss_pred hc------------------------------------------------------------------------------
Confidence 11
Q ss_pred ecccCccccccceEEEEEcCCCceEEEeec-------CceEEEeeccccccCCCCccccccCccccCCCCCCccccccCC
Q 001295 734 SLRLPENLRATKISRLIFTNSGNAILALAS-------NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 806 (1106)
Q Consensus 734 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 806 (1106)
....|.....+++.++++..|- .|.+.+|..+.. .-.. +.|
T Consensus 149 --------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~----------------------~sQ~--ieG 196 (494)
T 1bpo_A 149 --------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK----------------------VSQP--IEG 196 (494)
T ss_dssp --------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC----------------------CEEE--ECC
T ss_pred --------ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc----------------------ccch--hee
Confidence 2356667777777777665442 256666665432 1111 111
Q ss_pred CCCCCCeeEEEEecC---CCEEEEEe----CCeEEEEEcCCC---cee-----ee-e-c--CCCCCeeEEEEecCCCceE
Q 001295 807 SNPEEAVPCFALSKN---DSYVMSAS----GGKISLFNMMTF---KTM-----AT-F-M--PPPPAATFLAFHPQDNNII 867 (1106)
Q Consensus 807 ~~~~~~v~~l~~s~~---~~~l~~~s----dg~i~vwd~~~~---~~~-----~~-~-~--~~~~~v~~l~~s~~d~~~l 867 (1106)
|...-..+.+..+ .+.++.+. .++++|.++... ... .. + . ...+-..++.+|+ .-.++
T Consensus 197 --haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygvi 273 (494)
T 1bpo_A 197 --HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVV 273 (494)
T ss_dssp --SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEE
T ss_pred --eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEE
Confidence 2211111111111 11333333 378999998542 110 11 1 1 1233457888888 66788
Q ss_pred EEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCc
Q 001295 868 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 926 (1106)
Q Consensus 868 a~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~ 926 (1106)
..-+.-|.|++||+.++.++..-+-..+.|..-+......=++.....|.|.--.++..
T Consensus 274 yviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 274 FLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred EEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 88899999999999999999887777778877777666666666778887776666653
No 306
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.38 E-value=0.021 Score=59.64 Aligned_cols=202 Identities=11% Similarity=0.062 Sum_probs=123.2
Q ss_pred CCeeEEEEecCCCEEEEEe--CCeEEEEEcCCCceeee-ecC----CC--CCeeEEEE---ecCCCceEEEeeC------
Q 001295 811 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMAT-FMP----PP--PAATFLAF---HPQDNNIIAIGMD------ 872 (1106)
Q Consensus 811 ~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~-~~~----~~--~~v~~l~~---s~~d~~~la~g~~------ 872 (1106)
--..++.|.+....+..++ .++|..|+...+..... +.+ .. ..+..+.+ .| +++++++...
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNF 91 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccccc
Confidence 3345789988666666666 79999999986544333 222 11 13578999 68 6888876442
Q ss_pred -------CCcEEEEEee---cceEEEEec--Ccc-----------cCeeEEEEecCCCEEEEEcCC-CcEEEEeCCCccc
Q 001295 873 -------DSSIQIYNVR---VDEVKSKLK--GHS-----------KRITGLAFSHALNVLVSSGAD-SQLCVWSSDGWEK 928 (1106)
Q Consensus 873 -------dg~v~iwd~~---~~~~~~~l~--~h~-----------~~V~~l~~s~d~~~l~s~s~D-g~i~vwd~~~~~~ 928 (1106)
+..|..||+. +++.+.... +.. .....++..++|+..++++.- +.|...+.+....
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~ 171 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV 171 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE
Confidence 6789999999 777654433 221 247899999999999988877 7766666554211
Q ss_pred ccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceEeeecccC--C---CCCCeeEE-EECCCCCE
Q 001295 929 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPR--E---SSAPITHA-TFSCDSQL 1001 (1106)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~~~~~~~~--~---h~~~v~~l-~~s~d~~~ 1001 (1106)
....+..... ........++++|||+.|++. ..+.+..+|+.+.... .+... + .-.....| ..-.+|+.
T Consensus 172 -~~~~~~~~~~--~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G~v 247 (334)
T 2p9w_A 172 -STFAWESGNG--GQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGNES 247 (334)
T ss_dssp -EEEEECCCCS--SSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETTEE
T ss_pred -eeeeecCCCc--ccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCCEE
Confidence 1111111111 111356799999999988884 5888999998843220 11111 1 11223343 33347777
Q ss_pred -EEEEEcCCeEEEEEcC
Q 001295 1002 -VYACFLDATVCVFSAA 1017 (1106)
Q Consensus 1002 -l~t~s~Dg~i~vwd~~ 1017 (1106)
|++.+..+.+.+.+-+
T Consensus 248 llV~~~~~~~~~l~S~D 264 (334)
T 2p9w_A 248 VLVGARAPYAISFRSWD 264 (334)
T ss_dssp EEEEEETTEEEEEECSS
T ss_pred EEEEcCCCCEEEEECCC
Confidence 4555556665555543
No 307
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.35 E-value=0.044 Score=59.46 Aligned_cols=231 Identities=13% Similarity=0.115 Sum_probs=120.0
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEcCCCce--eeeec---CCCCCeeEEEEecC---CCceEEEeeCC-----CcEEE
Q 001295 812 AVPCFALSKNDSYVMSASGGKISLFNMMTFKT--MATFM---PPPPAATFLAFHPQ---DNNIIAIGMDD-----SSIQI 878 (1106)
Q Consensus 812 ~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~--~~~~~---~~~~~v~~l~~s~~---d~~~la~g~~d-----g~v~i 878 (1106)
....++|.|+|+++++-.+|.|++++ +++. +..+. ........|+|+|+ ++.+.++-..+ +.|..
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 46799999999977665589999998 3332 11111 12346889999993 24444444332 67888
Q ss_pred EEeecc-----e-EEEEec---CcccCeeEEEEecCCCEEEEEcCC-------------CcEEEEeCCCcccccc-----
Q 001295 879 YNVRVD-----E-VKSKLK---GHSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWEKQKN----- 931 (1106)
Q Consensus 879 wd~~~~-----~-~~~~l~---~h~~~V~~l~~s~d~~~l~s~s~D-------------g~i~vwd~~~~~~~~~----- 931 (1106)
|+...+ + ++..+. +.......|+|.|||.+.++.+.. |.|.-++.+. .....
T Consensus 110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf~~ 188 (352)
T 2ism_A 110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPFLG 188 (352)
T ss_dssp EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTTTT
T ss_pred EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCcccC
Confidence 887643 1 122233 111123689999999877765432 4455555442 10000
Q ss_pred ----eeecccCCCCCCCCCCceEEEcC-CCcEEEE-EeCCeE------EEEecCCce------------------Eeeec
Q 001295 932 ----RFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLV-VHETQL------AIFETTKLE------------------CVKQW 981 (1106)
Q Consensus 932 ----~~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~-~~d~~v------~i~d~~~~~------------------~~~~~ 981 (1106)
.......++ .....++|+| +|.++++ ...+.+ .+.-+..+. .+..+
T Consensus 189 ~~~~~~~i~a~G~----rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~ 264 (352)
T 2ism_A 189 RRGARPEVYSLGH----RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW 264 (352)
T ss_dssp CTTSCTTEEEECC----SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred CCCCCccEEEEcC----CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec
Confidence 000001111 1357789999 6776666 222221 122222222 11111
Q ss_pred ccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEE-eeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEe
Q 001295 982 VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC-RINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1059 (1106)
Q Consensus 982 ~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~ 1059 (1106)
.+......++| .+|.++++....+.|...+++...... ......++. . .-.+..+++.| ||.++++..
T Consensus 265 ---~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~-~----~~rp~~v~~~p-dG~lyv~~~ 333 (352)
T 2ism_A 265 ---PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS-G----FGRLREVQVGP-DGALYVTTS 333 (352)
T ss_dssp ---TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE-S----SCCEEEEEECT-TSCEEEEEC
T ss_pred ---CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc-c----CCCeeEEEECC-CCcEEEEEe
Confidence 12234567777 467666666566777777765433100 000001111 1 12355888988 677766653
No 308
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.35 E-value=0.11 Score=56.24 Aligned_cols=231 Identities=12% Similarity=0.097 Sum_probs=125.9
Q ss_pred CCeeEEEEecCCCEEEEEeCCeEEEEEcCCCc-eeeeec---CCCCCeeEEEEecC---CCceEEEeeC---C----CcE
Q 001295 811 EAVPCFALSKNDSYVMSASGGKISLFNMMTFK-TMATFM---PPPPAATFLAFHPQ---DNNIIAIGMD---D----SSI 876 (1106)
Q Consensus 811 ~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~-~~~~~~---~~~~~v~~l~~s~~---d~~~la~g~~---d----g~v 876 (1106)
.....++|.|+|+++++-.+|.|++++. +++ .+..+. ........|+|+|+ ++.+.++-+. + ..|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 3468899999998777666899999973 443 222221 12345889999993 3555444332 3 567
Q ss_pred EEEEeecc-------eEE-EEecC-cccCeeEEEEecCCCEEEEEcCC-------------CcEEEEeCCCcccccc---
Q 001295 877 QIYNVRVD-------EVK-SKLKG-HSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWEKQKN--- 931 (1106)
Q Consensus 877 ~iwd~~~~-------~~~-~~l~~-h~~~V~~l~~s~d~~~l~s~s~D-------------g~i~vwd~~~~~~~~~--- 931 (1106)
..|+.... +.+ ..+.. .......|+|.|||.++++.+.. |.|.-.+.+.. ....
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~p~~npf 186 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR-PPADNPF 186 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC-CCTTSSS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC-CCCCCCC
Confidence 77776543 111 22221 11124679999999877775432 34444444321 0000
Q ss_pred -eeecccCCCCCCCCCCceEEEcC-CCcEEEE--EeCC--eEEEEecCCce------------------EeeecccCCCC
Q 001295 932 -RFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLV--VHET--QLAIFETTKLE------------------CVKQWVPRESS 987 (1106)
Q Consensus 932 -~~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~--~~d~--~v~i~d~~~~~------------------~~~~~~~~~h~ 987 (1106)
.......++ .....++|+| +|.++++ +.+. .|.+.. .+. .+..+. ...
T Consensus 187 ~~~~i~a~G~----rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~--~~~ 258 (354)
T 3a9g_A 187 PNSPIWSYGH----RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTG--SET 258 (354)
T ss_dssp TTCCEEEECC----SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECT--TCC
T ss_pred CCCcEEEEcc----CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecC--CCC
Confidence 000011122 2457899999 6776666 2222 344332 221 111110 113
Q ss_pred CCeeEEEEC-------CCCCEEEEEEcCCeEEEEEcCCc-eeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEe
Q 001295 988 APITHATFS-------CDSQLVYACFLDATVCVFSAANL-KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1059 (1106)
Q Consensus 988 ~~v~~l~~s-------~d~~~l~t~s~Dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~ 1059 (1106)
.....++|. .+|.++++....+.|...+++.. +..... .++. + ..-.+..+++.| ||.++++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~---~~~~-~---~~~rp~~v~~~p-DG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIS---TFFK-N---VFGRLRDVVIDD-DGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEE---EECT-T---TSCCEEEEEECT-TSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCccccee---eecc-C---CCCCeeEEEECC-CCcEEEEEe
Confidence 467788883 57777777666778888888753 322111 1111 1 113456899999 687766654
No 309
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.29 E-value=0.0016 Score=77.98 Aligned_cols=217 Identities=7% Similarity=-0.088 Sum_probs=120.6
Q ss_pred eeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCc---ceeEEeeeeeeccCcCCccccccccCCCCcCeEEEE
Q 001295 343 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR---ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 419 (1106)
Q Consensus 343 ~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 419 (1106)
...++.....+.+++|++.+..|+.+-...+.|..+++.+. ..... ++...-.....|+
T Consensus 398 ~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~------------------~i~~~~~~P~gla 459 (699)
T 1n7d_A 398 YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT------------------VISRDIQAPDGLA 459 (699)
T ss_dssp EECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCC------------------BCCSCC--CCCEE
T ss_pred ceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEE------------------EEeCCCCCcceEE
Confidence 33334444567889999987766666555688999988751 11000 1111112345688
Q ss_pred EccCC-CEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEe-cCCCcEEEEeCCCCceeEEE
Q 001295 420 WSPDG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIF 497 (1106)
Q Consensus 420 ~spdg-~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~ 497 (1106)
+.+.+ +++++-...+.|.++++.+..... .+.........|++.|.+..+ +++- +..+.|.+.++... ....+
T Consensus 460 vD~~~g~LY~tD~~~~~I~v~d~dg~~~~~---l~~~~~~~P~giavDp~~g~l-y~td~~~~~~I~~~~~dG~-~~~~l 534 (699)
T 1n7d_A 460 VDWIHSNIYWTDSVLGTVSVADTKGVKRKT---LFREQGSKPRAIVVDPVHGFM-YWTDWGTPAKIKKGGLNGV-DIYSL 534 (699)
T ss_dssp CCCSSSBCEECCTTTSCEEEEBSSSCCEEE---ECCCSSCCCCCEECCSSSSCC-EECCCSSSCCEEBCCSSSC-CCCEE
T ss_pred EEeeCCcEEEEeccCCeEEEEecCCCceEE---EEeCCCCCcceEEEccCCCcE-EEcccCCCCeEEEEeCCCC-CeeEE
Confidence 88644 444444556789999987654222 122223456789999977653 3333 23377888876533 22222
Q ss_pred -eccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCC--CCeeEEEEEecCCCeEEEeeeccceeEEEE
Q 001295 498 -EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP--GRWCTTMAYSADGTRTYQGFRKRSLGVVQF 574 (1106)
Q Consensus 498 -~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~ 574 (1106)
.........|+|++.. +.++++-+..+.|..+++........+... ......|++
T Consensus 535 ~~~~l~~PnGlavd~~~-~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glav--------------------- 592 (699)
T 1n7d_A 535 VTENIQWPNGITLDLLS-GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--------------------- 592 (699)
T ss_dssp SCSSCSSCCCEEECTTT-CCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEE---------------------
T ss_pred EeCCCCCccEEEEeccC-CEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEE---------------------
Confidence 2223445677776543 356666667788999988643222221110 011112222
Q ss_pred cCCCCEEEEEECCCeEEEEECCCcceeEEEc
Q 001295 575 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSID 605 (1106)
Q Consensus 575 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 605 (1106)
..+ ..+++....+.|..++..+++.+..+.
T Consensus 593 d~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 593 FED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp ETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred ECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 111 234444566889999988888777664
No 310
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.23 E-value=0.064 Score=58.18 Aligned_cols=240 Identities=13% Similarity=0.121 Sum_probs=127.2
Q ss_pred CeeEEEEecCCC-EEEEEeCCeEEEEEcCCCcee---eee----cCCCCCeeEEEEecC---CCceEEEeeC-------C
Q 001295 812 AVPCFALSKNDS-YVMSASGGKISLFNMMTFKTM---ATF----MPPPPAATFLAFHPQ---DNNIIAIGMD-------D 873 (1106)
Q Consensus 812 ~v~~l~~s~~~~-~l~~~sdg~i~vwd~~~~~~~---~~~----~~~~~~v~~l~~s~~---d~~~la~g~~-------d 873 (1106)
....++|.|+|+ ++++-..|.|++++... ... ..+ .........++|+|+ ++.+.++-+. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 467899999999 66655589999998542 221 111 112345689999993 3544444332 2
Q ss_pred CcEEEEEeecc-------eEE-EEec-----CcccCeeEEEEecCCCEEEEEcCC-------------CcEEEEeCCCcc
Q 001295 874 SSIQIYNVRVD-------EVK-SKLK-----GHSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWE 927 (1106)
Q Consensus 874 g~v~iwd~~~~-------~~~-~~l~-----~h~~~V~~l~~s~d~~~l~s~s~D-------------g~i~vwd~~~~~ 927 (1106)
..|..|++..+ +.+ ..+. .|. -..|+|.|||.+.++.+.. |.|.-.+.+..-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 35666666432 111 1121 132 3579999999776665442 345555554310
Q ss_pred cccc--------eeecccCCCCCCCCCCceEEEcC-CCcEEEEE--eCCeEEEEecCCceE-------------------
Q 001295 928 KQKN--------RFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLVV--HETQLAIFETTKLEC------------------- 977 (1106)
Q Consensus 928 ~~~~--------~~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~--~d~~v~i~d~~~~~~------------------- 977 (1106)
.... .......++ .....++|.| +|+++++- .++.=.|.-+..+..
T Consensus 176 p~~npf~~~~~~~~~i~a~G~----rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~ 251 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSYGI----RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPE 251 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEECC----SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTT
T ss_pred CCCCCCcCCCCCCccEEEEcC----cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCc
Confidence 0000 000001121 2457899999 67766662 222222222222111
Q ss_pred ------------eeecccCCCCCCeeEEEECC-------CCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCC
Q 001295 978 ------------VKQWVPRESSAPITHATFSC-------DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSS 1038 (1106)
Q Consensus 978 ------------~~~~~~~~h~~~v~~l~~s~-------d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1106)
+..| .+...+..++|.. +|.++++....+.|...+++.++...... ++.. .
T Consensus 252 ~~~~~~~~~~~P~~~~---~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~~----~ 321 (353)
T 2g8s_A 252 AKGEIVAGTEQPVFYW---KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILTD----R 321 (353)
T ss_dssp CCBSSCTTSCCCSEEE---SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESGG----G
T ss_pred ccCCCCCCccCCeEEe---CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---cccC----C
Confidence 0001 1233567788753 57777777677888888887665443221 1111 0
Q ss_pred CccceEEEEeCCCCCEEEEEeCCCcEEEEeec
Q 001295 1039 NVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1070 (1106)
Q Consensus 1039 ~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~ 1070 (1106)
.-.+..+++.| ||.++++.. ++.=+||++.
T Consensus 322 ~~rp~~v~~~p-dG~lyv~td-~~~g~I~ri~ 351 (353)
T 2g8s_A 322 GQRIRDVRTGP-DGYLYVLTD-ESSGELLKVS 351 (353)
T ss_dssp CCCEEEEEECT-TSCEEEEEC-STTEEEEEEE
T ss_pred CCceeEEEECC-CCcEEEEEe-CCCCEEEEEe
Confidence 12466899999 688666543 2333566664
No 311
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.23 E-value=0.17 Score=54.75 Aligned_cols=109 Identities=16% Similarity=0.124 Sum_probs=63.6
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC---CC
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GS 425 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~ 425 (1106)
.-...+.++|.|+|+ |+++ ..+|.|.+++ +++..... ++. +..........|+|+|| +.
T Consensus 29 ~l~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~~~~~-----~~~---------v~~~g~~~p~gia~~pdf~~~g 90 (352)
T 2ism_A 29 GLEVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRLSTYA-----ELS---------VYHRGESGLLGLALHPRFPQEP 90 (352)
T ss_dssp CCSCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEEEEEE-----ECC---------CCCSTTCSEEEEEECTTTTTSC
T ss_pred CCCCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCccEee-----cce---------EeecCCCCceeEEECCCCCCCC
Confidence 445789999999998 4554 5569999998 34321110 100 11222456889999998 55
Q ss_pred EEEEEeC-C-----CeEEEEEccCCce--eeee-eeec---cccCCeeEEEEcCCCCceEEEEe
Q 001295 426 LFGVAYS-R-----HIVQIYSYHGGDE--VRQH-LEID---AHVGGVNDIAFSHPNKQLCVITC 477 (1106)
Q Consensus 426 ~las~~~-d-----~~v~iwd~~~~~~--~~~~-~~l~---~h~~~V~~~~~s~d~~~~~l~s~ 477 (1106)
+|.++.. . +.|..|+...+.. .+.+ ..+. +.......++|.|||. +.++.
T Consensus 91 ~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~ 152 (352)
T 2ism_A 91 YVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM--LYVTT 152 (352)
T ss_dssp EEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC--EEEEC
T ss_pred EEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC--EEEEE
Confidence 5544432 2 6788888775421 1111 1122 1112346899999996 45553
No 312
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.23 E-value=0.29 Score=52.85 Aligned_cols=110 Identities=18% Similarity=0.120 Sum_probs=63.2
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC---CC
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GS 425 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~ 425 (1106)
.-...+.++|.|+|+ |+++ ..+|.|.++| .+++ .....+. +..........|+|+|+ +.
T Consensus 27 ~l~~P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~-~~~~~~~--------------v~~~g~~g~~gia~~pdf~~~g 88 (354)
T 3a9g_A 27 DLEVPWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGK-KLVASFD--------------VANVGEAGLLGLALHPEFPKKS 88 (354)
T ss_dssp SCSCEEEEEEEETTE-EEEE-ETTTEEEEEC-SSCE-EEEEECC--------------CCCSTTCSEEEEEECTTTTTSC
T ss_pred CCCCCeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCc-eEeeccc--------------eeecCCCceeeEEeCCCCCcCC
Confidence 456789999999998 4554 5569999997 3443 1100100 11222346889999997 45
Q ss_pred EEEEEeC----C----CeEEEEEccCC--ce--eeee-eeec-cccCCeeEEEEcCCCCceEEEEec
Q 001295 426 LFGVAYS----R----HIVQIYSYHGG--DE--VRQH-LEID-AHVGGVNDIAFSHPNKQLCVITCG 478 (1106)
Q Consensus 426 ~las~~~----d----~~v~iwd~~~~--~~--~~~~-~~l~-~h~~~V~~~~~s~d~~~~~l~s~~ 478 (1106)
+|.++.. + ..|..|+...+ .. .+.+ ..+. +.......|+|.|||. ++++.+
T Consensus 89 ~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G 153 (354)
T 3a9g_A 89 WVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTG 153 (354)
T ss_dssp EEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECC
T ss_pred EEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEEC
Confidence 5544432 3 56778887654 11 1111 1121 1112347799999997 555543
No 313
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.04 E-value=0.17 Score=53.71 Aligned_cols=228 Identities=9% Similarity=0.032 Sum_probs=119.1
Q ss_pred CEEEEEe---CCeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCceEEEeeCC----CcEEEEEeecceE--EEEec
Q 001295 823 SYVMSAS---GGKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDD----SSIQIYNVRVDEV--KSKLK 891 (1106)
Q Consensus 823 ~~l~~~s---dg~i~vwd~~~~~~~~~--~~~~~~~v~~l~~s~~d~~~la~g~~d----g~v~iwd~~~~~~--~~~l~ 891 (1106)
.+++.|+ ...+.+||..+.+.... +........++. - ++++++.|+.+ ..+.+||..+.+- +..+.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--W-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--E-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--E-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 3455554 25799999887654322 222122222222 3 67788888765 5788899887543 22222
Q ss_pred CcccCeeEEEEecCCCEEEEEcCC------CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-e-
Q 001295 892 GHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H- 963 (1106)
Q Consensus 892 ~h~~~V~~l~~s~d~~~l~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~- 963 (1106)
.....-..+ .-++++++.|+.+ ..+.+||..+.+= ..+..... + ..-.+++. -+++.++.+ .
T Consensus 90 ~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W---~~~~~~p~--~--r~~~~~~~-~~~~iyv~GG~~ 159 (306)
T 3ii7_A 90 TPRDSLAAC--AAEGKIYTSGGSEVGNSALYLFECYDTRTESW---HTKPSMLT--Q--RCSHGMVE-ANGLIYVCGGSL 159 (306)
T ss_dssp SCCBSCEEE--EETTEEEEECCBBTTBSCCCCEEEEETTTTEE---EEECCCSS--C--CBSCEEEE-ETTEEEEECCEE
T ss_pred ccccceeEE--EECCEEEEECCCCCCCcEeeeEEEEeCCCCce---EeCCCCcC--C--cceeEEEE-ECCEEEEECCCC
Confidence 111111222 2367778888765 4588899887431 11211111 0 11122222 366666653 2
Q ss_pred --------CCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCceeEEeeCCCcc
Q 001295 964 --------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAY 1030 (1106)
Q Consensus 964 --------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D-----g~i~vwd~~~~~~~~~~~~~~~ 1030 (1106)
-..+.+||..+.+-...-........-..+.+ ++++++.|+.+ ..+.+||..+.+-...-.
T Consensus 160 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~---- 233 (306)
T 3ii7_A 160 GNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSP---- 233 (306)
T ss_dssp SCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCC----
T ss_pred CCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCC----
Confidence 34588999988754333211111111122222 67777777654 358999998876543211
Q ss_pred cCCCCCCCCccceEEEEeCCCCCEEEEEeCC-----CcEEEEeecCCCCccCC
Q 001295 1031 LPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESEGKWGV 1078 (1106)
Q Consensus 1031 ~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~D-----g~v~vW~~~~~~~~~~~ 1078 (1106)
++... ....++.. ++.+++.|+.+ ..+.++|+.+.+ |..
T Consensus 234 ~p~~r-----~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~--W~~ 277 (306)
T 3ii7_A 234 MPWKG-----VTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK--WVA 277 (306)
T ss_dssp CSCCB-----SCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE--EEE
T ss_pred CCCCc-----cceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe--EEe
Confidence 22221 11133333 46788888865 457777877755 544
No 314
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.02 E-value=0.02 Score=59.80 Aligned_cols=168 Identities=11% Similarity=0.061 Sum_probs=107.2
Q ss_pred cccCeeEEEEecC-CCEEEEEcCCCcEEEEeCCCcccccceeecccCCCC---CCCCCCceEEE---cCCCcEEEEEe--
Q 001295 893 HSKRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT---PTAQSDTRVQF---HQDQIHFLVVH-- 963 (1106)
Q Consensus 893 h~~~V~~l~~s~d-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~---s~dg~~l~~~~-- 963 (1106)
...---++.|.+. +.++++.-..++|..|+...+.... + ...+.. .....+..+.+ .|+++++++..
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~---~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~ 86 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFN---V-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA 86 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEE---E-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEE---E-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence 3334457889874 5555555589999999987543211 1 122210 11123478999 68988888644
Q ss_pred ------------CCeEEEEecC---CceEeeecccCCC-----------CCCeeEEEECCCCCEEEEEEcC-CeEEEEEc
Q 001295 964 ------------ETQLAIFETT---KLECVKQWVPRES-----------SAPITHATFSCDSQLVYACFLD-ATVCVFSA 1016 (1106)
Q Consensus 964 ------------d~~v~i~d~~---~~~~~~~~~~~~h-----------~~~v~~l~~s~d~~~l~t~s~D-g~i~vwd~ 1016 (1106)
+..|..||+. +++.+........ ......++..++|+..++++.- +.|...+.
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA 166 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence 5789999999 7776544332111 1247899999999999989888 88777776
Q ss_pred CCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeec
Q 001295 1017 ANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1070 (1106)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~ 1070 (1106)
+... +..+... .+......... .|+++| |+++|++...+|.|..+|+.
T Consensus 167 dG~~-~~~~~~~--~~~~~~~~G~n--GIv~~p-dg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 167 DGKT-VSTFAWE--SGNGGQRPGYS--GITFDP-HSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp TSCC-EEEEEEC--CCCSSSCCSCS--EEEEET-TTTEEEEESSSSSEEEEECS
T ss_pred CCCE-Eeeeeec--CCCcccccCcc--eEEEeC-CCCEEEEEcCCCeEEEEcCC
Confidence 5442 2222100 11111111133 899999 68888888779999999987
No 315
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.96 E-value=0.099 Score=55.30 Aligned_cols=232 Identities=11% Similarity=0.096 Sum_probs=118.7
Q ss_pred CCCEEEEEe-C------CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCC-----CcEEEEEeecce---
Q 001295 821 NDSYVMSAS-G------GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRVDE--- 885 (1106)
Q Consensus 821 ~~~~l~~~s-d------g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~d-----g~v~iwd~~~~~--- 885 (1106)
++.+++.|+ . ..+.+||..+.+....-..........+... ++++++.|+.+ ..+.+||..+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~ 92 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL-HDRIYVIGGYDGRSRLSSVECLDYTADEDGV 92 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE-CCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence 445555554 2 3588999887653322111111111122223 67788888865 368999987654
Q ss_pred --EEEEecCcccCeeEEEEecCCCEEEEEcCCC-----cEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcE
Q 001295 886 --VKSKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 958 (1106)
Q Consensus 886 --~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~ 958 (1106)
.+..+......-.++ ..++++++.|+.++ .+.+||..+.+= ..+...... ..-..++ .-+++.
T Consensus 93 W~~~~~~p~~r~~~~~~--~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W---~~~~~~p~~----r~~~~~~-~~~~~i 162 (301)
T 2vpj_A 93 WYSVAPMNVRRGLAGAT--TLGDMIYVSGGFDGSRRHTSMERYDPNIDQW---SMLGDMQTA----REGAGLV-VASGVI 162 (301)
T ss_dssp CEEECCCSSCCBSCEEE--EETTEEEEECCBCSSCBCCEEEEEETTTTEE---EEEEECSSC----CBSCEEE-EETTEE
T ss_pred eEECCCCCCCccceeEE--EECCEEEEEcccCCCcccceEEEEcCCCCeE---EECCCCCCC----cccceEE-EECCEE
Confidence 332222211111222 23677777777543 578888876432 112111110 1112222 236666
Q ss_pred EEEE-eC-----CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCceeEEeeCC
Q 001295 959 FLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINP 1027 (1106)
Q Consensus 959 l~~~-~d-----~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D-----g~i~vwd~~~~~~~~~~~~ 1027 (1106)
++.+ .+ ..+.+||..+.+-...-........-..+.+ ++++++.|+.+ ..|.+||+.+.+-...-.
T Consensus 163 yv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~- 239 (301)
T 2vpj_A 163 YCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS- 239 (301)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECC-
T ss_pred EEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCC-
Confidence 6663 32 4689999987765433211111111122222 67777777764 468999998876553321
Q ss_pred CcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCC-----cEEEEeecCCCCccCC
Q 001295 1028 SAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG-----GVHVFEPLESEGKWGV 1078 (1106)
Q Consensus 1028 ~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg-----~v~vW~~~~~~~~~~~ 1078 (1106)
++.... -. .++.. ++++++.|+.++ .+.++|+.+.+ |..
T Consensus 240 ---~p~~r~---~~--~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 283 (301)
T 2vpj_A 240 ---MTTPRC---YV--GATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS--WEV 283 (301)
T ss_dssp ---CSSCCB---SC--EEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE--EEE
T ss_pred ---CCCccc---ce--eEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe--EEE
Confidence 222210 11 23333 467888887663 46777776644 543
No 316
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.91 E-value=0.17 Score=53.51 Aligned_cols=229 Identities=12% Similarity=0.112 Sum_probs=118.1
Q ss_pred CCEEEEEe-C----CeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCceEEEeeCCC-----cEEEEEeecceE--E
Q 001295 822 DSYVMSAS-G----GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDEV--K 887 (1106)
Q Consensus 822 ~~~l~~~s-d----g~i~vwd~~~~~~~~~--~~~~~~~v~~l~~s~~d~~~la~g~~dg-----~v~iwd~~~~~~--~ 887 (1106)
+.+++.|+ + ..+..||..+.+.... +......- +++. - ++++++.|+.++ .+.+||..+.+- +
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRA-GMVY-M-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-E-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccc-eEEE-E-CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 44555554 2 4588899887553322 22111111 2222 2 677888887653 588899876542 2
Q ss_pred EEecCcccCeeEEEEecCCCEEEEEcCCC-----cEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE
Q 001295 888 SKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 962 (1106)
Q Consensus 888 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 962 (1106)
..+......-.++. -++++++.|+.++ .+.+||+.+.+ ...+..... + ..-.+++. -+++.++.+
T Consensus 93 ~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~---W~~~~~~p~--~--r~~~~~~~-~~~~iyv~G 162 (302)
T 2xn4_A 93 ANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNE---WFHVAPMNT--R--RSSVGVGV-VGGLLYAVG 162 (302)
T ss_dssp CCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTE---EEEECCCSS--C--CBSCEEEE-ETTEEEEEC
T ss_pred CCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCe---EeecCCCCC--c--ccCceEEE-ECCEEEEEe
Confidence 22221111111222 3677788887653 47788877643 122211111 0 11122222 356666653
Q ss_pred -e-------CCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCceeEEeeCCCc
Q 001295 963 -H-------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSA 1029 (1106)
Q Consensus 963 -~-------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D-----g~i~vwd~~~~~~~~~~~~~~ 1029 (1106)
. -..+.+||..+.+-...-........-..+.+ ++++++.|+.+ ..+.+||..+.+-...-.
T Consensus 163 G~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~--- 237 (302)
T 2xn4_A 163 GYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD--- 237 (302)
T ss_dssp CEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC---
T ss_pred CCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC---
Confidence 2 24588999987754433111111111122222 67777777765 368999998876543321
Q ss_pred ccCCCCCCCCccceEEEEeCCCCCEEEEEeCCC-----cEEEEeecCCCCccCC
Q 001295 1030 YLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG-----GVHVFEPLESEGKWGV 1078 (1106)
Q Consensus 1030 ~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg-----~v~vW~~~~~~~~~~~ 1078 (1106)
++..... . .++.. ++.+++.|+.++ .+.++|+.+.+ |..
T Consensus 238 -~~~~r~~---~--~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 281 (302)
T 2xn4_A 238 -MNMCRRN---A--GVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK--WTV 281 (302)
T ss_dssp -CSSCCBS---C--EEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE--EEE
T ss_pred -CCCcccc---C--eEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe--EEE
Confidence 2221111 1 23333 467888888664 47888887755 654
No 317
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=96.91 E-value=0.00056 Score=54.52 Aligned_cols=36 Identities=31% Similarity=0.420 Sum_probs=32.6
Q ss_pred CcchhHHHHHHHHHHHhHhcHHHHHHHHHHhhCCCc
Q 001295 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFF 36 (1106)
Q Consensus 1 ~~~~~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~ 36 (1106)
|+--+.||..||+.||+|.||..||-+|++||++.-
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~ 36 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQ 36 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCc
Confidence 667789999999999999999999999999999864
No 318
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.81 E-value=0.068 Score=57.44 Aligned_cols=108 Identities=11% Similarity=0.076 Sum_probs=80.6
Q ss_pred EEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCC----CCCeeEEEEecCCCceEEEeeCCCcEEEEEeecce------
Q 001295 816 FALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE------ 885 (1106)
Q Consensus 816 l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~----~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~------ 885 (1106)
.....+|.-++.+.++.||.-++......+.+... -..|..+..+| +|.+||..+ +..|.|-.+..+.
T Consensus 26 ~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 26 IFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp EEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCH
T ss_pred EEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCccc
Confidence 45567888999999999999998854444444433 23688999999 999999886 5588998886321
Q ss_pred ------EEEEecC------cccCeeEEEEecC---CCEEEEEcCCCcEEEEeCCC
Q 001295 886 ------VKSKLKG------HSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDG 925 (1106)
Q Consensus 886 ------~~~~l~~------h~~~V~~l~~s~d---~~~l~s~s~Dg~i~vwd~~~ 925 (1106)
..+.+.- ...+|..+.|+|- +..|++-..|++|++||+..
T Consensus 104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 0112221 3567999999986 46899999999999999986
No 319
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.59 E-value=0.22 Score=52.60 Aligned_cols=188 Identities=8% Similarity=0.024 Sum_probs=99.0
Q ss_pred cCCCEEEEEe-C-----CeEEEEEcCCCc---eeee--ecCCCCCeeEEEEecCCCceEEEeeCCC-----cEEEEEeec
Q 001295 820 KNDSYVMSAS-G-----GKISLFNMMTFK---TMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRV 883 (1106)
Q Consensus 820 ~~~~~l~~~s-d-----g~i~vwd~~~~~---~~~~--~~~~~~~v~~l~~s~~d~~~la~g~~dg-----~v~iwd~~~ 883 (1106)
.++++++.|+ + ..+.+||..+.+ .... +........++. . ++++++.|+.++ .+.+||..+
T Consensus 61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT--L-GDMIYVSGGFDGSRRHTSMERYDPNI 137 (301)
T ss_dssp ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE--E-TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE--E-CCEEEEEcccCCCcccceEEEEcCCC
Confidence 3667777765 3 358999988765 3222 222222222222 2 677888887543 588899876
Q ss_pred ce--EEEEecCcccCeeEEEEecCCCEEEEEcCC-----CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCC
Q 001295 884 DE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 956 (1106)
Q Consensus 884 ~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg 956 (1106)
.+ .+..+...... ..+..-++++++.|+.+ ..+.+||+.+.+ ...+..... + ..-..++ .-++
T Consensus 138 ~~W~~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~---W~~~~~~p~--~--r~~~~~~-~~~~ 207 (301)
T 2vpj_A 138 DQWSMLGDMQTAREG--AGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGH---WTNVTPMAT--K--RSGAGVA-LLND 207 (301)
T ss_dssp TEEEEEEECSSCCBS--CEEEEETTEEEEECCBCSSCBCCCEEEEETTTTE---EEEECCCSS--C--CBSCEEE-EETT
T ss_pred CeEEECCCCCCCccc--ceEEEECCEEEEECCCCCCcccceEEEEeCCCCc---EEeCCCCCc--c--cccceEE-EECC
Confidence 54 33333211111 11222367788887765 358889987743 222211111 0 1112222 2356
Q ss_pred cEEEEE-e-----CCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCceeE
Q 001295 957 IHFLVV-H-----ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1022 (1106)
Q Consensus 957 ~~l~~~-~-----d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D-----g~i~vwd~~~~~~~ 1022 (1106)
+.++.+ . ...+.+||+.+.+-...-........-..+.+ ++++++.|+.+ ..|.+||..+.+-.
T Consensus 208 ~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 208 HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp EEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred EEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 666663 3 24699999988765433221111111122222 67777777765 35788888876543
No 320
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=96.52 E-value=0.0033 Score=57.98 Aligned_cols=82 Identities=15% Similarity=0.280 Sum_probs=66.6
Q ss_pred cccchhhhHHHHHHHHHHHhCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccchhhccCCC-------chHH
Q 001295 67 RYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-------TKSA 139 (1106)
Q Consensus 67 ~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~l~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~-------~~~~ 139 (1106)
++.+ ++|+|+.|.||||+.+|+.++|..+|++.-..++..+.+.+++|+.+....++.+++....++. .+.+
T Consensus 48 EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s 126 (156)
T 2nxp_A 48 ELSQ-LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDS 126 (156)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHH
Confidence 4455 9999999999999999999999999998776676778999999999998888888777776666 3455
Q ss_pred HHHHHHHHHh
Q 001295 140 RSIMLVELKK 149 (1106)
Q Consensus 140 r~~l~~~l~~ 149 (1106)
-..|+..|++
T Consensus 127 ~~lL~~fL~~ 136 (156)
T 2nxp_A 127 YQLLKRHLQE 136 (156)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 321
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.51 E-value=0.31 Score=51.58 Aligned_cols=231 Identities=12% Similarity=0.091 Sum_probs=118.6
Q ss_pred cCCCEEEEEe-C----CeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCceEEEeeC----C-----CcEEEEEeec
Q 001295 820 KNDSYVMSAS-G----GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMD----D-----SSIQIYNVRV 883 (1106)
Q Consensus 820 ~~~~~l~~~s-d----g~i~vwd~~~~~~~~~--~~~~~~~v~~l~~s~~d~~~la~g~~----d-----g~v~iwd~~~ 883 (1106)
-++.+++.|+ + ..+.+||..+.+.... +....... +++. . ++++++.|+. + ..+.+||..+
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-V-GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-E-TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEE-E-CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 3556666665 2 4688999887654322 11111111 2222 2 6778888876 2 3688899877
Q ss_pred ceE--EEEecCcccCeeEEEEecCCCEEEEEcCC-----CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCC
Q 001295 884 DEV--KSKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 956 (1106)
Q Consensus 884 ~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg 956 (1106)
.+- +..+......-..+. -++++++.|+.+ ..+.+||..+.+= ..+..... . ..-.+++.. ++
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W---~~~~~~p~--~--r~~~~~~~~-~~ 169 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEW---HLVAPMLT--R--RIGVGVAVL-NR 169 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTTEE---EECCCCSS--C--CBSCEEEEE-TT
T ss_pred CeEeECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCCeE---eECCCCCc--c--ccceEEEEE-CC
Confidence 542 222221111112222 267777777644 3588888876431 11111110 0 111222222 56
Q ss_pred cEEEEE-eC-----CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCceeEEee
Q 001295 957 IHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRI 1025 (1106)
Q Consensus 957 ~~l~~~-~d-----~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D-----g~i~vwd~~~~~~~~~~ 1025 (1106)
+.++.+ .+ ..+.+||..+.+-...-........-..+.+ ++++++.|+.+ ..+.+||+.+.+-...-
T Consensus 170 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 247 (308)
T 1zgk_A 170 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVA 247 (308)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECC
Confidence 666663 32 4689999987754332111111111222233 67777777765 45999999887654322
Q ss_pred CCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCC-----cEEEEeecCCCCccCC
Q 001295 1026 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG-----GVHVFEPLESEGKWGV 1078 (1106)
Q Consensus 1026 ~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg-----~v~vW~~~~~~~~~~~ 1078 (1106)
. ++..... . .++.. ++++++.|+.++ .+.++|+.+.+ |..
T Consensus 248 ~----~p~~r~~---~--~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 292 (308)
T 1zgk_A 248 P----MKHRRSA---L--GITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT--WSE 292 (308)
T ss_dssp C----CSSCCBS---C--EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE--EEE
T ss_pred C----CCCCccc---e--EEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE--Eee
Confidence 1 2222101 1 33333 467888887653 46777777654 543
No 322
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.36 E-value=0.61 Score=49.47 Aligned_cols=224 Identities=11% Similarity=0.117 Sum_probs=114.0
Q ss_pred CCeEEEEEcCCCceee-eecCCCCCeeEEEEecCCCceEEEeeC-----C------CcEEEEEeecceE--EEEecCccc
Q 001295 830 GGKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMD-----D------SSIQIYNVRVDEV--KSKLKGHSK 895 (1106)
Q Consensus 830 dg~i~vwd~~~~~~~~-~~~~~~~~v~~l~~s~~d~~~la~g~~-----d------g~v~iwd~~~~~~--~~~l~~h~~ 895 (1106)
...+.+||..+.+-.. .+..........+... ++++++.|+. . ..+.+||..+.+- +..+.....
T Consensus 12 G~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 90 (315)
T 4asc_A 12 EEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC 90 (315)
T ss_dssp TTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred CCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence 3679999998766433 1222222333334444 7788888873 1 1277888877542 222211111
Q ss_pred CeeEEEEecCCCEEEEEcCC--------CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-e-C-
Q 001295 896 RITGLAFSHALNVLVSSGAD--------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H-E- 964 (1106)
Q Consensus 896 ~V~~l~~s~d~~~l~s~s~D--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~-d- 964 (1106)
.- +++. -++++++.|+.+ ..+.+||..+.+ ...+..... ...-.++ ..-+++.++.+ . +
T Consensus 91 ~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~---W~~~~~~p~----~r~~~~~-~~~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 91 LF-GLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFK---WGESDPLPY----VVYGHTV-LSHMDLVYVIGGKGSD 160 (315)
T ss_dssp SC-EEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTE---EEECCCCSS----CCBSCEE-EEETTEEEEECCBCTT
T ss_pred ce-eEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCc---EeECCCCCC----cccceeE-EEECCEEEEEeCCCCC
Confidence 11 1222 266777777742 458888887743 111111111 0111222 33466666664 3 2
Q ss_pred ----CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCC-----eEEEEEcCCceeEEeeCCCcccCCCC
Q 001295 965 ----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKLRCRINPSAYLPAGV 1035 (1106)
Q Consensus 965 ----~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~ 1035 (1106)
..+.+||..+.+-...-........-.++. -++++++.|+.++ .+.+||..+.+-...-. ++...
T Consensus 161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r 234 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA----FPQER 234 (315)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC----CSSCC
T ss_pred CcccceEEEEeCCCCeEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeEEECCC----CCCcc
Confidence 468999998775433221111111112222 2677777777654 58899998876544322 22221
Q ss_pred CCCCccceEEEEeCCCCCEEEEEeCCC--------------cEEEEeecCCCCccCCC
Q 001295 1036 SSSNVHPLVIAAHPQEPNEFALGLSDG--------------GVHVFEPLESEGKWGVP 1079 (1106)
Q Consensus 1036 ~~~~v~~~~~~~~~~d~~~l~t~~~Dg--------------~v~vW~~~~~~~~~~~~ 1079 (1106)
.. . +++.. ++++++.|+.++ .+.++|+.+.+ |...
T Consensus 235 ~~---~--~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~ 283 (315)
T 4asc_A 235 SS---L--SLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK--WEGV 283 (315)
T ss_dssp BS---C--EEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE--EEEE
T ss_pred cc---e--eEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCCh--hhhh
Confidence 11 1 23333 467888888643 35566766654 5543
No 323
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=96.31 E-value=0.0021 Score=57.65 Aligned_cols=81 Identities=14% Similarity=0.214 Sum_probs=63.4
Q ss_pred cccchhhhHHHHHHHHHHHhCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccchhhccCCC-------chHH
Q 001295 67 RYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-------TKSA 139 (1106)
Q Consensus 67 ~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~l~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~-------~~~~ 139 (1106)
++.+ ++|+|+.|.||||+.+|+.++|..++.+.-..+... .+.+++|+.+....++.+++....+++ .+.+
T Consensus 29 EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~~~~~fr~nKy~I~ls~~s 106 (138)
T 2j4b_A 29 DLLP-LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYA 106 (138)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHH
Confidence 3455 999999999999999999999999999877777676 899999999888888877766554544 4566
Q ss_pred HHHHHHHHHh
Q 001295 140 RSIMLVELKK 149 (1106)
Q Consensus 140 r~~l~~~l~~ 149 (1106)
-..|+..|++
T Consensus 107 ~~lL~~fL~~ 116 (138)
T 2j4b_A 107 FDLLINFLEE 116 (138)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666665
No 324
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.31 E-value=1.5 Score=46.69 Aligned_cols=233 Identities=13% Similarity=0.109 Sum_probs=121.8
Q ss_pred CCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCcee--eee----cCCCCCeeEEEEecC---CCceEEEe--eCCCcEE
Q 001295 810 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM--ATF----MPPPPAATFLAFHPQ---DNNIIAIG--MDDSSIQ 877 (1106)
Q Consensus 810 ~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~--~~~----~~~~~~v~~l~~s~~---d~~~la~g--~~dg~v~ 877 (1106)
-.....++|.|||.++++-. .|.|++++..+++.. ..+ .........|+|+|+ ++.+.++- ..++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 34578999999999888887 799999987655432 112 122445789999983 34444432 2345666
Q ss_pred EEEeecc----------eEE-EEec---CcccCeeEEEEecCCCEEEEEcC-------------CCcEEEEeCCCccccc
Q 001295 878 IYNVRVD----------EVK-SKLK---GHSKRITGLAFSHALNVLVSSGA-------------DSQLCVWSSDGWEKQK 930 (1106)
Q Consensus 878 iwd~~~~----------~~~-~~l~---~h~~~V~~l~~s~d~~~l~s~s~-------------Dg~i~vwd~~~~~~~~ 930 (1106)
-|.+..+ +.+ ..+. .|. -..|+|.|||.+.++.+. -|.|.-.+.+..-...
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~ 188 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHN--GGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG 188 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCC--CCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCcc--CccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence 6665441 111 2222 243 357999999988887653 2444434443210000
Q ss_pred c---eeecccCCCCCCCCCCceEEEcCCCcEEEE--EeCCeEEEEecCCceE------------------eeecccCCCC
Q 001295 931 N---RFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLEC------------------VKQWVPRESS 987 (1106)
Q Consensus 931 ~---~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~--~~d~~v~i~d~~~~~~------------------~~~~~~~~h~ 987 (1106)
. .......++ .....++|+|+|.++++ +.++.-.|--+..+.. +..|. .+.
T Consensus 189 nPf~~~~i~a~G~----RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~--~~~ 262 (347)
T 3das_A 189 NPFPGSPVYSYGH----RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWS--TDE 262 (347)
T ss_dssp CSSTTCCEEEBCC----SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEEC--TTT
T ss_pred CCCCCCeEEeeCC----CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecC--CCC
Confidence 0 000111232 24678999999988777 3443333333332221 11111 111
Q ss_pred CCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEE
Q 001295 988 APITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG 1058 (1106)
Q Consensus 988 ~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~ 1058 (1106)
.....|+|. +|..++..-..+.|....+....... ....++. + ..-.+..+...| ||.++++.
T Consensus 263 ~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~--~~e~~l~-~---~~gR~~dv~~~p-DG~lyv~t 325 (347)
T 3das_A 263 ASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAA--DPQAFLE-G---EYGRLRTVAPAG-GDKLWLVT 325 (347)
T ss_dssp CCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESS--CCEEEST-T---TSSCEEEEEEEE-TTEEEEEE
T ss_pred CCCcceEEE-cCceeeccccCCEEEEEEecCCceec--ceEEeec-C---CCCCccEEEECC-CCcEEEEE
Confidence 345667775 45555555555556555665443211 0111121 1 112344777777 67665554
No 325
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.28 E-value=0.99 Score=50.49 Aligned_cols=104 Identities=14% Similarity=0.125 Sum_probs=63.1
Q ss_pred CCeeEEEEecCCCEEEEEeC-CeEEEEEcCCCcee--eeecC------CCCCeeEEEEecC---CCceEEEeeC------
Q 001295 811 EAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTM--ATFMP------PPPAATFLAFHPQ---DNNIIAIGMD------ 872 (1106)
Q Consensus 811 ~~v~~l~~s~~~~~l~~~sd-g~i~vwd~~~~~~~--~~~~~------~~~~v~~l~~s~~---d~~~la~g~~------ 872 (1106)
.....++|.|+|+++++-.. +.|++++..++... ..+.. .......|+|+|+ ++.+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 35679999999998887765 47988886555432 22221 2345779999994 4444444332
Q ss_pred ------CCcEEEEEeecc-------eEE-EEecC-cccCeeEEEEecCCCEEEEEcC
Q 001295 873 ------DSSIQIYNVRVD-------EVK-SKLKG-HSKRITGLAFSHALNVLVSSGA 914 (1106)
Q Consensus 873 ------dg~v~iwd~~~~-------~~~-~~l~~-h~~~V~~l~~s~d~~~l~s~s~ 914 (1106)
...|.-|+...+ +.+ ..+.. .......|+|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665431 112 12221 1123578999999998887654
No 326
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.24 E-value=0.056 Score=58.07 Aligned_cols=126 Identities=16% Similarity=0.191 Sum_probs=78.9
Q ss_pred CCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEE-----e--eeeeeccCcCCccccccccCCCCcCeEEEEEcc-
Q 001295 351 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL-----R--NFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP- 422 (1106)
Q Consensus 351 ~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~-----~--~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp- 422 (1106)
+.|..+..||+|++ ||.-+ +..|.|-.+..+..... . ..+.+.+.. .......+|..+.|+|
T Consensus 66 ~~i~qlvlSpsG~l-LAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~--------~~~~~~s~I~qVlWHPl 135 (452)
T 3pbp_A 66 DDTFHVISSTSGDL-LCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE--------EEVGPKSSIKKVLFHPK 135 (452)
T ss_dssp CTTCEEEECTTSSE-EEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG--------CC--CCCCEEEEEECTT
T ss_pred CceeEEEECCCCCE-EEEec-CCeEEEEEecCccccCcccccccccceeEEEcCC--------cccCCCCceeEEEeccc
Confidence 37889999999996 55543 47899998874432211 0 011121110 0122467899999999
Q ss_pred --CCCEEEEEeCCCeEEEEEccCCceeee-------eeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295 423 --DGSLFGVAYSRHIVQIYSYHGGDEVRQ-------HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 486 (1106)
Q Consensus 423 --dg~~las~~~d~~v~iwd~~~~~~~~~-------~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 486 (1106)
.|..|++-..|++|++||+........ ...+..+...|.+++|..++-.+++++....|.|+-.
T Consensus 136 ~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 136 SYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp BGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred cCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 567899999999999999986321111 0112223356888888887766666666666666543
No 327
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.23 E-value=0.35 Score=51.12 Aligned_cols=188 Identities=10% Similarity=0.055 Sum_probs=99.6
Q ss_pred cCCCEEEEEe-C----CeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCceEEEeeCC------CcEEEEEeecceE
Q 001295 820 KNDSYVMSAS-G----GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDD------SSIQIYNVRVDEV 886 (1106)
Q Consensus 820 ~~~~~l~~~s-d----g~i~vwd~~~~~~~~~--~~~~~~~v~~l~~s~~d~~~la~g~~d------g~v~iwd~~~~~~ 886 (1106)
-++++++.|+ + ..+.+||..+.+.... +........++. - ++++++.|+.+ ..+.+||..+.+-
T Consensus 54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W 130 (306)
T 3ii7_A 54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA--A-EGKIYTSGGSEVGNSALYLFECYDTRTESW 130 (306)
T ss_dssp ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE--E-TTEEEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE--E-CCEEEEECCCCCCCcEeeeEEEEeCCCCce
Confidence 3666777765 3 5688999887654332 221112222222 2 67788888765 4688999887543
Q ss_pred --EEEecCcccCeeEEEEecCCCEEEEEcC---------CCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCC
Q 001295 887 --KSKLKGHSKRITGLAFSHALNVLVSSGA---------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 955 (1106)
Q Consensus 887 --~~~l~~h~~~V~~l~~s~d~~~l~s~s~---------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d 955 (1106)
+..+......-. ++ .-++++++.|+. -..+.+||+.+.+ ...+..... . ..-..++. -+
T Consensus 131 ~~~~~~p~~r~~~~-~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~---W~~~~~~p~--~--r~~~~~~~-~~ 200 (306)
T 3ii7_A 131 HTKPSMLTQRCSHG-MV-EANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET---WTELCPMIE--A--RKNHGLVF-VK 200 (306)
T ss_dssp EEECCCSSCCBSCE-EE-EETTEEEEECCEESCTTTCEECCCEEEEETTTTE---EEEECCCSS--C--CBSCEEEE-ET
T ss_pred EeCCCCcCCcceeE-EE-EECCEEEEECCCCCCCCcccccceEEEeCCCCCe---EEECCCccc--h--hhcceEEE-EC
Confidence 222221111111 22 236677777764 2448889988743 222211111 0 11122222 26
Q ss_pred CcEEEEE-eC-----CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCceeE
Q 001295 956 QIHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1022 (1106)
Q Consensus 956 g~~l~~~-~d-----~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D-----g~i~vwd~~~~~~~ 1022 (1106)
++.++.+ .+ ..+.+||..+.+-...-..........++.+ ++++++.|+.+ ..+.+||..+.+-.
T Consensus 201 ~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 201 DKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp TEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred CEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 6666663 22 4689999988754332111111112223333 67788888754 46899999887644
No 328
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=96.19 E-value=0.0016 Score=59.05 Aligned_cols=82 Identities=18% Similarity=0.279 Sum_probs=63.3
Q ss_pred ccccchhhhHHHHHHHHHHHhCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccchhhccCCC-------chH
Q 001295 66 NRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-------TKS 138 (1106)
Q Consensus 66 ~~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~l~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~-------~~~ 138 (1106)
.++.+ ++|+|+.|.||||+.++ .++|..++.+.-..+...+.+.+++|+.+....++.+++....++. .+.
T Consensus 30 ~EL~~-lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~~n~~~~~fr~nKy~I~ls~~ 107 (148)
T 2j49_A 30 PELSY-IMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKT 107 (148)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHH
Confidence 34555 99999999999999999 9999999997766665667788888888887777777766555555 356
Q ss_pred HHHHHHHHHHh
Q 001295 139 ARSIMLVELKK 149 (1106)
Q Consensus 139 ~r~~l~~~l~~ 149 (1106)
+-..|+..|++
T Consensus 108 s~~lL~~fL~~ 118 (148)
T 2j49_A 108 TLNLLLYFLNE 118 (148)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666664
No 329
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.16 E-value=1.9 Score=46.49 Aligned_cols=113 Identities=12% Similarity=0.162 Sum_probs=59.9
Q ss_pred CCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC---CCE
Q 001295 350 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GSL 426 (1106)
Q Consensus 350 ~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~ 426 (1106)
-...+.|+|.|+|++|++ +...|.|++++.. +.... .+ -++. .+..........|+|+|| +.+
T Consensus 17 l~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~--~~--~~~~--------~v~~~g~~g~~gia~~pdf~~~g~ 82 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSA--PL--SGVP--------DVWAHGQGGLLDVVLAPDFAQSRR 82 (353)
T ss_dssp ESSEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECC--CC--BSCC--------CCCCSTTCSEEEEEECTTHHHHCE
T ss_pred CCCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-Cceee--Ee--cCCc--------ccccCCCCCceeEEECCCCCCCCE
Confidence 356799999999995344 4567999999853 32110 00 0000 011223446789999996 444
Q ss_pred EEEE-eC-------CCeEEEEEccCCc----eeeeee-eec---cccCCeeEEEEcCCCCceEEEEe
Q 001295 427 FGVA-YS-------RHIVQIYSYHGGD----EVRQHL-EID---AHVGGVNDIAFSHPNKQLCVITC 477 (1106)
Q Consensus 427 las~-~~-------d~~v~iwd~~~~~----~~~~~~-~l~---~h~~~V~~~~~s~d~~~~~l~s~ 477 (1106)
|..+ +. ...|..|++..+. ..+.+. .+. .....-..|+|.|||. +++..|
T Consensus 83 lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G 148 (353)
T 2g8s_A 83 IWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALG 148 (353)
T ss_dssp EEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEEC
T ss_pred EEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEEC
Confidence 4443 22 2356667765431 111111 111 1111246799999995 344443
No 330
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=96.10 E-value=0.0028 Score=50.16 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHhHhcHHHHHHHHHHhhCCCccH--HHHHHHHhcCCHHHHHHHhccc
Q 001295 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFNM--KYFEDEVHNGNWDDVEKYLSGF 60 (1106)
Q Consensus 5 ~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~~--~~~~~~i~~g~w~~~~~~l~~~ 60 (1106)
++|+.+-|++||..+||.+++.+|.+|.++..+. ..-..-+|+-.|..++.+=+++
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKKI 67 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKV 67 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHHH
Confidence 6799999999999999999999999999988751 1223446677777766655444
No 331
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.94 E-value=0.69 Score=48.66 Aligned_cols=187 Identities=11% Similarity=0.111 Sum_probs=97.3
Q ss_pred CCCEEEEEe-C-----CeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCceEEEeeCCC-----cEEEEEeecceE-
Q 001295 821 NDSYVMSAS-G-----GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDEV- 886 (1106)
Q Consensus 821 ~~~~l~~~s-d-----g~i~vwd~~~~~~~~~--~~~~~~~v~~l~~s~~d~~~la~g~~dg-----~v~iwd~~~~~~- 886 (1106)
++++++.|+ + ..+.+||..+.+.... +........++. - ++++++.|+.++ .+.+||+.+.+-
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~ 137 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV--L-NGLLYAVGGFDGSTGLSSVEAYNIKSNEWF 137 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--E-TTEEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE--E-CCEEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence 677777775 3 3588999887553322 221111222222 2 677888887664 577888776542
Q ss_pred -EEEecCcccCeeEEEEecCCCEEEEEcCC-------CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcE
Q 001295 887 -KSKLKGHSKRITGLAFSHALNVLVSSGAD-------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 958 (1106)
Q Consensus 887 -~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~ 958 (1106)
+..+......- +++. -++++++.|+.+ ..+.+||+.+.+ ...+..... . ..-.+++ .-+++.
T Consensus 138 ~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~---W~~~~~~p~--~--r~~~~~~-~~~~~i 207 (302)
T 2xn4_A 138 HVAPMNTRRSSV-GVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNE---WTYIAEMST--R--RSGAGVG-VLNNLL 207 (302)
T ss_dssp EECCCSSCCBSC-EEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTE---EEEECCCSS--C--CBSCEEE-EETTEE
T ss_pred ecCCCCCcccCc-eEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCc---EEECCCCcc--c--cccccEE-EECCEE
Confidence 22222111111 2222 366777777653 348889987643 122211111 0 1112222 235666
Q ss_pred EEEE-eC-----CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCC-----eEEEEEcCCceeE
Q 001295 959 FLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKLR 1022 (1106)
Q Consensus 959 l~~~-~d-----~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg-----~i~vwd~~~~~~~ 1022 (1106)
++.+ .+ ..+.+||..+.+-...-........-..+. -++++++.|+.++ .|.+||..+.+-.
T Consensus 208 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 208 YAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp EEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred EEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 6663 32 469999998775443221111111111222 2677777777654 4899999887654
No 332
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.94 E-value=0.73 Score=49.23 Aligned_cols=186 Identities=11% Similarity=0.018 Sum_probs=94.1
Q ss_pred CeEEEEEccCCCEEEEEe------------CCCeEEEEEccCCce-eeeeeeecc-----ccCCeeEEEEcC--CCCceE
Q 001295 414 SVNRVIWSPDGSLFGVAY------------SRHIVQIYSYHGGDE-VRQHLEIDA-----HVGGVNDIAFSH--PNKQLC 473 (1106)
Q Consensus 414 ~V~~l~~spdg~~las~~------------~d~~v~iwd~~~~~~-~~~~~~l~~-----h~~~V~~~~~s~--d~~~~~ 473 (1106)
....++..|+|..+++++ .+|.|.++|.++... ...+ .+.+ .......+.+.+ ++...+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 455677889886666652 689999999984311 2222 2332 234667777765 454313
Q ss_pred EEEecC--CCcEEEEeCCCCce----eEEEecc-CCCeEEEeccccCCceEEEEEec-----------------CCeEEE
Q 001295 474 VITCGD--DKTIKVWDATNGAK----QYIFEGH-EAPVYSVCPHHKENIQFIFSTAL-----------------DGKIKA 529 (1106)
Q Consensus 474 l~s~~~--d~~i~iwd~~~~~~----~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~-----------------dg~i~i 529 (1106)
++.-.. +.+|.+|++..+.. +.++.+. -...+.+.+. ++|.+.++... .|.|..
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~--~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV--GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE--ETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEe--CCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 333222 57888888765322 2233332 2345666654 34455555431 122333
Q ss_pred EeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEE-CCCeEEEEECCC-cce--eEEEc
Q 001295 530 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDS-VQL--LTSID 605 (1106)
Q Consensus 530 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~-~~~--~~~~~ 605 (1106)
+|. .+ ...+. ..-..-+.++|+|+++.++.+. ..+.|+.|++.. ++. .+.+.
T Consensus 208 ~d~--~~-~~~~~---------------------~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~ 263 (355)
T 3sre_A 208 YSP--ND-VRVVA---------------------EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS 263 (355)
T ss_dssp ECT--TC-CEEEE---------------------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE
T ss_pred EEC--Ce-EEEee---------------------cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe
Confidence 322 11 11111 1111334466666666666554 578899998853 332 12232
Q ss_pred cCCCCCCcCeEEEcc-CCCEEEEEe
Q 001295 606 ADGGLPASPRIRFNK-DGCLLAVST 629 (1106)
Q Consensus 606 ~~~~~~~v~~v~~s~-~~~~l~~~~ 629 (1106)
. ....-.+++.+ +|++.+++.
T Consensus 264 ~---~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 264 F---DTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp C---SSEEEEEEECTTTCCEEEEEE
T ss_pred C---CCCCceEEEeCCCCcEEEEec
Confidence 1 12234567777 477666544
No 333
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.86 E-value=0.39 Score=59.80 Aligned_cols=236 Identities=14% Similarity=0.133 Sum_probs=141.1
Q ss_pred eEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec-ceEEEEecC
Q 001295 814 PCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLKG 892 (1106)
Q Consensus 814 ~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~-~~~~~~l~~ 892 (1106)
-+.-++|..+.+|.-...++.|||+++...+..+.-. ..|.-=.|-. .+.|+..+ +..|+-|++.. ..+.+.+.-
T Consensus 69 dsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~~-e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR 144 (1630)
T 1xi4_A 69 DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDR 144 (1630)
T ss_pred hhhccCCCcceEEEecCCeEEEeehHHhhhhcccccC-CCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhc
Confidence 3456788888888777889999999988777666533 3466556654 44555554 56899999964 234444444
Q ss_pred c----ccCeeEEEEecCCCEEEEEc-------CCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEE---cCCCcE
Q 001295 893 H----SKRITGLAFSHALNVLVSSG-------ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF---HQDQIH 958 (1106)
Q Consensus 893 h----~~~V~~l~~s~d~~~l~s~s-------~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---s~dg~~ 958 (1106)
| ...|..-..+++.+|++..| -.|.+.+|+++.+. -+..+||.. .-..+.+ .+....
T Consensus 145 ~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~------sQ~iegha~---~F~~~~~~~~~~~~~l 215 (1630)
T 1xi4_A 145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA---SFAQFKMEGNAEESTL 215 (1630)
T ss_pred chhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc------chhhhHhHh---hhheeccCCCCCCceE
Confidence 4 35677777889999987544 34788999988743 233344432 1111111 112223
Q ss_pred EEEEe----CCeEEEEecCCc---e------Eeee-cccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEe
Q 001295 959 FLVVH----ETQLAIFETTKL---E------CVKQ-WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCR 1024 (1106)
Q Consensus 959 l~~~~----d~~v~i~d~~~~---~------~~~~-~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~ 1024 (1106)
++.+. .+++.|.++... . .+.. +..+.-.+-..++..|+.-..+...+.-|.|+++|+.||..+.+
T Consensus 216 ~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~ 295 (1630)
T 1xi4_A 216 FCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 295 (1630)
T ss_pred EEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhh
Confidence 33232 267888887543 1 1111 11112244456788888888888888999999999999998865
Q ss_pred eCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295 1025 INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus 1025 ~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
-. +. +..|. ..+.....+ =++.....|.|.--.+.+..
T Consensus 296 ~r----is----~~~iF--~~~~~~~~~-g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 296 NR----IS----GETIF--VTAPHEATA-GIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred cc----cc----CCceE--EeccCCCCC-ceEEEcCCceEEEEEEccch
Confidence 44 11 11133 222222122 23334467777666666555
No 334
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.77 E-value=1.2 Score=48.23 Aligned_cols=198 Identities=8% Similarity=-0.047 Sum_probs=94.5
Q ss_pred CCCEEEEEeC-----------CeEEEEEcCCCceeeeecCC-CCCeeEEEEecCCCceEEEeeCC---------------
Q 001295 821 NDSYVMSASG-----------GKISLFNMMTFKTMATFMPP-PPAATFLAFHPQDNNIIAIGMDD--------------- 873 (1106)
Q Consensus 821 ~~~~l~~~sd-----------g~i~vwd~~~~~~~~~~~~~-~~~v~~l~~s~~d~~~la~g~~d--------------- 873 (1106)
++++++.|+. ..+.+||..+.+-...-... .......+... ++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~ 143 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVH-NGKAYVTGGVNQNIFNGYFEDLNEAG 143 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEE-TTEEEEEECCCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEE-CCEEEEEeCcCCCcCcccccchhhcC
Confidence 5666665542 34889998875533221111 11112212224 77888888865
Q ss_pred ------------------------CcEEEEEeecce--EEEEecCcccCeeEEEEecCCCEEEEEcCC------CcEEEE
Q 001295 874 ------------------------SSIQIYNVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVW 921 (1106)
Q Consensus 874 ------------------------g~v~iwd~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------g~i~vw 921 (1106)
..+.+||..+.+ .+..+......-.+++. -++++++.|+.+ ..+.+|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~ 222 (357)
T 2uvk_A 144 KDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFEL 222 (357)
T ss_dssp TCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEE
T ss_pred CcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEE
Confidence 468899987643 33333211111022333 256677777643 346777
Q ss_pred eCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEe-C----------------------CeEEEEecCCceEe
Q 001295 922 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH-E----------------------TQLAIFETTKLECV 978 (1106)
Q Consensus 922 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~-d----------------------~~v~i~d~~~~~~~ 978 (1106)
|++.... ....+....... ......+...+++.++.+. + ..+.+||+.+.+-.
T Consensus 223 d~d~~~~-~W~~~~~~~~~~---~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~ 298 (357)
T 2uvk_A 223 DFTGNNL-KWNKLAPVSSPD---GVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWD 298 (357)
T ss_dssp ECC---C-EEEECCCSSTTT---CCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CE
T ss_pred EecCCCC-cEEecCCCCCCc---ccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCcee
Confidence 7622111 122221111000 0112223444666666632 1 25778998875432
Q ss_pred eecccCCCCCCeeEEEECCCCCEEEEEEcCC------eEEEEEcCCceeEEeeC
Q 001295 979 KQWVPRESSAPITHATFSCDSQLVYACFLDA------TVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus 979 ~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg------~i~vwd~~~~~~~~~~~ 1026 (1106)
..-........ ..+..-++++++.|+.++ .|.++++++++.+....
T Consensus 299 ~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 299 KSGELSQGRAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp EEEECSSCCBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred eCCCCCCCccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 22111111111 122334778888888653 46677999888876655
No 335
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.69 E-value=1.1 Score=47.30 Aligned_cols=193 Identities=13% Similarity=0.091 Sum_probs=97.9
Q ss_pred EEecCCCEEEEEe-----CC-------eEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCceEEEeeCC--------C
Q 001295 817 ALSKNDSYVMSAS-----GG-------KISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDD--------S 874 (1106)
Q Consensus 817 ~~s~~~~~l~~~s-----dg-------~i~vwd~~~~~~~~~--~~~~~~~v~~l~~s~~d~~~la~g~~d--------g 874 (1106)
+...++++++.|+ ++ .+.+||..+.+.... +....... +++.. ++++++.|+.+ .
T Consensus 41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~ 117 (315)
T 4asc_A 41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF-GLGEA--LNSIYVVGGREIKDGERCLD 117 (315)
T ss_dssp EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC-EEEEE--TTEEEEECCEESSTTCCBCC
T ss_pred EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce-eEEEE--CCEEEEEeCCcCCCCCcccc
Confidence 3345777777665 11 277888877554221 11111111 22222 66788888743 3
Q ss_pred cEEEEEeecce--EEEEecCcccCeeEEEEecCCCEEEEEcC-C-----CcEEEEeCCCcccccceeecccCCCCCCCCC
Q 001295 875 SIQIYNVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGA-D-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQS 946 (1106)
Q Consensus 875 ~v~iwd~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1106)
.+.+||..+.+ .+..+... .....+...++++++.|+. + ..+.+||..+.+ ...+..... ...
T Consensus 118 ~~~~~d~~~~~W~~~~~~p~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~---W~~~~~~p~----~r~ 188 (315)
T 4asc_A 118 SVMCYDRLSFKWGESDPLPYV--VYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFE---WKELAPMQT----ARS 188 (315)
T ss_dssp CEEEEETTTTEEEECCCCSSC--CBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTE---EEECCCCSS----CCB
T ss_pred eEEEECCCCCcEeECCCCCCc--ccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCe---EEECCCCCC----chh
Confidence 68899988754 22222211 1111222246677777776 2 458889887743 111211110 011
Q ss_pred CceEEEcCCCcEEEE-EeCC-----eEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCC-----------
Q 001295 947 DTRVQFHQDQIHFLV-VHET-----QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----------- 1009 (1106)
Q Consensus 947 i~~~~~s~dg~~l~~-~~d~-----~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg----------- 1009 (1106)
-..++ .-+++.++. +.++ .+.+||..+.+-...-........-..+.+ ++++++.|+.++
T Consensus 189 ~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~ 265 (315)
T 4asc_A 189 LFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPT 265 (315)
T ss_dssp SCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEE
T ss_pred ceEEE-EECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECCccccCcCCcccccc
Confidence 12222 236666666 4332 588999988754433211111111122222 667777777542
Q ss_pred ---eEEEEEcCCceeEEe
Q 001295 1010 ---TVCVFSAANLKLRCR 1024 (1106)
Q Consensus 1010 ---~i~vwd~~~~~~~~~ 1024 (1106)
.|.+||..+.+-...
T Consensus 266 ~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 266 ELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEEEEEEEETTTTEEEEE
T ss_pred ccCcEEEecCCCChhhhh
Confidence 477889888765543
No 336
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.66 E-value=0.32 Score=60.56 Aligned_cols=246 Identities=9% Similarity=0.075 Sum_probs=139.9
Q ss_pred EEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCCCe
Q 001295 356 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 435 (1106)
Q Consensus 356 ~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 435 (1106)
...+|..+ ++|.-. ..++.|+|+++.+.+....+ ...|..=.|-.+. .|+..+ +..
T Consensus 71 AIMnP~~~-iiALra-g~~lQiFnl~~k~klks~~~--------------------~e~VvfWkWis~~-~l~lVT-~~a 126 (1630)
T 1xi4_A 71 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DNA 126 (1630)
T ss_pred hccCCCcc-eEEEec-CCeEEEeehHHhhhhccccc--------------------CCCceEEEecCCC-eeEEEc-CCe
Confidence 44677776 566644 67899999998877654211 2356666776444 455554 456
Q ss_pred EEEEEccCCceeeeeeeeccc----cCCeeEEEEcCCCCceEEEEec------CCCcEEEEeCCCCceeEEEeccCCCeE
Q 001295 436 VQIYSYHGGDEVRQHLEIDAH----VGGVNDIAFSHPNKQLCVITCG------DDKTIKVWDATNGAKQYIFEGHEAPVY 505 (1106)
Q Consensus 436 v~iwd~~~~~~~~~~~~l~~h----~~~V~~~~~s~d~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~h~~~v~ 505 (1106)
|.-|++.+..... ..+..| ...|..-.-+++.++ ++++|= -.|.+.+|..+.+ ..+.+.||.+...
T Consensus 127 VyHW~~~~~s~P~--k~fdR~~~L~~~QIinY~~d~~~kW-~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~ 202 (1630)
T 1xi4_A 127 VYHWSMEGESQPV--KMFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFA 202 (1630)
T ss_pred EEEeccCCCCccH--HHHhcchhcccCeeEEeeeCCCCCe-EEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhh
Confidence 9999997533222 234444 346777788899986 333332 4578889986544 3456777766554
Q ss_pred EEeccccCCceEEEE-Eec---CCeEEEEeCCCC-CceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCE
Q 001295 506 SVCPHHKENIQFIFS-TAL---DGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 580 (1106)
Q Consensus 506 ~~~~~~~~~~~~l~s-~~~---dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~ 580 (1106)
.+.....+....+++ +.. .+.+++-++... .... ........+.|.|+.. ...-..+..++.-..
T Consensus 203 ~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~---~f~kk~~~~~~~~~~~-------~Dfpv~~~vs~k~g~ 272 (1630)
T 1xi4_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ---PFPKKAVDVFFPPEAQ-------NDFPVAMQISEKHDV 272 (1630)
T ss_pred eeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCC---CCccccccccCCcccc-------cCcceEEEeccccCE
Confidence 444322222122332 222 268888888543 1111 1112234455555432 113344666777777
Q ss_pred EEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccC
Q 001295 581 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 641 (1106)
Q Consensus 581 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 641 (1106)
+...+.-|.|.+||+.++.++..-+.... .|...+.+....-++.....|.|.-..+..
T Consensus 273 iy~itk~G~~~~~d~~t~~~i~~~ris~~--~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 273 VFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (1630)
T ss_pred EEEEecCceEEEEecccchhhhhccccCC--ceEEeccCCCCCceEEEcCCceEEEEEEcc
Confidence 88889999999999999988765543322 333333333322333334556555544443
No 337
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.59 E-value=0.097 Score=55.45 Aligned_cols=199 Identities=7% Similarity=0.023 Sum_probs=106.5
Q ss_pred ceEEEeeCCCcEEEEEeecceEEEEecCc-ccCeeEEEE--ec-CCCEEEEE-cCCCcEEEEeCCCcccccceeecccCC
Q 001295 865 NIIAIGMDDSSIQIYNVRVDEVKSKLKGH-SKRITGLAF--SH-ALNVLVSS-GADSQLCVWSSDGWEKQKNRFLQIPTG 939 (1106)
Q Consensus 865 ~~la~g~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~--s~-d~~~l~s~-s~Dg~i~vwd~~~~~~~~~~~~~~~~~ 939 (1106)
.++++++.||.|+-+|..+|+.+-++... ..++....- .+ ++..++.. +.||.|..++..+|.......+.....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47888999999999999999998887654 122221110 01 22333333 589999999888764332111111100
Q ss_pred CCCCCCCCceEEE------------cCCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCC-----eeEEEEC-----C
Q 001295 940 RTPTAQSDTRVQF------------HQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAP-----ITHATFS-----C 997 (1106)
Q Consensus 940 ~~~~~~~i~~~~~------------s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~-----v~~l~~s-----~ 997 (1106)
..-+.. +.+|..++.+.++.+...|+.+|+.+..+....-... ..|.... .
T Consensus 91 -------~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~ 163 (339)
T 2be1_A 91 -------TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQE 163 (339)
T ss_dssp -------TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-------------------
T ss_pred -------ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccccc
Confidence 011221 2455555558999999999999999988764321111 1112111 1
Q ss_pred CCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCCCcc
Q 001295 998 DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1076 (1106)
Q Consensus 998 d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~~~~ 1076 (1106)
.+..|+.+..+..+.+.+ .+|+ +..+....+.+... ...+. ..-..+. |+.+ +.++.||.|.-.|..+|+..|
T Consensus 164 ~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~-~~~~~-~~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 164 CENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVL-DVPLA-LQNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp -CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTT-THHHH-TTCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred CCCeEEEecceEEEEEEC-CCCC-eEEEeccccccccc-ccccc-ccccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence 245677777787777766 4554 32222111111110 00000 0000011 3455 446778888888888888777
No 338
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.54 E-value=1.2 Score=48.10 Aligned_cols=91 Identities=21% Similarity=0.246 Sum_probs=49.1
Q ss_pred CCCEEEEEe--CCeEEEEEcCC--Cce--eeeec-CCCCCeeEEEEecCCCceEEEeeC-C---------CcEEEEEeec
Q 001295 821 NDSYVMSAS--GGKISLFNMMT--FKT--MATFM-PPPPAATFLAFHPQDNNIIAIGMD-D---------SSIQIYNVRV 883 (1106)
Q Consensus 821 ~~~~l~~~s--dg~i~vwd~~~--~~~--~~~~~-~~~~~v~~l~~s~~d~~~la~g~~-d---------g~v~iwd~~~ 883 (1106)
++++++.|+ ...+.+||..+ .+. +..+. ...... +++. - ++++++.|+. + ..+.+||..+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~-~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQA-TSAF-I-DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSC-EEEE-E-TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccc-eEEE-E-CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 677777776 46799999864 222 22222 111112 2222 2 6778888876 2 3688999877
Q ss_pred ceE--EEEecCcccCeeEEEEecCCCEEEEEcCC
Q 001295 884 DEV--KSKLKGHSKRITGLAFSHALNVLVSSGAD 915 (1106)
Q Consensus 884 ~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~D 915 (1106)
.+- +..+. ........+...++++++.|+.+
T Consensus 96 ~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 96 NSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp TEEEECSCCC-SSCCSSEEEEEETTEEEEEECCC
T ss_pred CcEEECCCCC-CcccccceEEEECCEEEEEeCcC
Confidence 542 22222 01111222223577888888865
No 339
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.53 E-value=2.4 Score=44.76 Aligned_cols=222 Identities=14% Similarity=0.104 Sum_probs=110.2
Q ss_pred CeEEEEEcCCCceeee-ecCCCCCeeEEEEecCCCceEEEeeC----CC-------cEEEEEeecceEE--EEecCcccC
Q 001295 831 GKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMD----DS-------SIQIYNVRVDEVK--SKLKGHSKR 896 (1106)
Q Consensus 831 g~i~vwd~~~~~~~~~-~~~~~~~v~~l~~s~~d~~~la~g~~----dg-------~v~iwd~~~~~~~--~~l~~h~~~ 896 (1106)
..+..||..+.+.... +..........+... ++++++.|+. ++ .+.+||..+.+-. ..+......
T Consensus 24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 102 (318)
T 2woz_A 24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL 102 (318)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred cceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence 4588999887665432 221122223333344 7788888873 12 1778887765432 222211111
Q ss_pred eeEEEEecCCCEEEEEcCC-------CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-e-----
Q 001295 897 ITGLAFSHALNVLVSSGAD-------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H----- 963 (1106)
Q Consensus 897 V~~l~~s~d~~~l~s~s~D-------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~----- 963 (1106)
- +++. -++++++.|+.+ ..+.+||..+.+ ...+...... ..-.+++. .+++.++.+ .
T Consensus 103 ~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~---W~~~~~~p~~----r~~~~~~~-~~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 103 F-GLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAK---WSEVKNLPIK----VYGHNVIS-HNGMIYCLGGKTDDKK 172 (318)
T ss_dssp C-EEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTE---EEEECCCSSC----EESCEEEE-ETTEEEEECCEESSSC
T ss_pred c-ceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCC---EeECCCCCCc----ccccEEEE-ECCEEEEEcCCCCCCC
Confidence 1 2222 267777777754 247778877643 1222111100 01122233 566666663 2
Q ss_pred -CCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCceeEEeeCCCcccCCCCCC
Q 001295 964 -ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAYLPAGVSS 1037 (1106)
Q Consensus 964 -d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1037 (1106)
-..+.+||..+.+-...-........-.++. -++++++.|+.+ ..+.+||..+.+-...-. +|.....
T Consensus 173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r~~ 246 (318)
T 2woz_A 173 CTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTE----FPQERSS 246 (318)
T ss_dssp BCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCC----CSSCCBS
T ss_pred ccceEEEEcCCCCEEEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCC----CCCcccc
Confidence 1358999998875433311111111112222 266777777643 357889988876443211 2222111
Q ss_pred CCccceEEEEeCCCCCEEEEEeCC--------------CcEEEEeecCCCCccCC
Q 001295 1038 SNVHPLVIAAHPQEPNEFALGLSD--------------GGVHVFEPLESEGKWGV 1078 (1106)
Q Consensus 1038 ~~v~~~~~~~~~~d~~~l~t~~~D--------------g~v~vW~~~~~~~~~~~ 1078 (1106)
. .+... ++++++.|+.+ ..+.++|+.+.+ |..
T Consensus 247 ---~--~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~ 292 (318)
T 2woz_A 247 ---I--SLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE--WAG 292 (318)
T ss_dssp ---C--EEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE--EEE
T ss_pred ---e--EEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE--ehh
Confidence 1 23333 46788888765 346677776654 554
No 340
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.42 E-value=0.11 Score=50.25 Aligned_cols=148 Identities=12% Similarity=-0.000 Sum_probs=83.8
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCC--------eeEEEEecCCCceEEEeeCCCcEEEEEeec
Q 001295 812 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPA--------ATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 883 (1106)
Q Consensus 812 ~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~--------v~~l~~s~~d~~~la~g~~dg~v~iwd~~~ 883 (1106)
.++.++|+|+|.+.++ .+|.+.-.+..+.....-+. .... -.++.|.| ++.+.++ .||.|+-++-.+
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~-s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMG-RAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHH-HCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccc-cccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCc
Confidence 5679999999998887 88887777665422211111 1112 37899999 8888887 569888777533
Q ss_pred ceEE------EEe-cCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCC
Q 001295 884 DEVK------SKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 956 (1106)
Q Consensus 884 ~~~~------~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg 956 (1106)
...- .++ .+-=..+..|.|.|+|.+.+.. |+.+.-+.-.+............-+... -..-+.+.|+++|
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g-~~~yr~l~f~~~G 193 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGG-WDTFKFLFFSSVG 193 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSS-GGGEEEEEECTTS
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCC-cceEEEEEECCCC
Confidence 1100 111 1112457899999999888877 7765433333211111000000000000 0122456799999
Q ss_pred cEEEEEeCCeEE
Q 001295 957 IHFLVVHETQLA 968 (1106)
Q Consensus 957 ~~l~~~~d~~v~ 968 (1106)
...++. ++.+.
T Consensus 194 ~l~~v~-~g~~Y 204 (236)
T 1tl2_A 194 TLFGVQ-GGKFY 204 (236)
T ss_dssp CEEEEE-TTEEE
T ss_pred cEEEEe-CCeEE
Confidence 888877 66443
No 341
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.41 E-value=2.4 Score=47.10 Aligned_cols=195 Identities=12% Similarity=0.140 Sum_probs=113.3
Q ss_pred cCCCEEEEEe--CCeEEEEEcCCCceeeeecC-CCCCeeEEEEe--cCCCceEEEeeC-------CCcE---------EE
Q 001295 820 KNDSYVMSAS--GGKISLFNMMTFKTMATFMP-PPPAATFLAFH--PQDNNIIAIGMD-------DSSI---------QI 878 (1106)
Q Consensus 820 ~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~-~~~~v~~l~~s--~~d~~~la~g~~-------dg~v---------~i 878 (1106)
.||+||..-. +..|...++...++-..+.- ....+..++|- | +..|++.+++ ||.. .+
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~ 218 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM 218 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence 4889999988 57788899988887665542 34567777776 5 5556666653 2221 11
Q ss_pred E---EeecceEEEEecCcccCeeEEEEecCCCEEEEEcCC---------------CcEEEEeCCC-------cccccce-
Q 001295 879 Y---NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD---------------SQLCVWSSDG-------WEKQKNR- 932 (1106)
Q Consensus 879 w---d~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D---------------g~i~vwd~~~-------~~~~~~~- 932 (1106)
| |..+.+...++.- .+..-.+...++|++.++.+.+ ..+.++++.. ++.....
T Consensus 219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 1 1112222111110 1122234556778887776543 1255555432 1110000
Q ss_pred -eecccCCCC------------CCCCCCceEEEcCCCcEEEEE--eCCeEEEEecCCceE-------------eeecccC
Q 001295 933 -FLQIPTGRT------------PTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLEC-------------VKQWVPR 984 (1106)
Q Consensus 933 -~~~~~~~~~------------~~~~~i~~~~~s~dg~~l~~~--~d~~v~i~d~~~~~~-------------~~~~~~~ 984 (1106)
-..+..+.. +.......+.++|||++++++ .+.++.++|.++... +....
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-- 375 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-- 375 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--
Confidence 011111111 122456889999999999995 567899999885321 12222
Q ss_pred CCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCc
Q 001295 985 ESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1019 (1106)
Q Consensus 985 ~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~ 1019 (1106)
-.......+|.++|....+-..|..|.-|++...
T Consensus 376 -~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 376 -LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp -CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred -CCCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 1456789999999955556668999999999764
No 342
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.26 E-value=2.9 Score=43.59 Aligned_cols=172 Identities=14% Similarity=0.091 Sum_probs=97.8
Q ss_pred ecCCCEEEEEe---CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCC--------------CcEEEEEe
Q 001295 819 SKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD--------------SSIQIYNV 881 (1106)
Q Consensus 819 s~~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~d--------------g~v~iwd~ 881 (1106)
+.++.+|.... ++.|...+..... ...+.. -.+--+++ ++.+|+..... ..|+..++
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~----~~~~~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~ 95 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN----DTAMYINA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR 95 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE----EEEEEEEE-CSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC----CceeeEEE-cCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence 45777777665 4667777765433 333331 12345677 66666665443 35666666
Q ss_pred ecceEEEEecCcccCeeEEEEecCCCEEEEEc--CCCc--EEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCc
Q 001295 882 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSG--ADSQ--LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI 957 (1106)
Q Consensus 882 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s--~Dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~ 957 (1106)
..++. ..+... .+..|++++++|+-.. .++. |..-+++... ..++.. . .+ .+|+++|+
T Consensus 96 dg~~~-~~l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~--~~~lt~---~------~~--~~~~~~g~ 157 (302)
T 3s25_A 96 NGHGS-TVLDPD----PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE--KKKIKN---H------YL--FTCNTSDR 157 (302)
T ss_dssp TSCCC-EEEECS----CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC--CEEEES---S------CC--CCSEEETT
T ss_pred CCCcc-eEeecC----CccEEEEeCCEEEEEeecCCCCceEEEEECCCCC--eEEEeC---C------Cc--eEeeEECC
Confidence 65542 223211 1236788999998776 3444 4444555422 122221 1 11 35688999
Q ss_pred EEEEEe--CCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC--CeEEEEEcCCce
Q 001295 958 HFLVVH--ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD--ATVCVFSAANLK 1020 (1106)
Q Consensus 958 ~l~~~~--d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D--g~i~vwd~~~~~ 1020 (1106)
.|.-.. ..+|.+.++..+.....+. .... ..+.|++++|+-...+ ..|..-+++.+.
T Consensus 158 ~iy~t~~g~~~Iy~~~l~g~~~~~l~~-----~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 158 YFYYNNPKNGQLYRYDTASQSEALFYD-----CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp EEEEECTTTCCEEEEETTTTEEEEEEC-----SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred EEEEEeCCCceEEEEECCCCCEEEEeC-----CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 888754 4678888888776544432 1222 3456999998876644 356666666554
No 343
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.24 E-value=0.12 Score=49.99 Aligned_cols=147 Identities=12% Similarity=0.054 Sum_probs=83.1
Q ss_pred CeeEEEEecCCCceEEEeeCCCcEEEEEeecceE------EEEe--cCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCC
Q 001295 853 AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV------KSKL--KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 924 (1106)
Q Consensus 853 ~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~------~~~l--~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~ 924 (1106)
.++.++|+| ++.+.++ .+|.++-.+..+... -..+ .+... -.++.|.|+|.+.++ .||.|.-++-.
T Consensus 42 ~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 677999999 8888877 677776666544111 0111 01122 478899999998888 56888777654
Q ss_pred Ccccccceee--cccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEee-----ecccCCCCCCeeEEEECC
Q 001295 925 GWEKQKNRFL--QIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVK-----QWVPRESSAPITHATFSC 997 (1106)
Q Consensus 925 ~~~~~~~~~~--~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~-----~~~~~~h~~~v~~l~~s~ 997 (1106)
+.......-. .+-.+.- ..+..+.|.|+|.+.++. ++.+.-....+..... ..........-..+.|++
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw---~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~ 191 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGW---SGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS 191 (236)
T ss_dssp CSTTCCHHHHSEEEECSSG---GGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred cCCCCceeccccEeccCCC---CceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence 3222221100 0000000 246889999999999998 8886443333211100 000011222344566888
Q ss_pred CCCEEEEEEcCCeE
Q 001295 998 DSQLVYACFLDATV 1011 (1106)
Q Consensus 998 d~~~l~t~s~Dg~i 1011 (1106)
++.+.++. +|.+
T Consensus 192 ~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 192 VGTLFGVQ--GGKF 203 (236)
T ss_dssp TSCEEEEE--TTEE
T ss_pred CCcEEEEe--CCeE
Confidence 88766654 6633
No 344
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.05 E-value=1.4 Score=46.39 Aligned_cols=187 Identities=11% Similarity=0.076 Sum_probs=96.4
Q ss_pred CCCEEEEEeC----------CeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCceEEEeeCC-----CcEEEEEeec
Q 001295 821 NDSYVMSASG----------GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRV 883 (1106)
Q Consensus 821 ~~~~l~~~sd----------g~i~vwd~~~~~~~~~--~~~~~~~v~~l~~s~~d~~~la~g~~d-----g~v~iwd~~~ 883 (1106)
++++++.|+. ..+.+||..+.+.... +........++.+ ++++++.|+.+ ..+.+||..+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~ 146 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPER 146 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCC
Confidence 6666666542 3588999877553322 2211122222222 67788887754 3688899876
Q ss_pred ceEE--EEecCcccCeeEEEEecCCCEEEEEcCC-----CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCC
Q 001295 884 DEVK--SKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 956 (1106)
Q Consensus 884 ~~~~--~~l~~h~~~V~~l~~s~d~~~l~s~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg 956 (1106)
.+-. ..+......-.++.+ ++++++.|+.+ ..+.+||+.+.+= ..+..... ...-.+++.. ++
T Consensus 147 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W---~~~~~~p~----~r~~~~~~~~-~~ 216 (308)
T 1zgk_A 147 DEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEW---RMITAMNT----IRSGAGVCVL-HN 216 (308)
T ss_dssp TEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE---EECCCCSS----CCBSCEEEEE-TT
T ss_pred CeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeE---eeCCCCCC----ccccceEEEE-CC
Confidence 5422 222211111122222 67777777765 4588888876431 11111110 0111222222 66
Q ss_pred cEEEEE-eC-----CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCceeE
Q 001295 957 IHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1022 (1106)
Q Consensus 957 ~~l~~~-~d-----~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D-----g~i~vwd~~~~~~~ 1022 (1106)
+.++.+ .+ ..+.+||+.+.+-...-........-..+. -++++++.|+.+ ..|.+||..+.+-.
T Consensus 217 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 217 CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred EEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence 666663 32 569999998876443321111111112222 267777777754 35788888877544
No 345
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.99 E-value=5.8 Score=44.22 Aligned_cols=100 Identities=16% Similarity=0.111 Sum_probs=71.0
Q ss_pred CCeeEEEEecCCCEEEEEe--CCeEEEEEcCCCce-------------eeeecCCCCCeeEEEEecCCCceEEEeeCCCc
Q 001295 811 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKT-------------MATFMPPPPAATFLAFHPQDNNIIAIGMDDSS 875 (1106)
Q Consensus 811 ~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~-------------~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~ 875 (1106)
.....+.++|||+++++++ +.++.++|++.... ..... -.-.....+|.+ +|.-..+-.-|.+
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSq 400 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQ 400 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecce
Confidence 3455689999999999998 78999999874211 11122 233467899999 7866677779999
Q ss_pred EEEEEeecc----------eEEEEecCcccCeeEEEE------ecCCCEEEEEc
Q 001295 876 IQIYNVRVD----------EVKSKLKGHSKRITGLAF------SHALNVLVSSG 913 (1106)
Q Consensus 876 v~iwd~~~~----------~~~~~l~~h~~~V~~l~~------s~d~~~l~s~s 913 (1106)
|.-|++... ..+.++.-|-.+ -.+.- .+||++|++..
T Consensus 401 vvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 401 VVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEE
T ss_pred EEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEec
Confidence 999999764 466677666543 22332 47999999974
No 346
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.69 E-value=1.9 Score=45.62 Aligned_cols=193 Identities=9% Similarity=0.021 Sum_probs=96.1
Q ss_pred EEecCCCEEEEEe-C----C-------eEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCceEEEeeCC-------Cc
Q 001295 817 ALSKNDSYVMSAS-G----G-------KISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDD-------SS 875 (1106)
Q Consensus 817 ~~s~~~~~l~~~s-d----g-------~i~vwd~~~~~~~~~--~~~~~~~v~~l~~s~~d~~~la~g~~d-------g~ 875 (1106)
+...++++++.|+ . + .+.+||..+.+.... +....... +++.. ++++++.|+.+ ..
T Consensus 52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~ 128 (318)
T 2woz_A 52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF-GLGEV--DDKIYVVAGKDLQTEASLDS 128 (318)
T ss_dssp EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC-EEEEE--TTEEEEEEEEBTTTCCEEEE
T ss_pred EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc-ceEEE--CCEEEEEcCccCCCCcccce
Confidence 3445777777775 1 1 167788776544322 22111122 22222 56788888764 25
Q ss_pred EEEEEeecceE--EEEecCcccCeeEEEEecCCCEEEEEcCC------CcEEEEeCCCcccccceeecccCCCCCCCCCC
Q 001295 876 IQIYNVRVDEV--KSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD 947 (1106)
Q Consensus 876 v~iwd~~~~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i 947 (1106)
+.+||..+.+- +..+......- +++ ..++++++.|+.+ ..+.+||+.+.+ ...+..... + ..-
T Consensus 129 ~~~yd~~~~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~---W~~~~~~p~--~--r~~ 199 (318)
T 2woz_A 129 VLCYDPVAAKWSEVKNLPIKVYGH-NVI-SHNGMIYCLGGKTDDKKCTNRVFIYNPKKGD---WKDLAPMKT--P--RSM 199 (318)
T ss_dssp EEEEETTTTEEEEECCCSSCEESC-EEE-EETTEEEEECCEESSSCBCCCEEEEETTTTE---EEEECCCSS--C--CBS
T ss_pred EEEEeCCCCCEeECCCCCCccccc-EEE-EECCEEEEEcCCCCCCCccceEEEEcCCCCE---EEECCCCCC--C--ccc
Confidence 78888876542 22222111111 122 2467777777642 358899988743 222211110 0 111
Q ss_pred ceEEEcCCCcEEEEE-eC-----CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC-------------
Q 001295 948 TRVQFHQDQIHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD------------- 1008 (1106)
Q Consensus 948 ~~~~~s~dg~~l~~~-~d-----~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D------------- 1008 (1106)
.+++. -+++.++.+ .+ ..+.+||+.+.+-...-........-..+. -++++++.|+.+
T Consensus 200 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~ 276 (318)
T 2woz_A 200 FGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS--LAGSLYAIGGFAMIQLESKEFAPTE 276 (318)
T ss_dssp CEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE--ETTEEEEECCBCCBC----CCBCCB
T ss_pred ceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE--ECCEEEEECCeeccCCCCceeccce
Confidence 22333 356666663 22 357889988765433211111111112222 356777777654
Q ss_pred -CeEEEEEcCCceeEEe
Q 001295 1009 -ATVCVFSAANLKLRCR 1024 (1106)
Q Consensus 1009 -g~i~vwd~~~~~~~~~ 1024 (1106)
..+.+||..+.+-...
T Consensus 277 ~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 277 VNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp CCCEEEEETTTTEEEEE
T ss_pred eeeEEEEeCCCCEehhh
Confidence 3588889888765544
No 347
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.69 E-value=5.3 Score=42.35 Aligned_cols=114 Identities=15% Similarity=0.111 Sum_probs=66.6
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC---CC
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GS 425 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~ 425 (1106)
.-...+.|+|.|||+ ++++-...|.|++++..+++......+ ..+..........|+|+|| +.
T Consensus 30 gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~-------------~~v~~~g~~GllGia~~Pdf~~~g 95 (347)
T 3das_A 30 GLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEV-------------PGVSPSGEGGLLGIALSPDYASDH 95 (347)
T ss_dssp CCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEEC-------------TTCCCBTTBSEEEEEECTTHHHHC
T ss_pred CCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeeccc-------------CceeecCCCCceeeEeccccccCC
Confidence 557889999999999 566655489999998765543211000 0012334567899999995 34
Q ss_pred EEEEE-e--CCCeEEEEEccCCc----e---eeee-eeec-cccCCeeEEEEcCCCCceEEEEec
Q 001295 426 LFGVA-Y--SRHIVQIYSYHGGD----E---VRQH-LEID-AHVGGVNDIAFSHPNKQLCVITCG 478 (1106)
Q Consensus 426 ~las~-~--~d~~v~iwd~~~~~----~---~~~~-~~l~-~h~~~V~~~~~s~d~~~~~l~s~~ 478 (1106)
+|... + .++.|.-|.+..+. . .+.+ ..+. +....-..|+|.|||. +.++.+
T Consensus 96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~G 158 (347)
T 3das_A 96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGTG 158 (347)
T ss_dssp EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEECB
T ss_pred EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEEC
Confidence 44332 2 44566667665521 1 1111 1121 1122456799999997 555543
No 348
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.99 E-value=3.6 Score=48.99 Aligned_cols=198 Identities=11% Similarity=0.077 Sum_probs=104.8
Q ss_pred cCCCEEEEEe-C----CeEEEEEcCCCceeeee-c-------CCCCCeeEEEEecCCCceEEEeeCCC------cEEEEE
Q 001295 820 KNDSYVMSAS-G----GKISLFNMMTFKTMATF-M-------PPPPAATFLAFHPQDNNIIAIGMDDS------SIQIYN 880 (1106)
Q Consensus 820 ~~~~~l~~~s-d----g~i~vwd~~~~~~~~~~-~-------~~~~~v~~l~~s~~d~~~la~g~~dg------~v~iwd 880 (1106)
.++.+++.|+ + ..+.+||..+.+....- . .....-.++.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 5677777776 2 35889998876543322 1 1112233444432 567888887543 578899
Q ss_pred eecce--EEEEecCcccCeeEEEEecCCCEEEEEcCCC--cEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCC-
Q 001295 881 VRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD- 955 (1106)
Q Consensus 881 ~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d- 955 (1106)
..+.+ .+..+...... .+++...++++++.||.++ .+.+||..+.. +..+............-..+++..+
T Consensus 475 ~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~---W~~~~~~g~~p~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEI---FKDVTPKDEFFQNSLVSAGLEFDPVS 550 (695)
T ss_dssp TTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTE---EEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred CCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCc---eEEccCCCCCCCcccceeEEEEeCCC
Confidence 87743 32222211111 1223324888889888765 68899988743 2222210000000012234666665
Q ss_pred CcEEEEE-e--C-----CeEEEEecCCce------EeeecccCCCCCCeeEEEECCCCCEEEEEEcC--------CeEEE
Q 001295 956 QIHFLVV-H--E-----TQLAIFETTKLE------CVKQWVPRESSAPITHATFSCDSQLVYACFLD--------ATVCV 1013 (1106)
Q Consensus 956 g~~l~~~-~--d-----~~v~i~d~~~~~------~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D--------g~i~v 1013 (1106)
++.++.| . + ..+.+||+.+.. -............-.+++...++++++.|+.+ ..|.+
T Consensus 551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~ 630 (695)
T 2zwa_A 551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIIS 630 (695)
T ss_dssp TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEE
T ss_pred CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEE
Confidence 6666664 3 2 468999998776 11111100001111123333347777777743 45999
Q ss_pred EEcCCceeE
Q 001295 1014 FSAANLKLR 1022 (1106)
Q Consensus 1014 wd~~~~~~~ 1022 (1106)
||..+.+-.
T Consensus 631 yd~~t~~W~ 639 (695)
T 2zwa_A 631 LDPLSETLT 639 (695)
T ss_dssp EETTTTEEE
T ss_pred EECCCCeEE
Confidence 999988765
No 349
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=93.47 E-value=3.1 Score=43.94 Aligned_cols=115 Identities=9% Similarity=0.012 Sum_probs=69.2
Q ss_pred CEEEEEeCCCeEEEEEccCCceeeeeeeeccc-cCCeeEEEE--cCCCCceEEEEe-cCCCcEEEEeCCCCceeEEEec-
Q 001295 425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-VGGVNDIAF--SHPNKQLCVITC-GDDKTIKVWDATNGAKQYIFEG- 499 (1106)
Q Consensus 425 ~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h-~~~V~~~~~--s~d~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~- 499 (1106)
.+++.++.||.|.-.|..+|+..-.. ... ..++....- .+.+.. .++.. +.||.|..+|..+|.....+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~---~~~~~~p~~~~~~~~~~~~~~-~~vv~p~~dG~l~a~~~~~G~~~~~~~~~ 86 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSI---EPENFQPLIEIQEPSRLETYE-TLIIEPFGDGNIYYFNAHQGLQKLPLSIR 86 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEE---CGGGSCCSEECCCSCTTTSSE-EEEECCSTTTEEEEEETTTEEEEEEEEHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEe---cCCccCCcEEecCCccccCCc-EEEEEECCCCEEEEEECCCCcEEeeeccc
Confidence 36778889999999999888866532 211 112221110 011222 34443 6899999999988865544431
Q ss_pred ---cCCCeEEEeccccC-------CceEEEEEecCCeEEEEeCCCCCceeEeeCC
Q 001295 500 ---HEAPVYSVCPHHKE-------NIQFIFSTALDGKIKAWLYDNLGSRVDYEAP 544 (1106)
Q Consensus 500 ---h~~~v~~~~~~~~~-------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 544 (1106)
...++.. .-.|-- .+..+++|+.+|.+...|+.+++.+..+...
T Consensus 87 ~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 87 QLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp HHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred cceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 1122221 000000 3368999999999999999999988877643
No 350
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.38 E-value=6.9 Score=43.61 Aligned_cols=110 Identities=10% Similarity=0.090 Sum_probs=62.1
Q ss_pred cCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCC--CCCCCCceEEEcCC---CcEEEE--Ee----
Q 001295 895 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT--PTAQSDTRVQFHQD---QIHFLV--VH---- 963 (1106)
Q Consensus 895 ~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~d---g~~l~~--~~---- 963 (1106)
...++|+|.|||+++++-...+.|++++..++... ....+..... .....+..++|+|| +.+|.+ +.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~--~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVK--TVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE--EEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe--EEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 35679999999998887655456888876544321 1222211110 11235668999995 444444 22
Q ss_pred --------CCeEEEEecCCc-------eEee-ecccCCCCCCeeEEEECCCCCEEEEEEc
Q 001295 964 --------ETQLAIFETTKL-------ECVK-QWVPRESSAPITHATFSCDSQLVYACFL 1007 (1106)
Q Consensus 964 --------d~~v~i~d~~~~-------~~~~-~~~~~~h~~~v~~l~~s~d~~~l~t~s~ 1007 (1106)
...|.-|+.... +.+. .+.. ........|+|.|||.+.++.+.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-SKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-CSSCCEEEEEECTTSCEEEEECC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC-CCCCCCCeEeECCCCeEEEEECC
Confidence 235666655321 1111 1221 22335789999999987666543
No 351
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=93.20 E-value=9.2 Score=39.78 Aligned_cols=175 Identities=13% Similarity=0.171 Sum_probs=101.7
Q ss_pred EEEecCCCEEEEEe--C-------------CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEee--CCCcEEE
Q 001295 816 FALSKNDSYVMSAS--G-------------GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM--DDSSIQI 878 (1106)
Q Consensus 816 l~~s~~~~~l~~~s--d-------------g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~--~dg~v~i 878 (1106)
--++++|.+|.... + ..|+..++...+... +... .+..|++ +++.|+... .++.-.|
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~----~~~~~s~-~g~~Iy~~~~~~~~~~~I 131 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPD----PCIYASL-IGNYIYYLHYDTQTATSL 131 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECS----CEEEEEE-ETTEEEEEEESSSSCEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecC----CccEEEE-eCCEEEEEeecCCCCceE
Confidence 45678999888776 2 247777777654322 2211 2336778 666777665 3444445
Q ss_pred EEeec-ceEEEEecCcccCeeEEEEecCCCEEEEEcC-CCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCC
Q 001295 879 YNVRV-DEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 956 (1106)
Q Consensus 879 wd~~~-~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg 956 (1106)
|.+.. |.....+..+.. .+|+++++.|.-.+. ..+|.+-++..+... .+ ..+. ....+.|++
T Consensus 132 y~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~--~l---~~~~-------~~~~~~P~g 195 (302)
T 3s25_A 132 YRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA--LF---YDCN-------CYKPVVLDD 195 (302)
T ss_dssp EEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE--EE---ECSC-------EEEEEEEET
T ss_pred EEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE--EE---eCCC-------ccceeeecC
Confidence 54432 334455554433 456788998887665 567888887765421 12 1221 234567999
Q ss_pred cEEEEEe--C-CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEc--CCeEEEEEcCCc
Q 001295 957 IHFLVVH--E-TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL--DATVCVFSAANL 1019 (1106)
Q Consensus 957 ~~l~~~~--d-~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~--Dg~i~vwd~~~~ 1019 (1106)
.+|+... + ..|..-++...... .+. ...+ ..|+|++++|+-++. .+.|..-+++..
T Consensus 196 ~~iy~t~~~~~~~I~~~~ldG~~~~-~Lt----~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 196 TNVYYMDVNRDNAIVHVNINNPNPV-VLT----EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp TEEEEEEGGGTTEEEEECSSSCCCE-ECS----CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred CEEEEEEcCCCcEEEEEECCCCCeE-EEe----CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 9988742 2 36777777665533 232 2233 347888998876543 356666666543
No 352
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=92.86 E-value=11 Score=39.97 Aligned_cols=167 Identities=11% Similarity=0.131 Sum_probs=92.6
Q ss_pred CCCcEEEEEecCCCeEEEEEe-------------ccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeE
Q 001295 350 GSSPMSMDFHPVQQTLLLVGT-------------NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN 416 (1106)
Q Consensus 350 ~~~v~~~~~sp~g~~llatg~-------------~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~ 416 (1106)
......+++.|+|. +.+++ .+|.|.++|.++..... ..+++-... +........
T Consensus 49 ~~G~EDi~~~~~G~--~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~----------~~~~~f~Ph 115 (355)
T 3sre_A 49 DNGSEDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNT----------LDISSFNPH 115 (355)
T ss_dssp CSCCCEEEECTTSE--EEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSS----------CCGGGCCEE
T ss_pred CCCcceeEEcCCCe--EEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCC----------CCcCceeee
Confidence 45677888899886 34443 58899999987432111 112211000 011122445
Q ss_pred EEEEcc--CCC-EEEEE-eC--CCeEEEEEccCCc-eeeeeeeeccc-cCCeeEEEEcCCCCceEEEEec----------
Q 001295 417 RVIWSP--DGS-LFGVA-YS--RHIVQIYSYHGGD-EVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCG---------- 478 (1106)
Q Consensus 417 ~l~~sp--dg~-~las~-~~--d~~v~iwd~~~~~-~~~~~~~l~~h-~~~V~~~~~s~d~~~~~l~s~~---------- 478 (1106)
.+.+.+ +|+ +|.++ .. +.+|.+|+++.+. .......+.+. -...+.+++.++|. +.++..
T Consensus 116 Gi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~--fyvt~~~~ftd~~~~~ 193 (355)
T 3sre_A 116 GISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH--FYATNDHYFIDPYLKS 193 (355)
T ss_dssp EEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE--EEEEESCSCSSHHHHH
T ss_pred eeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC--EEecCCcEeCCccccc
Confidence 566554 454 44444 22 5678898887542 23333344432 23578999999998 566654
Q ss_pred -------CCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCC
Q 001295 479 -------DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL 535 (1106)
Q Consensus 479 -------~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 535 (1106)
..+.|..+|. ++ +..+...-...+.++|+++.. .+.++-+..+.|..|+++..
T Consensus 194 ~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~-~lYvadt~~~~I~~~~~~~~ 253 (355)
T 3sre_A 194 WEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGK-YVYIAELLAHKIHVYEKHAN 253 (355)
T ss_dssp HHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSS-EEEEEEGGGTEEEEEEECTT
T ss_pred chhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCC-EEEEEeCCCCeEEEEEECCC
Confidence 1244555553 33 333333345678899866542 34445556889999998743
No 353
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=92.83 E-value=13 Score=40.51 Aligned_cols=259 Identities=9% Similarity=0.033 Sum_probs=119.0
Q ss_pred CCCeeEEEEec--CCCEEEEEeCC----eEEEEEcCCCceeeeec------C--------CCCCeeEEEEecCC-CceEE
Q 001295 810 EEAVPCFALSK--NDSYVMSASGG----KISLFNMMTFKTMATFM------P--------PPPAATFLAFHPQD-NNIIA 868 (1106)
Q Consensus 810 ~~~v~~l~~s~--~~~~l~~~sdg----~i~vwd~~~~~~~~~~~------~--------~~~~v~~l~~s~~d-~~~la 868 (1106)
...|.+|+++| ++.+.+.+..| .|...+ ..++.-..+. . ....|.++++.|.+ ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45689999998 55566655554 343332 2222211111 1 11247789998633 44555
Q ss_pred EeeCCCcEEEEEeecceEEEEec---C----------------cccCeeEEEEecC-CCEEEEEcCCCcEEEEeCCCccc
Q 001295 869 IGMDDSSIQIYNVRVDEVKSKLK---G----------------HSKRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEK 928 (1106)
Q Consensus 869 ~g~~dg~v~iwd~~~~~~~~~l~---~----------------h~~~V~~l~~s~d-~~~l~s~s~Dg~i~vwd~~~~~~ 928 (1106)
++...+.|...+ ..|+.-..+. . ....|.+|.+.|. ...|..+..++.|...+ +.++
T Consensus 133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~- 209 (394)
T 3b7f_A 133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGT- 209 (394)
T ss_dssp EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTS-
T ss_pred EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCC-
Confidence 555556554432 2222222221 1 1235788999873 34444444444344332 2221
Q ss_pred ccceeecc-cCC-CCC-----CCCCCceEEEcCC-CcEEEEEeCCeEEEEecCCceEeeecccCCCC---CCeeEEEECC
Q 001295 929 QKNRFLQI-PTG-RTP-----TAQSDTRVQFHQD-QIHFLVVHETQLAIFETTKLECVKQWVPRESS---APITHATFSC 997 (1106)
Q Consensus 929 ~~~~~~~~-~~~-~~~-----~~~~i~~~~~s~d-g~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~---~~v~~l~~s~ 997 (1106)
....+.. ... ..+ ....+..+++.|+ ...|.++..+.|...+-. ++.-..+...-.. ..+.+++++|
T Consensus 210 -tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~~p 287 (394)
T 3b7f_A 210 -DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDRR-EGVWKRIGDAMPREVGDIGFPIVVHQ 287 (394)
T ss_dssp -SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEETT-TTEEECGGGGSCTTTCSCEEEEEECS
T ss_pred -CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCCC-CCcceECCCCCCCCCccceEEEEECC
Confidence 1111111 000 000 0124678899886 355555555666555422 3222222210111 3467888886
Q ss_pred -CCCEEEEEEc-----------CCeEEEEEcCC-ceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcE
Q 001295 998 -DSQLVYACFL-----------DATVCVFSAAN-LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGV 1064 (1106)
Q Consensus 998 -d~~~l~t~s~-----------Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v 1064 (1106)
+...|.++.. ++...||...+ |+.-..+. .-+|....-..+....++++|.++..|+.++.++.|
T Consensus 288 ~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l 365 (394)
T 3b7f_A 288 RDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI 365 (394)
T ss_dssp SCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred CCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence 3344444432 33345555443 34333332 112321100001112577887666667777666654
Q ss_pred EEEeecCCCCccCC
Q 001295 1065 HVFEPLESEGKWGV 1078 (1106)
Q Consensus 1065 ~vW~~~~~~~~~~~ 1078 (1106)
|.-.++..+|..
T Consensus 366 --~~S~D~G~tW~~ 377 (394)
T 3b7f_A 366 --WASADEGEHWQC 377 (394)
T ss_dssp --EEESSTTSBCEE
T ss_pred --EEECCCCCCceE
Confidence 555555556654
No 354
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.03 E-value=7.9 Score=39.83 Aligned_cols=222 Identities=13% Similarity=0.059 Sum_probs=114.2
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEec
Q 001295 812 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 891 (1106)
Q Consensus 812 ~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~ 891 (1106)
.|..++....- .++.. ||.|..|-......+..-......|..++... ...++. . ||.|+.|-....-.+..-.
T Consensus 25 ~i~~ia~G~~h-~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSE-EEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCe-EEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 56677765433 33333 88999997654322221111223577777753 445555 4 9999999865421111111
Q ss_pred CcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEe
Q 001295 892 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE 971 (1106)
Q Consensus 892 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d 971 (1106)
.-...|..++...+. .+... ||.|..|-.....+... .... ...|..++...+...+ .. ++.|..|-
T Consensus 99 ~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg~-~~~~-------~~~i~~i~~G~~~~~~-l~-~G~v~~wG 165 (282)
T 3qhy_B 99 EARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTTV-PAEA-------QSGVTALDGGVYTALA-VK-NGGVIAWG 165 (282)
T ss_dssp GGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTSC-CGGG-------GSSEEEEEECSSEEEE-EE-TTEEEEEE
T ss_pred ccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCCC-CccC-------CCCeEEEEcccCEEEE-EE-CCEEEEec
Confidence 113467777776443 33334 89999997654322110 0000 1234455444333322 23 89999997
Q ss_pred cCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCC
Q 001295 972 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1051 (1106)
Q Consensus 972 ~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d 1051 (1106)
......+..-. .-...|..|+...+.. ++. .||.|+.|=....-.+. .|.. ....+. .++-..
T Consensus 166 ~n~~gqlg~p~--~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg-------~p~~-~~~~v~--~i~~G~-- 228 (282)
T 3qhy_B 166 DNYFGQTTVPA--EAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTT-------VPTE-ALSGVS--AIASGE-- 228 (282)
T ss_dssp CCTTSTTSCCG--GGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTC-------CCGG-GGSSCC--EEEECS--
T ss_pred CCCCCCCCCce--ecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCC-------CCcc-cCCCce--EEEcCC--
Confidence 65432221111 1135688887654433 333 59999999765432221 1100 011133 454432
Q ss_pred CCEEEEEeCCCcEEEEeecC
Q 001295 1052 PNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus 1052 ~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
...++.. ||.|+.|=-..
T Consensus 229 ~h~~al~--~g~v~~wG~n~ 246 (282)
T 3qhy_B 229 WYSLALK--NGKVIAWGSSR 246 (282)
T ss_dssp SCEEEEE--TTEEEEESTTC
T ss_pred CEEEEEE--CCEEEEecCCC
Confidence 3344444 99999997554
No 355
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.43 E-value=17 Score=37.20 Aligned_cols=184 Identities=9% Similarity=0.022 Sum_probs=98.1
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEec
Q 001295 812 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 891 (1106)
Q Consensus 812 ~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~ 891 (1106)
.|..++...+-..++ .||.|..|-......+..-..-...|..++... ...++ -. ||.|+.|-....-.+..-.
T Consensus 64 ~i~~ia~G~~hs~~l--~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~--~hs~a-l~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHSLAL--KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA--WASYA-LK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEEEEE--ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET--TEEEE-EE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEEEEE--ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC--CEEEE-Ee-CCeEEEecCCCCCcCCCCc
Confidence 566676654433333 388888887654322211111124677777754 33344 44 9999999765422111111
Q ss_pred CcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEe
Q 001295 892 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE 971 (1106)
Q Consensus 892 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d 971 (1106)
.....|..++...+.. ++ -. ||.|..|-.....+.. ..... ...|..++...+... +. .++.|..|-
T Consensus 138 ~~~~~i~~i~~G~~~~-~~-l~-~G~v~~wG~n~~gqlg-~p~~~-------~~~v~~i~~G~~hs~-al-~~G~v~~wG 204 (282)
T 3qhy_B 138 EAQSGVTALDGGVYTA-LA-VK-NGGVIAWGDNYFGQTT-VPAEA-------QSGVDDVAGGIFHSL-AL-KDGKVIAWG 204 (282)
T ss_dssp GGGSSEEEEEECSSEE-EE-EE-TTEEEEEECCTTSTTS-CCGGG-------GSSEEEEEECSSEEE-EE-ETTEEEEEE
T ss_pred cCCCCeEEEEcccCEE-EE-EE-CCEEEEecCCCCCCCC-Cceec-------CCCeEEEEecCCEEE-EE-ECCeEEEEE
Confidence 2334577776654332 23 33 7889999765433221 01111 124555555544443 33 799999997
Q ss_pred cCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCc
Q 001295 972 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1019 (1106)
Q Consensus 972 ~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~ 1019 (1106)
......+..-. .....|..|+...+..++++ ||.|+.|=....
T Consensus 205 ~n~~gqlg~p~--~~~~~v~~i~~G~~h~~al~---~g~v~~wG~n~~ 247 (282)
T 3qhy_B 205 DNRYKQTTVPT--EALSGVSAIASGEWYSLALK---NGKVIAWGSSRT 247 (282)
T ss_dssp CCTTSTTCCCG--GGGSSCCEEEECSSCEEEEE---TTEEEEESTTCC
T ss_pred CCCCCCCCCCc--ccCCCceEEEcCCCEEEEEE---CCEEEEecCCCC
Confidence 65432221111 11346778876655444333 999999976553
No 356
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=89.00 E-value=32 Score=38.18 Aligned_cols=115 Identities=14% Similarity=0.159 Sum_probs=61.1
Q ss_pred CCcEEEEEecCCC-eEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccC----CCCcCeEEEEEccC--
Q 001295 351 SSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK----DPGVSVNRVIWSPD-- 423 (1106)
Q Consensus 351 ~~v~~~~~sp~g~-~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~----~h~~~V~~l~~spd-- 423 (1106)
...+.|+|.|||+ +|+++ ...|.|++++.... ... .. +.++. ..... ........|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~-er~G~i~~~~~~g~-~~~-~~--~~~~~-------~~~~~g~~~~~e~Gllgia~~P~f~ 81 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFIL-EKEGYVKILTPEGE-IFK-EP--YLDIH-------KLVQSGIKGGDERGLLSLAFHPNYK 81 (463)
T ss_dssp SSEEEEECCSSSSCCEEEE-ETTTEEEEECTTSC-BCS-SC--SEECT-------TTBCCCCSSSCCCSEEEEEECTTHH
T ss_pred CCceEEEECCCCCeEEEEE-eCCceEEEEeCCCC-eee-ee--ecCCc-------ceeccCccccCCCcceeeEeCCCCc
Confidence 5679999999995 44554 67899999975422 110 00 01111 00111 23567889999996
Q ss_pred --CCEEEEEeC--C----------CeEEEEEccCC--c-----eeeeeeeec--cccCCeeEEEEcCCCCceEEEEecC
Q 001295 424 --GSLFGVAYS--R----------HIVQIYSYHGG--D-----EVRQHLEID--AHVGGVNDIAFSHPNKQLCVITCGD 479 (1106)
Q Consensus 424 --g~~las~~~--d----------~~v~iwd~~~~--~-----~~~~~~~l~--~h~~~V~~~~~s~d~~~~~l~s~~~ 479 (1106)
+.+.++-+. + ..|.-|.+..+ . ..+.+..+. .....-..|+|.|||. +.++.++
T Consensus 82 ~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~--LYv~~Gd 158 (463)
T 2wg3_C 82 KNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF--LYIILGD 158 (463)
T ss_dssp HHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC--EEEEECC
T ss_pred CCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc--EEEEeCC
Confidence 444444332 1 14555666432 1 111121221 2223468999999997 4444443
No 357
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=87.48 E-value=23 Score=42.04 Aligned_cols=198 Identities=10% Similarity=0.056 Sum_probs=102.2
Q ss_pred CCceEEEeeCC----CcEEEEEeecceEEEEe-c-----CcccCe-eEEEEec-CCCEEEEEcCCC------cEEEEeCC
Q 001295 863 DNNIIAIGMDD----SSIQIYNVRVDEVKSKL-K-----GHSKRI-TGLAFSH-ALNVLVSSGADS------QLCVWSSD 924 (1106)
Q Consensus 863 d~~~la~g~~d----g~v~iwd~~~~~~~~~l-~-----~h~~~V-~~l~~s~-d~~~l~s~s~Dg------~i~vwd~~ 924 (1106)
++.+++.|+.+ ..+.+||..+++-...- . ...... .+++..+ ++++++.||.++ .+.+||..
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 66777778754 36888998775432211 1 111111 2233333 777888887543 47788887
Q ss_pred CcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCC--eEEEEecCCceEeeecc---cCCCCCCeeEEEECCC
Q 001295 925 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET--QLAIFETTKLECVKQWV---PRESSAPITHATFSCD 998 (1106)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~--~v~i~d~~~~~~~~~~~---~~~h~~~v~~l~~s~d 998 (1106)
+.+ +..+.... ....-.+++.-.+++.++.| .++ .+.+||..+..-...-. .......-.++.+..+
T Consensus 477 t~~---W~~~~~~p----~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 477 TRE---WSMIKSLS----HTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp TTE---EEECCCCS----BCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred CCc---EEECCCCC----CCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 732 11111111 01122334443477777773 322 79999998876433221 0001112233555554
Q ss_pred -CCEEEEEEc--C-----CeEEEEEcCCcee-----EEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCC----
Q 001295 999 -SQLVYACFL--D-----ATVCVFSAANLKL-----RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD---- 1061 (1106)
Q Consensus 999 -~~~l~t~s~--D-----g~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~D---- 1061 (1106)
+++++.|+. + ..+.+||+.+..- -..+......+.. . . .+.... ++++++.|+.+
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~--~---~--~~~~~~-~~~iyv~GG~~~~~~ 621 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRY--G---S--QIKYIT-PRKLLIVGGTSPSGL 621 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCB--S---C--EEEEEE-TTEEEEECCBCSSCC
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcc--c---c--eEEEeC-CCEEEEECCccCCCC
Confidence 667777765 2 3589999988772 1122110001111 0 1 233332 36788888753
Q ss_pred ----CcEEEEeecCCCCccC
Q 001295 1062 ----GGVHVFEPLESEGKWG 1077 (1106)
Q Consensus 1062 ----g~v~vW~~~~~~~~~~ 1077 (1106)
..+.++|+.+.+ |.
T Consensus 622 ~~~~~~v~~yd~~t~~--W~ 639 (695)
T 2zwa_A 622 FDRTNSIISLDPLSET--LT 639 (695)
T ss_dssp CCTTTSEEEEETTTTE--EE
T ss_pred CCCCCeEEEEECCCCe--EE
Confidence 458888887755 55
No 358
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=86.22 E-value=39 Score=36.12 Aligned_cols=156 Identities=8% Similarity=0.081 Sum_probs=85.0
Q ss_pred CeEEEEEcCCC--ceeeeecCC------CCCeeEEEEe---cC---CCceEEEee-CCCcEEEEEeecceEEEEecCccc
Q 001295 831 GKISLFNMMTF--KTMATFMPP------PPAATFLAFH---PQ---DNNIIAIGM-DDSSIQIYNVRVDEVKSKLKGHSK 895 (1106)
Q Consensus 831 g~i~vwd~~~~--~~~~~~~~~------~~~v~~l~~s---~~---d~~~la~g~-~dg~v~iwd~~~~~~~~~l~~h~~ 895 (1106)
-+|.+||+.+. +.++++.-. ...+..+++. |. ++.++..+. ..+.|.|||+.+++..+.+..+
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~-- 200 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT-- 200 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG--
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC--
Confidence 35677788777 776665321 2347778887 21 133444443 4678999999999877665321
Q ss_pred CeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCC----CcEEEEEeCCeEEEEe
Q 001295 896 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD----QIHFLVVHETQLAIFE 971 (1106)
Q Consensus 896 ~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d----g~~l~~~~d~~v~i~d 971 (1106)
|.|+.....+. +|.-.-|. ..+..+++||+ ++.|....-..-++|.
T Consensus 201 ------~~pd~~~~~~i--~G~~~~~~----------------------~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~ 250 (381)
T 3q6k_A 201 ------FKAERPTKFDY--GGKEYEFK----------------------AGIFGITLGDRDSEGNRPAYYLAGSAIKVYS 250 (381)
T ss_dssp ------GSCCSCEEEEE--TTEEEEEC----------------------CCEEEEEECCCCTTSCCEEEEEESSCSEEEE
T ss_pred ------CccccCcceEE--CCEEeEec----------------------cCceEEEecCCcCCCCeEEEEEECCCCcEEE
Confidence 23441111111 22211121 14678888887 7777764333333443
Q ss_pred cCCc--------eEeeecccCCCCCCeeEEEEC-CCCCEEEEEEcCCeEEEEEcCC
Q 001295 972 TTKL--------ECVKQWVPRESSAPITHATFS-CDSQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus 972 ~~~~--------~~~~~~~~~~h~~~v~~l~~s-~d~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
+.+. ..+..+-..+-...-..+++. .+|.+.++--....|..|+..+
T Consensus 251 V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 251 VNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 3221 112222111111233456675 5777777777788899999875
No 359
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=83.20 E-value=17 Score=40.31 Aligned_cols=113 Identities=11% Similarity=0.053 Sum_probs=61.4
Q ss_pred cCeeEEEEecCCC-EEEEEcCCCcEEEEeCCCcccccceeecccCCCC-----CCCCCCceEEEcCC----CcEEEE-Ee
Q 001295 895 KRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT-----PTAQSDTRVQFHQD----QIHFLV-VH 963 (1106)
Q Consensus 895 ~~V~~l~~s~d~~-~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~s~d----g~~l~~-~~ 963 (1106)
..-+.|+|.|||. .|+.+...|.|++++..... ....+..+..... ........++|+|+ +.+.++ +.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~-~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEI-FKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCB-CSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCe-eeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 3457899999996 44455678999999754321 1111111111100 01235678999997 444443 32
Q ss_pred C------------CeEEEEecCC----------ceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC
Q 001295 964 E------------TQLAIFETTK----------LECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1008 (1106)
Q Consensus 964 d------------~~v~i~d~~~----------~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D 1008 (1106)
+ ..|.-|.+.. .+.+..+...........|+|.|||.+.++.++.
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 1344455532 1233333222223356899999999876666543
No 360
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=81.43 E-value=55 Score=34.18 Aligned_cols=159 Identities=9% Similarity=0.073 Sum_probs=91.7
Q ss_pred CCCCeeEEEEec---CCCEEEEEe-CCeEEEEEcCCCceee-------eecCCCCCeeEEEEecCCCceEEEeeCCCcEE
Q 001295 809 PEEAVPCFALSK---NDSYVMSAS-GGKISLFNMMTFKTMA-------TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQ 877 (1106)
Q Consensus 809 ~~~~v~~l~~s~---~~~~l~~~s-dg~i~vwd~~~~~~~~-------~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~ 877 (1106)
....|.++..-+ +..+++..+ +|.++-..+......+ .+.. ...+..+.... +...|+..+..|.+.
T Consensus 93 ~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~~ 170 (327)
T 3uc1_A 93 PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQSI 170 (327)
T ss_dssp TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEEE
T ss_pred CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeEE
Confidence 345565554433 467788777 8999988876543221 2332 34566665555 456777788899998
Q ss_pred EEEee--c---------ceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCccccc----c-eeecccCCCC
Q 001295 878 IYNVR--V---------DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK----N-RFLQIPTGRT 941 (1106)
Q Consensus 878 iwd~~--~---------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~----~-~~~~~~~~~~ 941 (1106)
.+... . |...-.|. ....|.++...+++..|+.++..|.++.-.+....... . ..+.... ..
T Consensus 171 rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~-~~ 248 (327)
T 3uc1_A 171 RFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDR-RR 248 (327)
T ss_dssp EEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCT-TT
T ss_pred EEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecC-CC
Confidence 88876 3 11112232 34567777776677789999999999988776543211 1 1111111 01
Q ss_pred CCCCCCceEE-EcCCCcEEEEEeCCeEEEEecCC
Q 001295 942 PTAQSDTRVQ-FHQDQIHFLVVHETQLAIFETTK 974 (1106)
Q Consensus 942 ~~~~~i~~~~-~s~dg~~l~~~~d~~v~i~d~~~ 974 (1106)
..+..+. ...+...++++.+|.+.-++...
T Consensus 249 ---d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 249 ---GRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp ---CSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred ---CeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 1233332 33444555557777776666543
No 361
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=81.09 E-value=6.6 Score=48.48 Aligned_cols=81 Identities=15% Similarity=0.088 Sum_probs=51.6
Q ss_pred CCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEE---eCCCcE
Q 001295 988 APITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG---LSDGGV 1064 (1106)
Q Consensus 988 ~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~---~~Dg~v 1064 (1106)
..+.+++..++..+|++-+.|+++|+|++.+++++.........+.. .. .. .....|..+.++.+- ..+|..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~--~~-~~--~~~~~~~~~~~i~v~~s~~~~g~F 310 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPL--QS-FP--YLTSDHTTNSFIALYYPDNSHGSF 310 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCS--CC-CC--CEEECSSSTTEEEEEECCSSSCEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCcc--cc-cc--ccccCCCcccEEEEEEcCCCCcEE
Confidence 46777888889999999999999999999999998876543322221 11 11 122233334443322 245778
Q ss_pred EEEeecCCC
Q 001295 1065 HVFEPLESE 1073 (1106)
Q Consensus 1065 ~vW~~~~~~ 1073 (1106)
++|.+....
T Consensus 311 ~~~~~~~~~ 319 (950)
T 4gq2_M 311 SIYKLNANA 319 (950)
T ss_dssp EEEEEEEC-
T ss_pred EEEEEecCC
Confidence 888775444
No 362
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=77.31 E-value=66 Score=32.64 Aligned_cols=114 Identities=15% Similarity=0.154 Sum_probs=74.2
Q ss_pred CCCCeeEEEEec--CCCEEEEEe-CCeEEEEEcCCCc------eeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEE
Q 001295 809 PEEAVPCFALSK--NDSYVMSAS-GGKISLFNMMTFK------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 879 (1106)
Q Consensus 809 ~~~~v~~l~~s~--~~~~l~~~s-dg~i~vwd~~~~~------~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iw 879 (1106)
....|..+.. + +..+++..+ +|.++-..+.... ....+. ..+.+..+.... +...|+..+..|.++.+
T Consensus 66 ~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~-~~~~ill~T~~G~~~r~ 142 (276)
T 3no0_A 66 REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSV-DETHILLFTKKGRVARF 142 (276)
T ss_dssp TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECC-SSCEEEEEETTSEEEEE
T ss_pred CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeC-CCCEEEEEECCCEEEEE
Confidence 3556666654 4 466777777 8999999876543 111122 234566666655 55577788899999888
Q ss_pred Eeec---------ceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCc
Q 001295 880 NVRV---------DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 926 (1106)
Q Consensus 880 d~~~---------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~ 926 (1106)
.... |.....+.. ...|.++...+++..|+..+..|.++...+...
T Consensus 143 ~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~ 197 (276)
T 3no0_A 143 SVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEEI 197 (276)
T ss_dssp EGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGS
T ss_pred EhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHc
Confidence 7643 212222332 356777666666778999999999998887653
No 363
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=76.32 E-value=1.3e+02 Score=35.48 Aligned_cols=194 Identities=13% Similarity=0.142 Sum_probs=103.8
Q ss_pred EEE-EecCCCEEEEEe--C----CeEEEEEcCCCceeee-ecCCCC--------CeeEEEEecCCCceEEEee-------
Q 001295 815 CFA-LSKNDSYVMSAS--G----GKISLFNMMTFKTMAT-FMPPPP--------AATFLAFHPQDNNIIAIGM------- 871 (1106)
Q Consensus 815 ~l~-~s~~~~~l~~~s--d----g~i~vwd~~~~~~~~~-~~~~~~--------~v~~l~~s~~d~~~la~g~------- 871 (1106)
.+. ++|++++++.+- + ..++++|+.+++.+.. +. ... ....++|.. +..++++..
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d-~~~~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWIN-KDTIIFNLVLHKNEIT 210 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEE-TTEEEECCCCSTTCBC
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEEC-CCEEEEEeCCCCCCcC
Confidence 344 889999888662 2 3599999999887632 22 111 113457764 444544321
Q ss_pred ---CCCcEEEEEeecc--eEEEEecCcccCe-eEEEEecCCC-----EEEEEcCC---CcEEEEeCCCcccccceeeccc
Q 001295 872 ---DDSSIQIYNVRVD--EVKSKLKGHSKRI-TGLAFSHALN-----VLVSSGAD---SQLCVWSSDGWEKQKNRFLQIP 937 (1106)
Q Consensus 872 ---~dg~v~iwd~~~~--~~~~~l~~h~~~V-~~l~~s~d~~-----~l~s~s~D---g~i~vwd~~~~~~~~~~~~~~~ 937 (1106)
....|+.|.+-+. +-...+.+....+ .+...+++++ .+++.+.+ ..+.+.+....... ...+...
T Consensus 211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~ 289 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMP 289 (711)
T ss_dssp TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSC
T ss_pred cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecC
Confidence 1246888877653 1222343333332 3455566766 34544423 33455555431111 1112111
Q ss_pred CCCCCCCCCCceEEEcCCCcEEEEE-----------eCCeEEEEecCCce-------EeeecccCCCCCCeeEEEECCCC
Q 001295 938 TGRTPTAQSDTRVQFHQDQIHFLVV-----------HETQLAIFETTKLE-------CVKQWVPRESSAPITHATFSCDS 999 (1106)
Q Consensus 938 ~~~~~~~~~i~~~~~s~dg~~l~~~-----------~d~~v~i~d~~~~~-------~~~~~~~~~h~~~v~~l~~s~d~ 999 (1106)
. -..+..+.++.+++.. ..+.|.+.|+.+.. ....+........+..+.+..+
T Consensus 290 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 360 (711)
T 4hvt_A 290 S--------DATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD- 360 (711)
T ss_dssp T--------TCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-
T ss_pred C--------cceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-
Confidence 1 1233455677666632 35678899987642 1222222233557888999876
Q ss_pred CEEEEEEcCCe--EEEEEcCCce
Q 001295 1000 QLVYACFLDAT--VCVFSAANLK 1020 (1106)
Q Consensus 1000 ~~l~t~s~Dg~--i~vwd~~~~~ 1020 (1106)
.++++...++. |+++|+.+++
T Consensus 361 ~l~~~~~~~~~~~l~~~~~~~g~ 383 (711)
T 4hvt_A 361 RVFLATYDNVVAKVVTFTLENEQ 383 (711)
T ss_dssp CEEEEEEETTEEEEEEECEETTE
T ss_pred EEEEEEEECCEEEEEEEECCCCc
Confidence 56777777775 6777777765
No 364
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=72.84 E-value=1.1e+02 Score=32.96 Aligned_cols=205 Identities=11% Similarity=0.071 Sum_probs=92.4
Q ss_pred CceEEEeeCCCcEEEEEeec-c---eEEEEecCcccCeeEEEEec--CCCEEEEEcCCC----cEEEEeCCCccccccee
Q 001295 864 NNIIAIGMDDSSIQIYNVRV-D---EVKSKLKGHSKRITGLAFSH--ALNVLVSSGADS----QLCVWSSDGWEKQKNRF 933 (1106)
Q Consensus 864 ~~~la~g~~dg~v~iwd~~~-~---~~~~~l~~h~~~V~~l~~s~--d~~~l~s~s~Dg----~i~vwd~~~~~~~~~~~ 933 (1106)
...|.+|+..| +.+++... + +..... .....|.+|++.| ++.+++.+ ..| .|... .+.++. ...
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~-~~~~~v~~i~~dp~~~~~l~~g~-~~g~~g~gl~~s-~D~G~t--W~~ 95 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPV-FLGHTIHHIVQDPREPERMLMAA-RTGHLGPTVFRS-DDGGGN--WTE 95 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEE-STTSEEEEEEECSSSTTCEEEEE-EC--CCEEEEEE-SSTTSC--CEE
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCcc-CCCCceEEEEECCCCCCeEEEEe-cCCCCCccEEEe-CCCCCC--ceE
Confidence 34566677777 55555432 2 222111 2235699999998 55555544 333 33332 222211 111
Q ss_pred ecccCCCCC--------CCCCCceEEEcC---CCcEEEEEeCCeEEEEecC--CceEeeeccc--------------CCC
Q 001295 934 LQIPTGRTP--------TAQSDTRVQFHQ---DQIHFLVVHETQLAIFETT--KLECVKQWVP--------------RES 986 (1106)
Q Consensus 934 ~~~~~~~~~--------~~~~i~~~~~s~---dg~~l~~~~d~~v~i~d~~--~~~~~~~~~~--------------~~h 986 (1106)
+....+... ....|..+++.| .+..++.+..+.|...+-. +.+.+..... ...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~ 175 (394)
T 3b7f_A 96 ATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPD 175 (394)
T ss_dssp CSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CC
T ss_pred CCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCC
Confidence 111100000 001356788886 4555555566666554322 1222211100 012
Q ss_pred CCCeeEEEECCC-CCEEEEEEcCCeEEEEEcCCceeEEeeCC---CcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCC
Q 001295 987 SAPITHATFSCD-SQLVYACFLDATVCVFSAANLKLRCRINP---SAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG 1062 (1106)
Q Consensus 987 ~~~v~~l~~s~d-~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg 1062 (1106)
...|.+|.+.|. ...|+.+..++.|...+ +.|+.-..+.. ..+++............+.++|.++..|..+...+
T Consensus 176 ~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 176 GPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp CCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred CCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 346889999883 44555555555444432 33333322221 11122110000011237888886667777776544
Q ss_pred cEEEEeecCCCCccCC
Q 001295 1063 GVHVFEPLESEGKWGV 1078 (1106)
Q Consensus 1063 ~v~vW~~~~~~~~~~~ 1078 (1106)
||...++..+|..
T Consensus 255 ---l~~s~D~G~tW~~ 267 (394)
T 3b7f_A 255 ---IYRMDRREGVWKR 267 (394)
T ss_dssp ---EEEEETTTTEEEC
T ss_pred ---EEEeCCCCCcceE
Confidence 4444444445544
No 365
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=71.56 E-value=90 Score=38.40 Aligned_cols=73 Identities=15% Similarity=0.267 Sum_probs=48.2
Q ss_pred ceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCC---CCcCeEEEcc-CCCEEEEE---eCCCcEEEEEcc
Q 001295 568 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL---PASPRIRFNK-DGCLLAVS---TNDNGIKILATS 640 (1106)
Q Consensus 568 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~v~~v~~s~-~~~~l~~~---~~dg~i~iwd~~ 640 (1106)
.+.++...++..++++-+.|+++|+|++.+++++.+....... .........+ .+.++.+- ..+|.+++|.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~~~~~~~~~~~~~~~~i~v~~s~~~~g~F~~~~~~ 316 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPLQSFPYLTSDHTTNSFIALYYPDNSHGSFSIYKLN 316 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCSCCCCCEEECSSSTTEEEEEECCSSSCEEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCccccccccccCCCcccEEEEEEcCCCCcEEEEEEEe
Confidence 5566777888899999999999999999999999887543211 1112233334 34444433 245777888664
No 366
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=66.95 E-value=1.1e+02 Score=30.88 Aligned_cols=196 Identities=4% Similarity=0.009 Sum_probs=102.6
Q ss_pred CeeEE-EEecCCCEEEEEeCCeEEE---EEcCCCceeeeecCCCCCeeEEEEecC-CCceEEEeeCCCcEEEEEeecc--
Q 001295 812 AVPCF-ALSKNDSYVMSASGGKISL---FNMMTFKTMATFMPPPPAATFLAFHPQ-DNNIIAIGMDDSSIQIYNVRVD-- 884 (1106)
Q Consensus 812 ~v~~l-~~s~~~~~l~~~sdg~i~v---wd~~~~~~~~~~~~~~~~v~~l~~s~~-d~~~la~g~~dg~v~iwd~~~~-- 884 (1106)
.+..+ ..+....+++..+.|.++- |++........+. ....|..+.. .+ +..+++..+.+|.|+-..+...
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 34444 3444445555555787554 4443222111132 3456766644 42 4578899999999999987653
Q ss_pred ----eEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCccc----ccc-eeecccCCCCCCCCCCceEEEcCC
Q 001295 885 ----EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK----QKN-RFLQIPTGRTPTAQSDTRVQFHQD 955 (1106)
Q Consensus 885 ----~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~----~~~-~~~~~~~~~~~~~~~i~~~~~s~d 955 (1106)
.....++. .+.+..+........|+..+..|.+..+....-.. ... ..+....+ ..|..+...++
T Consensus 103 ~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~-----d~vv~~~~~~~ 176 (276)
T 3no0_A 103 KAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKN-----DETSGLRIWNG 176 (276)
T ss_dssp CSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTT-----CCEEEEEEESS
T ss_pred hcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCC-----CEEEEEEEeCC
Confidence 22223332 34566666665667888889999888776543211 111 11222111 23444443344
Q ss_pred C-cEEEEEeCCeEEEEecCCce-------EeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEE--EEcCC
Q 001295 956 Q-IHFLVVHETQLAIFETTKLE-------CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV--FSAAN 1018 (1106)
Q Consensus 956 g-~~l~~~~d~~v~i~d~~~~~-------~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~v--wd~~~ 1018 (1106)
+ ..++++..|.++...+.... -+..+. -.+.+..+....+...++..+.+|.+.. ++...
T Consensus 177 ~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~---~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 177 EPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSG---TKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp CSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCC---SSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred CCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEc---CCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 4 44444677777777654322 122221 1334444433333345555666777666 66543
No 367
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=58.40 E-value=30 Score=40.20 Aligned_cols=37 Identities=8% Similarity=0.134 Sum_probs=30.9
Q ss_pred CeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCC
Q 001295 989 PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP 1027 (1106)
Q Consensus 989 ~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~ 1027 (1106)
.|.++.+ +..+|++-+.|.++|+|++.++.++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555555 578999999999999999999998887764
No 368
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=55.04 E-value=79 Score=39.94 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=33.6
Q ss_pred ceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccC
Q 001295 568 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD 607 (1106)
Q Consensus 568 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 607 (1106)
.+.++...++..++++-+.|+++|+|++.+++++.+....
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 4455667788899999999999999999999999887643
No 369
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=51.01 E-value=61 Score=27.88 Aligned_cols=99 Identities=10% Similarity=0.049 Sum_probs=54.1
Q ss_pred HHHhHhcHHHHHHHHHHhhCCCcc-----HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhhHHHHHHHHHHHhCC
Q 001295 14 QFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKH 88 (1106)
Q Consensus 14 q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~ 88 (1106)
.|++..-|.++...+++=-.+..+ ...=.-....|+|++|+..+.+...++... ... |.-+=. -+...+
T Consensus 22 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~a-~~~lg~---~~~~~~ 95 (126)
T 4gco_A 22 EYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF--IKG-YIRKAA---CLVAMR 95 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHH-HHHHHH---HHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh--hHH-HHHHHH---HHHHCC
Confidence 355555688888877664433332 111123456789999988887764443321 111 111112 234568
Q ss_pred CHHHHHHHHHhhcccccccCHHHHHHHHHHh
Q 001295 89 DRAKAVEILVKDLKVFSTFNEELFKEITQLL 119 (1106)
Q Consensus 89 ~~~~A~~~l~~~l~~l~~~~~~~~~~l~~ll 119 (1106)
+.++|+..+++-+.-- ..+++-...|..+|
T Consensus 96 ~~~~A~~~~~~al~l~-P~~~~a~~~l~~~l 125 (126)
T 4gco_A 96 EWSKAQRAYEDALQVD-PSNEEAREGVRNCL 125 (126)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHC-cCCHHHHHHHHHhc
Confidence 8889998888754322 22555555555443
No 370
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=50.95 E-value=12 Score=47.51 Aligned_cols=43 Identities=16% Similarity=0.075 Sum_probs=35.3
Q ss_pred CCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcc
Q 001295 988 APITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1030 (1106)
Q Consensus 988 ~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~ 1030 (1106)
..+.+++..++..+|++-+.|+++|||++.++.++........
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~~~ 280 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQT 280 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECCCS
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechhhc
Confidence 3556667778889999999999999999999999888664433
No 371
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=50.80 E-value=13 Score=29.32 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhHhcHHHHHHHHHHhhCCC
Q 001295 7 ELVFLILQFLDEEKFKETVHKLEQESGFF 35 (1106)
Q Consensus 7 ~~~~li~q~L~~~g~~~s~~~L~~Esg~~ 35 (1106)
-+.-||-.||+-.||+-|..+|+-|+|..
T Consensus 20 Li~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 20 LVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 46789999999999999999999999986
No 372
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=47.98 E-value=4e+02 Score=31.25 Aligned_cols=180 Identities=11% Similarity=0.020 Sum_probs=91.3
Q ss_pred CeEEEEEcCCCc--eeeeecCCCCCe-eEEEEecCCCc-----eEEEeeCC---CcEEEEEeec--ceEEEEecCcccCe
Q 001295 831 GKISLFNMMTFK--TMATFMPPPPAA-TFLAFHPQDNN-----IIAIGMDD---SSIQIYNVRV--DEVKSKLKGHSKRI 897 (1106)
Q Consensus 831 g~i~vwd~~~~~--~~~~~~~~~~~v-~~l~~s~~d~~-----~la~g~~d---g~v~iwd~~~--~~~~~~l~~h~~~V 897 (1106)
.+|+.|.+-+.. -...+.+....+ .....++ +++ .+++.+.+ ..+++.+... ++. ..+.....
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~-- 291 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLL-SDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINMPSD-- 291 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESS-CTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCSCTT--
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEec-CCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeecCCc--
Confidence 458888876542 223344333333 3445556 444 24443322 3556666543 432 23322222
Q ss_pred eEEEEecCCCEEEEEc----------CCCcEEEEeCCCccc-----ccceeecccCCCCCCCCCCceEEEcCCCcEEEEE
Q 001295 898 TGLAFSHALNVLVSSG----------ADSQLCVWSSDGWEK-----QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 962 (1106)
Q Consensus 898 ~~l~~s~d~~~l~s~s----------~Dg~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 962 (1106)
..+..+.++.+++... ..+.|.+.++.++.. ...+.+-.... ...+..+.+..+.-++...
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~l~~~~~ 367 (711)
T 4hvt_A 292 ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTA----NEVFNFISTTKDRVFLATY 367 (711)
T ss_dssp CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCT----TEEEEEEEECSSCEEEEEE
T ss_pred ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCC----CCeEEEEEEECCEEEEEEE
Confidence 1234455666655331 356788899877531 11222111111 1356778888774433335
Q ss_pred eCC--eEEEEecCCce-Eeee-cccCCCCCCeeEEEECCCCCEE-EEEEc---CCeEEEEEcCCce
Q 001295 963 HET--QLAIFETTKLE-CVKQ-WVPRESSAPITHATFSCDSQLV-YACFL---DATVCVFSAANLK 1020 (1106)
Q Consensus 963 ~d~--~v~i~d~~~~~-~~~~-~~~~~h~~~v~~l~~s~d~~~l-~t~s~---Dg~i~vwd~~~~~ 1020 (1106)
.++ .+.++|+.++. .+.. +.... ...+....+++++..+ ++.+. -+.+..+|+. ++
T Consensus 368 ~~~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~ 431 (711)
T 4hvt_A 368 DNVVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HE 431 (711)
T ss_dssp ETTEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SC
T ss_pred ECCEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-Cc
Confidence 565 47788876664 2222 22211 2457777777877654 44332 2678888877 44
No 373
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=45.22 E-value=1.2e+02 Score=25.39 Aligned_cols=90 Identities=8% Similarity=-0.040 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhHhcHHHHHHHHHHhhCCCcc-----HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhhHHHHHHH
Q 001295 7 ELVFLILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1106)
Q Consensus 7 ~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~ 81 (1106)
....+...++...-|.++...+++=.....+ ...-.-....|+|++|+..+.+........ ..+.+.+ =..
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l-a~~- 93 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF--IKGYTRK-AAA- 93 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC--HHHHHHH-HHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc--hHHHHHH-HHH-
Confidence 3445555566666688888888776555443 111223356789999988887664332221 1111111 112
Q ss_pred HHHHhCCCHHHHHHHHHhhcc
Q 001295 82 LEALDKHDRAKAVEILVKDLK 102 (1106)
Q Consensus 82 lEll~~~~~~~A~~~l~~~l~ 102 (1106)
+...++.++|+..+++-+.
T Consensus 94 --~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 --LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp --HHHTTCHHHHHHHHHHHHH
T ss_pred --HHHHhhHHHHHHHHHHHHH
Confidence 2356888899888887543
No 374
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=44.36 E-value=2.9e+02 Score=28.63 Aligned_cols=202 Identities=11% Similarity=0.110 Sum_probs=104.8
Q ss_pred CCeeEEEEecCCC-EEEEEeCCeEEE---EEcCCC------ceeee-ec-CCCCCeeEEEEecC--CCceEEEeeCCCcE
Q 001295 811 EAVPCFALSKNDS-YVMSASGGKISL---FNMMTF------KTMAT-FM-PPPPAATFLAFHPQ--DNNIIAIGMDDSSI 876 (1106)
Q Consensus 811 ~~v~~l~~s~~~~-~l~~~sdg~i~v---wd~~~~------~~~~~-~~-~~~~~v~~l~~s~~--d~~~la~g~~dg~v 876 (1106)
..+..+....... .++..+.|.++- |++... ..+.. +. .....|.++..-++ +..++++.+.+|.|
T Consensus 42 D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~i 121 (327)
T 3uc1_A 42 DIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLV 121 (327)
T ss_dssp GCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEE
Confidence 3444444444444 444555677554 444322 22111 11 12345666544431 46789999999999
Q ss_pred EEEEeecc-------eEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCC--Cc----ccccc-eeecccCCCCC
Q 001295 877 QIYNVRVD-------EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD--GW----EKQKN-RFLQIPTGRTP 942 (1106)
Q Consensus 877 ~iwd~~~~-------~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~--~~----~~~~~-~~~~~~~~~~~ 942 (1106)
+--.+... .....++. .+.+..+........|+..+..|.+..+.+. .- +.... ..+....+
T Consensus 122 Kr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~--- 197 (327)
T 3uc1_A 122 KKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNID--- 197 (327)
T ss_dssp EEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTT---
T ss_pred EEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCC---
Confidence 99887652 22223443 3556666665566788888889988877766 21 11111 11222111
Q ss_pred CCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCce-------EeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEE
Q 001295 943 TAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE-------CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVF 1014 (1106)
Q Consensus 943 ~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~-------~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vw 1014 (1106)
..|..+...+++.+++. +..|.++.-.+.... -+..+....-...+..+....+...++..+.+|.+.-+
T Consensus 198 --d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~ 275 (327)
T 3uc1_A 198 --DRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRT 275 (327)
T ss_dssp --CCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEE
T ss_pred --CEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEE
Confidence 24555554444444444 677877776654322 12222221112334444443344455556677777767
Q ss_pred EcCC
Q 001295 1015 SAAN 1018 (1106)
Q Consensus 1015 d~~~ 1018 (1106)
+...
T Consensus 276 ~~~~ 279 (327)
T 3uc1_A 276 AARQ 279 (327)
T ss_dssp EGGG
T ss_pred ehhh
Confidence 7654
No 375
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=43.49 E-value=2.9e+02 Score=28.38 Aligned_cols=191 Identities=8% Similarity=0.072 Sum_probs=109.5
Q ss_pred cCCCEEEEEe-CCeEEEEEcCCCceee---------eecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecc-----
Q 001295 820 KNDSYVMSAS-GGKISLFNMMTFKTMA---------TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD----- 884 (1106)
Q Consensus 820 ~~~~~l~~~s-dg~i~vwd~~~~~~~~---------~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~----- 884 (1106)
++..++++.+ +|.|+-..+...+... .+. ..+.+..+.... ....++..+..|.++-+....-
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~-~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVN-THDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEEC-CCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 3455667666 7988888766543221 112 233455555544 4556777788998887765421
Q ss_pred ----eEE---EEecCcccCeeEEEEec---CCCEEEEEcCCCcEEEEeCCCcccc---cceeecccCCCCCCCCCCceEE
Q 001295 885 ----EVK---SKLKGHSKRITGLAFSH---ALNVLVSSGADSQLCVWSSDGWEKQ---KNRFLQIPTGRTPTAQSDTRVQ 951 (1106)
Q Consensus 885 ----~~~---~~l~~h~~~V~~l~~s~---d~~~l~s~s~Dg~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~ 951 (1106)
..+ -.+. ....|.++...+ +..+|+.++..|.++.-.+...... ....+....+ ..+..+.
T Consensus 84 ~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~-----d~lv~~~ 157 (312)
T 1suu_A 84 ASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDK-----DFVTSAE 157 (312)
T ss_dssp ----CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTT-----CCEEEEE
T ss_pred cCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCC-----CEEEEEE
Confidence 110 1122 224455554433 4678889999999998887654321 1112222221 2344444
Q ss_pred E-cCCCcEEEEEeCCeEEEEecCCc-------eEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCc
Q 001295 952 F-HQDQIHFLVVHETQLAIFETTKL-------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1019 (1106)
Q Consensus 952 ~-s~dg~~l~~~~d~~v~i~d~~~~-------~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~ 1019 (1106)
. .++...++++.+|.+..+....- .-+..+.... ...|.++..-.++..|++.+..|..+..++...
T Consensus 158 ~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 158 IVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp EECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred EeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 4 44555556688888888876542 2223333322 456777766666677888899999999988654
No 376
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=43.44 E-value=85 Score=32.01 Aligned_cols=83 Identities=17% Similarity=0.125 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhHhc-HHHHHHHHHH--hhCCCc-c--HHHH--HHHHhcCCHHHHHHHhcccccccCccccchhhhHHHH
Q 001295 7 ELVFLILQFLDEEK-FKETVHKLEQ--ESGFFF-N--MKYF--EDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRK 78 (1106)
Q Consensus 7 ~~~~li~q~L~~~g-~~~s~~~L~~--Esg~~~-~--~~~~--~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~ 78 (1106)
+.++++.+++...| +.++.+.|++ +.++.. + .... .-....|++++|+..+.+ +.. ..+ +...-
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~---~~~-~~~l~ 137 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDS---LEC-MAMTV 137 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCS---HHH-HHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCC---HHH-HHHHH
Confidence 45666777777766 7777777766 333322 2 1111 334567777777777766 111 001 11111
Q ss_pred HHHHHHHhCCCHHHHHHHHHhh
Q 001295 79 QKYLEALDKHDRAKAVEILVKD 100 (1106)
Q Consensus 79 q~~lEll~~~~~~~A~~~l~~~ 100 (1106)
+. ++..|+.++|+..|++.
T Consensus 138 ~~---~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 138 QI---LLKLDRLDLARKELKKM 156 (291)
T ss_dssp HH---HHHTTCHHHHHHHHHHH
T ss_pred HH---HHHCCCHHHHHHHHHHH
Confidence 22 23456677777766654
No 377
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=42.88 E-value=54 Score=37.43 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=43.0
Q ss_pred CCceEEEcCCCcEEEEEeC-------------CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEE
Q 001295 946 SDTRVQFHQDQIHFLVVHE-------------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC 1005 (1106)
Q Consensus 946 ~i~~~~~s~dg~~l~~~~d-------------~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~ 1005 (1106)
..-.|+|+|.|.++++-+. ..+.+.+..+++..+.+.. .-..+++.++|+||++.|+..
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~-P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-PIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC-CTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeC-CCCccCcCeeECCCCCEEEEE
Confidence 4577999999996666321 2466777777777665543 236799999999999988765
No 378
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=41.96 E-value=3.1e+02 Score=28.32 Aligned_cols=238 Identities=8% Similarity=0.068 Sum_probs=124.3
Q ss_pred cCCCEEEEEe-CCeEEEEEcCCCce----eeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec---------ce
Q 001295 820 KNDSYVMSAS-GGKISLFNMMTFKT----MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---------DE 885 (1106)
Q Consensus 820 ~~~~~l~~~s-dg~i~vwd~~~~~~----~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~---------~~ 885 (1106)
|+..++++.+ +|.|+--.+...+. -..+. ..+.+..+.... ....|+..+..|.++-+.... |.
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk-e~D~l~~~~~~~-t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMN-TKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccC-CCCEEEEEEEEC-CCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 3455666666 78888776543211 11222 233455554444 455677777889877766532 22
Q ss_pred EEEE---ecCcccCeeEEEEecC---CCEEEEEcCCCcEEEEeCCCccccc----ceeecccCCCCCCCCCCceEEE-cC
Q 001295 886 VKSK---LKGHSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDGWEKQK----NRFLQIPTGRTPTAQSDTRVQF-HQ 954 (1106)
Q Consensus 886 ~~~~---l~~h~~~V~~l~~s~d---~~~l~s~s~Dg~i~vwd~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~-s~ 954 (1106)
.+.. +. ....|.++...++ +.+|+.++.+|.++--.+....... ...+...++ ..+..+.. ..
T Consensus 81 ~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-----d~lv~~~~~~~ 154 (323)
T 1wp5_A 81 HIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-----DQVVDVHLTDG 154 (323)
T ss_dssp EGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-----CCEEEEEEECS
T ss_pred ChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-----CEEEEEEEeCC
Confidence 2211 22 2344665543333 6789999999999998876543221 112222222 23333333 34
Q ss_pred CCcEEEEEeCCeEEEEecCCce-------EeeecccCCCCCCeeEEEECCCCC-EEEEEEcCCeEEEEEcCCceeEEe--
Q 001295 955 DQIHFLVVHETQLAIFETTKLE-------CVKQWVPRESSAPITHATFSCDSQ-LVYACFLDATVCVFSAANLKLRCR-- 1024 (1106)
Q Consensus 955 dg~~l~~~~d~~v~i~d~~~~~-------~~~~~~~~~h~~~v~~l~~s~d~~-~l~t~s~Dg~i~vwd~~~~~~~~~-- 1024 (1106)
+...++.+.+|.+..+....-. -++.+.... ...|.++..-+++. .|++.+..|..+..++.......+
T Consensus 155 ~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~-~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~ 233 (323)
T 1wp5_A 155 MNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKE-GDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAK 233 (323)
T ss_dssp CSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTS
T ss_pred CCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCC-CCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCC
Confidence 4555556888888888764322 222232222 45677765544445 788888899988887764322111
Q ss_pred --eCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecC
Q 001295 1025 --INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus 1025 --~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
+......... ...+ +.+.... +++.++..+.+|.+...++++
T Consensus 234 kGv~~~~~~~~~--~~~l--~~~~~v~-~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 234 RGVVILRELKAN--PHRI--SGFVVAQ-DSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CCEECSCCCSSS--CCCE--EEEEEEC-TTCEEEEEETTSCEEEEEGGG
T ss_pred CCEECeeecCCC--CceE--EEEEEeC-CCCeEEEEeCCCeEEEEEhhh
Confidence 0000011110 1111 1222222 345677777788877666654
No 379
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=41.23 E-value=3.1e+02 Score=28.08 Aligned_cols=236 Identities=9% Similarity=0.058 Sum_probs=122.9
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCceeee---------ecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec-------
Q 001295 821 NDSYVMSAS-GGKISLFNMMTFKTMAT---------FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV------- 883 (1106)
Q Consensus 821 ~~~~l~~~s-dg~i~vwd~~~~~~~~~---------~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~------- 883 (1106)
+..++++.+ +|.|+--.+.+.+..+. +. ..+.+..+.... ....|+..+..|.++-+....
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~-~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVAN-THDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEEC-CCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 445566666 78888776655432221 12 223444444444 455666677888877766532
Q ss_pred --ceEEE---EecCcccCeeEEEEe---cCCCEEEEEcCCCcEEEEeCCCccccc---ceeecccCCCCCCCCCCceEEE
Q 001295 884 --DEVKS---KLKGHSKRITGLAFS---HALNVLVSSGADSQLCVWSSDGWEKQK---NRFLQIPTGRTPTAQSDTRVQF 952 (1106)
Q Consensus 884 --~~~~~---~l~~h~~~V~~l~~s---~d~~~l~s~s~Dg~i~vwd~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~ 952 (1106)
|..+. .+. ....|.++... .++.+++.++.+|.++--.+....... ...+...++ ..+..+..
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-----d~lv~~~~ 153 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-----DELIGVDL 153 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-----CCEEEEEE
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-----CEEEEEEE
Confidence 22221 122 33456665442 356789999999999998776433211 112222222 23333333
Q ss_pred -cCCCcEEEEEeCCeEEEEecCCceE-------eeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEe
Q 001295 953 -HQDQIHFLVVHETQLAIFETTKLEC-------VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCR 1024 (1106)
Q Consensus 953 -s~dg~~l~~~~d~~v~i~d~~~~~~-------~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~ 1024 (1106)
..+...++.+.+|.+..+....-.. +..+... ....|.++....++..|++.+..|.++-.++.......+
T Consensus 154 ~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~R 232 (307)
T 1zi0_A 154 TSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSR 232 (307)
T ss_dssp ECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCT
T ss_pred eCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCC
Confidence 4445555567888887777643221 2222222 246677777666667788889999999887754322111
Q ss_pred ----eCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecC
Q 001295 1025 ----INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus 1025 ----~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
..... +..+ ...+ +.+.... +...++..+.+|.+.-.++.+
T Consensus 233 g~kG~~~~~-~~~~--~~~l--v~~~~v~-~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 233 ATKGVISIK-VTER--NGLV--VGAVQVD-DCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp TSCCEESSC-CCTT--TCSE--EEEEEEC-TTCEEEEEESSCCEEEEEGGG
T ss_pred CCCCEEeeE-ecCC--CCeE--EEEEEeC-CCceEEEEcCCCcEEEEeccc
Confidence 00000 1111 1112 2333333 345666777788877666655
No 380
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=40.99 E-value=63 Score=36.40 Aligned_cols=60 Identities=15% Similarity=0.203 Sum_probs=43.3
Q ss_pred CCceEEEcCCCcEEEEEe-------------CCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEE
Q 001295 946 SDTRVQFHQDQIHFLVVH-------------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF 1006 (1106)
Q Consensus 946 ~i~~~~~s~dg~~l~~~~-------------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s 1006 (1106)
....++|.++|.+.++.+ ...+..++..+++....+.. .....++.++||||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~-P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-PIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEEC-CTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeC-CCCccccCCEECCCCCEEEEEE
Confidence 557899999998877422 12677788877876555431 2245789999999999987664
No 381
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=38.58 E-value=1.3e+02 Score=31.09 Aligned_cols=108 Identities=10% Similarity=0.206 Sum_probs=56.6
Q ss_pred HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhhHHHHHHHHHHHhCCCHHHHHHHHHhh-cccccccCHHHHHHHH
Q 001295 38 MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKD-LKVFSTFNEELFKEIT 116 (1106)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~-l~~l~~~~~~~~~~l~ 116 (1106)
+..|++.|.+|+|-+|.+.+..+. .-++.+++..+|+.+|..- +.-++.-....--.|+
T Consensus 17 l~rl~~~I~~G~yYEAhQ~~Rtl~--------------------~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa 76 (312)
T 2wpv_A 17 LQRFENKIKAGDYYEAHQTLRTIA--------------------NRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLI 76 (312)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH--------------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhccChHHHHHHHHHHH--------------------HHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHH
Confidence 678999999999999999886652 1123345566666666653 2222222333333444
Q ss_pred HHhcccccccchhhccCCCchHHHHHHHHHHHhhhccCCCCcCcCCchhhHhhhHHHHHH
Q 001295 117 QLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSSLNWQHQ 176 (1106)
Q Consensus 117 ~ll~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~rl~~l~~qa~~~q~~ 176 (1106)
.++.- ..... ++.-....+.+|+ +|-+.+++.. + ....++..+++|=..
T Consensus 77 ~llve-v~~~~----~~~~~~~~~~rl~-~l~~~~p~~~----~-~r~~fi~~ai~WS~~ 125 (312)
T 2wpv_A 77 FYLLE-VYDLA----EVKVDDISVARLV-RLIAELDPSE----P-NLKDVITGMNNWSIK 125 (312)
T ss_dssp HHHHH-HHHHT----TCCCSHHHHHHHH-HHHTTCCTTC----T-THHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHc----CCCCCHHHHHHHH-HHHHHCCCCC----c-hHHHHHHHHHHHHhh
Confidence 44431 11111 1112334444444 3333444321 1 356777778877665
No 382
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=37.94 E-value=3.6e+02 Score=27.86 Aligned_cols=150 Identities=7% Similarity=0.015 Sum_probs=80.8
Q ss_pred CCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEE-ecCCCEEEEEeCC
Q 001295 753 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL-SKNDSYVMSASGG 831 (1106)
Q Consensus 753 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~-s~~~~~l~~~sdg 831 (1106)
|+...+++.+.+|.|+--.+..-... +. ....+. ....+..+.. +.....++..+.|
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~------------------~~-~~~~lk---e~D~l~~~~~~~t~d~ll~fT~~G 60 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAAS------------------NG-QDFAMK---DTDRLLAMLEMNTKDVLLLFTNKG 60 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHT------------------TT-CCCCCC---TTCCEEEEEEEETTSEEEEEETTS
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhc------------------Cc-cccccC---CCCEEEEEEEECCCCEEEEEECCC
Confidence 45566888888998886443311000 00 000111 2344444444 4444455555578
Q ss_pred eEEEEEc---CC------Cceeee-ecC-CCCCeeEEEEecC--CCceEEEeeCCCcEEEEEeec--------ceEEEEe
Q 001295 832 KISLFNM---MT------FKTMAT-FMP-PPPAATFLAFHPQ--DNNIIAIGMDDSSIQIYNVRV--------DEVKSKL 890 (1106)
Q Consensus 832 ~i~vwd~---~~------~~~~~~-~~~-~~~~v~~l~~s~~--d~~~la~g~~dg~v~iwd~~~--------~~~~~~l 890 (1106)
.+.-+.. .. |..+.. +.- ....|.++..-++ ++.+++..+.+|.++-..+.. |.....+
T Consensus 61 r~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l 140 (323)
T 1wp5_A 61 NYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINL 140 (323)
T ss_dssp EEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCC
T ss_pred EEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEe
Confidence 7555543 22 221111 111 2334665543331 256788899999999988753 2222233
Q ss_pred cCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCC
Q 001295 891 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 925 (1106)
Q Consensus 891 ~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~ 925 (1106)
... +.+..+....+...|+..+.+|.+..+....
T Consensus 141 ~e~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~e 174 (323)
T 1wp5_A 141 KND-DQVVDVHLTDGMNELFLVTHNGYALWFDESE 174 (323)
T ss_dssp CTT-CCEEEEEEECSCSEEEEEETTSEEEEEEGGG
T ss_pred CCC-CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHH
Confidence 333 5666666655667788888999888887654
No 383
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=37.66 E-value=4e+02 Score=28.29 Aligned_cols=62 Identities=11% Similarity=0.053 Sum_probs=40.8
Q ss_pred eEEEEEccCC--ceeeeeeeecc----ccCCeeEEEEc---CC---CCceEEEEecCCCcEEEEeCCCCceeEEE
Q 001295 435 IVQIYSYHGG--DEVRQHLEIDA----HVGGVNDIAFS---HP---NKQLCVITCGDDKTIKVWDATNGAKQYIF 497 (1106)
Q Consensus 435 ~v~iwd~~~~--~~~~~~~~l~~----h~~~V~~~~~s---~d---~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 497 (1106)
.|.+||+.++ +.++.. .|.. ....+..+++. ++ +.....++-+...-|.|+|+.+++.-+.+
T Consensus 124 kLv~~DL~t~~~~li~~y-~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~ 197 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRY-YFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVT 197 (381)
T ss_dssp EEEEEESSSTTCCEEEEE-ECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eEEEEECCCCCceeEEEE-ECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEc
Confidence 5778888888 666543 2321 23467888887 22 12224566666788999999999877665
No 384
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=36.31 E-value=1.7e+02 Score=23.59 Aligned_cols=102 Identities=9% Similarity=-0.075 Sum_probs=55.0
Q ss_pred HHHHHHHHHhHhcHHHHHHHHHHhhCCCcc-----HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhhHHHHHHHH
Q 001295 8 LVFLILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYL 82 (1106)
Q Consensus 8 ~~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~l 82 (1106)
...+...++....|.++...+++=-....+ ...=.-....|+|++|+..+.+........ ..+.+.+ -.
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~----a~ 80 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW--GKGYSRK----AA 80 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHH----HH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc--HHHHHHH----HH
Confidence 345555666666788888777664333222 111233456799999988887764332221 1111111 11
Q ss_pred HHHhCCCHHHHHHHHHhhcccccccCHHHHHHHH
Q 001295 83 EALDKHDRAKAVEILVKDLKVFSTFNEELFKEIT 116 (1106)
Q Consensus 83 Ell~~~~~~~A~~~l~~~l~~l~~~~~~~~~~l~ 116 (1106)
-+...++..+|+..+++-+.-. ..++.-...+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 113 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQ 113 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 2235788999999888754332 22444444443
No 385
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=35.57 E-value=2e+02 Score=29.10 Aligned_cols=16 Identities=19% Similarity=0.115 Sum_probs=8.4
Q ss_pred HhcCCHHHHHHHhccc
Q 001295 45 VHNGNWDDVEKYLSGF 60 (1106)
Q Consensus 45 i~~g~w~~~~~~l~~~ 60 (1106)
...|++++|+..+.++
T Consensus 141 ~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 141 LKLDRLDLARKELKKM 156 (291)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH
Confidence 3445555555555544
No 386
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=34.66 E-value=4.4e+02 Score=27.94 Aligned_cols=287 Identities=9% Similarity=0.090 Sum_probs=123.8
Q ss_pred CCCccccccCCCceeeEecCCCCCCccc--eecccCc---cccccceEEEEEcCCCceEEEeecCceEEEeeccccccCC
Q 001295 705 DVKPRITEESNDKSKVWKLTELSEPNQC--RSLRLPE---NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNS 779 (1106)
Q Consensus 705 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~--~~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 779 (1106)
..+.++.-..||++..|-.......... .....|. ......|..++. .....++...||.+..|=......--
T Consensus 9 ~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG 86 (389)
T 3kci_A 9 SGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG--GEQTLFAVTADGKLYATGYGAGGRLG 86 (389)
T ss_dssp ------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTS
T ss_pred CcccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCC
Confidence 3455666777889999977654332210 0000000 001123444433 33445666778888888543221100
Q ss_pred CCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCc-----------eeeee
Q 001295 780 SGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK-----------TMATF 847 (1106)
Q Consensus 780 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~-----------~~~~~ 847 (1106)
.+...... ....+.. + ....+..++++......+.-. +|.|..|-....- ....+
T Consensus 87 ~g~~~~~~--------~p~~v~~-~----~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v 153 (389)
T 3kci_A 87 IGGTESVS--------TPTLLES-I----QHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVI 153 (389)
T ss_dssp SSSSCCEE--------EEEECGG-G----TTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEEC
T ss_pred CCCcCCcc--------CCEEccc-c----cCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEe
Confidence 00000000 0000000 0 122344455554444444333 7888888643211 11111
Q ss_pred cC-CCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec-ce----------EEEEecC-cccCeeEEEEecCCCEEEEEcC
Q 001295 848 MP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DE----------VKSKLKG-HSKRITGLAFSHALNVLVSSGA 914 (1106)
Q Consensus 848 ~~-~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~-~~----------~~~~l~~-h~~~V~~l~~s~d~~~l~s~s~ 914 (1106)
.. ....|..|+. +....+.-..||.|+.|-... ++ ....+.. ....|..++........+....
T Consensus 154 ~~l~~~~i~~va~---G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~ 230 (389)
T 3kci_A 154 ESLRGIEVVDVAA---GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTD 230 (389)
T ss_dssp GGGTTSCEEEEEE---CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEET
T ss_pred cccCCCeEEEEEe---CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEcc
Confidence 11 1224656555 445555667899999997533 11 1111111 2235666666443356666778
Q ss_pred CCcEEEEeCCCccccc-------cee--ecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceE--------
Q 001295 915 DSQLCVWSSDGWEKQK-------NRF--LQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC-------- 977 (1106)
Q Consensus 915 Dg~i~vwd~~~~~~~~-------~~~--~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~-------- 977 (1106)
||.|..|-.....+.. ..+ +....+ ..|..++... ...++...++.|..|-......
T Consensus 231 ~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~-----~~v~~v~~G~-~hs~alt~~G~v~~wG~n~~GqLG~g~~~~ 304 (389)
T 3kci_A 231 DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTG-----LGVVKVECGS-QFSVALTKSGAVYTWGKGDYHRLGHGSDDH 304 (389)
T ss_dssp TTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTT-----SCEEEEEEET-TEEEEEETTSCEEEEECCGGGTTCSSSCCC
T ss_pred CCEEEEEeCCCCCCCCCCCCCCccccEEecccCC-----CcEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCCCCCCCCcc
Confidence 9999999654322110 011 111111 1233333222 2233446788888886543111
Q ss_pred ---eeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001295 978 ---VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus 978 ---~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
...+. .-....|..|+.... ..++...||.|+.|=...
T Consensus 305 ~~~P~~v~-~l~~~~v~~ia~G~~--h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 305 VRRPRQVQ-GLQGKKVIAIATGSL--HCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp EEEEEECG-GGTTCCEEEEEECSS--EEEEEETTCCEEEEECCT
T ss_pred ccCCeEec-cCCCCCEEEEEeccC--eEEEECCCCCEEEeeCCC
Confidence 11111 011345667665433 444456899999997653
No 387
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=34.50 E-value=66 Score=36.73 Aligned_cols=58 Identities=17% Similarity=0.267 Sum_probs=41.1
Q ss_pred eeEEEEecCCCceEEEeeCC------------CcEEEEEeecceEEEEecCc-ccCeeEEEEecCCCEEEEE
Q 001295 854 ATFLAFHPQDNNIIAIGMDD------------SSIQIYNVRVDEVKSKLKGH-SKRITGLAFSHALNVLVSS 912 (1106)
Q Consensus 854 v~~l~~s~~d~~~la~g~~d------------g~v~iwd~~~~~~~~~l~~h-~~~V~~l~~s~d~~~l~s~ 912 (1106)
.--|+|+| .|.+++.-..+ ..+.+.+..++++.+-+.++ ..+++.++|+||++.|++.
T Consensus 478 PDNL~fd~-~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECT-TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECC-CCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 45689999 77766654322 23555566677777666665 4689999999999988765
No 388
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=31.74 E-value=1.7e+02 Score=25.75 Aligned_cols=94 Identities=16% Similarity=0.188 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhhCCCcc--HHHH---HHHHhcCCHHHHHHHhcccccccCccccchhhhHHHHHHHHHHHhCCCHHHHHH
Q 001295 21 FKETVHKLEQESGFFFN--MKYF---EDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVE 95 (1106)
Q Consensus 21 ~~~s~~~L~~Esg~~~~--~~~~---~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~A~~ 95 (1106)
+.++.+.+++-.....+ +..| +-....|+|++|+..+.+...++... . -.+..+=..| ...++.++|+.
T Consensus 13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~--~-~a~~~lg~~~---~~~~~~~~A~~ 86 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD--P-KAHRFLGLLY---ELEENTDKAVE 86 (150)
T ss_dssp HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--H-HHHHHHHHHH---HHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--H-HHHHHHHHHH---HHcCchHHHHH
Confidence 44555555554444332 1111 23467899999999998875443331 1 1122222222 35799999999
Q ss_pred HHHhhcccccccCHHHHHHHHHHhcc
Q 001295 96 ILVKDLKVFSTFNEELFKEITQLLTL 121 (1106)
Q Consensus 96 ~l~~~l~~l~~~~~~~~~~l~~ll~~ 121 (1106)
.+++-+.-- ..+++-+..|+.++..
T Consensus 87 ~~~~al~~~-p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 87 CYRRSVELN-PTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 999864322 3367777788876643
No 389
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=31.67 E-value=2.4e+02 Score=32.84 Aligned_cols=30 Identities=20% Similarity=0.509 Sum_probs=26.9
Q ss_pred CCCEEEEEECCCeEEEEECCCcceeEEEcc
Q 001295 577 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 606 (1106)
Q Consensus 577 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 606 (1106)
+..++++-+.|.++|+|++.+++++.....
T Consensus 230 ~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 230 HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 467899999999999999999999888765
No 390
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=31.64 E-value=1.1e+02 Score=34.61 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=42.1
Q ss_pred CeeEEEEecCCCceEEEeeC------------CCcEEEEEeecceEEEEecCc-ccCeeEEEEecCCCEEEEEc
Q 001295 853 AATFLAFHPQDNNIIAIGMD------------DSSIQIYNVRVDEVKSKLKGH-SKRITGLAFSHALNVLVSSG 913 (1106)
Q Consensus 853 ~v~~l~~s~~d~~~la~g~~------------dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~s~d~~~l~s~s 913 (1106)
....|+|++ +|.+.+..+. ...|+.++..++++...+.+. ...++.++|+||++.|.++-
T Consensus 477 sPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 467899999 7776663221 125666676678776666553 46789999999999888763
No 391
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=30.93 E-value=2.7e+02 Score=24.36 Aligned_cols=85 Identities=12% Similarity=-0.012 Sum_probs=44.5
Q ss_pred HHHHHHHhHhcHHHHHHHHHHhhCCCcc-HH----HHHHHHhcCCHHHHHHHhcccccccCccccchhhhHHHHHHHHHH
Q 001295 10 FLILQFLDEEKFKETVHKLEQESGFFFN-MK----YFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEA 84 (1106)
Q Consensus 10 ~li~q~L~~~g~~~s~~~L~~Esg~~~~-~~----~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEl 84 (1106)
.+-..++...-|.++...+++=.....+ .. .=.-....|+|++|+..+.+...++... ....|.+ =.. +
T Consensus 26 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~l-g~~---~ 99 (148)
T 2vgx_A 26 SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE--PRFPFHA-AEC---L 99 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--THHHHHH-HHH---H
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--chHHHHH-HHH---H
Confidence 3344445555577777777654333322 11 1123356788888888777664332221 1122211 112 2
Q ss_pred HhCCCHHHHHHHHHhh
Q 001295 85 LDKHDRAKAVEILVKD 100 (1106)
Q Consensus 85 l~~~~~~~A~~~l~~~ 100 (1106)
+..|+.++|+..+++-
T Consensus 100 ~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 100 LQXGELAEAESGLFLA 115 (148)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 4568888888888764
No 392
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=30.41 E-value=2.7e+02 Score=30.96 Aligned_cols=79 Identities=8% Similarity=0.019 Sum_probs=37.2
Q ss_pred HhHhcHHHHHHHHH--HhhCCCcc----HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhhHHHHHHHHHHHhCCC
Q 001295 16 LDEEKFKETVHKLE--QESGFFFN----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHD 89 (1106)
Q Consensus 16 L~~~g~~~s~~~L~--~Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~ 89 (1106)
.+...+.++...|+ ++.|+..+ -..+..+...|++++|+.++..+.... ......-|...-..| ...|+
T Consensus 116 ~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G--~~Pd~~ty~~Li~~~---~~~g~ 190 (501)
T 4g26_A 116 VAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE--VVPEEPELAALLKVS---MDTKN 190 (501)
T ss_dssp HHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CCCCHHHHHHHHHHH---HHTTC
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHH---hhCCC
Confidence 33333444444443 35566655 223444556666666666666553110 001113333333333 23566
Q ss_pred HHHHHHHHHh
Q 001295 90 RAKAVEILVK 99 (1106)
Q Consensus 90 ~~~A~~~l~~ 99 (1106)
.++|+++|++
T Consensus 191 ~d~A~~ll~~ 200 (501)
T 4g26_A 191 ADKVYKTLQR 200 (501)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666664
No 393
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=30.00 E-value=1.7e+02 Score=29.59 Aligned_cols=104 Identities=13% Similarity=0.117 Sum_probs=55.3
Q ss_pred HHHHHHhHhcHHHHHHHHHHhhCCCcc-----HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhhHHHHHHHHHHH
Q 001295 11 LILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEAL 85 (1106)
Q Consensus 11 li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll 85 (1106)
+-..++....|.++...|++=-....+ ...-+-++..|++++|+..+.++...... - ....-..-++++
T Consensus 123 ~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-----~-~~~~~~~~~~l~ 196 (287)
T 3qou_A 123 QAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-----T-RYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-----H-HHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-----h-HHHHHHHHHHHH
Confidence 334445555577776666654433332 22224456788888888888877433221 1 112222334455
Q ss_pred hCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcc
Q 001295 86 DKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTL 121 (1106)
Q Consensus 86 ~~~~~~~A~~~l~~~l~~l~~~~~~~~~~l~~ll~~ 121 (1106)
..++..+|+..|++.+.-- ..+.+-...|+.++..
T Consensus 197 ~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~ 231 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQ 231 (287)
T ss_dssp HHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred hhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHH
Confidence 5566666777777654332 2255555566655543
No 394
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=29.20 E-value=4.8e+02 Score=26.68 Aligned_cols=198 Identities=11% Similarity=0.119 Sum_probs=102.7
Q ss_pred CCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CC
Q 001295 753 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GG 831 (1106)
Q Consensus 753 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg 831 (1106)
++...++..+.+|.|+--.+..-.....+ ..| .....+. ....+..+........++..+ .|
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~-------------~~g-~~~~~lk---e~D~l~~~~~~~~~~~ll~~T~~G 68 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTG-------------GKG-LSSFDLN---DGDEIVIALCVNTHDYLFMISNEG 68 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSS-------------CCC-EECCCCC---TTCCEEEEEEEETTCEEEEEETTS
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccC-------------CCC-ceecccC---CCCEEEEEEEECCCCEEEEEECCC
Confidence 45566888889998886554321100000 001 1111111 234444444444444444444 78
Q ss_pred eEEEEEcCC---------Ccee---eeecCCCCCeeEEEEecC--CCceEEEeeCCCcEEEEEeec-------ceEEEEe
Q 001295 832 KISLFNMMT---------FKTM---ATFMPPPPAATFLAFHPQ--DNNIIAIGMDDSSIQIYNVRV-------DEVKSKL 890 (1106)
Q Consensus 832 ~i~vwd~~~---------~~~~---~~~~~~~~~v~~l~~s~~--d~~~la~g~~dg~v~iwd~~~-------~~~~~~l 890 (1106)
.++-+.... |..+ ..+. ....|.++...++ +..+|+..+.+|.++...+.. |.....+
T Consensus 69 ~~~~~~~~~ip~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L 147 (312)
T 1suu_A 69 KLYLINAYEIKDSSRASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKL 147 (312)
T ss_dssp EEEEEEGGGSCC-------CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCC
T ss_pred eEEEEEHHHCCCCCccCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEec
Confidence 866665431 1111 1122 2334555543321 356788889999999988753 2233334
Q ss_pred cCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCccc-----ccceeecccCCCCCCCCCCceEEEcCCCc-EEEEEeC
Q 001295 891 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK-----QKNRFLQIPTGRTPTAQSDTRVQFHQDQI-HFLVVHE 964 (1106)
Q Consensus 891 ~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~s~dg~-~l~~~~d 964 (1106)
.. .+.+..+....+...|+..+.+|.+..+.+..-.. .....+....+ ..+..+..-.++. .++.+..
T Consensus 148 ~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~-----d~vv~~~~v~~~~~l~~vt~~ 221 (312)
T 1suu_A 148 ND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEG-----DLFVKVLSVKENPYLLIVSEN 221 (312)
T ss_dssp CT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTT-----CCEEEEEECTTCSEEEEEETT
T ss_pred CC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCC-----CEEEEEEEECCCCeEEEEECC
Confidence 44 56677666666667888899999998888754211 11122222221 2344544444444 4444778
Q ss_pred CeEEEEecCC
Q 001295 965 TQLAIFETTK 974 (1106)
Q Consensus 965 ~~v~i~d~~~ 974 (1106)
|......+..
T Consensus 222 G~~kr~~~~e 231 (312)
T 1suu_A 222 GYGKRLNMSK 231 (312)
T ss_dssp SEEEEEEGGG
T ss_pred CceEEEEHHH
Confidence 8888877744
No 395
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=29.08 E-value=1.9e+02 Score=24.08 Aligned_cols=87 Identities=8% Similarity=0.016 Sum_probs=50.3
Q ss_pred HHHHHHHHhHhcHHHHHHHHHHhhCCCcc-----HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhhHHHHHHHHH
Q 001295 9 VFLILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLE 83 (1106)
Q Consensus 9 ~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lE 83 (1106)
..+-..+++..-|.++...+++=-....+ ...=.-....|+|++|+..+.+...++... ....| .+=..
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~-~lg~~--- 81 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF--VRAYI-RKATA--- 81 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH-HHHHH---
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--HHHHH-HHHHH---
Confidence 33444556666688888877765444332 111233457899999999887764443321 11111 11222
Q ss_pred HHhCCCHHHHHHHHHhhc
Q 001295 84 ALDKHDRAKAVEILVKDL 101 (1106)
Q Consensus 84 ll~~~~~~~A~~~l~~~l 101 (1106)
+...++.++|+..+++-+
T Consensus 82 ~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 82 QIAVKEYASALETLDAAR 99 (126)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHH
Confidence 235688999999988753
No 396
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=29.05 E-value=1.7e+02 Score=26.09 Aligned_cols=87 Identities=13% Similarity=-0.005 Sum_probs=46.6
Q ss_pred HHHHHHHHhHhcHHHHHHHHHHhhCCCcc-----HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhhHHHHHHHHH
Q 001295 9 VFLILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLE 83 (1106)
Q Consensus 9 ~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lE 83 (1106)
..+-..+++..-|.++...+++=-.+..+ ...=.-....|+|++|+..+.+...++... ....| .+=..
T Consensus 15 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~-~lg~~--- 88 (164)
T 3sz7_A 15 KSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY--SKAWS-RLGLA--- 88 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH-HHHHH---
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHH-HHHHH---
Confidence 33444455555577777777664443332 111133456788888888777664333221 11111 11122
Q ss_pred HHhCCCHHHHHHHHHhhc
Q 001295 84 ALDKHDRAKAVEILVKDL 101 (1106)
Q Consensus 84 ll~~~~~~~A~~~l~~~l 101 (1106)
+...++.++|+..+++-+
T Consensus 89 ~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHH
Confidence 234688888888887643
No 397
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=29.03 E-value=2.5e+02 Score=23.41 Aligned_cols=79 Identities=8% Similarity=0.087 Sum_probs=39.8
Q ss_pred eEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceE
Q 001295 898 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC 977 (1106)
Q Consensus 898 ~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~ 977 (1106)
..+.+..||.+++... ++ +|...+... ..-..+.+..+|.+++...++...+|...+..
T Consensus 22 ~~L~~q~dGnLvl~~~-~~---vW~snt~~~----------------~~~~~l~l~~dGNLVl~~~~~~~~vW~S~t~~- 80 (111)
T 3mez_A 22 AAFVMQGDCNLVLYNE-AG---GFQSNTHGR----------------GVDCTLRLNNRGQLEIHSANSNTPVWVYPRSV- 80 (111)
T ss_dssp EEEEECTTSCEEEECS-SC---CEECCCTTS----------------CSSCEEEECTTSCEEEECSSCSSCSEEESSSC-
T ss_pred EEEEEccCCeEEEECC-CC---EEECCcccC----------------CcCEEEEEcCCCcEEEEeCCCCEEEEEecccc-
Confidence 4556666776666432 22 776544110 01245677788887766444444466433210
Q ss_pred eeecccCCCCCCeeEEEECCCCCEEEE
Q 001295 978 VKQWVPRESSAPITHATFSCDSQLVYA 1004 (1106)
Q Consensus 978 ~~~~~~~~h~~~v~~l~~s~d~~~l~t 1004 (1106)
........+.+.+||.+++.
T Consensus 81 -------~~~~~~~~l~Lq~dGNlvly 100 (111)
T 3mez_A 81 -------NTVRGNYAATLGPDQHVTIY 100 (111)
T ss_dssp -------CCCSSCCEEEECTTSCEEEE
T ss_pred -------CCCCcCEEEEECCCCeEEEe
Confidence 01122345566666666554
No 398
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=28.86 E-value=1.7e+02 Score=24.81 Aligned_cols=101 Identities=11% Similarity=0.174 Sum_probs=50.7
Q ss_pred HHhHhcHHHHHHHHHHhhCCCcc-HHHH----HHHHhcCCHHHHHHHhcccccccCccccc-hhhhHHHHHHHHHHHhCC
Q 001295 15 FLDEEKFKETVHKLEQESGFFFN-MKYF----EDEVHNGNWDDVEKYLSGFTKVDDNRYSM-KIFFEIRKQKYLEALDKH 88 (1106)
Q Consensus 15 ~L~~~g~~~s~~~L~~Esg~~~~-~~~~----~~~i~~g~w~~~~~~l~~~~~~~~~~~~~-~~~~~i~~q~~lEll~~~ 88 (1106)
+.+..-|.++...+++=-.+..+ ...+ .-....|+|++|+..+.+...+....... ..+-.++-..=.-+...+
T Consensus 18 ~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~ 97 (127)
T 4gcn_A 18 AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQN 97 (127)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcC
Confidence 44444577777777654333332 1111 22466788988888776653222111000 001111111111223568
Q ss_pred CHHHHHHHHHhhcccccccCHHHHHHHHH
Q 001295 89 DRAKAVEILVKDLKVFSTFNEELFKEITQ 117 (1106)
Q Consensus 89 ~~~~A~~~l~~~l~~l~~~~~~~~~~l~~ 117 (1106)
+.++|+..+++-|.-. .+++.+..|..
T Consensus 98 ~~~~A~~~~~kal~~~--~~~~~~~~l~~ 124 (127)
T 4gcn_A 98 DLSLAVQWFHRSLSEF--RDPELVKKVKE 124 (127)
T ss_dssp CHHHHHHHHHHHHHHS--CCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC--cCHHHHHHHHH
Confidence 8888888888765422 25565555543
No 399
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=28.81 E-value=72 Score=31.84 Aligned_cols=67 Identities=10% Similarity=0.090 Sum_probs=48.4
Q ss_pred HHHHHhHhcHHHHHHHHHHhhCCCcc-----HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhhHHHHHHHHHHH
Q 001295 12 ILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEAL 85 (1106)
Q Consensus 12 i~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll 85 (1106)
+-+.|++.-+.++.+.++++-.-... ...|.=..+.|+|+.|++.|+-+..++.. +...-+-|-++|
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~-------~~~~a~~yr~lI 75 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-------YLPGASQLRHLV 75 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-------GHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch-------hhHHHHHHHHHH
Confidence 44667888899999999988776553 66777789999999999999887654433 334444455554
No 400
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=28.13 E-value=6.8e+02 Score=28.08 Aligned_cols=181 Identities=12% Similarity=0.064 Sum_probs=92.1
Q ss_pred CCCCcEEEEEecCCCeEEEEEeccCc----------------------------EEEEecCCcceeEEeeeeeeccCcCC
Q 001295 349 QGSSPMSMDFHPVQQTLLLVGTNVGD----------------------------IGLWEVGSRERLVLRNFKVWDLGACS 400 (1106)
Q Consensus 349 h~~~v~~~~~sp~g~~llatg~~dg~----------------------------i~iwd~~~~~~~~~~~~~~~d~~~~~ 400 (1106)
|-..+....|.-||+.=++..+.+|+ +.|+|=.+|+.+....+..- .
T Consensus 177 ~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~-----r 251 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPA-----R 251 (591)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSC-----C
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCC-----C
Confidence 55677888888888765667766665 77888888877765332100 0
Q ss_pred ccccc-cccCCCCcC--eEEEEEcc-CCCEEEEEe---CCCeEEEEEccCCceeeeeeeeccc-----------cCCeeE
Q 001295 401 MPLQA-ALVKDPGVS--VNRVIWSP-DGSLFGVAY---SRHIVQIYSYHGGDEVRQHLEIDAH-----------VGGVND 462 (1106)
Q Consensus 401 ~~~~~-~~~~~h~~~--V~~l~~sp-dg~~las~~---~d~~v~iwd~~~~~~~~~~~~l~~h-----------~~~V~~ 462 (1106)
..... ---.++... ..++++-- +.-.++.+- ....|..||..+++.... -.+... ......
T Consensus 252 g~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~-W~~d~~~~~~~~~~gqg~h~~~v 330 (591)
T 2zux_A 252 GNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKL-WTLDSSKSGNEAFAGQGNHNLSI 330 (591)
T ss_dssp CCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEE-EEEETTSTTCGGGSSCCCSCCEE
T ss_pred CcccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEE-EEecCCCCCcccccccCCCCCee
Confidence 00000 000001000 12222211 111222221 123477777776653221 112110 123445
Q ss_pred EEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEE-eccCCCeEEEeccccCCceEEEEEecCC----eEEEEeCCCCCc
Q 001295 463 IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQFIFSTALDG----KIKAWLYDNLGS 537 (1106)
Q Consensus 463 ~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~ 537 (1106)
..+.-||+. -|+.|+. ++| .+|+.+... .+|...+....|.|+..|..++.+..++ -..+.|..+++.
T Consensus 331 aDVDgDG~d-EIv~Gs~-----~iD-~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~v 403 (591)
T 2zux_A 331 ADVDGDGKD-EIIFGSM-----AVD-HDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKI 403 (591)
T ss_dssp ECCSSSSSC-EEEETTE-----EEC-TTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCE
T ss_pred EeCCCCCCc-eEEEeee-----EEC-CCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcE
Confidence 556677776 4555542 333 344444433 2788888777787776666777776652 244567777666
Q ss_pred eeEee
Q 001295 538 RVDYE 542 (1106)
Q Consensus 538 ~~~~~ 542 (1106)
+....
T Consensus 404 lw~~~ 408 (591)
T 2zux_A 404 LWGVY 408 (591)
T ss_dssp EEEEC
T ss_pred EEEcC
Confidence 65543
No 401
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=27.74 E-value=19 Score=28.72 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=16.6
Q ss_pred CcchhHHHHHHHHHHHhHh
Q 001295 1 MSSLSRELVFLILQFLDEE 19 (1106)
Q Consensus 1 ~~~~~~~~~~li~q~L~~~ 19 (1106)
|+..++++...|+|||++.
T Consensus 15 ~~~skKrLA~sIIdFL~~s 33 (92)
T 4asv_A 15 MSASKEEIAALIVNYFSSI 33 (92)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHh
Confidence 6677899999999999876
No 402
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=27.71 E-value=6.9e+02 Score=28.02 Aligned_cols=42 Identities=17% Similarity=0.141 Sum_probs=28.9
Q ss_pred ccCCeeEEEEcCCCCceEEEEecCCCc----------------------------EEEEeCCCCceeEEEe
Q 001295 456 HVGGVNDIAFSHPNKQLCVITCGDDKT----------------------------IKVWDATNGAKQYIFE 498 (1106)
Q Consensus 456 h~~~V~~~~~s~d~~~~~l~s~~~d~~----------------------------i~iwd~~~~~~~~~~~ 498 (1106)
|...+....|.-||+. -++....+++ +.|+|=.+|+.+.+..
T Consensus 177 ~yt~~~V~DlDGDGka-EIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~ 246 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKA-EVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTAN 246 (591)
T ss_dssp TSCCCEEECSSSSSSC-EEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEE
T ss_pred ccCceeEEEcCCCCcc-eEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEeccc
Confidence 5666777788888876 3444444444 7888877888877654
No 403
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=27.12 E-value=3e+02 Score=23.63 Aligned_cols=84 Identities=12% Similarity=-0.022 Sum_probs=37.2
Q ss_pred HHHHHHhHhcHHHHHHHHHHhhCCCcc-H----HHHHHHHhcCCHHHHHHHhcccccccCccccchhhhHHHHHHHHHHH
Q 001295 11 LILQFLDEEKFKETVHKLEQESGFFFN-M----KYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEAL 85 (1106)
Q Consensus 11 li~q~L~~~g~~~s~~~L~~Esg~~~~-~----~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll 85 (1106)
+-..++...-|.++...+++=.....+ . ..=.-....|+|++|+..+.+...++... ....|. +=.. ++
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~-lg~~---~~ 97 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE--PRFPFH-AAEC---HL 97 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--THHHHH-HHHH---HH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--cHHHHH-HHHH---HH
Confidence 333444444566666665543332222 1 11122345677777766665553322211 001111 1111 23
Q ss_pred hCCCHHHHHHHHHhh
Q 001295 86 DKHDRAKAVEILVKD 100 (1106)
Q Consensus 86 ~~~~~~~A~~~l~~~ 100 (1106)
..|+.++|+..+++-
T Consensus 98 ~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 98 QLGDLDGAESGFYSA 112 (142)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 456677777666653
No 404
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=27.06 E-value=2.5e+02 Score=22.72 Aligned_cols=100 Identities=15% Similarity=0.234 Sum_probs=51.0
Q ss_pred HHHHHHhHhcHHHHHHHHHHhhCCCcc-----HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhhHHHHHHHHHHH
Q 001295 11 LILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEAL 85 (1106)
Q Consensus 11 li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll 85 (1106)
+..-++...-|.++...+++=.....+ ...-.-....|++++|+..+.+........ ....+.+ -.. +.
T Consensus 15 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l-a~~---~~ 88 (125)
T 1na0_A 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWYNL-GNA---YY 88 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH-HHH---HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc--HHHHHHH-HHH---HH
Confidence 334445555577777766654332221 222234467789999988887664332211 1111111 111 23
Q ss_pred hCCCHHHHHHHHHhhcccccccCHHHHHHHHH
Q 001295 86 DKHDRAKAVEILVKDLKVFSTFNEELFKEITQ 117 (1106)
Q Consensus 86 ~~~~~~~A~~~l~~~l~~l~~~~~~~~~~l~~ 117 (1106)
..++.++|+..+++.+.-. ..+++-...|..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 119 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 119 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 5688888988888654322 224444444433
No 405
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.43 E-value=3e+02 Score=23.36 Aligned_cols=104 Identities=13% Similarity=0.048 Sum_probs=54.3
Q ss_pred HHHHHHHHHhHhcHHHHHHHHHHhhCCCcc--------HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhhHHHHH
Q 001295 8 LVFLILQFLDEEKFKETVHKLEQESGFFFN--------MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQ 79 (1106)
Q Consensus 8 ~~~li~q~L~~~g~~~s~~~L~~Esg~~~~--------~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q 79 (1106)
...+-..++...-|.++...+++=-....+ ...=.-....|+|++|+..+.+........ ..+.+.+ =.
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~-a~ 107 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD--VKALYRR-SQ 107 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC--HHHHHHH-HH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC--HHHHHHH-HH
Confidence 444555566666688888777765554433 111123466788888888776653332221 1111111 11
Q ss_pred HHHHHHhCCCHHHHHHHHHhhcccccccCHHHHHHHHHH
Q 001295 80 KYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQL 118 (1106)
Q Consensus 80 ~~lEll~~~~~~~A~~~l~~~l~~l~~~~~~~~~~l~~l 118 (1106)
. +...++.++|+..+++-+.-. ..+++-...+..+
T Consensus 108 ~---~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (148)
T 2dba_A 108 A---LEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRNI 142 (148)
T ss_dssp H---HHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred H---HHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHH
Confidence 1 234578888888888654322 2244444444433
No 406
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=26.42 E-value=6.2e+02 Score=29.64 Aligned_cols=14 Identities=7% Similarity=0.038 Sum_probs=7.2
Q ss_pred CCCHHHHHHHHHhh
Q 001295 87 KHDRAKAVEILVKD 100 (1106)
Q Consensus 87 ~~~~~~A~~~l~~~ 100 (1106)
.|+.++|+..+++-
T Consensus 124 ~g~~~eAi~~~~~A 137 (723)
T 4gyw_A 124 SGNIPEAIASYRTA 137 (723)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 45555555555543
No 407
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=26.21 E-value=6e+02 Score=26.84 Aligned_cols=199 Identities=11% Similarity=0.143 Sum_probs=91.9
Q ss_pred CCEEEEEeCCCeEEEEEccCCce--------eeeeeeecc-ccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC-Cc-
Q 001295 424 GSLFGVAYSRHIVQIYSYHGGDE--------VRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GA- 492 (1106)
Q Consensus 424 g~~las~~~d~~v~iwd~~~~~~--------~~~~~~l~~-h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~- 492 (1106)
....+.-..||.|..|-....-. ......+.. ....+..++.+.-.. ..+.-..||.|+.|-... ++
T Consensus 62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~--h~~al~~~G~v~~wG~n~~GqL 139 (389)
T 3kci_A 62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGK--HCLALSSEGEVYSWGEAEDGKL 139 (389)
T ss_dssp TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCS--EEEEEETTSCEEEEECCGGGTT
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCC--eEEEEcCCCCEEEEeCCCCCcC
Confidence 44555566788888886542111 111111111 122344556655444 455566789999995432 11
Q ss_pred ---------eeEEEecc-CCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEE
Q 001295 493 ---------KQYIFEGH-EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 562 (1106)
Q Consensus 493 ---------~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~ 562 (1106)
....+... ...|..++. .. ...+....||.|..|-.....++-.-. ..... .| ..+.
T Consensus 140 G~g~~~~~~~p~~v~~l~~~~i~~va~---G~-~hs~alt~~G~v~~wG~n~~GqLG~~~--~~~~~----~p---~~v~ 206 (389)
T 3kci_A 140 GHGNRSPCDRPRVIESLRGIEVVDVAA---GG-AHSACVTAAGDLYTWGKGRYGRLGHSD--SEDQL----KP---KLVE 206 (389)
T ss_dssp CSSSCCCEEEEEECGGGTTSCEEEEEE---CS-SEEEEEETTSCEEEEECCGGGTTCSSS--CCCEE----EE---EECG
T ss_pred CCCCCccCcCCeEecccCCCeEEEEEe---Cc-CeEEEEeCCCeEEEeCCCCCCCcCCCC--Ccccc----cc---eEec
Confidence 01111111 124666552 22 345566679999999654322211000 00000 00 0000
Q ss_pred eeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCc-c---------ee-EEEccCCCCCCcCeEEEccCCCEEEEEeCC
Q 001295 563 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV-Q---------LL-TSIDADGGLPASPRIRFNKDGCLLAVSTND 631 (1106)
Q Consensus 563 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~---------~~-~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 631 (1106)
......+..++......+.++...+|.|+.|-.... + .. ..+..... ..|..++ ......+.-..+
T Consensus 207 ~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~-~~v~~v~--~G~~hs~alt~~ 283 (389)
T 3kci_A 207 ALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTG-LGVVKVE--CGSQFSVALTKS 283 (389)
T ss_dssp GGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTT-SCEEEEE--EETTEEEEEETT
T ss_pred ccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCC-CcEEEEe--CCCCEEEEEeCC
Confidence 001112333433333346677788999999965321 1 11 11111111 1233333 334455566788
Q ss_pred CcEEEEEcc
Q 001295 632 NGIKILATS 640 (1106)
Q Consensus 632 g~i~iwd~~ 640 (1106)
|.|+.|-..
T Consensus 284 G~v~~wG~n 292 (389)
T 3kci_A 284 GAVYTWGKG 292 (389)
T ss_dssp SCEEEEECC
T ss_pred CeEEEEeCC
Confidence 999999654
No 408
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=26.10 E-value=2.8e+02 Score=27.78 Aligned_cols=96 Identities=9% Similarity=0.030 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhHhcHHHHHHHHHHhhCCCcc---H----HH---H-HHHHhcCCHHHHHHHhcccccccCccccchhhhH
Q 001295 7 ELVFLILQFLDEEKFKETVHKLEQESGFFFN---M----KY---F-EDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFE 75 (1106)
Q Consensus 7 ~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---~----~~---~-~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~ 75 (1106)
++...+..++....|.++...+++.-..... . .. + .-....|++++|+.++.+................
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4456677788888899988887654332221 1 00 0 1225678999999987654222111111111233
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhhcc
Q 001295 76 IRKQKYLEALDKHDRAKAVEILVKDLK 102 (1106)
Q Consensus 76 i~~q~~lEll~~~~~~~A~~~l~~~l~ 102 (1106)
++-..-.-+...++.++|+..+++-+.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~ 183 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444455678999999999998763
No 409
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=25.57 E-value=40 Score=19.32 Aligned_cols=14 Identities=21% Similarity=0.475 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHhH
Q 001295 5 SRELVFLILQFLDE 18 (1106)
Q Consensus 5 ~~~~~~li~q~L~~ 18 (1106)
-+||++||-||-..
T Consensus 4 MkDvlql~qQy~qs 17 (26)
T 1kdl_A 4 MKDVLRLIEQYVSS 17 (26)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHH
Confidence 36888888888654
No 410
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=24.63 E-value=2e+02 Score=27.27 Aligned_cols=100 Identities=8% Similarity=0.105 Sum_probs=61.9
Q ss_pred cchhhhHHHHHHHHHHHhCCCHHHHHHHHHhhcccccccCHHHHH-HHHHHhcccccccchhhccCCCchHHHHHHHHHH
Q 001295 69 SMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFK-EITQLLTLENFRENEQLSKYGDTKSARSIMLVEL 147 (1106)
Q Consensus 69 ~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~l~~~~~~~~~-~l~~ll~~~~~~~~~~~~~~~~~~~~r~~l~~~l 147 (1106)
...+.-+|.+|..+=-+++++..+|.++|.+.+..- . ++..++ .|..++..++. .+....++ +-..+++++
T Consensus 109 ~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~-~-s~~kLr~kL~~II~~Kd~-~H~~lqnF-----Sy~~~~~ki 180 (235)
T 3bu8_A 109 VESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKD-P-TTQKLRNDLLNIIREKNL-AHPVIQNF-----SYETFQQKM 180 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTC-G-GGHHHHHHHHHHHHHTCT-TSHHHHTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCC-C-CchHHHHHHHHHHhccCc-ccHHHHhc-----cHHHHHHHH
Confidence 334888999999999999999999999999888763 2 334343 66666666543 34443322 344555556
Q ss_pred HhhhccCCCCcCcCCchhhHhhhHHHHHHhccC
Q 001295 148 KKLIEANPLFRDKLQFPNLKNSSLNWQHQLCKN 180 (1106)
Q Consensus 148 ~~~~~~~~~~~~~~rl~~l~~qa~~~q~~~~~~ 180 (1106)
..++......+++ =|+..|.|-+.++|..
T Consensus 181 ~~fve~~~~~a~~----FLL~~A~Kv~ks~~~~ 209 (235)
T 3bu8_A 181 LRFLESHLDDAEP----YLLTMAKKALKSESAA 209 (235)
T ss_dssp HHHHHTTSCCCCC----HHHHHHHHHTTTC---
T ss_pred HHHHHHHhcccch----HHHHHHHHHHhhcccc
Confidence 6665554433333 4555666666665544
No 411
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=23.27 E-value=1.2e+02 Score=24.46 Aligned_cols=53 Identities=8% Similarity=0.113 Sum_probs=33.5
Q ss_pred HHhcCCHHHHHHHhcccccccCccccchhhhHHHHHHHHHHHhCCCHHHHHHHHHhhcc
Q 001295 44 EVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLK 102 (1106)
Q Consensus 44 ~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~ 102 (1106)
....|+|++|+..+.+...+.... . ..|..+=..| ...++.++|+..+++-+.
T Consensus 17 ~~~~g~~~~A~~~~~~al~~~p~~--~-~a~~~lg~~~---~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 17 HLKHDNASRALALFEELVETDPDY--V-GTYYHLGKLY---ERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTC--T-HHHHHHHHHH---HHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCc--H-HHHHHHHHHH---HHcCCHHHHHHHHHHHHh
Confidence 456799999999988775443321 1 1122222333 357999999999987543
No 412
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=21.87 E-value=3e+02 Score=23.05 Aligned_cols=87 Identities=10% Similarity=-0.078 Sum_probs=49.0
Q ss_pred HHHHHHHHhHhcHHHHHHHHHHhhCCCcc-----HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhhHHHHHHHHH
Q 001295 9 VFLILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLE 83 (1106)
Q Consensus 9 ~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lE 83 (1106)
..+-..++....|.++...+++=-....+ ...=.-....|+|++|+..+.+...+.... ..+.+. +=..
T Consensus 13 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~-l~~~--- 86 (137)
T 3q49_B 13 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS--VKAHFF-LGQC--- 86 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHH-HHHH---
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh--HHHHHH-HHHH---
Confidence 44444555566688888777664333332 111233456899999998887764333221 112221 1122
Q ss_pred HHhCCCHHHHHHHHHhhc
Q 001295 84 ALDKHDRAKAVEILVKDL 101 (1106)
Q Consensus 84 ll~~~~~~~A~~~l~~~l 101 (1106)
++..++.++|+..+++-+
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 235688999998888653
No 413
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=21.83 E-value=5.3e+02 Score=25.73 Aligned_cols=103 Identities=9% Similarity=-0.037 Sum_probs=48.3
Q ss_pred HHHHHHHHhHhc--HHHHHHHHHHhhCCCcc-----HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhhHHHHHHH
Q 001295 9 VFLILQFLDEEK--FKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1106)
Q Consensus 9 ~~li~q~L~~~g--~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~ 81 (1106)
...+...+...| |.++...+++-.....+ ...-.-....|++++|+..+.+........ ....+. .-
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~----l~ 166 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC--HLPMLY----IG 166 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC--SHHHHH----HH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc--HHHHHH----HH
Confidence 334444444554 55566666555444332 112233456677777777766553222111 001111 11
Q ss_pred HHHHhCCCHHHHHHHHHhhcccccccCHHHHHHHHHH
Q 001295 82 LEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQL 118 (1106)
Q Consensus 82 lEll~~~~~~~A~~~l~~~l~~l~~~~~~~~~~l~~l 118 (1106)
.-++..++.++|+..+++-+.-. ..+..-+..+..+
T Consensus 167 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~ 202 (330)
T 3hym_B 167 LEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVV 202 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 22234677777877777654332 1234444444433
No 414
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=21.62 E-value=2.2e+02 Score=22.58 Aligned_cols=84 Identities=7% Similarity=-0.038 Sum_probs=38.3
Q ss_pred HHhHhcHHHHHHHHHHhhCCCcc-----HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhhHHHHHHHHHHHhC-C
Q 001295 15 FLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK-H 88 (1106)
Q Consensus 15 ~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~-~ 88 (1106)
++...-|.++...+++=.....+ ...=.-....|+|++|+..+.+........ ....++...-.=+... +
T Consensus 16 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~l~~~~~~~~~ 91 (112)
T 2kck_A 16 QYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE----YNKDVWAAKADALRYIEG 91 (112)
T ss_dssp HHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT----TCHHHHHHHHHHHTTCSS
T ss_pred HHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc----chHHHHHHHHHHHHHHhC
Confidence 34444466666655543222211 111122345677777777776653322110 0011111111222456 6
Q ss_pred CHHHHHHHHHhhcc
Q 001295 89 DRAKAVEILVKDLK 102 (1106)
Q Consensus 89 ~~~~A~~~l~~~l~ 102 (1106)
+.++|+..+++-+.
T Consensus 92 ~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 92 KEVEAEIAEARAKL 105 (112)
T ss_dssp CSHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHhh
Confidence 77777777776543
No 415
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation, transcription; 1.40A {Drosophila melanogaster}
Probab=21.53 E-value=93 Score=23.04 Aligned_cols=31 Identities=13% Similarity=-0.022 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHhHhcHHHHHHHHHHhhCCC
Q 001295 5 SRELVFLILQFLDEEKFKETVHKLEQESGFF 35 (1106)
Q Consensus 5 ~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~ 35 (1106)
|+.+.|||+--|.-=||.+.|..|..+-+..
T Consensus 16 Re~LYrLIISQL~YDG~~~iA~~L~~~v~~~ 46 (66)
T 2xz2_A 16 REILYRLMISQLMYDGLEKFAMELSMLVKAD 46 (66)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhcCCC
Confidence 7789999999999999999999998887753
No 416
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=21.49 E-value=1.8e+02 Score=24.46 Aligned_cols=52 Identities=12% Similarity=-0.160 Sum_probs=24.9
Q ss_pred HHHHHHHhHhcHHHHHHHHHHhhCCCcc-----HHHHHHHHhcCCHHHHHHHhcccc
Q 001295 10 FLILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFT 61 (1106)
Q Consensus 10 ~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~ 61 (1106)
.+-..+++..-|.++...|++=.....+ ...=.-....|++++|+..+.+..
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 78 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR 78 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344445555566666655544433332 111122344566666666665553
No 417
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=21.28 E-value=51 Score=25.99 Aligned_cols=30 Identities=17% Similarity=0.146 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhHhcHHHHHHHHHHhhCCCcc
Q 001295 6 RELVFLILQFLDEEKFKETVHKLEQESGFFFN 37 (1106)
Q Consensus 6 ~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~ 37 (1106)
.++.+-|+++|++.| .++..|.+|-|+.-.
T Consensus 16 ~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~ 45 (82)
T 1oyi_A 16 AEIVCEAIKTIGIEG--ATAAQLTRQLNMEKR 45 (82)
T ss_dssp HHHHHHHHHHHSSST--EEHHHHHHHSSSCHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHCcCHH
Confidence 367788889999999 899999999998764
No 418
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=21.24 E-value=2.2e+02 Score=29.53 Aligned_cols=23 Identities=4% Similarity=0.040 Sum_probs=18.5
Q ss_pred HHHHHHHHhcCCH---HHHHHHhccc
Q 001295 38 MKYFEDEVHNGNW---DDVEKYLSGF 60 (1106)
Q Consensus 38 ~~~~~~~i~~g~w---~~~~~~l~~~ 60 (1106)
+.+|++.|.+|+| -+|.+.+..+
T Consensus 16 i~rl~~~I~~G~y~~~YEAHQ~~RTi 41 (336)
T 3lpz_A 16 IARLQRRIAEGQPEEQYEAAQETRLV 41 (336)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCccccHHHHHHHHH
Confidence 6788888999999 8888877655
No 419
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=20.85 E-value=3.4e+02 Score=22.09 Aligned_cols=94 Identities=7% Similarity=0.043 Sum_probs=50.3
Q ss_pred HHHHHHHHhHhcHHHHHHHHHHhhCCCcc-----HHHHHHHHhcCCHHHHHHHhcccccccCcc-ccchhhhHHHHHHHH
Q 001295 9 VFLILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNR-YSMKIFFEIRKQKYL 82 (1106)
Q Consensus 9 ~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~-~~~~~~~~i~~q~~l 82 (1106)
..+-..++...-|.++...+++=.....+ ...-.-....|+|++|+.++.+........ ........++...=.
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 34444555555678877777654333222 122233456899999999887764322110 000000112222222
Q ss_pred HHHhCCCHHHHHHHHHhhcc
Q 001295 83 EALDKHDRAKAVEILVKDLK 102 (1106)
Q Consensus 83 Ell~~~~~~~A~~~l~~~l~ 102 (1106)
-+...++.++|+..+++-+.
T Consensus 88 ~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHH
Confidence 23467899999999987654
No 420
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=20.64 E-value=1.1e+03 Score=27.86 Aligned_cols=165 Identities=11% Similarity=0.066 Sum_probs=79.1
Q ss_pred CCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCc-------ccCeeEEEEecCC-CEEEEEcCCCc----E
Q 001295 851 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH-------SKRITGLAFSHAL-NVLVSSGADSQ----L 918 (1106)
Q Consensus 851 ~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h-------~~~V~~l~~s~d~-~~l~s~s~Dg~----i 918 (1106)
.+.|.+|+++|.+...+.++...+.|+..+ ..|+.-..+..+ ...|.+|++.|.. ..+..+..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 457999999996667777787777766554 233332333222 2469999998843 33433332211 2
Q ss_pred EEEe-CCCcccccceeeccc--CC-CCCCCCCCceEEEcCCC-cEEEEEe-CCeEEEEecC-Cce---Eeeeccc-CCCC
Q 001295 919 CVWS-SDGWEKQKNRFLQIP--TG-RTPTAQSDTRVQFHQDQ-IHFLVVH-ETQLAIFETT-KLE---CVKQWVP-RESS 987 (1106)
Q Consensus 919 ~vwd-~~~~~~~~~~~~~~~--~~-~~~~~~~i~~~~~s~dg-~~l~~~~-d~~v~i~d~~-~~~---~~~~~~~-~~h~ 987 (1106)
.||. .+.++. ...+... .+ .......+..+++.|.. ..+.++. .+. ||-.. .++ .+..... ....
T Consensus 93 ~v~~S~DgG~T--W~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~~~~~~~~~~~~ 168 (789)
T 1sqj_A 93 AFYVSEDRGQS--FTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWTNVTSIPDAFTNG 168 (789)
T ss_dssp EEEEESSTTSE--EEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCEEETTSCCCCSTT
T ss_pred EEEEECCCCCc--ceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccCCCccCccccCCC
Confidence 3443 333221 1122111 00 00101135678888753 4444443 333 33222 222 2221110 0012
Q ss_pred CCeeEEEECC-CCCEEEEEEcC-CeEEEEEcCCcee
Q 001295 988 APITHATFSC-DSQLVYACFLD-ATVCVFSAANLKL 1021 (1106)
Q Consensus 988 ~~v~~l~~s~-d~~~l~t~s~D-g~i~vwd~~~~~~ 1021 (1106)
..+..|.+.| ++..|+++..+ +.|+. ..+.|+-
T Consensus 169 ~~~~~i~~~p~~~~~~~~~~~~~~~v~~-S~DgG~T 203 (789)
T 1sqj_A 169 IGYTSVIFDPERNGTIYASATAPQGMYV-THDGGVS 203 (789)
T ss_dssp TCEEEEEECTTSTTCEEEEESSTTCEEE-ESSTTSS
T ss_pred CCeEEEEECCCCCCEEEEEEcCCCeEEE-EcCCCcC
Confidence 4578899988 44566666655 44432 3444443
No 421
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=20.31 E-value=5.4e+02 Score=24.78 Aligned_cols=91 Identities=8% Similarity=-0.020 Sum_probs=45.9
Q ss_pred HHHHHHHHhHhcHHHHHHHHHHhhCCCcc-----HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhhHHHHHHHHH
Q 001295 9 VFLILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLE 83 (1106)
Q Consensus 9 ~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lE 83 (1106)
+.+-.-++....|.++...+++=-....+ ...-.-....|+|++|+..+.+....+... ......+...=.-
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNAT---KAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTT---TCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCch---hHHHHHHHHHHHH
Confidence 33444445555577777777664333322 222234567788888888776664322111 1211111122222
Q ss_pred HHhCCCHHHHHHHHHhhcc
Q 001295 84 ALDKHDRAKAVEILVKDLK 102 (1106)
Q Consensus 84 ll~~~~~~~A~~~l~~~l~ 102 (1106)
+...++.++|+..+++-+.
T Consensus 84 ~~~~~~~~~A~~~~~~a~~ 102 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVD 102 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHh
Confidence 2345777777777776433
No 422
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=20.24 E-value=3.8e+02 Score=24.98 Aligned_cols=107 Identities=10% Similarity=0.056 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhHhcHHHHHHHHHHhhCCCcc-HH--------------------HHHHHHhcCCHHHHHHHhccccccc
Q 001295 6 RELVFLILQFLDEEKFKETVHKLEQESGFFFN-MK--------------------YFEDEVHNGNWDDVEKYLSGFTKVD 64 (1106)
Q Consensus 6 ~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~-~~--------------------~~~~~i~~g~w~~~~~~l~~~~~~~ 64 (1106)
++++..-..++....|.++...+++=.....+ .. .=.-....|++++|+..+.+...++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 45566667777777799988888765544433 11 1123467899999999888774443
Q ss_pred CccccchhhhHHHHHHHHHHHhCCCHHHHHHHHHhhcccccccCHHHHHHHHHHh
Q 001295 65 DNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLL 119 (1106)
Q Consensus 65 ~~~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~l~~~~~~~~~~l~~ll 119 (1106)
... ....+. +=..| ...|+.++|+..+++-+.-- ..+++-+..|..+.
T Consensus 85 p~~--~~~~~~-lg~~~---~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 85 PNN--VDCLEA-CAEMQ---VCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYY 132 (208)
T ss_dssp TTC--HHHHHH-HHHHH---HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred CCC--HHHHHH-HHHHH---HHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 321 112222 12222 35699999999999864322 22555555555443
No 423
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=20.01 E-value=2e+02 Score=27.47 Aligned_cols=97 Identities=10% Similarity=0.133 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhHhcHHHHHHHHHHhhCCCc------c--HHHHHHHHhcCCHHHHHHHhcccccc-cCccccchhhhHHH
Q 001295 7 ELVFLILQFLDEEKFKETVHKLEQESGFFF------N--MKYFEDEVHNGNWDDVEKYLSGFTKV-DDNRYSMKIFFEIR 77 (1106)
Q Consensus 7 ~~~~li~q~L~~~g~~~s~~~L~~Esg~~~------~--~~~~~~~i~~g~w~~~~~~l~~~~~~-~~~~~~~~~~~~i~ 77 (1106)
....+-..++...-|.++...|++=-.... + ...-......|+|++|+..+.++... |.........|.+
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~- 84 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR- 84 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH-
Confidence 345566677888889999998876322111 1 22223456789999999998887433 2221111122322
Q ss_pred HHHHHH---------------HHhCCCHHHHHHHHHhhcccc
Q 001295 78 KQKYLE---------------ALDKHDRAKAVEILVKDLKVF 104 (1106)
Q Consensus 78 ~q~~lE---------------ll~~~~~~~A~~~l~~~l~~l 104 (1106)
-..|.+ ++..++.++|+..+++.+...
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 126 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY 126 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC
Confidence 223332 123577899999999876544
Done!